Query 001490
Match_columns 1068
No_of_seqs 940 out of 4951
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 02:08:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 9.9E-72 2.2E-76 549.2 27.2 472 2-629 38-514 (519)
2 KOG0319 WD40-repeat-containing 100.0 3.9E-59 8.4E-64 494.4 48.9 577 316-986 25-621 (775)
3 KOG0319 WD40-repeat-containing 100.0 1.4E-55 3.1E-60 467.4 46.3 550 308-942 60-620 (775)
4 KOG0318 WD40 repeat stress pro 100.0 7.7E-53 1.7E-57 429.0 61.7 576 314-984 22-602 (603)
5 KOG0318 WD40 repeat stress pro 100.0 1.5E-50 3.2E-55 412.4 59.5 542 302-941 51-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 4.5E-50 9.8E-55 425.4 64.1 578 377-1036 19-708 (893)
7 KOG0291 WD40-repeat-containing 100.0 6.4E-50 1.4E-54 424.2 62.6 590 267-992 12-717 (893)
8 KOG0275 Conserved WD40 repeat- 100.0 2.6E-52 5.6E-57 398.5 22.3 470 2-626 28-507 (508)
9 KOG0306 WD40-repeat-containing 100.0 1.5E-48 3.2E-53 413.7 51.9 580 312-1038 23-665 (888)
10 KOG0306 WD40-repeat-containing 100.0 1.7E-48 3.6E-53 413.3 47.9 547 310-944 65-667 (888)
11 KOG0271 Notchless-like WD40 re 100.0 1.7E-50 3.6E-55 395.5 28.3 333 300-690 105-479 (480)
12 KOG0271 Notchless-like WD40 re 100.0 4.3E-50 9.2E-55 392.6 29.3 367 368-890 111-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 1.3E-42 2.8E-47 365.1 40.8 622 313-1038 40-714 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 2.5E-40 5.3E-45 348.0 41.8 508 305-893 73-714 (1080)
15 KOG0272 U4/U6 small nuclear ri 100.0 6.2E-42 1.3E-46 340.8 23.0 284 307-626 172-458 (459)
16 KOG1063 RNA polymerase II elon 100.0 1.5E-38 3.3E-43 335.4 46.7 644 315-1037 19-763 (764)
17 KOG1539 WD repeat protein [Gen 100.0 2.4E-37 5.2E-42 333.1 56.0 580 316-1035 39-646 (910)
18 KOG0279 G protein beta subunit 100.0 1.7E-39 3.7E-44 306.3 30.5 299 301-628 6-313 (315)
19 KOG0272 U4/U6 small nuclear ri 100.0 9.4E-41 2E-45 332.3 22.4 285 370-690 173-458 (459)
20 KOG1063 RNA polymerase II elon 100.0 4.5E-38 9.7E-43 331.9 43.1 624 301-984 45-763 (764)
21 KOG0286 G-protein beta subunit 100.0 1.2E-38 2.5E-43 302.3 33.3 295 301-626 46-343 (343)
22 KOG0276 Vesicle coat complex C 100.0 1.4E-37 3E-42 323.6 42.6 482 302-941 5-490 (794)
23 KOG1539 WD repeat protein [Gen 100.0 1.8E-36 3.9E-41 326.4 51.3 546 307-941 73-648 (910)
24 KOG0286 G-protein beta subunit 100.0 1.6E-37 3.4E-42 294.7 32.6 287 367-690 50-343 (343)
25 KOG0315 G-protein beta subunit 100.0 2.7E-37 5.8E-42 286.0 31.2 294 322-649 9-309 (311)
26 KOG0279 G protein beta subunit 100.0 1.9E-36 4E-41 285.8 31.8 295 707-1037 12-313 (315)
27 KOG0276 Vesicle coat complex C 100.0 4.1E-35 9E-40 305.2 43.0 464 368-982 9-488 (794)
28 KOG0292 Vesicle coat complex C 100.0 1.2E-34 2.5E-39 313.0 48.0 583 307-987 6-597 (1202)
29 KOG0273 Beta-transducin family 100.0 8.3E-36 1.8E-40 301.0 32.4 345 298-739 167-522 (524)
30 KOG0295 WD40 repeat-containing 100.0 1.3E-36 2.9E-41 297.1 25.0 293 300-627 98-405 (406)
31 KOG2106 Uncharacterized conser 100.0 8.8E-33 1.9E-37 280.9 50.6 536 300-983 56-625 (626)
32 KOG0296 Angio-associated migra 100.0 2.6E-35 5.5E-40 288.4 31.0 336 300-692 54-398 (399)
33 KOG0296 Angio-associated migra 100.0 1.2E-34 2.5E-39 283.8 34.8 339 412-892 59-398 (399)
34 KOG0315 G-protein beta subunit 100.0 1.5E-34 3.1E-39 267.9 31.1 295 476-871 11-309 (311)
35 KOG0285 Pleiotropic regulator 100.0 6.2E-35 1.3E-39 284.0 26.6 297 298-630 139-441 (460)
36 KOG2048 WD40 repeat protein [G 100.0 5.1E-31 1.1E-35 278.7 56.5 550 373-1037 26-601 (691)
37 KOG0645 WD40 repeat protein [G 100.0 1.1E-33 2.3E-38 266.0 32.1 292 302-628 6-311 (312)
38 KOG0292 Vesicle coat complex C 100.0 1.8E-32 3.9E-37 296.1 45.5 578 368-1041 5-598 (1202)
39 KOG2106 Uncharacterized conser 100.0 1.1E-31 2.3E-36 273.1 47.3 523 377-1036 70-625 (626)
40 KOG0273 Beta-transducin family 100.0 1.4E-33 3E-38 285.0 29.8 279 311-628 236-523 (524)
41 KOG0316 Conserved WD40 repeat- 100.0 7.6E-34 1.7E-38 260.8 25.0 292 297-626 4-297 (307)
42 KOG0263 Transcription initiati 100.0 3.3E-34 7.2E-39 309.4 25.9 278 295-587 363-652 (707)
43 KOG0265 U5 snRNP-specific prot 100.0 2.6E-33 5.6E-38 267.3 27.8 290 304-625 41-335 (338)
44 KOG0293 WD40 repeat-containing 100.0 7.5E-34 1.6E-38 281.6 23.0 292 368-692 220-513 (519)
45 KOG0295 WD40 repeat-containing 100.0 2.1E-33 4.5E-38 274.8 24.3 285 368-690 104-404 (406)
46 KOG0265 U5 snRNP-specific prot 100.0 8.3E-33 1.8E-37 263.9 27.7 288 367-689 42-335 (338)
47 KOG0266 WD40 repeat-containing 100.0 1.3E-32 2.9E-37 310.4 32.8 294 303-628 151-454 (456)
48 KOG0282 mRNA splicing factor [ 100.0 3.1E-34 6.7E-39 291.2 17.1 296 298-626 202-503 (503)
49 KOG0284 Polyadenylation factor 100.0 4.4E-34 9.5E-39 283.4 17.5 283 310-628 96-380 (464)
50 KOG0285 Pleiotropic regulator 100.0 1.2E-32 2.7E-37 268.0 26.3 294 367-740 146-439 (460)
51 KOG2048 WD40 repeat protein [G 100.0 6.1E-29 1.3E-33 263.1 54.4 552 305-941 20-601 (691)
52 KOG0645 WD40 repeat protein [G 100.0 7.9E-31 1.7E-35 246.7 31.4 293 707-1037 11-311 (312)
53 KOG0263 Transcription initiati 100.0 2.2E-32 4.8E-37 295.4 23.5 266 709-988 377-653 (707)
54 cd00200 WD40 WD40 domain, foun 100.0 8.4E-31 1.8E-35 284.2 36.2 288 303-626 2-289 (289)
55 KOG0284 Polyadenylation factor 100.0 2.4E-32 5.2E-37 271.1 18.7 285 709-1040 95-383 (464)
56 KOG0281 Beta-TrCP (transducin 100.0 1.2E-32 2.7E-37 266.5 15.7 276 309-632 196-481 (499)
57 KOG0266 WD40 repeat-containing 100.0 1E-30 2.3E-35 295.1 32.4 291 370-692 157-454 (456)
58 KOG1445 Tumor-specific antigen 100.0 1.3E-29 2.9E-34 263.9 32.5 698 301-1049 70-856 (1012)
59 KOG0282 mRNA splicing factor [ 100.0 1.4E-31 3.1E-36 272.0 17.0 290 367-690 209-503 (503)
60 KOG0640 mRNA cleavage stimulat 100.0 8.3E-30 1.8E-34 243.5 27.4 314 302-628 104-426 (430)
61 KOG0278 Serine/threonine kinas 100.0 7E-31 1.5E-35 243.4 18.7 291 304-633 8-302 (334)
62 KOG0316 Conserved WD40 repeat- 100.0 3.9E-30 8.4E-35 236.5 23.2 268 366-651 11-281 (307)
63 KOG0281 Beta-TrCP (transducin 100.0 1.9E-31 4.1E-36 258.4 14.9 275 371-697 196-482 (499)
64 PLN00181 protein SPA1-RELATED; 100.0 4.4E-29 9.6E-34 304.9 39.7 294 306-627 479-792 (793)
65 cd00200 WD40 WD40 domain, foun 100.0 1.4E-28 2.9E-33 266.9 35.5 285 368-690 5-289 (289)
66 KOG0275 Conserved WD40 repeat- 100.0 1.9E-30 4.1E-35 248.9 17.5 290 709-1035 212-507 (508)
67 KOG1407 WD40 repeat protein [F 100.0 9.4E-29 2E-33 231.4 27.5 279 304-619 14-293 (313)
68 KOG0310 Conserved WD40 repeat- 100.0 3.8E-29 8.2E-34 255.0 26.5 285 307-628 24-309 (487)
69 PLN00181 protein SPA1-RELATED; 100.0 6.3E-28 1.4E-32 294.9 41.1 322 332-739 457-792 (793)
70 KOG0641 WD40 repeat protein [G 100.0 1.2E-27 2.5E-32 218.4 32.0 310 300-628 23-349 (350)
71 KOG0288 WD40 repeat protein Ti 100.0 9.5E-30 2.1E-34 253.2 18.1 297 296-625 161-458 (459)
72 KOG0973 Histone transcription 100.0 3.4E-28 7.5E-33 272.5 28.4 306 309-630 12-357 (942)
73 KOG0643 Translation initiation 100.0 1.1E-27 2.3E-32 224.9 26.9 287 305-629 5-318 (327)
74 KOG0278 Serine/threonine kinas 100.0 1.1E-28 2.4E-33 228.9 18.1 290 497-895 6-300 (334)
75 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-26 3.8E-31 223.7 33.5 286 307-628 11-303 (311)
76 KOG0643 Translation initiation 100.0 3.9E-27 8.4E-32 221.2 27.5 287 366-692 4-317 (327)
77 KOG0283 WD40 repeat-containing 100.0 4.4E-28 9.6E-33 264.9 24.6 310 301-630 257-578 (712)
78 KOG0313 Microtubule binding pr 100.0 1.6E-27 3.6E-32 234.9 25.7 282 308-628 103-418 (423)
79 PTZ00421 coronin; Provisional 100.0 1.5E-26 3.3E-31 258.9 37.0 289 309-610 19-315 (493)
80 KOG0973 Histone transcription 100.0 1.6E-27 3.6E-32 267.1 28.0 306 709-1042 12-360 (942)
81 KOG0640 mRNA cleavage stimulat 100.0 7.6E-28 1.7E-32 230.2 21.5 308 597-984 111-426 (430)
82 KOG0274 Cdc4 and related F-box 100.0 9.5E-27 2.1E-31 260.1 29.7 284 308-636 206-490 (537)
83 KOG0310 Conserved WD40 repeat- 100.0 1.2E-26 2.5E-31 237.0 26.5 282 709-1036 25-308 (487)
84 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-25 3.8E-30 216.9 33.1 271 368-651 10-286 (311)
85 KOG0305 Anaphase promoting com 100.0 1.3E-26 2.8E-31 247.7 27.7 279 313-630 180-463 (484)
86 KOG1407 WD40 repeat protein [F 100.0 3.8E-26 8.3E-31 214.0 25.1 279 545-884 14-294 (313)
87 KOG0772 Uncharacterized conser 100.0 9.6E-27 2.1E-31 237.8 22.4 313 635-1039 162-490 (641)
88 KOG0299 U3 snoRNP-associated p 100.0 3.6E-26 7.8E-31 231.4 26.1 301 303-625 135-453 (479)
89 KOG0283 WD40 repeat-containing 100.0 2.3E-26 5E-31 251.5 26.4 276 708-987 265-579 (712)
90 KOG0772 Uncharacterized conser 99.9 1.7E-26 3.8E-31 235.9 23.5 309 296-629 153-488 (641)
91 KOG0300 WD40 repeat-containing 99.9 2.3E-26 5.1E-31 220.5 22.6 298 300-693 138-477 (481)
92 PTZ00420 coronin; Provisional 99.9 4.7E-25 1E-29 247.2 36.9 237 368-610 70-318 (568)
93 KOG0277 Peroxisomal targeting 99.9 1.9E-26 4.2E-31 215.0 21.0 284 314-627 12-308 (311)
94 KOG0647 mRNA export protein (c 99.9 1.3E-25 2.8E-30 215.0 26.7 275 310-617 27-312 (347)
95 KOG0313 Microtubule binding pr 99.9 6.9E-26 1.5E-30 223.5 25.3 281 370-692 103-418 (423)
96 KOG2096 WD40 repeat protein [G 99.9 1.9E-25 4.2E-30 214.8 25.3 311 633-986 79-404 (420)
97 KOG0288 WD40 repeat protein Ti 99.9 1.3E-26 2.8E-31 231.1 17.7 285 368-690 171-459 (459)
98 KOG0641 WD40 repeat protein [G 99.9 2.7E-24 5.9E-29 196.5 31.2 300 368-740 28-349 (350)
99 PTZ00421 coronin; Provisional 99.9 9.1E-25 2E-29 244.7 34.0 270 371-650 19-313 (493)
100 KOG0294 WD40 repeat-containing 99.9 9.1E-25 2E-29 210.5 28.3 243 773-1039 38-283 (362)
101 KOG0268 Sof1-like rRNA process 99.9 1E-26 2.3E-31 227.6 14.8 293 300-632 56-349 (433)
102 KOG0308 Conserved WD40 repeat- 99.9 5.6E-26 1.2E-30 239.1 20.7 242 377-630 29-287 (735)
103 KOG1963 WD40 repeat protein [G 99.9 3.2E-23 7E-28 227.5 42.8 567 369-1040 13-653 (792)
104 KOG0301 Phospholipase A2-activ 99.9 5E-25 1.1E-29 233.9 27.7 285 300-630 4-290 (745)
105 KOG0299 U3 snoRNP-associated p 99.9 5.3E-25 1.1E-29 223.0 26.6 250 368-630 138-412 (479)
106 KOG0274 Cdc4 and related F-box 99.9 3.4E-25 7.3E-30 247.7 27.9 279 371-697 207-487 (537)
107 KOG0647 mRNA export protein (c 99.9 7.4E-25 1.6E-29 209.9 25.0 274 369-655 24-308 (347)
108 KOG0308 Conserved WD40 repeat- 99.9 1.5E-25 3.3E-30 235.9 21.9 352 309-693 20-394 (735)
109 KOG0289 mRNA splicing factor [ 99.9 2E-24 4.2E-29 216.7 28.2 285 310-627 219-505 (506)
110 KOG0289 mRNA splicing factor [ 99.9 1.2E-24 2.7E-29 218.1 25.8 281 373-690 220-504 (506)
111 KOG0268 Sof1-like rRNA process 99.9 6.4E-26 1.4E-30 222.1 16.0 284 412-741 61-346 (433)
112 KOG0305 Anaphase promoting com 99.9 7.5E-25 1.6E-29 234.3 25.3 275 376-693 181-462 (484)
113 KOG0277 Peroxisomal targeting 99.9 8.7E-25 1.9E-29 204.1 21.1 284 375-691 11-308 (311)
114 KOG2096 WD40 repeat protein [G 99.9 3.8E-24 8.2E-29 206.0 24.7 256 366-634 80-366 (420)
115 KOG1274 WD40 repeat protein [G 99.9 1E-20 2.2E-25 208.0 53.8 279 307-625 10-297 (933)
116 KOG1445 Tumor-specific antigen 99.9 3.2E-23 7E-28 216.6 31.2 216 367-588 74-297 (1012)
117 KOG1036 Mitotic spindle checkp 99.9 2.3E-23 5E-28 200.9 27.9 270 310-618 13-294 (323)
118 KOG0294 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 202.3 25.8 272 387-695 4-284 (362)
119 PTZ00420 coronin; Provisional 99.9 6.6E-23 1.4E-27 230.0 35.1 247 390-651 50-317 (568)
120 KOG0300 WD40 repeat-containing 99.9 8.5E-24 1.8E-28 203.0 23.0 325 596-986 146-478 (481)
121 KOG0639 Transducin-like enhanc 99.9 3.4E-24 7.4E-29 218.2 21.3 287 308-627 417-703 (705)
122 KOG1332 Vesicle coat complex C 99.9 2.2E-24 4.7E-29 200.2 17.6 251 368-628 7-286 (299)
123 KOG1963 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 214.4 42.8 514 415-1044 14-590 (792)
124 KOG1274 WD40 repeat protein [G 99.9 2.3E-20 5E-25 205.3 51.4 271 370-657 11-287 (933)
125 KOG0264 Nucleosome remodeling 99.9 9.2E-24 2E-28 214.6 21.3 264 307-585 121-405 (422)
126 KOG0301 Phospholipase A2-activ 99.9 3.1E-23 6.7E-28 220.4 25.5 275 707-1037 11-288 (745)
127 KOG1538 Uncharacterized conser 99.9 1E-21 2.3E-26 206.6 33.9 273 312-629 14-294 (1081)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-21 4E-26 212.4 36.9 289 325-649 3-299 (300)
129 KOG1273 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 194.8 24.4 299 297-630 12-324 (405)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.8E-21 1E-25 209.2 39.7 279 567-993 2-288 (300)
131 KOG2055 WD40 repeat protein [G 99.9 1.4E-22 3.1E-27 205.3 24.2 288 310-628 213-512 (514)
132 KOG0646 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 205.6 24.5 292 325-651 9-330 (476)
133 KOG1332 Vesicle coat complex C 99.9 9.3E-23 2E-27 189.5 18.9 255 306-585 7-287 (299)
134 KOG1036 Mitotic spindle checkp 99.9 9.1E-22 2E-26 190.0 26.2 270 371-658 12-292 (323)
135 KOG0646 WD40 repeat protein [G 99.9 3.6E-22 7.7E-27 203.2 24.0 302 437-873 13-330 (476)
136 KOG0639 Transducin-like enhanc 99.9 1.9E-22 4E-27 205.6 21.1 284 502-849 416-703 (705)
137 KOG4283 Transcription-coupled 99.9 1.6E-21 3.5E-26 185.9 25.7 320 307-692 40-365 (397)
138 KOG2055 WD40 repeat protein [G 99.9 6.2E-22 1.3E-26 200.7 24.2 281 672-984 223-512 (514)
139 KOG4328 WD40 protein [Function 99.9 1.6E-21 3.4E-26 197.7 24.6 304 302-628 178-495 (498)
140 KOG0650 WD40 repeat nucleolar 99.9 1E-21 2.2E-26 205.0 23.8 342 274-689 357-732 (733)
141 KOG4283 Transcription-coupled 99.9 3.2E-21 7E-26 183.9 25.1 305 709-1037 42-365 (397)
142 KOG1273 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 188.1 22.6 282 375-692 26-322 (405)
143 KOG0264 Nucleosome remodeling 99.9 1.4E-21 3.1E-26 198.8 22.6 253 368-629 120-405 (422)
144 KOG0650 WD40 repeat nucleolar 99.9 1.2E-21 2.5E-26 204.6 21.6 324 365-737 393-732 (733)
145 KOG0267 Microtubule severing p 99.9 4E-23 8.7E-28 220.3 10.5 236 368-619 24-259 (825)
146 KOG0269 WD40 repeat-containing 99.9 6.3E-21 1.4E-25 205.5 19.8 243 714-986 91-342 (839)
147 KOG0321 WD40 repeat-containing 99.9 2.3E-20 5E-25 196.7 22.4 286 320-630 61-393 (720)
148 KOG1538 Uncharacterized conser 99.9 8.4E-19 1.8E-23 185.0 33.0 175 419-610 14-188 (1081)
149 KOG0267 Microtubule severing p 99.9 6.8E-22 1.5E-26 211.0 10.0 239 304-576 22-260 (825)
150 KOG1009 Chromatin assembly com 99.9 1.2E-19 2.7E-24 181.5 24.7 308 305-631 9-375 (434)
151 KOG1034 Transcriptional repres 99.9 1E-19 2.2E-24 176.8 23.1 294 305-628 33-383 (385)
152 KOG0321 WD40 repeat-containing 99.9 8.2E-20 1.8E-24 192.6 23.2 287 723-1038 65-392 (720)
153 KOG2445 Nuclear pore complex c 99.9 2.9E-19 6.4E-24 172.1 24.9 257 368-630 9-320 (361)
154 KOG0270 WD40 repeat-containing 99.8 1.5E-19 3.1E-24 183.1 23.5 251 375-633 176-454 (463)
155 KOG0269 WD40 repeat-containing 99.8 2.7E-20 5.8E-25 200.7 18.6 286 373-690 40-338 (839)
156 KOG2445 Nuclear pore complex c 99.8 5.2E-19 1.1E-23 170.5 25.1 268 307-595 10-332 (361)
157 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-16 2.9E-21 184.8 48.7 373 412-893 60-443 (466)
158 COG2319 FOG: WD40 repeat [Gene 99.8 5E-17 1.1E-21 188.3 45.1 371 305-741 60-443 (466)
159 KOG1034 Transcriptional repres 99.8 3E-19 6.6E-24 173.6 21.3 298 709-1036 37-382 (385)
160 KOG1912 WD40 repeat protein [G 99.8 1.1E-17 2.5E-22 180.0 34.8 605 311-989 16-746 (1062)
161 KOG4497 Uncharacterized conser 99.8 7.6E-19 1.6E-23 170.4 22.7 409 377-885 13-425 (447)
162 KOG4328 WD40 protein [Function 99.8 7.1E-19 1.5E-23 178.6 22.4 311 626-985 172-496 (498)
163 KOG0307 Vesicle coat complex C 99.8 4.2E-20 9E-25 208.9 14.7 296 313-630 9-329 (1049)
164 KOG4378 Nuclear protein COP1 [ 99.8 8.5E-19 1.8E-23 179.0 22.5 294 570-966 6-305 (673)
165 KOG4378 Nuclear protein COP1 [ 99.8 7.9E-19 1.7E-23 179.3 22.2 288 333-652 12-305 (673)
166 KOG1009 Chromatin assembly com 99.8 7.7E-18 1.7E-22 168.8 27.8 302 710-1040 13-375 (434)
167 KOG2919 Guanine nucleotide-bin 99.8 5E-18 1.1E-22 164.6 22.9 289 314-619 53-361 (406)
168 KOG0302 Ribosome Assembly prot 99.8 2.5E-18 5.3E-23 170.3 20.8 262 306-581 147-435 (440)
169 KOG1524 WD40 repeat-containing 99.8 3.9E-17 8.4E-22 168.7 30.2 499 370-1040 12-526 (737)
170 KOG4497 Uncharacterized conser 99.8 1.1E-17 2.4E-22 162.4 23.8 378 511-1030 14-425 (447)
171 KOG0303 Actin-binding protein 99.8 8.9E-18 1.9E-22 167.3 23.7 237 367-609 76-320 (472)
172 KOG1912 WD40 repeat protein [G 99.8 1.7E-16 3.8E-21 171.0 34.8 612 373-1050 16-733 (1062)
173 KOG2919 Guanine nucleotide-bin 99.8 1E-17 2.2E-22 162.5 21.8 191 780-975 160-361 (406)
174 KOG0270 WD40 repeat-containing 99.8 4.1E-18 9E-23 172.7 19.1 252 322-589 192-454 (463)
175 KOG0302 Ribosome Assembly prot 99.8 4.9E-18 1.1E-22 168.2 17.7 173 300-494 201-379 (440)
176 KOG0644 Uncharacterized conser 99.8 5.4E-19 1.2E-23 191.5 10.6 286 302-633 182-473 (1113)
177 KOG1524 WD40 repeat-containing 99.8 2.2E-16 4.7E-21 163.2 28.5 500 308-943 12-525 (737)
178 KOG0642 Cell-cycle nuclear pro 99.8 3.7E-18 8E-23 178.3 14.5 261 367-638 289-571 (577)
179 KOG1334 WD40 repeat protein [G 99.8 4E-18 8.8E-23 174.4 13.2 302 301-630 133-468 (559)
180 KOG0307 Vesicle coat complex C 99.8 3.5E-18 7.6E-23 193.5 14.1 251 312-587 66-330 (1049)
181 KOG0303 Actin-binding protein 99.8 3.7E-17 8.1E-22 162.9 19.5 237 306-565 77-320 (472)
182 KOG4227 WD40 repeat protein [G 99.8 8E-17 1.7E-21 159.7 20.4 301 302-628 48-387 (609)
183 KOG0322 G-protein beta subunit 99.7 2.5E-17 5.5E-22 155.4 15.2 293 299-627 3-322 (323)
184 KOG0644 Uncharacterized conser 99.7 4.7E-18 1E-22 184.3 11.3 288 542-895 181-471 (1113)
185 KOG0649 WD40 repeat protein [G 99.7 2.3E-15 5.1E-20 140.3 27.1 286 712-1035 12-314 (325)
186 KOG1007 WD repeat protein TSSC 99.7 1.8E-16 3.9E-21 151.5 20.1 260 304-584 57-361 (370)
187 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 141.0 26.0 278 312-625 12-313 (325)
188 PRK11028 6-phosphogluconolacto 99.7 4.3E-15 9.3E-20 163.2 33.7 252 779-1046 35-313 (330)
189 KOG2110 Uncharacterized conser 99.7 2.7E-15 5.9E-20 149.1 27.7 241 778-1040 5-251 (391)
190 KOG1188 WD40 repeat protein [G 99.7 1.2E-16 2.5E-21 156.8 17.5 292 433-740 42-346 (376)
191 KOG2110 Uncharacterized conser 99.7 1.2E-14 2.5E-19 144.7 31.6 240 372-630 5-250 (391)
192 KOG1310 WD40 repeat protein [G 99.7 2.5E-16 5.3E-21 163.3 20.5 248 412-704 45-315 (758)
193 KOG1188 WD40 repeat protein [G 99.7 3.2E-16 7E-21 153.8 19.6 277 324-628 41-346 (376)
194 KOG0322 G-protein beta subunit 99.7 1.1E-16 2.4E-21 151.1 15.6 287 367-691 9-322 (323)
195 PRK11028 6-phosphogluconolacto 99.7 1.3E-14 2.8E-19 159.4 34.5 275 324-628 3-304 (330)
196 KOG0642 Cell-cycle nuclear pro 99.7 9.2E-17 2E-21 168.0 16.1 270 303-595 287-572 (577)
197 KOG1007 WD repeat protein TSSC 99.7 8E-16 1.7E-20 147.1 21.0 182 781-984 173-361 (370)
198 KOG4227 WD40 repeat protein [G 99.7 8.8E-16 1.9E-20 152.4 21.7 293 368-691 52-386 (609)
199 KOG0290 Conserved WD40 repeat- 99.7 2.4E-15 5.2E-20 144.1 23.3 289 303-624 38-361 (364)
200 KOG0771 Prolactin regulatory e 99.7 2.6E-16 5.6E-21 159.5 14.8 198 782-985 148-355 (398)
201 COG4946 Uncharacterized protei 99.7 4.1E-12 8.8E-17 130.2 43.2 415 322-882 50-508 (668)
202 PRK01742 tolB translocation pr 99.7 5E-15 1.1E-19 167.5 24.3 235 332-609 183-426 (429)
203 PF02239 Cytochrom_D1: Cytochr 99.7 1.6E-13 3.4E-18 149.4 34.4 318 530-950 15-356 (369)
204 PF02239 Cytochrom_D1: Cytochr 99.7 3.4E-13 7.3E-18 146.7 37.0 332 431-898 6-353 (369)
205 KOG1517 Guanine nucleotide bin 99.7 1.5E-14 3.2E-19 161.7 25.7 194 790-987 1178-1384(1387)
206 KOG0771 Prolactin regulatory e 99.7 1.7E-15 3.6E-20 153.7 16.2 197 823-1038 148-355 (398)
207 KOG1587 Cytoplasmic dynein int 99.7 4.7E-14 1E-18 156.9 28.2 250 371-630 241-518 (555)
208 KOG1240 Protein kinase contain 99.6 1E-13 2.2E-18 157.8 28.1 256 368-631 1044-1337(1431)
209 KOG0290 Conserved WD40 repeat- 99.6 1E-13 2.2E-18 133.1 23.6 243 776-1028 94-357 (364)
210 KOG2394 WD40 protein DMR-N9 [G 99.6 5.6E-14 1.2E-18 146.1 22.9 169 787-964 182-384 (636)
211 KOG1523 Actin-related protein 99.6 9.9E-14 2.1E-18 135.3 23.2 231 307-565 7-260 (361)
212 KOG1517 Guanine nucleotide bin 99.6 7.6E-14 1.7E-18 156.1 25.5 297 308-630 1062-1383(1387)
213 KOG0974 WD-repeat protein WDR6 99.6 6.8E-12 1.5E-16 141.8 40.9 277 312-630 9-290 (967)
214 PRK01742 tolB translocation pr 99.6 2.3E-14 5E-19 162.1 21.4 231 297-565 190-426 (429)
215 KOG1334 WD40 repeat protein [G 99.6 6E-15 1.3E-19 151.5 14.4 296 368-692 138-466 (559)
216 KOG1587 Cytoplasmic dynein int 99.6 9.5E-14 2.1E-18 154.4 24.7 253 311-585 243-517 (555)
217 KOG0974 WD-repeat protein WDR6 99.6 1.5E-11 3.3E-16 139.0 41.8 200 312-541 89-290 (967)
218 KOG2139 WD40 repeat protein [G 99.6 8.6E-13 1.9E-17 130.8 27.5 288 312-628 100-431 (445)
219 KOG2111 Uncharacterized conser 99.6 2.5E-12 5.4E-17 125.8 30.4 239 374-630 7-258 (346)
220 KOG1240 Protein kinase contain 99.6 1.2E-13 2.7E-18 157.2 24.5 366 625-1035 1034-1431(1431)
221 PF04762 IKI3: IKI3 family; I 99.6 3.3E-09 7.2E-14 128.4 63.9 541 371-992 74-692 (928)
222 COG4946 Uncharacterized protei 99.6 1.5E-10 3.2E-15 119.0 43.8 529 294-985 62-655 (668)
223 KOG2139 WD40 repeat protein [G 99.6 6.5E-13 1.4E-17 131.6 25.7 259 711-984 141-431 (445)
224 PRK03629 tolB translocation pr 99.6 9.3E-13 2E-17 148.5 28.9 238 333-608 179-427 (429)
225 KOG1310 WD40 repeat protein [G 99.6 2.5E-14 5.3E-19 148.7 14.2 246 301-592 41-311 (758)
226 PRK05137 tolB translocation pr 99.6 1.4E-12 3E-17 148.4 29.3 237 333-608 182-432 (435)
227 KOG2111 Uncharacterized conser 99.6 1.9E-12 4.1E-17 126.6 25.2 242 780-1042 7-261 (346)
228 KOG1832 HIV-1 Vpr-binding prot 99.6 4.4E-15 9.6E-20 162.1 7.8 350 137-617 1003-1378(1516)
229 PRK03629 tolB translocation pr 99.6 6E-13 1.3E-17 150.0 24.9 233 296-564 184-427 (429)
230 KOG2321 WD40 repeat protein [G 99.6 9.2E-13 2E-17 138.2 24.0 284 308-630 49-345 (703)
231 KOG1523 Actin-related protein 99.5 7E-13 1.5E-17 129.5 21.3 252 777-1046 9-286 (361)
232 KOG2041 WD40 repeat protein [G 99.5 1.3E-11 2.8E-16 132.5 32.1 508 371-982 13-617 (1189)
233 KOG1272 WD40-repeat-containing 99.5 3.3E-14 7.2E-19 145.2 11.5 272 312-624 131-405 (545)
234 PRK04922 tolB translocation pr 99.5 7.1E-13 1.5E-17 150.4 23.5 232 297-564 190-432 (433)
235 KOG1272 WD40-repeat-containing 99.5 3.6E-14 7.8E-19 144.9 11.3 269 601-980 132-405 (545)
236 PRK04922 tolB translocation pr 99.5 1.5E-12 3.3E-17 147.8 25.7 238 333-608 184-432 (433)
237 KOG2315 Predicted translation 99.5 1.5E-11 3.3E-16 129.6 30.3 286 312-636 36-352 (566)
238 PRK02889 tolB translocation pr 99.5 1.1E-12 2.4E-17 148.2 23.7 232 299-565 184-425 (427)
239 PRK02889 tolB translocation pr 99.5 2.6E-12 5.7E-17 145.1 25.8 223 368-608 191-424 (427)
240 COG5354 Uncharacterized protei 99.5 1E-11 2.3E-16 129.0 27.4 279 310-627 32-347 (561)
241 PF10282 Lactonase: Lactonase, 99.5 2.6E-10 5.7E-15 125.0 40.6 211 780-992 88-332 (345)
242 KOG2394 WD40 protein DMR-N9 [G 99.5 1.2E-12 2.6E-17 136.4 20.3 252 312-607 125-383 (636)
243 KOG3881 Uncharacterized conser 99.5 3.4E-12 7.3E-17 128.3 21.7 273 309-608 54-341 (412)
244 KOG2041 WD40 repeat protein [G 99.5 2.6E-10 5.6E-15 122.8 37.1 543 312-944 16-622 (1189)
245 KOG2315 Predicted translation 99.5 5.2E-11 1.1E-15 125.6 31.1 336 505-893 34-391 (566)
246 PF04762 IKI3: IKI3 family; I 99.5 3.8E-08 8.2E-13 119.4 60.3 519 373-1037 22-639 (928)
247 PRK05137 tolB translocation pr 99.5 4E-12 8.7E-17 144.5 24.8 233 296-564 187-432 (435)
248 TIGR02658 TTQ_MADH_Hv methylam 99.5 7.8E-10 1.7E-14 117.1 37.5 205 782-993 108-339 (352)
249 COG5354 Uncharacterized protei 99.5 2.8E-10 6E-15 118.6 32.3 365 489-976 16-421 (561)
250 COG2706 3-carboxymuconate cycl 99.4 6.9E-10 1.5E-14 111.8 33.9 281 683-989 15-328 (346)
251 KOG2314 Translation initiation 99.4 9.9E-11 2.1E-15 122.7 28.6 317 507-975 212-558 (698)
252 KOG2321 WD40 repeat protein [G 99.4 2.7E-11 5.9E-16 127.4 24.3 203 415-633 49-263 (703)
253 TIGR02658 TTQ_MADH_Hv methylam 99.4 6.3E-10 1.4E-14 117.7 32.2 269 333-636 27-338 (352)
254 PRK01029 tolB translocation pr 99.4 6.4E-11 1.4E-15 132.9 26.2 239 299-566 173-426 (428)
255 KOG1409 Uncharacterized conser 99.4 4.7E-11 1E-15 118.0 21.1 341 542-986 15-396 (404)
256 PF10282 Lactonase: Lactonase, 99.4 3.8E-09 8.3E-14 115.9 38.9 248 373-628 37-322 (345)
257 PRK01029 tolB translocation pr 99.4 2.3E-10 5E-15 128.5 28.7 227 368-609 180-425 (428)
258 PRK00178 tolB translocation pr 99.4 9.7E-11 2.1E-15 133.7 25.6 230 300-564 188-427 (430)
259 PRK04792 tolB translocation pr 99.4 5.4E-11 1.2E-15 134.7 23.1 229 301-564 208-446 (448)
260 PRK04792 tolB translocation pr 99.3 3.4E-10 7.3E-15 128.3 28.1 223 368-608 213-446 (448)
261 PRK00178 tolB translocation pr 99.3 4.2E-10 9.1E-15 128.5 29.0 223 368-608 194-427 (430)
262 PF08662 eIF2A: Eukaryotic tra 99.3 1.3E-10 2.8E-15 114.6 20.5 163 376-547 9-186 (194)
263 KOG1354 Serine/threonine prote 99.3 8.1E-11 1.8E-15 116.2 18.3 266 309-586 24-361 (433)
264 COG2706 3-carboxymuconate cycl 99.3 1.8E-08 3.9E-13 101.8 35.2 303 484-871 15-345 (346)
265 KOG2314 Translation initiation 99.3 4.8E-10 1E-14 117.7 24.9 286 309-628 249-573 (698)
266 TIGR02800 propeller_TolB tol-p 99.3 3.9E-10 8.5E-15 128.9 27.2 210 368-593 185-405 (417)
267 TIGR02800 propeller_TolB tol-p 99.3 1.5E-10 3.3E-15 132.2 23.8 216 300-548 179-405 (417)
268 KOG1354 Serine/threonine prote 99.3 3.4E-10 7.4E-15 111.9 21.8 247 372-638 25-312 (433)
269 KOG3881 Uncharacterized conser 99.3 1.5E-10 3.2E-15 116.7 19.6 208 777-993 104-329 (412)
270 PF08662 eIF2A: Eukaryotic tra 99.3 2.8E-10 6.1E-15 112.3 20.6 163 421-593 9-187 (194)
271 KOG1409 Uncharacterized conser 99.3 6.8E-11 1.5E-15 116.9 15.3 357 453-851 16-395 (404)
272 KOG4547 WD40 repeat-containing 99.3 6.2E-10 1.4E-14 118.8 22.8 194 381-585 2-221 (541)
273 TIGR03300 assembly_YfgL outer 99.2 2.2E-08 4.7E-13 112.4 32.4 148 433-592 67-216 (377)
274 TIGR03300 assembly_YfgL outer 99.2 7.5E-08 1.6E-12 108.1 35.7 208 797-1035 153-377 (377)
275 KOG4547 WD40 repeat-containing 99.2 6.2E-09 1.3E-13 111.3 23.8 190 324-539 6-220 (541)
276 PLN02919 haloacid dehalogenase 99.1 1.1E-07 2.3E-12 118.0 33.4 255 782-1040 571-891 (1057)
277 PRK04043 tolB translocation pr 99.1 2.3E-08 5.1E-13 111.4 25.0 208 300-541 178-402 (419)
278 PLN02919 haloacid dehalogenase 99.1 9.1E-08 2E-12 118.6 32.1 260 714-988 571-892 (1057)
279 KOG0280 Uncharacterized conser 99.0 1.4E-08 3.1E-13 98.7 18.0 251 312-586 71-335 (339)
280 KOG1897 Damage-specific DNA bi 99.0 0.00019 4.2E-09 82.3 54.2 581 308-941 304-942 (1096)
281 PF15492 Nbas_N: Neuroblastoma 99.0 1.6E-07 3.4E-12 92.3 22.5 206 783-993 2-268 (282)
282 KOG3617 WD40 and TPR repeat-co 99.0 4E-08 8.6E-13 108.4 20.2 506 312-946 17-590 (1416)
283 KOG4190 Uncharacterized conser 99.0 4.4E-09 9.6E-14 110.0 11.6 294 302-624 727-1032(1034)
284 KOG1064 RAVE (regulator of V-A 98.9 3.2E-09 7E-14 126.1 11.5 201 369-595 2205-2409(2439)
285 KOG0280 Uncharacterized conser 98.9 1.5E-07 3.2E-12 91.8 20.6 198 781-986 124-335 (339)
286 PRK11138 outer membrane biogen 98.9 1.8E-06 3.9E-11 97.2 32.9 213 797-1037 168-394 (394)
287 PRK04043 tolB translocation pr 98.9 6E-07 1.3E-11 100.2 28.2 218 800-1047 170-408 (419)
288 KOG4190 Uncharacterized conser 98.9 5.3E-09 1.1E-13 109.5 10.4 289 412-736 730-1032(1034)
289 KOG1064 RAVE (regulator of V-A 98.9 6.9E-09 1.5E-13 123.4 12.0 226 384-637 2180-2407(2439)
290 KOG1897 Damage-specific DNA bi 98.9 0.00042 9.2E-09 79.7 55.1 580 379-1042 264-947 (1096)
291 PF07433 DUF1513: Protein of u 98.8 3.7E-06 8E-11 85.8 27.8 233 314-579 8-280 (305)
292 PF07433 DUF1513: Protein of u 98.8 3.9E-06 8.4E-11 85.7 27.0 207 782-993 8-256 (305)
293 KOG3914 WD repeat protein WDR4 98.8 5.3E-08 1.2E-12 99.4 13.5 165 312-502 64-232 (390)
294 PRK11138 outer membrane biogen 98.8 7.9E-06 1.7E-10 92.0 31.9 153 433-593 71-232 (394)
295 PF15492 Nbas_N: Neuroblastoma 98.8 3.8E-06 8.3E-11 82.8 24.8 212 825-1041 3-263 (282)
296 KOG3617 WD40 and TPR repeat-co 98.8 6E-07 1.3E-11 99.4 21.3 300 374-739 17-332 (1416)
297 KOG3914 WD repeat protein WDR4 98.8 8.1E-08 1.8E-12 98.1 12.5 159 823-993 66-232 (390)
298 PF08450 SGL: SMP-30/Gluconola 98.7 2.9E-05 6.3E-10 81.1 32.1 216 783-1025 4-244 (246)
299 PF06433 Me-amine-dh_H: Methyl 98.7 9.9E-06 2.1E-10 83.7 27.0 207 781-993 97-329 (342)
300 PF08450 SGL: SMP-30/Gluconola 98.7 2.1E-05 4.5E-10 82.2 30.6 221 715-973 4-244 (246)
301 KOG4532 WD40-like repeat conta 98.7 1.5E-06 3.2E-11 83.7 19.3 147 375-523 161-320 (344)
302 KOG0309 Conserved WD40 repeat- 98.7 1.1E-07 2.4E-12 103.6 13.0 294 372-692 24-339 (1081)
303 PF13360 PQQ_2: PQQ-like domai 98.7 3.8E-06 8.3E-11 87.6 24.5 223 798-1044 2-237 (238)
304 KOG1832 HIV-1 Vpr-binding prot 98.7 1.1E-08 2.3E-13 113.3 4.8 215 368-615 1097-1318(1516)
305 COG5170 CDC55 Serine/threonine 98.7 1.6E-07 3.6E-12 91.8 12.3 260 309-583 25-366 (460)
306 PF06433 Me-amine-dh_H: Methyl 98.7 2.1E-05 4.7E-10 81.3 27.6 285 531-860 17-330 (342)
307 KOG0309 Conserved WD40 repeat- 98.7 2.7E-07 6E-12 100.6 13.7 247 312-585 69-340 (1081)
308 PF13360 PQQ_2: PQQ-like domai 98.6 8E-06 1.7E-10 85.2 23.6 223 758-991 7-237 (238)
309 COG5170 CDC55 Serine/threonine 98.6 6.6E-07 1.4E-11 87.7 13.6 258 777-1039 25-369 (460)
310 PRK02888 nitrous-oxide reducta 98.6 1.5E-05 3.3E-10 89.1 25.8 183 785-985 199-405 (635)
311 KOG4532 WD40-like repeat conta 98.6 7.8E-06 1.7E-10 78.9 20.2 191 793-988 132-335 (344)
312 PF00930 DPPIV_N: Dipeptidyl p 98.6 2E-05 4.4E-10 86.9 27.0 267 319-618 1-347 (353)
313 PRK02888 nitrous-oxide reducta 98.6 9.5E-06 2.1E-10 90.7 23.0 104 786-893 284-405 (635)
314 KOG1920 IkappaB kinase complex 98.6 8.4E-05 1.8E-09 87.1 30.8 120 782-903 199-333 (1265)
315 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00043 9.4E-09 67.0 30.3 137 476-623 24-160 (354)
316 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00013 2.9E-09 70.4 26.9 147 316-490 16-162 (354)
317 KOG4714 Nucleoporin [Nuclear s 98.5 1.6E-06 3.5E-11 83.2 13.3 209 313-540 39-255 (319)
318 KOG0882 Cyclophilin-related pe 98.5 2.9E-06 6.2E-11 87.8 15.9 300 709-1035 8-370 (558)
319 PF00930 DPPIV_N: Dipeptidyl p 98.5 7.9E-05 1.7E-09 82.2 28.7 304 514-881 1-346 (353)
320 PF10607 CLTH: CTLH/CRA C-term 98.5 1E-07 2.3E-12 89.7 4.9 134 13-158 4-140 (145)
321 KOG1645 RING-finger-containing 98.5 2.2E-05 4.7E-10 80.5 21.1 251 367-628 188-461 (463)
322 KOG1920 IkappaB kinase complex 98.5 5E-05 1.1E-09 88.9 25.8 233 710-988 68-326 (1265)
323 PF00400 WD40: WD domain, G-be 98.5 5.1E-07 1.1E-11 62.7 6.3 39 852-890 1-39 (39)
324 KOG0882 Cyclophilin-related pe 98.5 4.1E-06 8.9E-11 86.7 15.1 258 371-637 8-314 (558)
325 KOG2695 WD40 repeat protein [G 98.4 5.5E-07 1.2E-11 89.8 8.1 168 314-505 215-388 (425)
326 KOG3621 WD40 repeat-containing 98.4 5E-05 1.1E-09 83.9 23.7 139 310-469 33-178 (726)
327 PF14583 Pectate_lyase22: Olig 98.4 0.00083 1.8E-08 71.2 31.3 278 317-626 42-379 (386)
328 KOG1275 PAB-dependent poly(A) 98.4 6.1E-06 1.3E-10 92.9 15.6 180 789-982 146-340 (1118)
329 KOG4714 Nucleoporin [Nuclear s 98.4 3.8E-06 8.2E-11 80.7 11.8 195 831-1035 100-316 (319)
330 PF00400 WD40: WD domain, G-be 98.4 7.7E-07 1.7E-11 61.8 5.5 38 301-339 2-39 (39)
331 PF14583 Pectate_lyase22: Olig 98.3 0.0019 4E-08 68.6 31.2 299 512-891 42-380 (386)
332 KOG1645 RING-finger-containing 98.3 5.9E-05 1.3E-09 77.4 18.0 250 303-584 186-461 (463)
333 cd00216 PQQ_DH Dehydrogenases 98.2 0.003 6.5E-08 72.9 33.3 197 433-634 63-325 (488)
334 smart00668 CTLH C-terminal to 98.2 2.8E-07 6E-12 70.8 -0.0 53 13-66 4-56 (58)
335 KOG2695 WD40 repeat protein [G 98.2 6.6E-06 1.4E-10 82.3 9.1 151 479-639 228-387 (425)
336 KOG2066 Vacuolar assembly/sort 98.1 0.00011 2.3E-09 82.5 17.9 188 820-1037 40-233 (846)
337 PRK13616 lipoprotein LpqB; Pro 98.1 0.00057 1.2E-08 79.3 24.5 218 820-1052 350-583 (591)
338 KOG2114 Vacuolar assembly/sort 98.1 0.00026 5.6E-09 80.1 20.5 206 826-1046 30-252 (933)
339 KOG1275 PAB-dependent poly(A) 98.1 5.9E-05 1.3E-09 85.3 15.5 187 433-629 149-343 (1118)
340 cd00216 PQQ_DH Dehydrogenases 98.1 0.0055 1.2E-07 70.7 32.4 183 798-993 174-433 (488)
341 KOG2066 Vacuolar assembly/sort 98.1 0.0003 6.6E-09 79.0 20.2 178 722-941 49-233 (846)
342 PF11768 DUF3312: Protein of u 98.1 0.003 6.5E-08 69.4 26.8 112 915-1039 208-331 (545)
343 PF02897 Peptidase_S9_N: Proly 98.1 0.0084 1.8E-07 68.3 32.5 251 312-589 125-409 (414)
344 COG0823 TolB Periplasmic compo 98.0 0.00035 7.6E-09 77.5 20.1 198 300-526 182-390 (425)
345 KOG2114 Vacuolar assembly/sort 98.0 0.00074 1.6E-08 76.5 22.3 203 784-993 29-252 (933)
346 PF06977 SdiA-regulated: SdiA- 98.0 0.0022 4.8E-08 65.2 23.6 198 303-523 14-239 (248)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.044 9.6E-07 63.5 36.7 61 799-861 441-501 (527)
348 COG0823 TolB Periplasmic compo 98.0 0.00088 1.9E-08 74.4 21.6 195 413-619 188-390 (425)
349 PF04053 Coatomer_WDAD: Coatom 97.9 0.0017 3.6E-08 72.5 23.2 223 368-629 28-263 (443)
350 PF11768 DUF3312: Protein of u 97.9 0.017 3.6E-07 63.8 29.6 94 533-630 238-331 (545)
351 COG3490 Uncharacterized protei 97.9 0.0061 1.3E-07 60.3 22.6 256 556-890 69-346 (366)
352 KOG2659 LisH motif-containing 97.9 9.5E-06 2.1E-10 78.0 3.2 144 2-159 47-204 (228)
353 PF06977 SdiA-regulated: SdiA- 97.8 0.0076 1.6E-07 61.3 23.9 215 814-1034 16-247 (248)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.075 1.6E-06 61.7 34.9 150 843-994 272-500 (527)
355 PF04053 Coatomer_WDAD: Coatom 97.8 0.0065 1.4E-07 67.8 25.2 219 779-1039 33-264 (443)
356 KOG3621 WD40 repeat-containing 97.8 0.0033 7.2E-08 70.0 22.1 197 601-892 36-244 (726)
357 COG3391 Uncharacterized conser 97.8 0.0079 1.7E-07 66.9 26.0 208 780-995 75-294 (381)
358 PF08596 Lgl_C: Lethal giant l 97.8 0.0061 1.3E-07 67.1 24.6 281 712-1039 3-337 (395)
359 PF02897 Peptidase_S9_N: Proly 97.8 0.02 4.2E-07 65.3 30.0 249 374-632 125-408 (414)
360 PF04841 Vps16_N: Vps16, N-ter 97.8 0.013 2.9E-07 65.5 27.5 199 784-995 34-257 (410)
361 PF08596 Lgl_C: Lethal giant l 97.8 0.0075 1.6E-07 66.4 24.5 254 312-572 3-324 (395)
362 PRK13616 lipoprotein LpqB; Pro 97.7 0.0017 3.7E-08 75.4 19.5 187 779-979 350-563 (591)
363 COG3391 Uncharacterized conser 97.6 0.15 3.2E-06 56.8 32.2 251 374-637 32-292 (381)
364 COG3490 Uncharacterized protei 97.6 0.018 4E-07 57.1 20.6 233 783-1035 72-346 (366)
365 PF00780 CNH: CNH domain; Int 97.5 0.062 1.3E-06 57.2 26.9 235 720-993 5-264 (275)
366 PF04841 Vps16_N: Vps16, N-ter 97.5 0.056 1.2E-06 60.5 27.1 195 767-982 73-285 (410)
367 PF00780 CNH: CNH domain; Int 97.5 0.081 1.7E-06 56.3 27.6 231 382-638 5-265 (275)
368 COG3386 Gluconolactonase [Carb 97.5 0.022 4.7E-07 60.3 22.0 223 316-574 30-275 (307)
369 KOG1008 Uncharacterized conser 97.4 5.2E-05 1.1E-09 82.5 1.7 204 310-539 56-275 (783)
370 KOG1008 Uncharacterized conser 97.4 9.3E-05 2E-09 80.6 3.4 204 463-693 58-276 (783)
371 COG3386 Gluconolactonase [Carb 97.4 0.054 1.2E-06 57.3 23.7 196 785-994 31-252 (307)
372 PF08553 VID27: VID27 cytoplas 97.4 0.0093 2E-07 70.2 19.3 70 555-628 578-647 (794)
373 PF08553 VID27: VID27 cytoplas 97.4 0.01 2.2E-07 69.8 19.3 147 831-984 492-647 (794)
374 TIGR03074 PQQ_membr_DH membran 97.3 0.75 1.6E-05 55.4 40.0 206 433-638 196-487 (764)
375 PF10647 Gmad1: Lipoprotein Lp 97.2 0.11 2.3E-06 54.0 23.3 202 821-1048 25-245 (253)
376 PRK10115 protease 2; Provision 97.2 0.55 1.2E-05 56.6 32.4 246 373-630 127-396 (686)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.14 3.1E-06 56.2 24.9 83 777-859 306-407 (415)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.097 2.1E-06 57.5 23.2 82 507-594 309-408 (415)
379 PRK10115 protease 2; Provision 97.2 0.72 1.6E-05 55.6 32.9 244 312-587 128-397 (686)
380 PF14870 PSII_BNR: Photosynthe 97.1 0.55 1.2E-05 49.5 26.5 157 817-981 142-301 (302)
381 PF03178 CPSF_A: CPSF A subuni 97.0 0.026 5.7E-07 61.5 17.7 211 757-981 5-262 (321)
382 PF03178 CPSF_A: CPSF A subuni 97.0 0.076 1.7E-06 57.9 21.2 180 843-1039 3-204 (321)
383 KOG4640 Anaphase-promoting com 97.0 0.0027 5.7E-08 69.8 9.3 93 312-427 22-115 (665)
384 PF10647 Gmad1: Lipoprotein Lp 97.0 0.099 2.2E-06 54.3 20.4 147 779-930 24-183 (253)
385 KOG2395 Protein involved in va 97.0 0.037 8.1E-07 59.8 17.0 149 832-985 346-501 (644)
386 KOG0396 Uncharacterized conser 97.0 0.00053 1.2E-08 70.1 3.2 141 12-166 154-298 (389)
387 PF05096 Glu_cyclase_2: Glutam 96.9 0.48 1E-05 48.1 23.6 187 779-974 45-250 (264)
388 smart00320 WD40 WD40 repeats. 96.9 0.0024 5.2E-08 43.4 5.3 39 852-890 2-40 (40)
389 PHA02713 hypothetical protein; 96.9 0.08 1.7E-06 62.1 20.7 224 800-1050 273-544 (557)
390 KOG4640 Anaphase-promoting com 96.9 0.0049 1.1E-07 67.9 9.5 94 819-921 20-114 (665)
391 PF07995 GSDH: Glucose / Sorbo 96.8 1 2.3E-05 49.0 27.4 68 556-623 254-330 (331)
392 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.088 1.9E-06 45.1 14.6 65 557-627 2-70 (111)
393 PRK13684 Ycf48-like protein; P 96.8 1.2 2.5E-05 48.6 29.0 157 862-1037 172-331 (334)
394 KOG2395 Protein involved in va 96.8 0.036 7.8E-07 59.9 14.7 144 383-538 344-499 (644)
395 smart00320 WD40 WD40 repeats. 96.7 0.0032 6.9E-08 42.8 4.8 37 302-339 4-40 (40)
396 PF07995 GSDH: Glucose / Sorbo 96.7 0.74 1.6E-05 50.1 25.1 240 780-1032 3-330 (331)
397 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.12 2.7E-06 44.2 13.4 100 865-979 2-109 (111)
398 PF14870 PSII_BNR: Photosynthe 96.5 1.5 3.3E-05 46.3 30.5 230 780-1034 63-301 (302)
399 PF14727 PHTB1_N: PTHB1 N-term 96.5 2 4.4E-05 47.6 30.9 288 721-1050 36-372 (418)
400 KOG2079 Vacuolar assembly/sort 96.4 0.061 1.3E-06 63.3 14.9 104 383-492 98-202 (1206)
401 PHA02713 hypothetical protein; 96.3 0.19 4.2E-06 58.9 18.8 201 428-639 303-544 (557)
402 KOG4441 Proteins containing BT 96.2 0.43 9.4E-06 55.9 20.9 233 381-630 282-548 (571)
403 KOG4441 Proteins containing BT 96.2 0.52 1.1E-05 55.2 21.5 237 788-1050 283-557 (571)
404 COG3204 Uncharacterized protei 96.2 1.7 3.8E-05 44.2 23.4 213 815-1033 81-308 (316)
405 KOG2079 Vacuolar assembly/sort 96.2 0.36 7.8E-06 57.3 19.3 99 325-448 101-202 (1206)
406 PF15390 DUF4613: Domain of un 96.1 0.18 4E-06 55.8 15.7 160 820-988 20-190 (671)
407 COG3204 Uncharacterized protei 96.1 1.6 3.6E-05 44.4 20.7 205 708-938 83-309 (316)
408 PF05694 SBP56: 56kDa selenium 96.1 1.4 2.9E-05 48.0 21.5 253 474-730 86-393 (461)
409 PF05694 SBP56: 56kDa selenium 95.9 1.5 3.3E-05 47.6 21.1 249 516-796 86-391 (461)
410 KOG4499 Ca2+-binding protein R 95.8 1.2 2.5E-05 43.5 17.5 135 417-565 108-264 (310)
411 PF05096 Glu_cyclase_2: Glutam 95.7 2.9 6.2E-05 42.7 22.2 193 712-932 46-250 (264)
412 PF12894 Apc4_WD40: Anaphase-p 95.6 0.032 6.9E-07 39.7 5.0 33 311-345 12-44 (47)
413 PRK13684 Ycf48-like protein; P 95.5 3.4 7.3E-05 45.1 22.9 155 819-982 172-329 (334)
414 PF15390 DUF4613: Domain of un 95.4 6 0.00013 44.5 27.3 58 917-974 343-404 (671)
415 TIGR03074 PQQ_membr_DH membran 95.4 3.1 6.7E-05 50.3 23.8 160 433-593 262-486 (764)
416 PF12894 Apc4_WD40: Anaphase-p 95.4 0.071 1.5E-06 37.9 6.2 31 372-402 11-41 (47)
417 KOG4499 Ca2+-binding protein R 95.2 3.5 7.6E-05 40.4 19.4 47 783-829 216-263 (310)
418 KOG2444 WD40 repeat protein [G 95.2 0.057 1.2E-06 52.3 6.7 103 791-893 71-178 (238)
419 PF12234 Rav1p_C: RAVE protein 94.8 0.68 1.5E-05 53.6 15.4 125 814-940 24-155 (631)
420 TIGR02604 Piru_Ver_Nterm putat 94.8 5.9 0.00013 44.0 22.7 138 779-929 14-200 (367)
421 COG4257 Vgb Streptogramin lyas 94.6 3.8 8.1E-05 41.3 17.5 211 821-1050 63-273 (353)
422 PHA03098 kelch-like protein; P 94.6 1.5 3.3E-05 51.8 18.5 188 788-989 293-516 (534)
423 PHA03098 kelch-like protein; P 94.5 1.6 3.4E-05 51.7 18.3 153 474-631 342-514 (534)
424 PF14727 PHTB1_N: PTHB1 N-term 94.3 11 0.00024 41.9 32.5 281 319-632 33-364 (418)
425 PF03022 MRJP: Major royal jel 94.3 4.9 0.00011 42.6 19.4 189 781-973 3-254 (287)
426 KOG1898 Splicing factor 3b, su 94.3 17 0.00036 44.0 32.9 104 784-892 939-1048(1205)
427 PF12234 Rav1p_C: RAVE protein 94.2 1.1 2.3E-05 52.0 15.0 113 419-539 31-156 (631)
428 KOG2280 Vacuolar assembly/sort 94.1 2.8 6.1E-05 48.3 17.7 183 800-994 65-256 (829)
429 COG1520 FOG: WD40-like repeat 94.1 11 0.00023 42.1 23.0 201 786-994 65-278 (370)
430 PF10168 Nup88: Nuclear pore c 94.1 6.4 0.00014 47.3 21.7 68 332-401 41-112 (717)
431 KOG2444 WD40 repeat protein [G 94.0 0.19 4.2E-06 48.8 7.4 105 384-494 70-178 (238)
432 PF11725 AvrE: Pathogenicity f 94.0 25 0.00055 45.1 27.2 151 307-494 359-517 (1774)
433 PF10168 Nup88: Nuclear pore c 93.9 17 0.00038 43.7 24.8 95 777-894 83-181 (717)
434 PF14761 HPS3_N: Hermansky-Pud 93.9 2.3 5.1E-05 41.5 14.4 150 875-1036 29-213 (215)
435 TIGR03118 PEPCTERM_chp_1 conse 93.9 9.1 0.0002 39.5 23.8 214 419-638 24-289 (336)
436 PHA02790 Kelch-like protein; P 93.9 3.1 6.7E-05 48.1 18.5 185 788-988 270-474 (480)
437 KOG1898 Splicing factor 3b, su 93.8 20 0.00043 43.4 40.3 114 918-1043 939-1054(1205)
438 PLN00033 photosystem II stabil 93.7 14 0.0003 41.1 27.2 149 822-981 241-396 (398)
439 COG4257 Vgb Streptogramin lyas 93.7 8.9 0.00019 38.7 20.3 245 312-630 63-307 (353)
440 PF14761 HPS3_N: Hermansky-Pud 93.6 4.3 9.4E-05 39.8 15.7 158 780-940 19-213 (215)
441 KOG3630 Nuclear pore complex, 93.5 0.66 1.4E-05 55.4 11.9 146 778-929 100-260 (1405)
442 COG3823 Glutamine cyclotransfe 93.5 3.2 6.9E-05 39.9 14.1 175 789-972 55-247 (262)
443 COG5276 Uncharacterized conser 93.3 11 0.00023 38.6 19.8 151 780-944 88-244 (370)
444 TIGR02604 Piru_Ver_Nterm putat 93.3 1.9 4.1E-05 47.9 15.1 149 820-973 14-202 (367)
445 KOG2377 Uncharacterized conser 93.2 2.7 5.8E-05 45.3 14.5 146 821-973 24-172 (657)
446 PF10214 Rrn6: RNA polymerase 93.1 29 0.00062 42.9 27.2 172 777-985 78-277 (765)
447 KOG1900 Nuclear pore complex, 93.1 6 0.00013 48.9 19.0 159 831-991 90-280 (1311)
448 COG4590 ABC-type uncharacteriz 93.0 1.1 2.3E-05 47.9 11.3 159 777-945 219-390 (733)
449 TIGR03118 PEPCTERM_chp_1 conse 93.0 13 0.00028 38.5 21.4 240 601-872 25-307 (336)
450 KOG1916 Nuclear protein, conta 92.8 0.17 3.8E-06 58.4 5.8 131 306-462 128-283 (1283)
451 PHA02790 Kelch-like protein; P 92.1 7.9 0.00017 44.8 18.5 182 831-1037 271-470 (480)
452 COG3292 Predicted periplasmic 92.0 25 0.00055 39.6 24.9 63 416-485 163-226 (671)
453 TIGR03606 non_repeat_PQQ dehyd 91.9 26 0.00056 39.6 28.8 66 306-384 25-90 (454)
454 PF08728 CRT10: CRT10; InterP 91.8 5.4 0.00012 46.9 16.1 174 790-984 49-246 (717)
455 KOG2280 Vacuolar assembly/sort 91.7 16 0.00035 42.4 19.2 165 374-548 85-255 (829)
456 PF10313 DUF2415: Uncharacteri 91.6 0.49 1.1E-05 32.6 4.6 33 311-343 1-35 (43)
457 PLN00033 photosystem II stabil 91.6 26 0.00056 39.0 32.4 150 865-1034 241-396 (398)
458 KOG2377 Uncharacterized conser 91.5 1.2 2.5E-05 47.8 9.5 122 310-451 66-187 (657)
459 TIGR03548 mutarot_permut cycli 91.2 21 0.00046 38.8 19.9 112 873-989 72-199 (323)
460 KOG1916 Nuclear protein, conta 91.1 0.19 4.1E-06 58.1 3.6 228 799-1040 153-426 (1283)
461 PF13449 Phytase-like: Esteras 91.0 13 0.00029 40.4 17.7 151 819-971 19-231 (326)
462 KOG3630 Nuclear pore complex, 90.8 2.7 5.8E-05 50.7 12.5 147 419-571 102-260 (1405)
463 PF07676 PD40: WD40-like Beta 90.7 0.82 1.8E-05 31.1 5.3 32 307-338 5-38 (39)
464 PF03022 MRJP: Major royal jel 90.4 27 0.00058 37.1 19.0 167 442-616 35-253 (287)
465 COG1520 FOG: WD40-like repeat 89.9 36 0.00079 37.8 23.2 202 383-595 68-279 (370)
466 PF10433 MMS1_N: Mono-function 89.7 47 0.001 38.9 41.8 80 790-872 418-503 (504)
467 PRK14131 N-acetylneuraminic ac 89.6 39 0.00084 37.7 20.6 40 578-619 314-353 (376)
468 COG3823 Glutamine cyclotransfe 89.5 21 0.00046 34.6 16.1 172 433-615 58-245 (262)
469 TIGR03548 mutarot_permut cycli 89.5 35 0.00077 37.1 21.6 70 474-543 123-198 (323)
470 PF10313 DUF2415: Uncharacteri 89.4 1.3 2.9E-05 30.5 5.2 32 373-404 1-35 (43)
471 KOG1900 Nuclear pore complex, 89.3 5 0.00011 49.5 13.4 173 295-494 64-273 (1311)
472 PF14781 BBS2_N: Ciliary BBSom 89.2 16 0.00035 32.8 13.4 118 315-456 3-132 (136)
473 KOG1983 Tomosyn and related SN 88.8 7.5 0.00016 48.8 15.2 69 914-988 200-268 (993)
474 KOG2817 Predicted E3 ubiquitin 88.7 0.24 5.2E-06 52.2 1.9 95 2-98 137-245 (394)
475 PF13449 Phytase-like: Esteras 88.6 35 0.00075 37.1 18.6 160 709-879 18-231 (326)
476 COG5167 VID27 Protein involved 88.5 23 0.00049 39.2 16.1 153 420-584 469-632 (776)
477 KOG4460 Nuclear pore complex, 87.9 9 0.00019 42.3 12.8 96 954-1050 103-211 (741)
478 PLN02193 nitrile-specifier pro 87.6 60 0.0013 37.5 25.4 154 831-989 228-415 (470)
479 PLN02193 nitrile-specifier pro 87.5 61 0.0013 37.4 22.2 157 433-590 231-416 (470)
480 KOG2247 WD40 repeat-containing 87.4 0.27 5.9E-06 53.0 1.4 243 715-993 39-289 (615)
481 PF07569 Hira: TUP1-like enhan 87.4 4.7 0.0001 40.7 10.2 75 918-993 16-104 (219)
482 PF12657 TFIIIC_delta: Transcr 87.2 3.3 7.1E-05 40.1 8.7 31 373-403 86-122 (173)
483 KOG4659 Uncharacterized conser 86.9 94 0.002 39.0 33.4 24 709-732 660-683 (1899)
484 PF11725 AvrE: Pathogenicity f 86.9 1.1E+02 0.0024 39.8 25.1 135 837-980 618-768 (1774)
485 TIGR03606 non_repeat_PQQ dehyd 86.6 16 0.00034 41.2 14.5 113 862-975 29-166 (454)
486 PF07250 Glyoxal_oxid_N: Glyox 86.6 13 0.00028 37.8 12.7 148 488-638 49-207 (243)
487 PRK13613 lipoprotein LpqB; Pro 86.5 44 0.00096 39.5 18.7 189 780-978 364-576 (599)
488 PF07569 Hira: TUP1-like enhan 86.4 3.7 8E-05 41.4 8.8 78 870-947 18-101 (219)
489 PRK13614 lipoprotein LpqB; Pro 86.3 61 0.0013 38.0 19.4 161 780-944 344-521 (573)
490 COG5276 Uncharacterized conser 85.7 47 0.001 34.3 26.0 276 555-892 87-369 (370)
491 PRK13615 lipoprotein LpqB; Pro 85.6 80 0.0017 36.9 21.5 151 822-984 336-502 (557)
492 PLN02153 epithiospecifier prot 85.4 63 0.0014 35.5 21.6 162 873-1047 85-292 (341)
493 PLN02153 epithiospecifier prot 85.3 63 0.0014 35.4 23.5 154 831-989 85-289 (341)
494 PF05935 Arylsulfotrans: Aryls 85.2 48 0.0011 38.2 18.2 194 831-1035 114-365 (477)
495 PF08728 CRT10: CRT10; InterP 84.9 3.7 8.1E-05 48.2 8.9 135 312-448 102-245 (717)
496 PRK13614 lipoprotein LpqB; Pro 84.7 54 0.0012 38.4 18.0 158 821-986 344-520 (573)
497 COG4590 ABC-type uncharacteriz 84.6 2.6 5.5E-05 45.3 6.7 172 810-989 211-391 (733)
498 COG3292 Predicted periplasmic 84.2 81 0.0018 35.8 21.9 272 312-624 166-443 (671)
499 PF12657 TFIIIC_delta: Transcr 83.9 6.3 0.00014 38.2 8.9 31 863-893 86-122 (173)
500 KOG1983 Tomosyn and related SN 83.6 22 0.00047 44.8 15.3 69 507-588 200-268 (993)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-72 Score=549.15 Aligned_cols=472 Identities=21% Similarity=0.297 Sum_probs=401.5
Q ss_pred CccccccCcccc---HHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcchHHHHHHHHhhcc
Q 001490 2 HRLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLK 78 (1068)
Q Consensus 2 ~~le~esg~~~~---~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~~~L~~~l~ 78 (1068)
.+||.|||+.++ ++.|.++||+|+|+.++..+..+...++...+ ++.||+.||+|||+|..|....|+.+||++..
T Consensus 38 ~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~-ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~ 116 (519)
T KOG0293|consen 38 PLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRK-EAMFLVNKQIFLEFLKTGSISHALPVLRNPVL 116 (519)
T ss_pred hhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhH-HHHHHHHHHHHHHHHhhccHhhhhHhhhcchh
Confidence 469999999984 99999999999999999999988766666544 48999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhhhcccCccChhhhhhhcCChHHHHHHHHHHHHhhhccCccccccccCCCcchhHHHHHHHhhccc
Q 001490 79 DFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNW 158 (1068)
Q Consensus 79 p~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~ 158 (1068)
+| .++.+++|+|+.-|..++...+.+... .......|.+|+++|+++|||++| ||++||++||+||+.|
T Consensus 117 ~l-r~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---------lP~rRLehLl~qAv~~ 185 (519)
T KOG0293|consen 117 YL-RKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---------LPKRRLEHLLEQAVKY 185 (519)
T ss_pred hh-hhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc---------CChHHHHHHHHHHHHH
Confidence 99 679999999998777765332222221 123367899999999999999999 9999999999999999
Q ss_pred chhcccCCCCCCCCCcceeecccCCCCCCccCCCCCCCCCCCCCCCCCCcccccCCcccccccccccccCCCCCCccccc
Q 001490 159 QHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTM 238 (1068)
Q Consensus 159 Q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1068)
|+++|+||| +.+..|||.||.|++ .|+ |+++.|
T Consensus 186 Q~d~cvyhn-sldsvsll~Dh~c~~------~qi------p~qt~q---------------------------------- 218 (519)
T KOG0293|consen 186 QRDSCVYHN-SLDSVSLLSDHFCGR------LQI------PSQTWQ---------------------------------- 218 (519)
T ss_pred HHhHhHHhc-ccchhhhhhhcccCc------ccC------Cchhhh----------------------------------
Confidence 999999999 777789999999998 663 666654
Q ss_pred cCCCCCCCCcCCccccccCCCCceeeecCccCCCCCccCCCCccccccccccCCCccCCCccceeeecccCCCCceEEEE
Q 001490 239 DRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDF 318 (1068)
Q Consensus 239 ~~~~~~~~~~~~~~~r~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~ 318 (1068)
+|..|+++||.+.|
T Consensus 219 ------------------------------------------------------------------il~~htdEVWfl~F 232 (519)
T KOG0293|consen 219 ------------------------------------------------------------------ILQDHTDEVWFLQF 232 (519)
T ss_pred ------------------------------------------------------------------hHhhCCCcEEEEEE
Confidence 46889999999999
Q ss_pred cCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEE
Q 001490 319 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 398 (1068)
Q Consensus 319 spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~v 398 (1068)
|++|+ +||+++.|.+..||++.....+.- ...+.+|..+|..+.||||.+||++|+.+..+.+
T Consensus 233 S~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 233 SHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred cCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 99998 679999999999999865444221 1128899999999999999999999999999999
Q ss_pred EEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-CcEEEEeeeecCCccE
Q 001490 399 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHF 477 (1068)
Q Consensus 399 wd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~ 477 (1068)
||+.+|....... .+|...+.+++|.|||. .+++|+.|++|..||+. |..+..+++-. ..|.++++.+ ||++
T Consensus 296 wDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~--Dgk~ 368 (519)
T KOG0293|consen 296 WDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITY--DGKY 368 (519)
T ss_pred ccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcC--CCcE
Confidence 9999998765332 24668999999999999 79999999999999964 55566665543 5688888855 8899
Q ss_pred EEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCe
Q 001490 478 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 557 (1068)
Q Consensus 478 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v 557 (1068)
+++.+.|..|++++..+..... +.....+|++++.|.|++++++.-. +..+.+||++....++++.||.+....|
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~LWDl~e~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHLWDLEENKLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEEeecchhhHHHHhhcccccceEE
Confidence 9999999999999988766554 3344568999999999999988765 4459999999999999999999666667
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec-CCCEEEEEECCCeEEEEECCC
Q 001490 558 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPE 629 (1068)
Q Consensus 558 ~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~ 629 (1068)
.++.-..+..++++||+|+.|+||+..+|+++..+.+|.. .|++|+|+| +..++|++++||+|+||-...
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 7766666778999999999999999999999999998865 599999999 677899999999999998663
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-59 Score=494.44 Aligned_cols=577 Identities=18% Similarity=0.256 Sum_probs=493.1
Q ss_pred EEEcCCCCeEEEEEcCcCcEEEEecCCCcce-eeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCc
Q 001490 316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 394 (1068)
Q Consensus 316 v~~spdg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~ 394 (1068)
++||++|+ +|+|... ..|.+-|+.+++.. ... -......+++++.+||+++|++++...
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 5677654 56999999999873 211 223557899999999999999999999
Q ss_pred EEEEEEccCCCcccceEEEcc-ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecC
Q 001490 395 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 473 (1068)
Q Consensus 395 ~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 473 (1068)
.+++|++.+++.++ .++. |++||.-++|+|.|. ++++|+.|+.+++||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998877 4455 999999999999997 99999999999999999999999999999999999999998
Q ss_pred CccEEEEEEcCCcEEEEeCCCCCc-eEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001490 474 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552 (1068)
Q Consensus 474 ~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 552 (1068)
+-..|++|..|+++++||+..... ...+..|...+++++|++|+..+++++. |..+.+||+.+-+..+++...+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996554 6788889999999999999999999987 6689999998877777766544
Q ss_pred ccCCeEEEEEecC-----CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490 553 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 627 (1068)
Q Consensus 553 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 627 (1068)
.+.++.+-++ +.+++++|++|.+++||.++++.+....... .+.+..+...+....++..+.|..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777888777 7799999999999999999998876655443 233666666666667777788899999999
Q ss_pred CCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCc
Q 001490 628 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 707 (1068)
Q Consensus 628 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 707 (1068)
++.+....+-|..+.|..+.|- .|+.+.++.++..+.+|+++..+ ..|. .+ .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~~---~~c~--ii--~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLPT---SYCQ--II--P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecCC---CceE--EE--e
Confidence 9999999999999999888886 57788999999999999996553 2333 22 4
Q ss_pred cccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001490 708 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 787 (1068)
Q Consensus 708 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 787 (1068)
+|...|.++....+|.+|++++.|..+++|.++.+.... ... -...+|...|.+++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~--------------------~~~--a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS--------------------LCV--AQANGHTNSVGAVAGS 420 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh--------------------hhh--hhhcccccccceeeec
Confidence 599999999988889999999999999999884321100 000 1112599999999998
Q ss_pred cCC-CEEEEEe-CCeEEEEEccCcee-----E----EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeee
Q 001490 788 KND-AYLFSAS-GGVISLYIVMTFKT-----I----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 856 (1068)
Q Consensus 788 ~dg-~~l~~~~-dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 856 (1068)
..+ .++++++ |.++++|++...+. . .+...|...|+|++++| +.+++|||+.|++.+||+++.+....
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 766 5777777 89999999975221 1 12346899999999999 89999999999999999999999999
Q ss_pred eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeE
Q 001490 857 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 935 (1068)
Q Consensus 857 ~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i 935 (1068)
++.||...|+++.|+|..+.++|+|.|++|+||.+++ ..++++++||.. .|..+.|-.+|+.|++ +.||-+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence 9999999999999999999999999999999999998 458999999987 8999999999999998 799999
Q ss_pred EEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001490 936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 986 (1068)
Q Consensus 936 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~ 986 (1068)
++|++.+++|... +..|..+|++++.++++.+++||+.||.|.+|.=.+.
T Consensus 572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999998 7899999999999999999999999999999965543
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-55 Score=467.38 Aligned_cols=550 Identities=14% Similarity=0.209 Sum_probs=461.1
Q ss_pred cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecC-CCcceEEEEECCCCCE
Q 001490 308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSL 386 (1068)
Q Consensus 308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~spdg~~ 386 (1068)
+-.+.+++++.+||++ +|++++....+++|++.+|+.++. +.. |+++|.-++|+|.|..
T Consensus 60 ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~L 119 (775)
T KOG0319|consen 60 EDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTL 119 (775)
T ss_pred cchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCce
Confidence 4567899999999998 678888989999999999988765 334 9999999999999999
Q ss_pred EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccCCCcEE
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVY 465 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 465 (1068)
||+|+.|+.++|||+..+.+.. .|.||.+.|.++.|.|+-.+.+|++|+.|+++++||+.+... +..+..|...|+
T Consensus 120 lAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vt 196 (775)
T KOG0319|consen 120 LATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVT 196 (775)
T ss_pred EEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhhee
Confidence 9999999999999999987665 789999999999999998766899999999999999996554 888899999999
Q ss_pred EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC-----CCEEEEEeeCCCCceeEEEEeCCC
Q 001490 466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESE 540 (1068)
Q Consensus 466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-----~~~l~~~~~~~~~~~~i~~wd~~~ 540 (1068)
+++|.+ |+..+++++.|..+.+||+..-+........ ..+.++.+-++ |.++++.+. ++.+++||.++
T Consensus 197 sL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es 269 (775)
T KOG0319|consen 197 SLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSES 269 (775)
T ss_pred eeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecC----CceEEEEeccc
Confidence 999976 6789999999999999999655544444332 25566666666 668888875 67899999999
Q ss_pred CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE-ecCCCEEEEEECC
Q 001490 541 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANE 619 (1068)
Q Consensus 541 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~d 619 (1068)
++++.+..... ...+..+...+....++....|..+.++|.++.+....+.+.. ..|..++| .|+.++|++++..
T Consensus 270 ~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 270 GKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred chhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCC
Confidence 98876665543 2336666666777788888889999999999999998887553 45888876 4678999999999
Q ss_pred CeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCccc
Q 001490 620 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 699 (1068)
Q Consensus 620 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 699 (1068)
+.+++|+..+..+. .+.+|.+.|.++... ..|-++++++.|+++++|.++.... .
T Consensus 346 ~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~----------------------~~g~llat~sKD~svilWr~~~~~~--~ 400 (775)
T KOG0319|consen 346 PELRLYTLPTSYCQ-IIPGHTEAVLSLDVW----------------------SSGDLLATGSKDKSVILWRLNNNCS--K 400 (775)
T ss_pred CceEEEecCCCceE-EEeCchhheeeeeec----------------------ccCcEEEEecCCceEEEEEecCCcc--h
Confidence 99999998887666 889999999888743 4567899999999999998832211 1
Q ss_pred ceeecCCccccccEEEEEEecCC-ceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCC
Q 001490 700 QSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 778 (1068)
Q Consensus 700 ~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1068)
....-...+|.+.|.+++++..+ ..+++++.|+++++|+++..+.... + ...........|.
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~---------~~~~~~~t~~aHd 463 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------P---------IVLTCRYTERAHD 463 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------c---------ceehhhHHHHhhc
Confidence 11112235799999999997765 4578888999999999876221100 0 0122222334599
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee
Q 001490 779 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 857 (1068)
Q Consensus 779 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 857 (1068)
..|+|++++|+.+++|+|+ |.+.+||+++......++.+|...+.|+.|+| ..+.+|+++.|++|+||.+.+..++++
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT 542 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKT 542 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeee
Confidence 9999999999999999999 89999999999999999999999999999999 889999999999999999999999999
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEE
Q 001490 858 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 936 (1068)
Q Consensus 858 ~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~ 936 (1068)
|.||+..|..+.|-.+|+.|+|++.||.|++|++++++ |...+..|.. .|.+++.+|.+.++++ +.|+.|.
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e-----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEE
Confidence 99999999999999999999999999999999999966 7888888887 9999999999999998 7899999
Q ss_pred EEECCC
Q 001490 937 IYEAEE 942 (1068)
Q Consensus 937 vwd~~~ 942 (1068)
+|.=.+
T Consensus 615 ~wkD~T 620 (775)
T KOG0319|consen 615 FWKDVT 620 (775)
T ss_pred EeecCc
Confidence 996443
No 4
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.7e-53 Score=429.02 Aligned_cols=576 Identities=15% Similarity=0.189 Sum_probs=463.7
Q ss_pred eEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCC
Q 001490 314 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 393 (1068)
Q Consensus 314 ~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d 393 (1068)
.-+.-.|.|..++.+.+ ..|.+-++++...... +.+|...++-..|||.|-|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence 34556788888888765 6788989887765533 78899999999999999999999999
Q ss_pred cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEE-eCCCcEEEEECCCCceeeEeccCCCcEEEEeeeec
Q 001490 394 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 472 (1068)
Q Consensus 394 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~ 472 (1068)
|+|+|||....+.+.+ .+++.-.++|..++|+.|+++ ++++| +.++..+++-.++|..+..+.||...|+++.|-|+
T Consensus 81 G~vRIWdtt~~~hiLK-nef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHILK-NEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred CcEEEEeccCcceeee-eeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 9999999977443322 256678899999999999995 33333 33434444444588889999999999999999876
Q ss_pred CCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001490 473 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552 (1068)
Q Consensus 473 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 552 (1068)
.. -.++++++|++|.+|+-...+-...+..|..-|.++.|+|||.++++.+. |+.+++||-.+|+.+..+.....
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 33 57999999999999988887888888899999999999999999999987 66799999999999999996555
Q ss_pred ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCC-CceEEEecCCCEEEEEECCCeEEEEECCCCc
Q 001490 553 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPESN 631 (1068)
Q Consensus 553 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 631 (1068)
|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++........ ...+.|- +..|++.+.+|.|.+++.....
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC
Confidence 669999999999999999999999999999999999999986654221 2233343 6689999999999999999999
Q ss_pred eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccc
Q 001490 632 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 711 (1068)
Q Consensus 632 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 711 (1068)
.+..+.+|...|++++.+ ++++++.+++.||.|.-|+...+.... +....|..
T Consensus 312 ~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~n 364 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHTN 364 (603)
T ss_pred hhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCccccc-----cccccccc
Confidence 999999999999999996 788999999999999999987654433 23345899
Q ss_pred cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490 712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 791 (1068)
Q Consensus 712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 791 (1068)
.|.+++.+..+. +++++.|.++++.++..+...... . .+ -.....+++..+|+.
T Consensus 365 qI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 365 QIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDGG 418 (603)
T ss_pred eEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCCC
Confidence 999999988776 788888889988776443221100 0 01 123344899999998
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee--eeeecccccCeEEEE
Q 001490 792 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGLV 869 (1068)
Q Consensus 792 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~ 869 (1068)
+++.+.++.|.+..-.++ +..+. ..-...++|++| ++..+|+|+.||.|+||.+..++. ...+..|.++|++++
T Consensus 419 ~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred EEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 888888766666542222 11222 334678999999 999999999999999999987653 345567999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeee
Q 001490 870 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 948 (1068)
Q Consensus 870 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~ 948 (1068)
||||+.+||++...+.+.+||+.+.+... ....-|. ..|.+++|||+.+++|+ +-|..|.||+++.......
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 99999999999999999999999876422 1112233 37999999999999999 6899999999998776666
Q ss_pred eccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001490 949 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 949 ~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~ 984 (1068)
....|...|+.+.|..+. .|++.+.|..|++|++.
T Consensus 568 iknAH~~gVn~v~wlde~-tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDES-TVVSSGQDANIKVWNVT 602 (603)
T ss_pred eccccccCceeEEEecCc-eEEeccCcceeEEeccc
Confidence 678898889999998654 68889999999999875
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-50 Score=412.37 Aligned_cols=542 Identities=12% Similarity=0.196 Sum_probs=433.1
Q ss_pred eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC
Q 001490 302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 381 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s 381 (1068)
....+.+|...++-..|||.|- ++|+|...|.|||||....+.+...+|+ .-.++|..++|+
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd 112 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWD 112 (603)
T ss_pred ceeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeC
Confidence 3566788999999999999996 7899999999999999876655544443 245799999999
Q ss_pred CCCCEEEEEeCC--cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001490 382 PDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 459 (1068)
Q Consensus 382 pdg~~las~~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 459 (1068)
+|+++|++.+.. +..+++-+++|..+. ++.||...|.+++|-|.... .++||++|++|.+|+=.--+...++..
T Consensus 113 ~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~ 188 (603)
T KOG0318|consen 113 FDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFRE 188 (603)
T ss_pred CCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccc
Confidence 999999887543 334444444454444 67899999999999998776 899999999999998555566677888
Q ss_pred CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec---CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001490 460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 536 (1068)
Q Consensus 460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 536 (1068)
|...|+++.|+| ||.++++++.||+|.+||-.+++.+..+. .|.+.|.+++|+||++.+++++. +.++++|
T Consensus 189 HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIW 262 (603)
T KOG0318|consen 189 HSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIW 262 (603)
T ss_pred cccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEE
Confidence 999999999977 78899999999999999999999988887 78889999999999999999987 5679999
Q ss_pred eCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001490 537 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 616 (1068)
Q Consensus 537 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 616 (1068)
|+.+.++++++.....-......+.|. +..|++.+-+|+|.+++...+..+..+.+|. ..|++++.+|++++|++|
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSG 338 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEee
Confidence 999999999987655323444555665 5689999999999999999999888888775 469999999999999999
Q ss_pred ECCCeEEEEECCCCceeeec-cccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccC
Q 001490 617 ANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 695 (1068)
Q Consensus 617 ~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 695 (1068)
+.||.|.-|+...+..-... ++|...|.+++.+ +...+++.+.|.++++.++....
T Consensus 339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred ccCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCc
Confidence 99999999999988655443 6788888877765 23457888899999998765332
Q ss_pred CcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCC
Q 001490 696 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 775 (1068)
Q Consensus 696 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1068)
-.......+ .....+++..+++..++.....+.+.+-+... ....
T Consensus 396 ~t~~~~~~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~----- 440 (603)
T KOG0318|consen 396 YTKSEVVKL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI----- 440 (603)
T ss_pred ccccceeec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----
Confidence 222221111 12334788888887666655554444322211 1111
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeE--EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc
Q 001490 776 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 852 (1068)
Q Consensus 776 ~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 852 (1068)
.......++|++|+++.+|+|+ |+.|+||.+..+... ..+..|.++|++++||| |+.+||+|...+.+.+||..+.
T Consensus 441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccC
Confidence 1355678999999999999998 799999999875533 34567999999999999 9999999999999999999998
Q ss_pred eeeee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe
Q 001490 853 EVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 931 (1068)
Q Consensus 853 ~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~ 931 (1068)
+.... +.-|+.+|.+++|+|+.+++|||+-|-.|.||+++.... .+.....|.. .|..+.|-.+...+-++.
T Consensus 520 ~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~~---gVn~v~wlde~tvvSsG~ 592 (603)
T KOG0318|consen 520 EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHLG---GVNSVAWLDESTVVSSGQ 592 (603)
T ss_pred ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEecccccc---CceeEEEecCceEEeccC
Confidence 76433 334999999999999999999999999999999997542 2444555655 599999999888887899
Q ss_pred CCeEEEEECC
Q 001490 932 ETHLAIYEAE 941 (1068)
Q Consensus 932 d~~i~vwd~~ 941 (1068)
|..|++|++.
T Consensus 593 Da~iK~W~v~ 602 (603)
T KOG0318|consen 593 DANIKVWNVT 602 (603)
T ss_pred cceeEEeccc
Confidence 9999999864
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-50 Score=425.39 Aligned_cols=578 Identities=15% Similarity=0.213 Sum_probs=464.5
Q ss_pred EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490 377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 456 (1068)
Q Consensus 377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 456 (1068)
.+.|++||..+++-..+ .|.++|+..++.... .-.+...|.+++.||+|. ++++....|...+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 58899999999887544 599999988764321 225677899999999999 888889999999999888888888
Q ss_pred eccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC--------ceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490 457 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 528 (1068)
Q Consensus 457 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--------~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 528 (1068)
+. ...+|.+++|+| ||++++.+ ..+.+.+|...... ....+.++-..+.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 75 678899999977 66555554 56789999764432 23356677779999999999999999986
Q ss_pred CceeEEEEeCCCCee--eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC---------------------
Q 001490 529 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 585 (1068)
Q Consensus 529 ~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--------------------- 585 (1068)
|..+++|+++..+- ...+.+|. +.|.++.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 67799999886555 55677777 9999999999999999999999999997761
Q ss_pred --CeE---------EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccc
Q 001490 586 --VQL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 654 (1068)
Q Consensus 586 --~~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 654 (1068)
++. ....-.......+.+.+|++....|+++-..|...+|++..-..++.+......|..++++.
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~---- 317 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS---- 317 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecc----
Confidence 111 00111111224588999999999999999999999999999999999988888888888863
Q ss_pred cccccccCeeeecCCCCCCcccceeeccc-ccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCcc
Q 001490 655 TGAGIANGSVSVNEDPKEDVKPEISVEAE-NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 733 (1068)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 733 (1068)
.|.+++.++.. |.+.+|+.. ...+.+..++|...+.+++++|||+++++|+.||.
T Consensus 318 ------------------tGDWiA~g~~klgQLlVweWq------sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 318 ------------------TGDWIAFGCSKLGQLLVWEWQ------SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred ------------------cCCEEEEcCCccceEEEEEee------ccceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence 45566665544 788899865 23455666779999999999999999999999999
Q ss_pred EEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeE
Q 001490 734 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 812 (1068)
Q Consensus 734 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~ 812 (1068)
|+||| ..+|.|+.++.- |...|+.+.|+..|+.+++++ ||+|+.||+...+..
T Consensus 374 VKvWn----------------------~~SgfC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 374 VKVWN----------------------TQSGFCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred EEEEe----------------------ccCceEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence 99886 456777877653 999999999999999999999 999999999999999
Q ss_pred EEecCCCC-CeEEEEEeCCCCCEEEEEECCC-eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490 813 LTIMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 813 ~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd 890 (1068)
+++..+.. ...|++..| .|.++.+|+.|. .|++|++++|+.+..+.||.++|.+++|+|+|..|+++|.|.+|++||
T Consensus 428 RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 99986554 668999999 899999999886 899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeec------c------------
Q 001490 891 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWF------P------------ 951 (1068)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~------~------------ 951 (1068)
+-..... ...++.. ..+..++|+|||+.||+ +-||.|.+||...+.....+- .
T Consensus 507 if~s~~~-vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 507 IFSSSGT-VETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred eeccCce-eeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 9763211 1122222 14889999999999998 789999999998766553211 0
Q ss_pred -CCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEecccc----------------------------------
Q 001490 952 -ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA---------------------------------- 996 (1068)
Q Consensus 952 -~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~---------------------------------- 996 (1068)
......+.+++|+||.+|++||....|.+|++.++-+++++....
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~ 658 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG 658 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence 125788999999999999999999999999999999998886110
Q ss_pred ----ccCCCC----c----cCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001490 997 ----YLRPTT----S----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus 997 ----~~~~~~----~----~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
.+|... . .-.|.+..+.|+| .++-+|++++.|.+ +|.+
T Consensus 659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEGl~-IYsl 708 (893)
T KOG0291|consen 659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEGLL-IYSL 708 (893)
T ss_pred cccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccceE-EEec
Confidence 111110 0 1136678999999 78999999999853 3444
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-50 Score=424.23 Aligned_cols=590 Identities=17% Similarity=0.215 Sum_probs=455.9
Q ss_pred CccC-CCCCccCCC-CccccccccccCCCccCCCccceeeecc-cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCC
Q 001490 267 GVSL-KNIPDYSPK-SSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG 343 (1068)
Q Consensus 267 ~~~~-~s~~~fsP~-~s~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~ 343 (1068)
+..| ...+.|+|+ .|.+..+-+. ..+.++..+...||. .+...|.+++.||+|. +|.+....|...+-++...
T Consensus 12 GTvyr~Gnl~ft~dG~sviSPvGNr---vsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r 87 (893)
T KOG0291|consen 12 GTVYRAGNLVFTKDGNSVISPVGNR---VSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSR 87 (893)
T ss_pred cceeecCcEEECCCCCEEEeccCCE---EEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccc
Confidence 3344 346777777 3433333222 233444455556666 5667999999999997 6677778899999999888
Q ss_pred cceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCc-----ccceEEEccccc
Q 001490 344 QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVG 418 (1068)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~ 418 (1068)
..++.+++ +.+|.|+.|||||+++|+|. .+.+.||....... .....++.+|..
T Consensus 88 ~Vlh~f~f--------------------k~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fd 146 (893)
T KOG0291|consen 88 SVLHRFNF--------------------KRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFD 146 (893)
T ss_pred eeeEEEee--------------------cCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcc
Confidence 88776543 46899999999999999885 45699998765332 233446778999
Q ss_pred cEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCce--eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCC--
Q 001490 419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-- 494 (1068)
Q Consensus 419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~-- 494 (1068)
.|.++.|+.|.+ ++++|+.|.++++|++...+- .+.+.+|.+.|.++-|.. |...+++.+.||.+.+|..+.
T Consensus 147 di~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P 222 (893)
T KOG0291|consen 147 DITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRP 222 (893)
T ss_pred ceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCC
Confidence 999999999999 899999999999999886655 577899999999888754 556899999999999997761
Q ss_pred ---------------------CCc-----------eEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490 495 ---------------------LGA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 542 (1068)
Q Consensus 495 ---------------------~~~-----------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 542 (1068)
++. ...+......+++.+|++..+.|+++..++ ...+|++....
T Consensus 223 ~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG----~f~LyelP~f~ 298 (893)
T KOG0291|consen 223 PELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG----EFGLYELPDFN 298 (893)
T ss_pred cccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC----eeEEEecCCce
Confidence 111 011222335789999999999999998744 58899999999
Q ss_pred eeeEEeccccccCCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001490 543 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 621 (1068)
Q Consensus 543 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 621 (1068)
+++.+.-.. ..|..++|+..|.+|+.|+ .-|.+.||+..+..-+...++| ...+.+++++|||+++|+|++||.
T Consensus 299 lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 299 LIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred EEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCc
Confidence 999888766 7899999999999999976 5589999999987777666655 567999999999999999999999
Q ss_pred EEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccce
Q 001490 622 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 701 (1068)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 701 (1068)
|+|||...+-++.++..
T Consensus 374 VKvWn~~SgfC~vTFte--------------------------------------------------------------- 390 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVTFTE--------------------------------------------------------------- 390 (893)
T ss_pred EEEEeccCceEEEEecc---------------------------------------------------------------
Confidence 99999998877766654
Q ss_pred eecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCe
Q 001490 702 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 781 (1068)
Q Consensus 702 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 781 (1068)
|...++.+.|+..|+.+++.+-||+|+.||+... .+..++..+ .....
T Consensus 391 -------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~Qf 438 (893)
T KOG0291|consen 391 -------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQF 438 (893)
T ss_pred -------CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---Cceee
Confidence 5566777777888888888888888888876432 223333322 34556
Q ss_pred eEEEEecCCCEEEEEe-C-CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc-eeeeee
Q 001490 782 PCFALSKNDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKL 858 (1068)
Q Consensus 782 ~~l~~s~dg~~l~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~~ 858 (1068)
.|++..|.|..++.|+ | -.|.+|+++||+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-.. ..+.++
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl 517 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETL 517 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeE
Confidence 7999999999999988 4 3499999999999999999999999999999 8999999999999999998654 344555
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee----eeee--------cCCCcccCCCCceEEEEeeCCCE
Q 001490 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----RSLQ--------TPDGVMTLAPSETHIQFHKDQTR 926 (1068)
Q Consensus 859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~--------~~~~~~~~~~~v~~~~~spdg~~ 926 (1068)
+ +...+..++|+|||+.|+++.-||.|.+||.+.+..... +-+. ....+......++.+++|+||.+
T Consensus 518 ~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~ 596 (893)
T KOG0291|consen 518 E-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC 596 (893)
T ss_pred e-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence 5 667799999999999999999999999999987543310 0000 00011111247899999999999
Q ss_pred EEE-EeCCeEEEEECCCceeeeeeccC----------------------------------------------------C
Q 001490 927 FLL-VHETHLAIYEAEELTCLKQWFPI----------------------------------------------------S 953 (1068)
Q Consensus 927 la~-~~d~~i~vwd~~~~~~~~~~~~~----------------------------------------------------h 953 (1068)
|++ |..+.|++|++.++..+..+... +
T Consensus 597 IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr 676 (893)
T KOG0291|consen 597 ILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRR 676 (893)
T ss_pred EEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccc
Confidence 998 67788999999887665442211 0
Q ss_pred ---CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEe
Q 001490 954 ---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 992 (1068)
Q Consensus 954 ---~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 992 (1068)
.-.|.++.|||.|+.++.++..| +.||.+++.-+..-+
T Consensus 677 ~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~FDPf 717 (893)
T KOG0291|consen 677 FRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTILFDPF 717 (893)
T ss_pred cCceEEEEEEEECCCcCeeeeecccc-eEEEecCCceEEccc
Confidence 12478899999999999999887 778888876554333
No 8
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.6e-52 Score=398.53 Aligned_cols=470 Identities=18% Similarity=0.272 Sum_probs=380.8
Q ss_pred CccccccCcccc----HHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcchHHHHHHHHhh-
Q 001490 2 HRLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKD- 76 (1068)
Q Consensus 2 ~~le~esg~~~~----~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~~~L~~~- 76 (1068)
+.|++|.+++|+ +..|-+.|-+|+||.+++.+++|++.+.+. --+|||..||++|.++...|-.+||+-
T Consensus 28 ~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kkL------~dLYEqivlEliELREL~tAR~~lRQTd 101 (508)
T KOG0275|consen 28 QTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKKL------IDLYEQIVLELIELRELGTARSLLRQTD 101 (508)
T ss_pred HHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhHH------HHHHHHHHHHHHHHHhhhHHHHHHhccC
Confidence 468999999996 999999999999999999999997765554 468999999999999999999999954
Q ss_pred -ccccCCCCHHHHHHHHhhhcccCccChhhhhhhcCChHHHHHHHHHHHHhhhccCccccccccCCCcchhHHHHHHHhh
Q 001490 77 -LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQS 155 (1068)
Q Consensus 77 -l~p~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa 155 (1068)
+.-|.+.++++|-+|-.||..+-++..+.+.+ ......|..+.+.|.. ++.. +||.||..||.||
T Consensus 102 pM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d--ssKEkrRa~IAQ~ls~----EV~V--------VppSRLlaLlGQa 167 (508)
T KOG0275|consen 102 PMIMLKQIQPERYIRLENLLNRSYFDPREAYGD--SSKEKRRAVIAQALSG----EVHV--------VPPSRLLALLGQA 167 (508)
T ss_pred ceehhhccChHHHHHHHHHhcccccChhhhcCc--chHHHHHHHHHHHhcC----ceEE--------cChHHHHHHHHHH
Confidence 33345678999999999999888776666543 1223445555555544 4432 8999999999999
Q ss_pred cccchhcccCCCCCCCCCcceeecccCCCCCCccCCCCCCCCCCCCCCCCCCcccccCCcccccccccccccCCCCCCcc
Q 001490 156 LNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKA 235 (1068)
Q Consensus 156 ~~~Q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 235 (1068)
++||+.+.+.|. ... ..||....... ++
T Consensus 168 LKWQqHQGLLPP-Gt~-iDLFRGkAA~K------~~-------------------------------------------- 195 (508)
T KOG0275|consen 168 LKWQQHQGLLPP-GTT-IDLFRGKAAMK------DQ-------------------------------------------- 195 (508)
T ss_pred hhhHhhcCCCCC-Cce-eeeccchhhhh------hh--------------------------------------------
Confidence 999998877664 111 13333322211 00
Q ss_pred ccccCCCCCCCCcCCccccccCCCCceeeecCccCCCCCccCCCCccccccccccCCCccCCCccceeeecc-cCCCCce
Q 001490 236 VTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPM 314 (1068)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~ 314 (1068)
.+ ...|..+.+.++ +.+..+.
T Consensus 196 -------------------------~E---------------------------------e~~Pt~l~r~IKFg~KSh~E 217 (508)
T KOG0275|consen 196 -------------------------EE---------------------------------ERYPTQLARSIKFGQKSHVE 217 (508)
T ss_pred -------------------------Hh---------------------------------hhchHHhhhheecccccchh
Confidence 01 223344444445 5566899
Q ss_pred EEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCc
Q 001490 315 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 394 (1068)
Q Consensus 315 ~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~ 394 (1068)
|..|||||+ +|++|+.||-|.+||..+|+..+...++.-| .+.-+..+|.|+.||.|...||+|+.||
T Consensus 218 cA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 218 CARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred heeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeecccceEEEeecccHHHhhccCcCC
Confidence 999999998 6799999999999999999988754443222 1445789999999999999999999999
Q ss_pred EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCC
Q 001490 395 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 474 (1068)
Q Consensus 395 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 474 (1068)
.|+||.+.+|.+++... ..|+..|+|+.||.|+. .+++++.|.++++.-+.+|++++.++||...|+...|.+ |
T Consensus 286 kIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--d 359 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD--D 359 (508)
T ss_pred cEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccchhHHHhcCccccccceEEcC--C
Confidence 99999999999988432 28999999999999999 699999999999999999999999999999999999855 8
Q ss_pred ccEEEEEEcCCcEEEEeCCCCCceEEecCCC--CcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001490 475 IHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 551 (1068)
Q Consensus 475 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 551 (1068)
|..+++++.||+|++|+..+.++..++...+ .+|.++..-| +...+++|.. .+++++.++ .|+.++.+....
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr----sntv~imn~-qGQvVrsfsSGk 434 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR----SNTVYIMNM-QGQVVRSFSSGK 434 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----CCeEEEEec-cceEEeeeccCC
Confidence 8899999999999999999999988776544 4677877777 4456777765 456999887 577888887665
Q ss_pred cccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001490 552 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 626 (1068)
Q Consensus 552 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 626 (1068)
...+...++..+|.|.++++.++|+.++.|...+|++..++..|.. .+..++-+|..+++|+-+.||.+++|.
T Consensus 435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcccchhhhhcccchhhhcC
Confidence 5567788889999999999999999999999999999999988755 478899999999999999999999994
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-48 Score=413.66 Aligned_cols=580 Identities=15% Similarity=0.189 Sum_probs=444.3
Q ss_pred CceEEEE-cCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE
Q 001490 312 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 390 (1068)
Q Consensus 312 ~V~~v~~-spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~ 390 (1068)
.+..+.. +..|+++ |+ +....|.+||+.+|+...... .......|+|+.-+||.-.||+|
T Consensus 23 N~~~~~~~~~~Gr~v-a~-~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAV-AV-SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcEE-EE-eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence 3333333 3458743 33 333789999999996554311 22234689999999999999999
Q ss_pred eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeee
Q 001490 391 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 470 (1068)
Q Consensus 391 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 470 (1068)
..||.|+||+..++.... ++.+|...|+++.|...|. .|++|+.|+.|.+||+-...-+.++.||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875333 7889999999999999999 89999999999999999888899999999999998885
Q ss_pred ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe--------
Q 001490 471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-------- 542 (1068)
Q Consensus 471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~-------- 542 (1068)
. +..++++.+.|+.|++||+.+..+..+...+...+..+++.+ +.+++++. ++.+.+|++....
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 4 456999999999999999999999999999999999999988 67777765 4459999883110
Q ss_pred ----eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE--------Ee--CC-------------
Q 001490 543 ----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT--------ID--AG------------- 595 (1068)
Q Consensus 543 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--------~~--~~------------- 595 (1068)
...++... ..+....+...++++++++-+.|..+.++.+.+.+.+.. .. ..
T Consensus 231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 11112211 134555666778888899999999999998865321100 00 00
Q ss_pred ---------CCCCCCceEEEecCCC---EEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCe
Q 001490 596 ---------GGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 663 (1068)
Q Consensus 596 ---------~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 663 (1068)
.....+.++.+-|.+. .|+. -.++++..|.++......
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~----------------------------- 358 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTS----------------------------- 358 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCC-----------------------------
Confidence 0011244455555332 2222 444555555544210000
Q ss_pred eeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCc
Q 001490 664 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 743 (1068)
Q Consensus 664 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~ 743 (1068)
..+.. .-.+...+|...|+++++|.+...+++++ ++.+++|+
T Consensus 359 ------------------------------p~~~~--~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn----- 400 (888)
T KOG0306|consen 359 ------------------------------PEADR--TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWN----- 400 (888)
T ss_pred ------------------------------ccccc--cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEE-----
Confidence 00001 11122245999999999999987555554 45677665
Q ss_pred cCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCe
Q 001490 744 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA 822 (1068)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i 822 (1068)
..+.+|+.++. ...+.+..|-|.++++++|. .|.+.+||+.+...+.+++.|.+.|
T Consensus 401 -----------------~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 401 -----------------RDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI 457 (888)
T ss_pred -----------------ccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence 45566666643 34788999999999999998 5999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEEcCC-----ceee--------eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001490 823 TSLAFNPHDNNVIAIGMDDSTILIYNARS-----SEVI--------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889 (1068)
Q Consensus 823 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~-----~~~~--------~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iw 889 (1068)
.+++.+| |++.+++|+.|.+|++||..- |... ++++ -.+.|.|+.+||||++||.+=-|.+|+||
T Consensus 458 Wsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 458 WSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred eeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 9999999 999999999999999999742 2111 1222 35679999999999999999999999999
Q ss_pred ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCE
Q 001490 890 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 968 (1068)
Q Consensus 890 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~ 968 (1068)
-+++ ....-.+.||.- +|.++..|||++++++ +.|.+|+||-++=|.|..+++ +|...|.++.|.|+..+
T Consensus 536 flDt-----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~ 606 (888)
T KOG0306|consen 536 FLDT-----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHL 606 (888)
T ss_pred Eecc-----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEccccee
Confidence 9998 446666778876 8999999999999999 689999999999999998854 79999999999999999
Q ss_pred EEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001490 969 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus 969 l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
+.|+|.|+.|+-||-..-+.+..+.. |-..++ |++.+| +|.++++++.|..|++|+-.+
T Consensus 607 FFt~gKD~kvKqWDg~kFe~iq~L~~--------H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWDGEKFEEIQKLDG--------HHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEecCcceEEeechhhhhhheeecc--------chheee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 99999999999999999998877772 233345 677778 689999999999999999876
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-48 Score=413.31 Aligned_cols=547 Identities=13% Similarity=0.201 Sum_probs=433.7
Q ss_pred CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 389 (1068)
Q Consensus 310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las 389 (1068)
+.+|+|++-+||.- +||+|..||.|+||+..++..+.. +.||...|+++.|...|.+||+
T Consensus 65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence 35899999999985 889999999999999998866544 7799999999999999999999
Q ss_pred EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001490 390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 469 (1068)
Q Consensus 390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 469 (1068)
|+.|+.|.+||+-...... .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..+..+...|.+.++.+++
T Consensus 125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 9999999999997754333 6889999999999998777 8999999999999999999999999999999999999
Q ss_pred eecCCccEEEEEEcCCcEEEEeCCCCCce-------------EEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001490 470 HAKENIHFIFSISVDGKIKAWLYDSLGAR-------------VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 536 (1068)
Q Consensus 470 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 536 (1068)
.+ ..+++++.|+.+++|++...... .......+....++..++++++++-+. +..+.++
T Consensus 200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~----d~~~e~f 271 (888)
T KOG0306|consen 200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGA----DKVIELF 271 (888)
T ss_pred ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecc----hhhhhhe
Confidence 65 58999999999999998321110 011122223455667778888877665 4456677
Q ss_pred eCCCCeeeeE--------------------------------EeccccccCCeEEEEEecCCCEE--EEEECCCeEEEEE
Q 001490 537 NESEGAIKRT--------------------------------YQGLQLQHNSVSVVHFDTAKDQI--LAAGDDHVIKIWD 582 (1068)
Q Consensus 537 d~~~~~~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~l--~~~s~dg~i~iwd 582 (1068)
.+.+.+.+.. +... .....+.++.+.|.++.. +..-.++++..|.
T Consensus 272 rI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i-r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ys 350 (888)
T KOG0306|consen 272 RIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI-RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYS 350 (888)
T ss_pred eecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe-echhheeEEEEEecCCcceeEEEeecCceEEEE
Confidence 6654321100 0000 012457778887765322 2235678888887
Q ss_pred cCC-Ce------EEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccc
Q 001490 583 MNK-VQ------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 655 (1068)
Q Consensus 583 ~~~-~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 655 (1068)
++. +. .+..+...++...|.++++|.+...+++|+. +.+++|+..+.+++.++... .+.+..|
T Consensus 351 l~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~F------- 420 (888)
T KOG0306|consen 351 LENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKF------- 420 (888)
T ss_pred eccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEe-------
Confidence 765 21 2344555566778999999999887777765 78999999999999888743 4444444
Q ss_pred ccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEE
Q 001490 656 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 735 (1068)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 735 (1068)
-|.+++++.|...|.+.++|+......... ..|.+.|.+++.+||++.+++++.|.+|+
T Consensus 421 ---------------vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti------~AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 421 ---------------VPGDRYIVLGTKNGELQVFDLASASLVETI------RAHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred ---------------cCCCceEEEeccCCceEEEEeehhhhhhhh------hccccceeeeeecCCCCceEEecCCcEEE
Confidence 377899999999999999998744332222 24999999999999999999999999999
Q ss_pred EEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEE
Q 001490 736 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 814 (1068)
Q Consensus 736 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 814 (1068)
+|++..... ..|... ++..... ..+. .-...|.|+.+||||++||++- |++++||-+.+.+....
T Consensus 480 fWdf~l~~~-~~gt~~-----k~lsl~~---~rtL-----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls 545 (888)
T KOG0306|consen 480 FWDFKLVVS-VPGTQK-----KVLSLKH---TRTL-----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS 545 (888)
T ss_pred EEeEEEEec-cCcccc-----eeeeecc---ceEE-----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee
Confidence 999854322 111100 0000000 1111 1467899999999999999997 99999999999999999
Q ss_pred ecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001490 815 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 894 (1068)
Q Consensus 815 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 894 (1068)
+.+|.-+|.|+.+|| |+++++||+.|+.|+||-+.-|.|.+.+-+|.+.|.++.|.|+...+.++|.|+.|+-||-+.
T Consensus 546 LYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k- 623 (888)
T KOG0306|consen 546 LYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK- 623 (888)
T ss_pred ecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCce
Q 001490 895 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 944 (1068)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~ 944 (1068)
...++.+.+|.. .|.+++.+|+|.++++ +.|..|++|......
T Consensus 624 ----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 624 ----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ----hhhheeeccchh---eeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 447788888887 8999999999999999 688999999976543
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-50 Score=395.47 Aligned_cols=333 Identities=20% Similarity=0.324 Sum_probs=304.1
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
..|...+.||.+.|.|++|||+|+ .||+|+.|.++++||+.+..+..+ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 578888999999999999999998 579999999999999999888765 789999999999
Q ss_pred ECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC-----CCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490 380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 454 (1068)
Q Consensus 380 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~ 454 (1068)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||.|+|||+..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987654 6789999999999965 456 7999999999999999999999
Q ss_pred eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEc-----------cCCC-----
Q 001490 455 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR----- 518 (1068)
Q Consensus 455 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-----------~d~~----- 518 (1068)
..+.+|..+|++++|-. + .++++++.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 99999999999999843 2 399999999999999999988999999999999999887 2233
Q ss_pred --------------------EEEEEeeCCCCceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCe
Q 001490 519 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 577 (1068)
Q Consensus 519 --------------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 577 (1068)
.|++++. +.++.+|+... .+++..+.+|+ ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 4888875 66799999764 45788888998 99999999999999999999999
Q ss_pred EEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccccc
Q 001490 578 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 657 (1068)
Q Consensus 578 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 657 (1068)
|++||..+|+.+..+.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999866 5679999999999999999999999999999999999999999999999995
Q ss_pred ccccCeeeecCCCCCCcccceeecccccceeec
Q 001490 658 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 690 (1068)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd 690 (1068)
|||..+++++.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 7899999999999999995
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-50 Score=392.65 Aligned_cols=367 Identities=20% Similarity=0.291 Sum_probs=297.1
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77999999999999999999999999999999999976554 7889999999999999999 899999999999999
Q ss_pred CCCCcee-eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490 448 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 448 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 526 (1068)
..+|+++ ..+.+|...|++++|.|- ...|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 678999999999999762 23366778888765
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490 527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 606 (1068)
Q Consensus 527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 606 (1068)
|+.++|||+..+.++..+.+|. ..|+|+.|..+| +|++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5569999999999999999999 999999998765 899999999999999999999999998876 4888888
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccc
Q 001490 607 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 686 (1068)
Q Consensus 607 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 686 (1068)
+.|- .|-+|..|.+ +......... ...+.....
T Consensus 297 sTdy-~LRtgaf~~t--------~~~~~~~se~----~~~Al~rY~---------------------------------- 329 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHT--------GRKPKSFSEE----QKKALERYE---------------------------------- 329 (480)
T ss_pred cchh-hhhccccccc--------cccCCChHHH----HHHHHHHHH----------------------------------
Confidence 7652 2222322211 1110000000 000000000
Q ss_pred eeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCc
Q 001490 687 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 766 (1068)
Q Consensus 687 ~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1068)
...-..++++++++.|.++.+|+-.... ++
T Consensus 330 -----------------------------~~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp 359 (480)
T KOG0271|consen 330 -----------------------------AVLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP 359 (480)
T ss_pred -----------------------------HhhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence 0001123456667777777766522111 00
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEE
Q 001490 767 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 845 (1068)
Q Consensus 767 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 845 (1068)
+.. .+ +|..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-+.|..++||. |.++|++|+.|.+++
T Consensus 360 i~r--mt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 ITR--MT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred hhh--hh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 111 11 4899999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490 846 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 846 iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd 890 (1068)
+|++.+.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999995
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-42 Score=365.13 Aligned_cols=622 Identities=14% Similarity=0.171 Sum_probs=416.4
Q ss_pred ceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe-
Q 001490 313 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 391 (1068)
Q Consensus 313 V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~- 391 (1068)
-..++.+|-.. ++|.-. ...|.+||+....+-+. +..|..+++|++||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aYpA-GCvVVlfn~~~~tQ~hl-------------------vnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAYPA-GCVVVLFNVDSCTQSHL-------------------VNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceeecc-CcEEEEEcccccchhhe-------------------ecccCcceeEEEEcCCCcEEEeccc
Confidence 34566677665 334321 26799999987655432 556888999999999999999983
Q ss_pred -CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC--CCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001490 392 -SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLC 468 (1068)
Q Consensus 392 -~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 468 (1068)
....++||++..-..+. ++..|...|+|++|+|.++ ++++.|. |-.|.+||++.......- .-...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEE
Confidence 56679999999876555 6779999999999999999 6776664 446778987655433222 2345677788
Q ss_pred eeecCCccEEEEEEcCCcEEEEeCCCCCceEE---ecCCCCc--------EEEEEE----ccCCCEEEEEeeCCCCceeE
Q 001490 469 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAPGLG--------CTRMAY----SANGRRLFSCGTSKEGESFL 533 (1068)
Q Consensus 469 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~--------i~~~~~----s~d~~~l~~~~~~~~~~~~i 533 (1068)
| ++||.++++.+ ...|++|.++....... +.+...- ...++. ..+..+.++. .|.+
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhL 243 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHL 243 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccce
Confidence 7 45888888876 46799998876652211 1111100 000100 0011111111 1112
Q ss_pred EEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC------------------
Q 001490 534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG------------------ 595 (1068)
Q Consensus 534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------------------ 595 (1068)
.-+ .+.+++.+...-. .....|++.+ .++|++|+.+|.|++|+..+-.-+.+++..
T Consensus 244 vEF--SsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s 317 (1080)
T KOG1408|consen 244 VEF--SSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS 317 (1080)
T ss_pred eee--chhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence 211 1222222211111 1334555554 579999999999999998875544443211
Q ss_pred ----CCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCcee---eeccccccceeeeEEcCCccccccccccCeeeecC
Q 001490 596 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 668 (1068)
Q Consensus 596 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1068)
...+...++.|++....|.+...|..++|||+++...+ ..+-.|...|+.+..-|..-... ....
T Consensus 318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac--- 389 (1080)
T KOG1408|consen 318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC--- 389 (1080)
T ss_pred ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc---
Confidence 11233456789999999999999999999999876443 33445777777666554211100 0000
Q ss_pred CCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCc
Q 001490 669 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 748 (1068)
Q Consensus 669 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 748 (1068)
.|.+ -+++++.|++||+|+++............ -......+.+..+...++ -|
T Consensus 390 --lp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNi----ls~~l~ki~y~d~~~q~~----------~d---------- 442 (1080)
T KOG1408|consen 390 --LPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNI----LSANLSKIPYEDSTQQIM----------HD---------- 442 (1080)
T ss_pred --CCcc-ceeEecCCCcEEEeecccccccceeeccc----chhhhhcCccccCchhhh----------hh----------
Confidence 1222 37899999999999988633322211100 000111111111111000 00
Q ss_pred cceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEE
Q 001490 749 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 827 (1068)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 827 (1068)
....++|-.... .......++++++||||++||+|+ .|.++||++...+....+..|..+|.|+.|
T Consensus 443 -----~~~~~fdka~~s--------~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey 509 (1080)
T KOG1408|consen 443 -----ASAGIFDKALVS--------TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY 509 (1080)
T ss_pred -----ccCCcccccchh--------hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence 001111111100 012566889999999999999998 599999999999999999999999999999
Q ss_pred eCC--CCCEEEEEECCCeEEEEEcCC-ceeeeeecccccCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeeeee
Q 001490 828 NPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSL 902 (1068)
Q Consensus 828 s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 902 (1068)
|-. ..++||+++.|.-|.|||+.. ..++.++.+|+..|+++.|.-.| ..+++++.|+.|.+ +..... .....+
T Consensus 510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~-~~g~~f 587 (1080)
T KOG1408|consen 510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKA-SSGRLF 587 (1080)
T ss_pred cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccc-cCceec
Confidence 852 367999999999999999975 46788999999999999998887 78999999997654 333210 001111
Q ss_pred ecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccC--CCcCEEEEEEecCCCEEEEEECCCcEE
Q 001490 903 QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 979 (1068)
Q Consensus 903 ~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~ 979 (1068)
....+......+..++..|..+++++ +.|..|+|||+++|+....+... |.+..-.+...|.|-||++...|+++.
T Consensus 588 -~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 588 -PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred -cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 11111111135889999999999999 79999999999999999886654 457777899999999999999999999
Q ss_pred EEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001490 980 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus 980 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
++|+.+|+++++...+. -.++.+.|.+ |.+.|++.+.||+|++|.++-
T Consensus 667 ~~Df~sgEcvA~m~GHs----------E~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTGHS----------EAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhhhhhcCcc----------hheeeeeecc-cchhheeecCCceEEEEECch
Confidence 99999999999988433 3455699999 799999999999999999874
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.5e-40 Score=348.02 Aligned_cols=508 Identities=15% Similarity=0.193 Sum_probs=377.3
Q ss_pred ecccCCCCceEEEEcCCCCeEEEEEcC--cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490 305 TLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 382 (1068)
Q Consensus 305 ~l~~h~~~V~~v~~spdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp 382 (1068)
.+..|..+++|+||||+|+ ++|+|-. ...+++|++..-..+.+ +..|+..|+|++|+|
T Consensus 73 lvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp 132 (1080)
T KOG1408|consen 73 LVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSP 132 (1080)
T ss_pred eecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecC
Confidence 3456777999999999998 6798874 45699999998776665 667999999999999
Q ss_pred CCCEEEEEeCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee-----
Q 001490 383 DGSLLGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY----- 455 (1068)
Q Consensus 383 dg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----- 455 (1068)
.++|+++.+... .|.+||+..+.... -..-...|..++|+.||. +++|.+ ...|++|.++.++...
T Consensus 133 ~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl 205 (1080)
T KOG1408|consen 133 GNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPL 205 (1080)
T ss_pred CCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccc
Confidence 999999887654 67789887543222 123456799999999999 788887 6789999987665110
Q ss_pred --------Ee------------------------ccC-----------------CCcEEEEeeeecCCccEEEEEEcCCc
Q 001490 456 --------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDGK 486 (1068)
Q Consensus 456 --------~~------------------------~~h-----------------~~~v~~i~~~~~~~~~~l~s~s~dg~ 486 (1068)
.+ .|| ...-.+|++ +.++|+.|+.+|.
T Consensus 206 ~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~ 281 (1080)
T KOG1408|consen 206 PGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGM 281 (1080)
T ss_pred cchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccce
Confidence 00 000 011123333 3469999999999
Q ss_pred EEEEeCCCCCceEEecCC------------------------CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490 487 IKAWLYDSLGARVDYDAP------------------------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 542 (1068)
Q Consensus 487 i~vwd~~~~~~~~~~~~~------------------------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 542 (1068)
|++++..+.....++... -...-.+.|++....|.+... +..+++||++.-+
T Consensus 282 vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~~ 357 (1080)
T KOG1408|consen 282 VRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDVN 357 (1080)
T ss_pred eeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEeccccc
Confidence 999987654432221110 002346778888888888775 6679999998765
Q ss_pred eeeEEeccccccCCeEEEEEecC-----------CCEEEEEECCCeEEEEEcCCCeEEEEE-------------eC----
Q 001490 543 IKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------DA---- 594 (1068)
Q Consensus 543 ~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------~~---- 594 (1068)
.+.+....-.|...|+.+.--|. ...+++++.|++|++||+..+..-..+ ..
T Consensus 358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~ 437 (1080)
T KOG1408|consen 358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ 437 (1080)
T ss_pred cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence 44332222222255666554441 235889999999999999753211100 00
Q ss_pred ------------------CCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccc
Q 001490 595 ------------------GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 656 (1068)
Q Consensus 595 ------------------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 656 (1068)
-....++.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.++...
T Consensus 438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~---- 513 (1080)
T KOG1408|consen 438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV---- 513 (1080)
T ss_pred hhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch----
Confidence 0122357899999999999999999999999999999999999999999999997321
Q ss_pred cccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCC--ceEEEeecCccE
Q 001490 657 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGVH 734 (1068)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~i 734 (1068)
-..++|++++.|.-|.++|... .+.+.....+|...|+++.|...| ..+++++.|..+
T Consensus 514 ---------------~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi 573 (1080)
T KOG1408|consen 514 ---------------LTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI 573 (1080)
T ss_pred ---------------hhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence 2358899999999999999752 223333335689999999999888 778999988766
Q ss_pred EEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEE
Q 001490 735 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL 813 (1068)
Q Consensus 735 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~ 813 (1068)
.. +.... ..+|.......-+ -....+..+++.|..++++++. |..|+||++++++..+
T Consensus 574 mF-r~~qk------------------~~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 574 MF-RVNQK------------------ASSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred he-ehhcc------------------ccCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 43 21110 0111111111000 1345678999999999999998 8999999999999999
Q ss_pred EecC---CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490 814 TIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 814 ~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd 890 (1068)
.|++ |.+....+...| .|-+||+...|+++.++|+.+|+++.++.||...|+.+.|++|-+.|++++.||.|.||.
T Consensus 633 ~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 9986 556788899999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 001490 891 VDG 893 (1068)
Q Consensus 891 ~~~ 893 (1068)
+..
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 864
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.2e-42 Score=340.75 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=266.7
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC--C
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G 384 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd--g 384 (1068)
-|.+.+|..+.||+|++ ++|||+.+|.++||+..++..+.. +.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 36677999999999998 789999999999999999977765 8899999999999997 6
Q ss_pred CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490 385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464 (1068)
Q Consensus 385 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 464 (1068)
..+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876665 6889999999999999999 89999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001490 465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 544 (1068)
Q Consensus 465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 544 (1068)
.+++|++ ||.++++|+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..|++|+. |++++|||++....+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999977 8889999999999999999999999999999999999999999999999986 778999999999999
Q ss_pred eEEeccccccCCeEEEEEec-CCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001490 545 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 623 (1068)
Q Consensus 545 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 623 (1068)
.++..|. +.|..|.|+| .|.+|++++.|++++||...+..+++.+.+|.. .|.++.+++|+..+++++.|++++
T Consensus 381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence 9999998 9999999998 688999999999999999999999999998755 599999999999999999999999
Q ss_pred EEE
Q 001490 624 ILE 626 (1068)
Q Consensus 624 iwd 626 (1068)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
No 16
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-38 Score=335.43 Aligned_cols=644 Identities=15% Similarity=0.168 Sum_probs=433.9
Q ss_pred EEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC---EEEEEe
Q 001490 315 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAY 391 (1068)
Q Consensus 315 ~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~---~las~~ 391 (1068)
...|.|.+ ++|.|.. ..|.+||..+..... .+.||.++|+|+.|-|+.+ ++++|+
T Consensus 19 v~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~ 76 (764)
T KOG1063|consen 19 VSSWGPGG--LVAFGAG-PAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD 76 (764)
T ss_pred cccccccc--eEEecCC-ceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence 34557766 4577655 789999987653332 2889999999999999988 899999
Q ss_pred CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc--eeeEeccCCCcEE--EE
Q 001490 392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVY--SL 467 (1068)
Q Consensus 392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~--~i 467 (1068)
.|+.|++|.++. +.......+.+|...+.|+ ..... ...+...|+++.+||.+..+ +...+.-..+.+. ++
T Consensus 77 sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 77 SDGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 999999999984 3344555777766655554 43322 22223689999999985554 2223322223333 33
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCC--CceEEecCCCCcEEEEEEccCCC---EEEEEeeCCCCceeEEEEeCCCCe
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA 542 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~---~l~~~~~~~~~~~~i~~wd~~~~~ 542 (1068)
++.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. |..|++|.+.-+.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~ 227 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGD 227 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecC
Confidence 4445334445566777888888865533 34567889999999999987554 5555554 7789999765332
Q ss_pred ---------------------eeeE----------EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC--eEE
Q 001490 543 ---------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLL 589 (1068)
Q Consensus 543 ---------------------~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~ 589 (1068)
.... +.||. +.|+++.|+|.+..|++++.|.++.+|...+. -.+
T Consensus 228 ~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv 304 (764)
T KOG1063|consen 228 DEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV 304 (764)
T ss_pred CccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEE
Confidence 1111 23666 99999999999999999999999999987654 333
Q ss_pred EEEeC---CCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC---ceeeeccccccceeeeEEcCCccccccccccCe
Q 001490 590 TTIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 663 (1068)
Q Consensus 590 ~~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 663 (1068)
..... .+...+.....|+|++..+++-+..|..++|...+. .....+.+|.+.|..+++.
T Consensus 305 ~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~-------------- 370 (764)
T KOG1063|consen 305 DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD-------------- 370 (764)
T ss_pred EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec--------------
Confidence 33321 122334678999999999999999999999994443 3344567899999999996
Q ss_pred eeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCc
Q 001490 664 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 743 (1068)
Q Consensus 664 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~ 743 (1068)
|.|.++++.+.|.+-|+|-....+ ..-..+.. .+.|...+.++++-+..-.+++++....+|+|+.+..-
T Consensus 371 --------psGeflLsvs~DQTTRlFa~wg~q-~~wHEiaR-PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 371 --------PSGEFLLSVSLDQTTRLFARWGRQ-QEWHEIAR-PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred --------CCCCEEEEeccccceeeecccccc-cceeeecc-cccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence 678899999999999998755211 11222222 24699999999999976678999999999999876432
Q ss_pred cCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCCe-------------EEEEEcc--
Q 001490 744 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGV-------------ISLYIVM-- 807 (1068)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~~~~dg~-------------i~iwd~~-- 807 (1068)
... .....|.+....+. ......|..+-.|...-+. .+-+.+. ..+....
T Consensus 441 v~~------------l~~i~g~~~~~~~~--~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 441 VKS------------LMAICGKCFKGSDE--LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred HHH------------HHHHhCccccCchh--cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 100 00000100000000 0022233333333222111 0000000 0011111
Q ss_pred -------CceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC-----eEEEEEcCCceeeeeecccccCeEEEEEcCCCC
Q 001490 808 -------TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALN 875 (1068)
Q Consensus 808 -------~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 875 (1068)
....+..+.+|...|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.|+|||||+
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~ 585 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR 585 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc
Confidence 0122345778999999999999 999999987653 789999999888889999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCc--eeeee-ecc
Q 001490 876 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFP 951 (1068)
Q Consensus 876 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~--~~~~~-~~~ 951 (1068)
+|+++|.|+++.+|........... +...+.|.. -|..+.|+||+.++|+ +.|.+|+||..... +.+.. -..
T Consensus 586 ~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~ 661 (764)
T KOG1063|consen 586 YLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL 661 (764)
T ss_pred EEEEeecCceEEeeeeecccchhhh-hccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh
Confidence 9999999999999998664433222 233444544 5899999999999998 78999999999887 55443 234
Q ss_pred CCCcCEEEEEEec-----CCCEEEEEECCCcEEEEEcCCCc----EEEEeccccccCCCCccCcccceEEEECCC-----
Q 001490 952 ISSVPISQATFSC-----DCRMVFTSFVDGTLSIHEASNLE----VQCRILSTAYLRPTTSCLHVYPHAIAAHPL----- 1017 (1068)
Q Consensus 952 ~h~~~v~~l~fs~-----dg~~l~t~~~dg~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----- 1017 (1068)
.+...|+++++.| .+..+++|-..|.|.+|....-. ..........-+...+...+ ..+.|.|.
T Consensus 662 ~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV--~rl~w~p~~~~~~ 739 (764)
T KOG1063|consen 662 KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAV--NRLLWRPTCSDDW 739 (764)
T ss_pred ccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhh--heeEecccccccc
Confidence 5689999999987 23377888899999999966211 11111100111111112223 34667662
Q ss_pred ----CCCEEEEEeCCCcEEEEeCC
Q 001490 1018 ----KPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 1018 ----~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
....|++|++|..++++++.
T Consensus 740 ~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 740 VEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccceeEEeeecccceeEEeecc
Confidence 23457999999999999975
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=333.06 Aligned_cols=580 Identities=16% Similarity=0.162 Sum_probs=433.1
Q ss_pred EEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcE
Q 001490 316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 395 (1068)
Q Consensus 316 v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~ 395 (1068)
..+..-|..++++.+.+.+..+||++.-..+.. -..+...|+|++=..+ +..+++. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecC-cE
Confidence 555555667888888999999999988776653 2246678998886544 4444433 34
Q ss_pred EEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-ce----eeEeccCCCcEEEEeee
Q 001490 396 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SR----TYSFEGHGAPVYSLCPH 470 (1068)
Q Consensus 396 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~----~~~~~~h~~~v~~i~~~ 470 (1068)
|.+|.- |+.++. .+.+|...|.-+. +-|. .++++..++.+.||+..++ .. +..++...+.|+++. +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666654 332332 4557777777664 3466 6888999999999998874 21 112233333377664 4
Q ss_pred ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001490 471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 550 (1068)
Q Consensus 471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 550 (1068)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|--..++.|.. +|.|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 4433347899999999999999999999999999999999999998889999876 667999999999999999987
Q ss_pred ccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeEEEEEe-CCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490 551 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 628 (1068)
Q Consensus 551 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 628 (1068)
. +.|++++|..||+.+++ |+..|.+.+||++..+.+..+. .| ...+....|-|....+++++.|+.+++|-.+
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEee
Confidence 6 89999999999987766 6677999999999988887776 33 3458889999999999999999999888666
Q ss_pred CC----ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeec
Q 001490 629 ES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 704 (1068)
Q Consensus 629 ~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 704 (1068)
++ +.++.-.||..+..++.|. ...|..+.+++.|++.+.+.+......+....
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy---------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-- 375 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFY---------------------GSQGHFILSAKQDRTLRSFSVISESQSQELGQ-- 375 (910)
T ss_pred CCCCcchheeeccCCCCCchheeee---------------------ccCcEEEEecccCcchhhhhhhHHHHhHhhcc--
Confidence 43 5667777899988888886 46788899999999998887542211111100
Q ss_pred CCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEE
Q 001490 705 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 784 (1068)
Q Consensus 705 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 784 (1068)
......++ .+. +... .. + .-.+|..+
T Consensus 376 -----------~~~~~~~k---------k~~----------------------~~~~------~~--~----k~p~i~~f 401 (910)
T KOG1539|consen 376 -----------LHNKKRAK---------KVN----------------------VFST------EK--L----KLPPIVEF 401 (910)
T ss_pred -----------cccccccc---------ccc----------------------ccch------hh--h----cCCcceee
Confidence 00000000 000 0000 00 0 11233344
Q ss_pred EEecCC----CEEEEEe--CCeEEEEEccCcee-EEEec-----CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc
Q 001490 785 ALSKND----AYLFSAS--GGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 852 (1068)
Q Consensus 785 ~~s~dg----~~l~~~~--dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 852 (1068)
++.-.. .-++++. +...+.|+...... ...+. .....+++++.++ .|++.+.|+..|.|.+|++++|
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence 433211 1223332 46688999876544 22222 2346889999999 9999999999999999999999
Q ss_pred eeeeee---cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE
Q 001490 853 EVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 929 (1068)
Q Consensus 853 ~~~~~~---~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 929 (1068)
-....+ ..|.++|++++...-++.+++++.+|.+++||++..... ....- ...+.++..+.....+|+
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~-----~~l~l----~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK-----KSLRL----GSSITGIVYHRVSDLLAI 551 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee-----eeecc----CCCcceeeeeehhhhhhh
Confidence 988888 589999999999888899999999999999999985422 22211 125788888888888888
Q ss_pred -EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCccc
Q 001490 930 -VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1008 (1068)
Q Consensus 930 -~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1068)
..|-.|.++|+.+.+.++. +.||+..|+.++|||||++|++++.|++|++||+.++.++..+.. ...
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-----------d~~ 619 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-----------DSP 619 (910)
T ss_pred hcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-----------CCc
Confidence 5677899999999998887 678999999999999999999999999999999999999977761 234
Q ss_pred ceEEEECCCCCCEEEEEeCC-CcEEEEe
Q 001490 1009 PHAIAAHPLKPTQFAVGLTN-GEVYVIE 1035 (1068)
Q Consensus 1009 ~~~~~~~p~~~~~l~~~~~d-g~i~~w~ 1035 (1068)
+..++|+| ++++|||+..| ..|++|-
T Consensus 620 ~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 620 CTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 57899999 79999999999 6799996
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-39 Score=306.28 Aligned_cols=299 Identities=19% Similarity=0.276 Sum_probs=255.8
Q ss_pred ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
.+.-+|++|++.|+.++..+.+..++.+++.|.++.+|++.......- .....+.||+..|..++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~ 71 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVL 71 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEE
Confidence 355689999999999999999888999999999999999976422210 111228899999999999
Q ss_pred CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 460 (1068)
Q Consensus 381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 460 (1068)
++||++.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|++ .+++|+.|++|++||+.. .+..++..+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~ 145 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHED 145 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecC
Confidence 9999999999999999999999996554 6889999999999999999 799999999999999654 455555443
Q ss_pred --CCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490 461 --GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 461 --~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
.+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+. ++.+.+||+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL 221 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDL 221 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEc
Confidence 78999999999988899999999999999999999999999999999999999999999999875 667999999
Q ss_pred CCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCC-------CCCCceEEEecCCC
Q 001490 539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGT 611 (1068)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~ 611 (1068)
+.++.+..+... ..|.+++|+|+... +++..+..|+|||++++..+..+..... .+...+++|++||.
T Consensus 222 ~~~k~lysl~a~----~~v~sl~fspnryw-L~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 222 NEGKNLYSLEAF----DIVNSLCFSPNRYW-LCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred cCCceeEeccCC----CeEeeEEecCCcee-EeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence 999998777654 58999999998654 4444556699999999998877754322 23356789999999
Q ss_pred EEEEEECCCeEEEEECC
Q 001490 612 LLAVIANENRIKILETP 628 (1068)
Q Consensus 612 ~l~~~~~dg~i~iwd~~ 628 (1068)
.|++|..|+.|++|.+.
T Consensus 297 tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeeecCCcEEEEEee
Confidence 99999999999999864
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.4e-41 Score=332.34 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.5
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC
Q 001490 370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 449 (1068)
Q Consensus 370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 449 (1068)
|.+.+|..+.||+|++.||+|+.+|.++||+..+...+. ++.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456799999999999999999999999999999875444 78999999999999998422279999999999999999
Q ss_pred CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC
Q 001490 450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 529 (1068)
Q Consensus 450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 529 (1068)
+...+..+.+|...|..++|+| +|++|++++.|.+-++||+.+........+|...|.+++|.+||.++++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999988 7789999999999999999999999999999999999999999999999986
Q ss_pred ceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec-
Q 001490 530 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 608 (1068)
Q Consensus 530 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 608 (1068)
|..-++||+++|+++..+.+|. .+|.+|.|+|+|..+++||.|++++|||++..+.+.+++.|.. -|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6678999999999999999998 9999999999999999999999999999999999999988755 589999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490 609 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 688 (1068)
Q Consensus 609 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~ 688 (1068)
.|.+|++++.|++++||...+..++..+.||.+.|.++.++ +|+..+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999996 78999999999999999
Q ss_pred ec
Q 001490 689 EK 690 (1068)
Q Consensus 689 wd 690 (1068)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
No 20
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.5e-38 Score=331.86 Aligned_cols=624 Identities=13% Similarity=0.111 Sum_probs=414.7
Q ss_pred ceeeecccCCCCceEEEEcCCCC--eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEE
Q 001490 301 TVAQTLIEGSSSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 378 (1068)
Q Consensus 301 ~~~~~l~~h~~~V~~v~~spdg~--~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~ 378 (1068)
....+|.||..+|+|+.|-|+.+ ..+++|+.|+.|++|.++......... +.+|...+ +
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~--~ 105 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKEC--V 105 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeE--E
Confidence 45678899999999999999876 146899999999999998444333222 44555444 4
Q ss_pred EECCCCCEEEEEeCCcEEEEEEccCCCccc-ceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC--ceee
Q 001490 379 VWSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTY 455 (1068)
Q Consensus 379 ~~spdg~~las~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~ 455 (1068)
+++.......+...|+++.+||.+..+... ....+.....-..|+++.++.+..+++.|+.+..|.++.-.++ +.+.
T Consensus 106 cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 106 CVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred EEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 444333333333689999999995544110 1111211222345777788666667888888888888875544 4567
Q ss_pred EeccCCCcEEEEeeeecCC-ccEEEEEEcCCcEEEEeCCCCC------------------------c-e------EEecC
Q 001490 456 SFEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG------------------------A-R------VDYDA 503 (1068)
Q Consensus 456 ~~~~h~~~v~~i~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~------------------------~-~------~~~~~ 503 (1068)
.+.||.+.|.+++|..... .-+|+++|.|..||+|.+.... . . ..+.+
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 8899999999999986544 5688999999999999764322 0 0 01347
Q ss_pred CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEeccc--cccCCeEEEEEecCCCEEEEEECCCeEE
Q 001490 504 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIK 579 (1068)
Q Consensus 504 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 579 (1068)
|...|.++.|+|.+..|++++. |.++.+|...+. --+...+-.. ..........|+|+++.+++-+..|..+
T Consensus 266 HeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 266 HEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred cccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 8889999999999988888886 567999987654 3333332111 1125588999999999999999999999
Q ss_pred EEEcCC-CeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC----ceeeeccccccceeeeEEcCCccc
Q 001490 580 IWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTV 654 (1068)
Q Consensus 580 iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~ 654 (1068)
+|.... ..........++...|..++|+|.|.+|++.+.|.+-|++-.-.. ..+...+.|...++|+++-
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v----- 416 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV----- 416 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc-----
Confidence 998332 333444444566788999999999999999999999999865411 2233344566667777664
Q ss_pred cccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeec---C---CccccccEEEEEEecCCceEEEe
Q 001490 655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL---P---SKVKANKISRLTYNNGGQAIFAL 728 (1068)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---~---~~~~~~~i~~l~~s~~g~~l~~~ 728 (1068)
+....+++|..+.-+|+|+....-...+..+.- . .......|..+-.|.+.-..= -
T Consensus 417 -----------------n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e 478 (764)
T KOG1063|consen 417 -----------------NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-E 478 (764)
T ss_pred -----------------cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-c
Confidence 224456777777888998864221111110000 0 000122233333333221100 0
Q ss_pred ecCccE-EEEeccCCccCCCccceeccCCcccCCCCCCceeeec-----CCCCCCCCCeeEEEEecCCCEEEEEeC----
Q 001490 729 ASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND-----TTDSNSQEAVPCFALSKNDAYLFSASG---- 798 (1068)
Q Consensus 729 ~~dg~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~l~~s~dg~~l~~~~d---- 798 (1068)
..+|.. ..|.- .........+..|....++.... -...+|..+|.+++.+|+|+++|++..
T Consensus 479 ~~~G~~~~~~~e---------t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ 549 (764)
T KOG1063|consen 479 TNTGGEAAVCAE---------TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK 549 (764)
T ss_pred cccccccceeee---------cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc
Confidence 011110 01100 00001111222222222121111 123479999999999999999999961
Q ss_pred --CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce----eeeeecccccCeEEEEEcC
Q 001490 799 --GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSD 872 (1068)
Q Consensus 799 --g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~~~~h~~~V~~l~~sp 872 (1068)
..|++|+..+...+..+.+|+-.|+.++||| |+++|++.+.|+++.+|...... .....+.|+.-|++..|+|
T Consensus 550 ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p 628 (764)
T KOG1063|consen 550 EHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP 628 (764)
T ss_pred cceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc
Confidence 3499999999999999999999999999999 99999999999999999886532 1234678999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC----C-EEEEE-eCCeEEEEECC-----
Q 001490 873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----T-RFLLV-HETHLAIYEAE----- 941 (1068)
Q Consensus 873 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg----~-~la~~-~d~~i~vwd~~----- 941 (1068)
|++++||+|+|++|++|......... +... ........|+.+++.|-- . .+++| ..|.|.+|...
T Consensus 629 de~~FaTaSRDK~VkVW~~~~~~d~~---i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~ 704 (764)
T KOG1063|consen 629 DEKYFATASRDKKVKVWEEPDLRDKY---ISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQ 704 (764)
T ss_pred ccceeEEecCCceEEEEeccCchhhh---hhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccc
Confidence 99999999999999999998753111 1110 111122478888887632 2 45556 66899999955
Q ss_pred --Cceee----eeeccCCCcCEEEEEEecC----------CCEEEEEECCCcEEEEEcC
Q 001490 942 --ELTCL----KQWFPISSVPISQATFSCD----------CRMVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 942 --~~~~~----~~~~~~h~~~v~~l~fs~d----------g~~l~t~~~dg~v~vwd~~ 984 (1068)
.+... ..-..+|...|..+.|+|- ...|++|+.|.+++++++.
T Consensus 705 ~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 705 VTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 11110 0112356889999999973 2457999999999999875
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=302.28 Aligned_cols=295 Identities=17% Similarity=0.252 Sum_probs=268.8
Q ss_pred ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
...++|+||...|.++.|++|.+ .++++|.||.+.|||.-|...++. ++-....|..+||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence 44589999999999999999998 569999999999999998887765 3336689999999
Q ss_pred CCCCCEEEEEeCCcEEEEEEccCCC---cccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 457 (1068)
Q Consensus 381 spdg~~las~~~d~~i~vwd~~~~~---~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 457 (1068)
+|.|+++|.|+-|+...||++.+.. ..+....+.+|++.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence 9999999999999999999998652 2344557899999999999999876 999999999999999999999999
Q ss_pred ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490 458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 537 (1068)
Q Consensus 458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 537 (1068)
.+|.+.|.++.+.|. +++.+++|+-|+..++||++.+..+..+.+|...|++++|.|+|.-+++|+. +++.++||
T Consensus 183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence 999999999999886 7789999999999999999999999999999999999999999999999986 77899999
Q ss_pred CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490 538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 617 (1068)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 617 (1068)
++....+..|.. ......|++++|+..|++|++|..|.++.+||.-.++.+..+.+|. ..|.++..+|||.-+++|+
T Consensus 258 lRaD~~~a~ys~-~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe--NRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 258 LRADQELAVYSH-DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE--NRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred ecCCcEEeeecc-CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC--CeeEEEEECCCCcEEEecc
Confidence 999999888884 3355789999999999999999999999999999999999999775 4699999999999999999
Q ss_pred CCCeEEEEE
Q 001490 618 NENRIKILE 626 (1068)
Q Consensus 618 ~dg~i~iwd 626 (1068)
.|.+++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-37 Score=323.56 Aligned_cols=482 Identities=16% Similarity=0.259 Sum_probs=360.0
Q ss_pred eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC
Q 001490 302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 381 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s 381 (1068)
..+++..|++.|.++.|+|... .+.++-.+|.|.|||.++...++.+.+ .+-+|++..|-
T Consensus 5 ~krk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfi 64 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFI 64 (794)
T ss_pred hhhHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheee
Confidence 3456677999999999999998 556667789999999999988876332 56789999999
Q ss_pred CCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccC
Q 001490 382 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGH 460 (1068)
Q Consensus 382 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h 460 (1068)
+--+++++|+.|..|+||+.++++.++ .+..|.+.|.+++.+|... +++|+++|-+|++||.+.+ .+.++++||
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH 139 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGH 139 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCc
Confidence 999999999999999999999998666 7889999999999999998 8999999999999999865 677899999
Q ss_pred CCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC--CCEEEEEeeCCCCceeEEEEeC
Q 001490 461 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 461 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
...|.+++|.|. |...+++++-|++|++|.+....+..++.+|...|+++.+-+- ..+|++++. |..+++||.
T Consensus 140 ~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDy 214 (794)
T KOG0276|consen 140 EHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDY 214 (794)
T ss_pred ceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeec
Confidence 999999999987 5679999999999999999999999999999999999999874 469999875 778999999
Q ss_pred CCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490 539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 618 (1068)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 618 (1068)
++..+++++.||. ..|..+.|+|.-..+++|++||+++||+..+-++..++... ...+++++-.+.++.+++|.+
T Consensus 215 Qtk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 215 QTKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred chHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEecc
Confidence 9999999999999 99999999999999999999999999999998888887654 356899999998889999998
Q ss_pred CCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcc
Q 001490 619 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 698 (1068)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 698 (1068)
.|.|.+ .+....+...+. +.|+.+ |...
T Consensus 290 eg~i~v-~lgreeP~vsMd----------------------------------~~gKIi-----------wa~~------ 317 (794)
T KOG0276|consen 290 EGSVTV-KLGREEPAVSMD----------------------------------SNGKII-----------WAVH------ 317 (794)
T ss_pred CCcEEE-EccCCCCceeec----------------------------------CCccEE-----------EEcC------
Confidence 887654 332222221111 122221 1110
Q ss_pred cceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCC-C
Q 001490 699 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN-S 777 (1068)
Q Consensus 699 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 777 (1068)
+.|..+..-+ .+..+ ++..|+.+ .....+.+ -
T Consensus 318 ------------~ei~~~~~ks-------~~~~~---------------------------ev~DgErL-~LsvKeLgs~ 350 (794)
T KOG0276|consen 318 ------------SEIQAVNLKS-------VGAQK---------------------------EVTDGERL-PLSVKELGSV 350 (794)
T ss_pred ------------ceeeeeecee-------ccCcc---------------------------cccCCccc-cchhhhcccc
Confidence 0111111100 00000 11111100 00000000 1
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee
Q 001490 778 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 857 (1068)
Q Consensus 778 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 857 (1068)
.--...++-||+|+++++++||.-.||..-..+. ...+.-....|++ |....|+-..++.|+++ ++.+..+.
T Consensus 351 eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ks 422 (794)
T KOG0276|consen 351 EIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKS 422 (794)
T ss_pred ccchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceeccc
Confidence 1122457889999999999999988887532221 2445667889999 77778878788999998 66666655
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEE
Q 001490 858 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 937 (1068)
Q Consensus 858 ~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~v 937 (1068)
+...-. +..--.|.+|...+ ++.+++||-++++.. +...- ..-.+.|+.+|.+++.+.|...++
T Consensus 423 i~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lV-----rrI~v------~~k~v~w~d~g~lVai~~d~Sfyi 486 (794)
T KOG0276|consen 423 IRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELV-----RRIEV------TSKHVYWSDNGELVAIAGDDSFYI 486 (794)
T ss_pred cccccc----eeeecCCceEEEEe-CCeEEEEEcccceEE-----EEEee------ccceeEEecCCCEEEEEecCceeE
Confidence 542211 12222355555555 555999999986633 22222 234789999999999988888666
Q ss_pred EECC
Q 001490 938 YEAE 941 (1068)
Q Consensus 938 wd~~ 941 (1068)
+...
T Consensus 487 l~~n 490 (794)
T KOG0276|consen 487 LKFN 490 (794)
T ss_pred EEec
Confidence 6654
No 23
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=326.37 Aligned_cols=546 Identities=13% Similarity=0.161 Sum_probs=406.4
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~ 386 (1068)
..+.+.|.|++-+.+-- ++|.| ..|.+|. .|+.+.. .+.+|.+.|.-+. |=|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~--~fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLL--PFGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEe--eecce
Confidence 45778999998877652 43433 4566665 3443322 1556777777665 34889
Q ss_pred EEEEeCCcEEEEEEccCC-CcccceEEE-ccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490 387 LGVAYSKHIVQLYAYHGG-SDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~-~~~~~~~~~-~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 464 (1068)
++++..++.+.||+..++ +.......+ +...+.|+++. +|.---..++.|+.+|.+++||+.+++.+++++++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999885 221111122 22222377664 554322248889999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001490 465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 544 (1068)
Q Consensus 465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 544 (1068)
+++.-+|.- ..++.|..+|+|.+++++..+.+..++...+.|++++|..||..+.+.+.. .|.+.+||++..+.+
T Consensus 206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~---~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS---NGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC---CceEEEEEcCCCeee
Confidence 999876644 489999999999999999999999999888999999999999987766542 456999999998887
Q ss_pred eEEe-ccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcC--CCe--EEEEEeCCCCCCCCceEEEe-cCCCEEEEEEC
Q 001490 545 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQ--LLTTIDAGGGLPENPRICFN-KNGTLLAVIAN 618 (1068)
Q Consensus 545 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~ 618 (1068)
.... .|. +.+....|.|....+++++.|+.+++|=.+ .|. .++... +|..+..++.|. .+|..+.+++.
T Consensus 281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEeccc
Confidence 7776 444 789999999999999999999999988554 442 333333 345567889987 68999999999
Q ss_pred CCeEEEEECCCCceeeeccc------------------cccceeeeEEcCCccccccccccCeeeecCCC-CCCccccee
Q 001490 619 ENRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEIS 679 (1068)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s 679 (1068)
|++++.+++.....-+.+.. ...+|..+++. ... ....+.++.
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~------------------~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE------------------NAREKEWDNVITA 417 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc------------------cchhhhhcceeEE
Confidence 99999988763311111110 01112222211 111 223344555
Q ss_pred ecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCccc
Q 001490 680 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 759 (1068)
Q Consensus 680 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 759 (1068)
.-.+...+.|+......++...-.-+.......+.+++.++-|++.+.|.+.|.|-+|+++.+-
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi---------------- 481 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI---------------- 481 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe----------------
Confidence 5566778999987665544332222222245678999999999999999999999999876542
Q ss_pred CCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEE
Q 001490 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 838 (1068)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg 838 (1068)
....+ ...+.|..+|+.++...-++.+++++ +|.+.+||..+...+..++ -...++++..+. ...++|++
T Consensus 482 ------~r~sf-~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~ 552 (910)
T KOG1539|consen 482 ------HRKSF-GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIA 552 (910)
T ss_pred ------eeccc-ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhh
Confidence 11111 01234899999999999888888887 8999999999888777776 455788888888 77899999
Q ss_pred ECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEE
Q 001490 839 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 918 (1068)
Q Consensus 839 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 918 (1068)
..|-.|+++|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.......+. .+...+
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sl 623 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSL 623 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------Ccceee
Confidence 99999999999999999999999999999999999999999999999999999997755533332 258899
Q ss_pred EEeeCCCEEEEE-eC-CeEEEEECC
Q 001490 919 QFHKDQTRFLLV-HE-THLAIYEAE 941 (1068)
Q Consensus 919 ~~spdg~~la~~-~d-~~i~vwd~~ 941 (1068)
.|||.|.+||+. .| ..|++|.=.
T Consensus 624 s~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EECCCCCEEEEEEecCceEEEEEch
Confidence 999999999994 33 579999744
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=294.66 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=266.0
Q ss_pred eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490 367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446 (1068)
Q Consensus 367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 446 (1068)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++++||-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 488999999999999999999999999999999998875443 4556778899999999999 89999999999999
Q ss_pred ECCCC------ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCE
Q 001490 447 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 519 (1068)
Q Consensus 447 d~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 519 (1068)
++.+. +..+.+.+|.+.+.++.|.. ...|++++.|.+..+||+++++....+.+|.+.|.+++++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 34567899999999999865 34899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCC
Q 001490 520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 599 (1068)
Q Consensus 520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 599 (1068)
+++|+. |...++||++.+..+++|.+|+ ..|+++.|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999987 6679999999999999999999 999999999999999999999999999999999999998887778
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCccccee
Q 001490 600 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 679 (1068)
Q Consensus 600 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 679 (1068)
+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|.++..+ |||.-+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999996 77888999
Q ss_pred ecccccceeec
Q 001490 680 VEAENKSEVEK 690 (1068)
Q Consensus 680 ~~~d~~i~~wd 690 (1068)
++.|.++|+|.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-37 Score=286.02 Aligned_cols=294 Identities=17% Similarity=0.273 Sum_probs=252.4
Q ss_pred CCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEc
Q 001490 322 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 401 (1068)
Q Consensus 322 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~ 401 (1068)
..-+|++++.|.+|++|...+|.+.++ +......|..+...||+++||+++... |++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence 346899999999999999999999976 444678999999999999999997654 999999
Q ss_pred cCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEE
Q 001490 402 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 481 (1068)
Q Consensus 402 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 481 (1068)
.++... +..++.+|...|+++.|..||+ ++++|++||+++|||++...+.+.++ |..+|+++.++| +...|+++
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEee
Confidence 998754 5568999999999999999999 89999999999999999977766665 789999999987 55689999
Q ss_pred EcCCcEEEEeCCCCCceEEec-CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe------eeeEEecccccc
Q 001490 482 SVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQH 554 (1068)
Q Consensus 482 s~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~ 554 (1068)
..+|.|++||+....+...+. .....|.+++..|||.+++.+.. .|..++|++-++. ++.+++.|.
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~--- 215 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN--- 215 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence 999999999999887655443 34458999999999999999875 6679999987643 455566666
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceee
Q 001490 555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 634 (1068)
Q Consensus 555 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 634 (1068)
+.+..+.++|++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++++.|+..++|++..++.+.
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 88999999999999999999999999999988 33344444455679999999999999999999999999999999999
Q ss_pred eccccccceeeeEEc
Q 001490 635 AAGVLSDNLRKLSVN 649 (1068)
Q Consensus 635 ~~~~~~~~i~~~~~~ 649 (1068)
...+|.....|++..
T Consensus 295 qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 295 QYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCcccccEEEEee
Confidence 999998877776653
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-36 Score=285.84 Aligned_cols=295 Identities=16% Similarity=0.189 Sum_probs=249.2
Q ss_pred ccccccEEEEEEecC-CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEE
Q 001490 707 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 785 (1068)
Q Consensus 707 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 785 (1068)
.+|.+.|..++..+. ...++.++.|..+.+|++... |...|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 459999999999887 456777888999999998764 3334433333 33 4999999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecc--cc
Q 001490 786 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS 862 (1068)
Q Consensus 786 ~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~--h~ 862 (1068)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+.... +..++.. |.
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~ 148 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHR 148 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCc
Confidence 999999999998 89999999999999999999999999999999 8999999999999999999854 4444433 37
Q ss_pred cCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEE
Q 001490 863 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 939 (1068)
Q Consensus 863 ~~V~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd 939 (1068)
+.|.++.|+|+ ..+++++|.|++|++||+.+ .+..+.+.+|.. .++.+++||||.++++ +.|+.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence 89999999998 78999999999999999998 335566667665 8999999999999999 6889999999
Q ss_pred CCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCC
Q 001490 940 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1019 (1068)
Q Consensus 940 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1019 (1068)
++.++.+.. .+|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+.+....+ ........++.++|++ ||
T Consensus 221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999999764 3578999999999987666655 56679999999999998887554433 2345567889999999 79
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 001490 1020 TQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 1020 ~~l~~~~~dg~i~~w~~~ 1037 (1068)
+.|.+|.+||.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999985
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-35 Score=305.17 Aligned_cols=464 Identities=15% Similarity=0.216 Sum_probs=345.0
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
+..++..|.++.|+|....++++-.+|.|.|||.++...++ .+.....+|.+..|-+--+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44588999999999999999999999999999999988776 5666778999999998777 899999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCC-CceEEecCCCCcEEEEEEcc-CCCEEEEEee
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 525 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 525 (1068)
..|++.++.|..|.+.|++++.+|. ..+++++|.|-+|++||++.. .+.+.+.+|.+-|.+++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt--~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPT--LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCC--CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999985 469999999999999999875 45678999999999999999 6678999886
Q ss_pred CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC--CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490 526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 603 (1068)
Q Consensus 526 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 603 (1068)
|++|++|.+.+..+..++.+|. ..|+++.+-+- ..++++|++|.+|+|||.++..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 6679999999999999999999 89999999764 47999999999999999999999999997754 5999
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccc
Q 001490 604 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 683 (1068)
Q Consensus 604 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 683 (1068)
+.|+|.-..+++|+.||+++||+..+-+...++.-..++++
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW--------------------------------------- 273 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVW--------------------------------------- 273 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEE---------------------------------------
Confidence 99999999999999999999999887655555443333333
Q ss_pred ccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCC
Q 001490 684 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 763 (1068)
Q Consensus 684 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1068)
+++..+.+..++.|..+|.+.+ +
T Consensus 274 -------------------------------~I~~~k~~~~i~vG~Deg~i~v-~------------------------- 296 (794)
T KOG0276|consen 274 -------------------------------CIAAHKGDGKIAVGFDEGSVTV-K------------------------- 296 (794)
T ss_pred -------------------------------EEeecCCCCeEEEeccCCcEEE-E-------------------------
Confidence 3444444444555555544433 0
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC--CeEEEE------EccCceeEE----EecCCCCCeEEEEEeCCC
Q 001490 764 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD 831 (1068)
Q Consensus 764 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d 831 (1068)
-......+..++.|+.+-+... -.+.+- ++..|+++. .+-...-....++-|| +
T Consensus 297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N 362 (794)
T KOG0276|consen 297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N 362 (794)
T ss_pred -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence 0111122333344433322211 111111 223333221 1111111234678899 8
Q ss_pred CCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccC
Q 001490 832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 911 (1068)
Q Consensus 832 ~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 911 (1068)
|+++++++ ||.-.||..-.-+ ..+.+.-....|++|.+..++--.++.|+++ ++.+..+ ....
T Consensus 363 GrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k-----si~~---- 425 (794)
T KOG0276|consen 363 GRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK-----SIRP---- 425 (794)
T ss_pred CcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc-----cccc----
Confidence 98888665 8888888632211 1244556778999998888888778889988 4433222 1110
Q ss_pred CCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490 912 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982 (1068)
Q Consensus 912 ~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd 982 (1068)
-..+.+--.|.+|.+..++.+++||.++++.++.+-. ....+.|+.+|.+++.++.|. .++..
T Consensus 426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence 0112333456777778899999999999999987432 456789999999988887664 44443
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=312.98 Aligned_cols=583 Identities=16% Similarity=0.233 Sum_probs=404.9
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~ 386 (1068)
+..+..|..++|+|... .+.++-..|.|.+||..-+.++.. +.+|.++|..++|+|++.+
T Consensus 6 EskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qpl 65 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPL 65 (1202)
T ss_pred hcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCe
Confidence 44566899999999988 667788889999999999998876 7789999999999999999
Q ss_pred EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 466 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 466 (1068)
+++|+.|..|+||+.++.+++. ++.||.+.|..+.|++.-. +++++++|.+|+|||+.+++++..++||...|.|
T Consensus 66 FVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc 140 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC 140 (1202)
T ss_pred EEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence 9999999999999999987665 7889999999999999888 8999999999999999999999999999999999
Q ss_pred EeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001490 467 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 546 (1068)
Q Consensus 467 i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 546 (1068)
..|+|.+| .++++|-|.+||+||+...+....-.+ ++.-...+..+. .-++-...--....
T Consensus 141 AqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 141 AQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKHV 201 (1202)
T ss_pred eccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeeee
Confidence 99999765 999999999999999876544332211 000001111110 01111111223456
Q ss_pred EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001490 547 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 626 (1068)
Q Consensus 547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 626 (1068)
+.||. ..|+.++|+|.-..+++|++|+.|++|.+..-+.-..-...+|...|.++.|+|...++++.+.|++|++||
T Consensus 202 LEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 78888 889999999999999999999999999998766555555556677899999999999999999999999999
Q ss_pred CCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCC-----CCCcccceeecccccceeecccccCCcccce
Q 001490 627 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQS 701 (1068)
Q Consensus 627 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 701 (1068)
+.....+++++...++.+.++.+|.....+.|-..|.+.|.-.. .-.++.+.-.- |..|+-+|+.+........
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeEe
Confidence 99999999999999999999999999999988888887774332 22344444443 7889999988755555544
Q ss_pred eecCCccccccEEEEEEecCCceEEEee--cCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCC
Q 001490 702 LLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 779 (1068)
Q Consensus 702 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1068)
+..+.. ...+..++.++|....++.++ .+|...++.++........ .... . ...
T Consensus 358 lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~------------~~~~-------~----k~t 413 (1202)
T KOG0292|consen 358 LRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSD------------GKDV-------K----KGT 413 (1202)
T ss_pred ccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCC------------chhh-------h----cCC
Confidence 443322 345678899999877666554 3467777766543211000 0000 0 111
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec
Q 001490 780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 859 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~ 859 (1068)
...++-...++-.+..-++..+.+-++.. +..+.+... .....+-+.- .|.+|+. ....|.+||++..+.+..++
T Consensus 414 G~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 414 GEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred CCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe
Confidence 22223332222222222234444444432 122222211 2333444444 5655553 34579999999887777766
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEE
Q 001490 860 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 939 (1068)
Q Consensus 860 ~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd 939 (1068)
..+|.-+.||+|..+++--+. .+|.|.+.+- ..+....... +|-+-+|..+|-+|.+..+.-= |-
T Consensus 489 --~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL------~l~~sihEti----riksgawde~gVfiYtT~nHik--Ya 553 (1202)
T KOG0292|consen 489 --VSKVKYVVWSNDMSRVALLSK-HTITIADKKL------ELLCSIHETI----RIKSGAWDEDGVFIYTTLNHIK--YA 553 (1202)
T ss_pred --cCceeEEEEcCccchhhhccc-ceEEEEecch------hheecchhee----EeeeceeccCceEEEEehhhhh--hh
Confidence 456899999999998887664 4588887653 1222222222 4777888888888877543311 11
Q ss_pred CCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001490 940 AEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 987 (1068)
Q Consensus 940 ~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~ 987 (1068)
+.+|. .+++ + ..++.- +--.|..++.-..|+.+.+.+++.-+
T Consensus 554 l~~GD~GIikT-L---d~~iyi--tkv~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 554 LENGDSGIIKT-L---DKPIYI--TKVKGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred hccCCcceEEe-c---ccceEE--EEeeCCEEEEEecCCCeEEEeechHH
Confidence 11111 1111 1 112221 22356777777788888888777644
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.3e-36 Score=301.01 Aligned_cols=345 Identities=19% Similarity=0.268 Sum_probs=290.8
Q ss_pred CccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCC--CcceeeeeeeeeeccccccceeeeeecCCCcce
Q 001490 298 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 375 (1068)
Q Consensus 298 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 375 (1068)
.|....+.+. |+.+|.+.+|+|-..-++|+|+.|-+.++|++.. +.......+ ..|...--. -......|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~~--s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGGK--SVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhcc--cCCccCCc
Confidence 6777777777 9999999999998766889999999999999874 111110000 000000000 01124689
Q ss_pred EEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490 376 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 455 (1068)
Q Consensus 376 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 455 (1068)
++++|+.+|..||+|+.||.+++|+...+. +. ++..|.++|.++.|+.+|. ++++++.|+++.+||..+|...+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999998753 33 6788999999999999999 89999999999999999999999
Q ss_pred EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490 456 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 535 (1068)
Q Consensus 456 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 535 (1068)
.+.-|..+-..+.|-. ...+++.+.||.|+++.+....+..++.+|.++|.++.|.|.|.+|++++. |++++|
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999998866666643 247999999999999999999999999999999999999999999999986 778999
Q ss_pred EeCCCCeeeeEEeccccccCCeEEEEEecCC---------CEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490 536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 606 (1068)
Q Consensus 536 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 606 (1068)
|+.........+..|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|.+++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence 9999998888999988 899999999964 47889999999999999999999999755 457999999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccc
Q 001490 607 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 686 (1068)
Q Consensus 607 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 686 (1068)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999988776654
Q ss_pred eeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEec
Q 001490 687 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 739 (1068)
Q Consensus 687 ~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 739 (1068)
..+.|..+.|+.+|..+.++..+|.+.+.|+
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2345778899999999999999988888764
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=297.10 Aligned_cols=293 Identities=22% Similarity=0.334 Sum_probs=268.3
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
.+..+.|.+|...|+.+-|+|+-. ++++++.|++|++||..+|+.... ++||...|..++
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~ 157 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDIS 157 (406)
T ss_pred CCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEE
Confidence 356777889999999999999986 889999999999999999999765 889999999999
Q ss_pred ECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001490 380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 459 (1068)
Q Consensus 380 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 459 (1068)
|+..|++||+++.|-.+.+||.++- .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.+++++.+
T Consensus 158 ~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 158 FDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPG 233 (406)
T ss_pred EecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccC
Confidence 9999999999999999999999873 233336779999999999999998 899999999999999999999999999
Q ss_pred CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCC---------------CEEEEEe
Q 001490 460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCG 524 (1068)
Q Consensus 460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------------~~l~~~~ 524 (1068)
|...|..+.. ..||.++++++.|.+|++|-+.++.+...+..|+.++.+++|.|.. +++.+++
T Consensus 234 h~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 234 HSEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred chHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 9999999887 4589999999999999999999999999999999999999997732 4666666
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceE
Q 001490 525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 604 (1068)
Q Consensus 525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 604 (1068)
. |++|++||+.++.++.++.+|. ..|..++|+|.|+||+++.+|+++++||+++++++..+..+.+. +.++
T Consensus 312 r----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf--vt~l 382 (406)
T KOG0295|consen 312 R----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF--VTSL 382 (406)
T ss_pred c----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce--eEEE
Confidence 5 7789999999999999999999 99999999999999999999999999999999999999987664 8999
Q ss_pred EEecCCCEEEEEECCCeEEEEEC
Q 001490 605 CFNKNGTLLAVIANENRIKILET 627 (1068)
Q Consensus 605 ~~s~~~~~l~~~~~dg~i~iwd~ 627 (1068)
.|+.+..++++|+-|.++++|.-
T Consensus 383 Dfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999963
No 31
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=8.8e-33 Score=280.91 Aligned_cols=536 Identities=12% Similarity=0.145 Sum_probs=382.9
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
.+...-++|+. -=..+-+-|.|..+..++ +.+.+++++...+.. +.+|+..|.|++
T Consensus 56 LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~ 111 (626)
T KOG2106|consen 56 LEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMA 111 (626)
T ss_pred eEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEe
Confidence 34445556664 334566788887444444 567777776533222 678999999999
Q ss_pred ECCCCCEEEEEeCCc--------EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEE--EEeCCCcEEEEECC
Q 001490 380 WSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVI--TCGDDKTIKVWDAV 449 (1068)
Q Consensus 380 ~spdg~~las~~~d~--------~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~--s~~~d~~i~iwd~~ 449 (1068)
.+||.-.+|+|-..| .+++||..+-..+. .+......|.|++||+-..-.++. --+.+..+.+||..
T Consensus 112 vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWq 188 (626)
T KOG2106|consen 112 VHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQ 188 (626)
T ss_pred ecCCceeeccCcccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhch
Confidence 999999999774333 59999987654333 566677789999999853321333 33556679999999
Q ss_pred CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE---ecCC-CCcEEEEEEccCCCEEEEEee
Q 001490 450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAP-GLGCTRMAYSANGRRLFSCGT 525 (1068)
Q Consensus 450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~-~~~i~~~~~s~d~~~l~~~~~ 525 (1068)
.+......+..+..|....|+|.. ..|+.....|.+.+|+++.+..... +..+ ...|.|++|.++|..+- +
T Consensus 189 k~~~~~~vk~sne~v~~a~FHPtd--~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g-- 263 (626)
T KOG2106|consen 189 KKAKLGPVKTSNEVVFLATFHPTD--PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G-- 263 (626)
T ss_pred hhhccCcceeccceEEEEEeccCC--CcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e--
Confidence 998888888788889999999863 3455556678999999887765443 2222 25799999999998664 3
Q ss_pred CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEE
Q 001490 526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 605 (1068)
Q Consensus 526 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 605 (1068)
|.++.|.||+..+.+..+....|. +.|.+++...+|. |++|+.|+.|..|| ..-+.++..+.+.....+..++
T Consensus 264 --DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 264 --DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred --cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEe
Confidence 237789999998887777766666 9999999999885 55699999999999 5555555555555555566555
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccc
Q 001490 606 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 685 (1068)
Q Consensus 606 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 685 (1068)
=.. .-|++|+..+.|..=.++++-.+.
T Consensus 337 e~~--~di~vGTtrN~iL~Gt~~~~f~~~--------------------------------------------------- 363 (626)
T KOG2106|consen 337 EGK--GDILVGTTRNFILQGTLENGFTLT--------------------------------------------------- 363 (626)
T ss_pred cCC--CcEEEeeccceEEEeeecCCceEE---------------------------------------------------
Confidence 332 227777766665443333321111
Q ss_pred ceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCC
Q 001490 686 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 765 (1068)
Q Consensus 686 i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1068)
..+|......++..|+...+++++.|+.+++|+ ..+ ..|.
T Consensus 364 --------------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt----- 403 (626)
T KOG2106|consen 364 --------------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWT----- 403 (626)
T ss_pred --------------------EEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEE-----
Confidence 023556677788888888899999999999997 111 1121
Q ss_pred ceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeE
Q 001490 766 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 844 (1068)
Q Consensus 766 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 844 (1068)
.. -..+..|+.|+|.| .+|.|. .|...+.|+++...+..-. ...++++++|+| +|.+||.|+.|+.|
T Consensus 404 ----~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 404 ----KI-----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHI 471 (626)
T ss_pred ----EE-----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeE
Confidence 11 35678899999999 888887 7999999999955554444 488999999999 99999999999999
Q ss_pred EEEEcCCc-eeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeee--------------ecCCCc
Q 001490 845 LIYNARSS-EVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL--------------QTPDGV 908 (1068)
Q Consensus 845 ~iwd~~~~-~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~ 908 (1068)
+||.+... ...... +.|..+|+.+.||+|+++|.+.+.|-.|-.|.-.. +...... ....+.
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~~ts~kDvkW~t~~c~lGF~v~g~s 549 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQITSVKDVKWATYTCTLGFEVFGGS 549 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--CcccceecceeeeeeEEEEEEEEeccc
Confidence 99998754 332222 22448999999999999999999999999994322 1111110 111111
Q ss_pred ccCCCCceEEEEeeCCCEEEEEe-CCeEEEEECCCcee--eeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001490 909 MTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 983 (1068)
Q Consensus 909 ~~~~~~v~~~~~spdg~~la~~~-d~~i~vwd~~~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~ 983 (1068)
...-+..++-|.+++++|++. .|+|++|...--+. ......+|++.|++++|+.+...+++.+.|.+|..|++
T Consensus 550 --~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 550 --DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred --CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 113466677778888888864 57899998863332 23336789999999999999999999999999999986
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.6e-35 Score=288.43 Aligned_cols=336 Identities=15% Similarity=0.187 Sum_probs=290.9
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
...+.++..|++.|.+++.+|+.+ ++|||+.|....||+..+|+.... +.+|+..|+++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~ 113 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS 113 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence 445788999999999999999775 999999999999999999997765 889999999999
Q ss_pred ECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001490 380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 459 (1068)
Q Consensus 380 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 459 (1068)
||.||.+||+|+.+|.|.||+..++.... .+......+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+.|
T Consensus 114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence 99999999999999999999999987554 4445567788999999988 899999999999999999888899999
Q ss_pred CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC-CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490 460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
|..++++=.|.| +|+.++++..||+|++|+..+..+...+... .....++.++.++..++.|.. ++.+++-+.
T Consensus 189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~ 262 (399)
T KOG0296|consen 189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN 262 (399)
T ss_pred CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence 999999999976 7899999999999999999999988877643 346778899999999988875 556888888
Q ss_pred CCCeeeeEEec--------cccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490 539 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 610 (1068)
Q Consensus 539 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 610 (1068)
.+|+.+....+ +......|.++.++..-...++|+-||+|.|||+...++.+..... .+|..+.|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-c
Confidence 88888777663 2211233455555666677889999999999999998888887655 3489999998 7
Q ss_pred CEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeec
Q 001490 611 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 690 (1068)
Q Consensus 611 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd 690 (1068)
.+|++++.+|.|+.||.++++++....+|...|.+++++ |+.+++++++.|++.++|+
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence 899999999999999999999999999999999999996 7889999999999999987
Q ss_pred cc
Q 001490 691 PL 692 (1068)
Q Consensus 691 ~~ 692 (1068)
..
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 53
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=283.84 Aligned_cols=339 Identities=18% Similarity=0.228 Sum_probs=288.1
Q ss_pred EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEe
Q 001490 412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 491 (1068)
Q Consensus 412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd 491 (1068)
.|..|+..|.+++.+|+.+ +++|||.|..-.+|++.+|..+..+.+|...|+++.|+. +|.+|++|+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 6789999999999999877 899999999999999999999999999999999999976 888999999999999999
Q ss_pred CCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE
Q 001490 492 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 571 (1068)
Q Consensus 492 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 571 (1068)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+++++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999998878888999999999999999986 6679999999988889999988 99999999999999999
Q ss_pred EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCC
Q 001490 572 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 651 (1068)
Q Consensus 572 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 651 (1068)
+..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+++-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999999875543 3467899999999999999999888877665543322110
Q ss_pred ccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecC
Q 001490 652 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 731 (1068)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 731 (1068)
.+..+-....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~e- 283 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQE- 283 (399)
T ss_pred ---------------------------------------------------------------------CCccccccch-
Confidence 0000000000
Q ss_pred ccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCce
Q 001490 732 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 810 (1068)
Q Consensus 732 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~ 810 (1068)
.....|..+.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus 284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 0123344445555667778888 8999999998776
Q ss_pred eEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490 811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 811 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd 890 (1068)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||...|.+++++|++++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 655554 888899999986 56889999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 001490 891 VD 892 (1068)
Q Consensus 891 ~~ 892 (1068)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 75
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=267.95 Aligned_cols=295 Identities=17% Similarity=0.262 Sum_probs=252.3
Q ss_pred cEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEeccccc
Q 001490 476 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 553 (1068)
Q Consensus 476 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 553 (1068)
-+|++++.|.+||+|...++.+..++.-..+.|+.+.++||++.|++++ ...|++||+++++ ++.+|.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 4899999999999999999999999999999999999999999999986 4569999999865 588999998
Q ss_pred cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCcee
Q 001490 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 633 (1068)
Q Consensus 554 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1068)
..|.++.|..+|+++++|++||+++|||++.....+.+... .+|+++..+|+...|+++..+|.|++||+.+....
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999996666666543 56999999999999999999999999999876433
Q ss_pred eeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccE
Q 001490 634 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 713 (1068)
Q Consensus 634 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i 713 (1068)
..+- |+ ....|
T Consensus 160 ~~li-------------------------------------------------------------------Pe--~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------PE--DDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------CC--CCcce
Confidence 2221 11 33568
Q ss_pred EEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE
Q 001490 714 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 793 (1068)
Q Consensus 714 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 793 (1068)
.++.+.|||..++++...|..++|++..... .....| +. ..+.|...+..+.+|||+++|
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------~s~l~P-----~~----k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------ASELEP-----VH----KFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------cccceE-----hh----heecccceEEEEEECCCCcEE
Confidence 8999999999999999999999999765221 000011 01 112488999999999999999
Q ss_pred EEEe-CCeEEEEEccCc-eeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEc
Q 001490 794 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 871 (1068)
Q Consensus 794 ~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 871 (1068)
|+++ |.+++||++++. +....+.+|...+..++||. |+++|++|+.|+.+++|++..++.+....+|..+..|++..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9998 899999999988 66778899999999999999 99999999999999999999999999999999888888764
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.2e-35 Score=283.96 Aligned_cols=297 Identities=18% Similarity=0.259 Sum_probs=268.0
Q ss_pred CccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490 298 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 377 (1068)
Q Consensus 298 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 377 (1068)
.|-.+.+.+.+|.+.|.|+++.|-++ ++++|+.|++|+|||+.+|++..+ +.||-..|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence 45678899999999999999999876 789999999999999999998876 8899999999
Q ss_pred EEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001490 378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 457 (1068)
Q Consensus 378 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 457 (1068)
+++|+--.||.+++.|+.|+-||++.++.++ .+.||-..|.|++..|.-+ .|++|+.|.++++||+++...+..+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999998877 6779999999999999988 8999999999999999999999999
Q ss_pred ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490 458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 537 (1068)
Q Consensus 458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 537 (1068)
.||..+|.++.+.+. ...+++||.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|.-|+
T Consensus 274 ~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~w~ 346 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQWK 346 (460)
T ss_pred cCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cceecc
Confidence 999999999988654 3489999999999999999999999999999999999999999999998753 499999
Q ss_pred CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEe---CCC---CCCCCceEEEecCCC
Q 001490 538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKNGT 611 (1068)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~~~ 611 (1068)
+..|..+..+.+|. ..|++++.+.|+ ++++|+++|.|.+||.++|...+... ..+ ....|.+.+|...|.
T Consensus 347 ~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~ 422 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS 422 (460)
T ss_pred CCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCc
Confidence 99999999988888 899999998876 88999999999999999987665542 111 123578899999999
Q ss_pred EEEEEECCCeEEEEECCCC
Q 001490 612 LLAVIANENRIKILETPES 630 (1068)
Q Consensus 612 ~l~~~~~dg~i~iwd~~~~ 630 (1068)
.|+++..|.+|++|.-++.
T Consensus 423 rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 423 RLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eEEeccCCcceEEEecccc
Confidence 9999999999999986643
No 36
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.1e-31 Score=278.71 Aligned_cols=550 Identities=12% Similarity=0.118 Sum_probs=390.4
Q ss_pred cceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccc-cccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490 373 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 451 (1068)
Q Consensus 373 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 451 (1068)
..|.++|||.+.+.||.+-.+|.|.+|++..+-... ..+.++ ...|.+++|++.++ |++.+.+|.|.-||+.++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHTL 100 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecccC
Confidence 589999999999999999999999999999864332 355555 45899999997665 889999999999999999
Q ss_pred ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE--EecCCCCcEEEEEEccCCCEEEEEeeCCCC
Q 001490 452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG 529 (1068)
Q Consensus 452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 529 (1068)
+.+..+....+.|++++.++.. ..++.|++||.+...+........ .+....+.+.+++|+|++..++.|+.
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~---- 174 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI---- 174 (691)
T ss_pred ceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc----
Confidence 9999999999999999998854 589999999977777776665544 34445678999999999999999986
Q ss_pred ceeEEEEeCCCCeeeeEEe----ccc-cccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceE
Q 001490 530 ESFLVEWNESEGAIKRTYQ----GLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 604 (1068)
Q Consensus 530 ~~~i~~wd~~~~~~~~~~~----~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 604 (1068)
|+.|++||..++..+.... +.. ....-|+++.|-.+ ..|++|...|+|.+||...+.+++....+. ..|.++
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~L 251 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLAL 251 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhh--cceeEE
Confidence 7789999999988766222 111 01234778888755 479999999999999999999999988774 459999
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccc
Q 001490 605 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 684 (1068)
Q Consensus 605 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 684 (1068)
+..+++..+++++.|+.|..+...++..-
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~--------------------------------------------------- 280 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSE--------------------------------------------------- 280 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccc---------------------------------------------------
Confidence 99999999999999999988877654210
Q ss_pred cceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCC
Q 001490 685 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 764 (1068)
Q Consensus 685 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1068)
|-. ..+...|...+++++..++ .+++++.|..+.+-..... +..+-
T Consensus 281 ----wv~-----------~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~--------------~~~~h--- 326 (691)
T KOG2048|consen 281 ----WVI-----------NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREF--------------KNMDH--- 326 (691)
T ss_pred ----eee-----------eccccCCcccceeeeeecc--eEEecceeeEEEEcccccc--------------Cchhh---
Confidence 100 0011237778888888877 6888888887776432210 00000
Q ss_pred CceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCcee---------EEEecCCCCCeEEEEEeCCCCCEE
Q 001490 765 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVI 835 (1068)
Q Consensus 765 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~l 835 (1068)
.+...+ ... .-+...|..++++...+..+.+|.+.+... .+........|.|.+.|| +|+++
T Consensus 327 --~~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~I 397 (691)
T KOG2048|consen 327 --RQKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLI 397 (691)
T ss_pred --hccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEE
Confidence 000000 011 123455666677777788888998865521 222233556899999999 99999
Q ss_pred EEEECCCeEEEEEcCCceeee-----eecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeeecCCCcc
Q 001490 836 AIGMDDSTILIYNARSSEVIS-----KLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVM 909 (1068)
Q Consensus 836 asg~~dg~v~iwd~~~~~~~~-----~~~~h~~~V~~l~~spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 909 (1068)
|.+. -..++||.+.....+. ......-....+.|+-|+..++.++ .+..+.+.++++........++.. ...
T Consensus 398 a~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~ 475 (691)
T KOG2048|consen 398 AIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKC 475 (691)
T ss_pred EEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCC
Confidence 9876 3458888887532221 1222334577889999999888888 677888888887654443333322 122
Q ss_pred cCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCc
Q 001490 910 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLE 987 (1068)
Q Consensus 910 ~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vwd~~~~~ 987 (1068)
+.|..++.||||++||+ +..+.|.+|++++++.-.... .-...++.++|+| +-..|+.+..++.|.-+|++..+
T Consensus 476 ---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 476 ---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred ---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 47999999999999998 789999999999887654321 2357899999995 55678888899999999996555
Q ss_pred EEEEecccc-ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001490 988 VQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 988 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
+-....... .+|.......-....+.|+|.+ ...+...+.+-+++.|.+
T Consensus 552 l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 552 LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred hhhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecC
Confidence 332222111 1111111111223567788854 444444455566777664
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=266.01 Aligned_cols=292 Identities=22% Similarity=0.336 Sum_probs=240.4
Q ss_pred eeeecccCCCCceEEEEcCC-CCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 302 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~v~~spd-g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
..+++.+|++.|+.++|+|- |. +||+|+.|+.|+||+...+.-... +..+-.+|+..|+++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 56788999999999999998 76 899999999999999986433221 12224579999999999
Q ss_pred CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC---ceeeEe
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 457 (1068)
Q Consensus 381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 457 (1068)
+|.|+|||+++.|.++.||.-..++ ......+.||...|.|++|+++|. +|++++.|+.|-||.+..+ .++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999887654 555668999999999999999999 8999999999999998754 456788
Q ss_pred ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCC---CceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490 458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 534 (1068)
Q Consensus 458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 534 (1068)
+.|...|..+.|+|..+ +|++++.|.+|++|+-... .+...+.++...|.+++|++.|..|++++. +++++
T Consensus 147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 99999999999999765 9999999999999986632 357788899999999999999999999986 67899
Q ss_pred EEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCe------EEEEEeCCCCCCCCceEEEec
Q 001490 535 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 608 (1068)
Q Consensus 535 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 608 (1068)
||-..+. +.+. +...++.+.|. ...|++++.|+.|++|.-...- .+... .+.|...|+++.|+|
T Consensus 221 Iw~~~~~-----~~~~--~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYTD-----LSGM--HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeeccC-----cchh--cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 9975422 2221 24778999998 4579999999999999766421 11111 122344799999999
Q ss_pred C-CCEEEEEECCCeEEEEECC
Q 001490 609 N-GTLLAVIANENRIKILETP 628 (1068)
Q Consensus 609 ~-~~~l~~~~~dg~i~iwd~~ 628 (1068)
. ..+|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-32 Score=296.15 Aligned_cols=578 Identities=14% Similarity=0.171 Sum_probs=396.9
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
+...+..|..++|+|....++++-..|.|++||..-+.++. .+.+|.++|..++|+|++. ++++||+|..|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34466789999999999999999999999999999998777 6789999999999999999 999999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 527 (1068)
..+.+++.++.||-+.|+.+.|++. -.+++++|.|.+|++|++.+.+++..+.+|.+-|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 9999999999999999999999874 469999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490 528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 607 (1068)
Q Consensus 528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 607 (1068)
|.+|++||+..-+....-.+ ++.=...+..+ ..-++--.+.-....+.+| ..+|+-++|+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~-------~~dLfg~~DaVVK~VLEGH--DRGVNwaAfh 215 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQG-------NSDLFGQTDAVVKHVLEGH--DRGVNWAAFH 215 (1202)
T ss_pred --cceEEEEeecchhccCCCCC---------Cchhhhhcccc-------chhhcCCcCeeeeeeeccc--ccccceEEec
Confidence 66799999864332111111 00000011111 0011111112223344444 5579999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCc--eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccc
Q 001490 608 KNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 685 (1068)
Q Consensus 608 ~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 685 (1068)
|.-.++++|++|..|++|.+...+ .+.+.++|-+.|.++.|+ |....+++.+.|++
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsEDks 273 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSEDKS 273 (1202)
T ss_pred CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCCCcc
Confidence 999999999999999999998765 456789999999999997 56788999999999
Q ss_pred ceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCC--Ccc---ceeccCCcccC
Q 001490 686 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL--STE---ATTKVPPRLYQ 760 (1068)
Q Consensus 686 i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~---~~~~~~~~~~~ 760 (1068)
||+||+......+++.. ...+...++..|..+.++ ++-|+.+.+|.+..+.... .+. ......++.+|
T Consensus 274 irVwDm~kRt~v~tfrr------endRFW~laahP~lNLfA-AgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d 346 (1202)
T KOG0292|consen 274 IRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFA-AGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYD 346 (1202)
T ss_pred EEEEecccccceeeeec------cCCeEEEEEecCCcceee-eecCCceEEEEEcccCceEEEcCCEEEEEccceEEeee
Confidence 99999987666555432 456788999999999555 4555566778877544310 110 11223455566
Q ss_pred CCCCCceeeecCCCCC-CCCCeeEEEEecCCCEEEEEe---CCeEEEEEccCceeEEE---ecCCCCCeEEEEEeCCCCC
Q 001490 761 PRHGPQFMVNDTTDSN-SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNN 833 (1068)
Q Consensus 761 ~~~~~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~ 833 (1068)
..+.+-.....+...+ ...++.++.++|....+..++ .+...++.+........ -........++-... ++
T Consensus 347 ~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nr 424 (1202)
T KOG0292|consen 347 LRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NR 424 (1202)
T ss_pred ccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cc
Confidence 6554433333333211 246788999999877776664 35555665543211100 000111222332222 22
Q ss_pred EEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCC
Q 001490 834 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 913 (1068)
Q Consensus 834 ~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 913 (1068)
+.+---.+..+.+=++.+ +..+.+..- ..+..+-+.-+|.+|+. + ...|.++|++..+... .++. .
T Consensus 425 favl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag~g~lll~-~-~~~v~lfdvQq~~~~~--si~~--------s 490 (1202)
T KOG0292|consen 425 FAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAGTGNLLLR-S-PDSVTLFDVQQKKKVG--SIKV--------S 490 (1202)
T ss_pred eEEEEecCcceEEecccc-hhhhcccCc-ccccceeeccCccEEEE-c-CCeEEEEEeecceEEE--EEec--------C
Confidence 333223344555555543 222333211 23445666667766664 3 4459999999754322 1222 2
Q ss_pred CceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc--EEEE
Q 001490 914 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCR 991 (1068)
Q Consensus 914 ~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~--~~~~ 991 (1068)
.+..+.||+|+.++|.-+..+|.|.+.+ .+.+..+. ..-+|.+-+|..||-+|.+.... |+ |-+.+|. .++.
T Consensus 491 ~vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sih--Etiriksgawde~gVfiYtT~nH--ik-Yal~~GD~GIikT 564 (1202)
T KOG0292|consen 491 KVKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIH--ETIRIKSGAWDEDGVFIYTTLNH--IK-YALENGDSGIIKT 564 (1202)
T ss_pred ceeEEEEcCccchhhhcccceEEEEecc-hhheecch--heeEeeeceeccCceEEEEehhh--hh-hhhccCCcceEEe
Confidence 5889999999999999888999999864 33333211 14578888999999888876532 32 3333331 2222
Q ss_pred eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001490 992 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1041 (1068)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~ 1041 (1068)
+ ..+++++.+. |+.+.+-..|+.+...+|...+.
T Consensus 565 L-----------d~~iyitkv~-----gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 565 L-----------DKPIYITKVK-----GNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred c-----------ccceEEEEee-----CCEEEEEecCCCeEEEeechHHH
Confidence 2 2346666663 78999999999999999876653
No 39
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=273.06 Aligned_cols=523 Identities=13% Similarity=0.187 Sum_probs=376.1
Q ss_pred EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--------cEEEEEC
Q 001490 377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA 448 (1068)
Q Consensus 377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--------~i~iwd~ 448 (1068)
.+-+-|.|..+.... +.+.+++++...+ +.+.+|...|.|++.+||.- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Q----r~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQ----RHYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhc----ccccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 466778887765542 3456677755221 14669999999999999876 666653333 5999998
Q ss_pred CCCceeeEeccCCCcEEEEeeeecCCccEEEEEE--cCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCC-EEEEEee
Q 001490 449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGT 525 (1068)
Q Consensus 449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~ 525 (1068)
.+-..++.+......|.+++|++.+.|.+|.... .+..+.+||+..+.........+..+....|.|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 8888888888788899999999988887777764 456789999998888777777777889999999655 455554
Q ss_pred CCCCceeEEEEeCCCCeeeeE---EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCc
Q 001490 526 SKEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 602 (1068)
Q Consensus 526 ~~~~~~~i~~wd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 602 (1068)
.+.++.|+.+.+...++ |..+. ...|.+++|.++|. +++|..+|.|.||+..+.+..+....| ...|.
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~ 291 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVF 291 (626)
T ss_pred ----CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceE
Confidence 67899999998876655 34443 36799999999885 789999999999999887777666644 45699
Q ss_pred eEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecc
Q 001490 603 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 682 (1068)
Q Consensus 603 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 682 (1068)
+++.-.+|.+|- |+.|..|..|| ..-+.++..+-
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~el-------------------------------------------- 325 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETEL-------------------------------------------- 325 (626)
T ss_pred EEEEecCccEee-cCccceEEecc-ccccccccccC--------------------------------------------
Confidence 999999997666 99999999999 32222221110
Q ss_pred cccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCC
Q 001490 683 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 762 (1068)
Q Consensus 683 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1068)
|+ ..+.|+.++-. +..|+.|...+.|.-=.+ .
T Consensus 326 ----------------------Pe--~~G~iRtv~e~--~~di~vGTtrN~iL~Gt~----------------------~ 357 (626)
T KOG2106|consen 326 ----------------------PE--QFGPIRTVAEG--KGDILVGTTRNFILQGTL----------------------E 357 (626)
T ss_pred ----------------------ch--hcCCeeEEecC--CCcEEEeeccceEEEeee----------------------c
Confidence 11 12223322221 111444444433322111 1
Q ss_pred CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECC
Q 001490 763 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 841 (1068)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 841 (1068)
++..+.. .+|......++.+|+...+++++ |+.+++|+ ..++..+.. ...+..|+.|.| .| .+|.|+..
T Consensus 358 ~~f~~~v-----~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~ 427 (626)
T KOG2106|consen 358 NGFTLTV-----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTAT 427 (626)
T ss_pred CCceEEE-----EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeecc
Confidence 1111111 14778889999999999898888 89999999 445554443 456889999999 77 99999999
Q ss_pred CeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEe
Q 001490 842 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 921 (1068)
Q Consensus 842 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 921 (1068)
|...+.|.++...+..-.. ..++++++|+|||.+||.|+.|+.|+||.++.+...-. .+....+ .+|+.+.||
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS 500 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWS 500 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeec
Confidence 9999999999665554444 88999999999999999999999999999987553322 2222333 379999999
Q ss_pred eCCCEEEE-EeCCeEEEEECCCceeeee-----------------eccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001490 922 KDQTRFLL-VHETHLAIYEAEELTCLKQ-----------------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 983 (1068)
Q Consensus 922 pdg~~la~-~~d~~i~vwd~~~~~~~~~-----------------~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~ 983 (1068)
+|+++|.+ +.|-.|..|....-..+.. ....|...|..++-+.+.+++++|...|.|++|..
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 99999999 7888899995432221111 11235677788888889999999999999999998
Q ss_pred CCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001490 984 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
.--+..+.+. .+..+ +. ...+++|.-.| ..|++.++|..|..|++
T Consensus 581 Pc~s~rA~~h--e~~gh---s~--~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 581 PCSSPRAPSH--EYGGH---SS--HVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccCCCcccce--eeccc---cc--eeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 8665553332 22222 23 33467787644 66666669999999987
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-33 Score=284.97 Aligned_cols=279 Identities=19% Similarity=0.302 Sum_probs=252.3
Q ss_pred CCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE
Q 001490 311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 390 (1068)
Q Consensus 311 ~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~ 390 (1068)
..|++++|+.+|. +||+|+.||.++||+...+ ++.+ +..|+++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 4799999999997 8899999999999997644 4433 66799999999999999999999
Q ss_pred eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeee
Q 001490 391 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 470 (1068)
Q Consensus 391 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 470 (1068)
+.|+++.+||..+|+... .+.-|..+-.++.|-.+.. +++++.|+.|+|+.+....++.++.+|.++|.++.|.
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999987544 4567887778899987775 9999999999999999999999999999999999996
Q ss_pred ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCC---------EEEEEeeCCCCceeEEEEeCCCC
Q 001490 471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR---------RLFSCGTSKEGESFLVEWNESEG 541 (1068)
Q Consensus 471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~---------~l~~~~~~~~~~~~i~~wd~~~~ 541 (1068)
| .|.+|+++|.|+++++|..........+..|...|..+.|+|+|. .+++++. +++|++||+..+
T Consensus 369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 6 668999999999999999999999999999999999999999653 5677765 778999999999
Q ss_pred eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001490 542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 621 (1068)
Q Consensus 542 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 621 (1068)
.++.+|..|+ .+|++++|+|+++++++|+.||.|.+|+..+++..+.....+ .|..++|+.+|..+..+..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999998 999999999999999999999999999999999999997654 3899999999999999999999
Q ss_pred EEEEECC
Q 001490 622 IKILETP 628 (1068)
Q Consensus 622 i~iwd~~ 628 (1068)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-34 Score=260.81 Aligned_cols=292 Identities=15% Similarity=0.222 Sum_probs=253.2
Q ss_pred CCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490 297 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 376 (1068)
Q Consensus 297 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 376 (1068)
.+|....++|..|+++|.++.|.-||+ +..+++.|.+|++|+...|.++++ +.+|...|.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl 63 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL 63 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence 457778889999999999999999999 567777889999999999999987 889999999
Q ss_pred EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC--cee
Q 001490 377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRT 454 (1068)
Q Consensus 377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~ 454 (1068)
.++.+.|...+++|+.|+.+.+||+++|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++. +++
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence 99999999999999999999999999998777 7889999999999999998 9999999999999998754 677
Q ss_pred eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490 455 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 534 (1068)
Q Consensus 455 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 534 (1068)
+.+......|.++.+ .+..+++|+.||++|.||++.+.....+ .+.+|++++|++|++..++++- ++.++
T Consensus 139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr 208 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR 208 (307)
T ss_pred chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence 888888899999987 4468999999999999999887665444 4558999999999999998876 66899
Q ss_pred EEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490 535 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614 (1068)
Q Consensus 535 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 614 (1068)
+.|-.+|++++.+.||......+ .++++.....+++|++||.+++||+.....+..+..++. ..+..++++|....++
T Consensus 209 LlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI 286 (307)
T ss_pred ecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence 99999999999999998444444 345677778999999999999999999999999987754 3478999999877777
Q ss_pred EEECCCeEEEEE
Q 001490 615 VIANENRIKILE 626 (1068)
Q Consensus 615 ~~~~dg~i~iwd 626 (1068)
++... .+..|.
T Consensus 287 ~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 287 TATGH-GDLFWY 297 (307)
T ss_pred EecCC-ceecee
Confidence 77653 455554
No 42
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.3e-34 Score=309.44 Aligned_cols=278 Identities=18% Similarity=0.259 Sum_probs=242.5
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCccee--------eeeeeee----eccccccc
Q 001490 295 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVW----DIGACSML 362 (1068)
Q Consensus 295 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~--------~~~~~~~----~~~~~~~~ 362 (1068)
...+|.-|..++..-...++|+.||+|+. ++|.|-.|..|++|.+...+... ..+...- +.......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 45677888888887667999999999998 88999999999999998533111 1100000 11111222
Q ss_pred eeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCc
Q 001490 363 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 442 (1068)
Q Consensus 363 ~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 442 (1068)
.....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++- .+.||..+|+++.|+|-|- ++||++.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3344588999999999999999999999999999999999976554 6789999999999999998 8999999999
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEE
Q 001490 443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 522 (1068)
Q Consensus 443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 522 (1068)
.++|......+++.+.+|-+.|.|+.|+| |..++++||.|.+||+||..++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999999999999999999999999998 5569999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 001490 523 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 587 (1068)
Q Consensus 523 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 587 (1068)
|+. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 976 7789999999999999999998 999999999999999999999999999987543
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.6e-33 Score=267.33 Aligned_cols=290 Identities=18% Similarity=0.219 Sum_probs=251.5
Q ss_pred eecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC
Q 001490 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 383 (1068)
Q Consensus 304 ~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd 383 (1068)
..|.+|+++|..+.|+|+|. ++|+|+.|..|.+|++.....- ...+++|++.|..+.|.+|
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRD 101 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccC
Confidence 34679999999999999997 7899999999999997643221 1127799999999999999
Q ss_pred CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490 384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 463 (1068)
Q Consensus 384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 463 (1068)
+..|++++.|++|+.||+++|+.++ .+++|..-|+.+.-+.-|.. ++.+++.|+++++||+++...++++. ..-.
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9999999999999999999998777 67799999999996666665 78899999999999999998888775 4567
Q ss_pred EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC---
Q 001490 464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--- 540 (1068)
Q Consensus 464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~--- 540 (1068)
+++++|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+.+. +.++++||++-
T Consensus 177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence 88888854 5668999999999999999999999999999999999999999999999875 77899999874
Q ss_pred -CeeeeEEecccc-ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490 541 -GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 618 (1068)
Q Consensus 541 -~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 618 (1068)
.+++..+.++.. .......++|+|++..+-+|+.|..+++||......+..+++|. ..|+++.|+|....|.+++.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence 455778887651 12346678999999999999999999999999989999988774 46999999999999999999
Q ss_pred CCeEEEE
Q 001490 619 ENRIKIL 625 (1068)
Q Consensus 619 dg~i~iw 625 (1068)
|.+|++=
T Consensus 329 dk~i~lg 335 (338)
T KOG0265|consen 329 DKTIYLG 335 (338)
T ss_pred CceeEee
Confidence 9999874
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-34 Score=281.56 Aligned_cols=292 Identities=16% Similarity=0.177 Sum_probs=252.0
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
+..|.+.|+.+.||++|+|||+++.|.+..+|++.....++...++.+|..+|..+.||||.+ +|++|+.|..+.+||
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLWD 297 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeecc
Confidence 778999999999999999999999999999999987776777778999999999999999999 899999999999999
Q ss_pred CCCCceeeEec-cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490 448 AVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 448 ~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 526 (1068)
+.+|...+.+. +|...+.+++|.| ||..+++|+.|+.+..||++......--......|.+++.++||+++++...
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~- 374 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV- 374 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-
Confidence 99999887763 3568899999976 7889999999999999998765432222223357899999999999998876
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490 527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 606 (1068)
Q Consensus 527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 606 (1068)
+..|++++..+.........+ .+|++.+.+.+++++++--.+..+.+||++....+..+.++.....+..-+|
T Consensus 375 ---d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 375 ---DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred ---ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 556999998877665444443 5899999999999999999999999999998888888887765555556666
Q ss_pred ec-CCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccc
Q 001490 607 NK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 685 (1068)
Q Consensus 607 s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 685 (1068)
.- +..++++|++|+.|+||+..+++++..+.||...+++++++| .+..++|+++.||+
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDDGT 506 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCCCe
Confidence 65 558999999999999999999999999999999999999996 46678999999999
Q ss_pred ceeeccc
Q 001490 686 SEVEKPL 692 (1068)
Q Consensus 686 i~~wd~~ 692 (1068)
||+|-..
T Consensus 507 IRIWg~~ 513 (519)
T KOG0293|consen 507 IRIWGPS 513 (519)
T ss_pred EEEecCC
Confidence 9999865
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=274.81 Aligned_cols=285 Identities=20% Similarity=0.282 Sum_probs=263.7
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
+.+|..+|+.+-|+|+--..++++.|++|++||..+|+..+ .++||...|.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67899999999999999999999999999999999998755 7889999999999999999 899999999999999
Q ss_pred CCC-CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490 448 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 448 ~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 526 (1068)
.++ -++++.+.+|...|.+++|.|. |.++++++.|.+|+.|+++++-++.++.+|...+..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 6778888999999999999885 469999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC---------------CCEEEEEECCCeEEEEEcCCCeEEEE
Q 001490 527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 591 (1068)
Q Consensus 527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 591 (1068)
+.++++|-+.++++...++.|+ .+|.+++|.|. ++++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 6689999999999999999998 89999999773 25888999999999999999999999
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCC
Q 001490 592 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 671 (1068)
Q Consensus 592 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1068)
+.+|. ..|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.
T Consensus 330 L~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 99775 469999999999999999999999999999999999999999999999886
Q ss_pred CCcccceeecccccceeec
Q 001490 672 EDVKPEISVEAENKSEVEK 690 (1068)
Q Consensus 672 ~~~~~l~s~~~d~~i~~wd 690 (1068)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3445899999999999996
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.3e-33 Score=263.91 Aligned_cols=288 Identities=18% Similarity=0.298 Sum_probs=250.1
Q ss_pred eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490 367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446 (1068)
Q Consensus 367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 446 (1068)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .+++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 488999999999999999999999999999999986543 33346789999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490 447 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 447 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 526 (1068)
|+++|++++.+++|...|+++... ..+-.++.+++.||++++||++.......+.. ..+++++.|..++..+++++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc-
Confidence 999999999999999999999843 23446788999999999999998776665532 347899999999999999987
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEeCCCCCCC--
Q 001490 527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE-- 600 (1068)
Q Consensus 527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~-- 600 (1068)
++.|++||++.+....++.||. +.|+.+..+++|.++++-+.|.++++||++.. +++..+.++.+.-.
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred ---cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 4559999999999999999999 99999999999999999999999999999753 44666665544322
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceee
Q 001490 601 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 680 (1068)
Q Consensus 601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 680 (1068)
...++|+|++..+..|+.|..+++||......+..+.+|.+.|.++.|.| ....+.++
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~ 326 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSC 326 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEe
Confidence 35689999999999999999999999999999999999999999999975 45567778
Q ss_pred cccccceee
Q 001490 681 EAENKSEVE 689 (1068)
Q Consensus 681 ~~d~~i~~w 689 (1068)
+.|++|.+=
T Consensus 327 ~sdk~i~lg 335 (338)
T KOG0265|consen 327 SSDKTIYLG 335 (338)
T ss_pred ccCceeEee
Confidence 888777653
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=310.42 Aligned_cols=294 Identities=21% Similarity=0.350 Sum_probs=256.3
Q ss_pred eeecccC-CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCc--ceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 303 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 303 ~~~l~~h-~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
.+++.+| ...|.++.|||||+ .+++++.|+.+++|+..+++ .++. +.+|...|..++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 6666665 77999999999998 57999999999999997776 4332 578999999999
Q ss_pred ECCCCCEEEEEeCCcEEEEEEc-cCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001490 380 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 458 (1068)
Q Consensus 380 ~spdg~~las~~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 458 (1068)
|+|||+++++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+.+++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 9999999999999999999999 4434444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC--ceEEecCCCC--cEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490 459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 534 (1068)
Q Consensus 459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 534 (1068)
+|.+.|++++|.+ ++.+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.+.
T Consensus 286 ~hs~~is~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 9999999999965 77899999999999999999988 3445544444 5999999999999999986 66799
Q ss_pred EEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490 535 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614 (1068)
Q Consensus 535 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 614 (1068)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..++++|...+++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999998322245556667889999999999999999999999999998875 45688999999999999
Q ss_pred EEE--CCCeEEEEECC
Q 001490 615 VIA--NENRIKILETP 628 (1068)
Q Consensus 615 ~~~--~dg~i~iwd~~ 628 (1068)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=291.22 Aligned_cols=296 Identities=16% Similarity=0.251 Sum_probs=253.8
Q ss_pred CccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCC-CcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490 298 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 376 (1068)
Q Consensus 298 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 376 (1068)
+|...++++.||+..|+++.|.|-.-+||++|+.|+.|+||++.. ++++++ +.+|..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 588999999999999999999993335999999999999999976 777776 779999999
Q ss_pred EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490 377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 456 (1068)
Q Consensus 377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 456 (1068)
.++|+++|..+.+++.|+.|++||+++|+++.. + .....+.|+.|.||+.. .+++|+.|+.|+.||+++++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f-~~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---F-HLDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---E-ecCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999987652 2 12346899999999955 788899999999999999999999
Q ss_pred eccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE-ecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490 457 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 535 (1068)
Q Consensus 457 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 535 (1068)
+..|-+.|..+.|.+ +|..+++.++|+.+++|+.+....... .........++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 999999999999966 778999999999999999987665543 3334457788999999999998765 667888
Q ss_pred EeCCCC---eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec-CCC
Q 001490 536 WNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGT 611 (1068)
Q Consensus 536 wd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~ 611 (1068)
+.+... ...+.|.||.. .+.-..+.|+|||.+|++|+.||.+.+||.++-+++..+..+. ..+..+.|+| ...
T Consensus 412 fs~~~~~r~nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEPS 488 (503)
T ss_pred EecccccccCHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCcc
Confidence 876532 33456777762 2445678999999999999999999999999999999999874 4588999999 466
Q ss_pred EEEEEECCCeEEEEE
Q 001490 612 LLAVIANENRIKILE 626 (1068)
Q Consensus 612 ~l~~~~~dg~i~iwd 626 (1068)
.+|+++.||.|++|+
T Consensus 489 kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGWDGLIKIWD 503 (503)
T ss_pred eeEecccCceeEecC
Confidence 899999999999996
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.4e-34 Score=283.37 Aligned_cols=283 Identities=22% Similarity=0.323 Sum_probs=247.4
Q ss_pred CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 389 (1068)
Q Consensus 310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las 389 (1068)
+-.|..|.|.|+|++| ++|+..|.+.+|+..+- +|+ .++..|...|+++.||++|.++++
T Consensus 96 kc~V~~v~WtPeGRRL-ltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRL-LTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred ccceeeEEEcCCCcee-EeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCEEEE
Confidence 3489999999999965 88999999999997432 111 126689999999999999999999
Q ss_pred EeCCcEEEEEEccCCCcccceEEEcc-ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001490 390 AYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 468 (1068)
Q Consensus 390 ~~~d~~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 468 (1068)
|+.+|.|++|+..-... + .+.. |...|.+++|||+.. .++++++|++|+|||....+....+.||.-.|.++.
T Consensus 156 gD~gG~iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 156 GDKGGMIKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred cCCCceEEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 99999999999876542 2 2334 458999999999888 799999999999999999988889999999999999
Q ss_pred eeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe
Q 001490 469 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 548 (1068)
Q Consensus 469 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 548 (1068)
|+|.. .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.+.+++
T Consensus 230 WHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 230 WHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYR 303 (464)
T ss_pred cCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhh
Confidence 99965 49999999999999999999999999999999999999999999999986 6679999999999999999
Q ss_pred ccccccCCeEEEEEecCCC-EEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490 549 GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 627 (1068)
Q Consensus 549 ~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 627 (1068)
+|. ..+.++.|+|-.. .+.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.-
T Consensus 304 ~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 304 GHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeecc
Confidence 998 9999999999755 455589999999999986666666643 33457999999999999999999999999975
Q ss_pred C
Q 001490 628 P 628 (1068)
Q Consensus 628 ~ 628 (1068)
.
T Consensus 380 ~ 380 (464)
T KOG0284|consen 380 N 380 (464)
T ss_pred C
Confidence 4
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=267.98 Aligned_cols=294 Identities=14% Similarity=0.233 Sum_probs=258.4
Q ss_pred eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490 367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446 (1068)
Q Consensus 367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 446 (1068)
++.+|.+.|.|+++.|...++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 377999999999999999999999999999999999997544 7889999999999999888 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490 447 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 447 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 526 (1068)
|++..+.++.+.||-..|.+++.+|.- ..|++++.|.++++||+++...+..+.+|..+|.++.+.|-...+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999999865 49999999999999999999999999999999999999998888999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490 527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 606 (1068)
Q Consensus 527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 606 (1068)
|.+|++||+..|+...++..|. ..+.+++.+|....+++++.|. |+-|++..|..++.+.++. ..+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~--~iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN--AIINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc--ceeeeeee
Confidence 7789999999999999998887 8999999999998888888765 8999999999999987664 45888998
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccc
Q 001490 607 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 686 (1068)
Q Consensus 607 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 686 (1068)
+.|+ ++++|+++|.+.+||.+++..++.......+ | +
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------G------S----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------G------S----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------C------c-----
Confidence 8877 7889999999999999988655544211000 0 0
Q ss_pred eeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEecc
Q 001490 687 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 740 (1068)
Q Consensus 687 ~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 740 (1068)
......|.+.+|...|.+|+++..|.+|++|.-+
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0134568889999999999999999999999744
No 51
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.1e-29 Score=263.09 Aligned_cols=552 Identities=16% Similarity=0.158 Sum_probs=378.2
Q ss_pred ecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCC-CcceEEEEECCC
Q 001490 305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPD 383 (1068)
Q Consensus 305 ~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~spd 383 (1068)
...-...+|.++|||.+.+ .||.+-.||.|.||++..+-... ..+.++ ...|.+++|++
T Consensus 20 f~d~~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~e- 79 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWAE- 79 (691)
T ss_pred EEeeeccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEcc-
Confidence 3344456999999999998 57999999999999998754332 224444 46899999995
Q ss_pred CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee--EeccCC
Q 001490 384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHG 461 (1068)
Q Consensus 384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~ 461 (1068)
|..|.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+...+...+ .|....
T Consensus 80 ~~RLFS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~ 154 (691)
T KOG2048|consen 80 GGRLFSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQK 154 (691)
T ss_pred CCeEEeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeeccccc
Confidence 5566777899999999999987555 6667788999999999998 78899999988888877776653 445567
Q ss_pred CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec-----C---CCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490 462 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----A---PGLGCTRMAYSANGRRLFSCGTSKEGESFL 533 (1068)
Q Consensus 462 ~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 533 (1068)
+.|.++.|++ ++..+++|+.||.|++||...+....... . ...-|.++.|-.++ .|++|- ..|+|
T Consensus 155 sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V 227 (691)
T KOG2048|consen 155 SRVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTV 227 (691)
T ss_pred ceEEEEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceE
Confidence 8899998865 77789999999999999999888766221 1 12246777777555 455553 36789
Q ss_pred EEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeE--EEEEeCCCCCCCCceEEEecCCC
Q 001490 534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGT 611 (1068)
Q Consensus 534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~ 611 (1068)
.+||...+.+++.+..|. ..|.+++..++++++++++.|+.|.-+...++.. +.......+...+.+++..++
T Consensus 228 ~FWd~~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 228 TFWDSIFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred EEEcccCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence 999999999999998888 9999999999999999999999999998876643 222222233456899999877
Q ss_pred EEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecc
Q 001490 612 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 691 (1068)
Q Consensus 612 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 691 (1068)
.+++|+.|.++.+-....-+.. .|... ...|..... . ....+++..--....+.+|.+
T Consensus 303 ~l~sgG~d~~l~i~~s~~~~~~----~h~~~----~~~p~~~~v---------~-----~a~~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSREFKNM----DHRQK----NLFPASDRV---------S-----VAPENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred eEEecceeeEEEEccccccCch----hhhcc----cccccccee---------e-----cCccceEEEEeccccccceec
Confidence 8999999999888665542111 11100 000100000 0 011223333334455666665
Q ss_pred cccCC------cccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCC
Q 001490 692 LFARP------SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 765 (1068)
Q Consensus 692 ~~~~~------~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1068)
..... .....+..+ ....|.+.+.||+|++++.+.-. .++||.++.... +++-....
T Consensus 361 GS~~~~g~~~~~~Llkl~~k---~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~-----------vk~~~v~~-- 423 (691)
T KOG2048|consen 361 GSVILQGEYNYIHLLKLFTK---EKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPN-----------VKVINVDD-- 423 (691)
T ss_pred cCcccccccChhhheeeecC---CccceeeeccCCCCCEEEEeecc-ceEEEEeccCcc-----------eeEEEecc--
Confidence 54311 112222222 35578999999999977666544 677887754321 00000000
Q ss_pred ceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEccCcee--EEEec--CCCCCeEEEEEeCCCCCEEEEEE
Q 001490 766 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT--ILTIM--PPSPTATSLAFNPHDNNVIAIGM 839 (1068)
Q Consensus 766 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~--~~~~~--~~~~~i~~l~~s~~d~~~lasg~ 839 (1068)
.+ ...-....+.|+-|+..++..+ ...+.+++.++... +..+. .....|+.++.|| +|++||+.+
T Consensus 424 ------~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~ 494 (691)
T KOG2048|consen 424 ------VP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAIS 494 (691)
T ss_pred ------ch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEe
Confidence 00 1234567888999988887777 47788888875433 22222 2456899999999 999999999
Q ss_pred CCCeEEEEEcCCceeeeeecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeec---CCCcccCCCCc
Q 001490 840 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT---PDGVMTLAPSE 915 (1068)
Q Consensus 840 ~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~v 915 (1068)
.+|.|.+|++++++.......-...|++++|+| +.+.|+.+..|+.+.-+|++............ +.........+
T Consensus 495 t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~ 574 (691)
T KOG2048|consen 495 TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGI 574 (691)
T ss_pred ccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCC
Confidence 999999999998875444434457899999995 66889999999999999995433222211111 11111122467
Q ss_pred eEEEEeeCCCEEEEE-eCCeEEEEECC
Q 001490 916 THIQFHKDQTRFLLV-HETHLAIYEAE 941 (1068)
Q Consensus 916 ~~~~~spdg~~la~~-~d~~i~vwd~~ 941 (1068)
..+.|+|........ ..+-+.+.|..
T Consensus 575 ~gisfd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 575 PGISFDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred ceEEeCCCCccEEEEEcCcEEEEEecC
Confidence 888888777655553 33445555543
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.9e-31 Score=246.74 Aligned_cols=293 Identities=16% Similarity=0.240 Sum_probs=236.4
Q ss_pred ccccccEEEEEEecC-CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEE
Q 001490 707 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 785 (1068)
Q Consensus 707 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 785 (1068)
.+|.+++..++|+|. |..|++++.|..|++|+..... -| ........+|...|+.+|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~--------~ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SW--------TCKTVLDDGHKRSVRSVA 68 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cE--------EEEEeccccchheeeeee
Confidence 458889999999999 8899999999999999865310 01 111111125999999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEcc--CceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc---eeeeeec
Q 001490 786 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE 859 (1068)
Q Consensus 786 ~s~dg~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~~~ 859 (1068)
++|.|++||+++ |.++.||.-. +.+++.++.+|..+|.|++||+ +|++||+++.|+.|-||.+..+ ++...++
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999 9999999876 4578899999999999999999 9999999999999999999854 5788999
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEE
Q 001490 860 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY 938 (1068)
Q Consensus 860 ~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vw 938 (1068)
+|...|..+.|+|...+|+++|.|.+|++|+-..+ ....+.+.+.+|.. .|.+++|.+.|..|++ +.|++++||
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence 99999999999999999999999999999988732 13567888888876 7999999999999988 678999999
Q ss_pred ECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCC
Q 001490 939 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1018 (1068)
Q Consensus 939 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1018 (1068)
..-+ .+..-|.+.+..+.|. ...|++++.|+.|+++.-...-.-..+. ......+.|+..+ -++.|.|..
T Consensus 223 ~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-l~~~~~~aHe~dV--NsV~w~p~~ 292 (312)
T KOG0645|consen 223 RLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-LLAKKEGAHEVDV--NSVQWNPKV 292 (312)
T ss_pred eecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-HHHhhhccccccc--ceEEEcCCC
Confidence 9652 2344578899999998 4479999999999999877531111111 1111222344444 478999955
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001490 1019 PTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 1019 ~~~l~~~~~dg~i~~w~~~ 1037 (1068)
.+.|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999874
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-32 Score=295.40 Aligned_cols=266 Identities=14% Similarity=0.190 Sum_probs=232.0
Q ss_pred ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCC---------ccceeccCCcccCCCCCCceeeecCCCCCCCC
Q 001490 709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS---------TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 779 (1068)
Q Consensus 709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1068)
....+.+..|++|+..++.|-.|..|++|.+...++... ....+.....+.|...+..... + .+|.+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L--~GH~G 452 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--L--YGHSG 452 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--e--ecCCC
Confidence 445789999999999999999999999999986443211 1112222344555555543332 2 25999
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee
Q 001490 780 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 858 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~ 858 (1068)
+|....|+|+.++|++++ |+++|+|.+.+..++..+++|..+|..+.|+| -|.++|+++.|++-++|......+++.+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999999999999 69999999999999999999999999999999 8999999999999999999999999999
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEE
Q 001490 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI 937 (1068)
Q Consensus 859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~v 937 (1068)
.+|-+.|.|+.|+|+..|+++||.|.+|++||+.+|. .++.+.||.. +|.+++|||+|++||+ +.|+.|.+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence 9999999999999999999999999999999999966 5777788887 9999999999999999 68899999
Q ss_pred EECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE
Q 001490 938 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 988 (1068)
Q Consensus 938 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~ 988 (1068)
||+.+|..+.. +.+|.+.|.++.||.||..||+|+.|.+|++||+..-..
T Consensus 604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 99999999987 557899999999999999999999999999999986533
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.4e-31 Score=284.23 Aligned_cols=288 Identities=25% Similarity=0.410 Sum_probs=254.7
Q ss_pred eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490 303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 382 (1068)
Q Consensus 303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp 382 (1068)
.+++++|.+.|.+++|+|+++ ++++++.||.|++|++.+++.... +..|...+..+.|+|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~ 61 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASA 61 (289)
T ss_pred chHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECC
Confidence 356789999999999999997 678888899999999998875543 557888999999999
Q ss_pred CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001490 383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 462 (1068)
Q Consensus 383 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 462 (1068)
++++|++++.++.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|.+||+.+++....+..|..
T Consensus 62 ~~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 136 (289)
T cd00200 62 DGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136 (289)
T ss_pred CCCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCC
Confidence 99999999999999999999875444 5668888999999999987 788888899999999999999999999999
Q ss_pred cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490 463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 542 (1068)
Q Consensus 463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 542 (1068)
.+.++++++. +.++++++.++.|++||+...+....+..+...+.+++|+|+++.+++++. ++.+.+||+.+++
T Consensus 137 ~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~ 210 (289)
T cd00200 137 WVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGK 210 (289)
T ss_pred cEEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCc
Confidence 9999999774 568888888999999999988888888888889999999999999998875 5679999999998
Q ss_pred eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001490 543 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 622 (1068)
Q Consensus 543 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 622 (1068)
.+..+..+. ..+.++.|+|++.++++++.+|.|++||+.+++....+..+ ...+.+++|+|+++++++++.|+.+
T Consensus 211 ~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 211 CLGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred eecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeE
Confidence 888887776 78999999999888888888999999999999888888754 3468999999999999999999999
Q ss_pred EEEE
Q 001490 623 KILE 626 (1068)
Q Consensus 623 ~iwd 626 (1068)
++|+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9996
No 55
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=271.12 Aligned_cols=285 Identities=18% Similarity=0.265 Sum_probs=242.9
Q ss_pred ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490 709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 788 (1068)
Q Consensus 709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 788 (1068)
....|..+.|.|+|++|++++..|.+.+|+...- .++.-..+|...|+++.+|+
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--------------------------nFEtilQaHDs~Vr~m~ws~ 148 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--------------------------NFETILQAHDSPVRTMKWSH 148 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee--------------------------eHHHHhhhhcccceeEEEcc
Confidence 3457899999999999999999999999985321 11111225999999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEecCCC-CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeE
Q 001490 789 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866 (1068)
Q Consensus 789 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 866 (1068)
+|.++++|+ +|.|++|+..- ..+..+..|. ..|++++||| +...++++++||+|+|||....+....+.||.-.|.
T Consensus 149 ~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred CCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 999999999 68999999874 3444555554 8999999999 777889999999999999999998899999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCcee
Q 001490 867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC 945 (1068)
Q Consensus 867 ~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~ 945 (1068)
+++|+|...++|++|.|..|++||.+++. ++..+.+|.. .|..+.|+|++.+|++ +.|..++++|+++.+.
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 99999999999999999999999999965 7777777776 8999999999999999 7899999999998877
Q ss_pred eeeeccCCCcCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001490 946 LKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1024 (1068)
Q Consensus 946 ~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 1024 (1068)
+.. +.+|...|++++|+| ...++.+|+.||.|..|.+...+.+..+. ..|...|+ +++|+| =|.+|++
T Consensus 299 l~~-~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-------~AHd~~iw--sl~~hP-lGhil~t 367 (464)
T KOG0284|consen 299 LFT-YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-------PAHDGEIW--SLAYHP-LGHILAT 367 (464)
T ss_pred HHH-hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC-------ccccccee--eeeccc-cceeEee
Confidence 776 678999999999999 55789999999999999999666663333 23566666 679999 5899999
Q ss_pred EeCCCcEEEEeCCCCC
Q 001490 1025 GLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus 1025 ~~~dg~i~~w~~~~~~ 1040 (1068)
|+.|.++++|.-+..+
T Consensus 368 gsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCcceeeeccCCCC
Confidence 9999999999876655
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=266.55 Aligned_cols=276 Identities=21% Similarity=0.305 Sum_probs=234.1
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEE
Q 001490 309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 388 (1068)
Q Consensus 309 h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~la 388 (1068)
..+.|.|+.+..+ .+++|..|.+|+|||.++-++++. +.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence 4568999999643 359999999999999999888865 88999999999985 56999
Q ss_pred EEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee---eEeccCCCcEE
Q 001490 389 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPVY 465 (1068)
Q Consensus 389 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~ 465 (1068)
+|+.|.+|+|||+++|++++ ++-+|...|..+.|+.. ++++++.|.+|.+||+.....+ +.+.||.+.|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 66789999999999853 7999999999999999876543 56789999999
Q ss_pred EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001490 466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 545 (1068)
Q Consensus 466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 545 (1068)
.+.| +.+++++++.|.+|++|+..+...+..+.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 5569999999999999999999999999999999988775 5788888876 7789999999999999
Q ss_pred EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE-------eCCCCCCCCceEEEecCCCEEEEEEC
Q 001490 546 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN 618 (1068)
Q Consensus 546 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~ 618 (1068)
.++||+ .-|.++.|. .+.+++|+.||+|++||+.++..-... ..-.+...|..+.| |...+++++.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH 467 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC
Confidence 999999 899999995 578999999999999999876432111 11122334566666 4668899999
Q ss_pred CCeEEEEECCCCce
Q 001490 619 ENRIKILETPESNS 632 (1068)
Q Consensus 619 dg~i~iwd~~~~~~ 632 (1068)
|.+|.|||..++..
T Consensus 468 ddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 468 DDTILIWDFLNGPP 481 (499)
T ss_pred CCeEEEEEcCCCCc
Confidence 99999999987643
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-30 Score=295.07 Aligned_cols=291 Identities=21% Similarity=0.304 Sum_probs=255.3
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEEC-
Q 001490 370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 448 (1068)
Q Consensus 370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~- 448 (1068)
.+...|.++.||+||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3478999999999999999999999999999977662 22235679999999999999999 8999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490 449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 528 (1068)
Q Consensus 449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 528 (1068)
..+..++++++|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|++++++|++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999987 5589999999999999999999999999999999999999999999999865
Q ss_pred CceeEEEEeCCCCe--eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCC-CCCceEE
Q 001490 529 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 605 (1068)
Q Consensus 529 ~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 605 (1068)
++.|++||+.++. +...+.++.... .+.++.|+|++.++++++.|+.+++||+..+........+... ..+.+..
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 7789999999999 567888877333 6999999999999999999999999999999999988877653 1334455
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCceeeecccc-ccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeec--c
Q 001490 606 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 682 (1068)
Q Consensus 606 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~ 682 (1068)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..++++ +...++++++ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence 6789999999999999999999999999999999 7777777775 5566777777 6
Q ss_pred cccceeeccc
Q 001490 683 ENKSEVEKPL 692 (1068)
Q Consensus 683 d~~i~~wd~~ 692 (1068)
|+.+++|...
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 8889999754
No 58
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=1.3e-29 Score=263.87 Aligned_cols=698 Identities=16% Similarity=0.141 Sum_probs=373.1
Q ss_pred ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
.-+-.|.+|.+.|+.+.|||-...|||+||.|..|+||.+..|-...- ......+.+..-.|.++.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 345678899999999999997777999999999999999985432210 0112224445568889999
Q ss_pred CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC-CceeeEecc
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG 459 (1068)
Q Consensus 381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~ 459 (1068)
+|...-|...+..|+++|||+.+++.+. .+.+|.+.|.++.|+.||+ +|++.+.|+.|+|||.+. ++.++..++
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9987666666688999999999987554 7889999999999999999 999999999999999874 677888888
Q ss_pred CCCcEEEEeeeecCCccEEEEEEcC----CcEEEEeCCCCCce-EEecC-CCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490 460 HGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFL 533 (1068)
Q Consensus 460 h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 533 (1068)
|.+. ..-.+.+-++-..|++.+.+ ..|++||.+..... ..+.. ....|.---|.||.++|+.++ .|+..+
T Consensus 212 H~~~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l 287 (1012)
T KOG1445|consen 212 HGGM-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKL 287 (1012)
T ss_pred cccc-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceE
Confidence 8765 33222233344466666544 46899998765542 22222 222555667899999988876 357788
Q ss_pred EEEeCCCCeeee--EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceE-EEe---
Q 001490 534 VEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN--- 607 (1068)
Q Consensus 534 ~~wd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s--- 607 (1068)
+.+.+....... .++..- .......+.-|....-+..++ ..+++.+.....+-.. .+ .+ -.+. .|+
T Consensus 288 ~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~-y~--VP-RksyrdFH~DL 359 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIP-YI--VP-RKSYRDFHSDL 359 (1012)
T ss_pred EEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecc-cc--cc-hhhhhhhhhhh
Confidence 888876554321 111100 011122333333221111111 1123333222211110 00 00 0000 111
Q ss_pred -cCCCEEEEEECCCeEEEEECCCCceeeec------cccccc----ee--ee----EEcCCccccc-cccccCeeeecCC
Q 001490 608 -KNGTLLAVIANENRIKILETPESNSVDAA------GVLSDN----LR--KL----SVNPISTVTG-AGIANGSVSVNED 669 (1068)
Q Consensus 608 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~----i~--~~----~~~~~~~~~~-~~~~~~~~~~~~~ 669 (1068)
|+..-...+...| -|=..+++.++.+ +.|... +. .+ +|.+.....+ -++... ..-.++
T Consensus 360 fPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n-~~~~~~ 435 (1012)
T KOG1445|consen 360 FPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSN-NNSSSN 435 (1012)
T ss_pred CccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccc-cccccc
Confidence 1111001111111 1111111111111 111000 00 00 0000000000 000000 000000
Q ss_pred CCCCcccceeecccccceeecccccCCcccceeecC----CccccccEEEEEEecCCceEEEee----cC--ccEEEE--
Q 001490 670 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP----SKVKANKISRLTYNNGGQAIFALA----SN--GVHLMW-- 737 (1068)
Q Consensus 670 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----~~~~~~~i~~l~~s~~g~~l~~~~----~d--g~i~iw-- 737 (1068)
.-||-..--+......+|-.+....+.......... ..+...++..+ +|....++--. .+ .+..+.
T Consensus 436 ~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P 513 (1012)
T KOG1445|consen 436 NVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGP 513 (1012)
T ss_pred CCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCc
Confidence 012210000000111111111110000000000000 00000111000 00000000000 00 000000
Q ss_pred ----eccCCccCCCcc---cee--------------ccCCcccCCCCCCceee----ecCCCCCCCCCeeEEEEecCCCE
Q 001490 738 ----RWPRNDLTLSTE---ATT--------------KVPPRLYQPRHGPQFMV----NDTTDSNSQEAVPCFALSKNDAY 792 (1068)
Q Consensus 738 ----~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~l~~s~dg~~ 792 (1068)
.++......-|. .+. -+.+.-|.-..|..... ..+...+..-+-.+--|..+.++
T Consensus 514 ~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~r 593 (1012)
T KOG1445|consen 514 AFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKR 593 (1012)
T ss_pred cccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccce
Confidence 000000000000 000 00001111111110000 00000001111122335556677
Q ss_pred EEEE---eCCeEEEEEccCc-eeEEE-ecC--CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc-------eeeeee
Q 001490 793 LFSA---SGGVISLYIVMTF-KTILT-IMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVISKL 858 (1068)
Q Consensus 793 l~~~---~dg~i~iwd~~~~-~~~~~-~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~~~~ 858 (1068)
+|+- +.|.|.||++... +.... +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ .+...+
T Consensus 594 vAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 594 VAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred EEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence 7754 3689999999743 22211 111 34579999999999999999999999999999764 345678
Q ss_pred cccccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEE
Q 001490 859 EGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 936 (1068)
Q Consensus 859 ~~h~~~V~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~ 936 (1068)
.+|...|+++.|+|= ...|++++.|.+|++||+.++. ....+.+|.. .|..++|||||+++|+ +.|++++
T Consensus 674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCceEE
Confidence 899999999999994 4789999999999999999855 3444566765 8999999999999999 8999999
Q ss_pred EEECCCceeeeeeccC-CCcCEEEEEEecCCCEEEEEECCC----cEEEEEcCCCcEEEEeccccccCCCCccCcccceE
Q 001490 937 IYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1011 (1068)
Q Consensus 937 vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1068)
||+.++++....--.+ -..+-..+.|.-||+++++.+-|. .|.+||..+.....-..... ...-.++.
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l-------Dvaps~Lv 818 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL-------DVAPSPLV 818 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee-------cccCcccc
Confidence 9999987654321211 234556788999999999888774 48888877654221111000 00111222
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccCCCC
Q 001490 1012 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1049 (1068)
Q Consensus 1012 ~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 1049 (1068)
-.+++|.+-+|++|-.|..|++|++..+.|..-.+.+.
T Consensus 819 P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f 856 (1012)
T KOG1445|consen 819 PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF 856 (1012)
T ss_pred ccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence 34666667889999999999999999998776655553
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.4e-31 Score=271.97 Aligned_cols=290 Identities=15% Similarity=0.192 Sum_probs=253.7
Q ss_pred eecCCCcceEEEEECC-CCCEEEEEeCCcEEEEEEccC-CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEE
Q 001490 367 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 444 (1068)
Q Consensus 367 ~l~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 444 (1068)
.+.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .+++++.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 3789999999999999 899999999999999999987 55555 7889999999999999999 799999999999
Q ss_pred EEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490 445 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 524 (1068)
Q Consensus 445 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 524 (1068)
+||+++|+++.++. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999986 56678899999875 47999999999999999999999999999999999999999999999998
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCe---EEEEEeCCCCCCCC
Q 001490 525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN 601 (1068)
Q Consensus 525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v 601 (1068)
. +..+++|+...+..++....+. .....++..+|+++++++-+.|+.|.++.+...- ....+.+|.....-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 5579999999887776655444 3567789999999999999999999999875432 22344555444445
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeec
Q 001490 602 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 681 (1068)
Q Consensus 602 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 681 (1068)
..+.|||||++|++|..||.+.+||..+.+.+..++.|.+.+..+.|.|. ....+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEecc
Confidence 67999999999999999999999999999999999999999999999874 345689999
Q ss_pred ccccceeec
Q 001490 682 AENKSEVEK 690 (1068)
Q Consensus 682 ~d~~i~~wd 690 (1068)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=8.3e-30 Score=243.53 Aligned_cols=314 Identities=17% Similarity=0.212 Sum_probs=244.7
Q ss_pred eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCccee-eeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
-...|..|+.++.+.+|||||. |+|+|+.|.+|+|.|++.--... ...+..-+.....+.++ .+-.|.+.|+++.|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l~F 180 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDLDF 180 (430)
T ss_pred ceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccceee
Confidence 3456789999999999999997 89999999999999997210000 00000001111112222 26789999999999
Q ss_pred CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe---
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 457 (1068)
Q Consensus 381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 457 (1068)
+|....|++|+.|++|+++|...-...+....+ ....+|.++.|+|.|. +|+.|....++++||+.+-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence 999999999999999999999765433333233 3456899999999999 8999999999999999998875433
Q ss_pred ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecC-CC-CcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490 458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PG-LGCTRMAYSANGRRLFSCGTSKEGESFLVE 535 (1068)
Q Consensus 458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 535 (1068)
.+|.+.|+++.+++ .+.+.++++.||.|++||--+.+++..+.. |+ ..|.+..|+.+|+++++.+. |..+++
T Consensus 258 ~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkL 331 (430)
T KOG0640|consen 258 DQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKL 331 (430)
T ss_pred cccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeee
Confidence 46999999999865 778999999999999999888888776643 33 37999999999999999875 778999
Q ss_pred EeCCCCeeeeEEecccccc--CCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCE
Q 001490 536 WNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612 (1068)
Q Consensus 536 wd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 612 (1068)
|.+.+++.+..+.|..... ..-+...|+..+.+++.-. ..+.+.-||.+++..+..+.. ++...+..+.-||.+.-
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPA 410 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCc
Confidence 9999999999998753111 1223456777778887744 467899999999888777664 34467899999999999
Q ss_pred EEEEECCCeEEEEECC
Q 001490 613 LAVIANENRIKILETP 628 (1068)
Q Consensus 613 l~~~~~dg~i~iwd~~ 628 (1068)
+++++.|...++|--.
T Consensus 411 FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYRR 426 (430)
T ss_pred eeeecccceeeeeeec
Confidence 9999999999999643
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7e-31 Score=243.44 Aligned_cols=291 Identities=16% Similarity=0.220 Sum_probs=255.5
Q ss_pred eecccCCCCceEEEEcC---CCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 304 QTLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 304 ~~l~~h~~~V~~v~~sp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
.+-+||+.+|..++||| +| ++|++++.|+.-.+-+-++|.-+.+ +.||.+.|+...+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 34479999999999984 77 6999999999999999999988876 7899999999999
Q ss_pred CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc-eeeEecc
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG 459 (1068)
Q Consensus 381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~ 459 (1068)
..+..+-|+++.|-+.+|||.-+|..+.. + .|..-|.+++|+.|.+ +|++|+.++.++|+|++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 99999999999999999999999987663 3 6889999999999999 79999999999999998754 4578899
Q ss_pred CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001490 460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 539 (1068)
Q Consensus 460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~ 539 (1068)
|.+.|..+.|... .+.+++.+.|++||+||.+++.....+... .+|+++.+++||++|.++.. +.|..||..
T Consensus 142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYG-----SSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecC-----ceeEEeccc
Confidence 9999999998763 468888899999999999999988877644 48999999999999988763 359999999
Q ss_pred CCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490 540 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 619 (1068)
Q Consensus 540 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 619 (1068)
+-..++.+.-.. .|.+...+|+...+++|++|..++.||..++..+..+. .++..+|.++.|+|+|...++|+.|
T Consensus 214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCC
Confidence 999988887654 79999999999999999999999999999999998862 2345679999999999999999999
Q ss_pred CeEEEEECCCCcee
Q 001490 620 NRIKILETPESNSV 633 (1068)
Q Consensus 620 g~i~iwd~~~~~~~ 633 (1068)
|+|++|.+..++..
T Consensus 289 GTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 289 GTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEEecCCCch
Confidence 99999998766443
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.9e-30 Score=236.54 Aligned_cols=268 Identities=20% Similarity=0.313 Sum_probs=237.1
Q ss_pred eeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490 366 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 445 (1068)
Q Consensus 366 ~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 445 (1068)
.++..|.++|.++.|+-||+|.++|+.|++|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3477899999999999999999999999999999999998777 7889999999999999998 6999999999999
Q ss_pred EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC--ceEEecCCCCcEEEEEEccCCCEEEEE
Q 001490 446 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSC 523 (1068)
Q Consensus 446 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~ 523 (1068)
||+.+|+.++.+.+|.+.|+.+.|+. +...+++|+.|..+++||-++.. +++.+......|.++..+ +..+++|
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 99999999999999999999999954 66799999999999999987654 455666666677777664 5677777
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490 524 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 603 (1068)
Q Consensus 524 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 603 (1068)
+. |++++.||++.|+....+-+ .+|+++.|+++++..++++-|+++++.|-.+|+++....+|.....-..
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 75 77899999999998777776 4599999999999999999999999999999999999998877665567
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccc-eeeeEEcCC
Q 001490 604 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPI 651 (1068)
Q Consensus 604 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~ 651 (1068)
++++....++++|++||.+++||+.+...+..+..+... +..+++.|.
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 888888899999999999999999999999888887777 777888764
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.9e-31 Score=258.39 Aligned_cols=275 Identities=16% Similarity=0.259 Sum_probs=234.1
Q ss_pred CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC
Q 001490 371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 450 (1068)
Q Consensus 371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 450 (1068)
....|.|+.+ |...+++|..|++|+|||.++-.+.+ .+.||++.|.|+.|. .+ ++++|+.|.+|++||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3468999988 46678999999999999999977666 678999999999984 45 899999999999999999
Q ss_pred CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc---eEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490 451 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 451 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 527 (1068)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+..... ...+.+|...|+.+.|+. ++++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 999999999999999999852 4999999999999999987664 336678888898888754 59998875
Q ss_pred CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490 528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 607 (1068)
Q Consensus 528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 607 (1068)
|.+|++|++.+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 7789999999999999999998 77888776 578999999999999999999999999998765 48899986
Q ss_pred cCCCEEEEEECCCeEEEEECCCCc---------eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccce
Q 001490 608 KNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 678 (1068)
Q Consensus 608 ~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 678 (1068)
.+.+++|+.||+|++||+..+. ++..+..|.+.|..+.|. ...++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv 463 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII 463 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence 6789999999999999998663 234455667777666664 66789
Q ss_pred eecccccceeecccccCCc
Q 001490 679 SVEAENKSEVEKPLFARPS 697 (1068)
Q Consensus 679 s~~~d~~i~~wd~~~~~~~ 697 (1068)
+++.|.+|.+||+....+.
T Consensus 464 sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccCCCeEEEEEcCCCCcc
Confidence 9999999999998755444
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.4e-29 Score=304.93 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=238.3
Q ss_pred cccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-CC
Q 001490 306 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 384 (1068)
Q Consensus 306 l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-dg 384 (1068)
+..|.+.|.+++|+|+|+ ++|+|+.|+.|+|||+.+...... . .......+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence 456899999999999998 779999999999999864211000 0 000001122 346899999987 47
Q ss_pred CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC-CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490 385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 463 (1068)
Q Consensus 385 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 463 (1068)
.+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999876544 6789999999999997 677 8999999999999999999998888754 67
Q ss_pred EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC-ceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-
Q 001490 464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 541 (1068)
Q Consensus 464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~- 541 (1068)
|.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888854 367899999999999999998765 455677888899999997 7888988875 667999999743
Q ss_pred -----eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeC-----------CCCCCCCceEE
Q 001490 542 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 605 (1068)
Q Consensus 542 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 605 (1068)
..+..+.+|. ..+..+.|++++.+|++|+.|+.|++|+......+..+.. ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677888887 8899999999999999999999999999876654433221 12234589999
Q ss_pred EecCCCEEEEEECCCeEEEEEC
Q 001490 606 FNKNGTLLAVIANENRIKILET 627 (1068)
Q Consensus 606 ~s~~~~~l~~~~~dg~i~iwd~ 627 (1068)
|+|++..|++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.4e-28 Score=266.86 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=253.4
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
+.+|..+|.+++|+|++++|++++.+|.|.+|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876433 5678999999999999998 799999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 527 (1068)
+.+++.+..+..|...+.++.|++. +.++++++.+|.|++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998888999999999999999764 568888888999999999988888888888889999999999998888763
Q ss_pred CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490 528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 607 (1068)
Q Consensus 528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 607 (1068)
++.|++||+.+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+. ..+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence 5579999999998888888776 789999999999999999999999999999988888875443 368999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccce
Q 001490 608 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 687 (1068)
Q Consensus 608 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 687 (1068)
|++.++++++.++.+++|+..++.....+..+...+.++.++ ++++.+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999988888888888888888886 6688899999999999
Q ss_pred eec
Q 001490 688 VEK 690 (1068)
Q Consensus 688 ~wd 690 (1068)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=248.93 Aligned_cols=290 Identities=17% Similarity=0.226 Sum_probs=239.8
Q ss_pred ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490 709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 788 (1068)
Q Consensus 709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 788 (1068)
....+.+..|||||+++++++-||.+.+|++...+...+-+..+. .. ++ -+...|.|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~--fM-------Mmd~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN--FM-------MMDDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc--ee-------ecccceEEEeecc
Confidence 455678899999999999999999999999877655333332221 11 11 1678999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEec-CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeE
Q 001490 789 NDAYLFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866 (1068)
Q Consensus 789 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 866 (1068)
|...+|+|+ ||.|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|--+++|++++.++||+.-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 8999999999999999998 7999999999999 888999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC--CEEEEEeCCeEEEEECCCce
Q 001490 867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLAIYEAEELT 944 (1068)
Q Consensus 867 ~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~d~~i~vwd~~~~~ 944 (1068)
...|++||.++++++.||+|++|+.++.+ |+.++.... ...+|.++..-|.+ .++++...++++|.++. |+
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ 425 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ 425 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchh-----hhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence 99999999999999999999999999966 443332211 12357777777764 34445677889999984 77
Q ss_pred eeeeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEE
Q 001490 945 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1022 (1068)
Q Consensus 945 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1022 (1068)
.++.+..|. .+..-+.+.||.|.++.+.+.|+.++-+.+.+|.+...+..+. -.++.++-+| +.+.+
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHP-HqNll 494 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHP-HQNLL 494 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCc-ccchh
Confidence 777765554 5667788899999999999999999999999999987777332 2344688899 78999
Q ss_pred EEEeCCCcEEEEe
Q 001490 1023 AVGLTNGEVYVIE 1035 (1068)
Q Consensus 1023 ~~~~~dg~i~~w~ 1035 (1068)
++-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999996
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=9.4e-29 Score=231.35 Aligned_cols=279 Identities=17% Similarity=0.239 Sum_probs=242.8
Q ss_pred eecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-
Q 001490 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 382 (1068)
Q Consensus 304 ~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp- 382 (1068)
+.+.+|...|..|+|+.||. -||+|+.|+++.+|+++..+.+.... ..+|.+.|..++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELV-----------------YRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhc-----------------ccCCCcchhhheeCCC
Confidence 66789999999999999998 56999999999999999886554322 678999999999998
Q ss_pred CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001490 383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 462 (1068)
Q Consensus 383 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 462 (1068)
....+++++.|.+|++||+..+++... .....+. ..+.|+|+|+ +++.++.|..|.+.|.++.+.....+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~---i~~~~en-i~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTAR---IETKGEN-INITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEE---eeccCcc-eEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 578899999999999999999987653 3223333 4589999999 79999999999999999888776554 455
Q ss_pred cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490 463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 542 (1068)
Q Consensus 463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 542 (1068)
.+..++|+. ++.+++.....|.|.|..+...+.+..+..|...+.|+.|+|+|+++++|+. |..+.+||+..--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788874 4457777777899999999999999999999999999999999999999987 6679999999999
Q ss_pred eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490 543 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 619 (1068)
Q Consensus 543 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 619 (1068)
+++.+..+. .+|+.+.|+.+|++|++||+|..|-|=++++|..+..++..+. ...|+|+|...+||.+++|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 9999999999999999999999999999999999999987754 5899999999999988775
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.8e-29 Score=255.03 Aligned_cols=285 Identities=19% Similarity=0.232 Sum_probs=243.2
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~ 386 (1068)
+.|. .|.+++|||...+=+|+.+. -.|.||+..+...++. +......|.++.|-.||++
T Consensus 24 ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 24 KEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRL 82 (487)
T ss_pred cccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeE
Confidence 4554 99999999966654455443 6899999988776653 3335578999999999999
Q ss_pred EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 466 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 466 (1068)
||+|+..|.|+|+|..+...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999999999977644444 57799999999999999886 8999999999999999999987799999999999
Q ss_pred EeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee-ee
Q 001490 467 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KR 545 (1068)
Q Consensus 467 i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~ 545 (1068)
.+++|. ++.++++|+.||.|++||.+.......-..|+.+|..+.+-|.|..++++++ +.+++||+.+|.. +.
T Consensus 159 g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 159 GDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQLLT 232 (487)
T ss_pred eccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCceehh
Confidence 999976 5579999999999999999998766666678889999999999999999874 4599999996654 44
Q ss_pred EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001490 546 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 625 (1068)
Q Consensus 546 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 625 (1068)
.+..|. ..|+|+.+..++..|++|+-|+.+++||+.+.+.+..+...+ +|.+++.+|++..++.|..+|.+.+-
T Consensus 233 ~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 233 SMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred hhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeee
Confidence 444466 899999999999999999999999999999999999998764 48999999999999999999988776
Q ss_pred ECC
Q 001490 626 ETP 628 (1068)
Q Consensus 626 d~~ 628 (1068)
+..
T Consensus 307 r~~ 309 (487)
T KOG0310|consen 307 RRE 309 (487)
T ss_pred hhh
Confidence 433
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.3e-28 Score=294.85 Aligned_cols=322 Identities=14% Similarity=0.179 Sum_probs=248.2
Q ss_pred cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCC----Ccc
Q 001490 332 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 407 (1068)
Q Consensus 332 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~----~~~ 407 (1068)
+|-+++|+..+.+..... +..-+.+|...|.+++|+|+|++||+|+.|+.|+|||+.+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 577888888765443210 11114468999999999999999999999999999998642 111
Q ss_pred c-ceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCc
Q 001490 408 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 486 (1068)
Q Consensus 408 ~-~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~ 486 (1068)
. ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++++.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111233 3467999999886433 7999999999999999999999999999999999999854 5679999999999
Q ss_pred EEEEeCCCCCceEEecCCCCcEEEEEEc-cCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEeccccccCCeEEEEEec
Q 001490 487 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 487 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
|++||+.+......+..+ ..+.++.|+ +++.++++++. ++.|++||++++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988877766644 578899995 57899999875 6689999998765 466677777 889999997
Q ss_pred CCCEEEEEECCCeEEEEEcCCC------eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccc
Q 001490 565 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 638 (1068)
Q Consensus 565 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1068)
++.++++++.|++|++||+..+ ..+..+..|. ..+..++|+|++.+|++|+.|+.|++|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 4566676553 4578899999999999999999999999765433221110
Q ss_pred cc-cceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEE
Q 001490 639 LS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 717 (1068)
Q Consensus 639 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 717 (1068)
.. ..+. . .....+...|.+++
T Consensus 749 ~~~~~~~--------------------------------------------------------~--~~~~~~~~~V~~v~ 770 (793)
T PLN00181 749 KTIDPVS--------------------------------------------------------G--LEVDDASQFISSVC 770 (793)
T ss_pred ccCCccc--------------------------------------------------------c--cccCCCCcEEEEEE
Confidence 00 0000 0 00011456799999
Q ss_pred EecCCceEEEeecCccEEEEec
Q 001490 718 YNNGGQAIFALASNGVHLMWRW 739 (1068)
Q Consensus 718 ~s~~g~~l~~~~~dg~i~iw~~ 739 (1068)
|++++..+++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999985
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=218.37 Aligned_cols=310 Identities=17% Similarity=0.208 Sum_probs=241.0
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
..++.+|...+ .|.+++|+|.|. |.|+|+..++.+|-....-..++... +.....+......-+.|.+.|.|.+
T Consensus 23 f~~i~~l~dsq-airav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 23 FEAINILEDSQ-AIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred eEEEEEecchh-heeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEE
Confidence 35667777654 899999999998 78999999999988764322221100 0000001112222567999999999
Q ss_pred ECCCCCEEEEEeCCcEEEEEEcc--CCCcccceEEEccccccEEEEEEcCC---CCcEEEEEEe-CCCcEEEEECCCCce
Q 001490 380 WSPDGSLLGVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR 453 (1068)
Q Consensus 380 ~spdg~~las~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~ 453 (1068)
|||+|.+||+|+.|++|++.-.+ +.+......++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 99999999999999999987554 43334445578889999999999654 222 566654 577899999999999
Q ss_pred eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC-------CCcEEEEEEccCCCEEEEEeeC
Q 001490 454 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 454 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~ 526 (1068)
.+.+.+|.+.|.++- ++ ++.++++|+.|.+|++||++-..++..+... ...|.+++..|.|++|+++..
T Consensus 176 ~~a~sghtghilaly-sw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALY-SW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEE-Ee--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 999999999998874 22 6679999999999999999988777655332 246899999999999999876
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEeCCCCCCCCc
Q 001490 527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENP 602 (1068)
Q Consensus 527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~ 602 (1068)
+....+||++.++.++.|..|. ..|.++.|+|...++++++.|..|++-|+... -++.... .+...+.
T Consensus 252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i 323 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAI 323 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceE
Confidence 5669999999999999999988 99999999999999999999999999998642 1122222 2334577
Q ss_pred eEEEecCCCEEEEEECCCeEEEEECC
Q 001490 603 RICFNKNGTLLAVIANENRIKILETP 628 (1068)
Q Consensus 603 ~v~~s~~~~~l~~~~~dg~i~iwd~~ 628 (1068)
.+.|+|..--+++.+.|.+..+|.+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 89999999899999999999999764
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.5e-30 Score=253.24 Aligned_cols=297 Identities=16% Similarity=0.228 Sum_probs=256.5
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcce
Q 001490 296 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 375 (1068)
Q Consensus 296 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 375 (1068)
..+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.... ..|.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 5678899999999999999999999965 469999999999999987763221 1177888899
Q ss_pred EEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490 376 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 455 (1068)
Q Consensus 376 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 455 (1068)
+.+.|.++++++++++.|+.+++|++...+... ++.+|++.|+++.|..... .+++|+.|.+|++||+..+.+.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999876554 7889999999999998776 59999999999999999988887
Q ss_pred EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490 456 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 535 (1068)
Q Consensus 456 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 535 (1068)
++- ....+..|+.. ...+++|-.|+.|++||.++.........++ .|+++..++++..+.+++. +..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 664 33445555543 3478899999999999999999988888776 9999999999999999976 667999
Q ss_pred EeCCCCeeeeEEeccccc-cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490 536 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614 (1068)
Q Consensus 536 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 614 (1068)
.|+++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+........|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 999999888887654321 2348889999999999999999999999999999999998776655799999999999999
Q ss_pred EEECCCeEEEE
Q 001490 615 VIANENRIKIL 625 (1068)
Q Consensus 615 ~~~~dg~i~iw 625 (1068)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999998
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.4e-28 Score=272.51 Aligned_cols=306 Identities=19% Similarity=0.248 Sum_probs=248.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEc--CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490 309 GSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386 (1068)
Q Consensus 309 h~~~V~~v~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~ 386 (1068)
+...|..+..+|||. .+|+|+ .|+.++||+.+.--... +-++.. .+-..-....|.+.|.|+.|||||+|
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 455689999999998 569999 89999999975411000 011111 00011125679999999999999999
Q ss_pred EEEEeCCcEEEEEEccC----------C-----CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490 387 LGVAYSKHIVQLYAYHG----------G-----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 451 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 451 (1068)
||+|+.|+.|.||+... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 1 01234557889999999999999999 9999999999999999999
Q ss_pred ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC------CcEEEEEEccCCCEEEEEee
Q 001490 452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCGT 525 (1068)
Q Consensus 452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------~~i~~~~~s~d~~~l~~~~~ 525 (1068)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|+...-+....+..+- ..+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999965 77899999999999999977655555544332 25788999999999999887
Q ss_pred CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC-------------CC----EEEEEECCCeEEEEEcCCCeE
Q 001490 526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-------------KD----QILAAGDDHVIKIWDMNKVQL 588 (1068)
Q Consensus 526 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~~~s~dg~i~iwd~~~~~~ 588 (1068)
-+.+...+.|.+-.+.+.-..+.||. .++.++.|+|. .+ .+++|+.|++|.||.....++
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 77778889999998888889999999 89999999982 11 456699999999999988887
Q ss_pred EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 589 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 589 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
+.....-.. ..|..++|+|||..|++++.||+|.+...+..
T Consensus 317 l~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 317 LFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 766543222 35899999999999999999999999998854
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=224.92 Aligned_cols=287 Identities=10% Similarity=0.093 Sum_probs=238.7
Q ss_pred ecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCC
Q 001490 305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 384 (1068)
Q Consensus 305 ~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg 384 (1068)
.|.||..+++.+.|..+|. ||.+++.|.++.||-..+|+.+.+ +.||.+.|+|+..+.+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence 3689999999999999998 889999999999999999999987 88999999999999999
Q ss_pred CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-----CCCcEEEEECC-------CCc
Q 001490 385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS 452 (1068)
Q Consensus 385 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~ 452 (1068)
+++++|+.|.++++||+++|+++.. + ....+|..+.|+++|. +++... ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999987653 2 3456899999999999 344333 34579999987 445
Q ss_pred eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEEEEccCCCEEEEEeeCCCCce
Q 001490 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 531 (1068)
Q Consensus 453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 531 (1068)
+...+..+...++.+.|.+ -+++|++|.+||.|..||++++.... ....|...|+.+.+++|..++++++. |.
T Consensus 139 p~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt 212 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT 212 (327)
T ss_pred ceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence 6778888999999999977 45799999999999999999976554 55778889999999999999999986 66
Q ss_pred eEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEE--EEcCCC------------eEEEEEeCCCC
Q 001490 532 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--WDMNKV------------QLLTTIDAGGG 597 (1068)
Q Consensus 532 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i--wd~~~~------------~~~~~~~~~~~ 597 (1068)
+-.+||..+-+.++++.... +|++.+++|....++.|+.....-+ =+.+.| +.+..+++ |
T Consensus 213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--H 286 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--H 286 (327)
T ss_pred cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--c
Confidence 79999999999999998754 9999999999888888653322211 111222 33344444 4
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490 598 LPENPRICFNKNGTLLAVIANENRIKILETPE 629 (1068)
Q Consensus 598 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 629 (1068)
..+|++++|+|+|+..++|+.||.|++...+.
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 66799999999999999999999999986653
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=228.86 Aligned_cols=290 Identities=16% Similarity=0.256 Sum_probs=245.8
Q ss_pred ceEEecCCCCcEEEEEEcc---CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE
Q 001490 497 ARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 573 (1068)
Q Consensus 497 ~~~~~~~~~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 573 (1068)
......+|..+|..++||| +|-+|++++. |+.-.+-+-.+|..+.+|.+|. +.|++...+.+....++++
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr~g~tgdwigtfeghk---gavw~~~l~~na~~aasaa 78 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLRNGDTGDWIGTFEGHK---GAVWSATLNKNATRAASAA 78 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhccCCCCCcEEeeeccC---cceeeeecCchhhhhhhhc
Confidence 3455667888999999976 8889998876 4446677788999999999999 9999999999888888999
Q ss_pred CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCce-eeeccccccceeeeEEcCCc
Q 001490 574 DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLRKLSVNPIS 652 (1068)
Q Consensus 574 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~ 652 (1068)
.|-+-++||.-+|..+..+... ..|..++|+.|.++|++|+.+..++|||+..... ...+
T Consensus 79 adftakvw~a~tgdelhsf~hk---hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~---------------- 139 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSFEHK---HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI---------------- 139 (334)
T ss_pred ccchhhhhhhhhhhhhhhhhhh---heeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh----------------
Confidence 9999999999999999988643 3489999999999999999999999999875421 1111
Q ss_pred cccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCc
Q 001490 653 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 732 (1068)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 732 (1068)
.+|.+.|+.+.|....+.+++.+.++
T Consensus 140 ------------------------------------------------------~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 140 ------------------------------------------------------SGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred ------------------------------------------------------cCCCCcceeEEEeccCceEEeeccCC
Confidence 23677788888888888888888889
Q ss_pred cEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeE
Q 001490 733 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 812 (1068)
Q Consensus 733 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~ 812 (1068)
+||+||... |....... ...+|+++.+++||++|.++..+.|.+||..+...+
T Consensus 166 tVRLWD~rT----------------------gt~v~sL~-----~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 166 TVRLWDHRT----------------------GTEVQSLE-----FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred ceEEEEecc----------------------CcEEEEEe-----cCCCCcceeeccCCCEEEEecCceeEEeccccccce
Confidence 998887543 33333333 467899999999999999999999999999999998
Q ss_pred EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001490 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 891 (1068)
Q Consensus 813 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~ 891 (1068)
..++ -...|.+..++| +..++++|+.|..++.||..+|+.+..+ ++|.++|.|+.|+|||...++||+||+|+||..
T Consensus 219 Ks~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 219 KSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred eecc-CccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 8876 456789999999 7789999999999999999999999886 899999999999999999999999999999998
Q ss_pred CCCc
Q 001490 892 DGWG 895 (1068)
Q Consensus 892 ~~~~ 895 (1068)
..++
T Consensus 297 ~~~~ 300 (334)
T KOG0278|consen 297 TPGK 300 (334)
T ss_pred cCCC
Confidence 7654
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-26 Score=223.74 Aligned_cols=286 Identities=16% Similarity=0.239 Sum_probs=235.9
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~ 386 (1068)
..-...|.++.|+++|. ++++++.|.+++|||..+|++++. +..++..|..+.|......
T Consensus 11 ~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~ 70 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNT 70 (311)
T ss_pred ccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCce
Confidence 33455899999999998 567788889999999999999876 4456678889999888877
Q ss_pred EEEEeC--CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490 387 LGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464 (1068)
Q Consensus 387 las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 464 (1068)
++.++. |.+|+.-++.+++.++ -+.||...|.+++.+|-+. .+++++.|++|++||++..++...+.....++
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi 145 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI 145 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc
Confidence 777766 7899999999988776 7899999999999999998 89999999999999999888877775544444
Q ss_pred EEEeeeecCCccEEEEEEcCCcEEEEeCCCCC--ceEEecC---CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001490 465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 539 (1068)
Q Consensus 465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~ 539 (1068)
++| ++.|-++|++...+.|++||++... +...+.. .....+.+.|||||++++.+.. .+.+++.|.-
T Consensus 146 --~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf 217 (311)
T KOG1446|consen 146 --AAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAF 217 (311)
T ss_pred --eeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEcc
Confidence 355 4477788888888899999998752 2333333 3557899999999999998875 6679999999
Q ss_pred CCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490 540 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 619 (1068)
Q Consensus 540 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 619 (1068)
+|..+.++.++......-...+|+||++++++|+.||+|.+|+++++..+..+.+. ....+.++.|+|.-..+++++
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~-- 294 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS-- 294 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--
Confidence 99999999988854444467889999999999999999999999999999999875 345688999999877777655
Q ss_pred CeEEEEECC
Q 001490 620 NRIKILETP 628 (1068)
Q Consensus 620 g~i~iwd~~ 628 (1068)
..+.+|-..
T Consensus 295 s~l~fw~p~ 303 (311)
T KOG1446|consen 295 SNLVFWLPD 303 (311)
T ss_pred ceEEEEecc
Confidence 467777654
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.9e-27 Score=221.21 Aligned_cols=287 Identities=13% Similarity=0.163 Sum_probs=239.9
Q ss_pred eeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490 366 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 445 (1068)
Q Consensus 366 ~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 445 (1068)
..+.||+.+++.+.++.+|.+|.+|+.|.++.||--..|+.+. ++.||.+.|+|+..+-+.+ .+++|+.|.++++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kL 78 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKL 78 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEE
Confidence 3488999999999999999999999999999999998888666 7889999999999999999 8999999999999
Q ss_pred EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-----CCcEEEEeCC-------CCCceEEecCCCCcEEEEEE
Q 001490 446 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAY 513 (1068)
Q Consensus 446 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~ 513 (1068)
||+++|+++..++ ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+-|
T Consensus 79 WDv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 79 WDVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred EEcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 9999999999987 677899999977 4455555543 3579999987 44556778888899999999
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeCCCCee-eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001490 514 SANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592 (1068)
Q Consensus 514 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 592 (1068)
+|-+++|++|.. ++.|.+||.++|.. +..-+.|. ..|+.+.++++..++++++.|.+-++||..+.+.+.++
T Consensus 156 g~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 156 GPLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred cccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 999999999986 56699999999854 44445555 79999999999999999999999999999999999999
Q ss_pred eCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE--CCC------------CceeeeccccccceeeeEEcCCccccccc
Q 001490 593 DAGGGLPENPRICFNKNGTLLAVIANENRIKILE--TPE------------SNSVDAAGVLSDNLRKLSVNPISTVTGAG 658 (1068)
Q Consensus 593 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd--~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 658 (1068)
... .++++.+++|...+++.|+.....-+=- .+. .+.+...++|.++|++++++
T Consensus 229 ~te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh--------- 296 (327)
T KOG0643|consen 229 TTE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH--------- 296 (327)
T ss_pred eec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC---------
Confidence 765 4589999999877777765432222211 111 24456778999999999996
Q ss_pred cccCeeeecCCCCCCcccceeecccccceeeccc
Q 001490 659 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 692 (1068)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 692 (1068)
|+|+..++|+.||.||+...+
T Consensus 297 -------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 -------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred -------------CCCcccccCCCCceEEEEEec
Confidence 789999999999999997544
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.4e-28 Score=264.90 Aligned_cols=310 Identities=16% Similarity=0.212 Sum_probs=225.6
Q ss_pred ceeeecc-cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 301 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 301 ~~~~~l~-~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
...+.+. .|.+.||++.||+||+ |||+|+.|+.|+||.+...+....... +.. | ..+. +.+ ...+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~---~~~-~-~~~~---~~~-~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEG---DSS-C-MYFE---YNA-NSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhccccc---ccc-h-hhhh---hhh-ccccCccc
Confidence 4456667 8999999999999998 779999999999999977444221000 000 0 0000 000 00011111
Q ss_pred ECC---CCC--EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490 380 WSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 454 (1068)
Q Consensus 380 ~sp---dg~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 454 (1068)
-++ .++ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....++
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 011 11112222222221111111123344788999999999999877 6999999999999999999999
Q ss_pred eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490 455 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 534 (1068)
Q Consensus 455 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 534 (1068)
+.|. |...|+|++|+|. |.+++++|+-||.||+|++...+...-...+ .-|++++|.|||++.++|+. +|..+
T Consensus 404 ~~F~-HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEeccc-CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEE
Confidence 9996 9999999999998 5579999999999999999876655544444 68999999999999999997 66799
Q ss_pred EEeCCCCeeeeEEecccc-----ccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490 535 EWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 608 (1068)
Q Consensus 535 ~wd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 608 (1068)
+|+....+....+.-+.. ....|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+++......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 999887776655443221 12469999999754 358899999999999999999999998776666667889999
Q ss_pred CCCEEEEEECCCeEEEEECCCC
Q 001490 609 NGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 609 ~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
||++|+++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998654
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.6e-27 Score=234.92 Aligned_cols=282 Identities=20% Similarity=0.364 Sum_probs=233.1
Q ss_pred cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC---C
Q 001490 308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G 384 (1068)
Q Consensus 308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd---g 384 (1068)
-|.+.|.++... ++ .+.+|+.||.++|||.. |+.... +.||.++|.+++|--. .
T Consensus 103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence 578899999998 44 56999999999999975 554443 7899999998888543 3
Q ss_pred CEEEEEeCCcEEEEEEccCCCcc-cceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC--------------
Q 001490 385 SLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------------- 449 (1068)
Q Consensus 385 ~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-------------- 449 (1068)
..+++++.|.++++|.++.++.. .......||...|.+++..++|. .+++|+.|.+|.||+..
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence 35999999999999999887642 22223459999999999999999 89999999999999932
Q ss_pred -----------CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCC
Q 001490 450 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 518 (1068)
Q Consensus 450 -----------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~ 518 (1068)
++.++.++.||.++|.++.|.+ ...+++++.|.+|+.||+.+++....+... ..+.++.++|..+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSK 313 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccc
Confidence 1234567889999999999975 348999999999999999999887776543 4789999999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCe---eeeEEeccccccCCeEEEEEecCCCE-EEEEECCCeEEEEEcCCCe-EEEEEe
Q 001490 519 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTID 593 (1068)
Q Consensus 519 ~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~~~~-~~~~~~ 593 (1068)
+|++++. +..+++||.+++. ....|.+|. +.|.++.|+|...+ +++|+.|+++++||+++.. ++..+.
T Consensus 314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999986 6679999999763 456778888 89999999998665 5669999999999999877 888888
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490 594 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 628 (1068)
Q Consensus 594 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 628 (1068)
.|. ..|.++.|+. +..+++|+.|++|+|+...
T Consensus 387 ~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 774 4588888875 6699999999999998654
No 79
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.5e-26 Score=258.90 Aligned_cols=289 Identities=12% Similarity=0.122 Sum_probs=224.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-CCCEE
Q 001490 309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 387 (1068)
Q Consensus 309 h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-dg~~l 387 (1068)
|-..|....+++|+..+ ++++.+..+..|+...|..+. +.............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCCc-EeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 44578888889997644 666777888899877654321 11111111222334789999999999999 89999
Q ss_pred EEEeCCcEEEEEEccCCCc----ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490 388 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 463 (1068)
Q Consensus 388 as~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 463 (1068)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999987532 1234468899999999999998643 7999999999999999999999999999999
Q ss_pred EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCc-EEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490 464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 542 (1068)
Q Consensus 464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 542 (1068)
|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999977 6789999999999999999998888787777654 45678899988888877665567889999998754
Q ss_pred -eeeEEeccccccCCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490 543 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 610 (1068)
Q Consensus 543 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 610 (1068)
.......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.-
T Consensus 249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW 315 (493)
T ss_pred CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence 333333222 24566678999999999887 59999999999998877765432 2457788888853
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.6e-27 Score=267.10 Aligned_cols=306 Identities=17% Similarity=0.234 Sum_probs=239.8
Q ss_pred ccccEEEEEEecCCceEEEee--cCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEE
Q 001490 709 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 786 (1068)
Q Consensus 709 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 786 (1068)
+...|.++..+|+|..+++++ .||.++||+...--. ....++..-...+.+.. .|...|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~m~----~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCTMD----DHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhheeec----cccCceeEEEE
Confidence 455699999999999999999 889999998653211 01111211111111111 38999999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccC------------------ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEE
Q 001490 787 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 847 (1068)
Q Consensus 787 s~dg~~l~~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 847 (1068)
+|||++||+|+| +.|.||+... ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 6789998762 346778999999999999999 99999999999999999
Q ss_pred EcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEE
Q 001490 848 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 927 (1068)
Q Consensus 848 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 927 (1068)
+..+.+.+.++++|.+.|..+.|.|-|++||+-+.|++|+||++.+....+ .+..+..+......+..+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999987744333 333333333333468899999999999
Q ss_pred EE--EeC---CeEEEEECCCceeeeeeccCCCcCEEEEEEec--------CC-----C----EEEEEECCCcEEEEEcCC
Q 001490 928 LL--VHE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 985 (1068)
Q Consensus 928 a~--~~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~~~dg~v~vwd~~~ 985 (1068)
++ +.+ ..+.|.+-.+-+.-.. +.||..++..++|.| +| . .+|+|+.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 98 322 3588888766555554 668999999999998 11 1 578999999999999988
Q ss_pred CcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 001490 986 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1042 (1068)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~ 1042 (1068)
.+++.... ...+ -..+.++|+| ||-.|++++.||+|.+..+.+.+-.
T Consensus 314 ~RPl~vi~-------~lf~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 314 PRPLFVIH-------NLFN--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred CCchhhhh-------hhhc--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence 88774443 1111 2346899999 7999999999999999999876643
No 81
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=7.6e-28 Score=230.17 Aligned_cols=308 Identities=13% Similarity=0.199 Sum_probs=237.0
Q ss_pred CCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCccc
Q 001490 597 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 676 (1068)
Q Consensus 597 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1068)
+..++.+.+|++||.++++|+.|..|+|+|++..-... .+.+
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~~~e----------------------------------- 152 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---KPKE----------------------------------- 152 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---chhh-----------------------------------
Confidence 34568999999999999999999999999988431110 0000
Q ss_pred ceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCC
Q 001490 677 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 756 (1068)
Q Consensus 677 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 756 (1068)
+..+..+ +...+....-.|...|+.+.|.|....|++++.|++++++|+........ .
T Consensus 153 m~~~~~q--------------a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--------~ 210 (430)
T KOG0640|consen 153 MISGDTQ--------------ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--------F 210 (430)
T ss_pred hccCCcc--------------cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH--------H
Confidence 0000000 00000111112888999999999999999999999999999876432110 1
Q ss_pred cccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEccCceeEEEec---CCCCCeEEEEEeCCCC
Q 001490 757 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDN 832 (1068)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~ 832 (1068)
+++ ....+|+++.|+|.|.+|++|.| .++++||++|.++...-. .|.+.|+++.+|+ .+
T Consensus 211 K~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~ 273 (430)
T KOG0640|consen 211 KVF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TG 273 (430)
T ss_pred HHh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Cc
Confidence 111 15678999999999999999997 789999999998876543 5788999999999 99
Q ss_pred CEEEEEECCCeEEEEEcCCceeeeeec-cccc-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCccc
Q 001490 833 NVIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 910 (1068)
Q Consensus 833 ~~lasg~~dg~v~iwd~~~~~~~~~~~-~h~~-~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 910 (1068)
++.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|.+|++|.+.++.......=....+...
T Consensus 274 ~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~ 353 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK 353 (430)
T ss_pred cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence 999999999999999999999998885 4654 78999999999999999999999999999976433221111112111
Q ss_pred CCCCceEEEEeeCCCEEEEE--eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001490 911 LAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 911 ~~~~v~~~~~spdg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~ 984 (1068)
--+...|.....+++.- ..+.+.-||.+++..+..+..+|++.+..+.-||.+.-+.||+.|..+++|--.
T Consensus 354 ---~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 354 ---HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ---hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 23456777778887773 456799999999999998889999999999999999999999999999999643
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=9.5e-27 Score=260.12 Aligned_cols=284 Identities=17% Similarity=0.288 Sum_probs=248.5
Q ss_pred cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490 308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 387 (1068)
Q Consensus 308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l 387 (1068)
.|...+.+..|+ ++ .+.+|+.|++|.+||..++..+.. .+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 356689999999 45 469999999999999999987753 177999999999999889999
Q ss_pred EEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001490 388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 467 (1068)
Q Consensus 388 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 467 (1068)
++|+.|.++++||+.+|++.. .+.+|...|.++...+. ++++|+.|.+|++|++.++..+..+.+|.++|+++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998777 78899999999987543 68889999999999999999999999999999999
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeE
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 546 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~ 546 (1068)
... +.++++|+.|++|++||+.+.+++..+.+|...|.++.+.+. ..+++|+. |..|++||+.++ +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 569999999999999999999999999999999999987766 88999887 567999999999 99999
Q ss_pred EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001490 547 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 626 (1068)
Q Consensus 547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 626 (1068)
+.+|. ..+..+.+ .++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.|+.+++||
T Consensus 409 l~~h~---~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---cccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 66655444 5689999999999999999999999999874 23345666655 46899999999999999
Q ss_pred CCCCceeeec
Q 001490 627 TPESNSVDAA 636 (1068)
Q Consensus 627 ~~~~~~~~~~ 636 (1068)
++++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9998777655
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=236.96 Aligned_cols=282 Identities=15% Similarity=0.207 Sum_probs=231.7
Q ss_pred ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490 709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 788 (1068)
Q Consensus 709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 788 (1068)
..+.|.+++|+|...+=++.+..-.+.||+...... ... +. .....+.++.|..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~--~s--rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT--FS--RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh--HH--hhccceeEEEeec
Confidence 456899999999877666666666777776433211 100 00 1456789999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEE
Q 001490 789 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 867 (1068)
Q Consensus 789 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 867 (1068)
||+++|.|+ .|.|+|||+++...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999998 4999999988877888999999999999999999999999999999999999999887789999999999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceee
Q 001490 868 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 946 (1068)
Q Consensus 868 l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~ 946 (1068)
.+|+|- +.+++|||.||+|++||+.... ......-.+ .+|..+.|-|.|..+|+++.+.++|||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999996 4589999999999999998743 122222222 3699999999999999999999999999966655
Q ss_pred eeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001490 947 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1026 (1068)
Q Consensus 947 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 1026 (1068)
......|...|+|+++..|++.|++++-|+.|++||+.+.+.+..+.. +...++++.+| |++.++.|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-----------~~pvLsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-----------PGPVLSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-----------ccceeeEEecC-CCceEEEec
Confidence 544556999999999999999999999999999999999999987761 12356778888 679999999
Q ss_pred CCCcEEEEeC
Q 001490 1027 TNGEVYVIEP 1036 (1068)
Q Consensus 1027 ~dg~i~~w~~ 1036 (1068)
.||.+.+=+.
T Consensus 299 snGlv~~rr~ 308 (487)
T KOG0310|consen 299 SNGLVSIRRR 308 (487)
T ss_pred ccceeeeehh
Confidence 9999877643
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-25 Score=216.86 Aligned_cols=271 Identities=16% Similarity=0.190 Sum_probs=229.0
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC--CCcEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 445 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--d~~i~i 445 (1068)
+..-...|.++.|+++|.+|++++.|.+++|||..+++.++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44467899999999999999999999999999999998766 6667777899999988777 4555554 889999
Q ss_pred EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEee
Q 001490 446 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 525 (1068)
Q Consensus 446 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 525 (1068)
.++.+.+.++.|.||...|.+++.+|.+ ..+++++.|++|++||++..+++..+.....++ .+|.|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999998865 599999999999999999888887776666555 689999999999875
Q ss_pred CCCCceeEEEEeCCCC--eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCC-c
Q 001490 526 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 602 (1068)
Q Consensus 526 ~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 602 (1068)
...|.+||++.- .+..++.-......+...+.|+|||++++.+...+.+++.|.-+|..+..+..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 236999999853 444555444333478899999999999999999999999999999999988766543322 4
Q ss_pred eEEEecCCCEEEEEECCCeEEEEECCCCceeeeccc-cccceeeeEEcCC
Q 001490 603 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI 651 (1068)
Q Consensus 603 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~ 651 (1068)
..+|+||++++++|+.||+|.+|+++++..+..+++ +...+.++.|+|.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 778999999999999999999999999999999888 5777888887754
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-26 Score=247.73 Aligned_cols=279 Identities=18% Similarity=0.266 Sum_probs=241.0
Q ss_pred ceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC
Q 001490 313 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 392 (1068)
Q Consensus 313 V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~ 392 (1068)
..-+.||..+ +||+|.. ..|.+|+..+++...... -++..|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l~~-------------------~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTELCS-------------------FGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEeEe-------------------cCCCceEEEEECCCCCEEEEeec
Confidence 4457888655 5677764 689999999998664322 24789999999999999999999
Q ss_pred CcEEEEEEccCCCcccceEEEcc-ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE-eccCCCcEEEEeee
Q 001490 393 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH 470 (1068)
Q Consensus 393 d~~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~ 470 (1068)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 5667 99999999998 34 799999999999999998876655 88999999999996
Q ss_pred ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001490 471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 549 (1068)
Q Consensus 471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 549 (1068)
+ |+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|++ ..|+.|++||..+|..+.....
T Consensus 311 ~--d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 P--DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred C--CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 6 778999999999999999988899999999999999999999 5567777764 4588999999999998887765
Q ss_pred cccccCCeEEEEEecCCCEEEE--EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490 550 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 627 (1068)
Q Consensus 550 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 627 (1068)
. ..|.++.|++..+.+++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++
T Consensus 387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 3 58999999999887777 5577899999999999999988774 46999999999999999999999999998
Q ss_pred CCC
Q 001490 628 PES 630 (1068)
Q Consensus 628 ~~~ 630 (1068)
-+.
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.8e-26 Score=213.97 Aligned_cols=279 Identities=13% Similarity=0.218 Sum_probs=234.8
Q ss_pred eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec-CCCEEEEEECCCeEE
Q 001490 545 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIK 623 (1068)
Q Consensus 545 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~ 623 (1068)
+.+++|. ..+.+++|+.+|..+++|+.|+++.+|+++..+........++...|-.++|+| ...++++++.|.+|+
T Consensus 14 r~~~~~~---~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHV---QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhh---hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 4455666 889999999999999999999999999999988887777777777888999998 677999999999999
Q ss_pred EEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceee
Q 001490 624 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 703 (1068)
Q Consensus 624 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 703 (1068)
+||...+++........+.+. +.+ +|+|.+++.+..|..|.+.|...........
T Consensus 91 ~wd~r~~k~~~~i~~~~eni~-i~w----------------------sp~g~~~~~~~kdD~it~id~r~~~~~~~~~-- 145 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENIN-ITW----------------------SPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-- 145 (313)
T ss_pred EEEeccCcEEEEeeccCcceE-EEE----------------------cCCCCEEEEecCcccEEEEEecccceeehhc--
Confidence 999999988877765554442 223 5889999999999999999876544333222
Q ss_pred cCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeE
Q 001490 704 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 783 (1068)
Q Consensus 704 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 783 (1068)
....+..+.|+.++..++.....|.|.|..++.-+. +..+ ..|.....|
T Consensus 146 -----~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp----------------------v~si----~AH~snCic 194 (313)
T KOG1407|consen 146 -----FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP----------------------VQSI----KAHPSNCIC 194 (313)
T ss_pred -----ccceeeeeeecCCCCEEEEecCCceEEEEecccccc----------------------cccc----ccCCcceEE
Confidence 234567789998899888888889999988763211 1111 148889999
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccc
Q 001490 784 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 862 (1068)
Q Consensus 784 l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~ 862 (1068)
+.|+|+|+|+|+|+ |..+.+||++..-+.+.+..+.-+|+.+.||. ||++||+|++|..|-|=++++|..+..++ +.
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~ 272 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CE 272 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-cc
Confidence 99999999999998 78899999999999999999999999999999 99999999999999999999999998888 88
Q ss_pred cCeEEEEEcCCCCEEEEEeCCC
Q 001490 863 KRVTGLVFSDALNILVSSGGDA 884 (1068)
Q Consensus 863 ~~V~~l~~spdg~~l~s~s~dg 884 (1068)
++...++|+|...+||.++.|.
T Consensus 273 ~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 273 GPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred CCceeEEecCCCceeeEEecCC
Confidence 9999999999999999988763
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=9.6e-27 Score=237.83 Aligned_cols=313 Identities=16% Similarity=0.188 Sum_probs=225.3
Q ss_pred eccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEE
Q 001490 635 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 714 (1068)
Q Consensus 635 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~ 714 (1068)
.+++|...|.++++. |.|..+++|+.|.+|++||+......... +..-.......|+
T Consensus 162 ~l~hgtk~Vsal~~D----------------------p~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E~h~i~ 218 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVD----------------------PSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCETHQIN 218 (641)
T ss_pred eccCCceEEEEeeec----------------------CCCceeeeccccceEEEEecccccccchh-hhccCcccccccc
Confidence 455666677777775 67889999999999999998754433221 2222222556788
Q ss_pred EEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001490 715 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 794 (1068)
Q Consensus 715 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 794 (1068)
++.|++.|..|++.+.....+|+| .||..+.
T Consensus 219 sl~ys~Tg~~iLvvsg~aqakl~D-------------------------------------------------RdG~~~~ 249 (641)
T KOG0772|consen 219 SLQYSVTGDQILVVSGSAQAKLLD-------------------------------------------------RDGFEIV 249 (641)
T ss_pred eeeecCCCCeEEEEecCcceeEEc-------------------------------------------------cCCceee
Confidence 899999988888888876666654 2333333
Q ss_pred EEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce-eeeeec-----ccccCeEEE
Q 001490 795 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLE-----GHSKRVTGL 868 (1068)
Q Consensus 795 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~~~-----~h~~~V~~l 868 (1068)
-...|--+|-|+. .-++|...++|.+|.|++...+++++.||+++|||+...+ .+..++ +..-+++.+
T Consensus 250 e~~KGDQYI~Dm~------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC 323 (641)
T KOG0772|consen 250 EFSKGDQYIRDMY------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC 323 (641)
T ss_pred eeeccchhhhhhh------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence 2222333333332 3457889999999999888899999999999999998643 223332 344578999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeee
Q 001490 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK 947 (1068)
Q Consensus 869 ~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~ 947 (1068)
+|++||+++|.|+.||.|.+|+..+........+ ...|.. ...|++++||+||++|++ +.|++++|||++..+...
T Consensus 324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~-g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLP-GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred ecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCC-CCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence 9999999999999999999999865432222222 222221 136999999999999999 999999999998765432
Q ss_pred eeccC--CCcCEEEEEEecCCCEEEEEEC------CCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCC
Q 001490 948 QWFPI--SSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1019 (1068)
Q Consensus 948 ~~~~~--h~~~v~~l~fs~dg~~l~t~~~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1019 (1068)
....+ ...+-+.++||||.++|+||+. .|.+.+||..+.+.+..+... ...+..+.||| .-
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~----------~aSvv~~~Whp-kL 469 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS----------TASVVRCLWHP-KL 469 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----------CceEEEEeecc-hh
Confidence 21222 2456688999999999999874 478999999999999887722 24466789999 57
Q ss_pred CEEEEEeCCCcEEEE-eCCCC
Q 001490 1020 TQFAVGLTNGEVYVI-EPNEP 1039 (1068)
Q Consensus 1020 ~~l~~~~~dg~i~~w-~~~~~ 1039 (1068)
+.+.+|+.||.++++ |-+.+
T Consensus 470 NQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 470 NQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred hheeeecCCCceEEEECcccc
Confidence 889999999999875 44433
No 88
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.6e-26 Score=231.43 Aligned_cols=301 Identities=15% Similarity=0.198 Sum_probs=238.8
Q ss_pred eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeec----cccccceeeeeecCCCcceEEE
Q 001490 303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRV 378 (1068)
Q Consensus 303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~h~~~V~~~ 378 (1068)
.+.+..|.-.|.||+++||++ ...+++.+++|.=|++.+|+.... +|.. +....+++... .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 456678888999999999998 569999999999999999986632 1111 11222333322 4899999999
Q ss_pred EECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001490 379 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 458 (1068)
Q Consensus 379 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 458 (1068)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|+.|++|+++.-..+.++.
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999998776 6889999999999987666 68999999999999999998999999
Q ss_pred cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490 459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
+|...|.+|.... -++.+-+|+.|+++++|++ ....+..+.++.+.+.|++|-.+ ..+++|+. +|.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeee
Confidence 9999999997654 3345666669999999999 45566777888889999999655 46677775 667999999
Q ss_pred CCCeeeeEEeccc-cc--------cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEeCCCCCCCCceEE
Q 001490 539 SEGAIKRTYQGLQ-LQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 605 (1068)
Q Consensus 539 ~~~~~~~~~~~~~-~~--------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 605 (1068)
.+.+++.+....+ .. ...|++++..|..+.+++|+.+|.|++|-+..+ +++..++.. ..|++++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence 9988877654322 11 127899999999999999999999999999887 445555543 4489999
Q ss_pred EecCCCEEEEE-ECCCeEEEE
Q 001490 606 FNKNGTLLAVI-ANENRIKIL 625 (1068)
Q Consensus 606 ~s~~~~~l~~~-~~dg~i~iw 625 (1068)
|+++|+.+++| +....+--|
T Consensus 433 f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 433 FSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred EccCCCEEEEeccccccccee
Confidence 99999966665 333333333
No 89
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=251.51 Aligned_cols=276 Identities=15% Similarity=0.206 Sum_probs=213.5
Q ss_pred cccccEEEEEEecCCceEEEeecCccEEEEeccCCcc------C------------------CCc-cc---------eec
Q 001490 708 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EA---------TTK 753 (1068)
Q Consensus 708 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~------~------------------~~~-~~---------~~~ 753 (1068)
.|.+.|.++.||+||++|++++.||.|+||.+...+. . ... .. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876211 0 000 00 000
Q ss_pred cCCcccCCCCCCceeeec-CCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCC
Q 001490 754 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 831 (1068)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 831 (1068)
....+....... +...+ ....||...|..+.||.++- |++++ |.+|++|++...+++..|. |.+.|||++|+|-|
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 000000100000 00000 01236999999999998874 55555 9999999999999999998 99999999999999
Q ss_pred CCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccC
Q 001490 832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 911 (1068)
Q Consensus 832 ~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 911 (1068)
.+++++|+-||.|+||++...+.+.-...+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+....
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 999999999999999999987776655544 7799999999999999999999999999998777666666655555444
Q ss_pred CCCceEEEEeeCCC--EEEEEeCCeEEEEECCCceeeeeeccCC-CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001490 912 APSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 987 (1068)
Q Consensus 912 ~~~v~~~~~spdg~--~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~ 987 (1068)
...|+.+.|.|... .|+++.|..|+|||..+...+..+...+ ...-....|+.||++|++++.|..|++|++....
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 45799999997654 7888999999999998888877755444 2334567899999999999999999999985544
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=235.94 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=240.5
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcce
Q 001490 296 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 375 (1068)
Q Consensus 296 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 375 (1068)
...|..+-..|.+|+..|.++++.|.|-+ +++|+.|-+|++||+..-..... .|+ . +.......|
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr------------~-l~P~E~h~i 217 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR------------Q-LQPCETHQI 217 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh------------c-cCccccccc
Confidence 45678888899999999999999999986 59999999999999975332211 111 1 122345689
Q ss_pred EEEEECCCCCEEEEEeCCcEEEEEEccCCCc---------ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490 376 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446 (1068)
Q Consensus 376 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~---------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 446 (1068)
.+++||+.|..|++.+.....+|+|-..-+. ++....-+||...++|.+|+|+.+. .++|++.||+++||
T Consensus 218 ~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 218 NSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIW 296 (641)
T ss_pred ceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEE
Confidence 9999999999999999999999999875433 2223345699999999999999987 79999999999999
Q ss_pred ECCCCce-eeEec-----cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce---EEecCCCC--cEEEEEEcc
Q 001490 447 DAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGL--GCTRMAYSA 515 (1068)
Q Consensus 447 d~~~~~~-~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~--~i~~~~~s~ 515 (1068)
|+...+. +..++ +..-++++++|++ ||..|++|+.||.|.+|+....... ..-..|.. .|++++||+
T Consensus 297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred ecCCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence 9876443 23332 2345678888865 8889999999999999997554332 23344544 899999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecCCCEEEEEE------CCCeEEEEEcCCCeE
Q 001490 516 NGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQL 588 (1068)
Q Consensus 516 d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~ 588 (1068)
||++|++-+. |..+++||++.. +++....+.. ....-+.++|+|+.+.|++|. ..|++++||..+...
T Consensus 375 dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 375 DGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred ccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 9999998765 667999999864 4454544433 224567789999999999975 457899999999999
Q ss_pred EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490 589 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 629 (1068)
Q Consensus 589 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 629 (1068)
+..+... ...|..+.|+|.-+.|++++.||++++|--.+
T Consensus 450 v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 450 VYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred EEEecCC--CceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 9998766 34588999999999999999999999975443
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=220.47 Aligned_cols=298 Identities=16% Similarity=0.246 Sum_probs=247.0
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
..+.+.|.||++.||.++...... ++.+++.|.+.+||.+++|.++.. +.||.+.|.++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 467788999999999999988766 889999999999999999999976 889999999999
Q ss_pred ECCCCCEEEEEeCCcEEEEEEc------cCC--------C----------------------cc-cceEEEccccccEEE
Q 001490 380 WSPDGSLLGVAYSKHIVQLYAY------HGG--------S----------------------DA-RQQLEIDAHVGNVND 422 (1068)
Q Consensus 380 ~spdg~~las~~~d~~i~vwd~------~~~--------~----------------------~~-~~~~~~~~h~~~v~~ 422 (1068)
|++.+.++++++.|++..||.. ... + .+ .+...+.+|...|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 110 0 01 124467899999999
Q ss_pred EEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec
Q 001490 423 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 502 (1068)
Q Consensus 423 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 502 (1068)
+.|...|+ .+++++-|.+..+||+++|..+..+.||....+.++-+| ..+++++.+.|.+.++||++.
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFRE-------- 345 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchh--------
Confidence 99999999 699999999999999999999999999999999998876 456888888888888887752
Q ss_pred CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEE
Q 001490 503 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 582 (1068)
Q Consensus 503 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 582 (1068)
.| ..+..|+||. ..|+++.|..+ ..+++|++|.+|++||
T Consensus 346 ----aI---------------------------------~sV~VFQGHt---dtVTS~vF~~d-d~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 346 ----AI---------------------------------QSVAVFQGHT---DTVTSVVFNTD-DRVVSGSDDRTVKVWD 384 (481)
T ss_pred ----hc---------------------------------ceeeeecccc---cceeEEEEecC-CceeecCCCceEEEee
Confidence 01 1234578888 89999999876 4689999999999999
Q ss_pred cCCC-eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceee----eccccccceeeeEEcCCcccccc
Q 001490 583 MNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD----AAGVLSDNLRKLSVNPISTVTGA 657 (1068)
Q Consensus 583 ~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~ 657 (1068)
+++. .++.++... .+++.++.+..++.++.--++..|++||+...+... .-++|...|.|++|....
T Consensus 385 LrNMRsplATIRtd---S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh----- 456 (481)
T KOG0300|consen 385 LRNMRSPLATIRTD---SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH----- 456 (481)
T ss_pred eccccCcceeeecC---CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC-----
Confidence 9875 466777654 347899999999999999999999999999765433 346888899999986432
Q ss_pred ccccCeeeecCCCCCCcccceeecccccceeecccc
Q 001490 658 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 693 (1068)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 693 (1068)
| -.-|++++.|..+.-|.+..
T Consensus 457 --------------p-~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 457 --------------P-ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred --------------c-ccccccccccceeeeeEecc
Confidence 1 24477888899999998764
No 92
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.7e-25 Score=247.17 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=185.3
Q ss_pred ecCCCcceEEEEECCC-CCEEEEEeCCcEEEEEEccCCCc-c----cceEEEccccccEEEEEEcCCCCcEEEEEEeCCC
Q 001490 368 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 441 (1068)
Q Consensus 368 l~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~-~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 441 (1068)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999997 89999999999999999986532 1 122357789999999999999874 567999999
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEE-----EEEccC
Q 001490 442 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 516 (1068)
Q Consensus 442 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~d 516 (1068)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.. ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999887776 667899999976 7789999999999999999999888888888765432 345689
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC
Q 001490 517 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 595 (1068)
Q Consensus 517 ~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 595 (1068)
+.++++++.++..++.|++||+++ ++++..+..+. ..+.+......+++.++++|+.|+.|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887655557899999985 55555543322 12333333344558888899999999999998764 3344333
Q ss_pred CCCCCCceEEEecCC
Q 001490 596 GGLPENPRICFNKNG 610 (1068)
Q Consensus 596 ~~~~~v~~v~~s~~~ 610 (1068)
....++..++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 344567889999964
No 93
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-26 Score=215.01 Aligned_cols=284 Identities=17% Similarity=0.246 Sum_probs=226.8
Q ss_pred eEEEEcC--CCCeEEEEEc-----CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-CC
Q 001490 314 MSMDFHP--VQHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GS 385 (1068)
Q Consensus 314 ~~v~~sp--dg~~lla~gs-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g~ 385 (1068)
.++.||| +++..+|++. ..|++.|-++..++-+.. +.-+| -++.+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence 5788998 3442333332 247899999975554432 22222 3568999999996 56
Q ss_pred EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001490 386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 465 (1068)
Q Consensus 386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 465 (1068)
.+++++.||++++||+... -.++..++.|...|.++.|++..++ .+++++-|++|++|+...++.++++.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7788899999999995433 3455578899999999999998776 677779999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC-CCEEEEEeeCCCCceeEEEEeCCCC-ee
Q 001490 466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEG-AI 543 (1068)
Q Consensus 466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~wd~~~~-~~ 543 (1068)
...|+|. ...+++++|.|+++++||++.......+..|...+.++.|+.- .+.+++++. ++.|+.||+++- .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 9999986 5569999999999999999998888889999999999999984 455666654 778999999864 55
Q ss_pred eeEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCCe-EEEEEeCCCCCCCCceEEEec-CCCEEEEEECCC
Q 001490 544 KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANEN 620 (1068)
Q Consensus 544 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg 620 (1068)
+..+.+|. -.|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...| ..-+..+.||+ ++.++|+.+-|+
T Consensus 227 l~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 227 LFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred ceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeeccccc
Confidence 77778887 899999999975 466779999999999998543 44445544 34577888888 678999999999
Q ss_pred eEEEEEC
Q 001490 621 RIKILET 627 (1068)
Q Consensus 621 ~i~iwd~ 627 (1068)
.++||+-
T Consensus 302 ~l~Vw~p 308 (311)
T KOG0277|consen 302 LLYVWNP 308 (311)
T ss_pred ceeeecc
Confidence 9999983
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.3e-25 Score=214.99 Aligned_cols=275 Identities=18% Similarity=0.236 Sum_probs=219.9
Q ss_pred CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCC-CcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEE
Q 001490 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 388 (1068)
Q Consensus 310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~la 388 (1068)
.+.|.+++|||....+++.||.||+||+|+++. |..+.. ....|.++|.+++|+.||..++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------a~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------AQQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccch------------------hhhccCCCeEEEEEccCCceEE
Confidence 568999999996666888999999999999986 443321 1446899999999999999999
Q ss_pred EEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001490 389 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 468 (1068)
Q Consensus 389 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 468 (1068)
+|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+..|+||+-|++|+.||.+...++.++. -.+.++++.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred eeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence 9999999999999998533 46689999999999887766689999999999999999999988886 556777775
Q ss_pred eeecCCccEEEEEEcCCcEEEEeCCCCCceEEec--CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--eee
Q 001490 469 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIK 544 (1068)
Q Consensus 469 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~ 544 (1068)
. --.+++.+..+..|.+|++++........ .-.-.+++++..+|....+.|+- +|.+.+..+..+ +.-
T Consensus 164 v----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 164 V----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDN 235 (347)
T ss_pred c----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCc
Confidence 4 22488999999999999997655443221 12236889999998888888876 556777766665 445
Q ss_pred eEEeccccc------cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490 545 RTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 617 (1068)
Q Consensus 545 ~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 617 (1068)
.+|+.|... ...|++++|+|....|++++.||++.+||-.....+...+.+ ..+|.+.+|+.+|.++|.+.
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 566666631 245788999999999999999999999998877777666544 35699999999999888654
No 95
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=6.9e-26 Score=223.53 Aligned_cols=281 Identities=16% Similarity=0.204 Sum_probs=233.2
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCC-cEEEEEEeCCCcEEEEEC
Q 001490 370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA 448 (1068)
Q Consensus 370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~~~l~s~~~d~~i~iwd~ 448 (1068)
-|.+.|.++... ++.+++|+.||++++||..... . ..+.||.++|.+++|.-.+. .-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~---~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-I---KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCce-E---EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 478889998888 8899999999999999998742 2 36789999999888843322 115999999999999998
Q ss_pred CCCcee----eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC-------------------------CCCceE
Q 001490 449 VTGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV 499 (1068)
Q Consensus 449 ~~~~~~----~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~-------------------------~~~~~~ 499 (1068)
+.+... ..-.||...|.++...+ +|..+++|+.|.+|++|+.. +..++.
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 877543 33459999999998754 77899999999999999831 122445
Q ss_pred EecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEE
Q 001490 500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 579 (1068)
Q Consensus 500 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 579 (1068)
.+.+|..+|.++.|++ ...+++++. |.+|+.||+.++..+..+.+. ..+.++..+|..+.|++|+.|..|+
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence 6788888999999988 667778876 778999999999998888774 4899999999999999999999999
Q ss_pred EEEcCCCe---EEEEEeCCCCCCCCceEEEec-CCCEEEEEECCCeEEEEECCCCc-eeeeccccccceeeeEEcCCccc
Q 001490 580 IWDMNKVQ---LLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV 654 (1068)
Q Consensus 580 iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 654 (1068)
+||.+++. ..+.+.+| ...|.++.|+| +..+|++++.|+++++||+++.. ++..+.+|.+.|.++.++
T Consensus 326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~----- 398 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN----- 398 (423)
T ss_pred ecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence 99998763 23445544 55799999999 55678899999999999999887 899999999999999886
Q ss_pred cccccccCeeeecCCCCCCcccceeecccccceeeccc
Q 001490 655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 692 (1068)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 692 (1068)
++..+++|+.|.+++++...
T Consensus 399 ------------------~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 ------------------EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ------------------CCceEEeccCcceEEEeccc
Confidence 57789999999999998743
No 96
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=214.78 Aligned_cols=311 Identities=13% Similarity=0.164 Sum_probs=233.4
Q ss_pred eeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCC--cccceeecCCcccc
Q 001490 633 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKA 710 (1068)
Q Consensus 633 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~ 710 (1068)
+..+++|...|++++|+ .||+++++++.|++|++|++..-.. .++..... ..
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~ 132 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EY 132 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cC
Confidence 34678999999999996 7899999999999999999764222 22222222 23
Q ss_pred ccEEEEEEecCCceEEEee-cCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001490 711 NKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 789 (1068)
Q Consensus 711 ~~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 789 (1068)
+..+.+.|+||-+.++... ....+++|.+...+. |.... ...-||-. . + ...|.-.+..+-...+
T Consensus 133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~------~--f-~~kh~v~~i~iGiA~~ 198 (420)
T KOG2096|consen 133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNL------E--F-ERKHQVDIINIGIAGN 198 (420)
T ss_pred CCceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--cccccccc------c--c-chhcccceEEEeecCC
Confidence 4678899999987766554 456899998765432 11110 11112200 0 0 0126667778888889
Q ss_pred CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcC---Cc-----eeeeeecc
Q 001490 790 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---SS-----EVISKLEG 860 (1068)
Q Consensus 790 g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~---~~-----~~~~~~~~ 860 (1068)
+++|++++ |..|.+|++. |+.+..+......-+..+.|| +|++||+++.--.|++|.+- .| ..+..++|
T Consensus 199 ~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred ceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 99999998 6789999999 999998887777788899999 99999999988899999873 23 24567899
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee--eeeeecCCCcc-cCCCCceEEEEeeCCCEEEEEeCCeEEE
Q 001490 861 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQTPDGVM-TLAPSETHIQFHKDQTRFLLVHETHLAI 937 (1068)
Q Consensus 861 h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~-~~~~~v~~~~~spdg~~la~~~d~~i~v 937 (1068)
|...|..++||++.+.++|.|.||+++|||++-..... ...++...... ...+.-..++.||.|+.||++....+++
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~ 356 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKV 356 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEE
Confidence 99999999999999999999999999999987432211 12222221111 1112344899999999999999999999
Q ss_pred EECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001490 938 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 986 (1068)
Q Consensus 938 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~ 986 (1068)
|..++|+....+...|...|++++|++||++++|++ |..++|..-..|
T Consensus 357 ~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 357 FASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred EEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 999999988887888999999999999999999986 788888764333
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=231.05 Aligned_cols=285 Identities=17% Similarity=0.240 Sum_probs=240.8
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998876 223336778889999999999999 788899999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 527 (1068)
+...+...++.||.+.|+++.|.-.. ..+++|+.|.+|+.||+....+...+.. ...+..|+.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc--
Confidence 99999999999999999999986543 2499999999999999988666554432 2344555554 455666665
Q ss_pred CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCC--CCCCceEE
Q 001490 528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 605 (1068)
Q Consensus 528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 605 (1068)
|..|+.||.++.........+ +.|+++..++++..+++.+.|.++.+.|+++......+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 556999999999998888775 4899999999999999999999999999999998888865432 23478899
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCceeeeccccccc--eeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccc
Q 001490 606 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 683 (1068)
Q Consensus 606 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 683 (1068)
|||++.++++|+.||.|+||++.+++....+...... |++++|+ |.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999988887766555 8989886 568889999999
Q ss_pred ccceeec
Q 001490 684 NKSEVEK 690 (1068)
Q Consensus 684 ~~i~~wd 690 (1068)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9999983
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.7e-24 Score=196.46 Aligned_cols=300 Identities=15% Similarity=0.222 Sum_probs=234.0
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEcc------CCCcc--cc----eEEEccccccEEEEEEcCCCCcEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH------GGSDA--RQ----QLEIDAHVGNVNDLAFSAPCKQISVI 435 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~------~~~~~--~~----~~~~~~h~~~v~~l~~s~d~~~~~l~ 435 (1068)
.-.....|.+++|+|.|.+.|+|+..++.+|--.. .+... .+ ...-+.|.+.|.|.+|||+|+ +++
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--lia 105 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIA 105 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEE
Confidence 44567899999999999999999999998876432 22110 00 112346889999999999999 999
Q ss_pred EEeCCCcEEEEECCCCce--e---eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEE
Q 001490 436 TCGDDKTIKVWDAVTGSR--T---YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 510 (1068)
Q Consensus 436 s~~~d~~i~iwd~~~~~~--~---~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 510 (1068)
+|+.|++|++.......+ . ..+.-|.+.|..++|...+.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~------------------------------------ 149 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE------------------------------------ 149 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC------------------------------------
Confidence 999999999875543222 1 23444666666666543221
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q 001490 511 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 590 (1068)
Q Consensus 511 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 590 (1068)
..+..|++++. |+..|++-|..+|+....+.+|. +.|.++ ++=++-++++|+.|.+|++||++-...+.
T Consensus 150 ----s~~~il~s~ga---gdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 150 ----SGGAILASAGA---GDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred ----cCceEEEecCC---CcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceee
Confidence 23456666553 68889999999999999999998 777765 44467889999999999999999988888
Q ss_pred EEeCCCC-----CCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeee
Q 001490 591 TIDAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 665 (1068)
Q Consensus 591 ~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 665 (1068)
++....+ ...|.+++..|.|++|++|-.|....+||++.++.++.+..|...|.++.|+
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs---------------- 282 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS---------------- 282 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC----------------
Confidence 7753221 2458899999999999999999999999999999999999999999999996
Q ss_pred ecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEecc
Q 001490 666 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 740 (1068)
Q Consensus 666 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 740 (1068)
|...++++++.|..|++-|+...-..+........ |...+-.+.|.|..-.+++.+.|.++.+|.++
T Consensus 283 ------p~a~yllt~syd~~ikltdlqgdla~el~~~vv~e--hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 283 ------PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE--HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ------CCceEEEEecccceEEEeecccchhhcCceEEEEe--ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 66789999999999999998754444433333333 78888889999999999999999999999753
No 99
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=9.1e-25 Score=244.65 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=210.6
Q ss_pred CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcc----------cceEEEccccccEEEEEEcC-CCCcEEEEEEeC
Q 001490 371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 439 (1068)
Q Consensus 371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~ 439 (1068)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3446666777788777777777777777776554321 11224679999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEE
Q 001490 440 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 512 (1068)
Q Consensus 440 d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 512 (1068)
|++|++||+.++ ..+..+.+|...|.+++|+|.. +.+|++++.|++|++||+.+......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999888888888999999999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE----CCCeEEEEEcCCCe-
Q 001490 513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 587 (1068)
Q Consensus 513 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 587 (1068)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ......+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999886 6679999999999998888876 22345678899888888754 47999999998754
Q ss_pred EEEEEeCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEECCCCceeeeccc-cccceeeeEEcC
Q 001490 588 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 650 (1068)
Q Consensus 588 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~ 650 (1068)
++.....+. ...+....|++++.++++++ .|+.|++||+.++..+..... ....+.++++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 343333322 23355667899999999887 499999999998876655433 233455555554
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.1e-25 Score=210.49 Aligned_cols=243 Identities=19% Similarity=0.271 Sum_probs=204.2
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCC--EEEEEECCCeEEEEEc
Q 001490 773 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNA 849 (1068)
Q Consensus 773 ~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~ 849 (1068)
....|...++++|+ ++.|+|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ .-. .|.+|+.||.|.+|+.
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEc
Confidence 33469999999998 689999998 89999999999999999999999999999998 554 8999999999999999
Q ss_pred CCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE
Q 001490 850 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 929 (1068)
Q Consensus 850 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 929 (1068)
.+.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-+|+......+.. ..+.+.|+|.|.++++
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVV 185 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEE
Confidence 9999999999999999999999999999999999999999999877444222222 2345999999999999
Q ss_pred EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccc
Q 001490 930 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1009 (1068)
Q Consensus 930 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1068)
+..+.|-+|.+++-........ +.++.++.|. ++.+|++|+.|+.|.+||.+++.+.+.+. .|...+..
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~ 254 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKD 254 (362)
T ss_pred EeccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheee
Confidence 9999999999988776654332 3556666665 55688999999999999999988887777 23445555
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490 1010 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus 1010 ~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
+..--.| ++.+|++++.||.|++||+...
T Consensus 255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 5544566 6789999999999999999755
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-26 Score=227.61 Aligned_cols=293 Identities=11% Similarity=0.163 Sum_probs=235.1
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
++-+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+.++... +..|.+.|..++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC 116 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence 4456678999999999999998845789999999999999999888765 678999999999
Q ss_pred ECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001490 380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 459 (1068)
Q Consensus 380 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 459 (1068)
+.. ..+++++.|++|+.|.++.. ..+ ++.+ ...+..+.-+..+. .++|||.+ |.|||.....++..+.-
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smsw 185 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSW 185 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeec
Confidence 987 67788889999999998873 222 3333 23456666655566 68888764 99999999999999988
Q ss_pred CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001490 460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 539 (1068)
Q Consensus 460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~ 539 (1068)
-...|.++.|+|.+. ..|+++..|+.|.+||++....+...... ...+.++|+|.+-.++++.. |..++.+|++
T Consensus 186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence 889999999988744 58888899999999999988876644322 24467899996666666653 7789999987
Q ss_pred C-CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490 540 E-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 618 (1068)
Q Consensus 540 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 618 (1068)
. ..++..+.+|. ..|..+.|+|.|+-+++||.|.+|+||..+.+......-. .....|.++.||.|.+++++|++
T Consensus 260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCC
Confidence 5 34566666766 8999999999999999999999999999988765433321 12345899999999999999999
Q ss_pred CCeEEEEECCCCce
Q 001490 619 ENRIKILETPESNS 632 (1068)
Q Consensus 619 dg~i~iwd~~~~~~ 632 (1068)
|+.|++|.....+.
T Consensus 336 d~nvRlWka~Asek 349 (433)
T KOG0268|consen 336 DGNVRLWKAKASEK 349 (433)
T ss_pred Ccceeeeecchhhh
Confidence 99999999775433
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.6e-26 Score=239.08 Aligned_cols=242 Identities=21% Similarity=0.259 Sum_probs=206.8
Q ss_pred EEEEC-CCCCEEEEEeCCcEEEEEEccCCCcc---cceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-
Q 001490 377 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 451 (1068)
Q Consensus 377 ~~~~s-pdg~~las~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~- 451 (1068)
.+..+ |.++||.+|+.||.|++|++...... .....+..|.+.|+.++...+++ .|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 46788999999999999998754431 12336778999999999999999 7999999999999999887
Q ss_pred -ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc--eE--------Eec-CCCCcEEEEEEccCCCE
Q 001490 452 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 519 (1068)
Q Consensus 452 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~d~~~ 519 (1068)
-+..++..|...|.++++.. .+...+++|+-|+.|.+||+.++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 67788899999999999842 3557999999999999999997633 11 122 45568999999999988
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCC
Q 001490 520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 599 (1068)
Q Consensus 520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 599 (1068)
+++|+. ++.+++||.++++.+..++||. ..|..+..++||.+++++|.||+|++||+...+++.++..|..
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 888876 4459999999999999999999 9999999999999999999999999999999999999987754
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 600 ENPRICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 600 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
.|+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 4999999999999999999999999888764
No 103
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.2e-23 Score=227.54 Aligned_cols=567 Identities=12% Similarity=0.116 Sum_probs=352.3
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCc-EEEEEEeCCCcEEEEE
Q 001490 369 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWD 447 (1068)
Q Consensus 369 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~-~~l~s~~~d~~i~iwd 447 (1068)
.|-...-..-.||+|++++..+. +..|.||.+.+|+++. .+.+|..++..+.+.|.... .++.+++.||.|++||
T Consensus 13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence 33333334456999999998775 5569999999999887 78899999999999887663 4788999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeeeec-CCccEEEEEE-cC------------CcEEEEeCCCCCce-EEecCCCCcEEEEE
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAK-ENIHFIFSIS-VD------------GKIKAWLYDSLGAR-VDYDAPGLGCTRMA 512 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~-~~~~~l~s~s-~d------------g~i~vwd~~~~~~~-~~~~~~~~~i~~~~ 512 (1068)
...+..++++..+. ++..+.+.+. -+....+..+ .| ++++-+.+.+.... ..+......-.++.
T Consensus 89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 99999998886433 2333222110 0000111111 11 11111111111100 00111111135678
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCeee-eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC--CeEE
Q 001490 513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL 589 (1068)
Q Consensus 513 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~ 589 (1068)
+++.|.+...+. +..+.+|+..++... .....+..|...+++.+++|+++++++|..||.|.+|.--. +...
T Consensus 168 ~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 168 DNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred EcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 888888877766 345889988875511 11111122235589999999999999999999999996433 3322
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCC
Q 001490 590 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 669 (1068)
Q Consensus 590 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1068)
..-..|-|...|.+++|+++|.+|++|+..+.+.+|.+.+++. +-+..
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPR------------------------------- 290 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPR------------------------------- 290 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-ccccc-------------------------------
Confidence 2222334456799999999999999999999999999998741 11110
Q ss_pred CCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCcc
Q 001490 670 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 749 (1068)
Q Consensus 670 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 749 (1068)
-...|..+.+|||+...+....|+.|.+-....-....
T Consensus 291 ---------------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--- 328 (792)
T KOG1963|consen 291 ---------------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--- 328 (792)
T ss_pred ---------------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh---
Confidence 23567888899999988888888888887654322100
Q ss_pred ceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEeCCeEEEEEccCceeEEEec-----CCC----
Q 001490 750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS---- 819 (1068)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~~dg~i~iwd~~~~~~~~~~~-----~~~---- 819 (1068)
.+.-..+.+.. . ......-.+.++++|- +..+.-+-.|.|++||+.+.+.+..+. .+.
T Consensus 329 -----tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 329 -----TISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred -----hccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 01111111000 0 0113455677888884 444444447999999998877665543 122
Q ss_pred --CCeEEEEEeCCCCCEEEEEE--------CCC--eEEEEEcCCcee----e-eeecccccCeEEEEEcC-CC-CEEEEE
Q 001490 820 --PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----I-SKLEGHSKRVTGLVFSD-AL-NILVSS 880 (1068)
Q Consensus 820 --~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~----~-~~~~~h~~~V~~l~~sp-dg-~~l~s~ 880 (1068)
-.+++++.+- .|.+++|+- .|| .+++|-...... . .....|...+...+|.+ .. .+++++
T Consensus 397 ~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 397 IQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred eEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence 2578888888 699999863 333 677887654332 2 22245877777666654 23 389999
Q ss_pred eCCCcEEEEECCCCcee-----eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCc
Q 001490 881 GGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 955 (1068)
Q Consensus 881 s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~ 955 (1068)
+.||.++||-+...+.. ...+.....-|. .+++.++||.||..|+++.++.|.+||..+...+.........
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~ 552 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNW 552 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccccc
Confidence 99999999998543221 122222222233 3789999999999999999999999999984333222333344
Q ss_pred CEEEEEEec----CCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCC--------C-CccCcccceEEEECCCCCCEE
Q 001490 956 PISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP--------T-TSCLHVYPHAIAAHPLKPTQF 1022 (1068)
Q Consensus 956 ~v~~l~fs~----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~p~~~~~l 1022 (1068)
++..+.|.. ++. +.....+.+.+|++-+..+...+........ . ...+...-.-+++.| ..+
T Consensus 553 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~~~ 627 (792)
T KOG1963|consen 553 PIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---ELL 627 (792)
T ss_pred chHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---cch
Confidence 555555543 333 2233567899999999988874332222111 0 001111112244555 233
Q ss_pred E--------EEeCCCcEEEEeCCCCC
Q 001490 1023 A--------VGLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus 1023 ~--------~~~~dg~i~~w~~~~~~ 1040 (1068)
. ..+.|+.|.+|+....+
T Consensus 628 ~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 628 LVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred hhhhhhhhhcccccceEEEecCCCch
Confidence 3 77788888888875444
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=5e-25 Score=233.94 Aligned_cols=285 Identities=18% Similarity=0.293 Sum_probs=241.1
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE-E
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-V 378 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-~ 378 (1068)
..+.+.|.||...|..+++.+.. .+++++.||++++|+-..++-+.... +.+|.+-|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~-----------------~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHA-----------------FEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCccccccee-----------------cccCcceeeccc
Confidence 45778999999999999998876 46899999999999987776664322 5567777777 7
Q ss_pred EECC-CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001490 379 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 457 (1068)
Q Consensus 379 ~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 457 (1068)
++-+ ++-+|++|+.|++|.+|.......+. .+.+|...|.+++...++. +++|+-|.++++|- .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 7775 55679999999999999999987666 7889999999999887775 89999999999996 46677789
Q ss_pred ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490 458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 537 (1068)
Q Consensus 458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 537 (1068)
.+|...|++++..+.. .+++||.|.+|++|. .++...++.+|..-|+.+++-+++.+ ++|+. |+.|++|+
T Consensus 137 ~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEe
Confidence 9999999999887643 899999999999994 57788899999999999999887665 45554 77899999
Q ss_pred CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490 538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 617 (1068)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 617 (1068)
+ +|+.+..+.+|. .-++++....++..++++++|++++||+.. .+.+.+..+.. .|+++.+-++|. +++|+
T Consensus 207 ~-~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~ 277 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGG 277 (745)
T ss_pred c-cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEec
Confidence 8 889999999999 899999988888899999999999999976 77777776543 488888888885 77889
Q ss_pred CCCeEEEEECCCC
Q 001490 618 NENRIKILETPES 630 (1068)
Q Consensus 618 ~dg~i~iwd~~~~ 630 (1068)
+||.|+||.....
T Consensus 278 SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 278 SDGRVRVFTVDKD 290 (745)
T ss_pred cCceEEEEEeccc
Confidence 9999999998744
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.3e-25 Score=223.05 Aligned_cols=250 Identities=21% Similarity=0.287 Sum_probs=214.0
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceE-------------EE--ccccccEEEEEEcCCCCcE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL-------------EI--DAHVGNVNDLAFSAPCKQI 432 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~-------------~~--~~h~~~v~~l~~s~d~~~~ 432 (1068)
+..|.-+|.+|+++||+++..+++.+++|.=|++.+|+..+... .. .+|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 55699999999999999999999999999999999887431100 01 37888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEE
Q 001490 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 512 (1068)
Q Consensus 433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 512 (1068)
+|++|+.|..|.|||.++.+.++.+++|.+.|.+++|... ...|++++.|+.|++|+++......++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 8999999999999999999999999999999999999754 35899999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001490 513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592 (1068)
Q Consensus 513 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 592 (1068)
...-++.+-+++. |.++++|++.. +....|.++. +.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888888777765 77899999943 4445677776 88999999755 57899999999999999999988776
Q ss_pred eCCCCC----------CCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 593 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 593 ~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
....+. ..|++++..|...++++|+.+|.|++|-+.++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 532211 15778999999999999999999999998876
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.4e-25 Score=247.73 Aligned_cols=279 Identities=17% Similarity=0.241 Sum_probs=242.0
Q ss_pred CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC
Q 001490 371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 450 (1068)
Q Consensus 371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 450 (1068)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|.+++|..-+. ++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56788888888 66889999999999999999876552 3889999999999987555 899999999999999999
Q ss_pred CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490 451 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 451 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
|.+.+++.+|...|.++.. ....+++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 9999999999999999976 33578889999999999999999999999999999999987 889999987 5
Q ss_pred eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC-eEEEEEeCCCCCCCCceEEEecC
Q 001490 531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN 609 (1068)
Q Consensus 531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~ 609 (1068)
+.|.+||+.++++++.+.+|. ..|.++.+.+. +.+++|+.|++|++||+++. +++..+..|... +..+ ...
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--ccc
Confidence 679999999999999999988 99999988765 89999999999999999999 899998877543 3333 345
Q ss_pred CCEEEEEECCCeEEEEECCCCceeeeccc-cccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490 610 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 688 (1068)
Q Consensus 610 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~ 688 (1068)
+++|++++.|++|++||..++..+..+.+ +...+..++.. ...+++++.|+++++
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL 478 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence 78999999999999999999999999998 56666655542 356788999999999
Q ss_pred ecccccCCc
Q 001490 689 EKPLFARPS 697 (1068)
Q Consensus 689 wd~~~~~~~ 697 (1068)
||+......
T Consensus 479 ~dl~~~~~~ 487 (537)
T KOG0274|consen 479 WDLRSGTLI 487 (537)
T ss_pred EecccCchh
Confidence 998755443
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7.4e-25 Score=209.88 Aligned_cols=274 Identities=16% Similarity=0.167 Sum_probs=215.9
Q ss_pred cCCCcceEEEEECC-CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 369 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 369 ~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
...++.|.+++||| ...++++++.|++|++|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 455666889999999999987422222 24567999999999999998 799999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 527 (1068)
+.+++ +..+..|.++|..+.|.+..+-..|++||.|++|+.||.+....+..+...+ .+.++.. -..+++++..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5567789999999999887777799999999999999999888887776655 3333332 2334555554
Q ss_pred CCceeEEEEeCCCCeee-eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC--eEEEEEeCCCC-------
Q 001490 528 EGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------- 597 (1068)
Q Consensus 528 ~~~~~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------- 597 (1068)
+..|.+|+++++... +.....- +..+++++...+....+.|+-+|.+.|-.+..+ +.-..++.|..
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 556999999765432 2222221 356899999999888899999999999999886 33344444442
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccc
Q 001490 598 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 655 (1068)
Q Consensus 598 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 655 (1068)
...|++++|+|....|++++.||++.+||-.....+...+.+..+|++..|+.++...
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIF 308 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEE
Confidence 3357889999999999999999999999999888888889999999999998665544
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=235.88 Aligned_cols=352 Identities=18% Similarity=0.220 Sum_probs=262.7
Q ss_pred CCCCce---EEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC
Q 001490 309 GSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 385 (1068)
Q Consensus 309 h~~~V~---~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~ 385 (1068)
|...|. .+..++.+.++|.+|+.||.|++|++..-....... -...+..|.+.|..++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCC
Confidence 444555 566665555578999999999999986533221100 0112667999999999999999
Q ss_pred EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEE-cCCCCcEEEEEEeCCCcEEEEECCCCc--eee-------
Q 001490 386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTY------- 455 (1068)
Q Consensus 386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~------- 455 (1068)
.|++++.|-+|++|+...+. ......+..|.+.|.|++. -++.. ++|+||-|+.|.+||+.+|. .+.
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 2223367789999999999 66666 89999999999999999883 222
Q ss_pred -Eec-cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490 456 -SFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 533 (1068)
Q Consensus 456 -~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 533 (1068)
.+. |+..+|++++..+ +|..+++|+..+.+++||.++.+....+.+|...|..+-.++||+.+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 233 7889999998855 6679999999999999999999999999999999999999999999999986 7789
Q ss_pred EEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEE
Q 001490 534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 613 (1068)
Q Consensus 534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 613 (1068)
++||+...+++.++..|. ..|+++..+|+-..+++|+.||.|+.=|+++......+-.+. .+|..+..+...+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~ 312 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSV 312 (735)
T ss_pred EeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCc
Confidence 999999999999999988 779999999999999999999999999998853333332221 246777777655555
Q ss_pred EEEECCCeEEEEECCCCceeeecccc-------ccceeeeEEcCCccccccccccCeeee-cCCCCCCcccceeeccccc
Q 001490 614 AVIANENRIKILETPESNSVDAAGVL-------SDNLRKLSVNPISTVTGAGIANGSVSV-NEDPKEDVKPEISVEAENK 685 (1068)
Q Consensus 614 ~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d~~ 685 (1068)
-+++.|+.|+-|...-...+...... ...+.+....|+...- |..++ ......|.+.+++-...|.
T Consensus 313 WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~------Gg~ai~k~~mL~dkRhVlTkDa~gn 386 (735)
T KOG0308|consen 313 WVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIP------GGAAIKKHAMLNDKRHVLTKDAKGN 386 (735)
T ss_pred eeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceecc------CchhhhhhhhhcCcceEeeecCCCC
Confidence 78888999999987643222111110 0011111111111111 11111 1111467889999999999
Q ss_pred ceeecccc
Q 001490 686 SEVEKPLF 693 (1068)
Q Consensus 686 i~~wd~~~ 693 (1068)
+.+||+-.
T Consensus 387 v~lwDIl~ 394 (735)
T KOG0308|consen 387 VALWDILA 394 (735)
T ss_pred EEEEEeee
Confidence 99999653
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2e-24 Score=216.72 Aligned_cols=285 Identities=16% Similarity=0.185 Sum_probs=244.3
Q ss_pred CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 389 (1068)
Q Consensus 310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las 389 (1068)
...+.++...|... .+.||+.|..+.++|..+++.+.. ++||...|..+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence 34788888888744 679999999999999999998865 8899999999999999999999
Q ss_pred EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc--CCCcEEEE
Q 001490 390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSL 467 (1068)
Q Consensus 390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i 467 (1068)
++.|..|+||......... ....|..+|+.+..+|.|+ |+++++.|++..+.|+++|..+..... ..-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998765433 5678999999999999999 899999999999999999998876643 23447888
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 547 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 547 (1068)
+|+| ||.++.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|+++.. |+.|++||++.-+..+++
T Consensus 354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence 9987 7889999999999999999999999999999999999999999999999986 556999999988888888
Q ss_pred eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490 548 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 627 (1068)
Q Consensus 548 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 627 (1068)
.... ...+.++.|.+.|.+++.++.|=.|++++-.+.........+.+......+.|....+++++++.|..++++.+
T Consensus 428 ~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7655 45799999999999999998888888887655544333333333345788999999999999999999888754
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=218.10 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=242.8
Q ss_pred cceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001490 373 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 452 (1068)
Q Consensus 373 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 452 (1068)
..+.++...|....+++|+.|.++.++|..+++.+. .++||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999987666 7889999999999999998 89999999999999998888
Q ss_pred eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC--CCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
.......|.++|+.+..++ +|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888889999999999887 6679999999999999999999887766553 346899999999999999876 7
Q ss_pred eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490 531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 610 (1068)
Q Consensus 531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 610 (1068)
+.+++||+.++..+..|.+|. ++|..+.|+.+|.+++++++|+.|++||++..+...++...... ++.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 789999999999999999988 99999999999999999999999999999999988888876654 68999999999
Q ss_pred CEEEEEECCCeEEEEECCCC--ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490 611 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 688 (1068)
Q Consensus 611 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~ 688 (1068)
.+|+.++.|=.|++++-.+. ..+..+..|.+..+++.|. ...+++++++.|...++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 99999988777777764443 4455555666666666664 55678888888887776
Q ss_pred ec
Q 001490 689 EK 690 (1068)
Q Consensus 689 wd 690 (1068)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 54
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.4e-26 Score=222.11 Aligned_cols=284 Identities=14% Similarity=0.224 Sum_probs=235.0
Q ss_pred EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEe
Q 001490 412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 491 (1068)
Q Consensus 412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd 491 (1068)
.+.||.+.|.|++=+|..-. .+++|+.||.|+|||+.+..++.+++.|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998732 799999999999999999999999999999999999865 4799999999999998
Q ss_pred CCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE
Q 001490 492 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 571 (1068)
Q Consensus 492 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 571 (1068)
++.. ...++. ....+..+.-+..+..+++|+. .|.|||.....++..+.-.. ..|.++.|+|....|+.
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7663 222332 2234555666666778888875 49999999888888888666 78999999998776655
Q ss_pred -EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC-ceeeeccccccceeeeEEc
Q 001490 572 -AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 649 (1068)
Q Consensus 572 -~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~ 649 (1068)
++.|+.|.+||++++.+++.+..... -+.++|+|++-.++++..|..++.+|+... .++....+|...|..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 56999999999999999988876544 478999998888999999999999999865 5677788898888888886
Q ss_pred CCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEee
Q 001490 650 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 729 (1068)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 729 (1068)
|.|+-+++|+.|.+||+|.............. .-..|.++.||-|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence 67889999999999999998755444333222 334689999999999999999
Q ss_pred cCccEEEEeccC
Q 001490 730 SNGVHLMWRWPR 741 (1068)
Q Consensus 730 ~dg~i~iw~~~~ 741 (1068)
.|+.|++|.-..
T Consensus 335 dd~nvRlWka~A 346 (433)
T KOG0268|consen 335 DDGNVRLWKAKA 346 (433)
T ss_pred CCcceeeeecch
Confidence 999999998654
No 112
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.5e-25 Score=234.26 Aligned_cols=275 Identities=20% Similarity=0.246 Sum_probs=237.6
Q ss_pred EEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490 376 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 455 (1068)
Q Consensus 376 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 455 (1068)
.-+.|| ....||+|. ...|++|+..++.... + ...+...|+++.|+++|. +|+.|..+|.|.|||..+.+.+.
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence 346788 455677774 4469999999987332 2 223378999999999999 89999999999999999999999
Q ss_pred Eecc-CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE-ecCCCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490 456 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 533 (1068)
Q Consensus 456 ~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 533 (1068)
.+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... +..|...|..+.|++|++++++++. |+.+
T Consensus 254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~ 325 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV 325 (484)
T ss_pred cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence 9998 99999999995 45899999999999999998887666 7889999999999999999999986 7789
Q ss_pred EEEeCCCCeeeeEEeccccccCCeEEEEEecCC-CEEEE--EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490 534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 610 (1068)
Q Consensus 534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 610 (1068)
.|||.....++..+..|. ..|.+++|+|-. ..|++ |+.|+.|++||..++..+..+... ..|..+.|++..
T Consensus 326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKY 399 (484)
T ss_pred EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCC
Confidence 999998889999999998 999999999964 45566 458999999999999999988765 348999999988
Q ss_pred CEEEE--EECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490 611 TLLAV--IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 688 (1068)
Q Consensus 611 ~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~ 688 (1068)
+-|++ |..++.|.||+..+.+.+..+.+|...|..++++ |||..+++++.|.++++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRF 457 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEe
Confidence 76665 4457899999999999999999999999999996 78999999999999999
Q ss_pred ecccc
Q 001490 689 EKPLF 693 (1068)
Q Consensus 689 wd~~~ 693 (1068)
|++-.
T Consensus 458 w~~f~ 462 (484)
T KOG0305|consen 458 WNLFD 462 (484)
T ss_pred ccccC
Confidence 99764
No 113
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.7e-25 Score=204.05 Aligned_cols=284 Identities=15% Similarity=0.207 Sum_probs=226.5
Q ss_pred eEEEEECCC-CCEEEEE-------eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490 375 VNRVVWSPD-GSLLGVA-------YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446 (1068)
Q Consensus 375 V~~~~~spd-g~~las~-------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 446 (1068)
=.++.|||= ..+||++ ...|.+.|-++..++.+.....+ ...+.+..++|++.... .+++++.||++++|
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~-~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHEN-QVIAASGDGSLRLF 88 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcc-eEEEEecCceEEEe
Confidence 357889992 3344433 24688999999766655544444 34667999999998776 67788889999999
Q ss_pred ECCC-CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCEEEEEe
Q 001490 447 DAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCG 524 (1068)
Q Consensus 447 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 524 (1068)
|+.. ..+++.++.|...|.++.+... +++.++++|.|++|++|+......+.++.++...|....|+| .++.+++++
T Consensus 89 d~~~~s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 89 DLTMPSKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred ccCCCCcchhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 9643 4578899999999999999876 456777779999999999999999999999999999999999 556777776
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCC-eEEEEEeCCCCCCCCc
Q 001490 525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENP 602 (1068)
Q Consensus 525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~ 602 (1068)
. ++.+++||++.......+..|. ..+.++.|+.-. +.+++|+.|+.|++||++.- .++..+.+| .-.|.
T Consensus 168 g----d~~l~lwdvr~~gk~~~i~ah~---~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh--~~AVR 238 (311)
T KOG0277|consen 168 G----DGTLRLWDVRSPGKFMSIEAHN---SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH--GLAVR 238 (311)
T ss_pred C----CceEEEEEecCCCceeEEEecc---ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC--ceEEE
Confidence 4 7889999998755445577776 899999999754 56677999999999999874 456666544 45699
Q ss_pred eEEEecC-CCEEEEEECCCeEEEEECCCC-ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceee
Q 001490 603 RICFNKN-GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 680 (1068)
Q Consensus 603 ~v~~s~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 680 (1068)
.+.|||. ..+|++++.|-+++|||...+ ..+.+...|.+-+..+.+++ -++.++++.
T Consensus 239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~---------------------~~~~~vAs~ 297 (311)
T KOG0277|consen 239 KVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL---------------------FDPGQVAST 297 (311)
T ss_pred EEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc---------------------ccCceeeec
Confidence 9999994 568999999999999999844 55666677788787777773 367789999
Q ss_pred cccccceeecc
Q 001490 681 EAENKSEVEKP 691 (1068)
Q Consensus 681 ~~d~~i~~wd~ 691 (1068)
+-|+.+.+|+.
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999984
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.8e-24 Score=205.96 Aligned_cols=256 Identities=20% Similarity=0.309 Sum_probs=187.4
Q ss_pred eeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcc--cceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcE
Q 001490 366 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 443 (1068)
Q Consensus 366 ~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 443 (1068)
..|.+|...|++++||.||++||+++.|++|+||++..-+.. +.. ...-.-+..+.++|+||-+. +++++-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~-R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI-RQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh-hccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence 348899999999999999999999999999999999763221 000 01111234688999999886 56666677789
Q ss_pred EEEECCC---CceeeE--------e-ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEE
Q 001490 444 KVWDAVT---GSRTYS--------F-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 511 (1068)
Q Consensus 444 ~iwd~~~---~~~~~~--------~-~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 511 (1068)
++|.+.. |..... | +.|.-.+..+-. .+++.+|++++.|..|.+|++. ++.+..+......-...
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 9997643 222111 1 235566666655 4478899999999999999998 67777777777677788
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCC---CC-----eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEc
Q 001490 512 AYSANGRRLFSCGTSKEGESFLVEWNES---EG-----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 583 (1068)
Q Consensus 512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~---~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 583 (1068)
+.||+|+++++++...+ |.+|.+- .| ..+..+.||. ..|...+|+++..++++.+.||+++|||.
T Consensus 235 avSP~GRFia~~gFTpD----VkVwE~~f~kdG~fqev~rvf~LkGH~---saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPD----VKVWEPIFTKDGTFQEVKRVFSLKGHQ---SAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred eeCCCCcEEEEecCCCC----ceEEEEEeccCcchhhhhhhheeccch---hheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 99999999999987555 8999763 22 2345677887 99999999999999999999999999997
Q ss_pred CC-------CeEEEEE--eCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceee
Q 001490 584 NK-------VQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 634 (1068)
Q Consensus 584 ~~-------~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 634 (1068)
+- .+.+... ..+........++++|+|..||++.. ..+.++..++++...
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYP 366 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccch
Confidence 52 1222222 11222223457999999998887665 578888887765443
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-20 Score=208.02 Aligned_cols=279 Identities=16% Similarity=0.218 Sum_probs=225.1
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCc-ceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 385 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~ 385 (1068)
..|+..-+.++|.|+|. ++.+++.||.|++|+..+-. .... +.-++..|.+++-. +.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--cc
Confidence 36888899999999999 67888899999999987652 2211 22266677777654 55
Q ss_pred EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001490 386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 465 (1068)
Q Consensus 386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 465 (1068)
+|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.|+.|-.|++-++.+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 99999999999999999886433 3445677899999999999 899999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC--------CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490 466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 537 (1068)
Q Consensus 466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 537 (1068)
++.++| ++.+|++.+-||.|++|+++++.....+..- ...+..++|+|+|..+++... ++.|.+|+
T Consensus 143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~ 216 (933)
T KOG1274|consen 143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS 216 (933)
T ss_pred eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence 999977 6679999999999999999988776554332 235678999999666666554 66799999
Q ss_pred CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490 538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 617 (1068)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 617 (1068)
..+.+....+.....+ ..+..+.|+|+|+||++++.||.|.|||.++-.. |.....|.+++|.|+...+-...
T Consensus 217 r~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred cCCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence 9999998888765522 3499999999999999999999999999998222 33345689999999988776665
Q ss_pred CCCeEEEE
Q 001490 618 NENRIKIL 625 (1068)
Q Consensus 618 ~dg~i~iw 625 (1068)
..|...+|
T Consensus 290 ~~g~~~~~ 297 (933)
T KOG1274|consen 290 ALGTLGVS 297 (933)
T ss_pred eccccccC
Confidence 55555554
No 116
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=3.2e-23 Score=216.64 Aligned_cols=216 Identities=16% Similarity=0.201 Sum_probs=161.2
Q ss_pred eecCCCcceEEEEECC-CCCEEEEEeCCcEEEEEEccCCCccc---ceEEEccccccEEEEEEcCCCCcEEEEEEeCCCc
Q 001490 367 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 442 (1068)
Q Consensus 367 ~l~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~---~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 442 (1068)
++.+|++.|+.+.||| +..+||+|+.|..|+||.+..|.... ....+.+..-.|.++.|+|.... ++++ +..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s-~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILAS-GAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEe-ccCce
Confidence 4889999999999999 56789999999999999998543211 12233344457899999998774 4444 45899
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc-eEEecCCCC-cEEEEEEccCCCEE
Q 001490 443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL 520 (1068)
Q Consensus 443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~-~i~~~~~s~d~~~l 520 (1068)
++|||+.+++.+..+.+|...|.+..|+ .||.+|++.+.|..|+|||.+.... ......|++ .-..+.|..+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Ws--eDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWS--EDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccc--cCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 9999999999999999999999999984 5899999999999999999887554 334455544 33456777666677
Q ss_pred EEEeeCCCCceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeE
Q 001490 521 FSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL 588 (1068)
Q Consensus 521 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~ 588 (1068)
++.+.+......|++||.+. +..+.++.-.. ...|.--.|.||.+.++. |-.+.+++.+.+...++
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 77666555567799999875 33444444322 234555668899887766 44778888888876554
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.3e-23 Score=200.92 Aligned_cols=270 Identities=20% Similarity=0.275 Sum_probs=214.6
Q ss_pred CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 389 (1068)
Q Consensus 310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las 389 (1068)
.+.|+.|.|+|.+..| ++++.||++++||+...+.... -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 4689999999999855 5667999999999988755532 23889999999997 557889
Q ss_pred EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001490 390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 469 (1068)
Q Consensus 390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 469 (1068)
|+.||.|+++|++++... .+..|..+|.|+.+++-.. .+++|+.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998754 4668999999999998776 79999999999999988755555554 3347888865
Q ss_pred eecCCccEEEEEEcCCcEEEEeCCCCCceEEecC--CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC----ee
Q 001490 470 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI 543 (1068)
Q Consensus 470 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~----~~ 543 (1068)
.|..|+.|+.+..|.+||+++......... -.-.++++++-|++.-.++++- +|+|.+=.++.. +.
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 556899999999999999998776653322 2337899999998877777765 445555444433 33
Q ss_pred eeEEeccccc------cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490 544 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 617 (1068)
Q Consensus 544 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 617 (1068)
...|+.|... ..+|++++|+|-...+++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 4456666532 246899999999999999999999999999999888887654 23589999999999999987
Q ss_pred C
Q 001490 618 N 618 (1068)
Q Consensus 618 ~ 618 (1068)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 6
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-23 Score=202.26 Aligned_cols=272 Identities=16% Similarity=0.228 Sum_probs=223.1
Q ss_pred EEEEeCCcEEEEEEccCCC---------cccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001490 387 LGVAYSKHIVQLYAYHGGS---------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 457 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~---------~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 457 (1068)
|++|+....|.=+++.-.. .+.+...+..|.++|+++|.+ +. ++++|+.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 5566666666655553221 123344677899999999985 56 8999999999999999999999999
Q ss_pred ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490 458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 537 (1068)
Q Consensus 458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 537 (1068)
-.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.++++|.|++.++.+. |..+++||
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~----D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG----DQVLRTWN 155 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC----Cceeeeeh
Confidence 99999999999987655558999999999999999999889999999999999999999999999885 77899999
Q ss_pred CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490 538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 617 (1068)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 617 (1068)
+-+|+.-....-.. .-..+.|+|.|.+++.++.+ .|-||.+.+......+... ..+.++.|. ++..|++|+
T Consensus 156 LV~Gr~a~v~~L~~----~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKN----KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGG 226 (362)
T ss_pred hhcCccceeeccCC----cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEec
Confidence 99988765555433 34459999999988887765 5899999888777666544 224445444 577899999
Q ss_pred CCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccC
Q 001490 618 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 695 (1068)
Q Consensus 618 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 695 (1068)
+|+.|.+||..+..++..+.+|..+|..+.+-- .|++.+|+++++||.|++||++...
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~--------------------~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYT--------------------NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCceEEEeccCCCccceeeecchhheeeeEEEe--------------------cCCceEEEEeccCceEEEEEccccc
Confidence 999999999999999999999999999887431 4778999999999999999988653
No 119
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=6.6e-23 Score=229.97 Aligned_cols=247 Identities=12% Similarity=0.176 Sum_probs=189.0
Q ss_pred EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCC-CCcEEEEEEeCCCcEEEEECCCCc--------eeeEeccC
Q 001490 390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 460 (1068)
Q Consensus 390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h 460 (1068)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5567889999987653 33478899999999999997 56 89999999999999998642 34567899
Q ss_pred CCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001490 461 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 540 (1068)
Q Consensus 461 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~ 540 (1068)
...|.+++|+|.. ..+|++++.|++|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999998842 2356799999999999999888766664 4568999999999999998875 56799999999
Q ss_pred CeeeeEEeccccccCCe-----EEEEEecCCCEEEEEECCC----eEEEEEcCC-CeEEEEEeCCCCCCCCceEEEecCC
Q 001490 541 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG 610 (1068)
Q Consensus 541 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~ 610 (1068)
++.+..+.+|. +.+ ....|++++.++++++.|+ .|+|||+++ ++++.....+.....+......++|
T Consensus 199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999999887 433 2234568999999988664 799999985 6677666655443322233334468
Q ss_pred CEEEEEECCCeEEEEECCCCceeeecc--ccccceeeeEEcCC
Q 001490 611 TLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPI 651 (1068)
Q Consensus 611 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~ 651 (1068)
.++++|..|+.|++|++..+.. ..+. .+..++.++++.|.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 8999999999999999986632 2222 13345566666653
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.5e-24 Score=203.00 Aligned_cols=325 Identities=11% Similarity=0.142 Sum_probs=239.4
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcc
Q 001490 596 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 675 (1068)
Q Consensus 596 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1068)
++..+|+.++.......+.+++.|.+-+||.+++++++....+|.+.|+++.|+ +.+.
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----------------------~s~~ 203 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----------------------NSGL 203 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec----------------------cccc
Confidence 345568888887777789999999999999999999999999999999988886 5677
Q ss_pred cceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccC
Q 001490 676 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 755 (1068)
Q Consensus 676 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 755 (1068)
++++++.|++-.+|..... +..|.......+ |.... .-.+ |...+ ..++.
T Consensus 204 L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~h-----SsEeE--~e~s-De~~~---------d~d~~------ 253 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVN-------WEVPSNNAPSDH-----SSEEE--EEHS-DEHNR---------DTDSS------ 253 (481)
T ss_pred eEEEccCCcchHHHHHhhc-------CcCCCCCCCCCC-----Cchhh--hhcc-ccccc---------ccccc------
Confidence 7888888888888885421 111110000000 00000 0000 00000 00000
Q ss_pred CcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCE
Q 001490 756 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 834 (1068)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~ 834 (1068)
. ...|..+........+|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|....+.++-.| ..++
T Consensus 254 ~----~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL 328 (481)
T KOG0300|consen 254 E----KSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL 328 (481)
T ss_pred c----ccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence 0 0111112111112225999999999999999999999 89999999999999999999999999999999 8999
Q ss_pred EEEEECCCeEEEEEcCCc-eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCC
Q 001490 835 IAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 913 (1068)
Q Consensus 835 lasg~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 913 (1068)
+++.+.|.+.++||+... ..+..|+||.+.|+++.|.-| ..+++++.|.+|++||+.+... .+.+.... .
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRtd----S 399 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRTD----S 399 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeecC----C
Confidence 999999999999999843 457889999999999999876 5689999999999999987432 22222222 3
Q ss_pred CceEEEEeeCCCEEEEE-eCCeEEEEECCCceeee---eeccCCCcCEEEEEEecCC--CEEEEEECCCcEEEEEcCCC
Q 001490 914 SETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIHEASNL 986 (1068)
Q Consensus 914 ~v~~~~~spdg~~la~~-~d~~i~vwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~t~~~dg~v~vwd~~~~ 986 (1068)
++..++.+..+..||.- .+..|++||+......+ .-..+|..-|++++|+.+- .-|++++-|..+.=|++...
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 58899999999999995 55679999997554332 2246799999999999765 45889999999999998754
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.4e-24 Score=218.17 Aligned_cols=287 Identities=14% Similarity=0.179 Sum_probs=230.1
Q ss_pred cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490 308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 387 (1068)
Q Consensus 308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l 387 (1068)
.|-+-|.++++|...+ .+.||+. |.|+|||+....... . ....-.-....-|+++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--P------------vsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--P------------VSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--c------------cccccccCcccceeeeEecCCCceE
Confidence 4666788899999887 5688887 899999997532110 1 1111122245689999999999999
Q ss_pred EEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001490 388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 467 (1068)
Q Consensus 388 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 467 (1068)
++|+.-.++.|||+..... +....+....-...+++.+||.+ +.+++..||.|.|||+.....++.|+||.+.+.+|
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 9999999999999987543 22223444445678899999999 88999999999999999999999999999999999
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 547 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 547 (1068)
.++. ||..|.+|+-|.+||.||++.+....... ....|.++.++|.+.++++|-. .+.+.+.... +.....+
T Consensus 558 dis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyql 629 (705)
T KOG0639|consen 558 DISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQL 629 (705)
T ss_pred EecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-Cccceee
Confidence 9854 88899999999999999999877665443 2347899999999999999976 4456666543 3333444
Q ss_pred eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490 548 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 627 (1068)
Q Consensus 548 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 627 (1068)
.-|. ..|.++.|.+.|+++++.+.|+.+..|...-|..+...+.. ..|.++.+|.|.+++++|+.|..-.+|.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4455 88999999999999999999999999999999888777643 45899999999999999999988888764
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-24 Score=200.24 Aligned_cols=251 Identities=20% Similarity=0.330 Sum_probs=208.3
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC--CCCcEEEEEEeCCCcEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKV 445 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~i 445 (1068)
-..|++.|..+...--|++||+|+.|++|+|+.+..+.....+.+|.||.++|+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 557999999999888999999999999999999998877677779999999999999976 577 9999999999999
Q ss_pred EECCCCce--eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC---ceEEecCCCCcEEEEEEccC---C
Q 001490 446 WDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN---G 517 (1068)
Q Consensus 446 wd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d---~ 517 (1068)
|.-+.|+- .+....|...|++++|.|.+-|-.|++++.||.|.+.+++... .......|.-.+++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99777743 4566789999999999999999999999999999999988762 23355667778999999985 5
Q ss_pred -----------CEEEEEeeCCCCceeEEEEeCCCCe--eeeEEeccccccCCeEEEEEecCC----CEEEEEECCCeEEE
Q 001490 518 -----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIKI 580 (1068)
Q Consensus 518 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~i 580 (1068)
+.|++++. |+.|.+|+..+++ ..+++.+|. +.|+.++|.|.- .+|+++++||++.|
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 56888876 7779999988763 345578887 999999999974 57899999999999
Q ss_pred EEcCCC--eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490 581 WDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 628 (1068)
Q Consensus 581 wd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 628 (1068)
|..... ....++ .+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 238 wt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 976632 111122 11223458999999999999999999999999755
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-21 Score=214.38 Aligned_cols=514 Identities=15% Similarity=0.147 Sum_probs=325.5
Q ss_pred cccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCc-cEEEEEEcCCcEEEEeCC
Q 001490 415 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD 493 (1068)
Q Consensus 415 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~~l~s~s~dg~i~vwd~~ 493 (1068)
+-...-....||+|++ .++... +..|.||...||.++..+.+|..++.++.+.+.+.. .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 3333344567999999 444333 668999999999999999999999999999887654 678899999999999999
Q ss_pred CCCceEEecCCCCcEEEEEEcc---CCCEEEEEee-C--------CCCceeEEEEeCCCC--eeeeEEeccccccCCeEE
Q 001490 494 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGT-S--------KEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSV 559 (1068)
Q Consensus 494 ~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~~~~-~--------~~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~ 559 (1068)
.......+..... +..+.+.| +-...+..+. + .+...+++-+.+.+. ........+. .-.+
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~----~~~~ 165 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ----EPKS 165 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc----CCcc
Confidence 8887776655443 22222212 1111111111 0 000111111111110 0011111111 1456
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE--eCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeecc
Q 001490 560 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 637 (1068)
Q Consensus 560 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (1068)
+.+++.+++....- +..+.+|+..++...... ....+.-.+.++++||+++++|++..||+|.+|.--.. .
T Consensus 166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~ 238 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------S 238 (792)
T ss_pred EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------c
Confidence 77888777665554 456888988875521111 11122333789999999999999999999999975421 0
Q ss_pred ccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEE
Q 001490 638 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 717 (1068)
Q Consensus 638 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 717 (1068)
... -+.++|.- |...|.+++
T Consensus 239 ~~~-------------------------------------------~t~t~lHW-----------------H~~~V~~L~ 258 (792)
T KOG1963|consen 239 DDS-------------------------------------------ETCTLLHW-----------------HHDEVNSLS 258 (792)
T ss_pred ccc-------------------------------------------ccceEEEe-----------------cccccceeE
Confidence 000 11111111 567899999
Q ss_pred EecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001490 718 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 797 (1068)
Q Consensus 718 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 797 (1068)
|+++|.+|++|+.+|.+.+|.+..++. .. ++ .-..+|..+.+|||+.+.+...
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEe
Confidence 999999999999999999998765421 11 11 1577899999999999887765
Q ss_pred -CCeEEEEEccCceeEEEecCC-----------CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec------
Q 001490 798 -GGVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------ 859 (1068)
Q Consensus 798 -dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~------ 859 (1068)
|+.|.+....+.....++.+. .+-.+.++++| --+.++..+..|.|.+||+.+.+.+..+.
T Consensus 312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~ 390 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY 390 (792)
T ss_pred cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence 899999888766555444332 23457889999 66778888899999999998876655442
Q ss_pred -----ccccCeEEEEEcCCCCEEEEEeC--------CC--cEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC
Q 001490 860 -----GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 924 (1068)
Q Consensus 860 -----~h~~~V~~l~~spdg~~l~s~s~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 924 (1068)
.+.-.+++++.+-.|.+++|.-. || .+++|-...........-.....|.. ..+..+.+++..
T Consensus 391 ~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~r 468 (792)
T KOG1963|consen 391 SDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTR 468 (792)
T ss_pred cCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcc
Confidence 12345788888889999998642 33 47889877654332222122222222 123333444433
Q ss_pred C-EEEE-EeCCeEEEEECCCceee---------eeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCC-CcEEEEe
Q 001490 925 T-RFLL-VHETHLAIYEAEELTCL---------KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRI 992 (1068)
Q Consensus 925 ~-~la~-~~d~~i~vwd~~~~~~~---------~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~-~~~~~~~ 992 (1068)
. ..++ +.|+.++||-..+.+-+ ...-.-|..++++++||.||..|+ ++.|++|.+||..+ .++.+..
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~ 547 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTE 547 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccc
Confidence 3 5665 68999999998432211 111123689999999999997666 55788999999999 5554443
Q ss_pred ccccccCCCCccCcccceEE-EECCCCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 001490 993 LSTAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1044 (1068)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 1044 (1068)
... +.++...+. +-.+ ....+.....+.+.+|++....-.|.
T Consensus 548 ~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w~ 590 (792)
T KOG1963|consen 548 GSR--------NWPIAELLFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIWN 590 (792)
T ss_pred ccc--------ccchHhHhhhcccc--cccceeeccCceEehHhhhhhheecc
Confidence 311 111111111 1122 24455666778999999988777773
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-20 Score=205.33 Aligned_cols=271 Identities=12% Similarity=0.179 Sum_probs=229.6
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCC-CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEEC
Q 001490 370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 448 (1068)
Q Consensus 370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 448 (1068)
.|...-+.++|.|+|.+|.+++.||.|++|+.... +... .+..+...|.+++... . .+++|+.+++|.+|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~s--~--~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACYS--N--HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeecc--c--ceEEeeccceEEEeeC
Confidence 68889999999999999999999999999998776 3222 3333777888887643 4 6999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490 449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 528 (1068)
Q Consensus 449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 528 (1068)
..+..-..+....-+++.++++. +|.+++.||.|-.|++-+.........+.+|..+|.++.|+|++.+||+...
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--- 158 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--- 158 (933)
T ss_pred CCCCccceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec---
Confidence 98887666666778899999955 7889999999999999999999999999999999999999999999999876
Q ss_pred CceeEEEEeCCCCeeeeEEeccccc-----cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490 529 GESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 603 (1068)
Q Consensus 529 ~~~~i~~wd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 603 (1068)
+|.|++||+.++.+..++.+.... ...+..++|+|++..++..+.|+.|.+|+..+......+........+..
T Consensus 159 -dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 -DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred -CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 778999999999887777654321 23467789999999999999999999999999999998877665555889
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccccc
Q 001490 604 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 657 (1068)
Q Consensus 604 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 657 (1068)
+.|+|+|++||+++.+|.|.|||.++.. .......|.+++|.|+...+..
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEE
Confidence 9999999999999999999999999722 1445677889999888766543
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=9.2e-24 Score=214.62 Aligned_cols=264 Identities=17% Similarity=0.241 Sum_probs=211.4
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-CC
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GS 385 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g~ 385 (1068)
-.|.++|+.+.+-|....++|+++..+.|.|||..+-.-..... + ...+...+.||...=..++|++. .-
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~---~~~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------G---ECRPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------c---cCCCceEEEeecccccccccccccce
Confidence 46888999999999999999999999999999987543322100 0 11123348899988888999995 45
Q ss_pred EEEEEeCCcEEEEEEccCCCc----ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC--CCceeeEecc
Q 001490 386 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG 459 (1068)
Q Consensus 386 ~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~ 459 (1068)
+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.+......+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 788999999999999976543 5556678999999999999998876 79999999999999999 5566678889
Q ss_pred CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc-eEEecCCCCcEEEEEEccCCCEE-EEEeeCCCCceeEEEEe
Q 001490 460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWN 537 (1068)
Q Consensus 460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l-~~~~~~~~~~~~i~~wd 537 (1068)
|.+.|.+++|+|. ++..||+||.|++|.+||+++... ...+..|...|..+.|||....+ ++++. ++.+.+||
T Consensus 271 h~~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vWD 345 (422)
T KOG0264|consen 271 HSAEVNCVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVWD 345 (422)
T ss_pred cCCceeEEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEEe
Confidence 9999999999987 467999999999999999998765 56889999999999999976654 44443 77899999
Q ss_pred CCCCeee-----------eEEeccccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCC
Q 001490 538 ESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 585 (1068)
Q Consensus 538 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 585 (1068)
+..-... ..+-.|..|...|..+.|+|+..++++ +++|+.+.||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 8752221 112223334489999999999988765 78999999999863
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.1e-23 Score=220.42 Aligned_cols=275 Identities=15% Similarity=0.214 Sum_probs=222.7
Q ss_pred ccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeE-EE
Q 001490 707 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA 785 (1068)
Q Consensus 707 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~ 785 (1068)
.+|...+..+++.+.. .+++++.||++++|+-..... +....+ .++.+-|.+ ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~~~--~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETHAF--EGPKGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccceec--ccCcceeeccce
Confidence 5688889888876655 689999999999997322211 110111 125555555 66
Q ss_pred Eec-CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccccc
Q 001490 786 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 863 (1068)
Q Consensus 786 ~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~ 863 (1068)
+-+ ++-.+++|+ |.++.+|...+..++.++.+|...|.+++... ++. +++|+.|.++++|.. +++...+++|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 664 444466666 89999999999999999999999999999877 665 999999999999965 567777999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCc
Q 001490 864 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 943 (1068)
Q Consensus 864 ~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~ 943 (1068)
.|+++++-|++ .++|||.|++|++|.-.+ .++++.+|.. .|+.+++-+++.+|-++.||.|++|++ +|
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence 99999999987 889999999999998754 7888999987 899999999999999999999999999 78
Q ss_pred eeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEE
Q 001490 944 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1023 (1068)
Q Consensus 944 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1023 (1068)
+++.+ ..+|+..|.++....+++.++++++|+++++|+.. ++...+. +|.. .++ ++.+-+ +.-++
T Consensus 210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPtt----siW--sa~~L~--NgDIv 274 (745)
T KOG0301|consen 210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPTT----SIW--SAKVLL--NGDIV 274 (745)
T ss_pred ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCcc----ceE--EEEEee--CCCEE
Confidence 88877 66899999999999999999999999999999988 5554444 2332 344 455554 45699
Q ss_pred EEeCCCcEEEEeCC
Q 001490 1024 VGLTNGEVYVIEPN 1037 (1068)
Q Consensus 1024 ~~~~dg~i~~w~~~ 1037 (1068)
+|+.||.|++|-..
T Consensus 275 vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVD 288 (745)
T ss_pred EeccCceEEEEEec
Confidence 99999999999876
No 127
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1e-21 Score=206.60 Aligned_cols=273 Identities=13% Similarity=0.148 Sum_probs=205.6
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 391 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~ 391 (1068)
.|..++|-|||..|++.++ ..+.|||++.|..+.. +++|.+.|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 7999999999997766554 6899999999998876 889999999999999999999999
Q ss_pred CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeee
Q 001490 392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 471 (1068)
Q Consensus 392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 471 (1068)
.|+.|.+|+-.-...++ -.|.+.|.|+.|+|-.. .|++++- ...-+|..+..... .|...+..++-++
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~----K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVS----KHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHH----hhhhheeEEEeee
Confidence 99999999976543332 26999999999999998 6888874 34778976544332 2444444455555
Q ss_pred cCCccEEEEEEcCCcEEEEeCCCCCceEEec---CCCCcEEEEEEccCCC-----EEEEEeeCCCCceeEEEEeCCCCee
Q 001490 472 KENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 543 (1068)
Q Consensus 472 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 543 (1068)
.+||++++.|-.+|+|.+-+-. ++....+. +...+|.+++|+|... .+++..- ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 7799999999999999988543 33333333 3556899999999542 2333221 223444443 3444
Q ss_pred eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001490 544 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 623 (1068)
Q Consensus 544 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 623 (1068)
+.+-+... ....|+.+.++|++++.|+.|+.+.+|-. .|-.+.++... ...|+.++..|+++.++.|+.||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence 43333222 45678999999999999999999999975 56666666543 24689999999999999999999999
Q ss_pred EEECCC
Q 001490 624 ILETPE 629 (1068)
Q Consensus 624 iwd~~~ 629 (1068)
.|++..
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 998763
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.9e-21 Score=212.45 Aligned_cols=289 Identities=11% Similarity=0.056 Sum_probs=212.5
Q ss_pred EEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE-EEEeCCcEEEEEEccC
Q 001490 325 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 403 (1068)
Q Consensus 325 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l-as~~~d~~i~vwd~~~ 403 (1068)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 778999999999999999887654 3333 346789999999987 5667789999999998
Q ss_pred CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc
Q 001490 404 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 483 (1068)
Q Consensus 404 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~ 483 (1068)
++... .+..+. .+..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.++++++ ++.++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 86543 333333 3567899999984 345556789999999999888777753 33457777765 7778888887
Q ss_pred CC-cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----ccCCeE
Q 001490 484 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 558 (1068)
Q Consensus 484 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~ 558 (1068)
++ .+.+||..+......... ...+..++|+++++++++++. .++.|++||+.+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 467789877655443322 234577999999998876542 256799999999988776653210 011235
Q ss_pred EEEEecCCCEEEE-EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEECCCCceeeec
Q 001490 559 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA 636 (1068)
Q Consensus 559 ~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 636 (1068)
.++|+|+++++++ .+.++.+.+||..+++.+..+... ..+.+++|+|+|++|+++. .++.|.+||+.+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6889999998665 456778999999998887665432 2478999999999998864 5899999999999888887
Q ss_pred cccccceeeeEEc
Q 001490 637 GVLSDNLRKLSVN 649 (1068)
Q Consensus 637 ~~~~~~i~~~~~~ 649 (1068)
+.. ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 654 333555554
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=194.81 Aligned_cols=299 Identities=15% Similarity=0.200 Sum_probs=224.4
Q ss_pred CCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490 297 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 376 (1068)
Q Consensus 297 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 376 (1068)
.+|..+..+|.... -.|+.||+.|. +||+|..||.|.|||+.|...-+. +.+|..+|.
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 56777788887543 78999999997 789999999999999998765443 889999999
Q ss_pred EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490 377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 456 (1068)
Q Consensus 377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 456 (1068)
+++||+||+.|++++.|..|.+||+..|..++.. ....+|+.+.|+|-.+...+++-- +..-.+-++..+... .
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~-~ 143 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHS-V 143 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCcee-e
Confidence 9999999999999999999999999999876633 356789999999987764454443 444555555442211 1
Q ss_pred ecc-CCCcEEEE--eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC-CcEEEEEEccCCCEEEEEeeCCCCcee
Q 001490 457 FEG-HGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESF 532 (1068)
Q Consensus 457 ~~~-h~~~v~~i--~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~ 532 (1068)
+.. ..+..... +-..+..|+++++|...|.+.++|..+.+++..++... ..|..+.++..|++++..+. |..
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 111 11111111 11235578899999999999999999999988887766 78999999999999999876 778
Q ss_pred EEEEeCCCC-------ee--eeEEeccccccCCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEeCCCCCCCCc
Q 001490 533 LVEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENP 602 (1068)
Q Consensus 533 i~~wd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 602 (1068)
|+.|++..- +. .++++..- ..-.-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~ 297 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELL 297 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hhee
Confidence 999987621 11 12222111 112346788999999998876 456799999999999999987654 3467
Q ss_pred eEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 603 RICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 603 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
.+.|+|-...+++. ..|.+++|.....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeecc
Confidence 88999988888877 6699999987643
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=4.8e-21 Score=209.18 Aligned_cols=279 Identities=18% Similarity=0.237 Sum_probs=202.3
Q ss_pred CEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEE-EEEECCCeEEEEECCCCceeeeccccccceee
Q 001490 567 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 645 (1068)
Q Consensus 567 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 645 (1068)
..+++++.|+.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 467888999999999999999888887543 25789999999876 456678899999977543221110
Q ss_pred eEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceE
Q 001490 646 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 725 (1068)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 725 (1068)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEE
Q 001490 726 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 803 (1068)
Q Consensus 726 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~i 803 (1068)
....+..++++|+++.++++. ++.+++
T Consensus 71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 000123456777777665543 578889
Q ss_pred EEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC-eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEE-e
Q 001490 804 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 881 (1068)
Q Consensus 804 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s 881 (1068)
||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.. ...+..++|+|||++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 99888777776653 33467899999 899999888775 567889988877655442 3346789999999988654 4
Q ss_pred CCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE--EeCCeEEEEECCCceeeeeeccCCCcCEEE
Q 001490 882 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 959 (1068)
Q Consensus 882 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 959 (1068)
.++.|++||+.+++............+.. ......++|+|+|+++++ +.++.+.+||..+++.+.... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 69999999999876433221111110100 112456899999998655 456789999999888776543 3457889
Q ss_pred EEEecCCCEEEEE-ECCCcEEEEEcCCCcEEEEec
Q 001490 960 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 960 l~fs~dg~~l~t~-~~dg~v~vwd~~~~~~~~~~~ 993 (1068)
++|+|+|++|+++ +.+|.|.+||+.+++.+..+.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999876 468999999999999998887
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=205.27 Aligned_cols=288 Identities=14% Similarity=0.217 Sum_probs=233.8
Q ss_pred CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC-EEE
Q 001490 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG 388 (1068)
Q Consensus 310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~-~la 388 (1068)
.+.|++|.|+|.-+ +|.+++.|++++||.+.........++ .+ -..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~---------------~l--~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSI---------------HL--EKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheee---------------ee--ccCccceeeecCCCceEEE
Confidence 35899999999987 889999999999999975332221111 12 346899999999999 888
Q ss_pred EEeCCcEEEEEEccCCCcccceEEEcccc-ccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001490 389 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 467 (1068)
Q Consensus 389 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 467 (1068)
+++.....+.||+.+.+..+. ..+.++. ..+.....|++++ +|+..|..|.|.+....+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~-~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKL-KPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccccc-cCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 999999999999999875432 2344544 3577888999999 89999999999999999999999887 67889999
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC-cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC------
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------ 540 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~------ 540 (1068)
+|+ .+++.|++++.+|.|.+||++...++..+...+. .-+++|.++++.++|+|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 997 4789999999999999999999988887766554 4578899999999999986 66899999653
Q ss_pred CeeeeEEeccccccCCeEEEEEecCCCEEEEEE--CCCeEEEEEcCCCeEEEEEeCC-CCCCCCceEEEecCCCEEEEEE
Q 001490 541 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA 617 (1068)
Q Consensus 541 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~ 617 (1068)
.+++..+.... ..|.++.|+++.+.|+.+| .+..+++-++.+......++.. .....|+|++|||.+.+||+|.
T Consensus 425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 34555555555 7899999999999888876 5778999999887777666543 2345689999999999999999
Q ss_pred CCCeEEEEECC
Q 001490 618 NENRIKILETP 628 (1068)
Q Consensus 618 ~dg~i~iwd~~ 628 (1068)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999874
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=205.57 Aligned_cols=292 Identities=15% Similarity=0.191 Sum_probs=229.7
Q ss_pred EEEEEcCc-CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCC-CcceEEEEECCCCCEEEEEeC-CcEEEEEEc
Q 001490 325 LLLVGTNV-GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAY 401 (1068)
Q Consensus 325 lla~gs~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~spdg~~las~~~-d~~i~vwd~ 401 (1068)
++.+++.| .++.+||+.+|....+ +++. ...-.++..- .+.|++++.. ...+.+|.+
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~-------------------ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i 68 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQ-------------------YKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEI 68 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEE-------------------ecCcccccchhhhhh-chhheeeecccCcccccccc
Confidence 44445555 4599999999987654 2222 1111111111 2367777743 457999999
Q ss_pred cCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEE
Q 001490 402 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 481 (1068)
Q Consensus 402 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 481 (1068)
.......+. .--.++|.+++-+|+|. +|+.|+..+.|++|.+.+|..+..+.+|-..|+++.|+. ||.+|++|
T Consensus 69 ~k~~~~~q~---~v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~--dgs~iiTg 141 (476)
T KOG0646|consen 69 LKKDQVVQY---IVLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD--DGSHIITG 141 (476)
T ss_pred Cchhhhhhh---cccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC--CCcEEEec
Confidence 765544322 23457899999999998 788888999999999999999999999999999999954 88999999
Q ss_pred EcCCcEEEEeCC---------CCCceEEecCCCCcEEEEEEccC--CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001490 482 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 550 (1068)
Q Consensus 482 s~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 550 (1068)
+.||.|.+|++. +......+..|.-+|+.+...+. ..++++++. |.++++||+..|..+.++...
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence 999999999763 23456678888889999988765 357888875 778999999999999888765
Q ss_pred ccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----------------eEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490 551 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLA 614 (1068)
Q Consensus 551 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 614 (1068)
. .+.+++.+|.+..+++|+++|.|.+.++... ..+..+.+|.....|+|++++-||.+|+
T Consensus 218 ~----si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 S----SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred C----cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 4 8999999999999999999999999887542 2344555555545899999999999999
Q ss_pred EEECCCeEEEEECCCCceeeeccccccceeeeEEcCC
Q 001490 615 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 651 (1068)
Q Consensus 615 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 651 (1068)
+|+.||.+.|||..+.++++++....++|+.+.+.|.
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 9999999999999999999988878888988888654
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.3e-23 Score=189.49 Aligned_cols=255 Identities=16% Similarity=0.209 Sum_probs=203.5
Q ss_pred cccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC--C
Q 001490 306 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D 383 (1068)
Q Consensus 306 l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--d 383 (1068)
-..|.+.|-.+...--|+ .|||++.|++|+|+.+.++..... ...|.||+++|..++|.. -
T Consensus 7 dt~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPKF 69 (299)
T ss_pred hhhhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccccc
Confidence 357899999888888898 469999999999999987654211 112889999999999987 7
Q ss_pred CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-c--eeeEeccC
Q 001490 384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGH 460 (1068)
Q Consensus 384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~h 460 (1068)
|.+||+++.||.|.||.-++|. ..+......|...|++++|.|.+--+.|++++.||.|.|.+..+. . .......|
T Consensus 70 G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred CcEeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 9999999999999999999884 444446778999999999999988889999999999999987654 1 22445689
Q ss_pred CCcEEEEeeeecCC-c-----------cEEEEEEcCCcEEEEeCCCCCc--eEEecCCCCcEEEEEEccCC----CEEEE
Q 001490 461 GAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFS 522 (1068)
Q Consensus 461 ~~~v~~i~~~~~~~-~-----------~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~l~~ 522 (1068)
.-.|+++++.|..- | +.|++|+.|..|++|+.+...- ...+..|...|+.++|.|.- .+|++
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 99999999987521 2 5799999999999999988643 23478888999999999964 47888
Q ss_pred EeeCCCCceeEEEEeCCCC--eee-eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 001490 523 CGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 585 (1068)
Q Consensus 523 ~~~~~~~~~~i~~wd~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 585 (1068)
|+. |+.+.||-.... ... ..+.... ..+..+.|+..|+.|+.++.|+.+.+|.-..
T Consensus 229 ~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 229 CSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 876 667999976521 111 1122233 6799999999999999999999999997553
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=9.1e-22 Score=189.96 Aligned_cols=270 Identities=14% Similarity=0.103 Sum_probs=211.1
Q ss_pred CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC
Q 001490 371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 450 (1068)
Q Consensus 371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 450 (1068)
.+..|..+.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.+ +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 56899999999999999999999999999999874332 225899999999998765 89999999999999998
Q ss_pred CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490 451 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 451 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
+.... +..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|..|++++. +
T Consensus 85 ~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Cccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 87654 45699999999987643 489999999999999998754444444333 6766664 4667777665 5
Q ss_pred eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEeCCCC-------CC
Q 001490 531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 599 (1068)
Q Consensus 531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 599 (1068)
..+.+||+++.......... .-+..++++++-|++.-.++++-||.|.+=.++.. +....++.|.. ..
T Consensus 155 r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 57999999876543322111 11367899999999888999999999988666554 33334444321 23
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccc
Q 001490 600 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 658 (1068)
Q Consensus 600 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 658 (1068)
+|++++|+|-...|++|+.||.|.+||..+.+.+..+......|..++|+.++..++++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 68999999999999999999999999999999999888888889999998655554433
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.6e-22 Score=203.16 Aligned_cols=302 Identities=16% Similarity=0.200 Sum_probs=225.1
Q ss_pred EeCCC-cEEEEECCCCceeeEeccC-CCcEEEEeeeecCCccEEEEEE-cCCcEEEEeCCCCCceEEecCCCCcEEEEEE
Q 001490 437 CGDDK-TIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 513 (1068)
Q Consensus 437 ~~~d~-~i~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 513 (1068)
++.|. ++.+||+.+|....++++. ...-.++... ++.+++++. ....|.+|.+.............+++.+++-
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS 89 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence 33444 5999999999999888765 2222222211 224666654 4457999998776666655666778999999
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC--------
Q 001490 514 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-------- 585 (1068)
Q Consensus 514 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-------- 585 (1068)
+|+|.+|+.++. .+.|++|.+.+|.++..+..|. ..|+++.|+.|+.++++||.||.|.+|.+.+
T Consensus 90 ~n~G~~l~ag~i----~g~lYlWelssG~LL~v~~aHY---Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 90 SNLGYFLLAGTI----SGNLYLWELSSGILLNVLSAHY---QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred CCCceEEEeecc----cCcEEEEEeccccHHHHHHhhc---cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC
Confidence 999999999865 4459999999999999998888 9999999999999999999999999998642
Q ss_pred -CeEEEEEeCCCCCCCCceEEEecC--CCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccC
Q 001490 586 -VQLLTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 662 (1068)
Q Consensus 586 -~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 662 (1068)
-+++..+..| .-+|..+...+. ..++++++.|.++++||+..+..+.++.
T Consensus 163 ~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------------------------- 215 (476)
T KOG0646|consen 163 SVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------------------------- 215 (476)
T ss_pred CccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-------------------------
Confidence 2344444433 455777766654 4578888889999999888765443322
Q ss_pred eeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCC
Q 001490 663 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 742 (1068)
Q Consensus 663 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 742 (1068)
....+.+++..|....+.+|+.+|.|.+.++..-
T Consensus 216 ----------------------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 216 ----------------------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred ----------------------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 2246788999999999999999998887654321
Q ss_pred ccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCC--
Q 001490 743 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP-- 820 (1068)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~-- 820 (1068)
. +....+. .+.++ ..+..+..+.+|.+
T Consensus 250 ~--------------------------------~~~~~v~------------------~k~~~-~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 250 S--------------------------------GQSAGVN------------------QKGRH-EENTQINVLVGHENES 278 (476)
T ss_pred C--------------------------------ccccccc------------------ccccc-cccceeeeeccccCCc
Confidence 1 0111111 11111 12445566777877
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCC
Q 001490 821 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 873 (1068)
Q Consensus 821 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spd 873 (1068)
.|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|-
T Consensus 279 ~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 279 AITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999999 9999999999999999999999999998877889999999664
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.9e-22 Score=205.64 Aligned_cols=284 Identities=12% Similarity=0.147 Sum_probs=233.4
Q ss_pred cCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC---eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeE
Q 001490 502 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 578 (1068)
Q Consensus 502 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 578 (1068)
..|+.-|..+++|...+++++|+ .+.|++||+... ..+..+.... ....|+++...|||+.|++|++-.++
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEecccccee
Confidence 34666788899999999999986 678999998743 2333443332 24679999999999999999999999
Q ss_pred EEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccc
Q 001490 579 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 658 (1068)
Q Consensus 579 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 658 (1068)
.|||+....+....+.......+..++.+||.++.+++..||.|.|||+.+...+..+++|.+...|+.++
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis--------- 560 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS--------- 560 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec---------
Confidence 99999877665555444444568899999999999999999999999999999999999999999999986
Q ss_pred cccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEe
Q 001490 659 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 738 (1068)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 738 (1068)
+||..|.+|+-|+++|.||+......+... ....|.++..+|++.++++|-.++.+.+..
T Consensus 561 -------------~dGtklWTGGlDntvRcWDlregrqlqqhd-------F~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 561 -------------KDGTKLWTGGLDNTVRCWDLREGRQLQQHD-------FSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred -------------CCCceeecCCCccceeehhhhhhhhhhhhh-------hhhhheecccCCCccceeeecccCcEEEEe
Confidence 788899999999999999987655444333 346799999999999999999999888765
Q ss_pred ccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecC
Q 001490 739 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP 817 (1068)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~ 817 (1068)
..... ..... -|+..|.++.|++-|+++++.+ |+-+-.|.+.-|..+...+
T Consensus 621 ~skp~-----------------------kyqlh----lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk- 672 (705)
T KOG0639|consen 621 TSKPE-----------------------KYQLH----LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK- 672 (705)
T ss_pred cCCcc-----------------------ceeec----ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-
Confidence 43221 11111 2889999999999999999887 8889999998888776665
Q ss_pred CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEc
Q 001490 818 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 849 (1068)
Q Consensus 818 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 849 (1068)
....|.++.+|. |+++|++|+.|+...||.+
T Consensus 673 E~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 ESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 567899999999 8999999999998888865
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.6e-21 Score=185.92 Aligned_cols=320 Identities=13% Similarity=0.187 Sum_probs=230.9
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-CCC
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 385 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-dg~ 385 (1068)
..|.+.|+.+...|...+++.+|+.||.|.+||++....-....+ +-+ ..|. .....-.+|.-.|..+.|-| |..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence 357789999999997777899999999999999976442111000 000 0010 11122457889999999999 677
Q ss_pred EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCC-cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490 386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464 (1068)
Q Consensus 386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 464 (1068)
.+.+++.|.+++|||+++-+... .+ ...+.|.+-++||-.. .-++++|..|-.|++-|+.+|..-+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 88899999999999999865433 23 3456788888888643 3378888889999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001490 465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 544 (1068)
Q Consensus 465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 544 (1068)
.++.|+|.. ...|++|+.||.|++||++... +..++.|..+++..
T Consensus 192 laV~Wsp~~-e~vLatgsaDg~irlWDiRras----------------------------------gcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 192 LAVEWSPSS-EWVLATGSADGAIRLWDIRRAS----------------------------------GCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEeccCc-eeEEEecCCCceEEEEEeeccc----------------------------------ceeEEeecccCccC
Confidence 999999874 4688999999999999987531 11333444333322
Q ss_pred eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC----CCCCCCceEEEecCCCEEEEEECCC
Q 001490 545 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANEN 620 (1068)
Q Consensus 545 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg 620 (1068)
..++....+.+.+..++|+.++.++++.+.|..+++|+...|+....-.++ .....-..+. +.+...++.--.++
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~ 315 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG 315 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence 233322334488999999999999999999999999999987643222111 0000001122 33444555555678
Q ss_pred eEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeeccc
Q 001490 621 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 692 (1068)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 692 (1068)
.+.++++-++..+..+..|-..+.+.++. ++-....++..|+.+..|-..
T Consensus 316 ~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 316 SLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 99999999999999999998888888875 556667788888888888753
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.2e-22 Score=200.69 Aligned_cols=281 Identities=14% Similarity=0.187 Sum_probs=222.5
Q ss_pred CCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCc-eEEEeecCccEEEEeccCCccCCCccc
Q 001490 672 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEA 750 (1068)
Q Consensus 672 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~ 750 (1068)
|....+++++.|+++++|.++.......+.+.+. ..+|.+..|.|+|. .+++++....++.||+...+....
T Consensus 223 p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~----~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~--- 295 (514)
T KOG2055|consen 223 PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE----KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL--- 295 (514)
T ss_pred CCCceEEEecCCCcEEEEEecCccChhheeeeec----cCccceeeecCCCceEEEecccceEEEEeeccccccccc---
Confidence 5667789999999999999987766666555443 47899999999999 788888888999999865432111
Q ss_pred eeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeC
Q 001490 751 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 829 (1068)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 829 (1068)
.+..|. ....+....+|+++++|+..+ .|.|.+....|++.+..++ -.+.|..++|+.
T Consensus 296 ---------~~~~g~-----------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS 354 (514)
T KOG2055|consen 296 ---------KPPYGV-----------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS 354 (514)
T ss_pred ---------cCCCCc-----------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec
Confidence 111111 244677889999999999998 6999999999999998887 667899999999
Q ss_pred CCCCEEEEEECCCeEEEEEcCCceeeeeeccccc-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeeeeecCCC
Q 001490 830 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDG 907 (1068)
Q Consensus 830 ~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~ 907 (1068)
+++.|++.+.+|.|++||+....++.++....+ .-++++.|++|.+||+|+..|.|.|||.++.-. ...+++.....
T Consensus 355 -dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN 433 (514)
T KOG2055|consen 355 -DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN 433 (514)
T ss_pred -CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh
Confidence 889998889999999999999999888874322 235688889999999999999999999765221 11223333333
Q ss_pred cccCCCCceEEEEeeCCCEEEEE---eCCeEEEEECCCceeeeeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490 908 VMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHE 982 (1068)
Q Consensus 908 ~~~~~~~v~~~~~spdg~~la~~---~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vwd 982 (1068)
-. ..|+++.|++|++.||.+ .++.+++--+.+......|.... -+.|++++|||.|.+|+.|..+|.|.+|.
T Consensus 434 Lt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 434 LT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 33 379999999999999983 56789999998888777765442 57899999999999999999999999998
Q ss_pred cC
Q 001490 983 AS 984 (1068)
Q Consensus 983 ~~ 984 (1068)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 64
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=197.66 Aligned_cols=304 Identities=17% Similarity=0.189 Sum_probs=228.6
Q ss_pred eeeecccCCCCceEEEEcCCCC-eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 302 VAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~v~~spdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
.....+-|.+.|++++|+|... .++|+|+..|+|-+||+.+.+...... .++..|..+|.++.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKF 242 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEe
Confidence 3344566788999999999887 799999999999999997544443322 237789999999999
Q ss_pred CCC-CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCce-eeEec
Q 001490 381 SPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFE 458 (1068)
Q Consensus 381 spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~ 458 (1068)
+|. -..+++.+.||+|++-|++++.. .....+......+..+.|+.+.. .++.++.=|.+.+||.+++.. ...+.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhh
Confidence 994 56788899999999999998642 22223333445678889998888 677888788999999998665 56667
Q ss_pred cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce----EEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490 459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 534 (1068)
Q Consensus 459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 534 (1068)
-|...|.+++++|. ...+|++++.|++.+|||++..... .....|...|.+..|||++-.|++.+. |..|+
T Consensus 320 lh~kKI~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IR 394 (498)
T KOG4328|consen 320 LHKKKITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIR 394 (498)
T ss_pred hhhcccceeecCCC-CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceE
Confidence 79999999999987 4479999999999999999875543 345567789999999998888888775 66799
Q ss_pred EEeCC----CCeeeeEEecccccc--CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490 535 EWNES----EGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 608 (1068)
Q Consensus 535 ~wd~~----~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 608 (1068)
+||.. .-....++.....+. -......|.|+.+++++|-.-..|-|+|-..++.+..+-.+.......-..|+|
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 99983 333333333222111 123456799999999999999999999999999887765443322223457999
Q ss_pred CCC-EEEEEECCCeEEEEECC
Q 001490 609 NGT-LLAVIANENRIKILETP 628 (1068)
Q Consensus 609 ~~~-~l~~~~~dg~i~iwd~~ 628 (1068)
-+. +++-++..|.|+||..+
T Consensus 475 ~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeccCCccceEEEEecC
Confidence 777 44555567889988654
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1e-21 Score=205.03 Aligned_cols=342 Identities=12% Similarity=0.159 Sum_probs=254.8
Q ss_pred CccCCCCccccccccc-------cCCCccCCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcce
Q 001490 274 PDYSPKSSLKKEMFQS-------FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL 346 (1068)
Q Consensus 274 ~~fsP~~s~~~~~~~~-------~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~ 346 (1068)
+..+|+-...+..... -.+..+..+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||+++
T Consensus 357 LYL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcv 435 (733)
T KOG0650|consen 357 LYLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCV 435 (733)
T ss_pred hhhCcccccceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEE
Confidence 3456665444433221 2334567788899999999999999999999998 7899999999999999999999
Q ss_pred eeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC--EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEE
Q 001490 347 FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA 424 (1068)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~ 424 (1068)
++..+ .+.|.||+|+|.++ .||++..+. +.|-+..-|..+.. +.+.
T Consensus 436 r~~~~--------------------d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~t~------ 483 (733)
T KOG0650|consen 436 RTVQF--------------------DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GPTK------ 483 (733)
T ss_pred EEEee--------------------cceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cchh------
Confidence 76432 35899999999765 455554444 66666554432211 0000
Q ss_pred EcCCCCcEEEEEE----eCCCcEEEEECCCCc----eeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCC
Q 001490 425 FSAPCKQISVITC----GDDKTIKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYD 493 (1068)
Q Consensus 425 ~s~d~~~~~l~s~----~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~ 493 (1068)
. .|+++ ..++.+..|.-.... -++..-.|...|..+.|+. .|.+|++...+ ..|.|.++.
T Consensus 484 -----e--ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 484 -----E--LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred -----h--hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecc
Confidence 0 11111 235577788644211 1334446999999999987 66799988654 468899988
Q ss_pred CCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE
Q 001490 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 573 (1068)
Q Consensus 494 ~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 573 (1068)
....+..+....+.+.++.|+|...+|++++ ...|++||+..++.++++.... ..|..++.+|.|..|+.|+
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGS 626 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEec
Confidence 8777777777788999999999999999887 4569999999988888877655 7899999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC------CC---ceeeeccccccc-
Q 001490 574 DDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN- 642 (1068)
Q Consensus 574 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~~~~~~~~~- 642 (1068)
.|+.+..+|+.-. ++.+++..|. ..+.+|+|++.-.++++|+.||++.|+.-. .+ -++..+++|...
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~--~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHE--KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhh--hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 9999999999854 5666777664 458999999999999999999999998532 11 234566676654
Q ss_pred ---eeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceee
Q 001490 643 ---LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE 689 (1068)
Q Consensus 643 ---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w 689 (1068)
|....|+ |...+|++++.|++|++|
T Consensus 705 ~~gVLd~~wH----------------------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIWH----------------------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeeccc----------------------CCCceEEecCCCceEEee
Confidence 5555554 667889999999999998
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3.2e-21 Score=183.86 Aligned_cols=305 Identities=14% Similarity=0.160 Sum_probs=219.7
Q ss_pred ccccEEEEEEec-CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001490 709 KANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 787 (1068)
Q Consensus 709 ~~~~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 787 (1068)
|.+.|+++.+.+ .|+++++|+.||.+.+||+............. ...|+... ..+.+|...|..+.|-
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~-~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAK-QHENGHKYAISSAIWY 110 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeeccc-cCCccceeeeeeeEEe
Confidence 788999999876 58999999999999999997654321111111 11111111 1223588999999998
Q ss_pred cCC-CEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCC--CCEEEEEECCCeEEEEEcCCceeeeeeccccc
Q 001490 788 KND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD--NNVIAIGMDDSTILIYNARSSEVISKLEGHSK 863 (1068)
Q Consensus 788 ~dg-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d--~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~ 863 (1068)
|-. -.+.+++ |.++++||..|.+....|+ -.+.|.+-++||-. -.++|+|..|-.|++.|+.+|.....+.||.+
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 844 4444555 8999999999999888886 55667777777621 35888999999999999999999999999999
Q ss_pred CeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceee-------eeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCe
Q 001490 864 RVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQT-------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 934 (1068)
Q Consensus 864 ~V~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~ 934 (1068)
.|.++.|+|...+ |++|+.||.|++||+....... .+..+..+....+.+.|..++|+.||.++++ +.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 9999999998776 6799999999999998641100 0111112222233358999999999999998 89999
Q ss_pred EEEEECCCceeeeeecc--CCCc---CEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccc
Q 001490 935 LAIYEAEELTCLKQWFP--ISSV---PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1009 (1068)
Q Consensus 935 i~vwd~~~~~~~~~~~~--~h~~---~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1068)
+++|+..+|+....-+. .|+. .-..+. +.+...++---.|+.+.++++-+|+.+..+..+ . -..
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--------~--k~i 338 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--------L--KRI 338 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--------c--cee
Confidence 99999998865432111 1211 111122 445455555556789999999999999888722 1 233
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001490 1010 HAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 1010 ~~~~~~p~~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
.|.++-| +-+...+|+.|+.|..|-..
T Consensus 339 ~c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 339 NCAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEeecC-chhhhhccccCCcccccccc
Confidence 4677888 67889999999999999763
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=188.14 Aligned_cols=282 Identities=15% Similarity=0.215 Sum_probs=213.7
Q ss_pred eEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490 375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 454 (1068)
Q Consensus 375 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 454 (1068)
..|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6789999999999999999 8999999999999999999999
Q ss_pred eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC----cEEEEEEccCCCEEEEEeeCCCCc
Q 001490 455 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 455 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
+.+. ...+|+.+.|+|......+++--... -.+-++.............+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9886 78899999999987766655544333 44444444222221111111 1233468899999999975 6
Q ss_pred eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE---------EEEeCCCCCCCC
Q 001490 531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL---------TTIDAGGGLPEN 601 (1068)
Q Consensus 531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v 601 (1068)
|.+.++|..+-+++..++-.. ...|..+.++..|++++.-+.|+.|+.|+...-... +.+..--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 779999999999888877543 367899999999999999999999999998631111 111100001123
Q ss_pred ceEEEecCCCEEEEEEC-CCeEEEEECCCCceeeeccccc-cceeeeEEcCCccccccccccCeeeecCCCCCCccccee
Q 001490 602 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 679 (1068)
Q Consensus 602 ~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 679 (1068)
.+++|+.+|.+++.++. ...++||....|..++.+.|.+ +....+.+.|.... +++
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s 310 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS 310 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence 57899999999887764 5789999999999999999887 55666677654332 333
Q ss_pred ecccccceeeccc
Q 001490 680 VEAENKSEVEKPL 692 (1068)
Q Consensus 680 ~~~d~~i~~wd~~ 692 (1068)
. ..|.+.+|...
T Consensus 311 i-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 311 I-ASGVVYIWAVV 322 (405)
T ss_pred c-cCCceEEEEee
Confidence 3 55888999854
No 143
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=1.4e-21 Score=198.75 Aligned_cols=253 Identities=19% Similarity=0.317 Sum_probs=202.2
Q ss_pred ecCCCcceEEEEECCCC-CEEEEEeCCcEEEEEEccCCCcc-------cceEEEccccccEEEEEEcCCCCcEEEEEEeC
Q 001490 368 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 439 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~ 439 (1068)
...|.+.|..+..-|.. ..+|+.+..+.|.|||...-... +....+.+|.+.-..++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 44589999999999965 55666788899999998754322 233478899998889999998765 7999999
Q ss_pred CCcEEEEECCCCc-------eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC--CCCceEEecCCCCcEEE
Q 001490 440 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR 510 (1068)
Q Consensus 440 d~~i~iwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~i~~ 510 (1068)
|++|++||+.... ....+.+|...|..++|++. +..++++++.|+.+.+||.+ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987543 24567899999999999987 44689999999999999999 55666778889999999
Q ss_pred EEEccCC-CEEEEEeeCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecCCC-EEEEEECCCeEEEEEcCCCe
Q 001490 511 MAYSANG-RRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 587 (1068)
Q Consensus 511 ~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 587 (1068)
++|+|-+ ..||+++. |++|.+||+++- ..+.++.+|. ..|..+.|+|... .+++++.|+.+.+||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 9999955 55666664 678999999874 4677788887 9999999999865 45668899999999996422
Q ss_pred EE------------EEEeCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEECCC
Q 001490 588 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 629 (1068)
Q Consensus 588 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~ 629 (1068)
.. -.+...++...|..+.|+|+.. .+++.++|+.+.||....
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 21 1244456677799999999765 577788999999999874
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.2e-21 Score=204.59 Aligned_cols=324 Identities=13% Similarity=0.169 Sum_probs=240.8
Q ss_pred eeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEE
Q 001490 365 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 444 (1068)
Q Consensus 365 ~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 444 (1068)
..++.||++.|.+++..|.|.+||+|+.||+|+||.+.||.+++.. ...+.|.|++|+|.+..-+|+.+- ...+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceE
Confidence 3468899999999999999999999999999999999999988743 234579999999998864555544 44477
Q ss_pred EEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEE----EcCCcEEEEeCCCCC----ceEEecCCCCcEEEEEEccC
Q 001490 445 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN 516 (1068)
Q Consensus 445 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----s~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d 516 (1068)
|-|..-|..+..-. . ...|+++ ..++.+..|.-.... .+.....+...|..+.|+.+
T Consensus 468 ivnp~~G~~~e~~~--t-------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP--T-------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred EeCccccchhhhcc--h-------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 77755553221110 0 0111111 234567778654222 23355567789999999999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCC
Q 001490 517 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 596 (1068)
Q Consensus 517 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 596 (1068)
|.||++...++ +...|.|.++..+.....|.... +.+.++.|+|...++++++. ..|+|||+....++..+...
T Consensus 533 GDYlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg- 606 (733)
T KOG0650|consen 533 GDYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG- 606 (733)
T ss_pred CceEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC-
Confidence 99999987654 36679999998777666665544 78999999999999998875 57999999987777666533
Q ss_pred CCCCCceEEEecCCCEEEEEECCCeEEEEECCCC-ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcc
Q 001490 597 GLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 675 (1068)
Q Consensus 597 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1068)
...|..++.+|.|..|++++.|+.+..+|+.-. ++.+.++-|...++++++++ .-.
T Consensus 607 -~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~----------------------ryP 663 (733)
T KOG0650|consen 607 -SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK----------------------RYP 663 (733)
T ss_pred -CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc----------------------ccc
Confidence 345889999999999999999999999999854 67888999999999999974 445
Q ss_pred cceeecccccceeecccccCCcccceeecCC---cccccc----EEEEEEecCCceEEEeecCccEEEE
Q 001490 676 PEISVEAENKSEVEKPLFARPSECQSLLLPS---KVKANK----ISRLTYNNGGQAIFALASNGVHLMW 737 (1068)
Q Consensus 676 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---~~~~~~----i~~l~~s~~g~~l~~~~~dg~i~iw 737 (1068)
++++++.|+++.++.-..........+..|. .+|... |....|+|...+|++++.||+|++|
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 6788888888888763322211111111111 234433 8888999999999999999999998
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4e-23 Score=220.30 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=213.4
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
...|...|.++..-..++.+++|+.|..+-+|.+..-..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 33588899999987788999999999999999987654443 5789999999999999988 899999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 527 (1068)
++.++.++++.||...+.++.|+| -+.+.++++.|+.+++||.+..++...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999987 5678999999999999999999999999999999999999999999999875
Q ss_pred CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490 528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 607 (1068)
Q Consensus 528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 607 (1068)
+..+.+||...|+....|.+|. +.+.++.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6789999999999999999998 89999999999888888999999999999998888777655 4579999999
Q ss_pred cCCCEEEEEECC
Q 001490 608 KNGTLLAVIANE 619 (1068)
Q Consensus 608 ~~~~~l~~~~~d 619 (1068)
|++..+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999999888664
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6.3e-21 Score=205.45 Aligned_cols=243 Identities=16% Similarity=0.236 Sum_probs=196.9
Q ss_pred EEEEEec-CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCC-C
Q 001490 714 SRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-A 791 (1068)
Q Consensus 714 ~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~ 791 (1068)
..+.|.. +.++|++++.+|.|.+||+..... . .....+. +|...+.++.|++-. .
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------n--k~l~~f~--EH~Rs~~~ldfh~tep~ 147 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------N--KLLTVFN--EHERSANKLDFHSTEPN 147 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCcccc-------------------c--hhhhHhh--hhccceeeeeeccCCcc
Confidence 3344442 456788889999999999875210 0 1111122 399999999999865 5
Q ss_pred EEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-ceeeeeecccccCeEEEE
Q 001490 792 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLV 869 (1068)
Q Consensus 792 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~ 869 (1068)
+|++|+ ||+|++||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++- .++...+.+|.++|.++.
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n 227 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN 227 (839)
T ss_pred EEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence 667777 899999999999999999998899999999998899999999999999999975 457788899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE----EeCCeEEEEECCCcee
Q 001490 870 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTC 945 (1068)
Q Consensus 870 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~----~~d~~i~vwd~~~~~~ 945 (1068)
|+|++.+|||||+|++|+|||..+++.....++++. .++..+.|-|+..+.++ ..|..|+|||++..-.
T Consensus 228 whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 228 WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred ecCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence 999999999999999999999998765554455544 36899999999877544 3678899999998877
Q ss_pred eeeeccCCCcCEEEEEEec-CCCEEEEEECCCcEEEEEcCCC
Q 001490 946 LKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 986 (1068)
Q Consensus 946 ~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vwd~~~~ 986 (1068)
....+..|...++.++|-. |-..|.+++.||+|..-.++++
T Consensus 301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 301 PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 7777888999999999976 5678899999998876555443
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=2.3e-20 Score=196.72 Aligned_cols=286 Identities=17% Similarity=0.219 Sum_probs=207.3
Q ss_pred CCCCeEEEEEcCcCcEEEEecCCCcce-eeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEE
Q 001490 320 PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 398 (1068)
Q Consensus 320 pdg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~v 398 (1068)
|+.+++||.+..||.|.++|.....-. ....+ .....|...|..+.|-|....|++++.|.++++
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEccCCceeee
Confidence 455679999999999999998764322 11111 114579999999999997788999999999999
Q ss_pred EEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc--------------------------
Q 001490 399 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-------------------------- 452 (1068)
Q Consensus 399 wd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-------------------------- 452 (1068)
||+++++..... .+.||.+.|.+++|.|++.. .+++|+.||.|.|||+.-..
T Consensus 127 Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 127 WDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 999998876643 46799999999999999886 89999999999999985322
Q ss_pred -eeeEeccCCCcEEE---EeeeecCCccEEEEEEc-CCcEEEEeCCCCCceEE--------ecCC---CCcEEEEEEccC
Q 001490 453 -RTYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSAN 516 (1068)
Q Consensus 453 -~~~~~~~h~~~v~~---i~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~~~s~d 516 (1068)
.+.....+...|.+ +.+. .|...|++++. |+.|+|||++....... +..+ ...+.++.....
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred ccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 01112234444444 2232 25568999887 99999999987654332 2222 235778888888
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE-EEEe
Q 001490 517 GRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTID 593 (1068)
Q Consensus 517 ~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~ 593 (1068)
|.+|++... |+.|+.||+.+- .++..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.- ..+.
T Consensus 283 Gt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~ 357 (720)
T KOG0321|consen 283 GTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL 357 (720)
T ss_pred CCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhhh
Confidence 888877665 667999999764 3445555544222222 2346899999999999999999999875543 3333
Q ss_pred CCCCCCCCceEEEecC-CCEEEEEECCCeEEEEECCCC
Q 001490 594 AGGGLPENPRICFNKN-GTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 594 ~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
+ +...|.+++|.|. -.-++++++|.++++|++..+
T Consensus 358 G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 358 G--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred C--cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3 3456899999883 334666699999999999654
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=8.4e-19 Score=184.98 Aligned_cols=175 Identities=18% Similarity=0.257 Sum_probs=137.4
Q ss_pred cEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce
Q 001490 419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 498 (1068)
Q Consensus 419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 498 (1068)
.|..++|-|||.+++++. +..+.+||...|..+.++++|.+.|++++++. ||+.+++|+.|..|.+|.-......
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEcc--CCceeccCCCceeEEEeccccccee
Confidence 789999999999744443 44699999999999999999999999999965 8899999999999999975543332
Q ss_pred EEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeE
Q 001490 499 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 578 (1068)
Q Consensus 499 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 578 (1068)
. -.|...|.||.|+|-...|++|+-+. .-+|........ +.+. ...+.+++|..||++++.|-.+|+|
T Consensus 89 k--YSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~-K~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 89 K--YSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVS-KHKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred e--eccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHH-hhhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 2 24777899999999999999998532 667876554332 2221 2578999999999999999999999
Q ss_pred EEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490 579 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 610 (1068)
Q Consensus 579 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 610 (1068)
.|-+......+..-...+...+|.+++|+|..
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCC
Confidence 99876544444443444455789999999964
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.8e-22 Score=211.01 Aligned_cols=239 Identities=11% Similarity=0.206 Sum_probs=213.8
Q ss_pred eecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC
Q 001490 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 383 (1068)
Q Consensus 304 ~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd 383 (1068)
+....|...|.|+..-..++ ++++|+.|..+-+|.+..-..+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 44557888999999866665 889999999999999876555433 7789999999999999
Q ss_pred CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490 384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 463 (1068)
Q Consensus 384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 463 (1068)
..+|++|+.+|+|++||++.++.++ ++.+|...+..+.|+|-+. +.++|+.|+.+++||++...+.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999988777 7889999999999999999 7899999999999999988899999999999
Q ss_pred EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001490 464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 543 (1068)
Q Consensus 464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 543 (1068)
|..+.|.| +|.+++++++|.++++||+..++....+..|...+.++.|+|..-+++.|+. +..+++||+++.+.
T Consensus 157 v~~l~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEeecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 99999966 8899999999999999999999999999999999999999999988988876 66899999999888
Q ss_pred eeEEeccccccCCeEEEEEecCCCEEEEEECCC
Q 001490 544 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 576 (1068)
Q Consensus 544 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 576 (1068)
+....... ..|.+..|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87777665 8899999999999888876543
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=1.2e-19 Score=181.51 Aligned_cols=308 Identities=15% Similarity=0.167 Sum_probs=220.2
Q ss_pred ecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCC
Q 001490 305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 384 (1068)
Q Consensus 305 ~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg 384 (1068)
.++.|+ +|..+.|.+++...+|||+.|..|+||-++.++.-..- ....-...|..|...|+++.|+|+|
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence 345665 99999999988757899999999999999765543210 0011122388899999999999999
Q ss_pred CEEEEEeCCcEEEEEEcc--------C-----CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490 385 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 451 (1068)
Q Consensus 385 ~~las~~~d~~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 451 (1068)
..||+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|..+++||+..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999876 3 222233446788999999999999999 8999999999999999999
Q ss_pred ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec-------------------CCC----CcE
Q 001490 452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGC 508 (1068)
Q Consensus 452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~i 508 (1068)
..+..+..|...+..++|.| -++++++-+.|...+.+.+...+...... .|. .-.
T Consensus 156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 99999999999999999976 45788888888766666554333221110 001 124
Q ss_pred EEEEEccCCCEEEEEeeC----CC-CceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecC-----------------
Q 001490 509 TRMAYSANGRRLFSCGTS----KE-GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------------- 565 (1068)
Q Consensus 509 ~~~~~s~d~~~l~~~~~~----~~-~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------------- 565 (1068)
..++|+|||.++++.... +. ..+..++++-.. .++...+.+.. .....+.|+|-
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence 568999999999875431 11 023345554331 22233333333 44555555541
Q ss_pred CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCc
Q 001490 566 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 631 (1068)
Q Consensus 566 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 631 (1068)
-+.+++....+.|++||.++..++.....- +...++.++|++||..+++.+.||...+...+..+
T Consensus 311 yrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 311 YRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 123344444567999999998888776532 23568999999999999999999998887776543
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1e-19 Score=176.80 Aligned_cols=294 Identities=15% Similarity=0.263 Sum_probs=213.4
Q ss_pred ecccCCCCceEEEEcC----CCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 305 TLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 305 ~l~~h~~~V~~v~~sp----dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
.+.+|+.+|..++|.+ +...++|+.+. ..+.||.....--++. ++...-..|...-..++|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcsw 97 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCSW 97 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEEE
Confidence 3457888999999983 33346666655 6899999865332211 111112347788889999
Q ss_pred CCC----CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490 381 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 456 (1068)
Q Consensus 381 spd----g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 456 (1068)
+-| .-+||+|+.-|.|+|.|+.+++... .+.+|.+.|+.+.|.|+..+ ++++++.|..|++||+++..++..
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~V 173 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAV 173 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEE
Confidence 875 3478999999999999999988766 67799999999999999877 899999999999999999999987
Q ss_pred e---ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE------e----------------------cCCC
Q 001490 457 F---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------Y----------------------DAPG 505 (1068)
Q Consensus 457 ~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~------~----------------------~~~~ 505 (1068)
| .||.+.|.++.|+. +|.++++++.|.++++|++...+.... + ..|.
T Consensus 174 fGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr 251 (385)
T KOG1034|consen 174 FGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR 251 (385)
T ss_pred ecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence 7 57999999999976 667999999999999999873321110 0 0111
Q ss_pred CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC-CCCee-------------eeEEeccccccCCeEEEEE--ecCCCEE
Q 001490 506 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVVHF--DTAKDQI 569 (1068)
Q Consensus 506 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~-~~~~~-------------~~~~~~~~~~~~~v~~~~~--~~~~~~l 569 (1068)
..|.|+.|- |.++++-+. ++.|..|.. +-++. +..+.-. ...|.-+.| .|-++.|
T Consensus 252 nyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 252 NYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKML 322 (385)
T ss_pred chHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHHH
Confidence 122222222 456666543 667999987 21211 1222222 255555554 5668899
Q ss_pred EEEECCCeEEEEEcCCCeE--EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490 570 LAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 628 (1068)
Q Consensus 570 ~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 628 (1068)
+.|...|.|++||++...+ ..++........|...+|+.||..|+..++|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999987665 2344444444568999999999999999999999999854
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=8.2e-20 Score=192.63 Aligned_cols=287 Identities=16% Similarity=0.139 Sum_probs=202.5
Q ss_pred ceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001490 723 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 801 (1068)
Q Consensus 723 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i 801 (1068)
..|+.+..+|.|.++|....... ++... +.. ...|...|..+.+-|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~-lk~----~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQ-LKK----PLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhh-hcc----cccccceeEeeccCCCceeEEEccCCcee
Confidence 44666677899999986543221 11000 111 114899999999999667777776 7889
Q ss_pred EEEEccCceeEEE--ecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce--------------------------
Q 001490 802 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-------------------------- 853 (1068)
Q Consensus 802 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-------------------------- 853 (1068)
++||+++.+++.. +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999988877 889999999999999888999999999999999985321
Q ss_pred -eeeeecccccCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCceeeee-ee--ecCCCcccCCCCceEEEEeeCCC
Q 001490 854 -VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR-SL--QTPDGVMTLAPSETHIQFHKDQT 925 (1068)
Q Consensus 854 -~~~~~~~h~~~V~~---l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~spdg~ 925 (1068)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+......... .. .....+..-...+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 12223345566666 666678899999988 999999999875432211 11 11111111113567777777788
Q ss_pred EEEE-EeCCeEEEEECCCceeee-eeccCCC--cCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCC
Q 001490 926 RFLL-VHETHLAIYEAEELTCLK-QWFPISS--VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1001 (1068)
Q Consensus 926 ~la~-~~d~~i~vwd~~~~~~~~-~~~~~h~--~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1001 (1068)
+|.+ +.|+.|+.|++.+-..-. ..+.++. .--..-..|||+.+|++|+.|...++|.+.+-+.- +...+.+
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~----~~~l~Gh- 359 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP----PALLLGH- 359 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC----hhhhhCc-
Confidence 8877 899999999998644322 1123331 11123346899999999999999999999987654 2222333
Q ss_pred CccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001490 1002 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus 1002 ~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
.+.+.+++|.|.+-.-++|+++|.++.+|++..
T Consensus 360 ----t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 360 ----TREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ----ceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 366678888886667789999999999999954
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.9e-19 Score=172.14 Aligned_cols=257 Identities=13% Similarity=0.178 Sum_probs=191.7
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCC-cccceEEEccccccEEEEEEcCC--CCcEEEEEEeCCCcEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 444 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~ 444 (1068)
-.+|.+-|.++.|.+-|+++|+|+.|++|+|||.+... ........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 45799999999999999999999999999999964433 34444467789999999999654 66 899999999999
Q ss_pred EEECCC------C---ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE------ec-------
Q 001490 445 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------YD------- 502 (1068)
Q Consensus 445 iwd~~~------~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~------~~------- 502 (1068)
||.-.. | ....++......|+.++|.|..-|-.|++++.||.+|+|+......... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 1235666778899999999999999999999999999998654332221 11
Q ss_pred CCCCcEEEEEEcc---CCCEEEEEeeCC-CCceeEEEEeCCCCe----eeeEEeccccccCCeEEEEEecCC----CEEE
Q 001490 503 APGLGCTRMAYSA---NGRRLFSCGTSK-EGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 570 (1068)
Q Consensus 503 ~~~~~i~~~~~s~---d~~~l~~~~~~~-~~~~~i~~wd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 570 (1068)
.+..+..|+.|+| ...+|++++.+. ...+.++||....+. .+.++.++. .+|+.++|.|+- ..|+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 2334678899987 345777776431 122356777654332 344556666 999999999973 4678
Q ss_pred EEECCCeEEEEEcCCCe-----------------EEEEEe-CCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 571 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 571 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
+++.|| |+||++.... .+..+. ..+|...|..+.|+-.|..|++.++||.|++|...-.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 899999 9999987311 122222 3344557999999999999999999999999986643
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=183.10 Aligned_cols=251 Identities=15% Similarity=0.178 Sum_probs=193.1
Q ss_pred eEEEEECC-------CCCEEEEEeCCcEEEEEEccCCCcccceEE------------------EccccccEEEEEEcCCC
Q 001490 375 VNRVVWSP-------DGSLLGVAYSKHIVQLYAYHGGSDARQQLE------------------IDAHVGNVNDLAFSAPC 429 (1068)
Q Consensus 375 V~~~~~sp-------dg~~las~~~d~~i~vwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~d~ 429 (1068)
..|++|.. -|+|+|.|+.|..|.|||+.-...+.+... -.+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 34666643 378999999999999999864333222222 23799999999999887
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEE
Q 001490 430 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT 509 (1068)
Q Consensus 430 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~ 509 (1068)
+. +|++||.|.+|++||+.+|++..++..|.+.|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 76 8999999999999999999999999999999999999986 567999999999999999985333322222345788
Q ss_pred EEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecCCC-EEEEEECCCeEEEEEcCCCe
Q 001490 510 RMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 587 (1068)
Q Consensus 510 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 587 (1068)
.++|.|.....+.++. .+|+|+-+|++.. +++.+++.|. +.|.++++++... .+.+++.|+.|++|++....
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 9999998776666653 2788999999864 8899999988 8999999988654 56679999999999987644
Q ss_pred EEEEEeCCCCCCCCceEEEecCC-CEEEEEECCCeEEEEECCCCcee
Q 001490 588 LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSV 633 (1068)
Q Consensus 588 ~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 633 (1068)
........-......|.++.|+- -.++.|+..+.+++||+.+...+
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 43222211122234566777754 46778888889999999877544
No 155
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.7e-20 Score=200.72 Aligned_cols=286 Identities=15% Similarity=0.252 Sum_probs=217.9
Q ss_pred cceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccc-eEEEcc---ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEEC
Q 001490 373 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 448 (1068)
Q Consensus 373 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~---h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 448 (1068)
....+|+..++-..++.++.. .+.||.+........ ...+.. -...+..+.|..-... +|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 456677788888888877544 578887765432111 111111 1124567788754444 8999999999999999
Q ss_pred CC---CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCEEEEEe
Q 001490 449 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCG 524 (1068)
Q Consensus 449 ~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 524 (1068)
.. .+.+..|..|...+.+++|++. ...+|++||.||+|++||++.......+......|+.+.|+| .+..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHST-EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccC-CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 5667788999999999999976 346999999999999999999999999988888999999999 556677766
Q ss_pred eCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490 525 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 603 (1068)
Q Consensus 525 ~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 603 (1068)
. .|.+.+||++.. ++...+..|. ++|.++.|+|++.+|++||.|+.|+|||+.+.+.......+. ..++..
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 4 668999999864 4556677777 999999999999999999999999999998765443333222 356899
Q ss_pred EEEecCCC-EEEEEEC--CCeEEEEECCCC-ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCccccee
Q 001490 604 ICFNKNGT-LLAVIAN--ENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 679 (1068)
Q Consensus 604 v~~s~~~~-~l~~~~~--dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 679 (1068)
|.|-|+.. +||+++. |..|+|||+... -+...+..|...++.++|. +.|...+.+
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s 327 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS 327 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence 99999654 5665543 789999999865 4556777888888888886 345666788
Q ss_pred ecccccceeec
Q 001490 680 VEAENKSEVEK 690 (1068)
Q Consensus 680 ~~~d~~i~~wd 690 (1068)
++.|+++..-.
T Consensus 328 ~sKD~tv~qh~ 338 (839)
T KOG0269|consen 328 CSKDGTVLQHL 338 (839)
T ss_pred ecCccHHHHhh
Confidence 88888765433
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.2e-19 Score=170.46 Aligned_cols=268 Identities=13% Similarity=0.201 Sum_probs=193.0
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC--CC
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 384 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--dg 384 (1068)
.+|.+-|.++.|.+-|+++ |+|+.|++|+|||.+...-.-. . ....+.|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~~~s~~W~-------~--------Ts~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRM-ATCSSDQTVKIWDSTSDSGTWS-------C--------TSSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCcee-eeccCCCcEEEEeccCCCCceE-------E--------eeeEEecCCcEEEEEecCcccc
Confidence 4899999999999999965 9999999999999754432211 1 112567999999999976 49
Q ss_pred CEEEEEeCCcEEEEEEccCC------CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCce-----
Q 001490 385 SLLGVAYSKHIVQLYAYHGG------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR----- 453 (1068)
Q Consensus 385 ~~las~~~d~~i~vwd~~~~------~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~----- 453 (1068)
+.+|+++.|+++.||.-... ..-....++......|+++.|.|....+.+++++.||.++||+.-..--
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 99999999999999976311 1112233566677899999999998777999999999999998654322
Q ss_pred -eeEec-------cCCCcEEEEeeeecCCc-cEEEEEEcC-----CcEEEEeCCCCCce----EEecCCCCcEEEEEEcc
Q 001490 454 -TYSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSA 515 (1068)
Q Consensus 454 -~~~~~-------~h~~~v~~i~~~~~~~~-~~l~s~s~d-----g~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~ 515 (1068)
.+.++ .+..+..++.|+++.-. .+|+.|+.+ +.++||........ ..+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 22332 35667778888764332 466666655 47899987665532 35667888999999999
Q ss_pred CC----CEEEEEeeCCCCceeEEEEeCCCCe-----------------eeeEEeccccccCCeEEEEEecCCCEEEEEEC
Q 001490 516 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 574 (1068)
Q Consensus 516 d~----~~l~~~~~~~~~~~~i~~wd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 574 (1068)
+- ..|++++. +| |+||.+.... .+..+..+..|++.|..+.|+-.|..|.+.+.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 53 35666653 44 9999887311 12233333334499999999999999999999
Q ss_pred CCeEEEEEcCC---CeEEEEEeCC
Q 001490 575 DHVIKIWDMNK---VQLLTTIDAG 595 (1068)
Q Consensus 575 dg~i~iwd~~~---~~~~~~~~~~ 595 (1068)
||.|++|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997653 3344455444
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.3e-16 Score=184.80 Aligned_cols=373 Identities=24% Similarity=0.393 Sum_probs=285.5
Q ss_pred EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc-eeeEeccCCC-cEEEEeeeecCCcc-EEEEEEc-CCcE
Q 001490 412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKI 487 (1068)
Q Consensus 412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~i~~~~~~~~~-~l~s~s~-dg~i 487 (1068)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3457899999999999999 78888899999999998887 6677766443 77777775 55665 5555444 9999
Q ss_pred EEEeCCC-CCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC
Q 001490 488 KAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 566 (1068)
Q Consensus 488 ~vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 566 (1068)
.+|+... ......+..+...+..++|+|+++.+++++. .++.+++|+...+..+..+.+|. ..+.+++|+|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 210 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDG 210 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCc
Confidence 9999998 7777888889999999999999998877753 36789999999988888888877 899999999999
Q ss_pred C-EEEEEECCCeEEEEEcCCCeEEE-EEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCce-eeeccccccce
Q 001490 567 D-QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNL 643 (1068)
Q Consensus 567 ~-~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i 643 (1068)
. .+++++.|+.|++||...+..+. .+..+... . ...|++++..+++++.|+.+++|+...... +...
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------- 280 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL------- 280 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-------
Confidence 8 44445899999999998777777 56555432 2 228999998999999999999999886532 1110
Q ss_pred eeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCc
Q 001490 644 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ 723 (1068)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 723 (1068)
..|...+.++.+.|++.
T Consensus 281 ---------------------------------------------------------------~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 281 ---------------------------------------------------------------SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred ---------------------------------------------------------------ecCCccEEEEEECCCCC
Confidence 11456777888888888
Q ss_pred eEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE--eCCeE
Q 001490 724 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVI 801 (1068)
Q Consensus 724 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~dg~i 801 (1068)
.+++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 888888888888886543321 11110 11255578888884343566666 36889
Q ss_pred EEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEE-EECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEE
Q 001490 802 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 880 (1068)
Q Consensus 802 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 880 (1068)
.+|+.............. .+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..++++
T Consensus 354 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (466)
T COG2319 354 RLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430 (466)
T ss_pred EeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence 999998877333333222 288999998 7 55554 8899999999999988777766554779999999999999999
Q ss_pred eCCCcEEEEECCC
Q 001490 881 GGDAQIFVWDVDG 893 (1068)
Q Consensus 881 s~dg~i~iwd~~~ 893 (1068)
+.++.+++|+...
T Consensus 431 ~~~~~~~~~~~~~ 443 (466)
T COG2319 431 SSDNTIRLWDLKT 443 (466)
T ss_pred cCCCcEEEEeccC
Confidence 9999999999987
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=5e-17 Score=188.31 Aligned_cols=371 Identities=23% Similarity=0.349 Sum_probs=274.4
Q ss_pred ecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCc-ceeeeeeeeeeccccccceeeeeecCCC-cceEEEEE-C
Q 001490 305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 381 (1068)
Q Consensus 305 ~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~-s 381 (1068)
.+..|...|.++.|.+.+. .++.++.|+.+.+|+...+. .+.. +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 4578889999999999998 66888889999999998886 3322 22322 36777777 8
Q ss_pred CCCC-EEEEEeC-CcEEEEEEccC-CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC-CCcEEEEECCCCceeeEe
Q 001490 382 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 457 (1068)
Q Consensus 382 pdg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~ 457 (1068)
+++. +++..+. |+.+.+||..+ .... ..+..|...|..++|+|+++ .+++++. |+.+++|++.++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 4323 36778999999999999999 6777775 999999999999999999
Q ss_pred ccCCCcEEEEeeeecCCcc-EEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490 458 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 535 (1068)
Q Consensus 458 ~~h~~~v~~i~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 535 (1068)
.+|...|.++++.+ ++. .+++++.|+.|++||........ .+..+.... ...|++++.++++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 99999999999984 555 55555999999999888666665 466666654 3389999988886664 667999
Q ss_pred EeCCCCee-eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490 536 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614 (1068)
Q Consensus 536 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 614 (1068)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.+.+++..++
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence 99987664 44444444 889999999988899988888999999998887776665112222478888843435666
Q ss_pred EE-ECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccce-eecccccceeeccc
Q 001490 615 VI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL 692 (1068)
Q Consensus 615 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~ 692 (1068)
.+ ..|+.+.+|+............... +..+.+. ++ .... .+..++.+.+|+..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred EeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEecc
Confidence 65 6788999999988762222222211 4445554 22 2223 36778899999976
Q ss_pred ccCCcccceeecCCcccc-ccEEEEEEecCCceEEEeecCccEEEEeccC
Q 001490 693 FARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 741 (1068)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 741 (1068)
......... .. ..+....+++++..++.++.++.+++|+...
T Consensus 401 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 401 TGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 433222111 11 6788999999999999988899999998643
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=3e-19 Score=173.56 Aligned_cols=298 Identities=15% Similarity=0.214 Sum_probs=208.3
Q ss_pred ccccEEEEEEec----CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEE
Q 001490 709 KANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 784 (1068)
Q Consensus 709 ~~~~i~~l~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 784 (1068)
|..+|..++|.+ +...+++......+.+|+.+... +.++..... ...+......+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~-D~d~~Esfytc 95 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYA-DEDHDESFYTC 95 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeecc-CCCCCcceEEE
Confidence 667788888874 33445566666688888765421 122222222 11356666777
Q ss_pred EEecCC----CEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee-
Q 001490 785 ALSKND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL- 858 (1068)
Q Consensus 785 ~~s~dg----~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~- 858 (1068)
+++-|- .++|+++ -|.|+|.|..++++...+.+|...|+.+.+.|+..++|++++.|.+|++|++++..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 777643 3666666 6999999999999999999999999999999987899999999999999999999998887
Q ss_pred --cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee-------------eeeeecCCCccc-------CCCCce
Q 001490 859 --EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------CRSLQTPDGVMT-------LAPSET 916 (1068)
Q Consensus 859 --~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~-------~~~~v~ 916 (1068)
.||.+.|.++.|+++|.+++++|.|.++++|++...+... .+.+.....+.. +...|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 4699999999999999999999999999999998543211 011111111111 111233
Q ss_pred EEEEeeCCCEEEE-EeCCeEEEEEC-CCceeeeee------------ccCCCcCEEEEEEe--cCCCEEEEEECCCcEEE
Q 001490 917 HIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSI 980 (1068)
Q Consensus 917 ~~~~spdg~~la~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~l~fs--~dg~~l~t~~~dg~v~v 980 (1068)
|+.|- |.++++ +.++.|..|.. +-++.+... +.-....|+-+.|+ +-+++||.|...|.|++
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 33332 577787 78889999998 222221111 11225566666655 55789999999999999
Q ss_pred EEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001490 981 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus 981 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
||++..+.... ..+.++..+..++ ..+|+- |+.+|+...+|+.|.-||.
T Consensus 334 wdL~~~ep~~~----ttl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 334 WDLDNNEPPKC----TTLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EECCCCCCccC----ceEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 99998877511 1222222334444 456666 7899999999999999985
No 160
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-17 Score=179.95 Aligned_cols=605 Identities=12% Similarity=0.111 Sum_probs=359.0
Q ss_pred CCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC------C
Q 001490 311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------G 384 (1068)
Q Consensus 311 ~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd------g 384 (1068)
..-.++.|+|.| |+|.|+. ..|.+-|..+-+.+.. +.-|...|+.+.|.|- +
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 356789999998 6788876 6799999998888765 5668999999999873 1
Q ss_pred ------CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC---CCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490 385 ------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTY 455 (1068)
Q Consensus 385 ------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 455 (1068)
-+||++...|.|.+||...+..+. .+..|..++..++|-+ +.+. +|+.-....+|.+||..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 257888888999999999876554 5678889999999864 3434 56666668899999999999988
Q ss_pred EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC------ceEEec-CCCC----------------------
Q 001490 456 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYD-APGL---------------------- 506 (1068)
Q Consensus 456 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------~~~~~~-~~~~---------------------- 506 (1068)
..........++.+.|- |.+.+..-+..|.+.+-+.-... ....+. .+..
T Consensus 150 k~~ys~~iLs~f~~DPf-d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPF-DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCC-CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 87766666777777665 33455555556666555432111 111111 1100
Q ss_pred ---cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC--CCEEEEEECCCeEEEE
Q 001490 507 ---GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIW 581 (1068)
Q Consensus 507 ---~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iw 581 (1068)
-...++|+|.-+.++.....+ -+.++|++-..++....-.. +.+.-+.+-|+ ...+++.-.||.+.+|
T Consensus 229 fity~a~faf~p~~rn~lfi~~pr----ellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITFPR----ELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEecc----ceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 012356788665554444433 39999998888877776655 55556666665 4578999999999999
Q ss_pred EcCC----------------CeEEEEEeCCCCCCCCceEEEecC-CCEEEEEECCCeEEEEECCCCceeeecc-------
Q 001490 582 DMNK----------------VQLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG------- 637 (1068)
Q Consensus 582 d~~~----------------~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 637 (1068)
-.+. +.....+..-.... ....+..|. ...+++-..+|...+|.+.+++......
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 7654 22222221111111 122333443 4556666677888899888653221111
Q ss_pred ------------------------ccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccc
Q 001490 638 ------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 693 (1068)
Q Consensus 638 ------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 693 (1068)
+|.....+....|.....-..... ........-.+++.|...|+|.+.|+.+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p----~~n~~~~~~pLvAvGT~sGTV~vvdvst 456 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP----GGNTPAGTVPLVAVGTNSGTVDVVDVST 456 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC----CCCccceeeeeEEeecCCceEEEEEecc
Confidence 111111122111111110000000 0000011234678899999999999876
Q ss_pred cCCcccceeecCCccccccEEEEEEecCCceEEEeecC--ccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeec
Q 001490 694 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 771 (1068)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1068)
+........ |...|.++.|......+-.+... ....++ ...+.+-+..+|.......
T Consensus 457 ~~v~~~fsv------ht~~VkgleW~g~sslvSfsys~~n~~sg~v---------------rN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 457 NAVAASFSV------HTSLVKGLEWLGNSSLVSFSYSHVNSASGGV---------------RNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred hhhhhhhcc------cccceeeeeeccceeEEEeeeccccccccce---------------eeeEEEEEccccccccccc
Confidence 554443333 88899999998877644333221 100000 0134455666776444333
Q ss_pred CCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEe-CC---------------CCCE
Q 001490 772 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNV 834 (1068)
Q Consensus 772 ~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~~ 834 (1068)
+++ ..+.+|+.+..|.-|+||+..- +.-+.+||+++..+++.....-.-|+.+.|+ |. ..+.
T Consensus 516 l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~ 594 (1062)
T KOG1912|consen 516 LQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENL 594 (1062)
T ss_pred CCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhce
Confidence 332 4678999999999999999998 6779999998877766555444458888888 31 1123
Q ss_pred EEEEECCCeEEEEEcCC-------ceee-eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCC
Q 001490 835 IAIGMDDSTILIYNARS-------SEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 906 (1068)
Q Consensus 835 lasg~~dg~v~iwd~~~-------~~~~-~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 906 (1068)
++..+ +..+++.+.- +..+ ...+...-.+..++| .+..|+.|..+|.+.+||+........+-..
T Consensus 595 vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p--- 667 (1062)
T KOG1912|consen 595 VVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSP--- 667 (1062)
T ss_pred eeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCC---
Confidence 33333 2233333321 1111 111111123344666 4678999999999999998764321111111
Q ss_pred CcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCc--CEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001490 907 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 907 ~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~--~v~~l~fs~dg~~l~t~~~dg~v~vwd~~ 984 (1068)
.+. .......+-|....+++-...-+-+||.+....+..+ .+... ++..+.+......++ ..|.++++-.+.
T Consensus 668 ~~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~ 741 (1062)
T KOG1912|consen 668 DPR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMP 741 (1062)
T ss_pred Cch---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEecc
Confidence 111 1223334445433444445556889999888877765 34333 344444444444444 345588877766
Q ss_pred CCcEE
Q 001490 985 NLEVQ 989 (1068)
Q Consensus 985 ~~~~~ 989 (1068)
.....
T Consensus 742 mks~~ 746 (1062)
T KOG1912|consen 742 MKSPP 746 (1062)
T ss_pred ccCCc
Confidence 55443
No 161
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=7.6e-19 Score=170.44 Aligned_cols=409 Identities=10% Similarity=0.108 Sum_probs=258.2
Q ss_pred EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490 377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 456 (1068)
Q Consensus 377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 456 (1068)
-+.|||+|+|+|+++.- .+.|-|.++-+..+. -.--+.|..+.|..|..+ .+.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999765 688888887553321 122457889999999885 566678899999999998888888
Q ss_pred eccCCCcEEEEeeeecCCc-cEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490 457 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 535 (1068)
Q Consensus 457 ~~~h~~~v~~i~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 535 (1068)
+.....++.+++|+| || ..|.+..-+-+|.+|.+.+....... -....+..++|+|||++.+.++. +|....+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeec-ccHHHHHHH
Confidence 888889999999977 66 56677778999999999887665433 23335688999999999998874 222233333
Q ss_pred EeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEE
Q 001490 536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 615 (1068)
Q Consensus 536 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 615 (1068)
.....-..++.+.... ...+.+.|+|||+.+++ ||---.-.+..... .-++..++|+|.+++|++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~---~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeee---ccceeEEEeccccceEEe
Confidence 3333344455555555 66788999999987765 44221111111111 124788999999999999
Q ss_pred EECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccC
Q 001490 616 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 695 (1068)
Q Consensus 616 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 695 (1068)
|+.|+.+++.+--+-+.+..+- |...+ .|-+..+-..++.+
T Consensus 228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence 9999999997654433322211 00000 00010000000000
Q ss_pred CcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCC
Q 001490 696 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 775 (1068)
Q Consensus 696 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1068)
. -.-...++.|.|..- ...+|............. ..+..-.+.+ +. +
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~p---v~~~~lkp~t-------D~--p 315 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMTP---VKVHKLKPPT-------DF--P 315 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhhhhhhcc---eeeecccCCC-------CC--C
Confidence 0 000122333443321 011111100000000000 0000001111 11 1
Q ss_pred CCCCCeeEEEEecCCCEEEEEeC---CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc
Q 001490 776 NSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 852 (1068)
Q Consensus 776 ~~~~~v~~l~~s~dg~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 852 (1068)
+..-.+.-++||+|..|+++-.| +.+.+||+...+....+. ...+|.+..|.| +...|+.+.....+++|.....
T Consensus 316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence 23456778999999999999985 569999998776654443 456899999999 7778887877788999988754
Q ss_pred eeeeeecccccCeEEEEEcCCCCEEEEEeCCCc
Q 001490 853 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 885 (1068)
Q Consensus 853 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~ 885 (1068)
..+.. .+..-.|..+.|.-+|..++..+.|..
T Consensus 394 ~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 394 RVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 44433 333367999999999999999998874
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=7.1e-19 Score=178.62 Aligned_cols=311 Identities=13% Similarity=0.114 Sum_probs=225.7
Q ss_pred ECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecC
Q 001490 626 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 705 (1068)
Q Consensus 626 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 705 (1068)
++.+.......+.+.++|.+++|+|. .+.+++++|+..|.|-+||+.+.++.......+.
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~ 231 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT 231 (498)
T ss_pred ccccceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEec
Confidence 33444455566677888999999973 4567899999999999999975555544444444
Q ss_pred CccccccEEEEEEecC-CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEE
Q 001490 706 SKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 784 (1068)
Q Consensus 706 ~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 784 (1068)
. |..+|.++.|+|. -..+++.+.||++++-|+...... .++... .....+..+
T Consensus 232 ~--hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~v~s~~-------------~d~~~fs~~ 285 (498)
T KOG4328|consen 232 P--HSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------EVLSLD-------------TDNIWFSSL 285 (498)
T ss_pred c--CCccccceEecCCChhheeeeccCceeeeeeecchhhH-----------HHhhcC-------------ccceeeeec
Confidence 4 8899999999986 456888999999999887654220 001100 134556778
Q ss_pred EEecCCCEEEEEeC-CeEEEEEccCcee-EEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce----eeeee
Q 001490 785 ALSKNDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKL 858 (1068)
Q Consensus 785 ~~s~dg~~l~~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~~ 858 (1068)
.|+.+...++.+.+ |...+||..+... ...+.-|...|+.+++.|-...+||+++.|++.+|||+..-. ++...
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 88888888888875 8999999987654 666777888999999999888899999999999999997632 22334
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceeee-eeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCC
Q 001490 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 933 (1068)
Q Consensus 859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~---~~~~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~ 933 (1068)
..|...|.+..|||+|..|++.+.|..|+|||.. ..-.... .......+..- .....+|.||..+++++ .-.
T Consensus 366 ~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r 442 (498)
T KOG4328|consen 366 LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPR 442 (498)
T ss_pred ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccc---cchhheeCCCccEEEEeccCc
Confidence 4599999999999999889999999999999984 2111111 11111111111 34567899999999996 567
Q ss_pred eEEEEECCCceeeeeeccCCCcCEEE-EEEecCCCEEEEE-ECCCcEEEEEcCC
Q 001490 934 HLAIYEAEELTCLKQWFPISSVPISQ-ATFSCDCRMVFTS-FVDGTLSIHEASN 985 (1068)
Q Consensus 934 ~i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l~t~-~~dg~v~vwd~~~ 985 (1068)
.|-|+|...++.+.++.......|.+ ..|.|-+..+++| +..|.|+||.-..
T Consensus 443 ~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 443 PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 79999999999888765554545554 4688877645544 4567888886554
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.2e-20 Score=208.90 Aligned_cols=296 Identities=16% Similarity=0.258 Sum_probs=226.4
Q ss_pred ceEEEEcCCCCeEEEEEcCc----------CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490 313 PMSMDFHPVQHTLLLVGTNV----------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 382 (1068)
Q Consensus 313 V~~v~~spdg~~lla~gs~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp 382 (1068)
-..++|||++..++|+|... .++.||.+.-.... ..++...--.-..+-+.++|.+
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~--------------~dlk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES--------------SDLKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc--------------ccccccccccccccceeeeecc
Confidence 45689999998677877542 33444444211111 0000000111245788999999
Q ss_pred CCCE----EEEEeCCcEEEEEEccC---CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490 383 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 455 (1068)
Q Consensus 383 dg~~----las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 455 (1068)
.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.... +|++|+.||.|.|||+..-+...
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88889999999999876 3434444467789999999999999776 89999999999999998765554
Q ss_pred Eec--cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC--cEEEEEEccCCCE-EEEEeeCCCCc
Q 001490 456 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE 530 (1068)
Q Consensus 456 ~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~d~~~-l~~~~~~~~~~ 530 (1068)
+.. ...+.|.+++|+.. ..+.|++++.+|++.|||++..+.+..+..+.. .+..++|+|+... +++++ +.+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~ 231 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA 231 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence 442 24577899998744 557899999999999999999988877766654 5788999998754 44444 45568
Q ss_pred eeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490 531 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 608 (1068)
Q Consensus 531 ~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 608 (1068)
-.|.+||++. ...++++++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+ ..+..+.|+|
T Consensus 232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p 306 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP 306 (1049)
T ss_pred ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence 8999999875 45677888888 899999999987 788889999999999999999999998643 4688999999
Q ss_pred CC-CEEEEEECCCeEEEEECCCC
Q 001490 609 NG-TLLAVIANENRIKILETPES 630 (1068)
Q Consensus 609 ~~-~~l~~~~~dg~i~iwd~~~~ 630 (1068)
.. ..+++++-||.|.|+.+...
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcchhhhheeccceeeeeeecC
Confidence 54 48999999999999998865
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=8.5e-19 Score=179.05 Aligned_cols=294 Identities=15% Similarity=0.205 Sum_probs=214.3
Q ss_pred EEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEECCCCceeeeccccccceeeeEE
Q 001490 570 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 648 (1068)
Q Consensus 570 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 648 (1068)
..++....+++||.........+..+...+.+.++.|+.... .+++.+.|..+++|.-... . .
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~-~-------------- 69 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-T-P-------------- 69 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-C-C--------------
Confidence 344444579999998877776666666666789999988664 2333445778888865432 0 0
Q ss_pred cCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEe
Q 001490 649 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 728 (1068)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 728 (1068)
+|-+-... ....-.|++......+++++
T Consensus 70 ------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~sg 97 (673)
T KOG4378|consen 70 ------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEISG 97 (673)
T ss_pred ------------------------------------ccceeecc----------------ccchHHHHhhhhcceeeecc
Confidence 00000000 01112233334445789999
Q ss_pred ecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEcc
Q 001490 729 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVM 807 (1068)
Q Consensus 729 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~ 807 (1068)
+..+.|+|||+... +....+. +|...|+++.+.-...|||++++ |.|.|..+.
T Consensus 98 G~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK 151 (673)
T ss_pred CcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEecc
Confidence 99999999987632 1111122 48899999999999999999995 889999999
Q ss_pred CceeEEEecCCCC-CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee-cccccCeEEEEEcCCC-CEEEEEeCCC
Q 001490 808 TFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGGDA 884 (1068)
Q Consensus 808 ~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg-~~l~s~s~dg 884 (1068)
++....+|....+ .+.-+.|+|....+|.+++++|.|.+||+....+...+ +.|..+...|+|+|.. .+||+.|.|.
T Consensus 152 t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 152 TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence 9988888876544 55689999955667788999999999999987766544 5699999999999964 6788999999
Q ss_pred cEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCCeEEEEECCCceeeeeeccCCCcCEEEEEEe
Q 001490 885 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFS 963 (1068)
Q Consensus 885 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs 963 (1068)
.|.+||+........... ..+...++|+++|.+|++| ..|.|..||++..+........|...|++++|-
T Consensus 232 ki~~yD~~s~~s~~~l~y---------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLTY---------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred eEEEeecccccccceeee---------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 999999986442221111 1368899999999999995 778999999997766555577899999999998
Q ss_pred cCC
Q 001490 964 CDC 966 (1068)
Q Consensus 964 ~dg 966 (1068)
+.-
T Consensus 303 ~s~ 305 (673)
T KOG4378|consen 303 PSP 305 (673)
T ss_pred ecc
Confidence 764
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=7.9e-19 Score=179.28 Aligned_cols=288 Identities=14% Similarity=0.175 Sum_probs=218.0
Q ss_pred CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE--eCCcEEEEEEccCCCc-ccc
Q 001490 333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSD-ARQ 409 (1068)
Q Consensus 333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~--~~d~~i~vwd~~~~~~-~~~ 409 (1068)
..++|||+..-+....+. -......+.++.|+.... |+++ +.|..+++|.-..... +..
T Consensus 12 d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CceEEeecccccCccccc-----------------cCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccce
Confidence 679999997655443211 001123488999988664 4444 5677899997654311 111
Q ss_pred eEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEE
Q 001490 410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 489 (1068)
Q Consensus 410 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~v 489 (1068)
.....+. .-.|++...... ++++||..+.|+|||++...+.+.+++|...|+++.+.. ...+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEE
Confidence 1122222 334444444444 899999999999999998878888999999999999865 5579999999999999
Q ss_pred EeCCCCCceEEecCCC-CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCE
Q 001490 490 WLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568 (1068)
Q Consensus 490 wd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 568 (1068)
..+.++.....+.... ..+.-+.|++..+.+++...+ +|.|.+||+....++..+.. .|..+...++|+|....
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~ 222 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEA 222 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCccc
Confidence 9998888777776663 456789999998887765542 67899999988777655543 23588899999997655
Q ss_pred -EEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC-ceeeeccccccceeee
Q 001490 569 -ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKL 646 (1068)
Q Consensus 569 -l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~ 646 (1068)
+++.+.|..|.+||....+....+.... +...++|+++|.+|+.|...|.|..||++.. .++..+..|...|+++
T Consensus 223 l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 223 LLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred eEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence 4568999999999999887777776543 4689999999999999999999999999865 6788889999999999
Q ss_pred EEcCCc
Q 001490 647 SVNPIS 652 (1068)
Q Consensus 647 ~~~~~~ 652 (1068)
+|-+..
T Consensus 300 afq~s~ 305 (673)
T KOG4378|consen 300 AFQPSP 305 (673)
T ss_pred Eeeecc
Confidence 998654
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=7.7e-18 Score=168.79 Aligned_cols=302 Identities=13% Similarity=0.149 Sum_probs=217.8
Q ss_pred cccEEEEEEecCCc-eEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490 710 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 788 (1068)
Q Consensus 710 ~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 788 (1068)
..++.++.|.+++. .+++++.|..|++|.+........+ ......-.+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 35788899988877 8999999999999998765432111 0112222233 3999999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcc--------C--------ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC
Q 001490 789 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 851 (1068)
Q Consensus 789 dg~~l~~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 851 (1068)
+|..||+|+| |.+.+|-.. + +.....+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999995 889999765 3 345567788999999999999 999999999999999999999
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee---eecCCCccc------------CCCCce
Q 001490 852 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMT------------LAPSET 916 (1068)
Q Consensus 852 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~ 916 (1068)
|+....+.+|...|..++|.|-++++++-+.|...+.+.+.........- +....+... ...-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777665432211100 000000000 002356
Q ss_pred EEEEeeCCCEEEEE-----eC-----CeEEEEECCCceeeeeeccCCCcCEEEEEEec------------------CCCE
Q 001490 917 HIQFHKDQTRFLLV-----HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM 968 (1068)
Q Consensus 917 ~~~~spdg~~la~~-----~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~------------------dg~~ 968 (1068)
.++|+|||.+|++. .. +..++|+-.........+++-..+...+.|+| -+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999972 12 24567766544433333444456666667765 1223
Q ss_pred EEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001490 969 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus 969 l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~ 1040 (1068)
++.++ ...|+|||..+-.+++......|.. ...++|++ ||..|+..+.||-.-+--+...+
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nihy~~---------iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA---------ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeeeeee---------ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 44554 4579999999999987776333322 34799999 79999999999977666665444
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=5e-18 Score=164.60 Aligned_cols=289 Identities=14% Similarity=0.183 Sum_probs=206.9
Q ss_pred eEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC-------CCCCE
Q 001490 314 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGSL 386 (1068)
Q Consensus 314 ~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s-------pdg~~ 386 (1068)
..+.|||||..+ .+-+.|..+.+|++...---....-. .......... -.....|...+|- |+..+
T Consensus 53 kgckWSPDGSci-L~~sedn~l~~~nlP~dlys~~~~~~----~~~~~~~~~r--~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 53 KGCKWSPDGSCI-LSLSEDNCLNCWNLPFDLYSKKADGP----LNFSKHLSYR--YQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred ccceeCCCCceE-EeecccCeeeEEecChhhcccCCCCc----cccccceeEE--eccCCEEEEEEeeeccccCCCccce
Confidence 457899999854 66788899999998431100000000 0000000000 0123567777775 67889
Q ss_pred EEEEeCCcEEEEEEccCCCcccceEEEccccc---cEEEEEEcCCCCcEEEEEEeCCCcEEEEEC-CCCcee--eEe---
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF--- 457 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~--~~~--- 457 (1068)
+|+.+.+.-|++||.-+|+...... .-.|.+ .-.+++|+|||. .|++| ....|+++|+ +.|+.- +..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence 9999999999999999998644322 223444 346899999999 56654 5788999998 455432 211
Q ss_pred --ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490 458 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 535 (1068)
Q Consensus 458 --~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 535 (1068)
.+..+.+.+++|+|. +...++.++...++-+|.-...+....+.+|.+.|+.+.|.+||+.|++|+.. +..|..
T Consensus 202 ~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~ 277 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILC 277 (406)
T ss_pred ccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEEE
Confidence 234677888999886 55689999999999999989999999999999999999999999999999863 557999
Q ss_pred EeCCC-CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC-CeEEEEEeCCCCCCCCceEEEecCCCEE
Q 001490 536 WNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 613 (1068)
Q Consensus 536 wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 613 (1068)
||++. +.++..+..|......-.-....|++++|++|+.||.|++||+.+ +..+..+..+.. .++.++++|--.++
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpil 355 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPIL 355 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCccccee
Confidence 99985 556666777663222223345568899999999999999999998 676666665543 48999999998888
Q ss_pred EEEECC
Q 001490 614 AVIANE 619 (1068)
Q Consensus 614 ~~~~~d 619 (1068)
++++..
T Consensus 356 atssGq 361 (406)
T KOG2919|consen 356 ATSSGQ 361 (406)
T ss_pred eeccCc
Confidence 877654
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.5e-18 Score=170.28 Aligned_cols=262 Identities=17% Similarity=0.225 Sum_probs=185.2
Q ss_pred cccCCCCceEEEEcCCC-CeEEEEEcCcCcEEEEecCCCc-ceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC
Q 001490 306 LIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 383 (1068)
Q Consensus 306 l~~h~~~V~~v~~spdg-~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd 383 (1068)
...|.+.|..+.-++-| ..++|+=+..|.|.|||+..-- .+....+.+-+ +..-+...+.+|...=+.++|||-
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeecccc
Confidence 34677788888888765 3466777778999999985311 11000000000 011122237789999999999993
Q ss_pred -CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC---ceeeEecc
Q 001490 384 -GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEG 459 (1068)
Q Consensus 384 -g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 459 (1068)
-..|++|.--+.|++|...+|.-..-...+.+|+..|-.++|||..+. ++++|+-||+|+|||++.+ .++.+ +.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kA 300 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KA 300 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ec
Confidence 234778877788999999987644334457789999999999998776 8999999999999999988 33433 78
Q ss_pred CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC---ceEEecCCCCcEEEEEEccCCCE-EEEEeeCCCCceeEEE
Q 001490 460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVE 535 (1068)
Q Consensus 460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~~ 535 (1068)
|.+.|+.|.|+... .+|++|+.||+++|||++..+ .+..++.|..+|+++.|+|...- +++++. |.+|.+
T Consensus 301 h~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~----D~Qiti 374 (440)
T KOG0302|consen 301 HNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE----DNQITI 374 (440)
T ss_pred cCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----CCcEEE
Confidence 99999999997643 499999999999999998644 56688999999999999996554 444433 778999
Q ss_pred EeCCCCee--------e--------eEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEE
Q 001490 536 WNESEGAI--------K--------RTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 581 (1068)
Q Consensus 536 wd~~~~~~--------~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw 581 (1068)
||+....- . +.+--|+ ....+..+.|++.- .++++.+.|| +.||
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99863211 0 1111121 22467788888764 4666677777 4444
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=3.9e-17 Score=168.66 Aligned_cols=499 Identities=14% Similarity=0.117 Sum_probs=296.5
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEE-EEEE-----cCCCCcEEEEEEeCCCcE
Q 001490 370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAF-----SAPCKQISVITCGDDKTI 443 (1068)
Q Consensus 370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~-~l~~-----s~d~~~~~l~s~~~d~~i 443 (1068)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.. .... .+ ....|. .+-. ...+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 366778899999888877766555444445554432 2111 11 111111 1111 011111157778889999
Q ss_pred EEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEE
Q 001490 444 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 523 (1068)
Q Consensus 444 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 523 (1068)
.|.+ ..|+....+..|.+.+.+-.|++ ||.-|+++++||.|++|. +++-...++.....+|.|++|.|+...++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 78888888999999999998866 778899999999999997 3333444555566789999999999988887
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490 524 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 603 (1068)
Q Consensus 524 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 603 (1068)
.. +.+++=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||.. |..+..-..|. .+|++
T Consensus 164 ~g-----~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~e--y~ITS 232 (737)
T KOG1524|consen 164 QG-----GHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEE--YAITS 232 (737)
T ss_pred cC-----CeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhc--cceee
Confidence 53 357777777777777788888 999999999999999999999999999975 55555544443 46999
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccc
Q 001490 604 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 683 (1068)
Q Consensus 604 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 683 (1068)
++|+|+ +.+++++. +++++ +
T Consensus 233 va~npd-~~~~v~S~-nt~R~---~------------------------------------------------------- 252 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSY-NTARF---S------------------------------------------------------- 252 (737)
T ss_pred eeeccc-cceeeeee-eeeee---c-------------------------------------------------------
Confidence 999999 66776655 23331 1
Q ss_pred ccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCC
Q 001490 684 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 763 (1068)
Q Consensus 684 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1068)
....+.|..++||+||..++.+...|.+.+--.-..
T Consensus 253 -----------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq--------------------- 288 (737)
T KOG1524|consen 253 -----------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ--------------------- 288 (737)
T ss_pred -----------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehh---------------------
Confidence 013457888999999999988888887654211000
Q ss_pred CCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC
Q 001490 764 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 842 (1068)
Q Consensus 764 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 842 (1068)
.+ + -+.+=++. ....|.+-|+.++.+ ..+ .....+...+++- + +|+++. ..
T Consensus 289 -------~l--------~-------~~n~~~t~~~r~~I~vrdV~~~v~-d~L-E~p~rv~k~sL~Y--~-hLvvaT-s~ 340 (737)
T KOG1524|consen 289 -------QL--------V-------SGNLKATSKSRKSITVRDVATGVQ-DIL-EFPQRVVKFSLGY--G-HLVVAT-SL 340 (737)
T ss_pred -------hh--------h-------hccceeEeeccceEEeehhhhhHH-HHh-hCccceeeeeece--e-EEEEEe-cc
Confidence 00 0 00111122 245577777766544 222 2445666666654 3 343333 34
Q ss_pred eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEee
Q 001490 843 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 922 (1068)
Q Consensus 843 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 922 (1068)
.|++|.-........+.+....+.-+.-+. ..+++ ....+|.++..+...... ..+.+... .....=..|-
T Consensus 341 qvyiys~knwntpiiidgre~tr~lieq~e-k~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsL 411 (737)
T KOG1524|consen 341 QVYIYSEKNWNTPIIIDGREDTRNLIEQGE-KYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSL 411 (737)
T ss_pred EEEEEecCCccCcEEEeccccchhHhhhhh-hheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeec
Confidence 688887655443344444443332222111 12222 233446666655421111 01111111 0111112333
Q ss_pred CCCEEEE--EeC-CeEEEEEC-CCceeeeee-ccCCCcCEEEEEEec----CCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490 923 DQTRFLL--VHE-THLAIYEA-EELTCLKQW-FPISSVPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 923 dg~~la~--~~d-~~i~vwd~-~~~~~~~~~-~~~h~~~v~~l~fs~----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 993 (1068)
....|+. ..| .-+.+||. .+|+....- .-.|...|..++... +.+.++.-...+.++|=.+..-....++.
T Consensus 412 andtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~ 491 (737)
T KOG1524|consen 412 ANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY 491 (737)
T ss_pred ccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh
Confidence 3344555 233 35888998 666654321 112444555555543 44566666666666655444322111111
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001490 994 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~ 1040 (1068)
-. + -....++|+ |...+++|-.|+++.+|=.|...
T Consensus 492 Ki-----G-----TmVhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 492 KI-----G-----TMVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hh-----h-----hhhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 00 0 123457787 56789999999999999998665
No 170
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=162.44 Aligned_cols=378 Identities=12% Similarity=0.112 Sum_probs=245.4
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeEE
Q 001490 511 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 589 (1068)
Q Consensus 511 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 589 (1068)
.+|||+|+++++++. -.+.+-|..+-+..+.|... +.|.-+.|..|..++++ ...++.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~~-----yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR-----YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeee-----eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 579999999999974 36888888877766665553 46788899999888887 568889999999988877
Q ss_pred EEEeCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecC
Q 001490 590 TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 668 (1068)
Q Consensus 590 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1068)
..+... ..++.+++|||||+.+...+ -+-+|.+|.+.+.+....-.
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------------------------------- 131 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------------------------------- 131 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence 777643 45689999999997666554 58899999988764332111
Q ss_pred CCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCc
Q 001490 669 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 748 (1068)
Q Consensus 669 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 748 (1068)
....+..++|.+||++.+..+.-...-..++
T Consensus 132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i--------- 162 (447)
T KOG4497|consen 132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQI--------- 162 (447)
T ss_pred ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHH---------
Confidence 1123466788888887666554311000000
Q ss_pred cceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEE
Q 001490 749 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL 825 (1068)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l 825 (1068)
...+-|..-.. +.+ ..-..+.+.++|||..||+-. +-.|..|... -.+..+
T Consensus 163 -----~~c~~W~ll~~-----f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~------------lG~k~v 216 (447)
T KOG4497|consen 163 -----SSCKAWILLKE-----FKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG------------LGLKFV 216 (447)
T ss_pred -----HhhHHHHHHHh-----cCC----CcccccCceECCCCcEEEEecchhhheeeeeeec------------cceeEE
Confidence 01112221111 111 334556799999999998875 3444444332 357789
Q ss_pred EEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccC--------------------eEEEEEcCCCCEEEEEeCCCc
Q 001490 826 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR--------------------VTGLVFSDALNILVSSGGDAQ 885 (1068)
Q Consensus 826 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~--------------------V~~l~~spdg~~l~s~s~dg~ 885 (1068)
+|+| .+++|++|+.|+.++|-+--+-+....+- |-.. ..++.|.|.. -.
T Consensus 217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~---------~~ 285 (447)
T KOG4497|consen 217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD---------LE 285 (447)
T ss_pred Eecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhcccccccCCCc---------cc
Confidence 9999 99999999999999997766655443332 1111 1234444431 11
Q ss_pred EEEEECCCC-ce-----eeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeC---CeEEEEECCCceeeeeeccCCCcC
Q 001490 886 IFVWDVDGW-GI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE---THLAIYEAEELTCLKQWFPISSVP 956 (1068)
Q Consensus 886 i~iwd~~~~-~~-----~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d---~~i~vwd~~~~~~~~~~~~~h~~~ 956 (1068)
..+|..+.. .+ .....++.+.......-.+.-++||+|..++|+-.| +.+-+||+...+....+.. ..+
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~p 363 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHP 363 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccc
Confidence 223332210 00 001111111121111235778999999999999655 5699999998876665443 468
Q ss_pred EEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCc
Q 001490 957 ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1030 (1068)
Q Consensus 957 v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~ 1030 (1068)
|....|.|....|+.+.....+++|....-..++.-. ..+....+.|+- +|..++..+.|.-
T Consensus 364 iraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-----------~GF~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-----------KGFNIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred eeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-----------CCceeeeEEecC-CCcEEEEEcCCce
Confidence 9999999998888888888889999988754442211 124556788887 6888888888864
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=8.9e-18 Score=167.28 Aligned_cols=237 Identities=16% Similarity=0.260 Sum_probs=186.7
Q ss_pred eecCCCcceEEEEECC-CCCEEEEEeCCcEEEEEEccCCCcc----cceEEEccccccEEEEEEcCCCCcEEEEEEeCCC
Q 001490 367 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 441 (1068)
Q Consensus 367 ~l~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 441 (1068)
...||+++|..++|+| +...||+|+.|.+|.||.+..+... .....+.+|...|--++|+|.-.. +|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 3789999999999999 6778999999999999999766542 334578899999999999999876 888999999
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC-cEEEEEEccCCCEE
Q 001490 442 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 520 (1068)
Q Consensus 442 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l 520 (1068)
+|.+||+.+|+.+.++. |...|++++|+. ||.+|++.+.|..||+||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999988 999999999966 888999999999999999999998887766655 456677888998 6
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeE-EEEEeCCCCC
Q 001490 521 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL 598 (1068)
Q Consensus 521 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~ 598 (1068)
++.+.++-.+.++-+||...-+.-..+.... ....|.--.|.++.+.++. |-.|+.|+.|.+....+ ++.+......
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 6666677778999999987543322222211 1245666778899888876 55899999999977653 3333333333
Q ss_pred CCCceEEEecC
Q 001490 599 PENPRICFNKN 609 (1068)
Q Consensus 599 ~~v~~v~~s~~ 609 (1068)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 44566777764
No 172
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-16 Score=170.98 Aligned_cols=612 Identities=12% Similarity=0.118 Sum_probs=346.2
Q ss_pred cceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCC----------CCcEEEEEEeCCCc
Q 001490 373 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDKT 442 (1068)
Q Consensus 373 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d----------~~~~~l~s~~~d~~ 442 (1068)
..-.++.|+|.| +||.|+.. .|.|-|..+-+.+. .+.-|...|+.+.|.|- ...++++++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346678899877 77777644 58888988766555 67789999999999763 24557888999999
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEeeeecCCc--cEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCE
Q 001490 443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 519 (1068)
Q Consensus 443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 519 (1068)
|.+||...+..+..+..|..++..++|.+..+. ..|++.....++.+|+.++++.............++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999875543 4778888889999999999999888877777777788888 4454
Q ss_pred EEEEeeCCCCceeEEEEeCC-------CCeeeeEEecccc----------------ccCC------eEEEEEecCCCEEE
Q 001490 520 LFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQIL 570 (1068)
Q Consensus 520 l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~----------------~~~~------v~~~~~~~~~~~l~ 570 (1068)
+...+. .|.+.+-+.- .|+..+.-..|.. .... ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 444332 3334443321 1122211111110 0000 11256677766666
Q ss_pred EEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC--CEEEEEECCCeEEEEECCCCceeeec-----cc-cccc
Q 001490 571 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----GV-LSDN 642 (1068)
Q Consensus 571 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~-~~~~ 642 (1068)
.......+.++|++-..++.....+.+. +.-+.+-|++ ..|++...||.+.+|-.+........ .. ....
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q 324 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQ 324 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccc
Confidence 6677888999999999999888876553 4556666654 57999999999999987652111111 00 0111
Q ss_pred eeeeEEcCCccccccccccCeeeecCCCCCC-cccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecC
Q 001490 643 LRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG 721 (1068)
Q Consensus 643 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 721 (1068)
+.++. +....... .+...|. ...++.--.+|.+.+|.+..+........... .-+..+.|...
T Consensus 325 ~~~vr--~m~~~rp~---------~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~i-----el~~pf~f~~~ 388 (1062)
T KOG1912|consen 325 VHVVR--PMEEFRPV---------IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSI-----ELVLPFDFNLS 388 (1062)
T ss_pred eEEEe--echhcccc---------eeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccc-----cccccccccCc
Confidence 11111 11110000 0000122 33344445567788888764322211111000 00111111111
Q ss_pred -----CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001490 722 -----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 796 (1068)
Q Consensus 722 -----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 796 (1068)
...++..+.||. ...|. .+.-.++.....+...+ .......+. -.++|.|
T Consensus 389 ~~~v~k~~l~~LS~dg~-----------h~sGs-----~~~~~~p~p~~t~~~~~-----p~~n~~~~~----~pLvAvG 443 (1062)
T KOG1912|consen 389 TKLVGKTSLISLSDDGS-----------HSSGS-----TCVRMRPMPELTKVEND-----PGGNTPAGT----VPLVAVG 443 (1062)
T ss_pred eeehhhccccchhhcCC-----------CCCCc-----eeeecccCcccceeecC-----CCCCcccee----eeeEEee
Confidence 111222222220 00000 00000110000000000 000000111 1356777
Q ss_pred e-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEE---------ECCCeEEEEEcCCcee--eeeecc-ccc
Q 001490 797 S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG---------MDDSTILIYNARSSEV--ISKLEG-HSK 863 (1068)
Q Consensus 797 ~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg---------~~dg~v~iwd~~~~~~--~~~~~~-h~~ 863 (1068)
. .|+|.++|+.++.....+..|...|.++.|-. ..+++-.+ ..-+.+.+-|+.+|.. .+.+++ ...
T Consensus 444 T~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~des 522 (1062)
T KOG1912|consen 444 TNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDES 522 (1062)
T ss_pred cCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcC
Confidence 6 69999999999999999999999999999985 44333322 2224678889998853 232332 567
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEe-eCCCEEEE-------------
Q 001490 864 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH-KDQTRFLL------------- 929 (1068)
Q Consensus 864 ~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~la~------------- 929 (1068)
+|..+..|.-|+||+..-.|.-+.+||+++.. +++....... .++.+.|+ |.-.-+..
T Consensus 523 pI~~irvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWsl~~~~si~qk~ls~q~sms~n~ 594 (1062)
T KOG1912|consen 523 PIRAIRVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWSLPKHPSIKQKELSKQSSMSENL 594 (1062)
T ss_pred cceeeeecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeecccCCCCcccccchhhhhhhhce
Confidence 89999999999999999999999999998732 3333222221 37888888 43322221
Q ss_pred --EeCCeEEEEECC-------CceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec-------
Q 001490 930 --VHETHLAIYEAE-------ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL------- 993 (1068)
Q Consensus 930 --~~d~~i~vwd~~-------~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~------- 993 (1068)
.......++.+. +|.+...........+-.++| .+..|+.|..+|.+.+||+...+-.....
T Consensus 595 vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~ 672 (1062)
T KOG1912|consen 595 VVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAH 672 (1062)
T ss_pred eeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCchhh
Confidence 000112222221 111100000000111222333 45689999999999999976543222000
Q ss_pred --cccccCCCCccCcccceEEEECC-----CCCCEEEEEeCCCcEEEEeCCCCCCCCccCCCCc
Q 001490 994 --STAYLRPTTSCLHVYPHAIAAHP-----LKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus 994 --~~~~~~~~~~~~~~~~~~~~~~p-----~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
.....|.. +....+-..|-| .+.-.+..++.|++.++-|+..-+..-.++|+++
T Consensus 673 ~l~~~~ipG~---~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~~d~ 733 (1062)
T KOG1912|consen 673 SLTFPQIPGD---HTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLPNDN 733 (1062)
T ss_pred heecccCCCC---ceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceecCCCC
Confidence 00011110 111112222222 1222334458899999998877776666666643
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1e-17 Score=162.53 Aligned_cols=191 Identities=16% Similarity=0.189 Sum_probs=149.6
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEc-cCceeEEE---e----cCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC
Q 001490 780 AVPCFALSKNDAYLFSASGGVISLYIV-MTFKTILT---I----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 851 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~-~~~~~~~~---~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 851 (1068)
...+++|+|||.+|..|....|++||+ ..|..-.. + .+..+-|.+++|+|.+...+|+|+...++-||.-..
T Consensus 160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 345899999999999999999999999 44432211 1 123567899999998888999999999999999999
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE
Q 001490 852 SEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 930 (1068)
Q Consensus 852 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~ 930 (1068)
+.++..+-+|.+.|+.+.|.+||+.|.+|+. |-.|..||+..... .+-.+.+|......-......|+|++||+|
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG 315 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASG 315 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeecc
Confidence 9999999999999999999999999999876 66799999986331 222233333211223345667999999996
Q ss_pred -eCCeEEEEECCC-ceeeeeeccCCCcCEEEEEEecCCCEEEEEECC
Q 001490 931 -HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 975 (1068)
Q Consensus 931 -~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d 975 (1068)
.||.|++||+++ |..+.. ...|...+..+++.|-=..++|++..
T Consensus 316 ~tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 316 DTDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999998 665655 55678899999999987777777654
No 174
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=4.1e-18 Score=172.68 Aligned_cols=252 Identities=13% Similarity=0.208 Sum_probs=184.6
Q ss_pred CCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccc------eeeeeecCCCcceEEEEECCC-CCEEEEEeCCc
Q 001490 322 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML------FKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH 394 (1068)
Q Consensus 322 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~h~~~V~~~~~spd-g~~las~~~d~ 394 (1068)
|+ ++|.|+.|..|.|||+.=-..+. +...++..... .+.....+|+..|.+++|..+ ...||+|+.|.
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 44 78999999999999985322111 01111100000 011224579999999999986 56789999999
Q ss_pred EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCCCcEEEEeeeecC
Q 001490 395 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPHAKE 473 (1068)
Q Consensus 395 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i~~~~~~ 473 (1068)
+|++||+.+|++.. .+..|.+.|.+++|+|.... +|++|+.|++|.+.|.+..... ..+ ...+.|-.++|.+..
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHS 341 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCC
Confidence 99999999998765 66789999999999998776 8999999999999998853322 222 255778888988753
Q ss_pred CccEEEEEEcCCcEEEEeCCCC-CceEEecCCCCcEEEEEEccCCCEEE-EEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001490 474 NIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEWNESEGAIKRTYQGLQ 551 (1068)
Q Consensus 474 ~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~-~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 551 (1068)
...++++..||+|+-+|++.. ++...+..|..+|.++++++.-..++ +++ .++.|.+|++..-.... ...|.
T Consensus 342 -e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s----~d~~Vklw~~~~~~~~~-v~~~~ 415 (463)
T KOG0270|consen 342 -ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS----TDKVVKLWKFDVDSPKS-VKEHS 415 (463)
T ss_pred -ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc----ccceEEEEeecCCCCcc-ccccc
Confidence 357788899999999999987 67889999999999999998766554 444 37789999986543321 22222
Q ss_pred cccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeEE
Q 001490 552 LQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 589 (1068)
Q Consensus 552 ~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 589 (1068)
...+...|.++.|+-.++++ |+..+.++|||+.+...+
T Consensus 416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 22355778888888766554 778888999999876554
No 175
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=4.9e-18 Score=168.18 Aligned_cols=173 Identities=22% Similarity=0.373 Sum_probs=145.5
Q ss_pred cceeeecccCCCCceEEEEcC--CCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHP--VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 377 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~sp--dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 377 (1068)
..-+.++.+|..+=..++||| .|+ |++|..-+.|++|...+|.-.. ....+.+|+..|-.
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~v----------------d~~Pf~gH~~SVED 262 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKV----------------DQRPFTGHTKSVED 262 (440)
T ss_pred cCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceee----------------cCccccccccchhh
Confidence 345677889999999999999 554 5888888999999998875332 12226789999999
Q ss_pred EEECCC-CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC---CCce
Q 001490 378 VVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSR 453 (1068)
Q Consensus 378 ~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~ 453 (1068)
++|||. ...||+|+.||+|+|||+..+...... ..+.|...|+-+.|+.+-. +|++|+.||+++|||++ .+++
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCc
Confidence 999996 567899999999999999998543333 3478999999999998887 89999999999999987 4678
Q ss_pred eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCC
Q 001490 454 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 494 (1068)
Q Consensus 454 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~ 494 (1068)
+..|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 340 VA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 340 VATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 899999999999999998755 5888899999999999854
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=5.4e-19 Score=191.47 Aligned_cols=286 Identities=19% Similarity=0.284 Sum_probs=220.5
Q ss_pred eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC
Q 001490 302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 381 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s 381 (1068)
.++.|.||...|.|+.|...|. ++++|+.|..|+||..+++.++.. +.||++.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence 3556789999999999999997 679999999999999999999976 88999999999999
Q ss_pred CCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE---ec
Q 001490 382 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FE 458 (1068)
Q Consensus 382 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~ 458 (1068)
.+..++|+++.|..|++|.+.++..+. .+.+|++.|++++|+|-. +.+.||++++||..-.-.+.. ++
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCC
Confidence 999999999999999999999998776 678999999999999943 678899999999761111111 11
Q ss_pred c-CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCC-EEEEEeeCCCCceeEEEE
Q 001490 459 G-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEW 536 (1068)
Q Consensus 459 ~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i~~w 536 (1068)
. ...-+.++.| .+++..+++++.|+.-..|.+..... +...+.-+.++.|.. +.++.- .+..+.+|
T Consensus 313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vw 380 (1113)
T KOG0644|consen 313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVW 380 (1113)
T ss_pred cccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeee
Confidence 1 1233444444 34667889999999888886542111 111112222222322 222222 26678999
Q ss_pred eCCCCeeeeEEeccccccCCeEEEEEecCCCEEE-EEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEE
Q 001490 537 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 615 (1068)
Q Consensus 537 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 615 (1068)
++.+|.....+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||+||..++.
T Consensus 381 nl~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred ecccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEec
Confidence 999999999999988 8999999999877665 5899999999999999988777632 2 34677899999999999
Q ss_pred EECCCeEEEEECCCCcee
Q 001490 616 IANENRIKILETPESNSV 633 (1068)
Q Consensus 616 ~~~dg~i~iwd~~~~~~~ 633 (1068)
..+-|.+.|.....+...
T Consensus 456 sd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 456 SDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCCceEEeccCCCccc
Confidence 999999999887765443
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=2.2e-16 Score=163.20 Aligned_cols=500 Identities=12% Similarity=0.164 Sum_probs=288.2
Q ss_pred cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE--CCCCC
Q 001490 308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS 385 (1068)
Q Consensus 308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~--spdg~ 385 (1068)
.|.+.|.|+.|+.+.. ++.+++++-.+.-||+.+.+... .... ...++.. .| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~dDh~~~~~~~~~~~s~~~-~~~p-------~df~pt~---~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSDDHQIFKWSDVSRDSVEV-AKLP-------DDFVPTD---MH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEeccCceEEEeecccchhhhh-hhCC-------cccCCcc---cc---ccccccCCCCCcc
Confidence 5677888999999887 55555544444444544332211 0100 0000000 01 000000 01235
Q ss_pred EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001490 386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 465 (1068)
Q Consensus 386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 465 (1068)
.|+.++.||.+.+-+-... ....+..|.+.|.+-.|+|||. -|++.|.||.|++|. ++|-...++.....+|+
T Consensus 77 ~~~i~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 6888889998888775432 2225678999999999999999 799999999999999 77877677777888999
Q ss_pred EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001490 466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 545 (1068)
Q Consensus 466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 545 (1068)
|++|.|+.+ ..+++.+ +.+.+=.+........++.|.+-|.++.|++..+.+++++. |....+||. .|..+.
T Consensus 150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~-~G~~Lf 221 (737)
T KOG1524|consen 150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDA-QGANLF 221 (737)
T ss_pred EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeecc-cCcccc
Confidence 999988644 3444433 45555556667778888999999999999999999999985 778999996 455555
Q ss_pred EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001490 546 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 625 (1068)
Q Consensus 546 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 625 (1068)
.-..|. .+|++++|+|+ +.++.++. ++++ +.. .....|..++||+||..+++|+..|.+.+=
T Consensus 222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 555555 89999999999 45555543 3344 211 123458899999999999999999887653
Q ss_pred ECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecC
Q 001490 626 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 705 (1068)
Q Consensus 626 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 705 (1068)
..-+.+... +..-++......|.+-|+... .+..+.+|
T Consensus 284 ~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~~---v~d~LE~p 321 (737)
T KOG1524|consen 284 YAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVATG---VQDILEFP 321 (737)
T ss_pred eeehhhhhh---------------------------------------ccceeEeeccceEEeehhhhh---HHHHhhCc
Confidence 322221110 111112222233333333211 11222222
Q ss_pred CccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEE
Q 001490 706 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 785 (1068)
Q Consensus 706 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 785 (1068)
.++..... .-..|+++... .+++|.-. -|+.. ..++. ....+.-+.
T Consensus 322 -----~rv~k~sL--~Y~hLvvaTs~-qvyiys~k-----------------nwntp-----iiidg----re~tr~lie 367 (737)
T KOG1524|consen 322 -----QRVVKFSL--GYGHLVVATSL-QVYIYSEK-----------------NWNTP-----IIIDG----REDTRNLIE 367 (737)
T ss_pred -----cceeeeee--ceeEEEEEecc-EEEEEecC-----------------CccCc-----EEEec----cccchhHhh
Confidence 23433332 22234444333 45555321 11111 00000 000000000
Q ss_pred EecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCC---eEEEEEeCCCCCEEEEEE--CCCeEEEEEc-CCceeee--e
Q 001490 786 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT---ATSLAFNPHDNNVIAIGM--DDSTILIYNA-RSSEVIS--K 857 (1068)
Q Consensus 786 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~---i~~l~~s~~d~~~lasg~--~dg~v~iwd~-~~~~~~~--~ 857 (1068)
...+++......++.+|..+ |+.....+.+... .+.=.+|- ....|+.-. ....+.+||. .+|+... .
T Consensus 368 --q~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsL-andtLaird~ad~kvlhlFd~istgk~qgDgk 443 (737)
T KOG1524|consen 368 --QGEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSL-ANDTLAIRDNADPKVLHLFDLISTGKRQGDGK 443 (737)
T ss_pred --hhhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeec-ccceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence 01123333334557777665 3332222212111 11112222 233455432 3346788998 7776542 2
Q ss_pred ecccccCeEEEEEc----CCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCC
Q 001490 858 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 933 (1068)
Q Consensus 858 ~~~h~~~V~~l~~s----pdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~ 933 (1068)
+-.|...|..++.. ++.+.++.-...+.+.|=.+++-.. .+........|..++|+..-+.|+--.|+
T Consensus 444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgk--------ee~I~KiGTmVhtLawndttNiLcglqDt 515 (737)
T KOG1524|consen 444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGK--------EEEIYKIGTMVHTLAWNDTTNILCGLQDT 515 (737)
T ss_pred ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCc--------hhhhhhhhhhhhhhhhccccceeeeeccc
Confidence 22366667666664 3557788888888888877765221 11112222358899999999988888999
Q ss_pred eEEEEECCCc
Q 001490 934 HLAIYEAEEL 943 (1068)
Q Consensus 934 ~i~vwd~~~~ 943 (1068)
.+.||=..+-
T Consensus 516 ~fsVWy~pn~ 525 (737)
T KOG1524|consen 516 CFSVWYYPNE 525 (737)
T ss_pred eEEEEEcCCc
Confidence 9999987643
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=3.7e-18 Score=178.32 Aligned_cols=261 Identities=15% Similarity=0.199 Sum_probs=197.5
Q ss_pred eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEcc-----CCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC
Q 001490 367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 441 (1068)
Q Consensus 367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 441 (1068)
.+..|.+.|++++|.|-..-|++++.||++.+|+++ ....+.+..++.+|.++|.|++..++++ .+++||.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 2334667779999999999999999999 899999999
Q ss_pred cEEEEECCCC----------ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC--CCcEE
Q 001490 442 TIKVWDAVTG----------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCT 509 (1068)
Q Consensus 442 ~i~iwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~ 509 (1068)
+|+.|++... .....+.||.+.|+.++++..++ .|++++.||+++.|+...... ..+... .+-..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999965411 22357789999999999988654 799999999999998766555 222222 22234
Q ss_pred EEEEccCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----ccCCeEEEEEecCCCEEEEEECCCeEEEEEcC
Q 001490 510 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 584 (1068)
Q Consensus 510 ~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 584 (1068)
++.+.... ...++... .+.-.+.+...+..+..+..... ....+..+.++|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 12222111 12233444444444444432221 12457788999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccc
Q 001490 585 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 638 (1068)
Q Consensus 585 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1068)
++.++.....+ ...+.++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 99999888766 45689999999999999999999999999987766655443
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4e-18 Score=174.41 Aligned_cols=302 Identities=16% Similarity=0.226 Sum_probs=234.2
Q ss_pred ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
.+...|..|.+.|..|-|...|. +|++|+.|..|.+||+.++..... ...||...|..-.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhc
Confidence 45567889999999999999997 789999999999999999887643 15578888888888
Q ss_pred CC--CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe-
Q 001490 381 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 457 (1068)
Q Consensus 381 sp--dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 457 (1068)
-| +.+.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -+.+++.|+.+.-.|+.++.....+
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 4678999999999999877554444434467789999999999999887 7999999999999999887654333
Q ss_pred --ccCCC---cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce------EE------ecCCCCcEEEEEEccCCCEE
Q 001490 458 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VD------YDAPGLGCTRMAYSANGRRL 520 (1068)
Q Consensus 458 --~~h~~---~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~~------~~~~~~~i~~~~~s~d~~~l 520 (1068)
..+.. ...+++..|. +...+++++.|..+++||.+..... .. .....-.|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 22333 4567777765 3458999999999999997653322 11 11223379999999877766
Q ss_pred EEEeeCCCCceeEEEEeCCCCe------------ee-eEEeccccccCCeEEEE-EecCCCEEEEEECCCeEEEEEcCCC
Q 001490 521 FSCGTSKEGESFLVEWNESEGA------------IK-RTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 586 (1068)
Q Consensus 521 ~~~~~~~~~~~~i~~wd~~~~~------------~~-~~~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~ 586 (1068)
++... +-.|+++....+. .+ +.++||... ..|..+- |.|..+++++|+.-|.|.||+..++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 66554 4458888544321 22 337888733 2366665 4788999999999999999999999
Q ss_pred eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 587 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 587 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
+.+..+.+..+ -|+|+.-+|--..||+.+-|..|+||.-.+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99999987766 4899999999999999999999999987544
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.5e-18 Score=193.52 Aligned_cols=251 Identities=14% Similarity=0.160 Sum_probs=196.8
Q ss_pred CceEEEEcCCCCe---EEEEEcCcCcEEEEecCCC---cceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC
Q 001490 312 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 385 (1068)
Q Consensus 312 ~V~~v~~spdg~~---lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~ 385 (1068)
.-..++|.+.|.. ++|.|..||.|.+||...- ..... ......|.+.|..+.|++...
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence 5678999988876 6899999999999998652 11110 011556999999999999765
Q ss_pred -EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC--
Q 001490 386 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 462 (1068)
Q Consensus 386 -~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-- 462 (1068)
.||+|+.||.|.|||+..-+...... -....+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.+
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998744322110 1124568999999988776 899999999999999999988877766554
Q ss_pred cEEEEeeeecCCccEEEEEEcCC--cEEEEeCCCCCc-eEEecCCCCcEEEEEEccCC-CEEEEEeeCCCCceeEEEEeC
Q 001490 463 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 463 ~v~~i~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
.+..+.|+|+...+++++..+|+ .|.+||++.... ...+..|...|.++.|++.+ .+|++++. |+.|.+|+.
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~ 283 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP 283 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence 46788999875544444444443 599999987654 45667899999999999966 78888775 667999999
Q ss_pred CCCeeeeEEeccccccCCeEEEEEecCCC-EEEEEECCCeEEEEEcCCCe
Q 001490 539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 587 (1068)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 587 (1068)
++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+....
T Consensus 284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999988755 8899999999877 66668999999999987654
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=3.7e-17 Score=162.90 Aligned_cols=237 Identities=15% Similarity=0.181 Sum_probs=178.0
Q ss_pred cccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-C
Q 001490 306 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 384 (1068)
Q Consensus 306 l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g 384 (1068)
..||+++|..++|.|-....+|+||.|.+|.||++..+...+... .+...|.||...|.-++|+|. .
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTAP 144 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccch
Confidence 479999999999999888899999999999999998766554311 223348899999999999996 4
Q ss_pred CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490 385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464 (1068)
Q Consensus 385 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 464 (1068)
..|++++.|.+|.+||+.+|+.+. .+. |.+.|.++.|+.||. ++++.+.|+.|+|||..+|+.+..-.+|.+.-
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred hhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 568889999999999999998655 454 999999999999999 89999999999999999999998888887643
Q ss_pred EE-EeeeecCCccEEEEEE---cCCcEEEEeCCCCCceEEec--CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490 465 YS-LCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 465 ~~-i~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
.. +.| -.+|.++.+|. .+..+-+||..+.+....+. .....|.---|.+|.+.+..++. ||+.|+.|.+
T Consensus 219 ~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK---GD~~IRYyEi 293 (472)
T KOG0303|consen 219 PARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK---GDSSIRYFEI 293 (472)
T ss_pred cceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec---CCcceEEEEe
Confidence 22 223 23666444442 46789999988766544322 23446666678899999988873 6889999998
Q ss_pred CCCeeeeEEeccccccCCeEEEEEecC
Q 001490 539 SEGAIKRTYQGLQLQHNSVSVVHFDTA 565 (1068)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~ 565 (1068)
....+.-.+-..-....+-..+.|.|.
T Consensus 294 t~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCCceeEEecccccCCcccccccccc
Confidence 766532222111111234456666664
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8e-17 Score=159.70 Aligned_cols=301 Identities=12% Similarity=0.118 Sum_probs=214.8
Q ss_pred eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceee-eeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
+.+.+.+|.+-|.++.||.+|+ +||+|+.|..+++|++..--..++ .++.+ .-..|...|.|++|
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEF 113 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEE
Confidence 4456789999999999999997 789999999999999864322211 11110 12346689999999
Q ss_pred CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc-e--eeEe
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSF 457 (1068)
Q Consensus 381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~--~~~~ 457 (1068)
....++|.+|..+++|++-|+++.+.+... .-....+.|..+..+|... .+++.+.++.|.+||..... . +..+
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeee
Confidence 999999999999999999999998765422 1112334899999999987 89999999999999987654 2 2223
Q ss_pred ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE-------ecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490 458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
........++-|+|. ...+|++.+..+-+-+||.+....... +........++.|+|+|..+++.-. .
T Consensus 191 AN~~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~ 265 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----G 265 (609)
T ss_pred cCCCccceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----c
Confidence 334455677778775 346889999999999999876543221 1111223467889999999987654 2
Q ss_pred eeEEEEeCCCCee-eeEEecccc----ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC-------------------
Q 001490 531 SFLVEWNESEGAI-KRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV------------------- 586 (1068)
Q Consensus 531 ~~i~~wd~~~~~~-~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~------------------- 586 (1068)
..-.+||+-+.++ +.++. |.. ....+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 266 ~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred CCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 2345677766443 22222 221 12346778887664 4899999999999987521
Q ss_pred ----eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490 587 ----QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 628 (1068)
Q Consensus 587 ----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 628 (1068)
+.+..+.+| ...++.|.|+|...+|++.+-.+.++||.-.
T Consensus 344 ~~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 344 IFIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred heecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 122344544 3457899999999999999999999999755
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=155.38 Aligned_cols=293 Identities=17% Similarity=0.193 Sum_probs=199.2
Q ss_pred ccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeec-CCCcceEE
Q 001490 299 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 377 (1068)
Q Consensus 299 p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~ 377 (1068)
|..-...|++|...|+++.|-.+++ |.+|..-|.|++|++.+.+.+.. ++ .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 3445566789999999999999996 58899999999999998776643 33 46778999
Q ss_pred EEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCC-----CCcE--EEEEEeCCC-cEEEEECC
Q 001490 378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-----CKQI--SVITCGDDK-TIKVWDAV 449 (1068)
Q Consensus 378 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----~~~~--~l~s~~~d~-~i~iwd~~ 449 (1068)
+.--|+ ..|.+-+.|+.+.+|++..+.-+ ..|.-.++++.|.+- ++.. .++.-+... .+.+-|..
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence 999988 56677789999999999876433 245555666666542 2110 111111000 01112211
Q ss_pred CCceeeEe----ccCCCcEEEEeeeec-CCccEEEEEEcCCcEEEEeCCCCCce----------EEecCCCCcEEEEEEc
Q 001490 450 TGSRTYSF----EGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGAR----------VDYDAPGLGCTRMAYS 514 (1068)
Q Consensus 450 ~~~~~~~~----~~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~----------~~~~~~~~~i~~~~~s 514 (1068)
....+... .+..+.+.+..+... ..--++++|-++|.+.+||+.++... .....+..++.++.+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya 214 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA 214 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence 11111111 122344555443222 12235677889999999999987433 3345566788899988
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCC--Cee-eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q 001490 515 ANGRRLFSCGTSKEGESFLVEWNESE--GAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591 (1068)
Q Consensus 515 ~d~~~l~~~~~~~~~~~~i~~wd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 591 (1068)
+.-..=++++. +..+..|.++. +.+ ++... ...+..+..+.+-||++.+++++.|+.||||+.++.+++..
T Consensus 215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~--~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEI--TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred hhhcCCcCCCc----cccceeeeeccccCcccccceE--EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 75555455544 33477777653 222 11111 11235688899999999999999999999999999999999
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490 592 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 627 (1068)
Q Consensus 592 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 627 (1068)
+..|. ..|++++|+|+..++|.++.|++|.+|++
T Consensus 289 LkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99886 46999999999999999999999999986
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=4.7e-18 Score=184.34 Aligned_cols=288 Identities=14% Similarity=0.228 Sum_probs=227.0
Q ss_pred eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001490 542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 621 (1068)
Q Consensus 542 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 621 (1068)
+.++.+.+|. ..|+|+.|...|.++++|++|..++||.++++.++....+|.. .+..++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 3455677777 8999999999999999999999999999999999999987754 5999999999999999999999
Q ss_pred EEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccce
Q 001490 622 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 701 (1068)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 701 (1068)
|++|.+.++.++..+++|.+.|++++|+|.. +.+.||++++||.....- ..
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------------sss~dgt~~~wd~r~~~~---~y 306 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------------SSSDDGTCRIWDARLEPR---IY 306 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc--------------------------cCCCCCceEecccccccc---cc
Confidence 9999999999999999999999999998742 566789999999762110 00
Q ss_pred eecCC-ccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCC
Q 001490 702 LLLPS-KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 780 (1068)
Q Consensus 702 ~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1068)
...|. ......+.++.|...+..+++++.++.-..|.+..- .| +...
T Consensus 307 ~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-----------------~~~~ 354 (1113)
T KOG0644|consen 307 VPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-----------------RSNL 354 (1113)
T ss_pred CCCCCCcccccceeeeeccccccccccccCCcccccchhhHh---------------hh-----------------hccc
Confidence 00111 113355677888889999999999988887765421 11 1111
Q ss_pred eeEEEEecCC-CEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee
Q 001490 781 VPCFALSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 858 (1068)
Q Consensus 781 v~~l~~s~dg-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~ 858 (1068)
+.-+.++.|- .+.+++. +-.+++|++.+|...+.+.+|...+..+.++|.+.++..+++.||...|||+..|.+++..
T Consensus 355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence 2222222222 3444443 6779999999999999999999999999999988888889999999999999999877665
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001490 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 895 (1068)
Q Consensus 859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 895 (1068)
....+.+..-+||+||+.++....-|.++|.....++
T Consensus 435 ~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 435 FIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 4334557778999999999998888999998776544
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.3e-15 Score=140.33 Aligned_cols=286 Identities=13% Similarity=0.151 Sum_probs=196.0
Q ss_pred cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490 712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 791 (1068)
Q Consensus 712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 791 (1068)
.|.+-+++|.+++++++..+|.|.+..+..-... .+ .+.....+ .+..+|+.++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~---sa---------~~~gk~~i----v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG---SA---------EPPGKLKI----VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc---cc---------CCCCCcce----eeccccCCCeeeeeee--hh
Confidence 3455678999999999999999999987642210 00 00111111 1223699999999998 56
Q ss_pred EEEEEeCCeEEEEEccCcee------EEEec-------CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee
Q 001490 792 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 858 (1068)
Q Consensus 792 ~l~~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~ 858 (1068)
+|.+++||.|+-|....... +.... ..-..|+++-+.|..+.++.+| .|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEE
Confidence 78888899999998753221 11111 1234789999999555555544 8999999999999999999
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCccc----CCCCceEEEEeeCCCEEEEEeCCe
Q 001490 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLVHETH 934 (1068)
Q Consensus 859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~spdg~~la~~~d~~ 934 (1068)
+||++.|.+++--.....+++|++||++++||.++++.... +...+.... ...+| .+..-+..+|++|....
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 99999999999855666789999999999999999774442 222111111 11233 44556778999998889
Q ss_pred EEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEE
Q 001490 935 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1014 (1068)
Q Consensus 935 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1068)
+.+|.+++.++...+.. ..++..+.|-.| .+++++..++|.-|.+. |.+.+... -. ....++.....
T Consensus 229 lslwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~ 295 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT 295 (325)
T ss_pred eeEEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence 99999999988876543 567888888654 57778888899999876 44443333 11 11123333444
Q ss_pred CCCCCCEEEEEeCCCcEEEEe
Q 001490 1015 HPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus 1015 ~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
+| -+.+-.++-...+.++.
T Consensus 296 ~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 296 SP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred Cc--eEEEEecccceeeeeee
Confidence 55 46666777777777653
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=1.8e-16 Score=151.51 Aligned_cols=260 Identities=17% Similarity=0.219 Sum_probs=187.1
Q ss_pred eecccCCCCceEEEEcCCCCeEEEEEcCc-------CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 376 (1068)
Q Consensus 304 ~~l~~h~~~V~~v~~spdg~~lla~gs~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 376 (1068)
.+|..|.++|+.++-+|-.+++|++...+ -.+.||.+....... +...|+. ...+-..+-+.|.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE~-------v~~Ldteavg~i~ 127 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLEC-------VASLDTEAVGKIN 127 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhhH-------hhcCCHHHhCcee
Confidence 45577889999999999999999988763 237888875432110 0000100 0001124556999
Q ss_pred EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEE---EccccccEEEEEEcC--CCCcEEEEEEeCCCcEEEEECCCC
Q 001490 377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG 451 (1068)
Q Consensus 377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~---~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~ 451 (1068)
|+.|.|++..||+-. |..|.+|+++.+..+..... -.+|....++-+|+| ||. .+++.+ |+++..||+++.
T Consensus 128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccch
Confidence 999999999999875 77899999988765321111 123566788999998 566 566554 899999999988
Q ss_pred ceeeEe-ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC-ceEEecCCCCcEEEEEEccCCC-EEEEEeeCCC
Q 001490 452 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKE 528 (1068)
Q Consensus 452 ~~~~~~-~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~ 528 (1068)
++...+ ..|...|..+.|.|+. ..+|++++.||.|++||.+..+ .+..+..|.+.+.++.|+|.-. ++++++.
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S--- 279 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS--- 279 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence 877666 4688999999998863 3689999999999999998755 4668889999999999999655 4455543
Q ss_pred CceeEEEEeCCCCe-----------------------------eeeEEeccccccCCeEEEEEecCCCEEEE-EECCCeE
Q 001490 529 GESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVI 578 (1068)
Q Consensus 529 ~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i 578 (1068)
|..|.+|...+-. .+.++..|. +.|++++|+.-..++++ -+.||.+
T Consensus 280 -Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 280 -DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred -CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceE
Confidence 5568887543211 123455555 89999999988887765 7899998
Q ss_pred EEEEcC
Q 001490 579 KIWDMN 584 (1068)
Q Consensus 579 ~iwd~~ 584 (1068)
.|=.+.
T Consensus 356 iIs~V~ 361 (370)
T KOG1007|consen 356 IISSVP 361 (370)
T ss_pred EeecCC
Confidence 886654
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-15 Score=140.95 Aligned_cols=278 Identities=17% Similarity=0.213 Sum_probs=193.8
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCC---cceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEE
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 388 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~la 388 (1068)
.|..-++||.++ +++.|..+|+|.+..+++- +.... ...+.....+|.++|+.++|. ..+|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~------------gk~~iv~eqahdgpiy~~~f~--d~~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPP------------GKLKIVPEQAHDGPIYYLAFH--DDFLL 76 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCC------------CCcceeeccccCCCeeeeeee--hhhee
Confidence 567778999998 6799999999999998642 11100 111112246899999999999 45677
Q ss_pred EEeCCcEEEEEEccCCCc---ccceEE--Ecccc-----ccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001490 389 VAYSKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 458 (1068)
Q Consensus 389 s~~~d~~i~vwd~~~~~~---~~~~~~--~~~h~-----~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 458 (1068)
+| .||.|+=|.+..-.. .+...+ ..-|. -.|+++...|... -++.++.|+.++.||+++|+..++++
T Consensus 77 s~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 77 SG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ec-cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence 76 469999998864322 111111 11222 3688999998877 45555679999999999999999999
Q ss_pred cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC----------cEEEEEEccCCCEEEEEeeCCC
Q 001490 459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKE 528 (1068)
Q Consensus 459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~i~~~~~s~d~~~l~~~~~~~~ 528 (1068)
||++.|.++.-.. ....+++|++||++|+||.++.+....+..... .|. +..-+..++++|+.
T Consensus 154 GHtDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGgG--- 226 (325)
T KOG0649|consen 154 GHTDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGGG--- 226 (325)
T ss_pred CCcceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecCC---
Confidence 9999999997632 234799999999999999999988776543322 343 44466778988863
Q ss_pred CceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490 529 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 608 (1068)
Q Consensus 529 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 608 (1068)
..+.+|+++..++...|.-. ..+..+.|.. +.++++++.+.+.-|.+. |.+....+...+ ...+..++.
T Consensus 227 --p~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~ 295 (325)
T KOG0649|consen 227 --PKLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQT 295 (325)
T ss_pred --CceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccC
Confidence 34999999999988888764 4778888864 578888888899999874 555555544332 244444443
Q ss_pred CC-CEEEEEECCCeEEEE
Q 001490 609 NG-TLLAVIANENRIKIL 625 (1068)
Q Consensus 609 ~~-~~l~~~~~dg~i~iw 625 (1068)
.. +++-.++..+.+.|+
T Consensus 296 ~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 296 SPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CceEEEEecccceeeeee
Confidence 32 344445555566554
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=4.3e-15 Score=163.22 Aligned_cols=252 Identities=11% Similarity=0.104 Sum_probs=165.3
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEcc-Ccee--EEEecCCCCCeEEEEEeCCCCCEEEEEE-CCCeEEEEEcCC-
Q 001490 779 EAVPCFALSKNDAYLFSAS--GGVISLYIVM-TFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS- 851 (1068)
Q Consensus 779 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~-~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~- 851 (1068)
.....++++||+++|+++. ++.|.+|++. +++. +.... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence 4566889999999998775 5889999986 3432 22222 234567899999 788777766 488999999974
Q ss_pred ce---eeeeecccccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeee---eeeecCCCcccCCCCceEEEEeeCC
Q 001490 852 SE---VISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQFHKDQ 924 (1068)
Q Consensus 852 ~~---~~~~~~~h~~~V~~l~~spdg~~l~s~-s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~spdg 924 (1068)
+. .+..+.+ ......++++|+|++++++ ..++.|.+||+.+...... .......+ .....++|+|||
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence 32 2333332 2346778999999988654 4568999999986321110 11111112 235689999999
Q ss_pred CEEEEE--eCCeEEEEECCC--ce--eeeeec--cC---CCcCEEEEEEecCCCEEEEEEC-CCcEEEEEcCCCcEEEEe
Q 001490 925 TRFLLV--HETHLAIYEAEE--LT--CLKQWF--PI---SSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRI 992 (1068)
Q Consensus 925 ~~la~~--~d~~i~vwd~~~--~~--~~~~~~--~~---h~~~v~~l~fs~dg~~l~t~~~-dg~v~vwd~~~~~~~~~~ 992 (1068)
++++++ .+++|.+|+++. ++ .+..+. .. +......+.|+|||++|+++.. ++.|.+|++........+
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 999874 378999999973 32 222211 11 1223346889999999998854 689999999654321111
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeC-CCcEEEEeCCCCCCCCccC
Q 001490 993 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDTWAVL 1046 (1068)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~ 1046 (1068)
.... +.+ ..+..++++| |+++|+++.. +++|.+|++..+...+...
T Consensus 267 ~~~~--~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 267 EGHQ--PTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred eEEE--ecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 1111 111 2344689999 6777777665 8999999997665444443
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=2.7e-15 Score=149.09 Aligned_cols=241 Identities=11% Similarity=0.171 Sum_probs=185.3
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC--eEEEEEcCCceee
Q 001490 778 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 855 (1068)
Q Consensus 778 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 855 (1068)
...+..+.|..|...|..|+....++|..+..............|..+-||. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677788899999999877788888876554333333445677788876 4777666543 6999999988877
Q ss_pred eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-E--eC
Q 001490 856 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 932 (1068)
Q Consensus 856 ~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~--~d 932 (1068)
..+. ...+|.+|.+. .++|+++=.+. |+|||+++.+ .+.+..........+.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 55679999996 45666655555 9999999854 44444433222234666777777789998 2 56
Q ss_pred CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCcEEEEeccccccCCCCccCcccceE
Q 001490 933 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1011 (1068)
Q Consensus 933 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1068)
|.|.|||+.+.+.+.. ...|.+.+.+++|++||.+|||++..|+ |||+.+.+|+.+.+|+.+.+ + +....
T Consensus 153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEEE
Confidence 8899999999988887 4589999999999999999999999987 89999999999999996554 2 33457
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001490 1012 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus 1012 ~~~~p~~~~~l~~~~~dg~i~~w~~~~~~ 1040 (1068)
++|+| |+++|++.+..++|++|++....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999 78999999999999999997654
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=156.85 Aligned_cols=292 Identities=13% Similarity=0.165 Sum_probs=203.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec--CCC-CcEE
Q 001490 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT 509 (1068)
Q Consensus 433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~-~~i~ 509 (1068)
.++++-..|.|++||..+|+.+..++++...++.+.|........+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6788888999999999999999999999999999999875566789999999999999999877655443 333 3566
Q ss_pred EEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee-eeEEe-ccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCC
Q 001490 510 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 586 (1068)
Q Consensus 510 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~ 586 (1068)
+++..-.++.++++..-...+..|.+||++..+. ++.+. .|. ..|+++.|+|.. +.|++||.||-|.+||+...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7776667888888876555678899999998766 55543 344 899999999974 67888999999999999754
Q ss_pred e----EEEEEeCCCCCCCCceEEEecCC-CEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccccccccc
Q 001490 587 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 661 (1068)
Q Consensus 587 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 661 (1068)
. ++.++.. ...|..+.|..++ +.+.+-+...+..+|+++.+.....+....-.. ... -.-.+
T Consensus 199 ~EeDaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~--~d~--------r~~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA--DDL--------RKEDN 265 (376)
T ss_pred cchhhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh--hhH--------Hhhhh
Confidence 2 2233322 2447889998876 458888889999999999886443333211000 000 00000
Q ss_pred CeeeecCCCCCCcccceeecc-cccceeecccccC-CcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEec
Q 001490 662 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFAR-PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 739 (1068)
Q Consensus 662 ~~~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 739 (1068)
....++.....+....+.++. -++..++-+.... ............+|..-|+++.|...+..+.+|+.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 011112221233444444444 4555555544211 22222333344557778899999999999999999999999985
Q ss_pred c
Q 001490 740 P 740 (1068)
Q Consensus 740 ~ 740 (1068)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.2e-14 Score=144.67 Aligned_cols=240 Identities=12% Similarity=0.132 Sum_probs=187.4
Q ss_pred CcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCC--CcEEEEECC
Q 001490 372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAV 449 (1068)
Q Consensus 372 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~ 449 (1068)
...+..+.|..|...|..|+.|| -++|..+.-.... ........|.-+-|+.. ++|..+.+ +.+++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 34677788999999999999999 6888877644311 11122335666677654 34443333 459999999
Q ss_pred CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC---CCcEEEEEEccCCCEEEEEeeC
Q 001490 450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~d~~~l~~~~~~ 526 (1068)
.+..+..+. ...+|.++.+.. +.|+++-.+. |.|||+++.+.+.++... ...+.++++++.+.+++.-+.-
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence 988888775 567788888743 4676666555 999999999988876554 3356666677777788875432
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCe-EEEEEcCCCeEEEEEeCCCCCCCCceEE
Q 001490 527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRIC 605 (1068)
Q Consensus 527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 605 (1068)
. .|.|++||..+-+.+..+..|. +.+.+++|+++|.+|+++|+.|+ |||+.+.+|+.+..+.-......|.+++
T Consensus 151 t--~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 151 T--SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred C--CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE
Confidence 2 5569999999999999999888 99999999999999999999997 6899999999999998665556788999
Q ss_pred EecCCCEEEEEECCCeEEEEECCCC
Q 001490 606 FNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 606 ~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
|+|++.+|++.++.++|++|.++..
T Consensus 226 Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999999998854
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.5e-16 Score=163.29 Aligned_cols=248 Identities=17% Similarity=0.163 Sum_probs=165.7
Q ss_pred EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEE
Q 001490 412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490 (1068)
Q Consensus 412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vw 490 (1068)
++.||++.|.|++|+.||. +|++|++|-.+.|||.-..+.++.+ +||.+.|.++.|.|..+...+++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6789999999999999999 9999999999999999988888777 789999999999999888999999999999999
Q ss_pred eCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC-CEE
Q 001490 491 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQI 569 (1068)
Q Consensus 491 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 569 (1068)
|+...+.... |-...+....+..|. ..|..++-.|++ +.+
T Consensus 123 dl~~~~~~~~------------------------------------d~~~~~~~~~~~cht---~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 123 DLDSSKEGGM------------------------------------DHGMEETTRCWSCHT---DRVKRIATAPNGPHTF 163 (758)
T ss_pred eccccccccc------------------------------------ccCccchhhhhhhhh---hhhhheecCCCCCceE
Confidence 9875322100 000111223344555 678888888888 778
Q ss_pred EEEECCCeEEEEEcCCCeEEE--------EEeCCCCCCCCceEEEec-CCCEEEEEECCCeEEEEECCCC-ceeeecc--
Q 001490 570 LAAGDDHVIKIWDMNKVQLLT--------TIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG-- 637 (1068)
Q Consensus 570 ~~~s~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-- 637 (1068)
.++++||+|+-+|++....-. ........-...++..+| +..+|++|+.|--.++||.... +....-.
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~ 243 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM 243 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc
Confidence 889999999999998632110 001111122356888999 5678999999999999995321 1111100
Q ss_pred --ccccceeeeE-EcCCccccccccc------cCeeeecCCCCCCcccceeecccccceeecccccCCcccceeec
Q 001490 638 --VLSDNLRKLS-VNPISTVTGAGIA------NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 704 (1068)
Q Consensus 638 --~~~~~i~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 704 (1068)
.......|+. |+|.......+.. ...+.| +|+|.-++..-....|.++|+...+.........
T Consensus 244 ~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~~ 315 (758)
T KOG1310|consen 244 NTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLPI 315 (758)
T ss_pred cCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeecCcc
Confidence 0111112222 2222221111100 112344 6788777777777788999987665554444433
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=153.77 Aligned_cols=277 Identities=15% Similarity=0.165 Sum_probs=193.3
Q ss_pred eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC--CCCEEEEEeCCcEEEEEEc
Q 001490 324 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAY 401 (1068)
Q Consensus 324 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--dg~~las~~~d~~i~vwd~ 401 (1068)
..+|++-..|+|++||..+|+.+.. +.+|...+..++|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 3568888889999999999988876 667888888888877 4678999999999999999
Q ss_pred cCCCcccceEEEcccc-ccEEEEEEcCCCCcEEEEEEe----CCCcEEEEECCCCce-eeEe-ccCCCcEEEEeeeecCC
Q 001490 402 HGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKEN 474 (1068)
Q Consensus 402 ~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~i~~~~~~~ 474 (1068)
.+....... .+..+. .+..+++..-.++ ++++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+ +
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~ 177 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-D 177 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-C
Confidence 987654433 445565 4667777665666 676664 466799999998766 4443 679999999999997 5
Q ss_pred ccEEEEEEcCCcEEEEeCCCCCc---eEEecCCCCcEEEEEEccCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001490 475 IHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 550 (1068)
Q Consensus 475 ~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 550 (1068)
..+|++||.||.|.++|+..... +.....+...|.++.|..++ +.+.+.+. .....+|+++.+.....+...
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENP 253 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCc
Confidence 57999999999999999876533 22334456679999999888 33444443 345899999988765444432
Q ss_pred ccc---------cCCeEEEEEecCCCEEEE-EECCCeEEEEEcC---CCe---EEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490 551 QLQ---------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQ---LLTTIDAGGGLPENPRICFNKNGTLLA 614 (1068)
Q Consensus 551 ~~~---------~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~ 614 (1068)
... ...+.......++...+. |+.-|+..++-+. ++. .+..+.++ +...|+++.|...+..+.
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLY 332 (376)
T ss_pred cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceee
Confidence 100 011111111223344444 3335666665443 333 33333332 334578889998999999
Q ss_pred EEECCCeEEEEECC
Q 001490 615 VIANENRIKILETP 628 (1068)
Q Consensus 615 ~~~~dg~i~iwd~~ 628 (1068)
+|+.||.+.+|..+
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999964
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=151.15 Aligned_cols=287 Identities=15% Similarity=0.129 Sum_probs=197.9
Q ss_pred eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEc-cccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490 367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV 445 (1068)
Q Consensus 367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 445 (1068)
.+++|.+.|+++.|-.+++ |.+|...|.|++|++.+..... .+. .|...|+.+.-.|++. +.+-+.|+.+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l 81 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL 81 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence 4778999999999998876 8889999999999999976544 445 4677899999999865 899999999999
Q ss_pred EECCCCceeeEeccCCCcEEEEeeeec---CC----ccEEEEEEcCCc-EEEEeCCCCCceEEecC----CCCcEEEEEE
Q 001490 446 WDAVTGSRTYSFEGHGAPVYSLCPHAK---EN----IHFIFSISVDGK-IKAWLYDSLGARVDYDA----PGLGCTRMAY 513 (1068)
Q Consensus 446 wd~~~~~~~~~~~~h~~~v~~i~~~~~---~~----~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~----~~~~i~~~~~ 513 (1068)
|++.-+..+. .|.-.++++.|.+. .+ .+.++.-+.... +++-|............ ..+.+.+..+
T Consensus 82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9988765442 23334444443321 01 011222111110 22222222222222111 2234555543
Q ss_pred cc-CCCE-EEEEeeCCCCceeEEEEeCCCCeeee----------EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEE
Q 001490 514 SA-NGRR-LFSCGTSKEGESFLVEWNESEGAIKR----------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 581 (1068)
Q Consensus 514 s~-d~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 581 (1068)
.. ++.+ ++.++. +.+.+.+||+.++..+. ....|. .+|.++.+.+.-..=++|+.+..+..|
T Consensus 159 ~~~c~s~~lllaGy---Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 159 DHACGSTFLLLAGY---ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred cccccceEEEEEec---cCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceee
Confidence 22 3443 333332 36679999999984332 233444 889999999877777888888899999
Q ss_pred EcCCC--eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccccccc
Q 001490 582 DMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 659 (1068)
Q Consensus 582 d~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 659 (1068)
+++.. .+.......-..+++..+.+-||++.+|+++.|+.||+|+.++.+++..++.|+..+++++|+
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs---------- 302 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS---------- 302 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC----------
Confidence 88643 322111111123568899999999999999999999999999999999999999999999997
Q ss_pred ccCeeeecCCCCCCcccceeecccccceeecc
Q 001490 660 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 691 (1068)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 691 (1068)
|+...++.++.|++|.+|++
T Consensus 303 ------------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 ------------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------CCCchhhhccCCceEEeeec
Confidence 56778899999999999985
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1.3e-14 Score=159.39 Aligned_cols=275 Identities=14% Similarity=0.194 Sum_probs=178.5
Q ss_pred eEEEEEcCcCcEEEEecCC-CcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe-CCcEEEEEEc
Q 001490 324 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 401 (1068)
Q Consensus 324 ~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~-~d~~i~vwd~ 401 (1068)
+++++...++.|.+||+.+ |+...... + .+.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3455557789999999974 33221111 1 1335677899999999987764 4788999999
Q ss_pred cCCCcccceEEEccccccEEEEEEcCCCCcEEEEEE-eCCCcEEEEECCC-Cc---eeeEeccCCCcEEEEeeeecCCcc
Q 001490 402 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 476 (1068)
Q Consensus 402 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iwd~~~-~~---~~~~~~~h~~~v~~i~~~~~~~~~ 476 (1068)
.....+...... ...+....++|+|+++. ++++ ..++.|.+|++.+ +. .+..+.+ ......++++| +++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCC
Confidence 732222211121 23345678999999994 4444 3588999999874 32 2233332 23355666755 666
Q ss_pred EEEE-EEcCCcEEEEeCCCCCceEE-----e-cCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC--Ce--eee
Q 001490 477 FIFS-ISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 545 (1068)
Q Consensus 477 ~l~s-~s~dg~i~vwd~~~~~~~~~-----~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~ 545 (1068)
++++ ...++.|.+||+++...... . ...+.....++|+|||++++++.. +++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 7755 45679999999986432211 1 112345678999999999988764 356799999873 32 233
Q ss_pred EEecccc---ccCCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCe----EEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490 546 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 617 (1068)
Q Consensus 546 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 617 (1068)
.+..... .......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332210 011234688999999999975 47899999986432 22333221 2356899999999999887
Q ss_pred C-CCeEEEEECC
Q 001490 618 N-ENRIKILETP 628 (1068)
Q Consensus 618 ~-dg~i~iwd~~ 628 (1068)
. +++|.+|+++
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8999999875
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=9.2e-17 Score=168.01 Aligned_cols=270 Identities=14% Similarity=0.188 Sum_probs=192.3
Q ss_pred eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490 303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 382 (1068)
Q Consensus 303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp 382 (1068)
..+|..|.+.|+.++|+|... .+++++.||++.+|++.....-. .....+...+.+|+++|.|++.++
T Consensus 287 k~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~-----------~~~~epi~tfraH~gPVl~v~v~~ 354 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSA-----------EKDVEPILTFRAHEGPVLCVVVPS 354 (577)
T ss_pred eeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcc-----------ccceeeeEEEecccCceEEEEecC
Confidence 347889999999999999987 67999999999999993311100 011112233889999999999999
Q ss_pred CCCEEEEEeCCcEEEEEEccCCCc-------ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490 383 DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 455 (1068)
Q Consensus 383 dg~~las~~~d~~i~vwd~~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 455 (1068)
+++.+.+|+.||+|+.|++..... ......+.||++.|+.+++|+... .|++++.||++++|+...... .
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-c
Confidence 999999999999999996642211 111225679999999999999888 699999999999999766555 3
Q ss_pred EeccCC--CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC-------CCcEEEEEEccCCCEEEEEeeC
Q 001490 456 SFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 456 ~~~~h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~ 526 (1068)
++.... +...++.+.... -...++...-+.-.+.++........+... ...+..+...|.+...+++..
T Consensus 432 ~f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he- 509 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE- 509 (577)
T ss_pred ccCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-
Confidence 343222 222334332111 012222222233333333333333332221 124667788888888888775
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC
Q 001490 527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 595 (1068)
Q Consensus 527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 595 (1068)
+..|+++|..++.++.....|. ..++++++.|+|.++++++.|+.+++|.+....++.....+
T Consensus 510 ---d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 ---DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ---CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 6679999999999999888887 89999999999999999999999999999877766655443
No 197
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=8e-16 Score=147.10 Aligned_cols=182 Identities=17% Similarity=0.220 Sum_probs=128.9
Q ss_pred eeEEEEec--CCCEEEEEeCCeEEEEEccCceeEEEec-CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-ceeee
Q 001490 781 VPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 856 (1068)
Q Consensus 781 v~~l~~s~--dg~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 856 (1068)
.++-+||| ||..+++.+|++++.||+.|.+....+. .|...+..+.|.|+-..+|++++.||.|+|||.+. ..++.
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 34455666 8899999999999999999988877765 57789999999996677899999999999999976 45789
Q ss_pred eecccccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCe
Q 001490 857 KLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 934 (1068)
Q Consensus 857 ~~~~h~~~V~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~ 934 (1068)
.+.+|...|+++.|+|. .++++++|.|..|.+|....-.... .+.|-.|..-.-. ....+
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEER 314 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHHh
Confidence 99999999999999995 4778899999999999876522111 0111111000000 00001
Q ss_pred EEEEECCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEECCCcEEEEEcC
Q 001490 935 LAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 935 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~v~vwd~~ 984 (1068)
++ -+.+|... .+..|...|.+++||.-.. .+|+-+.||.+.|=.+.
T Consensus 315 ~k--pL~dg~l~--tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 315 VK--PLQDGQLE--TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cc--cccccccc--cccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 11 11222221 2567899999999987554 56778889988775544
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=8.8e-16 Score=152.40 Aligned_cols=293 Identities=11% Similarity=0.076 Sum_probs=208.4
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCc---ccceEEEc--cccccEEEEEEcCCCCcEEEEEEeCCCc
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKT 442 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~---~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 442 (1068)
+.+|.+.|.++.||.++++||+|+.|..+.+|+++..-. .++. .+. .|...|.|++|...++ .+++|+.+++
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~ 128 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENR--FLYSGERWGT 128 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCe--eEecCCCcce
Confidence 678999999999999999999999999999999863211 1111 222 3557999999998888 8999999999
Q ss_pred EEEEECCCCceeeEecc--CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc---eEEecCCCCcEEEEEEccCC
Q 001490 443 IKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG 517 (1068)
Q Consensus 443 i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~ 517 (1068)
|.+.|+++.+.+..+.. ..+.|+.+..+|. ...+++.+.+|.|.+||.+.... .......+.....+.|+|-.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999998887742 2358999998886 35899999999999999987552 33334445578889999977
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCee-eeE---EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE-EEE
Q 001490 518 RRLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTI 592 (1068)
Q Consensus 518 ~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~ 592 (1068)
..|+....... -+-+||.+.... +.. +.+.......-.++.|+|+|+++++--....-.+||+...++. ..+
T Consensus 207 P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 207 PALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 76665544333 378899875432 111 2222211223467889999999988766555667887764432 222
Q ss_pred eCCC----CCCCCceEEEecCCCEEEEEECCCeEEEEECCCC-----------------------ceeeeccccccceee
Q 001490 593 DAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRK 645 (1068)
Q Consensus 593 ~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~i~~ 645 (1068)
.... ....+.+++|--|- .+++|+++=.|++|.+... ..+..+++|...+..
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 2111 11235567776554 4999999999999998732 234455666666666
Q ss_pred eEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecc
Q 001490 646 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 691 (1068)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 691 (1068)
+.|+ +...++++.+-.+.+++|..
T Consensus 363 VRF~----------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 363 VRFS----------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeec----------------------CCcceEeccchhhheecccc
Confidence 6664 55677888888899999974
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=2.4e-15 Score=144.08 Aligned_cols=289 Identities=18% Similarity=0.258 Sum_probs=205.4
Q ss_pred eeecccCCCCceEEEEc--CCCCeEEEEEcCc----CcEEEEec--CCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490 303 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTNV----GDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 374 (1068)
Q Consensus 303 ~~~l~~h~~~V~~v~~s--pdg~~lla~gs~d----g~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 374 (1068)
+.++..+- .+.++.|| |+.+..||.|+.- +.|.|-.+ .+++.+...+ ..|..+
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 33444443 67888888 6666778999853 44555444 4455443322 248889
Q ss_pred eEEEEECCCCC-----EEEEEeCCcEEEEEEccCCCc-ccceEE-----EccccccEEEEEEcCCCCcEEEEEEeCCCcE
Q 001490 375 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGSD-ARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTI 443 (1068)
Q Consensus 375 V~~~~~spdg~-----~las~~~d~~i~vwd~~~~~~-~~~~~~-----~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 443 (1068)
++.+.|.||.+ +||+++ ..+++|.+...+. +..... -..+..++++..|+.-... ++.+.+-|.+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999863 566553 3599999974221 111111 2246679999999876665 89999999999
Q ss_pred EEEECCCCce---eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEe-cCC--CCcEEEEEEcc-C
Q 001490 444 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAP--GLGCTRMAYSA-N 516 (1068)
Q Consensus 444 ~iwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~--~~~i~~~~~s~-d 516 (1068)
.|||+++|.. ...+-.|...|..++|.. +..+.+++.+.||.+|++|++.......+ ... ..+...++|++ |
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999998733 456778999999999986 34568999999999999999987654432 222 34778899988 4
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCCeE------
Q 001490 517 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------ 588 (1068)
Q Consensus 517 ~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------ 588 (1068)
-+++++...+ ...|.+.|++. ...+..+++|. ..|+.++|.|.. ..|.++++|..+.|||+...-.
T Consensus 255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 5677766543 33589999986 45678889988 999999999974 5778899999999999975322
Q ss_pred EEEEeCCCCCCCCceEEEec-CCCEEEEEECCCeEEE
Q 001490 589 LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKI 624 (1068)
Q Consensus 589 ~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 624 (1068)
+.... ....|+.+.|++ .+..++++.. +.+.+
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 22222 234589999997 5677877765 44444
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.6e-16 Score=159.55 Aligned_cols=198 Identities=17% Similarity=0.204 Sum_probs=162.9
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecc
Q 001490 782 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 860 (1068)
Q Consensus 782 ~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~ 860 (1068)
.+++|+.||..++++. ||++|||+......+.....|...|.++.||| ||++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999988888888888999999999999 99999999999 899999999977666542
Q ss_pred --cccCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCceeee-eeeecCCCcccCCCCceEEEEeeCCCEEEE-Ee
Q 001490 861 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 931 (1068)
Q Consensus 861 --h~~~V~~l~~spdg-----~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~ 931 (1068)
.......+.|+.|+ ..++....-+.|+.|++........ +..+....+. .|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence 23346678898887 4444455566788888766443211 1112222222 5999999999999999 58
Q ss_pred CCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001490 932 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 985 (1068)
Q Consensus 932 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~ 985 (1068)
||.|.|++..+.+++.-....|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999888889999999999999999999999999999887775
No 201
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.68 E-value=4.1e-12 Score=130.21 Aligned_cols=415 Identities=12% Similarity=0.113 Sum_probs=233.2
Q ss_pred CCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE-------eCCc
Q 001490 322 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-------YSKH 394 (1068)
Q Consensus 322 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~-------~~d~ 394 (1068)
|.+++.+++.| +..+++.+|+..+ +..|-+-|....|+|||+.+|.. ...+
T Consensus 50 GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~ta 107 (668)
T COG4946 50 GDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTA 107 (668)
T ss_pred CcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEecCCCccc
Confidence 44577777653 5555667776654 55677889999999999999873 1234
Q ss_pred EEEEEEccCCCcccceEEEccccccEEE-EEEcCCCCcEEEEEEeCCCcEEEE----ECCC-CceeeEeccCCCcEEEEe
Q 001490 395 IVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW----DAVT-GSRTYSFEGHGAPVYSLC 468 (1068)
Q Consensus 395 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~d~~~~~l~s~~~d~~i~iw----d~~~-~~~~~~~~~h~~~v~~i~ 468 (1068)
.+.+.+.+.|+..+. ++-| ...+. +.|+|||+ ++++.....-.--| .+.. |-....+ .-++.+.+.
T Consensus 108 Dly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlGpathiv 179 (668)
T COG4946 108 DLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLGPATHIV 179 (668)
T ss_pred cEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCCceeeEE
Confidence 588888888875432 2223 33333 45999998 67765443322222 2211 1101111 122333333
Q ss_pred eeecCCccEEEEEEcCC------------cEEEEeCCCCC-ceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490 469 PHAKENIHFIFSISVDG------------KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 535 (1068)
Q Consensus 469 ~~~~~~~~~l~s~s~dg------------~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 535 (1068)
+ .|| .++.|-..- .=++|--..+. ....+..-.+.|.+-.+-.+.-++++ +-+|-+.++-
T Consensus 180 ~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG~GnlYS 252 (668)
T COG4946 180 I---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEGVGNLYS 252 (668)
T ss_pred E---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccCccceEE
Confidence 2 133 222221110 11233222222 11111111222222222222223333 3345666777
Q ss_pred EeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC----CC--CC----CCceEE
Q 001490 536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GG--LP----ENPRIC 605 (1068)
Q Consensus 536 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~--~~----~v~~v~ 605 (1068)
-|+....+.+...- ..-.+-..+.||++++- +.-|.|++||.++..... +... .. .. +..-+.
T Consensus 253 vdldGkDlrrHTnF-----tdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyle 325 (668)
T COG4946 253 VDLDGKDLRRHTNF-----TDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLE 325 (668)
T ss_pred eccCCchhhhcCCc-----hhccccccCCCCcEEEE-ecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhh
Confidence 77654332221111 12233345678887765 345789999988754432 2211 00 00 001111
Q ss_pred -Eec-CCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccc
Q 001490 606 -FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 683 (1068)
Q Consensus 606 -~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 683 (1068)
|++ +|.+++..+. |...|.+.-.+-.++.
T Consensus 326 dfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv------------------------------------------------ 356 (668)
T COG4946 326 DFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV------------------------------------------------ 356 (668)
T ss_pred hhccCCCcEEEEEec-CcEEEECCCCCeeEEc------------------------------------------------
Confidence 333 5777777766 5555554333221111
Q ss_pred ccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCc-cEEEEeccCCccCCCccceeccCCcccCCC
Q 001490 684 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPR 762 (1068)
Q Consensus 684 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1068)
++.+.|.-..+..+++.++.+..|| .+-|++....
T Consensus 357 ------------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-------------------- 392 (668)
T COG4946 357 ------------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-------------------- 392 (668)
T ss_pred ------------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------------
Confidence 1333455555666666778888877 6777765432
Q ss_pred CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECC
Q 001490 763 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 841 (1068)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 841 (1068)
+ ..... +.-+.|.++..++||++++++.+ ..+.+.|++++.....-+...+-|+..+|+| +++++|.+--+
T Consensus 393 --e-~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~ 464 (668)
T COG4946 393 --E-VKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPE 464 (668)
T ss_pred --e-EEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCc
Confidence 2 11110 24578999999999999999986 7799999999988766666778999999999 99999998777
Q ss_pred C----eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeC
Q 001490 842 S----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 882 (1068)
Q Consensus 842 g----~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 882 (1068)
| .|++||+.+++....-. ..+.=.+-+|.|||++|..-+.
T Consensus 465 gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 465 GYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 6 78999999887654433 2233356789999999887654
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5e-15 Score=167.48 Aligned_cols=235 Identities=13% Similarity=0.111 Sum_probs=162.9
Q ss_pred cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCccc
Q 001490 332 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 408 (1068)
Q Consensus 332 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~ 408 (1068)
+..|.+||....... . +..|...+.+.+|||||++||+++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998765422 1 55678889999999999999988654 479999998875321
Q ss_pred ceEEEccccccEEEEEEcCCCCcEEEEE-EeCCCcEEE--EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEE-cC
Q 001490 409 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKV--WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 484 (1068)
Q Consensus 409 ~~~~~~~h~~~v~~l~~s~d~~~~~l~s-~~~d~~i~i--wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~d 484 (1068)
...+.+| ...++|+|||+ .|+. .+.++.+.| ||+.++. ...+..+...+....|++ ||+.|+.++ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 1123333 44789999999 4554 446776555 5666665 455666777777788866 677666554 67
Q ss_pred CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490 485 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 485 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
|..++|+++..........+.. ....|+|||++++..+. ..+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8889998765433222222222 45789999999988764 23777999988764332221 234678999
Q ss_pred CCCEEEEEECCCeEEEEEc--CCCeEEEEEeCCCCCCCCceEEEecC
Q 001490 565 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN 609 (1068)
Q Consensus 565 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 609 (1068)
+|++|+.++.++...+|.+ .+|..+..+..+. ..+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999999998888875 3577777776543 34778899884
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=1.6e-13 Score=149.38 Aligned_cols=318 Identities=10% Similarity=0.122 Sum_probs=201.7
Q ss_pred ceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecC
Q 001490 530 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609 (1068)
Q Consensus 530 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 609 (1068)
++.|.+.|..+.+.+.++.... ..-..+.|+||++++++++.||.|.++|+.+++.+.++..... ...+++|+|
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D 88 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD 88 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence 6679999999999999998654 3345578999999999999999999999999999999986533 578999999
Q ss_pred CCEEEEEE-CCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490 610 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 688 (1068)
Q Consensus 610 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~ 688 (1068)
|++++++. .++.+.++|..+.+.+..+.......
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--------------------------------------------- 123 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--------------------------------------------- 123 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---------------------------------------------
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccc---------------------------------------------
Confidence 99998776 58999999999988777654211100
Q ss_pred ecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecC-ccEEEEeccCCccCCCccceeccCCcccCCCCCCce
Q 001490 689 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 767 (1068)
Q Consensus 689 wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1068)
.....++.++..++....++..-.+ +.+.+-|+..... +
T Consensus 124 ------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~----------------------~ 163 (369)
T PF02239_consen 124 ------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN----------------------L 163 (369)
T ss_dssp ------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC----------------------E
T ss_pred ------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc----------------------c
Confidence 0023456777788888866555554 6666555443210 1
Q ss_pred eeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEccCceeEEEecC----CCCCeEEEEEeCC---------CC
Q 001490 768 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPTATSLAFNPH---------DN 832 (1068)
Q Consensus 768 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------d~ 832 (1068)
....+ ..........|+|+++|++++. .+.|.++|.++++.+..+.. |..+...+ .+|. .+
T Consensus 164 ~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred ceeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 11111 1234556789999999998876 57899999999988766532 33333322 1221 22
Q ss_pred CEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEE----eCCCcEEEEECCCCceeeeeeeecCCCc
Q 001490 833 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGV 908 (1068)
Q Consensus 833 ~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 908 (1068)
...++.-....+.+|+..+.+.++++....++ .-+.-+||++++... ...++|.++|.++.+... .+....+
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~- 315 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG- 315 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-
Confidence 22222222335667888889999999877666 778889999999987 455889999999864221 1211111
Q ss_pred ccCCCCceEEEEeeCCCEEEEE---eCCeEEEEECCCceeeeeec
Q 001490 909 MTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF 950 (1068)
Q Consensus 909 ~~~~~~v~~~~~spdg~~la~~---~d~~i~vwd~~~~~~~~~~~ 950 (1068)
..+..+.|++||+++..+ .++.|.|||..+.+.+.++.
T Consensus 316 ----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 ----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 147899999999988763 34489999999999888644
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=3.4e-13 Score=146.74 Aligned_cols=332 Identities=15% Similarity=0.162 Sum_probs=207.9
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEE
Q 001490 431 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 510 (1068)
Q Consensus 431 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 510 (1068)
.+++++-..++.|.+.|..+.+.+.++......-..+.+ ++||+++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 345677778999999999999999999765554344555 4588899999999999999999999887776544 5678
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----ccCCeEEEEEecCCCEEEEE-ECCCeEEEEEcCC
Q 001490 511 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 585 (1068)
Q Consensus 511 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~ 585 (1068)
+++|+||++++++... .+.+.++|.++.+.++.+..... ....+..+..+|....++.. -+.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 55799999999999888765321 12467788888888855554 4558888889877
Q ss_pred CeEE--EEEeCCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccC
Q 001490 586 VQLL--TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 662 (1068)
Q Consensus 586 ~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 662 (1068)
.+.+ ..+... .......|+|++++++++ ..++.|.++|..+++.+..+.....
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~--------------------- 215 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK--------------------- 215 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS---------------------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc---------------------
Confidence 6544 333322 224678999999988775 4467899999887755443321000
Q ss_pred eeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCC
Q 001490 663 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 742 (1068)
Q Consensus 663 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 742 (1068)
.|..+...+ .+|..- .+|.
T Consensus 216 ---------------------------------------------p~~~~~~~~-php~~g-----------~vw~---- 234 (369)
T PF02239_consen 216 ---------------------------------------------PHPGPGANF-PHPGFG-----------PVWA---- 234 (369)
T ss_dssp ---------------------------------------------BEETTEEEE-EETTTE-----------EEEE----
T ss_pred ---------------------------------------------ccccccccc-cCCCcc-----------eEEe----
Confidence 011111111 111111 0111
Q ss_pred ccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCCeEEEEEccCceeEEEecCCCCC
Q 001490 743 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMPPSPT 821 (1068)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 821 (1068)
.+..+... ...+.+.+.+||..+++.++++......
T Consensus 235 -------------------------------------------~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 235 -------------------------------------------TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp -------------------------------------------EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred -------------------------------------------eccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 01111111 1122345557888889999998876666
Q ss_pred eEEEEEeCCCCCEEEEE----ECCCeEEEEEcCCceeeeeecccc-cCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCC
Q 001490 822 ATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGDA--QIFVWDVDGW 894 (1068)
Q Consensus 822 i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~dg--~i~iwd~~~~ 894 (1068)
.-+..+| +++++.+. ...++|.++|.++.+.+..+.... ..+..+.|++||+++..+..++ .|.++|..+.
T Consensus 272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 7888899 88888887 445899999999998887776433 3588999999999876655443 6999999997
Q ss_pred ceee
Q 001490 895 GIQT 898 (1068)
Q Consensus 895 ~~~~ 898 (1068)
+...
T Consensus 350 ~~~~ 353 (369)
T PF02239_consen 350 KEKK 353 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7555
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.5e-14 Score=161.70 Aligned_cols=194 Identities=17% Similarity=0.161 Sum_probs=146.5
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecC-CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc---eeeeeecccccC-
Q 001490 790 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR- 864 (1068)
Q Consensus 790 g~~l~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~~~~h~~~- 864 (1068)
|.++++|.-..|+|||+........+.. ....++++.-+...|.++++|..||.|++||.+.. ..+...+.|++.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 4444444457899999998777776653 44577888776657899999999999999998754 357778889988
Q ss_pred -eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCC
Q 001490 865 -VTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 942 (1068)
Q Consensus 865 -V~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~ 942 (1068)
|..+.+-+.|-- |++|+.||.|++||+..........+ ..+...++..+++..+++...+|+|+.+.|+||++.
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~- 1333 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS- 1333 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecC-
Confidence 999999887754 99999999999999987432221111 122222235899999999999999777999999986
Q ss_pred ceeeeee------ccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001490 943 LTCLKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 987 (1068)
Q Consensus 943 ~~~~~~~------~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~ 987 (1068)
|+.+..+ .....+.+.+++|.|---+||+|+.|.+|.||.....+
T Consensus 1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 3333221 12235678999999999999999999999999887654
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.7e-15 Score=153.72 Aligned_cols=197 Identities=21% Similarity=0.203 Sum_probs=151.8
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeee
Q 001490 823 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 902 (1068)
Q Consensus 823 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 902 (1068)
.+++|+. +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.++.... -
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence 7899999 89999999999999999998888888888899999999999999999999999 79999999973211 1
Q ss_pred ecCCCcccCCCCceEEEEeeCC---CE-EEE-E-eCCeEEEEECCCcee-----eeeeccCCCcCEEEEEEecCCCEEEE
Q 001490 903 QTPDGVMTLAPSETHIQFHKDQ---TR-FLL-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 971 (1068)
Q Consensus 903 ~~~~~~~~~~~~v~~~~~spdg---~~-la~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t 971 (1068)
..+.+.. .....+.|+.|+ .+ +++ . .-+.|..|++..... .++ .......|++++.|+||++++.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-hhhccCcceeEEEcCCCcEEEE
Confidence 1111211 257788999988 33 333 2 334566665542221 111 1122458999999999999999
Q ss_pred EECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001490 972 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus 972 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
|+.||.|.|++..+.+.+.-.. ..|. ..++.+.|+| |.+.+++.+.|.+.++..++-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-------~aH~--~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-------EAHL--GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-------hhhe--eeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999988875444 1122 4567899999 789999999999999999875
No 207
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=4.7e-14 Score=156.85 Aligned_cols=250 Identities=17% Similarity=0.168 Sum_probs=181.3
Q ss_pred CCcceEEEEECC-CCCEEEEEeCCcEEEEEEccCCCcc--cc-eEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490 371 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446 (1068)
Q Consensus 371 h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~--~~-~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 446 (1068)
....|.|+.|+| +..++|.|+.+|.|.+||+..+... .. ......|..+++.+.|..+-...-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 456899999999 5677888899999999999887652 11 1123468889999999765432248999999999999
Q ss_pred ECCCCce------eeEec------cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc--------eEEecCCCC
Q 001490 447 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 506 (1068)
Q Consensus 447 d~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~~ 506 (1068)
+++.-.. ..... .-...++++.|.+. +-..++.|+++|.|..-+...... ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8763322 11111 12345778888765 446799999999988733222211 225566788
Q ss_pred cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEeccccccCCeEEEEEecCCCEE-EEEECCCeEEEEEcC
Q 001490 507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 584 (1068)
Q Consensus 507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~ 584 (1068)
+|.++.++|-+..++..+. |.+++||... ...++..+..+. ..+.+++|+|...-+ +++..||.|.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998776665543 7789999987 566666666655 679999999987655 457789999999997
Q ss_pred CCe--EEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 585 KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 585 ~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
... ++.+.... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 543 34443333 345677888999999999999999999999754
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=1e-13 Score=157.84 Aligned_cols=256 Identities=13% Similarity=0.110 Sum_probs=181.4
Q ss_pred ecCCCcceEEEEECCCC-CEEEEEeCCcEEEEEEccCC----CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCc
Q 001490 368 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 442 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 442 (1068)
+..|+..|..++.+++. .++++|+.||+|++||...- ...+...++.....++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 66788888898888764 99999999999999998642 22333334444567899999999999 6888899999
Q ss_pred EEEEECCCC--ce-----eeEecc-CCCcEEEE-eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEe--cCCCCcEEEE
Q 001490 443 IKVWDAVTG--SR-----TYSFEG-HGAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRM 511 (1068)
Q Consensus 443 i~iwd~~~~--~~-----~~~~~~-h~~~v~~i-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~ 511 (1068)
|++.++... +. .+.... ..+.+.++ ++........|+.+..-+.|..||.+........ ....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 11 111111 22334444 3332222237888999999999999887765543 4455689999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC---CCEEEEEE--CCCeEEEEEcCCC
Q 001490 512 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 586 (1068)
Q Consensus 512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~ 586 (1068)
+.+|-+.++++|.. .|.+.+||++=+.++....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999986 6679999999888887766443 356776666654 34555543 5788999999999
Q ss_pred eEEEEEeCCCCC-----------------CCCceEEEecCCCEEEEEECCCeEEEEECCCCc
Q 001490 587 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESN 631 (1068)
Q Consensus 587 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 631 (1068)
.....+...... ......++...+..+.+|+.|..|+.||.....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 777666443110 011223344456788999999999999988653
No 209
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=1e-13 Score=133.10 Aligned_cols=243 Identities=14% Similarity=0.154 Sum_probs=174.4
Q ss_pred CCCCCeeEEEEecCCC----EEEEEeCCeEEEEEccCce--e--EEEe-----cCCCCCeEEEEEeCCCCCEEEEEECCC
Q 001490 776 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTFK--T--ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 842 (1068)
Q Consensus 776 ~~~~~v~~l~~s~dg~----~l~~~~dg~i~iwd~~~~~--~--~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg 842 (1068)
.|..+++.+.|.|+.+ -+...++..+|+|.+...+ . ...+ ..+..++++..|..-+.++|.+.+-|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 3889999999999874 2334456789999987422 1 1111 235568999999987889999999999
Q ss_pred eEEEEEcCCce---eeeeecccccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEE
Q 001490 843 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 918 (1068)
Q Consensus 843 ~v~iwd~~~~~---~~~~~~~h~~~V~~l~~spdg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 918 (1068)
+..|||++++. ....+-+|..+|..++|+.++ +.+|+.|.||.|+++|+..-+-.+ .....+..+ .+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-IIYE~p~~~----~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-IIYEDPSPS----TPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-EEecCCCCC----Ccceee
Confidence 99999999873 356788899999999999865 678999999999999998754222 222222222 357888
Q ss_pred EEeeCC-CEEEE-E-eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCcEEEEecc
Q 001490 919 QFHKDQ-TRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS 994 (1068)
Q Consensus 919 ~~spdg-~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 994 (1068)
+|++.. +++|+ . ....|.|.|++.......-+.+|.+.|.+++|.|. ...|.|++.|..+.+||+.+--......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 888865 56666 4 44679999998766554457789999999999995 47899999999999999986433111111
Q ss_pred ccccCCCCccCcccceEEEECCCCCCEEEEEeCC
Q 001490 995 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1028 (1068)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~d 1028 (1068)
...... +..+ --+.|+|..++-++.+...
T Consensus 329 ilay~a---~~EV--Nqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 329 ILAYTA---GGEV--NQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhhhc---ccee--eeeeecccCCCEEEEEecC
Confidence 111111 1222 2477887667777776644
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=5.6e-14 Score=146.11 Aligned_cols=169 Identities=11% Similarity=0.150 Sum_probs=127.2
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCceeEEEec----CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC----------
Q 001490 787 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 851 (1068)
Q Consensus 787 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---------- 851 (1068)
.+.+--+..+- -|.+.+.|....+..+.+. -....++|+.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 35666666665 4888888875422222111 12368999999996667777788999999997521
Q ss_pred ----c--------------eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCC
Q 001490 852 ----S--------------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 913 (1068)
Q Consensus 852 ----~--------------~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 913 (1068)
+ .++..+.--.+.|...+|||||++||+.+.||.++|+|+.+.+ ++...+... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 1 1122222234578889999999999999999999999999844 344444444 3
Q ss_pred CceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEec
Q 001490 914 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 964 (1068)
Q Consensus 914 ~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 964 (1068)
...|++|||||++|++ |.|.-|.||.+..++.+.. -.+|...|+.++|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6889999999999988875 678999999999997
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=9.9e-14 Score=135.34 Aligned_cols=231 Identities=13% Similarity=0.070 Sum_probs=174.2
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~ 386 (1068)
+.-.++|+|.||++|+. .+|++-....|.||.......-. ....+..|...|+.+.|+|.+..
T Consensus 7 ~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snr 69 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNR 69 (361)
T ss_pred eeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCc
Confidence 33445999999999997 67888888899999987665211 11237789999999999999999
Q ss_pred EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee----eEeccCCC
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGA 462 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~ 462 (1068)
|++|+.|..-+||....+...++...+..+....+++.|+|.+. .+++|+.-..|.||-.+...-= +.-+.+..
T Consensus 70 Ivtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirS 147 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS 147 (361)
T ss_pred eeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence 99999999999999966666666667888999999999999999 7999999999999876644321 22245678
Q ss_pred cEEEEeeeecCCccEEEEEEcCCcEEEEeC-----CC-------------CCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490 463 PVYSLCPHAKENIHFIFSISVDGKIKAWLY-----DS-------------LGARVDYDAPGLGCTRMAYSANGRRLFSCG 524 (1068)
Q Consensus 463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~-----~~-------------~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 524 (1068)
.|.++.|++ ++-+|++|+.|+..+++.. +. +.....+....+.+..+.|+|+|..|+-.+
T Consensus 148 tv~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 148 TVTSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred ceeeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 899999988 5568999999999999853 11 111223335567899999999999999887
Q ss_pred eCCCCceeEEEEeCCCCe-eeeEEeccccccCCeEEEEEecC
Q 001490 525 TSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTA 565 (1068)
Q Consensus 525 ~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 565 (1068)
. +..+.+-|..... .+......+ -+..++.|-.+
T Consensus 226 H----ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise 260 (361)
T KOG1523|consen 226 H----DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISE 260 (361)
T ss_pred C----CCceEEeecCCCchhccchhhcc---CCceeeEeecC
Confidence 6 5568888876654 233333222 45666666544
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=7.6e-14 Score=156.10 Aligned_cols=297 Identities=15% Similarity=0.200 Sum_probs=206.0
Q ss_pred cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC--CCC
Q 001490 308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGS 385 (1068)
Q Consensus 308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--dg~ 385 (1068)
+.......+.|+|-.. .++++.....|+|||.+.++.+..+ |.+. .....|+.+.+-. |..
T Consensus 1062 ~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F-----~n~~-----------~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGF-----DNGA-----------FPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred cCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccc-----cCCC-----------CCCCccceeeeecccchh
Confidence 3344577889999887 5577776688999999999887542 1111 1345788888865 567
Q ss_pred EEEEEeCCcEEEEEEcc-CC-Cc---ccceEEEccc----cccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490 386 LLGVAYSKHIVQLYAYH-GG-SD---ARQQLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 456 (1068)
Q Consensus 386 ~las~~~d~~i~vwd~~-~~-~~---~~~~~~~~~h----~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 456 (1068)
++.+|+.||.|+||+-- .+ +. +.....+.++ .+.=.-+.|-.... .|+++|.-..|+|||.........
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEee
Confidence 89999999999999643 32 11 1111112221 11113456776666 566666688999999998888776
Q ss_pred ecc-CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc---eEEecCCCCc--EEEEEEccCCCE-EEEEeeCCCC
Q 001490 457 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKEG 529 (1068)
Q Consensus 457 ~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~d~~~-l~~~~~~~~~ 529 (1068)
+.. ....|+++.-.-. .|..+++|..||.|++||.+.... +...+.|... |..+.+-+.|-. |++++.
T Consensus 1203 iP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---- 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---- 1277 (1387)
T ss_pred cccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----
Confidence 643 4455666654433 478999999999999999876543 4456666665 999999887765 888886
Q ss_pred ceeEEEEeCCCCeeeeEE--eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC-----CCCCCCc
Q 001490 530 ESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENP 602 (1068)
Q Consensus 530 ~~~i~~wd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~ 602 (1068)
+|.|++||++.......+ ..|..-.+..+++..++....+++|+. +.|.||++.. +.+..+... .....+.
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcc
Confidence 555999999875222211 111100124899999999999999988 9999999864 444333221 1234578
Q ss_pred eEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 603 RICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 603 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
+++|+|..-++|+|+.|.+|.||.....
T Consensus 1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeecchhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999999987654
No 213
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=6.8e-12 Score=141.76 Aligned_cols=277 Identities=15% Similarity=0.130 Sum_probs=189.5
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCC--cceEEEEECCCCCEEEE
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG--VSVNRVVWSPDGSLLGV 389 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~spdg~~las 389 (1068)
.+.+.++-. ++|+| |+ .-.|.+||+.++..+.... +...+..|. ..+. -.+.++++
T Consensus 9 ~l~~~~~~~--~~lla-g~-gp~i~~yd~~s~~li~~~~-------------~~~~~~~H~~e~~~~-----l~~~~~v~ 66 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLA-GS-GPEILVYDLSSGCLIRHLI-------------QSKILEVHRGEGKVK-----LLSGKIVT 66 (967)
T ss_pred cccchhhcc--ceeee-cC-CCceEEeeCCchhHhhhhh-------------hhcccccccccccce-----eccceEEE
Confidence 344444444 34544 33 2679999999998775311 111133340 1111 12344555
Q ss_pred EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE-EE-E
Q 001490 390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-YS-L 467 (1068)
Q Consensus 390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-~~-i 467 (1068)
+..-+.+..=+..-. .+..-.+.|....+.-+.+ .++.+..+..+.+||...+.....+....... .+ +
T Consensus 67 ~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~ 137 (967)
T KOG0974|consen 67 CAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSL 137 (967)
T ss_pred EEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEE
Confidence 543333333222211 1112233444566666677 57777778899999998887776664322211 11 1
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeee-E
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-T 546 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~ 546 (1068)
-+-.+.+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++-||+++++++. |..+++|++++++... .
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~ 213 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCT 213 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCcc
Confidence 1222345568999999999999998855555578899999999999999999999997 6679999999988776 5
Q ss_pred EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001490 547 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 626 (1068)
Q Consensus 547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 626 (1068)
.-+|. ..+..+.|.|+ .++++++|-+.++|+.+ +..+..+..|.. ..+..++..++....++++.|+.+++|+
T Consensus 214 ~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 214 GFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ccccc---ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhh
Confidence 56666 89999999998 89999999999999764 455556666554 4689999999999999999999999999
Q ss_pred CCCC
Q 001490 627 TPES 630 (1068)
Q Consensus 627 ~~~~ 630 (1068)
+...
T Consensus 287 l~~r 290 (967)
T KOG0974|consen 287 LNGR 290 (967)
T ss_pred hhcc
Confidence 8753
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.3e-14 Score=162.08 Aligned_cols=231 Identities=18% Similarity=0.194 Sum_probs=151.4
Q ss_pred CCccceeeecccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490 297 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 374 (1068)
Q Consensus 297 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 374 (1068)
+......+.+..|...+...+|||||++++.++..+ ..|.+||+.+++...... +.+|
T Consensus 190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~--- 249 (429)
T PRK01742 190 DYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH--- 249 (429)
T ss_pred CCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc---
Confidence 334445677888888999999999999664443322 469999998876432111 2233
Q ss_pred eEEEEECCCCCEEEEEe-CCcEEEE--EEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490 375 VNRVVWSPDGSLLGVAY-SKHIVQL--YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 451 (1068)
Q Consensus 375 V~~~~~spdg~~las~~-~d~~i~v--wd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 451 (1068)
...++|||||++|++++ .+|.+.| ||+.+++. . .+..+...+...+|+|||+. ++++...++...||++...
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECC
Confidence 34689999999998875 5776555 56666542 2 45567777889999999995 3334456778888876432
Q ss_pred -ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490 452 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 452 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
.....+ .+.. ....|+ +||+.|+..+.++ +.+||+.++........ .....+.|+|||++++.++.++. .
T Consensus 325 ~~~~~~l-~~~~--~~~~~S--pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~-~ 395 (429)
T PRK01742 325 GGGASLV-GGRG--YSAQIS--ADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL-G 395 (429)
T ss_pred CCCeEEe-cCCC--CCccCC--CCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-c
Confidence 222333 3433 344554 4778888887765 55599887765433222 13356789999999999875322 2
Q ss_pred eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC
Q 001490 531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 565 (1068)
Q Consensus 531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 565 (1068)
..+.+++ .+|..++.+..+. +.+...+|+|-
T Consensus 396 ~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 396 KVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred eEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 2233344 3577777787766 67888889874
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=6e-15 Score=151.48 Aligned_cols=296 Identities=14% Similarity=0.140 Sum_probs=223.8
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
|.+|.+.|..|.|...|..|++|+.|..|.+||+.++..... -..+|...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 778999999999999999999999999999999998875443 235899999988898875444799999999999876
Q ss_pred CC-CCcee--eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec---CCCC---cEEEEEEccCCC
Q 001490 448 AV-TGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGL---GCTRMAYSANGR 518 (1068)
Q Consensus 448 ~~-~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~---~i~~~~~s~d~~ 518 (1068)
+. ++.+. ..+..|.++|.-++.-|. ....|.+++.|+.+.-.|++.......+. .... ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 34332 455679999999988764 34578999999999999988766543322 1222 467888888666
Q ss_pred -EEEEEeeCCCCceeEEEEeCCCCee------eeEEecccc---ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC--C
Q 001490 519 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 586 (1068)
Q Consensus 519 -~l~~~~~~~~~~~~i~~wd~~~~~~------~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~ 586 (1068)
.+++++. +.++++||.+.-.. +.++..+.. ..-.|++++|+.++.-+++...|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5666654 66789998764221 233332221 124589999998888899999999999995442 2
Q ss_pred ----------eEEEE-EeCCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccc
Q 001490 587 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 654 (1068)
Q Consensus 587 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 654 (1068)
..+.. +++|.....|..+-| -|...++++|++=|.|.||+-.+++.+..+.+...-|+|+.-+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH----- 445 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH----- 445 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC-----
Confidence 12222 556655555777765 5788899999999999999999999999999888888888776
Q ss_pred cccccccCeeeecCCCCCCcccceeecccccceeeccc
Q 001490 655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 692 (1068)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 692 (1068)
|--..|++.+-|..|+||...
T Consensus 446 -----------------P~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 446 -----------------PHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -----------------CCCchhhccCCccceeeecCC
Confidence 445678899999999999863
No 216
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=9.5e-14 Score=154.45 Aligned_cols=253 Identities=17% Similarity=0.202 Sum_probs=184.5
Q ss_pred CCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE--EE
Q 001490 311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL--LG 388 (1068)
Q Consensus 311 ~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~--la 388 (1068)
.+|.|++|+|....++|.|..+|.|.+||+..+....... -......|..+|..+.|-.+-.- ++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh~~~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSHSEPVTAVVWLQNEHNTEFF 309 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccCCcCeEEEEEeccCCCCceE
Confidence 4899999999999999999999999999998876531000 01124568999999999876544 99
Q ss_pred EEeCCcEEEEEEccCCCcccceEEEc---------cccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE---CCCCc----
Q 001490 389 VAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS---- 452 (1068)
Q Consensus 389 s~~~d~~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd---~~~~~---- 452 (1068)
+++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+|.|.-=+ ...+.
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcccccccc
Confidence 99999999999886543311110111 11236899999988776 788899999887733 22222
Q ss_pred -eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC-CCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490 453 -RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 453 -~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
.+..+..|.++|+++.++|-.. ..+++++ |-++++|.-. .......+..+...+++++|||-...++++. +++
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---d~~ 463 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---DGD 463 (555)
T ss_pred cccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---cCC
Confidence 1335567899999999877533 2444444 9999999888 6666777777777899999999877666654 347
Q ss_pred eeEEEEeCCCCe--eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 001490 531 SFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 585 (1068)
Q Consensus 531 ~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 585 (1068)
|.|.+||+.... ++.+..-.. .....+.|+++|+.+++|...|++.+|++..
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 889999987543 333332222 5677888999999999999999999999864
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=1.5e-11 Score=139.02 Aligned_cols=200 Identities=15% Similarity=0.166 Sum_probs=152.6
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 391 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~ 391 (1068)
.|....+.-+.+ .++.++.+..+.|||...+....... .+. ... -....-+.++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~e---r~~-----l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDE---RCT-----LYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCc---eEE-----EEeEEEEeccCcEEEEEecc
Confidence 344455556665 56778888999999998877664310 000 000 01233355788888999999
Q ss_pred CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeee
Q 001490 392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH 470 (1068)
Q Consensus 392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i~~~ 470 (1068)
.-+.|.+|+....+. ...+.+|.+.|.++.|+.||+ ++++.++|.++++|++++++... ..-+|.+.|..++|.
T Consensus 153 v~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccCC---cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 999999999983321 115789999999999999999 89999999999999999998776 667899999999997
Q ss_pred ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC-CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001490 471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 541 (1068)
Q Consensus 471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 541 (1068)
+. .+++++.|.+.++|+.+..... .+..|. ..+..++..++...+++++. |+.+++||....
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 63 8999999999999976554433 555544 47899999999888888876 667999997653
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=8.6e-13 Score=130.75 Aligned_cols=288 Identities=16% Similarity=0.157 Sum_probs=190.0
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-CCEEEEE
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA 390 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g~~las~ 390 (1068)
.+..++|++--- -+|++..|-+|++||-+......- -......|+|++|-|. ++-|++|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~L-------------------ks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTKL-------------------KSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCCCcee-------------------cchhhcceeEEEeccCCcceeeee
Confidence 577889988543 457888999999999876322110 1123468999999996 5678888
Q ss_pred eCCcEEEEEEccCCCcc-----------cceEEEccccccEEEEEEcCCCCcEEEEEEe-CCCcEEEEECCCCceeeEec
Q 001490 391 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTYSFE 458 (1068)
Q Consensus 391 ~~d~~i~vwd~~~~~~~-----------~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~ 458 (1068)
+..| |.+|....-... .+...-.+| .+|++|.|.+||. .+++++ .|..|.|||..+|..+.-..
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 8777 999987532111 111223455 6899999999999 677766 46689999999998876554
Q ss_pred cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490 459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
...+.+.-+.|+| |+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+..... ...++-...
T Consensus 236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 4567788888977 77799999999999999655444444444445589999999999988765531 222322211
Q ss_pred CC--Cee-----------e------eEEeccccccCCeEEEEEecCCCEEEEEECC--------CeEEEEEcCCCeEEEE
Q 001490 539 SE--GAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT 591 (1068)
Q Consensus 539 ~~--~~~-----------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~ 591 (1068)
.. +.. + ....+...-.+.+.+++|.|.|+++++.-.. +.|.+||.+..-.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 11 100 0 0111111123678899999999999986433 3467788766544443
Q ss_pred Ee-CCCCCCCCceEEEec---CCCEEEEEECCCeEEEEECC
Q 001490 592 ID-AGGGLPENPRICFNK---NGTLLAVIANENRIKILETP 628 (1068)
Q Consensus 592 ~~-~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~ 628 (1068)
.. +.........++|+| ++.+|.++=+.|.+.-|++.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 31 111112245677776 67788888788888777654
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.5e-12 Score=125.77 Aligned_cols=239 Identities=14% Similarity=0.203 Sum_probs=170.3
Q ss_pred ceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccc--cEEEEEEcCCCCcEEEEEEeC-----CCcEEEE
Q 001490 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQISVITCGD-----DKTIKVW 446 (1068)
Q Consensus 374 ~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~--~v~~l~~s~d~~~~~l~s~~~-----d~~i~iw 446 (1068)
...+++|+.|...+++|..+| .+||+++--+... .-..+.+ .+..|-| -.+.+.|+-|+. -..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 455699999999999998887 8999987532211 1111222 2222333 234323443333 2469999
Q ss_pred ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC-CCCceEEecCCC--CcEEEEEEccCCCEEEEE
Q 001490 447 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSC 523 (1068)
Q Consensus 447 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~--~~i~~~~~s~d~~~l~~~ 523 (1068)
|=...+++.++. ...+|.++.+..+ .|++. ..+.|.+|.+. +.+....+.... ....+++-+.+..+|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 977778888775 7788999998652 44443 46789999987 455555544433 234444433344444443
Q ss_pred eeCCCCceeEEEEeCCCCee--eeEEeccccccCCeEEEEEecCCCEEEEEECCCe-EEEEEcCCCeEEEEEeCCCCCCC
Q 001490 524 GTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPE 600 (1068)
Q Consensus 524 ~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~ 600 (1068)
+ -..|.|.+-|+..-+. ...+..|. ..|.+++.+-+|..++++|..|+ |||||..+|+.+..+........
T Consensus 155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 155 G---FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred C---CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 3 2357899999876554 36677777 99999999999999999999998 79999999999999987666677
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 601 NPRICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
|.+++|||+..+|+++++.|++.|+.+...
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999999998864
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-13 Score=157.15 Aligned_cols=366 Identities=12% Similarity=0.067 Sum_probs=225.3
Q ss_pred EECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcc---cce
Q 001490 625 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE---CQS 701 (1068)
Q Consensus 625 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~ 701 (1068)
|+.+ |..+..+..|...+..++.+ ++++.++++|+.||+|++|+........ ...
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ 1091 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSE 1091 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeee
Confidence 4443 45667777777777777776 5777999999999999999966433221 111
Q ss_pred eecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCe
Q 001490 702 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 781 (1068)
Q Consensus 702 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 781 (1068)
.... ....++..+...+.+..+++++.||.|++.+++.... ... .+.+....... ....-+
T Consensus 1092 ltys--~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~-----------~~~~~ri~n~~--~~g~vv 1152 (1431)
T KOG1240|consen 1092 LTYS--PEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKR-----------VATQVRIPNLK--KDGVVV 1152 (1431)
T ss_pred EEEe--ccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccc-----------eeeeeeccccc--CCCceE
Confidence 1111 1467889999999999999999999999998875311 000 01111111111 122233
Q ss_pred eEEEEecC-CC-EEEEEe-CCeEEEEEccCceeEEEec--CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeee
Q 001490 782 PCFALSKN-DA-YLFSAS-GGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 856 (1068)
Q Consensus 782 ~~l~~s~d-g~-~l~~~~-dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 856 (1068)
..-+|... +. .|+.+. .+.|..||+.+.....+++ ...+.|++++.+| .+.++++|+..|.+.+||++-+.++.
T Consensus 1153 ~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1153 SMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred EeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceee
Confidence 33444433 23 556665 4889999998877766654 3457899999999 89999999999999999999988887
Q ss_pred eec-ccccCeEEEEEcCCC---CEEEEEe--CCCcEEEEECCCCceeeeeeeecC----CCcc-------cCCCCceEEE
Q 001490 857 KLE-GHSKRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTP----DGVM-------TLAPSETHIQ 919 (1068)
Q Consensus 857 ~~~-~h~~~V~~l~~spdg---~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~----~~~~-------~~~~~v~~~~ 919 (1068)
.+. .+..+|..++.+|-- ...++++ ..+.|.+|++.+|......-.... .... ..........
T Consensus 1232 sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~ 1311 (1431)
T KOG1240|consen 1232 SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCG 1311 (1431)
T ss_pred cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeee
Confidence 765 355778888777643 4555554 467899999999864442211100 0000 0001122233
Q ss_pred EeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc------EEEEEcCCCcEEEEe
Q 001490 920 FHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT------LSIHEASNLEVQCRI 992 (1068)
Q Consensus 920 ~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~------v~vwd~~~~~~~~~~ 992 (1068)
+..-+.++.+ +.|..|+.||....+...-...+.........++.+ ..++.++.--. ..+=+...+......
T Consensus 1312 ~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~ 1390 (1431)
T KOG1240|consen 1312 VCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKL 1390 (1431)
T ss_pred cccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhccccccc
Confidence 3333445555 789999999998766552222222222323333322 22332221100 011112222234455
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001490 993 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
.++...+...|-++|..++....+ ..+|++++.||.|.+|.
T Consensus 1391 ~~~~~~ps~~H~d~Itdma~~~~~--q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1391 RPGPSDPSTYHHDPITDMATLKSE--QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCCCCCcccccchhhhhhhhccC--ccEEEEecCCCeeeecC
Confidence 566667777778888877766664 57999999999999995
No 221
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.60 E-value=3.3e-09 Score=128.39 Aligned_cols=541 Identities=10% Similarity=0.098 Sum_probs=302.5
Q ss_pred CCcceEEEEECCCCCEEEEEeCCcEEEEE----EccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490 371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446 (1068)
Q Consensus 371 h~~~V~~~~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 446 (1068)
..+.|.++.+-++...++.+..+|.|.+. +..+.. ......-...|.+++||||+. +|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IEIVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eEEEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444432 112334566899999999999 66666667777765
Q ss_pred ECC---------------C--------CceeeEeccCC------------------CcE----EEEeeeecCCccEEEEE
Q 001490 447 DAV---------------T--------GSRTYSFEGHG------------------APV----YSLCPHAKENIHFIFSI 481 (1068)
Q Consensus 447 d~~---------------~--------~~~~~~~~~h~------------------~~v----~~i~~~~~~~~~~l~s~ 481 (1068)
+-. . |+.-..|.|-. +.+ ..+.+++.+||.++++.
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 421 0 01111111110 001 23445567899999988
Q ss_pred Ec---C---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc-ccc
Q 001490 482 SV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQH 554 (1068)
Q Consensus 482 s~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~ 554 (1068)
+. . ..+|+|+-+ +..........+--.+++|-|.|+++++... ......|.+|. ++|-....|.-.. ...
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 75 3 469999755 3333333333334467899999999998875 33356677777 4554444444321 123
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE--EEEeCCCCCCCCceEEEecC-CCEEEEEECCCeEEEEECCCCc
Q 001490 555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESN 631 (1068)
Q Consensus 555 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~ 631 (1068)
..|..+.|++|+..|+..-.|. |.+|...+.... +.+..... ..+..+.|+|. ...|.+.+.+|.+..++..-..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 6799999999999999877655 999999887643 33433322 23456999994 5567777777877776543110
Q ss_pred eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccc---cCCcccceeecCCcc
Q 001490 632 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF---ARPSECQSLLLPSKV 708 (1068)
Q Consensus 632 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~ 708 (1068)
..++.. .|+..-.+..-...++++-.+.. +.|.....+.
T Consensus 383 ---------------~~s~~~------------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~----- 424 (928)
T PF04762_consen 383 ---------------SRSPGS------------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE----- 424 (928)
T ss_pred ---------------EecCCC------------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc-----
Confidence 000000 01111111111112233322221 1122222232
Q ss_pred ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490 709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 788 (1068)
Q Consensus 709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 788 (1068)
-...|.+++|++++..+++...+|.+.+|.++...............+.. . . ... .........+..++|..
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~--~~~~~~~~~~~~~~~~~ 496 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL---D--S-MDI--SDSELPLGSLRQLAWLN 496 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc---c--c-ccc--cccccccccEEEEEEeC
Confidence 23579999999999999999999999999976543221111000000000 0 0 000 00001345678889988
Q ss_pred CCCEEEEEeC----CeEEEEEccCce---eEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee-eeeecc
Q 001490 789 NDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEG 860 (1068)
Q Consensus 789 dg~~l~~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~~~~ 860 (1068)
+...++.... ..+.++++...+ ...........+..+...+ +...++.-..+|.+...+...... +..|..
T Consensus 497 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~ 575 (928)
T PF04762_consen 497 DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ 575 (928)
T ss_pred CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCC
Confidence 8887777653 458888874332 3333333445555565665 444566677899888766554322 223332
Q ss_pred cccCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEE-EEeCCeEEE
Q 001490 861 HSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAI 937 (1068)
Q Consensus 861 h~~~V~~l~~spdg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~d~~i~v 937 (1068)
-...+..+.+.... ..++.-+..|.+++ .+ . .+. ..++++++ .+.+|+ +.....++.
T Consensus 576 ~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~f 635 (928)
T PF04762_consen 576 PCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLKF 635 (928)
T ss_pred CCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEEE
Confidence 22222222232222 14444444554442 21 1 111 13556655 344444 467778888
Q ss_pred EECCC-ceeeeeeccCC----CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEe
Q 001490 938 YEAEE-LTCLKQWFPIS----SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 992 (1068)
Q Consensus 938 wd~~~-~~~~~~~~~~h----~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 992 (1068)
.++.. ..........+ ...+ .--..|..|+++-....=.|..+..|.+-.-.
T Consensus 636 v~L~~~~~~l~~~~~~~~~~~de~~---R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~ 692 (928)
T PF04762_consen 636 VHLNSSVEDLEIPPDSPENSYDERC---RRVERGSRIVTAVPSDTSVVLQMPRGNLETIY 692 (928)
T ss_pred EECcCchhhcccccCcccccccccc---ccCccCCEEEEEeCCCceEEEEcCCCchhhhc
Confidence 88871 11111111111 1122 22346778887765555667788888765443
No 222
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.60 E-value=1.5e-10 Score=118.98 Aligned_cols=529 Identities=13% Similarity=0.119 Sum_probs=280.2
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCCeEEEE----Ec--CcCcEEEEecCCCcceeeeeeeeeeccccccceeeee
Q 001490 294 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLV----GT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 367 (1068)
Q Consensus 294 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~----gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1068)
|.-.+.....+.+..|-+-|+...|+|||+.++.+ |+ ..+.+.+.+.+.|+..+..-
T Consensus 62 We~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTy----------------- 124 (668)
T COG4946 62 WEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITY----------------- 124 (668)
T ss_pred HHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEE-----------------
Confidence 33344444556677788889999999999976552 22 23558888888888765311
Q ss_pred ecCCCcceEE-EEECCCCCEEEEEeCCcE----EEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC-
Q 001490 368 VRDPGVSVNR-VVWSPDGSLLGVAYSKHI----VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK- 441 (1068)
Q Consensus 368 l~~h~~~V~~-~~~spdg~~las~~~d~~----i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~- 441 (1068)
+ | ..-+. .-|+|||+.|++...-.- -.+|.++....-.. .-.-++.+.+.+- ||. ++.|-.--
T Consensus 125 f-G--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e----~LnlGpathiv~~-dg~---ivigRntyd 193 (668)
T COG4946 125 F-G--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE----PLNLGPATHIVIK-DGI---IVIGRNTYD 193 (668)
T ss_pred e-c--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee----eccCCceeeEEEe-CCE---EEEccCccc
Confidence 2 2 22333 459999999988754322 23444433221000 1123445555543 443 33331110
Q ss_pred -----------cEEEEECCC-Ccee---eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC
Q 001490 442 -----------TIKVWDAVT-GSRT---YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL 506 (1068)
Q Consensus 442 -----------~i~iwd~~~-~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 506 (1068)
.=++|--.. |+.- ..+.+|-....-+ .++..+....+|.=.+|..+-...-..-...-.
T Consensus 194 LP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV------~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt 267 (668)
T COG4946 194 LPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV------GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT 267 (668)
T ss_pred CcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE------cceEEEEecccCccceEEeccCCchhhhcCCch
Confidence 123443222 2222 2233332211111 112233334444434443322111111000111
Q ss_pred cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc---cC-----CeEEEE-Eec-CCCEEEEEECCC
Q 001490 507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---HN-----SVSVVH-FDT-AKDQILAAGDDH 576 (1068)
Q Consensus 507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~~-----~v~~~~-~~~-~~~~l~~~s~dg 576 (1068)
...+-..+.||+.++... .+-|+++|..+.+..+.--+.... .. +..-+. |++ +|++++..| .|
T Consensus 268 dYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RG 341 (668)
T COG4946 268 DYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RG 341 (668)
T ss_pred hccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cC
Confidence 223334567999988754 234999999876553332221100 00 011111 222 466776666 46
Q ss_pred eEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCC-eEEEEECCCCceeeeccccccceeeeEEcCCcccc
Q 001490 577 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 655 (1068)
Q Consensus 577 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 655 (1068)
...|.+...+-.++.-. ...|.-..+..+++-++.|..|| .+-|+|..++..-....
T Consensus 342 kaFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------------------ 399 (668)
T COG4946 342 KAFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------------------ 399 (668)
T ss_pred cEEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC------------------
Confidence 77777766665554322 23367777777888889999988 89999988763222111
Q ss_pred ccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEE
Q 001490 656 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 735 (1068)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 735 (1068)
.-+.|.++..+++|+.++++.....+.
T Consensus 400 -----------------------------------------------------~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 400 -----------------------------------------------------DLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred -----------------------------------------------------CccceEEEEEcCCCcEEEEEcCceEEE
Confidence 335688899999999888887777777
Q ss_pred EEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-C----CeEEEEEccCce
Q 001490 736 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFK 810 (1068)
Q Consensus 736 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-d----g~i~iwd~~~~~ 810 (1068)
+.|++.. ...+.- +....-|+.++++|+++++|.+- + ..|+++|+.+++
T Consensus 427 vididng----------------------nv~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 427 VIDIDNG----------------------NVRLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEecCC----------------------CeeEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 7666543 211111 12567799999999999999986 3 459999999888
Q ss_pred eEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeee--eecccccCeEEEE----EcCCCCEEEE-EeCC
Q 001490 811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGLV----FSDALNILVS-SGGD 883 (1068)
Q Consensus 811 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~--~~~~h~~~V~~l~----~spdg~~l~s-~s~d 883 (1068)
...... +.+.-.+-||.| |+++|..-+.- --|..+.+.+. .+..|+.+-..+- .||-.+..-. -+.+
T Consensus 481 iy~vTT-~ta~DfsPaFD~-d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea 554 (668)
T COG4946 481 IYDVTT-PTAYDFSPAFDP-DGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEA 554 (668)
T ss_pred EEEecC-CcccccCcccCC-CCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccc
Confidence 765443 444556788999 88888765431 11111111111 1111222211110 1222222111 1233
Q ss_pred CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEE-----------E--E--eCCeEEEEECCCceeeee
Q 001490 884 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-----------L--V--HETHLAIYEAEELTCLKQ 948 (1068)
Q Consensus 884 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-----------~--~--~d~~i~vwd~~~~~~~~~ 948 (1068)
+.+-+=+++.. ..+++..++. -.+++=-.+|+.+. . + ..|.+.+||+++.+.-..
T Consensus 555 ~e~dle~ie~r----~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~ 624 (668)
T COG4946 555 GEVDLEGIEDR----VEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY 624 (668)
T ss_pred cceehhhhccc----ccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH
Confidence 33322222210 1111211111 11222222332221 1 1 246788999887654321
Q ss_pred eccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001490 949 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 985 (1068)
Q Consensus 949 ~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~ 985 (1068)
...++++..|+||+.+.. -.||.+++++++.
T Consensus 625 -----k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 625 -----KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred -----hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 357889999999999988 6899999999986
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.5e-13 Score=131.58 Aligned_cols=259 Identities=12% Similarity=0.119 Sum_probs=165.5
Q ss_pred ccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001490 711 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 790 (1068)
Q Consensus 711 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 790 (1068)
..|.+++|-|.+...++.+..+.|.+|..+...... -.++.. +..+... +..++| ..|+++++.+||
T Consensus 141 rnvtclawRPlsaselavgCr~gIciW~~s~tln~~-------r~~~~~---s~~~~qv--l~~pgh-~pVtsmqwn~dg 207 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN-------RNIRMM---STHHLQV--LQDPGH-NPVTSMQWNEDG 207 (445)
T ss_pred cceeEEEeccCCcceeeeeecceeEEEEcCcccccc-------cccccc---cccchhh--eeCCCC-ceeeEEEEcCCC
Confidence 457888888877767777777788899865432100 001100 1111111 223345 789999999999
Q ss_pred CEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEE
Q 001490 791 AYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868 (1068)
Q Consensus 791 ~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l 868 (1068)
..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|.+++-|+..++|+.....-.....--.+.|...
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqta 286 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTA 286 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeee
Confidence 9999998 57899999999887766655667899999999 89999999999999999554332222233345589999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcee----------eeeee------ecCCCcccCCCCceEEEEeeCCCEEEEEeC
Q 001490 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQ----------TCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVHE 932 (1068)
Q Consensus 869 ~~spdg~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~------~~~~~~~~~~~~v~~~~~spdg~~la~~~d 932 (1068)
+|+|+|++|+.+.... -++|.+.-.+.. ....+ ....+.....++..+++|.|.|.+||+...
T Consensus 287 cWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 287 CWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 9999999877655433 345554321100 00011 111111112257899999999999999533
Q ss_pred C---------eEEEEECCCceeeeeeccCC--CcCEEEEEEec---CCCEEEEEECCCcEEEEEcC
Q 001490 933 T---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 933 ~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~t~~~dg~v~vwd~~ 984 (1068)
+ .|.+||....-.+.-.+.+- ......++|.| +|++|..+=+.|.+.-|++.
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2 36667766443333222121 23355677776 67777777777877776654
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=9.3e-13 Score=148.53 Aligned_cols=238 Identities=10% Similarity=0.111 Sum_probs=157.8
Q ss_pred CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC---CcEEEEEEccCCCcccc
Q 001490 333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 409 (1068)
Q Consensus 333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 409 (1068)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+||+.+|+..
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-- 236 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-- 236 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--
Confidence 368888887654332 3346678999999999999997643 457999999887532
Q ss_pred eEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC-Cc
Q 001490 410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 486 (1068)
Q Consensus 410 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~ 486 (1068)
.+....+.+..++|+|||+. ++++.+.++ .|++||+.+++... +..+...+....|+| ||+.|+..+.+ +.
T Consensus 237 --~l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~ 310 (429)
T PRK03629 237 --QVASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP--DSQNLAYTSDQAGR 310 (429)
T ss_pred --EccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC--CCCEEEEEeCCCCC
Confidence 22233344557899999995 233334444 59999998887644 444445566777765 77788776654 45
Q ss_pred EEEE--eCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490 487 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 487 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
..+| |+.++.. ..+...........|+|||++++..+..+ +...|++||+.+++.. .+... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeE-EeCCC----CCCCCceECC
Confidence 4555 5555433 23333344456789999999998876432 3567999999888654 33321 2234678999
Q ss_pred CCCEEEEEECCCe---EEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490 565 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 608 (1068)
Q Consensus 565 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 608 (1068)
||++|+.++.++. ++++++ +|.....+..+. ..+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 9999999887764 677777 455555555432 3467788886
No 225
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.5e-14 Score=148.67 Aligned_cols=246 Identities=13% Similarity=0.189 Sum_probs=170.9
Q ss_pred ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
...+.|.||++-|.|++|+.||. +|++||.|-.+.|||....+.++. +-+||.+.|.++.|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKF 101 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKF 101 (758)
T ss_pred chhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEee
Confidence 45567899999999999999998 889999999999999987776654 25689999999999
Q ss_pred CC--CCCEEEEEeCCcEEEEEEccCCCc-------ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490 381 SP--DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 451 (1068)
Q Consensus 381 sp--dg~~las~~~d~~i~vwd~~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 451 (1068)
-| +.+.+++|..|..|+++|+...+. ..+...+..|...|..++-.|++.. .+.+++.||+|+-+|++..
T Consensus 102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREP 180 (758)
T ss_pred eccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCC
Confidence 99 578899999999999999985221 2222345679999999999999965 8999999999999999753
Q ss_pred ce-e---------eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE-----ecCCCCcEEEEE-Ecc
Q 001490 452 SR-T---------YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSA 515 (1068)
Q Consensus 452 ~~-~---------~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~-~s~ 515 (1068)
.. . ..+...--...++.++|. +..+|+.|+.|-..++||.+....... .........|+. |+|
T Consensus 181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p 259 (758)
T KOG1310|consen 181 HVCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP 259 (758)
T ss_pred ccCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence 21 1 111111123456777776 446999999999999999532211110 001111122222 122
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001490 516 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592 (1068)
Q Consensus 516 d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 592 (1068)
.+- .. ..|..... . ..++-+.|+|+|..++..-....|+++|+..++....+
T Consensus 260 ~hl----kn--------------~~gn~~~~----~---~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 260 GHL----KN--------------SQGNLDRY----I---TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccc----cC--------------cccccccc----e---eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 211 00 01110000 0 23667899999998888777778999999987765544
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.4e-12 Score=148.39 Aligned_cols=237 Identities=13% Similarity=0.073 Sum_probs=162.0
Q ss_pred CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC---CcEEEEEEccCCCcccc
Q 001490 333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 409 (1068)
Q Consensus 333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 409 (1068)
..|.+||...+.... +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 378888876544322 5567889999999999999998764 468999999987632
Q ss_pred eEEEccccccEEEEEEcCCCCcEEEEEEeCCCc--EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CC-
Q 001490 410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 485 (1068)
Q Consensus 410 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg- 485 (1068)
.+..+.+.+.+.+|+|||+. ++++.+.++. |++||+.++.. ..+..+........|+| ||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCC
Confidence 34556677889999999995 3445555554 77889887765 45665666666677755 7777777664 33
Q ss_pred -cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490 486 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 486 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
.|.++|+....... +......+....|+|||+.|+..... .+...|.+||+.++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 57777876654433 32234456678899999999987643 2356799999866543 33322 2 2466789999
Q ss_pred CCCEEEEEECC------CeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490 565 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 608 (1068)
Q Consensus 565 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 608 (1068)
||+.|+..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998875542 3688888876554 3444222 256667776
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.9e-12 Score=126.58 Aligned_cols=242 Identities=12% Similarity=0.151 Sum_probs=169.2
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCC--CCeEEEEEeCCCCCEEE-EEECC------CeEEEEEcC
Q 001490 780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIA-IGMDD------STILIYNAR 850 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la-sg~~d------g~v~iwd~~ 850 (1068)
....++|..|...+++|.+...+||+.+..+.......+. -.+..+-|-. ++|| +|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEecc
Confidence 4456999999999999999999999998654432222222 2334444432 3444 44433 489999966
Q ss_pred CceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-
Q 001490 851 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 929 (1068)
Q Consensus 851 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~- 929 (1068)
..+++.++. ...+|.++.+++| .+|+.- .+.|+||.....-. ....+.+..... ...+++=...-.+||.
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-~l~~~et~~NPk----GlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-LLHVIETRSNPK----GLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-heeeeecccCCC----ceEeecCCCCceEEEcC
Confidence 667777776 6788999999876 455443 56699999985321 112222222111 1222222223344555
Q ss_pred E-eCCeEEEEECCCcee-eeeeccCCCcCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCcEEEEeccccccCCCCccCc
Q 001490 930 V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLH 1006 (1068)
Q Consensus 930 ~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1068)
| .-|.|+|-|+...+. .......|...|.+++.+-+|.++||+|..|+ |||||..+|+.+.+++.+. ..
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~--------d~ 226 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV--------DR 226 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC--------ch
Confidence 4 458899999987665 33457789999999999999999999999998 8999999999999998443 22
Q ss_pred ccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 001490 1007 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1042 (1068)
Q Consensus 1007 ~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~ 1042 (1068)
....+++|+| +..+|+++++.|+|++|.+.+....
T Consensus 227 A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 227 ADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred heEEEEEeCC-CccEEEEEcCCCeEEEEEeecCCCC
Confidence 2345899999 7899999999999999999775533
No 228
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=4.4e-15 Score=162.11 Aligned_cols=350 Identities=18% Similarity=0.182 Sum_probs=222.8
Q ss_pred cccCCCcch-hHHHHHHHhhcccchhcccCCCCCCCCCcceeecccCCCCCCccCCCCCCCCCCCCCCCCCCcccccCCc
Q 001490 137 KLKFPSIKR-QRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSM 215 (1068)
Q Consensus 137 ~~~~~~~p~-~rL~~ll~qa~~~Q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s~ 215 (1068)
+.+.|..|+ .-|..|+.|++++|+.+|+.|.+..++.|||..|.|+. |.+..+++-+...+.
T Consensus 1003 gq~~~~~p~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl-- 1065 (1516)
T KOG1832|consen 1003 GQMTPANPERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRL-- 1065 (1516)
T ss_pred ccCCCcCCCCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcc--
Confidence 445555553 35999999999999999999998888889999999986 555555431110000
Q ss_pred ccccccccccccCCCCCCccccccCCCCCCCCcCCccccccCCCCceeeecCc--cCCCCCccCCCCccccccccccCCC
Q 001490 216 LTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV--SLKNIPDYSPKSSLKKEMFQSFGET 293 (1068)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~p~~--~~~s~~~fsP~~s~~~~~~~~~~~~ 293 (1068)
..+ ..++.. .|+. .-..+.+|..
T Consensus 1066 --~~r------------------------------------------el~~~y~gV~g~-------~~dr~~IFSR---- 1090 (1516)
T KOG1832|consen 1066 --GTR------------------------------------------ELQSFYSGVHGN-------RRDRQFIFSR---- 1090 (1516)
T ss_pred --cch------------------------------------------hhcCcccccccC-------cccchhhHhh----
Confidence 000 000000 0010 1111122222
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCc
Q 001490 294 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 373 (1068)
Q Consensus 294 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 373 (1068)
....++++.|+..-+|++||-+.+ .|++|+..|.|+++++.+|..... ...|..
T Consensus 1091 ------Fr~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~S 1144 (1516)
T KOG1832|consen 1091 ------FRSWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQS 1144 (1516)
T ss_pred ------cccchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------cccccc
Confidence 123466788999999999999987 679999999999999999998876 556999
Q ss_pred ceEEEEECCCCCEEEEEeCC--cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490 374 SVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 451 (1068)
Q Consensus 374 ~V~~~~~spdg~~las~~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 451 (1068)
.|+.+.-|-||..+++.+.- ....+|+..+-. ...+.+. .-.++.|+..... -+.|..-....+||++|+
T Consensus 1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTC 1216 (1516)
T ss_pred ccccccccCCcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH--HHhcccccceEEEecccC
Confidence 99999999999988776443 357899987632 2111222 3457889877553 233333456899999999
Q ss_pred ceeeEe-cc---CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490 452 SRTYSF-EG---HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 452 ~~~~~~-~~---h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 527 (1068)
..+.++ .+ ....-+...|+|. ..+++ .|| .+||.+..+.+..+..... ...=.|+|.|..++..+
T Consensus 1217 ~~l~tylt~~~~~~y~~n~a~FsP~--D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPC--DTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS--- 1285 (1516)
T ss_pred cHHHHhcCcchhhhhhccccccCCC--cceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec---
Confidence 887663 22 1112244456553 33443 233 4699888766665544331 11236899999998864
Q ss_pred CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE--CC---------------CeEEEEEcCCCeEEE
Q 001490 528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLT 590 (1068)
Q Consensus 528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~d---------------g~i~iwd~~~~~~~~ 590 (1068)
.|||+++.+.++...... -..+.|+..|+.++..- .| ...+-+|......+.
T Consensus 1286 ------EIwD~RTF~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~ia 1354 (1516)
T KOG1832|consen 1286 ------EIWDMRTFKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIA 1354 (1516)
T ss_pred ------hhhhhHHHHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccce
Confidence 579999988877665533 46678888887766542 00 123445555555666
Q ss_pred EEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490 591 TIDAGGGLPENPRICFNKNGTLLAVIA 617 (1068)
Q Consensus 591 ~~~~~~~~~~v~~v~~s~~~~~l~~~~ 617 (1068)
++.... .+..++-+|...++.+..
T Consensus 1355 Ti~v~R---~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1355 TIPVDR---CLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred eeeccc---chhhhhcCCccceEEEEe
Confidence 665442 255666666666666543
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=6e-13 Score=150.03 Aligned_cols=233 Identities=14% Similarity=0.098 Sum_probs=154.2
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCCeEEEEEc--CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCc
Q 001490 296 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 373 (1068)
Q Consensus 296 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 373 (1068)
.+......+.+..+.+.+...+|||||+.++.+.. .+..|.+||+.+|+.... ....+
T Consensus 184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------~~~~~ 243 (429)
T PRK03629 184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------ASFPR 243 (429)
T ss_pred EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------cCCCC
Confidence 33344445566667778999999999997655432 235799999988865431 11223
Q ss_pred ceEEEEECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC-CC--cEEEEE
Q 001490 374 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK--TIKVWD 447 (1068)
Q Consensus 374 ~V~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~--~i~iwd 447 (1068)
.+..++|||||++|+.. +.+| .|++||+++++.. .+..+...+....|+|||+ .|+..+. ++ .|+++|
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEE
Confidence 34568999999999876 3344 5999999887533 3444555678999999999 4544443 34 455557
Q ss_pred CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 524 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 524 (1068)
+.++.. ..+..+........|+| ||++|+..+.+ ..|.+||+.++...... . ........|+|||+.|+..+
T Consensus 318 ~~~g~~-~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~-~~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 318 INGGAP-QRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-D-TFLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred CCCCCe-EEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEEeC-C-CCCCCCceECCCCCEEEEEE
Confidence 776654 34443444455566655 77788776543 35888998877644322 2 12334678999999999888
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490 525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
.++. ...++++++ +|.....+.++. +.+...+|+|
T Consensus 393 ~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred cCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence 6443 556888887 455556666655 6777788876
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=9.2e-13 Score=138.22 Aligned_cols=284 Identities=14% Similarity=0.194 Sum_probs=207.2
Q ss_pred cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490 308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 387 (1068)
Q Consensus 308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l 387 (1068)
+|...-+.+..||||++++|+|..--.|++||+..-.+...+.+ ....|.-.-+|.|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 46668889999999999999999999999999987655433211 23456666677777777
Q ss_pred EEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001490 388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 467 (1068)
Q Consensus 388 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 467 (1068)
+.-..|.+|.+-.-.+ .... ..+. ..-.+++++.-.-. |+.++....|+-.|++.|+.+..+....+.++++
T Consensus 110 v~L~~DR~IefHak~G-~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKYG-RHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhcC-eeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 7777888877644322 1110 0111 12234555544442 4444445679999999999999998888999999
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC------CC-----cEEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW 536 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 536 (1068)
.+++. ..+|++|+.+|.|..||.+.......+... .+ .|+++.|+.||-.+++|.. .|.+++|
T Consensus 182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 88664 358999999999999999887765544322 22 4899999999999999886 6679999
Q ss_pred eCCCCeeeeEEeccccccCCeEEEEEecC--CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490 537 NESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614 (1068)
Q Consensus 537 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 614 (1068)
|+++.+++..-.. . ..-+|..+.|.+. ++.+++ .+...++|||-.+|+....+... ..++.+|+-|++.+++
T Consensus 256 DLRa~~pl~~kdh-~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 256 DLRASKPLLVKDH-G-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF 329 (703)
T ss_pred EcccCCceeeccc-C-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence 9999887654332 2 2367888999766 333443 45578999999999999888654 3489999999999999
Q ss_pred EEECCCeEEEEECCCC
Q 001490 615 VIANENRIKILETPES 630 (1068)
Q Consensus 615 ~~~~dg~i~iwd~~~~ 630 (1068)
++-.++.+..|=+...
T Consensus 330 ~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 330 TANESSKMHTYYIPSL 345 (703)
T ss_pred EecCCCcceeEEcccc
Confidence 9999988887776643
No 231
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.55 E-value=7e-13 Score=129.49 Aligned_cols=252 Identities=13% Similarity=0.125 Sum_probs=183.9
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEccC---ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-
Q 001490 777 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMT---FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS- 851 (1068)
Q Consensus 777 ~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~- 851 (1068)
...+|+|.||++|+..+|++.. ..|.||.... .+..+++..|...|+.+.|+| ....|++++.|..-++|...+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 3568999999999999999985 6799998864 457888999999999999999 888999999999999999843
Q ss_pred c--eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE
Q 001490 852 S--EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 929 (1068)
Q Consensus 852 ~--~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 929 (1068)
+ ++...+..|+...+++.|+|.++.+|+||..+.|.||-++..+ ...+-+..... +...|.+++|.|++-+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWVsKhikkP--irStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWVSKHIKKP--IRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceehhhhhCCc--cccceeeeeccCCcceecc
Confidence 3 4555666689999999999999999999999999999887632 11111111111 1136999999999999999
Q ss_pred -EeCCeEEEEECC-----C-------------ceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEE
Q 001490 930 -VHETHLAIYEAE-----E-------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 990 (1068)
Q Consensus 930 -~~d~~i~vwd~~-----~-------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~ 990 (1068)
+.|+..+|+..- . |+...+ .....+.+..+.|+|+|..|+-.+.|+++.+=|........
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E-~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE-ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh-hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 679988888642 1 111222 11346889999999999999999999999999988876322
Q ss_pred EeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccC
Q 001490 991 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1046 (1068)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 1046 (1068)
.......+| -+++.|-. ...+++++.|..=.++...+++ .|...
T Consensus 243 ~~~~~~~lP---------~ls~~~is--e~~vv~ag~~c~P~lf~~~~~~-~l~~~ 286 (361)
T KOG1523|consen 243 QSVATAQLP---------LLSVSWIS--ENSVVAAGYDCGPVLFVTDEEG-GLSFA 286 (361)
T ss_pred cchhhccCC---------ceeeEeec--CCceeecCCCCCceEEEecccc-ceeee
Confidence 222111122 23555553 3556666666544555554443 44433
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.3e-11 Score=132.48 Aligned_cols=508 Identities=12% Similarity=0.147 Sum_probs=299.0
Q ss_pred CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCc------------ccceEEEccccccEEEEEEcCCCCcEEEEEEe
Q 001490 371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 438 (1068)
Q Consensus 371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~ 438 (1068)
......|++|+....|+|+|+.||.++|-.+.+... +....++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 345788999999999999999999999998876432 111235789999999999999888 688999
Q ss_pred CCCcEEEEECCCCceeeEe--ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC
Q 001490 439 DDKTIKVWDAVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 516 (1068)
Q Consensus 439 ~d~~i~iwd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d 516 (1068)
.+|.|.+|-+-.|.-...+ ......|.+++|.. ||..+...-.||.|.+=.++..+ +.--.........+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 9999999998777644332 23456678888754 88899999999988765544322 1111112223456889999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCe-------eeeEEec-cccccCCeEEEEEe--------cCCCEEEEEECCCeEEE
Q 001490 517 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 580 (1068)
Q Consensus 517 ~~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~-~~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i 580 (1068)
.+.++.+-. .+.+.++|....- +.....+ .......|..+.|. |+...++.+..+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988877654 4458888865321 1011111 11011235555553 57788999999999888
Q ss_pred EEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCC---------eEEEEECCCCceeeeccccccceeeeEEcCC
Q 001490 581 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 651 (1068)
Q Consensus 581 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 651 (1068)
-.-.+...-..+... -.+....|+++|..|++++.+. .|.++. .-+..+.+++.....
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~--------- 310 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSC--------- 310 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCce---------
Confidence 765443332333222 2367789999999999988753 222221 112233333333333
Q ss_pred ccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecC
Q 001490 652 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 731 (1068)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 731 (1068)
|+++.|-..|-+++. .-|
T Consensus 311 -------------------------------------------------------------It~lsWEg~gLriA~-Avd 328 (1189)
T KOG2041|consen 311 -------------------------------------------------------------ITGLSWEGTGLRIAI-AVD 328 (1189)
T ss_pred -------------------------------------------------------------eeeeEEcCCceEEEE-Eec
Confidence 334444333332221 122
Q ss_pred ccEEEEeccCCcc----------CCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001490 732 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 800 (1068)
Q Consensus 732 g~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~ 800 (1068)
+.+.+=++..+-. ...+.......+..||..+.+.... .-....+++|+.+--.|+.-. ++.
T Consensus 329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence 2222222111100 0001111112355666666553322 223455777777666665554 455
Q ss_pred EEEEEc-cCceeEEEec-----C--CC---CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee---------------
Q 001490 801 ISLYIV-MTFKTILTIM-----P--PS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------------- 854 (1068)
Q Consensus 801 i~iwd~-~~~~~~~~~~-----~--~~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------------- 854 (1068)
+.-++. ++...+..+. + -. ..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~ 479 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF 479 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence 544421 2211111110 0 01 1122222222 56677777766 478886532111
Q ss_pred -----------------eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceE
Q 001490 855 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 917 (1068)
Q Consensus 855 -----------------~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 917 (1068)
..++.|..++|.+++.| .++|..+-..|.|.-+.+.+..... ...- ...+..
T Consensus 480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n-----~y~~----n~~~y~ 548 (1189)
T KOG2041|consen 480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN-----SYPV----NPSIYS 548 (1189)
T ss_pred cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee-----cccc----Cchhee
Confidence 13445667788888886 5788899999999999998844222 2111 125888
Q ss_pred EEEeeCCCEEEE-EeCCeEEEEECC---CceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490 918 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982 (1068)
Q Consensus 918 ~~~spdg~~la~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd 982 (1068)
++..-+..++|+ ---|.+.+.|+. +|..+.-+.......|+.+.|..|...|++--....++|++
T Consensus 549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr 617 (1189)
T KOG2041|consen 549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR 617 (1189)
T ss_pred EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence 999988888887 455667777665 45555544555577889999998887666544444455554
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=3.3e-14 Score=145.15 Aligned_cols=272 Identities=18% Similarity=0.182 Sum_probs=210.7
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 391 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~ 391 (1068)
....+.++.+|++| +.|+.-|.|..+|+.++++..+.++ ...|..+.|-.+.+++|++
T Consensus 131 GPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei~v--------------------~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEINV--------------------METVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccEE-EecCCccceeeeecccceeeeeeeh--------------------hhhhhhhhhhcchHHHHhh-
Confidence 66789999999966 5556669999999999998765332 3579999999999999988
Q ss_pred CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeee
Q 001490 392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 471 (1068)
Q Consensus 392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 471 (1068)
....++|||-..-+ +.+ +..| ..|..+.|.|--- +|++++..|.++--|+.+|+.+..+..-.+.+..++-+|
T Consensus 189 QK~y~yvYD~~GtE-lHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTE-LHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCCcE-Eee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 56679999976532 332 3333 5689999999866 899999999999999999999999988888888888766
Q ss_pred cCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001490 472 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 551 (1068)
Q Consensus 472 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 551 (1068)
-+ ..+-.|...|+|.+|.....+.+..+..|.++|.++++.++|+|+++.+. |..+.|||+++-..+.++.. .
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence 43 47888999999999999999999999999999999999999999999987 66799999998877666665 2
Q ss_pred cccCCeEEEEEecCCCEEEEEECCCeEEEEE-cCCCe--EEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001490 552 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 624 (1068)
Q Consensus 552 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 624 (1068)
.....+++|..| +++.+....+.||. .-.+. .-...-.|.-...|..+.|.|-...|-+|...|.-.+
T Consensus 335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 456778888665 55556666799994 33322 1111112222236888999997777777766654444
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=7.1e-13 Score=150.40 Aligned_cols=232 Identities=15% Similarity=0.146 Sum_probs=153.0
Q ss_pred CCccceeeecccCCCCceEEEEcCCCCeEEEEEcC--cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490 297 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 374 (1068)
Q Consensus 297 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 374 (1068)
+......+.+..|...+.+.+|||||++++.+... +..|.+||+.+++... +....+.
T Consensus 190 D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~ 249 (433)
T PRK04922 190 DSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGI 249 (433)
T ss_pred CCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCC
Confidence 33445556677777789999999999966544432 2469999998887543 2223344
Q ss_pred eEEEEECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-CCCc--EEEEEC
Q 001490 375 VNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWDA 448 (1068)
Q Consensus 375 V~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~--i~iwd~ 448 (1068)
..+++|||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||++ ++..+ .++. |+++|+
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEEC
Confidence 5678999999988754 4444 6999999987632 34455555678899999994 54444 4444 777787
Q ss_pred CCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCC---cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEee
Q 001490 449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 525 (1068)
Q Consensus 449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 525 (1068)
.+++.. .+..+.......+|++ ||+.|+..+.++ .|.+||+.++.... +. +........|+|||++++..+.
T Consensus 324 ~~g~~~-~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 324 SGGSAE-RLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CCCCeE-EeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEe
Confidence 777643 3332333344566755 777887765443 58999987766543 22 2223456799999999988775
Q ss_pred CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490 526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 526 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
. .+...|++++... .....+..+. +.+...+|+|
T Consensus 399 ~-~g~~~L~~~~~~g-~~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 399 E-GGRGVLAAVSTDG-RVRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred c-CCceEEEEEECCC-CceEEcccCC---CCCCCCccCC
Confidence 4 3467799999854 3444454433 4566667765
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=3.6e-14 Score=144.92 Aligned_cols=269 Identities=16% Similarity=0.214 Sum_probs=199.3
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceee
Q 001490 601 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 680 (1068)
Q Consensus 601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 680 (1068)
...+.++.+|++|+.|+..|.+..+|..+++....+..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v------------------------------------------ 169 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV------------------------------------------ 169 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh------------------------------------------
Confidence 46789999999999999999999999998876654431
Q ss_pred cccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccC
Q 001490 681 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 760 (1068)
Q Consensus 681 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 760 (1068)
...|.++.|-.+.+ +++.+....++|||-.
T Consensus 170 -----------------------------~Etv~Dv~~LHneq-~~AVAQK~y~yvYD~~-------------------- 199 (545)
T KOG1272|consen 170 -----------------------------METVRDVTFLHNEQ-FFAVAQKKYVYVYDNN-------------------- 199 (545)
T ss_pred -----------------------------hhhhhhhhhhcchH-HHHhhhhceEEEecCC--------------------
Confidence 12334444444444 3344445566666522
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEE
Q 001490 761 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 839 (1068)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 839 (1068)
|..+.... ....|..+.|-|.--+|+++++ |.++--|+.+|+.+..+....+.+..++-.| -+.++-+|.
T Consensus 200 ---GtElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~Gh 270 (545)
T KOG1272|consen 200 ---GTELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGH 270 (545)
T ss_pred ---CcEEeehh-----hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcC
Confidence 22122211 3567888999999888888884 8999999999999999999999999999999 788999999
Q ss_pred CCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEE
Q 001490 840 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 919 (1068)
Q Consensus 840 ~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 919 (1068)
..|+|.+|...+.+++..+..|.++|.+|++.++|+++||+|.|..++|||+..-.... ..... .....++
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~-----t~~tp----~~a~~ls 341 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH-----TYRTP----HPASNLS 341 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc-----eeecC----CCccccc
Confidence 99999999999999998899999999999999999999999999999999999844211 11111 2466788
Q ss_pred EeeCCCEEEEEeCCeEEEEECC-Cce-eeeeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEE
Q 001490 920 FHKDQTRFLLVHETHLAIYEAE-ELT-CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSI 980 (1068)
Q Consensus 920 ~spdg~~la~~~d~~i~vwd~~-~~~-~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~v 980 (1068)
||..|- ||.+....+.||.=. .+. .....+..| .+.|..+.|.|-...|-.|..-|.-.+
T Consensus 342 ~Sqkgl-LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 342 LSQKGL-LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred cccccc-eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 887774 666777789999532 222 222223334 569999999997776666655554433
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.5e-12 Score=147.76 Aligned_cols=238 Identities=15% Similarity=0.113 Sum_probs=158.3
Q ss_pred CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccc
Q 001490 333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ 409 (1068)
Q Consensus 333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~ 409 (1068)
.+|.+||...+.... +..+...+.+.+|||||++|+..+.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986543321 44567789999999999999988643 47999999887632
Q ss_pred eEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CCc
Q 001490 410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK 486 (1068)
Q Consensus 410 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~ 486 (1068)
.+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|++ ||+.|+..+. +|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCC
Confidence 23344455668899999995 334455555 599999988875 44555655556667755 7777777664 455
Q ss_pred --EEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490 487 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 487 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
|.++++.+++... +..........+|+|||++++..... .+...|.+||+.+++.. .+.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence 5566665554332 22233344568999999999887642 23557999999888754 3322 1 2334568999
Q ss_pred CCCEEEEEECC---CeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490 565 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 608 (1068)
Q Consensus 565 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 608 (1068)
||++++..+.+ +.|++++... .....+..+. ..+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 99998876643 4688888854 4445454322 2356667776
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.5e-11 Score=129.60 Aligned_cols=286 Identities=12% Similarity=0.129 Sum_probs=187.9
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE-
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 390 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~- 390 (1068)
.....++|++|+ ++|.+.. ..|+|++..++..+... ....+.++.|||-|.||.+=
T Consensus 36 ~~~v~~~S~~G~-lfA~~~~-~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~e 92 (566)
T KOG2315|consen 36 PCNVFAYSNNGR-LFAYSDN-QVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTWE 92 (566)
T ss_pred cceeEEEcCCCc-EEEEEcC-CeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccccc
Confidence 467889999998 6676654 88999999988644321 12278899999999999763
Q ss_pred ----eCC-----cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC
Q 001490 391 ----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 461 (1068)
Q Consensus 391 ----~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 461 (1068)
..+ ..+.+|+++++.... .+......-++..|+.|.. ++.--..+.+.+|++..-+.+. -+-|.
T Consensus 93 ~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~~ 165 (566)
T KOG2315|consen 93 PWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLSV 165 (566)
T ss_pred ccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeeec
Confidence 122 347899999954322 1222222226899999986 3333345679999987643332 22367
Q ss_pred CcEEEEeeeecCCccEEEE-----EEcCCcEEEEeCCCCCceEEec---CCCCcEEEEEEccCCCEEEE-Eee--CC---
Q 001490 462 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFS-CGT--SK--- 527 (1068)
Q Consensus 462 ~~v~~i~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~-~~~--~~--- 527 (1068)
..|..+.++|.+....+++ .+.-+.|++|.+.....-.... .....-..+.|++-|.-|++ .+. ++
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 7888888888765556655 3455679999776222211110 01112245778877764432 222 11
Q ss_pred --CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE--EECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490 528 --EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 603 (1068)
Q Consensus 528 --~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 603 (1068)
-|+..+++.++......-.+.. .++|.++.|+|+++.+++ |-.-..+.|+|++ +.++..+.. .+-++
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~ 316 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNT 316 (566)
T ss_pred cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccc
Confidence 2466788888874333333322 489999999999987766 5578889999985 566666542 23578
Q ss_pred EEEecCCCEEEEEECC---CeEEEEECCCCceeeec
Q 001490 604 ICFNKNGTLLAVIANE---NRIKILETPESNSVDAA 636 (1068)
Q Consensus 604 v~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~ 636 (1068)
+-|+|.|++++.++-+ |.|.+||+.+.+.+..+
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 9999999999988764 88999999876655444
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.1e-12 Score=148.25 Aligned_cols=232 Identities=19% Similarity=0.186 Sum_probs=149.8
Q ss_pred ccceeeecccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490 299 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 376 (1068)
Q Consensus 299 p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 376 (1068)
.....+.+..+.+.+.+.+|||||+.++++...+ ..|.+||+.+|+... +....+.+.
T Consensus 184 dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~ 243 (427)
T PRK02889 184 DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNS 243 (427)
T ss_pred CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCcc
Confidence 3445566677778999999999998665544333 359999999887543 222334566
Q ss_pred EEEECCCCCEEEE-EeCCcEEEEEE--ccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE--ECCCC
Q 001490 377 RVVWSPDGSLLGV-AYSKHIVQLYA--YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVTG 451 (1068)
Q Consensus 377 ~~~~spdg~~las-~~~d~~i~vwd--~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw--d~~~~ 451 (1068)
+.+|||||+.|+. .+.++...||. +.++. .+ .+..+...+....|+|||+. ++++...++...|| ++.++
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCC
Confidence 8999999999875 46677655554 54443 22 34455556677899999995 23333344555666 44455
Q ss_pred ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCC---cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490 452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 528 (1068)
Q Consensus 452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 528 (1068)
... .+..+........|+| ||++|+..+.++ .|.+||+.++....... ........|+|||+.|+.....+
T Consensus 319 ~~~-~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~- 392 (427)
T PRK02889 319 AAQ-RVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG- 392 (427)
T ss_pred ceE-EEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC-
Confidence 432 2222222333455654 788888777654 59999998776543322 22346789999999999887643
Q ss_pred CceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC
Q 001490 529 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 565 (1068)
Q Consensus 529 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 565 (1068)
+...+++.+. ++.....+..+. +.+...+|+|-
T Consensus 393 g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 393 GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 4566888787 455555555444 56677777763
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.6e-12 Score=145.15 Aligned_cols=223 Identities=14% Similarity=0.106 Sum_probs=146.5
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 444 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 444 (1068)
+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++.. .+....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----VVANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987643 46999999988643 23334455678999999995 344567777766
Q ss_pred EE--ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CCcEEEEeCC--CCCceEEecCCCCcEEEEEEccCCCE
Q 001490 445 VW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 519 (1068)
Q Consensus 445 iw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~d~~~ 519 (1068)
|| |+.++. ...+..+.+......|++ ||+.|+..+. +|...+|.++ .+.... +..........+|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCE
Confidence 65 554444 556665665566667755 7777776654 5666777654 333222 2222333446789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCC---eEEEEEcCCCeEEEEEeCCC
Q 001490 520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 596 (1068)
Q Consensus 520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 596 (1068)
++..+..+ +...|++||+.+++......+ .......|+||++.|+.++.++ .+++.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 99776432 345799999988875433222 2235678999999998877544 3555566 455555554332
Q ss_pred CCCCCceEEEec
Q 001490 597 GLPENPRICFNK 608 (1068)
Q Consensus 597 ~~~~v~~v~~s~ 608 (1068)
..+...+|+|
T Consensus 415 --g~~~~p~wsp 424 (427)
T PRK02889 415 --GDVREPSWGP 424 (427)
T ss_pred --CCCCCCccCC
Confidence 2356677776
No 240
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=1e-11 Score=129.00 Aligned_cols=279 Identities=14% Similarity=0.108 Sum_probs=186.0
Q ss_pred CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 389 (1068)
Q Consensus 310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las 389 (1068)
.-++..++|||.|+ +|++... ..|.+|+-..+..+... -...|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence 34789999999998 5565544 67999998876655331 1247999999999999998
Q ss_pred EeCCc---------------EEEEEEccCCCcccceEEEcccccc--EE-EEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490 390 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG 451 (1068)
Q Consensus 390 ~~~d~---------------~i~vwd~~~~~~~~~~~~~~~h~~~--v~-~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 451 (1068)
=+..+ .+.+||+.+|..+. .+.+-..+ .+ -+.|+-+.+ +++-- ....++|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence 65433 48999999987655 34444333 44 678998888 44433 2446999997 44
Q ss_pred cee-eEeccC-CCcEEEEeeeecCCccEEEE-----EEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490 452 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 524 (1068)
Q Consensus 452 ~~~-~~~~~h-~~~v~~i~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 524 (1068)
... ..+..- ...|....++|..++..|+. ...++++++|.+.....+.........-..+.|.+.|++|++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 322 112111 24577777888766666655 35678899999886655554433333345678888998876432
Q ss_pred e-------CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE--EECCCeEEEEEcCCCeEEEEEeCC
Q 001490 525 T-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAG 595 (1068)
Q Consensus 525 ~-------~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~ 595 (1068)
. +--|+..++++++....+ ....+.. ++|...+|.|.++.+++ |..+-.+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~ 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ 316 (561)
T ss_pred EEeeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence 1 112456788988874433 2222334 89999999999888766 457888999999765 44444322
Q ss_pred CCCCCCceEEEecCCCEEEEEECC---CeEEEEEC
Q 001490 596 GGLPENPRICFNKNGTLLAVIANE---NRIKILET 627 (1068)
Q Consensus 596 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~ 627 (1068)
. -+.+.|+|.+++++.++-| |.+.+|+.
T Consensus 317 ~----rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 317 K----RNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred c----cccccccCcccEEEEecCCccccceEEecc
Confidence 1 3678899999999987765 34444443
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=2.6e-10 Score=125.03 Aligned_cols=211 Identities=13% Similarity=0.174 Sum_probs=137.3
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEccC-ceeEEE---e----------cCCCCCeEEEEEeCCCCCEEEEEEC-CC
Q 001490 780 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGMD-DS 842 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~~-dg 842 (1068)
....++++|++++|+++. +|.|.++++.. +..... + +.......++.|+| +++++++... ..
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345678888888888886 68888888875 333222 1 11235678999999 8887777653 35
Q ss_pred eEEEEEcCCce--ee--eeec-ccccCeEEEEEcCCCCEEEEEe-CCCcEEEEECC--CCceeeeeeeecCCCcccCCCC
Q 001490 843 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 914 (1068)
Q Consensus 843 ~v~iwd~~~~~--~~--~~~~-~h~~~V~~l~~spdg~~l~s~s-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 914 (1068)
.|++|++.... .. ..+. ........++|+|||+++.... .+++|.++++. .+.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 21 2222 2334578899999999886654 57789999998 5544443344433221111125
Q ss_pred ceEEEEeeCCCEEEEE--eCCeEEEEECC--Ccee--eeeeccCCCcCEEEEEEecCCCEEEEEEC-CCcEEEEEc--CC
Q 001490 915 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEA--SN 985 (1068)
Q Consensus 915 v~~~~~spdg~~la~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~-dg~v~vwd~--~~ 985 (1068)
...+++||||++|.++ ..+.|.+|+++ +|.. +..+. ........++++|||++|+++.. ++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7889999999999985 45689999983 3433 22222 12445889999999999998874 568999876 57
Q ss_pred CcEEEEe
Q 001490 986 LEVQCRI 992 (1068)
Q Consensus 986 ~~~~~~~ 992 (1068)
|.+...-
T Consensus 326 G~l~~~~ 332 (345)
T PF10282_consen 326 GKLTPVG 332 (345)
T ss_dssp TEEEEEE
T ss_pred CcEEEec
Confidence 7665443
No 242
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=1.2e-12 Score=136.37 Aligned_cols=252 Identities=10% Similarity=0.125 Sum_probs=165.1
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE-----CCCCCE
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL 386 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~-----spdg~~ 386 (1068)
.+....++-.|++|+.--+ ..+.+|+...+..+.. ++.+..+.+ ....|-+| .|+|--
T Consensus 125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence 3455566667776654333 6789999886544331 122222332 22334444 456777
Q ss_pred EEEEeCCcEEEEEEccCCCcccceEEEcc--ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 464 (1068)
|..|-.-|.|.+.|....+ +..+..... ....|+|+.|-|.++. .++.+-.+|.+++||.. +....
T Consensus 188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 8889888999999876632 221111111 2368999999998877 55566779999999862 11111
Q ss_pred EEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001490 465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 544 (1068)
Q Consensus 465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 544 (1068)
+.-++..-+++..+.....-+. .+...+..+......|..++|+|||++||+.+. |++++|+|..+.+++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL 325 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence 1111211223323322211100 111333334444558899999999999999986 788999999999888
Q ss_pred eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490 545 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 607 (1068)
Q Consensus 545 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 607 (1068)
..++..- +...|++|+|||++|++|++|.-|.||.+...+.+..-.+ |...|..|+|.
T Consensus 326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG--HkSWVs~VaFD 383 (636)
T KOG2394|consen 326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG--HKSWVSVVAFD 383 (636)
T ss_pred HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc--cccceeeEeec
Confidence 7777766 7899999999999999999999999999999988877554 45678888887
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=3.4e-12 Score=128.32 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=196.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEc-CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490 309 GSSSPMSMDFHPVQHTLLLVGT-NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 387 (1068)
Q Consensus 309 h~~~V~~v~~spdg~~lla~gs-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l 387 (1068)
..+.|..++|--|++.=+..+. .|..+............. .||+.. ......+|..++.. | ..|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~-d-g~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA-D-GTL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc-C-CEE
Confidence 3457888888877765444444 556677777766655543 233322 22345566666654 3 367
Q ss_pred EEEeCCcEEEEEEccCCCcc-cceEEEccccccEEEEEEcCCCCcEEEEEEeCC--CcEEEEECCCCceeeEeccCC---
Q 001490 388 GVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGHG--- 461 (1068)
Q Consensus 388 as~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~h~--- 461 (1068)
++|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++..++ ++++||.. ..+.|||++..+.+.+-+.-.
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 77888999999999855421 111123223 45677777777775 67779988 889999999886665433211
Q ss_pred ------CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc-eEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490 462 ------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 534 (1068)
Q Consensus 462 ------~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 534 (1068)
-.++++.|.+..+...|++++.-+.+++||.+.++. +..+.....+++++...|++++++++.. .+.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence 234566676654478999999999999999987654 5577778889999999999999999876 55699
Q ss_pred EEeCCCCeeeeE-EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490 535 EWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 608 (1068)
Q Consensus 535 ~wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 608 (1068)
.+|.++++.... +.+.. +.|+++..+|..+++++++-|+.+||+|+.+.+++...-.... .+++.+.+
T Consensus 273 ~FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~ 341 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD 341 (412)
T ss_pred eecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence 999999998877 77777 9999999999999999999999999999999777766554433 45555544
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.6e-10 Score=122.75 Aligned_cols=543 Identities=9% Similarity=0.094 Sum_probs=320.1
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 391 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~ 391 (1068)
...|++|..... ++|+|+.||.+++-.+.+...-.... -+.+.+...-...+.||.+.|.-+.|+.+.+.|-+..
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 678999999887 67999999999999886643221100 0011111112234889999999999999999999999
Q ss_pred CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCCCcEEEEeee
Q 001490 392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 470 (1068)
Q Consensus 392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i~~~ 470 (1068)
.+|.|.||-+-.|.-.... .-.....-|.+++|..||. .++....||.|.+=.++..+.- +.+++. ....+.|+
T Consensus 91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws 165 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWS 165 (1189)
T ss_pred CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceeec
Confidence 9999999999887654432 2233556799999999999 6777778888877654432211 122221 12234554
Q ss_pred ecCCccEEEEEEcCCcEEEEeCCCCC-------ceE----EecCCCCcEEEEEE--------ccCCCEEEEEeeCCCCce
Q 001490 471 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAY--------SANGRRLFSCGTSKEGES 531 (1068)
Q Consensus 471 ~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~--------s~d~~~l~~~~~~~~~~~ 531 (1068)
+ |.+.++.+-..|.++++|.+..- +.. .+...+..+..+.| -||...++++.. +|
T Consensus 166 ~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 166 E--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred c--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4 66677778888999999865321 111 11122223445554 257788888876 33
Q ss_pred eEEEEeCC-CCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC---------CeEEEEEcCCCeEEEEEeCCCCCCCC
Q 001490 532 FLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 601 (1068)
Q Consensus 532 ~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 601 (1068)
.+.+..-. ..+++..-.+ -.+....|+++|..++.++.+ +.|.++.. -|+.+.+++.++. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 45554322 2233222222 357888999999999987743 34555553 5777778876654 48
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeec
Q 001490 602 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 681 (1068)
Q Consensus 602 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 681 (1068)
+.++|-..|-.++.+- |+.|.+=+++..-....+. ..| .+ .+.. ++ .
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e---~Tv---Vy----------------~y~~---~e-------~ 358 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIE---ETV---VY----------------VYQK---EE-------L 358 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEee---eEE---EE----------------EEcc---CC-------C
Confidence 8999988887777654 5777776665432111111 000 00 0000 00 0
Q ss_pred ccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCC
Q 001490 682 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 761 (1068)
Q Consensus 682 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1068)
....|.+||..+.+.... .-....+++++.+--.++.-..+|.+.-++.-.+. + ....+.+-+.
T Consensus 359 p~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~----~---~~~~l~LCNS 422 (1189)
T KOG2041|consen 359 PQYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR----S---RVYFLQLCNS 422 (1189)
T ss_pred cceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhcc----c---ceEEEeeecc
Confidence 012456777654332211 11233455666555545555555554432110000 0 0000000000
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCcee------------------------------
Q 001490 762 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT------------------------------ 811 (1068)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~------------------------------ 811 (1068)
- |. . +. ..-..|.-.-..-++.+++.++...+.+|.....+.
T Consensus 423 I-GT---~--lD--~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ 494 (1189)
T KOG2041|consen 423 I-GT---S--LD--YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLE 494 (1189)
T ss_pred c-CC---c--CC--CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceee
Confidence 0 00 0 00 011123333333467788888877788887532110
Q ss_pred --EEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001490 812 --ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889 (1068)
Q Consensus 812 --~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iw 889 (1068)
..++.+..++|.+++.+ .++|+++-..|.|+-|.+.+........ -+..|+++++.-+...+|...--|.+.+.
T Consensus 495 ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~ 570 (1189)
T KOG2041|consen 495 YSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQ 570 (1189)
T ss_pred ccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeee
Confidence 12344556788888886 3799999999999999999887766655 45668999999888999998888999998
Q ss_pred ECCC-CceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCce
Q 001490 890 DVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 944 (1068)
Q Consensus 890 d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~ 944 (1068)
|+.- ........+-.... ..|..+.|..|+..+++ -....++|++-.+.+
T Consensus 571 dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 571 DLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred ecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence 8872 11111111211111 24888999998877766 455668888765544
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=5.2e-11 Score=125.64 Aligned_cols=336 Identities=14% Similarity=0.134 Sum_probs=211.2
Q ss_pred CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEE-----ECC----
Q 001490 505 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GDD---- 575 (1068)
Q Consensus 505 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----s~d---- 575 (1068)
..++...+++++|++++.+. +..+.|++..++..+.+... ..+..+.|+|.++++.+- ..+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34567889999999999886 44589999888864433332 368899999999988762 122
Q ss_pred -CeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccc
Q 001490 576 -HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 654 (1068)
Q Consensus 576 -g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 654 (1068)
-.+.+|+++++.....+...... -++..|+.|..+.+- -..+.+.+|+..+-+. ...+-|...+..+.++|....
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCC
Confidence 34779999996666555543322 257888888754433 3347899999887322 223345667777777764222
Q ss_pred cccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccE
Q 001490 655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 734 (1068)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 734 (1068)
. .+++. ..-..+.-..+++|.............. .--...-..+.|.+-|.-|+.....
T Consensus 180 ~-------~vAvy--------vPe~kGaPa~vri~~~~~~~~~~~~a~k---sFFkadkvqm~WN~~gt~LLvLast--- 238 (566)
T KOG2315|consen 180 P-------FVAVY--------VPEKKGAPASVRIYKYPEEGQHQPVANK---SFFKADKVQMKWNKLGTALLVLAST--- 238 (566)
T ss_pred c-------eEEEE--------ccCCCCCCcEEEEeccccccccchhhhc---cccccceeEEEeccCCceEEEEEEE---
Confidence 1 11110 0112344467888886632222111110 0011223356677766655443321
Q ss_pred EEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEccCcee
Q 001490 735 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKT 811 (1068)
Q Consensus 735 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~ 811 (1068)
+++....+ .-...++.+.+.. |. -...++. ..++|.++.|+|+|+-+++.. -.++.|||+. +..
T Consensus 239 ---dVDktn~S----YYGEq~Lyll~t~-g~-s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~ 305 (566)
T KOG2315|consen 239 ---DVDKTNAS----YYGEQTLYLLATQ-GE-SVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP 305 (566)
T ss_pred ---eecCCCcc----ccccceEEEEEec-Cc-eEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence 01110000 0111123333333 22 1222232 478999999999998888776 3789999986 555
Q ss_pred EEEecCCCCCeEEEEEeCCCCCEEEEEECC---CeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeC------
Q 001490 812 ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------ 882 (1068)
Q Consensus 812 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~------ 882 (1068)
+..+ ..++=+++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-+.|+|||.+++|+..
T Consensus 306 v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 306 VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred eEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence 5444 456678999999 89998887755 7999999999999888875443 45899999999999875
Q ss_pred CCcEEEEECCC
Q 001490 883 DAQIFVWDVDG 893 (1068)
Q Consensus 883 dg~i~iwd~~~ 893 (1068)
|+.++||++.+
T Consensus 381 dNg~KiwhytG 391 (566)
T KOG2315|consen 381 DNGIKIWHYTG 391 (566)
T ss_pred cCCeEEEEecC
Confidence 67799999986
No 246
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.49 E-value=3.8e-08 Score=119.37 Aligned_cols=519 Identities=12% Similarity=0.158 Sum_probs=290.8
Q ss_pred cceEEEEECCCCCEEEEEeCC--c--EEEEEEccCCCcccceEEEc-----cccccEEEEEEcCCCCcEEEEEEeCCCcE
Q 001490 373 VSVNRVVWSPDGSLLGVAYSK--H--IVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTI 443 (1068)
Q Consensus 373 ~~V~~~~~spdg~~las~~~d--~--~i~vwd~~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 443 (1068)
..+...+|.+....+.++... . .|.+-....+........+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 456777777765554433322 2 23343333222122222222 2346899999999998 57777778889
Q ss_pred EEE----ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC---------------C--------CC
Q 001490 444 KVW----DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---------------S--------LG 496 (1068)
Q Consensus 444 ~iw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~---------------~--------~~ 496 (1068)
.+. |..+... .....-...|.+++|+| |+.+|+.++.++++.+-.-+ . ++
T Consensus 100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCcee-EEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 988 5443332 22233567899999977 66799999999888765321 0 00
Q ss_pred ceEEecC------------------------CCCcEEEEEEccCCCEEEEEeeCCC-C-ceeEEEEeCCCCeeeeEEecc
Q 001490 497 ARVDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGL 550 (1068)
Q Consensus 497 ~~~~~~~------------------------~~~~i~~~~~s~d~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~ 550 (1068)
....+.+ ....-..++|-.||.++|+.+.+.. + ...+++|+-+ |....+-...
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 0000000 1224467899999999998876332 2 5889999965 7655554433
Q ss_pred ccccCCeEEEEEecCCCEEEEEEC---CCeEEEEEcCCCeEEEEEeCC--CCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001490 551 QLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKIL 625 (1068)
Q Consensus 551 ~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 625 (1068)
. +--.+++|.|.|+.|++... ...|.+|..+ |-.-..+... .....|..+.|++|+..||+...|. |.+|
T Consensus 256 ~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW 330 (928)
T PF04762_consen 256 D---GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLW 330 (928)
T ss_pred C---CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence 3 44567899999999888653 4567777754 4333334332 2334689999999999999988765 9999
Q ss_pred ECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecC
Q 001490 626 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 705 (1068)
Q Consensus 626 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 705 (1068)
-..+....-...- .+.
T Consensus 331 t~~NYHWYLKqei--------~~~-------------------------------------------------------- 346 (928)
T PF04762_consen 331 TRSNYHWYLKQEI--------RFS-------------------------------------------------------- 346 (928)
T ss_pred EeeCCEEEEEEEE--------Ecc--------------------------------------------------------
Confidence 8876543221110 000
Q ss_pred CccccccEEEEEEecCC-ceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEE
Q 001490 706 SKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 784 (1068)
Q Consensus 706 ~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 784 (1068)
....+..+.|+|.. ..|...+.+|.+..+++.- +...+.
T Consensus 347 ---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~------------------~v~~s~------------------- 386 (928)
T PF04762_consen 347 ---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW------------------DVSRSP------------------- 386 (928)
T ss_pred ---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE------------------EEEecC-------------------
Confidence 01112225555543 3355555556666655421 111110
Q ss_pred EEec-CCCEEEEEeCCeEEEEEccCceeE-----EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee----
Q 001490 785 ALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 854 (1068)
Q Consensus 785 ~~s~-dg~~l~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---- 854 (1068)
..+| |...+++-++.++.+-.+...-.. ..+. ....|.+++|++ ++..+|+-..||.|.+|.......
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~ 464 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVK 464 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCccccc
Confidence 0011 222344444455666665543211 2222 346899999999 777799999999999998544221
Q ss_pred ----eeeec----------ccccCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeeecCCCcccCCCCceE
Q 001490 855 ----ISKLE----------GHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 917 (1068)
Q Consensus 855 ----~~~~~----------~h~~~V~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 917 (1068)
...+. .-...+..++|..+...++....+ ..+.++++...+... ......... ..+..
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~ 539 (928)
T PF04762_consen 465 PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLI 539 (928)
T ss_pred CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEE
Confidence 11111 123457888998888777766654 568888885432111 111111111 13445
Q ss_pred EEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCC---EEEEEECCCcEEEEEcCCCcEEEEec
Q 001490 918 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 918 ~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~---~l~t~~~dg~v~vwd~~~~~~~~~~~ 993 (1068)
+...++...++. ..+|.+..++..........++. .-....++...+.. .++.-+..|.+++ ++..++.
T Consensus 540 ~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~-- 612 (928)
T PF04762_consen 540 ISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS-- 612 (928)
T ss_pred EeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec--
Confidence 555555553443 77888887766544322211211 22223333333333 3443333444443 3333321
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001490 994 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
.+.+++.+ +.+|+.......+++.++.
T Consensus 613 --------------~~tSF~v~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 613 --------------NCTSFAVT---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred --------------CCceEEEE---cCEEEEEecCceEEEEECc
Confidence 12334444 3677777778889999998
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4e-12 Score=144.55 Aligned_cols=233 Identities=15% Similarity=0.100 Sum_probs=154.8
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCCeEEEEEcC--cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCc
Q 001490 296 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 373 (1068)
Q Consensus 296 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 373 (1068)
.+......+.+..|...+.+.+|||||++|+.+... +..|.+||+.+|+... +..+.+
T Consensus 187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g 246 (435)
T PRK05137 187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG 246 (435)
T ss_pred ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence 334455567778888899999999999966554432 4679999999886542 334556
Q ss_pred ceEEEEECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-CC--CcEEEEE
Q 001490 374 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVWD 447 (1068)
Q Consensus 374 ~V~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d--~~i~iwd 447 (1068)
.+.+.+|||||+.|+.. +.++ .|.+||+.+++.. .+..+........|+|||++ ++..+ .+ ..|++||
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN 320 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence 77889999999988754 4444 4888899887532 35566666778999999995 44443 33 3688889
Q ss_pred CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 524 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 524 (1068)
+.++.. ..+..+...+....|+| ||+.|+..+.+ ..|.+||+...... .+. ....+..+.|+|||+.|+..+
T Consensus 321 ~~g~~~-~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 321 ADGSNP-RRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CCCCCe-EEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEE
Confidence 776654 34443445555666755 77788776643 35778887554432 222 223467789999999998766
Q ss_pred eCCCCc--eeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490 525 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 525 ~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
...... ..++++|+..+.. ..+.. . +.+...+|+|
T Consensus 396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 533221 4688889876654 33332 2 3455666665
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=7.8e-10 Score=117.06 Aligned_cols=205 Identities=11% Similarity=0.082 Sum_probs=131.4
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-ceee-e
Q 001490 782 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S 856 (1068)
Q Consensus 782 ~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-~ 856 (1068)
..+++||||+++.+.. +..|.+.|+.+++.+.++.... ...-...+. +..+ +.+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3578889999888775 5789999999999998887533 222222222 2222 223344444433322 2211 1
Q ss_pred ---eecccccCeE-EEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcc----cCCCCceEEEEeeCCCEE
Q 001490 857 ---KLEGHSKRVT-GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRF 927 (1068)
Q Consensus 857 ---~~~~h~~~V~-~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~spdg~~l 927 (1068)
.+.+-..++. .-.|++ ||+++..... |+|.+-|+...+.............. -..+...-++++|||+++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111001110 014566 8888877666 99999998765544333333221110 011345569999999998
Q ss_pred EEEe---C--------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCcEEEEec
Q 001490 928 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 928 a~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~~ 993 (1068)
.+.. . +.|.++|+.+++.+..+..+ ..+..++|||||+ +|++.. .++.|.+.|+.+++.++.+.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8732 1 57999999999999987665 4889999999999 777666 57889999999999998884
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=2.8e-10 Score=118.61 Aligned_cols=365 Identities=12% Similarity=0.163 Sum_probs=224.7
Q ss_pred EEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCE
Q 001490 489 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568 (1068)
Q Consensus 489 vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 568 (1068)
+|+..+......+....-++..+++||.|.+|++.... .|.+|+-..+..+..+.. ..|..+.|+|.+++
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~kY 85 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEKY 85 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccce
Confidence 45444444444444455678899999999999987642 399999888776666554 46999999999999
Q ss_pred EEEEECC---------------CeEEEEEcCCCeEEEEEeCCCCCCCCc-eEEEecCCCEEEEEECCCeEEEEECCCCce
Q 001490 569 ILAAGDD---------------HVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESNS 632 (1068)
Q Consensus 569 l~~~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 632 (1068)
|.+-+.. +.+.+||..+|..+..+.........+ -+.|+-+.+++|-.. ...+.|+++...-.
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~ 164 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIE 164 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccc
Confidence 9986533 359999999999999887654432233 678888887776553 35788888632211
Q ss_pred eeeccc-cccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccc
Q 001490 633 VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 711 (1068)
Q Consensus 633 ~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 711 (1068)
...... ....+....++|.+.. ..+..
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~----------------------- 192 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNH-----------------------------DELAY----------------------- 192 (561)
T ss_pred cCchhhccccceeeEEecCCCCC-----------------------------ceEEE-----------------------
Confidence 100000 0122333333321100 00011
Q ss_pred cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490 712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 791 (1068)
Q Consensus 712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 791 (1068)
|.|. .....+.+++|.++.++. +.+..+ -...-..+.+.+.|+
T Consensus 193 ------~tPE-----k~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g~ 235 (561)
T COG5354 193 ------WTPE-----KLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLGK 235 (561)
T ss_pred ------Eccc-----cCCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCCc
Confidence 1111 012345666666553321 111101 001112345556666
Q ss_pred EEEEEe------------CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEE--EECCCeEEEEEcCCceeeee
Q 001490 792 YLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVISK 857 (1068)
Q Consensus 792 ~l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd~~~~~~~~~ 857 (1068)
++++-- +..+.|+++... .+.......++|...+|.| .++.+++ |-.+-.+.++|+... ....
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~ 312 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY 312 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecc-cCCceeEEecccccceeecccccc-eEEe
Confidence 655321 345888888733 3333335678999999999 5554443 357789999999864 4333
Q ss_pred ecccccCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE----
Q 001490 858 LEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---- 930 (1068)
Q Consensus 858 ~~~h~~~V~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~---- 930 (1068)
+ ...+=..+.|||.+++++.++-| |.+.+||..+.- .+.....+. ..+-+.|||||+++.+.
T Consensus 313 ~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 313 F--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred c--CCcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCc
Confidence 3 33444568999999999998876 569999988732 223223322 34667899999999873
Q ss_pred ---eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCC
Q 001490 931 ---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 976 (1068)
Q Consensus 931 ---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 976 (1068)
.|+.+.|||+...... ..+.+.|.|.|++..+.+.+.
T Consensus 382 k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 382 KLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 3678999998643322 456778999999888877665
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=6.9e-10 Score=111.85 Aligned_cols=281 Identities=11% Similarity=0.096 Sum_probs=184.8
Q ss_pred cccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecC---ccEEEEeccCCccCCCccceeccCCccc
Q 001490 683 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 759 (1068)
Q Consensus 683 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~ 759 (1068)
+..|.+|++++......... .......++-++++|+++.|.++..+ |.+.-|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------ 73 (346)
T ss_pred CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence 46788998874332221111 12245667889999999999888665 6666666543
Q ss_pred CCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEccC-ceeEEE--ecCCCCC----------eEE
Q 001490 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 824 (1068)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 824 (1068)
.+|.......... ...+...++++++|++|+++. .|.|.++-+.. |..... ...|.+. +..
T Consensus 74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3333222222221 233447899999999999998 58999999965 433221 1123333 788
Q ss_pred EEEeCCCCCEEEEEECC-CeEEEEEcCCceeeeeec---ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC--Ccee
Q 001490 825 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 897 (1068)
Q Consensus 825 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~-dg~i~iwd~~~--~~~~ 897 (1068)
..|.| ++++|++.+-. -+|.+|++..|++...-. .-...-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 89999 89888877532 379999999876532211 23345678999999999876665 89999999987 4444
Q ss_pred eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeC--CeEEEEECC--Cceeee-eeccCCCcCEEEEEEecCCCEEEEE
Q 001490 898 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAE--ELTCLK-QWFPISSVPISQATFSCDCRMVFTS 972 (1068)
Q Consensus 898 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d--~~i~vwd~~--~~~~~~-~~~~~h~~~v~~l~fs~dg~~l~t~ 972 (1068)
..+.+..+.....-..+...+..++||++|.++.. +.|.+|.+. +++... .....+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 44444444333333356788999999999999754 367777765 343221 1222334456788999999999999
Q ss_pred ECCC-cEEEEEcC--CCcEE
Q 001490 973 FVDG-TLSIHEAS--NLEVQ 989 (1068)
Q Consensus 973 ~~dg-~v~vwd~~--~~~~~ 989 (1068)
..++ .|.+|..+ +|++.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8764 57777655 55554
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=9.9e-11 Score=122.74 Aligned_cols=317 Identities=14% Similarity=0.187 Sum_probs=197.1
Q ss_pred cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE-----------CC
Q 001490 507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 575 (1068)
Q Consensus 507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~d 575 (1068)
.-+-+.|||.|.||++-...| |.+|--.+-..++.|.. ..|.-+.|||+.+||++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 346789999999999987533 89998777666666654 3588999999999999854 22
Q ss_pred CeEEEEEcCCCeEEEEEeCCCCC-CCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccc
Q 001490 576 HVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 654 (1068)
Q Consensus 576 g~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 654 (1068)
..++|||+.+|.....+...... ..-.-+.||.|++++|.-.. ..|.||+...-.++..-
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~K------------------ 342 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKK------------------ 342 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccc------------------
Confidence 57999999999999888763222 22345789999999998776 46888876642211100
Q ss_pred cccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccE
Q 001490 655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 734 (1068)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 734 (1068)
.+ ....|..+.|+|.+..|+--...
T Consensus 343 ---------------------sl-------------------------------ki~gIr~FswsP~~~llAYwtpe--- 367 (698)
T KOG2314|consen 343 ---------------------SL-------------------------------KISGIRDFSWSPTSNLLAYWTPE--- 367 (698)
T ss_pred ---------------------cc-------------------------------CCccccCcccCCCcceEEEEccc---
Confidence 00 12235555566655433322111
Q ss_pred EEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEE
Q 001490 735 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT 814 (1068)
Q Consensus 735 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~ 814 (1068)
+.. .. ..+.+..+.+++.+++
T Consensus 368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT 388 (698)
T ss_pred ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence 000 00 1233444444444444
Q ss_pred ecCCCCCeEEEEEeCCCCCEEEEE----------ECCCeEEEEEcCCcee-eeeecccccCeEEEEEcCCCCEEEEEeC-
Q 001490 815 IMPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG- 882 (1068)
Q Consensus 815 ~~~~~~~i~~l~~s~~d~~~lasg----------~~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~spdg~~l~s~s~- 882 (1068)
-.-+.-.-..+-|-. +|.+|+.- +.-..+.|+.+..... +..+. -...|...+|-|.|..+++.+.
T Consensus 389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcc
Confidence 333322223344544 55565542 1112456666654432 22222 4567889999999998887654
Q ss_pred --CCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE----eCCeEEEEECCCceeeeeeccCCCcC
Q 001490 883 --DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVP 956 (1068)
Q Consensus 883 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~----~d~~i~vwd~~~~~~~~~~~~~h~~~ 956 (1068)
..++.+|.+++. ......+..+... ....+.|||.|++++++ ..|.+..+|+.-..+...-...| ..
T Consensus 467 ~~k~tvsfY~~e~~-~~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~ 539 (698)
T KOG2314|consen 467 TVKNTVSFYAVETN-IKKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FA 539 (698)
T ss_pred ccccceeEEEeecC-CCchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cc
Confidence 357889988852 1223344444332 36789999999999873 46789999988533333212223 35
Q ss_pred EEEEEEecCCCEEEEEECC
Q 001490 957 ISQATFSCDCRMVFTSFVD 975 (1068)
Q Consensus 957 v~~l~fs~dg~~l~t~~~d 975 (1068)
.+.+.|.|.|+|++|+++-
T Consensus 540 at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred cccceECCCCCEEEEeeeh
Confidence 6788999999999999864
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.7e-11 Score=127.41 Aligned_cols=203 Identities=17% Similarity=0.160 Sum_probs=136.3
Q ss_pred cccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC--CcEEEEeeeecCCccEEEEEEcCCcEEEEeC
Q 001490 415 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLY 492 (1068)
Q Consensus 415 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~ 492 (1068)
+|...-+.|..+|||++ ++++|...-.|++||+..-... |..|. ..|.-.-++ .|-..++.-..|.+|.+-..
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLs--DD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILS--DDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEec--cchhhheEeecCceeeehhh
Confidence 46677789999999997 7888988999999998765433 33332 223222221 12223444445555544311
Q ss_pred CCCCceEEecCCCCcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE
Q 001490 493 DSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 571 (1068)
Q Consensus 493 ~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 571 (1068)
- +...... .+..-..++++. ...+++.++ +. .|+-+++..|..+..|.... +.++++..++....|++
T Consensus 124 ~--G~hy~~R-IP~~GRDm~y~~~scDly~~gs-g~----evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~ 192 (703)
T KOG2321|consen 124 Y--GRHYRTR-IPKFGRDMKYHKPSCDLYLVGS-GS----EVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLAC 192 (703)
T ss_pred c--Ceeeeee-cCcCCccccccCCCccEEEeec-Cc----ceEEEEcccccccccccccc---ccceeeeecCccceEEe
Confidence 1 1111111 111223455544 333444433 22 39999999999998888776 88999999999999999
Q ss_pred EECCCeEEEEEcCCCeEEEEEeCCCC---------CCCCceEEEecCCCEEEEEECCCeEEEEECCCCcee
Q 001490 572 AGDDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSV 633 (1068)
Q Consensus 572 ~s~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (1068)
|+.+|.|..||.++...+..+....+ ...|+++.|+.+|-.+++|+.+|.+.|||+.+.+++
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence 99999999999998877776654322 234788889988989999999999999998865443
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=6.3e-10 Score=117.74 Aligned_cols=269 Identities=14% Similarity=0.140 Sum_probs=169.7
Q ss_pred CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC----------CcEEEEEEcc
Q 001490 333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 402 (1068)
Q Consensus 333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~----------d~~i~vwd~~ 402 (1068)
++|.+.|..+++.+..... |. .-..+ +||||+.|+++.. +..|.+||+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8899999999888765221 11 22224 9999999988865 6789999999
Q ss_pred CCCcccceEEEcc--c---cccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccE
Q 001490 403 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 477 (1068)
Q Consensus 403 ~~~~~~~~~~~~~--h---~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~ 477 (1068)
+.+.+.... +.. + ......++++|||+.++++--+.+..|.+.|+.+++.+..+...... .-. +..+...
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-~vy---~t~e~~~ 160 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-HIF---PTANDTF 160 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-EEE---EecCCcc
Confidence 988765332 111 1 12334789999999533333345889999999999999887642211 111 1111111
Q ss_pred EEEEEcCCcEEEEeCCCCCceE-----EecCCCCcE-EEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCC-----eeee
Q 001490 478 IFSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR 545 (1068)
Q Consensus 478 l~s~s~dg~i~vwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~-----~~~~ 545 (1068)
. +-+.||......++...... .+......+ ..-.|++ +|+++.... ++.|++.|+... ....
T Consensus 161 ~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 161 F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence 1 23345544443333322211 111100000 0014455 888887765 367999995432 2232
Q ss_pred EEeccc----cccCCeEEEEEecCCCEEEEEE----------CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCC
Q 001490 546 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 611 (1068)
Q Consensus 546 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 611 (1068)
.+.... ...+...-++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk 311 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK 311 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence 222111 0123344599999999998843 22579999999999999988643 478999999999
Q ss_pred -EEEEEE-CCCeEEEEECCCCceeeec
Q 001490 612 -LLAVIA-NENRIKILETPESNSVDAA 636 (1068)
Q Consensus 612 -~l~~~~-~dg~i~iwd~~~~~~~~~~ 636 (1068)
+|++.. .++.|.++|..+++.+..+
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777766 5788999999999888776
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=6.4e-11 Score=132.91 Aligned_cols=239 Identities=12% Similarity=0.049 Sum_probs=148.4
Q ss_pred ccceeeecccCCCCceEEEEcCCCCe--EEEEEcCcC--cEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490 299 PKTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 374 (1068)
Q Consensus 299 p~~~~~~l~~h~~~V~~v~~spdg~~--lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 374 (1068)
.....+.|..+...+..-+|||||+. ++++...+| .|.+.++.+|+.... ....+.
T Consensus 173 dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l--------------------t~~~g~ 232 (428)
T PRK01029 173 DGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI--------------------LALQGN 232 (428)
T ss_pred CCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe--------------------ecCCCC
Confidence 34444556656667788899999976 333554443 588888888865432 223344
Q ss_pred eEEEEECCCCCEEEEEeC-----CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE--E
Q 001490 375 VNRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--D 447 (1068)
Q Consensus 375 V~~~~~spdg~~las~~~-----d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw--d 447 (1068)
....+|||||++||..+. +-.+.+|++.++..-.......++.......+|+|||+. ++++...++...+| +
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEE
Confidence 556899999999997653 223445777654211111122223334567899999995 23333345654444 5
Q ss_pred CCC-CceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEE
Q 001490 448 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 523 (1068)
Q Consensus 448 ~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 523 (1068)
+.. +.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+..
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred CcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEE
Confidence 542 333455555555666667755 77788776543 368999998876654332 23456778999999998876
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC
Q 001490 524 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 566 (1068)
Q Consensus 524 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 566 (1068)
... .+...|+++|+.+++......+ . +.+...+|+|-.
T Consensus 389 ~~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred ECC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 543 3467899999988776544432 2 456667787753
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=4.7e-11 Score=118.01 Aligned_cols=341 Identities=13% Similarity=0.174 Sum_probs=204.5
Q ss_pred eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEE-cCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCC
Q 001490 542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 620 (1068)
Q Consensus 542 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 620 (1068)
..++.++|+. ..++....-|..+-+++.++|.+++||- .+.++.-..+.... ..++.++.+.++.+.|++|-.+|
T Consensus 15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecc
Confidence 3456677777 7788888888888999999999999995 44455444443322 34688999999999999999999
Q ss_pred eEEEEECCCC----ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCC
Q 001490 621 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 696 (1068)
Q Consensus 621 ~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 696 (1068)
++.-+.+... ..++....|...+..+-++ .....+++.+.|..+ .|.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~----------------------~~~e~V~s~~~dk~~-~~h------ 141 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS----------------------LTHEWVLSTGKDKQF-AWH------ 141 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEec----------------------CCceeEEEeccccce-EEE------
Confidence 9998876532 2333344555555555443 222333333333221 111
Q ss_pred cccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCC
Q 001490 697 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 776 (1068)
Q Consensus 697 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1068)
+ +..|.. +--|. +.
T Consensus 142 --------------------c-~e~~~~---------lg~Y~-----------------------------~~------- 155 (404)
T KOG1409|consen 142 --------------------C-TESGNR---------LGGYN-----------------------------FE------- 155 (404)
T ss_pred --------------------e-eccCCc---------ccceE-----------------------------ee-------
Confidence 0 000100 00000 00
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEE--EccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce
Q 001490 777 SQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 853 (1068)
Q Consensus 777 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 853 (1068)
...+++.+.-. +...|. .|.|..- +......+.++.+|.+.+++++|.+ ..++|.+|..|..+.+||+.-.+
T Consensus 156 --~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 156 --TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred --ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence 00000011000 222222 2333322 2334567788999999999999999 89999999999999999997654
Q ss_pred -eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee-----eeecCC--------------------C
Q 001490 854 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR-----SLQTPD--------------------G 907 (1068)
Q Consensus 854 -~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~--------------------~ 907 (1068)
....+.+|.+.|..+...+--+.|.+++.||.|.+|+.+........ ..+... .
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h 310 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH 310 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence 34677899999999999988899999999999999998764322210 000000 0
Q ss_pred ccc-CCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceee----eeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEE
Q 001490 908 VMT-LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL----KQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSI 980 (1068)
Q Consensus 908 ~~~-~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~----~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~v 980 (1068)
|.. .+..+...+-|.-..+...+.+-.+++.|..-...- ..+...| ...|+++.+..+-.+|+|+|.|+.|.|
T Consensus 311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~i 390 (404)
T KOG1409|consen 311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKI 390 (404)
T ss_pred hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEE
Confidence 000 001112222222222222244444555543211110 0012223 457899999888889999999999999
Q ss_pred EEcCCC
Q 001490 981 HEASNL 986 (1068)
Q Consensus 981 wd~~~~ 986 (1068)
||+.+-
T Consensus 391 wd~~~v 396 (404)
T KOG1409|consen 391 WDVRSV 396 (404)
T ss_pred Eechhh
Confidence 998753
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=3.8e-09 Score=115.88 Aligned_cols=248 Identities=15% Similarity=0.209 Sum_probs=161.8
Q ss_pred cceEEEEECCCCCEEEEEeC----CcEEEEEEccCC-CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 373 VSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 373 ~~V~~~~~spdg~~las~~~----d~~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
.....++++|++++|.+... ++.|..|++... ..+...............++++|+++. ++++...++.|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEE
Confidence 46778999999999999876 568999998875 233333333323445678999999994 334444689999999
Q ss_pred CCC-CceeeE---ec----------cCCCcEEEEeeeecCCccEEEEEEc-CCcEEEEeCCCCCc-e---EEe-cCCCCc
Q 001490 448 AVT-GSRTYS---FE----------GHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGA-R---VDY-DAPGLG 507 (1068)
Q Consensus 448 ~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~-~---~~~-~~~~~~ 507 (1068)
+.. |..... +. .......++.++| +++++++... ...|.+|+++.... + ..+ ...+..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 987 443322 11 1123456677755 7777777653 45799999887662 1 122 234557
Q ss_pred EEEEEEccCCCEEEEEeeCCCCceeEEEEeCC--CCee--eeEEeccc---cccCCeEEEEEecCCCEEEEEE-CCCeEE
Q 001490 508 CTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVIK 579 (1068)
Q Consensus 508 i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i~ 579 (1068)
.+.++|+|+++++++... ..+.|.++++. ++.. +....... ........+.++|||++|+++. ..+.|.
T Consensus 194 PRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp EEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 889999999999988764 35567777776 4433 22222211 0112578899999999998865 678899
Q ss_pred EEEcC--CCe--EEEEEeCCCCCCCCceEEEecCCCEEEEEEC-CCeEEEEECC
Q 001490 580 IWDMN--KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP 628 (1068)
Q Consensus 580 iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 628 (1068)
+|++. +++ .+..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99993 343 3344443322 3588999999999998875 6789999774
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.3e-10 Score=128.46 Aligned_cols=227 Identities=12% Similarity=0.082 Sum_probs=141.1
Q ss_pred ecCCCcceEEEEECCCCCEEE---EEeCC--cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC---
Q 001490 368 VRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--- 439 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~la---s~~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--- 439 (1068)
+......+..-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....+|||||++ ++++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence 334455677889999998633 33333 368888998876432 3334445567899999995 2333322
Q ss_pred -CCcEEEEECCCC---ceeeEeccCCCcEEEEeeeecCCccEEEEEE-cCCcEEEEe--CCC-CCceEEecCCCCcEEEE
Q 001490 440 -DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWL--YDS-LGARVDYDAPGLGCTRM 511 (1068)
Q Consensus 440 -d~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~vwd--~~~-~~~~~~~~~~~~~i~~~ 511 (1068)
+-.+.+|++.++ .......++.+.....+|+| ||+.|+..+ .+|...+|. ++. ......+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 223445777653 32233322333345556655 777777665 467655554 432 22233344444566788
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEEC---CCeEEEEEcCCCeE
Q 001490 512 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQL 588 (1068)
Q Consensus 512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~ 588 (1068)
.|+|||+.|+..... .+...|++||+.+++......+ . ..+....|+|||+.|+..+. ...|+++|+.+++.
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999999999987643 3456799999998876543322 2 35677899999998876442 45788999988776
Q ss_pred EEEEeCCCCCCCCceEEEecC
Q 001490 589 LTTIDAGGGLPENPRICFNKN 609 (1068)
Q Consensus 589 ~~~~~~~~~~~~v~~v~~s~~ 609 (1068)
....... ..+...+|+|-
T Consensus 408 ~~Lt~~~---g~~~~p~Ws~~ 425 (428)
T PRK01029 408 RKIVIGS---GEKRFPSWGAF 425 (428)
T ss_pred EEeecCC---CcccCceecCC
Confidence 5544332 23566788874
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=9.7e-11 Score=133.74 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=146.4
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 377 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 377 (1068)
....+.+..+.+.+...+|||||++|+++...+ ..|.+||+.+|+... +....+.+..
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~ 247 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGA 247 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCC
Confidence 344556666777899999999999776655443 358999998886543 2222334557
Q ss_pred EEECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCc
Q 001490 378 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS 452 (1068)
Q Consensus 378 ~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~ 452 (1068)
.+|||||++|+.. +.++ .|++||+.+++.. .+..+........|+|||+. ++++...++ .|+++|+.+++
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence 8999999998854 3344 6888999987532 34455556677899999995 233333333 58888888877
Q ss_pred eeeEeccCCCcEEEEeeeecCCccEEEEEEcC-C--cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC
Q 001490 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 529 (1068)
Q Consensus 453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 529 (1068)
... +...........|++ ||+.|+..+.+ + .|.+||+.++........ .......|+|||+.++..... .+
T Consensus 323 ~~~-lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g 396 (430)
T PRK00178 323 AER-VTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QG 396 (430)
T ss_pred EEE-eecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CC
Confidence 533 221222223345544 67777776643 3 478888887654433222 222356899999999887653 34
Q ss_pred ceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490 530 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 530 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
...+++++... ...+.+..+. +.+...+|+|
T Consensus 397 ~~~l~~~~~~g-~~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 397 RGVLMLVSING-RVRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred ceEEEEEECCC-CceEECcCCC---CCcCCCccCC
Confidence 56788888754 3333444333 4566666765
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=5.4e-11 Score=134.72 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=143.5
Q ss_pred ceeeecccCCCCceEEEEcCCCCeEEEEEcCcC--cEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEE
Q 001490 301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 378 (1068)
Q Consensus 301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~ 378 (1068)
...+.+..+.+.+...+|||||++++.+...++ .|.+||+.+++.... ....+.....
T Consensus 208 ~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~ 267 (448)
T PRK04792 208 YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAP 267 (448)
T ss_pred CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCe
Confidence 334556666778899999999997665554443 588889988765321 1112234468
Q ss_pred EECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCce
Q 001490 379 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSR 453 (1068)
Q Consensus 379 ~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~ 453 (1068)
+|||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||+. ++++...++ .|+++|+.+++.
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCE
Confidence 999999988764 4555 4888898887532 34455556778999999995 333333333 577778887765
Q ss_pred eeEeccCCCcEEEEeeeecCCccEEEEEEc-CCc--EEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490 454 TYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 454 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
.. +..........+|++ ||++|+..+. ++. |.++|+.++..... ... .......|+|||+.++..... .+.
T Consensus 343 ~~-Lt~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~~-~g~ 416 (448)
T PRK04792 343 SR-LTFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTTY-QGK 416 (448)
T ss_pred EE-EecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEec-CCc
Confidence 43 322222233445654 6777766654 443 45567666554332 211 122345899999999877653 345
Q ss_pred eeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490 531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
..+++++. +|.....+..+. +.+...+|+|
T Consensus 417 ~~l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 417 QVLAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred eEEEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 67888887 555555565444 5566677776
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.4e-10 Score=128.28 Aligned_cols=223 Identities=15% Similarity=0.098 Sum_probs=142.2
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCc--
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 442 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 442 (1068)
+..+...+.+.+|||||++|+..+.+ ..|++||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 33466788999999999999987543 368999998876321 2222334457899999995 3344555664
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CCc--EEEEeCCCCCceEEecCCCCcEEEEEEccCCCE
Q 001490 443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 519 (1068)
Q Consensus 443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 519 (1068)
|+++|+.+++. ..+..+.......+|++ ||+.|+..+. ++. |.++|+.+++.... ..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCE
Confidence 88889887764 44555555566677765 6677766553 444 55566665554332 222223345789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC-C--eEEEEEcCCCeEEEEEeCCC
Q 001490 520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--VIKIWDMNKVQLLTTIDAGG 596 (1068)
Q Consensus 520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~ 596 (1068)
++..+.. .+...|.++|+.+++... +.... ......|+|+|++|+..+.+ | .+++++. +|.....+....
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 234568888988886533 22211 12234799999998876543 3 3777786 566666665432
Q ss_pred CCCCCceEEEec
Q 001490 597 GLPENPRICFNK 608 (1068)
Q Consensus 597 ~~~~v~~v~~s~ 608 (1068)
..+...+|+|
T Consensus 437 --g~~~~p~Wsp 446 (448)
T PRK04792 437 --GEVKSPAWSP 446 (448)
T ss_pred --CCcCCCccCC
Confidence 2356677776
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=4.2e-10 Score=128.52 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=142.9
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--c
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 442 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~ 442 (1068)
+..+...+...+|||||++||..+.+ ..|.+||+.+++.. .+....+.+...+|+|||+. ++++...++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~----~l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE----QITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE----EccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 33466789999999999999887644 36999999987642 23333445567899999995 333444444 6
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CC--cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCE
Q 001490 443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 519 (1068)
Q Consensus 443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 519 (1068)
|++||+.+++.. .+..+........|++ ||+.|+..+. +| .|.++++.+++..... ..........|+|||+.
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCE
Confidence 888899887653 4555555555566655 6677666553 34 4667777666543322 22223345789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC---CeEEEEEcCCCeEEEEEeCCC
Q 001490 520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG 596 (1068)
Q Consensus 520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~ 596 (1068)
++..... ++...|.+||+.+++... +.... ......|+|+|+.++..+.+ ..|++++... .....+....
T Consensus 345 i~~~~~~-~~~~~l~~~dl~tg~~~~-lt~~~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~ 417 (430)
T PRK00178 345 LVMVHRQ-DGNFHVAAQDLQRGSVRI-LTDTS----LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ 417 (430)
T ss_pred EEEEEcc-CCceEEEEEECCCCCEEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC
Confidence 9887643 234569999998876533 22211 12245899999999886643 3577777753 3334444322
Q ss_pred CCCCCceEEEec
Q 001490 597 GLPENPRICFNK 608 (1068)
Q Consensus 597 ~~~~v~~v~~s~ 608 (1068)
..+...+|+|
T Consensus 418 --g~~~~p~ws~ 427 (430)
T PRK00178 418 --GEVREPSWSP 427 (430)
T ss_pred --CCcCCCccCC
Confidence 2355666766
No 262
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=1.3e-10 Score=114.61 Aligned_cols=163 Identities=18% Similarity=0.331 Sum_probs=114.6
Q ss_pred EEEEECCCCCEEEEEeC----------CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490 376 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 445 (1068)
Q Consensus 376 ~~~~~spdg~~las~~~----------d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 445 (1068)
..+.|+|+|++|++-.. -+...+|.++..........+ ...++|.+++|+|+|+.+.++.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999999886543 134566666433322222122 2345799999999999755666767889999
Q ss_pred EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEE
Q 001490 446 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 522 (1068)
Q Consensus 446 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 522 (1068)
||++ ++.+..+. ...+..+.|+| +|++|++++.+ |.|.+||.+..+.+.... ...+..++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 66666664 56778888876 77899988754 679999999666655443 335789999999999998
Q ss_pred EeeC--CCCceeEEEEeCCCCeeeeEE
Q 001490 523 CGTS--KEGESFLVEWNESEGAIKRTY 547 (1068)
Q Consensus 523 ~~~~--~~~~~~i~~wd~~~~~~~~~~ 547 (1068)
+... ...++.+.||+. .|+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEe-cCeEeEec
Confidence 8753 223566899997 45555443
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.33 E-value=8.1e-11 Score=116.17 Aligned_cols=266 Identities=13% Similarity=0.183 Sum_probs=175.8
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC--E
Q 001490 309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS--L 386 (1068)
Q Consensus 309 h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~--~ 386 (1068)
..+-|.+|.|..+|. +||+|..+|.|.++.-+.... ...++... .+...+.|....--.-+..|..+.|.+++. .
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~ey~~~t~-fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-GEYNFQTE-FQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-cceeeeee-eeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 345799999999998 679999999999998643222 11111100 011111222111112346799999998754 4
Q ss_pred EEEEeCCcEEEEEEccCCCccc------------------c--------------eEE-EccccccEEEEEEcCCCCcEE
Q 001490 387 LGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQIS 433 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~l~~s~d~~~~~ 433 (1068)
++..+.|.+|++|.+....... . .+. -.+|+.-|.++.++.|+. .
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t 178 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T 178 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence 5566789999999986432211 0 001 136888899999999998 6
Q ss_pred EEEEeCCCcEEEEECCCCcee---eEeccC-----CCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce------E
Q 001490 434 VITCGDDKTIKVWDAVTGSRT---YSFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------V 499 (1068)
Q Consensus 434 l~s~~~d~~i~iwd~~~~~~~---~~~~~h-----~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~ 499 (1068)
++++. |=.|.+|+++--..- ..++.+ ...|++..|+|.. ...++-.+..|+|++.|++..... .
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 77654 778999998743322 222222 3457777888864 357888889999999999843211 1
Q ss_pred Eec----------CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEeccccc---------cCC---
Q 001490 500 DYD----------APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQ---------HNS--- 556 (1068)
Q Consensus 500 ~~~----------~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~---------~~~--- 556 (1068)
... ..-..|..+.|+++|+++++-. -.+|.+||+. ..+++.+++-|..- .+.
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 111 1112578899999999999853 3579999994 56677777665421 112
Q ss_pred eEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001490 557 VSVVHFDTAKDQILAAGDDHVIKIWDMNKV 586 (1068)
Q Consensus 557 v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 586 (1068)
-..++|+.++.++++|+..+.+++++...|
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCC
Confidence 245789999999999999999999996554
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.8e-08 Score=101.85 Aligned_cols=303 Identities=12% Similarity=0.147 Sum_probs=186.8
Q ss_pred CCcEEEEeCCCCCceE---EecCCCCcEEEEEEccCCCEEEEEeeCCC-CceeEEEEeCCCCeeeeEEeccccccCCeEE
Q 001490 484 DGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSV 559 (1068)
Q Consensus 484 dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 559 (1068)
++-|.+|++++..... ..-.....++-++|+|+++.|.++...++ +.-..+-||.++|++...-.... .....+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCeE
Confidence 5679999998544433 22334457788999999999999887533 33334445555566532222111 1234488
Q ss_pred EEEecCCCEEEEEE-CCCeEEEEEcCC-CeEEE---EEeCCCC-------CCCCceEEEecCCCEEEEEEC-CCeEEEEE
Q 001490 560 VHFDTAKDQILAAG-DDHVIKIWDMNK-VQLLT---TIDAGGG-------LPENPRICFNKNGTLLAVIAN-ENRIKILE 626 (1068)
Q Consensus 560 ~~~~~~~~~l~~~s-~dg~i~iwd~~~-~~~~~---~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd 626 (1068)
+++++++++++++. .-|.|.++-++. |.+.. .+...+. .+.+....+.|++++|++..- .-.|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 99999999999976 568899999865 44332 2222211 122677889999999888754 34688888
Q ss_pred CCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCC
Q 001490 627 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 706 (1068)
Q Consensus 627 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 706 (1068)
+..++....-.. .+
T Consensus 174 ~~dg~L~~~~~~----------------------------------------------------------------~v-- 187 (346)
T COG2706 174 LDDGKLTPADPA----------------------------------------------------------------EV-- 187 (346)
T ss_pred cccCcccccccc----------------------------------------------------------------cc--
Confidence 886533211110 00
Q ss_pred ccccccEEEEEEecCCceEEEeec-CccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEE
Q 001490 707 KVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 785 (1068)
Q Consensus 707 ~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 785 (1068)
......+.++|+|+++......+ +++|.+|..+... ++...-..+ + .+..++ .......++.
T Consensus 188 -~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~----g~~~~lQ~i---~------tlP~dF---~g~~~~aaIh 250 (346)
T COG2706 188 -KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV----GKFEELQTI---D------TLPEDF---TGTNWAAAIH 250 (346)
T ss_pred -CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC----ceEEEeeee---c------cCcccc---CCCCceeEEE
Confidence 02334567899999998766665 7899999876531 111110000 0 111112 1355677899
Q ss_pred EecCCCEEEEEeC--CeEEEEEccC--cee--EEEecCCCCCeEEEEEeCCCCCEEEEEECCC-eEEEEEcC--Cceeee
Q 001490 786 LSKNDAYLFSASG--GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNAR--SSEVIS 856 (1068)
Q Consensus 786 ~s~dg~~l~~~~d--g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~--~~~~~~ 856 (1068)
+++||++|.++.. +.|.+|.+.. ++. +.....+...-+...|++ ++++|+++..++ .|.+|... +|++..
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 9999999999873 5788887753 332 222333444578899999 888888888664 78888664 555443
Q ss_pred eec-ccccCeEEEEEc
Q 001490 857 KLE-GHSKRVTGLVFS 871 (1068)
Q Consensus 857 ~~~-~h~~~V~~l~~s 871 (1068)
... .......||.|.
T Consensus 330 ~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 330 LGRYAVVPEPVCVKFL 345 (346)
T ss_pred cccccCCCCcEEEEEc
Confidence 332 233445666664
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.8e-10 Score=117.75 Aligned_cols=286 Identities=9% Similarity=0.118 Sum_probs=189.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEcC-----------cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490 309 GSSSPMSMDFHPVQHTLLLVGTN-----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 377 (1068)
Q Consensus 309 h~~~V~~v~~spdg~~lla~gs~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 377 (1068)
|. .|..+.|||+.++| +|=+. ...++|||+.+|...+.+.+ +.+....-.-
T Consensus 249 Hp-~Vq~idfSP~EkYL-VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~----------------~~~~~~~WP~ 310 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKYL-VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV----------------IKSPYLKWPI 310 (698)
T ss_pred CC-CceeeecCCccceE-EEecCCccccCcccCCCceEEEEEccccchhcceec----------------cCCCccccce
Confidence 54 79999999999855 54332 14699999999998876432 1222222334
Q ss_pred EEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC-----CCcEEEEECCCCc
Q 001490 378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDAVTGS 452 (1068)
Q Consensus 378 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-----d~~i~iwd~~~~~ 452 (1068)
+.||.|++|+|--..+ +|.||+..+-..+.. .. -.-..|....|+|.+. +||--.. -..+.+-.+.+++
T Consensus 311 frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ks--lki~gIr~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~ 384 (698)
T KOG2314|consen 311 FRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KS--LKISGIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKR 384 (698)
T ss_pred EEeccCCceeEEeccc-eEEEEecCceeeecc-cc--cCCccccCcccCCCcc--eEEEEcccccCCcceEEEEecCccc
Confidence 7899999999987665 599999876332211 01 1234688899999988 5554332 2357777778888
Q ss_pred eeeEeccCCCcEEEEeeeecCCccEEEEEEc----------CCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEE
Q 001490 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV----------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 522 (1068)
Q Consensus 453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 522 (1068)
.+++-.-| .|..+.+++..+|.+|+.--. -..+.|+.++........-.-...|...+|-|.|..+++
T Consensus 385 ~iRt~nlf--nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 385 EIRTKNLF--NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred eeeeccce--eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 77765444 366677777888888876421 123556666555544444444557888999999998887
Q ss_pred EeeCCCCceeEEEEeCCC-C---eeeeEEeccccccCCeEEEEEecCCCEEEEE---ECCCeEEEEEcCCCeEEEEEeCC
Q 001490 523 CGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQLLTTIDAG 595 (1068)
Q Consensus 523 ~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~~~~~~~~ 595 (1068)
.+... ...++..|.+++ . +.+..+.. ...+.+.|+|.|++++.+ |..|.+.++|..-.....+- ..
T Consensus 463 i~g~~-~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~ 535 (698)
T KOG2314|consen 463 ISGNT-VKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SP 535 (698)
T ss_pred EEccc-cccceeEEEeecCCCchhhhhhhcc-----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-Cc
Confidence 76533 366788888773 2 23333332 457889999999999875 46789999998753322221 11
Q ss_pred CCCCCCceEEEecCCCEEEEEEC------CCeEEEEECC
Q 001490 596 GGLPENPRICFNKNGTLLAVIAN------ENRIKILETP 628 (1068)
Q Consensus 596 ~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iwd~~ 628 (1068)
.+ ...+.+.|.|.|+++++++. |...++|+..
T Consensus 536 eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 536 EH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 11 23578999999999999876 3445566655
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=3.9e-10 Score=128.87 Aligned_cols=210 Identities=15% Similarity=0.083 Sum_probs=139.4
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--c
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 442 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~ 442 (1068)
+..+...+...+|||||++||.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34466678999999999999988654 47999999987532 23345566778999999985 334444444 5
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CC--cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCE
Q 001490 443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 519 (1068)
Q Consensus 443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 519 (1068)
|++||+.++.. ..+..+........|++ ||+.|+..+. ++ .|.++++.+.+.. .+.........+.|+|||++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence 89999888764 34444544444556654 7777776654 33 5777777665433 33334456677899999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCC---eEEEEEcCCCeEEEEEe
Q 001490 520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 593 (1068)
Q Consensus 520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 593 (1068)
++...... +...|.+||+.++... .+... .......|+|++++|+.++.++ .+++.+. ++.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeE-EccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887533 3557999999886543 22221 1234568999999998876554 3555554 344444444
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=1.5e-10 Score=132.23 Aligned_cols=216 Identities=19% Similarity=0.160 Sum_probs=142.0
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 377 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 377 (1068)
....+.+..+...+...+|||||++++.+...+ ..|.+||+.+++... +..+...+.+
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~ 238 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA 238 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 344566666776899999999999665544333 479999999886543 2234456677
Q ss_pred EEECCCCCEEEEE-eCC--cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-CCC--cEEEEECCCC
Q 001490 378 VVWSPDGSLLGVA-YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG 451 (1068)
Q Consensus 378 ~~~spdg~~las~-~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~--~i~iwd~~~~ 451 (1068)
++|+|||+.|+.. +.+ ..|++||+.++... .+..+........|+|||++ |+..+ .++ .|+++|+.++
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence 9999999988754 333 35889999886532 33445555567899999994 44433 333 5888898777
Q ss_pred ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCC---cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490 452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 528 (1068)
Q Consensus 452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 528 (1068)
+.. .+..+...+....|++ +|++++.++.++ .|.+||+.+...... ... .......|+|||+.|+.....+
T Consensus 313 ~~~-~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l-~~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 313 EVR-RLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERVL-TDT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred CEE-EeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEeCC-
Confidence 643 4444555566667755 777888887776 788888877543322 221 2334568999999998877543
Q ss_pred CceeEEEEeCCCCeeeeEEe
Q 001490 529 GESFLVEWNESEGAIKRTYQ 548 (1068)
Q Consensus 529 ~~~~i~~wd~~~~~~~~~~~ 548 (1068)
+...+++.+.. +.....+.
T Consensus 387 ~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 387 GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred CcEEEEEEECC-CceeeECC
Confidence 34567776643 44444443
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=3.4e-10 Score=111.87 Aligned_cols=247 Identities=15% Similarity=0.162 Sum_probs=152.6
Q ss_pred CcceEEEEECCCCCEEEEEeCCcEEEEEEccCCC--cccceEEEcccc------------ccEEEEEEcCCCCcEEEEEE
Q 001490 372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHV------------GNVNDLAFSAPCKQISVITC 437 (1068)
Q Consensus 372 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~d~~~~~l~s~ 437 (1068)
.+-|.++.|..+|.+||+|..+|.|.++.-+... .......+..|. ..|..+.|.+++....++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3578899999999999999999999998654322 122222333343 46889999998876677778
Q ss_pred eCCCcEEEEECCCCceee-----EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEE
Q 001490 438 GDDKTIKVWDAVTGSRTY-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRM 511 (1068)
Q Consensus 438 ~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~ 511 (1068)
+.|++|++|.+....... ..++..+.+.++.. .+.+..|-.+.. .+.. .-..|..-|.++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~--------p~~~~~~~~vea------~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL--------PVEGRHDLEVEA------SPRRVYANAHTYHINSI 170 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeec--------eeeccccceeee------eeeeeccccceeEeeee
Confidence 889999999876433221 11122223333321 111111111100 0111 123456679999
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE---eccc--cccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCC
Q 001490 512 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY---QGLQ--LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNK 585 (1068)
Q Consensus 512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~---~~~~--~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~ 585 (1068)
+++.|+..++++- +-.|.+|+++--..--.+ +.+. .-...|++..|+|.. +.++-.+..|+|++-|++.
T Consensus 171 S~NsD~Et~lSAD-----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 171 SVNSDKETFLSAD-----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eecCccceEeecc-----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 9999999999874 677999998743221111 1111 001357888999975 4555588899999999984
Q ss_pred CeEE------EEEeCC--------CCCCCCceEEEecCCCEEEEEECCCeEEEEECC-CCceeeeccc
Q 001490 586 VQLL------TTIDAG--------GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGV 638 (1068)
Q Consensus 586 ~~~~------~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~ 638 (1068)
..+- ...+.. .-...|..+.|+++|+++++-.. -+|++||+. ..+++.+...
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence 3221 111110 11235778999999999997665 689999994 4455544443
No 269
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.5e-10 Score=116.70 Aligned_cols=208 Identities=11% Similarity=0.104 Sum_probs=157.9
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEccCce----eEEEecCCCCCeEEEEEeCCCCCEEEEEECC--CeEEEEEcC
Q 001490 777 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----TILTIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNAR 850 (1068)
Q Consensus 777 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~ 850 (1068)
....|..++. .||.++.+.++|.+.+|..+.+. .+..+..+ ..+..+.-++.+..++|+|+.. ..+.|||+.
T Consensus 104 ~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 104 GTKSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred ccccccchhh-cCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 3455555554 36666666678999999998443 22233322 4555666666566788889998 899999999
Q ss_pred Cceeeeeeccc---------ccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEE
Q 001490 851 SSEVISKLEGH---------SKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 919 (1068)
Q Consensus 851 ~~~~~~~~~~h---------~~~V~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 919 (1068)
..+.+..-+.- .-.++++.|-+. ...||+++.-+.|++||...+. +++..+.-.. .+++++.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E---~~is~~~ 254 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE---NPISSTG 254 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc---Ccceeee
Confidence 88655443321 123567899887 8899999999999999998644 2222222222 3699999
Q ss_pred EeeCCCEEEEE-eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490 920 FHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 920 ~spdg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 993 (1068)
.-|+|+++.++ .-+.+..+|.++++.....+.+-.+.|+++...|.+++|+++|-|+.|||+|+.+..++...+
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 99999999986 568899999999999887788889999999999999999999999999999999988876555
No 270
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.30 E-value=2.8e-10 Score=112.26 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=112.5
Q ss_pred EEEEEcCCCCcEEEEEEeC--------CCcEEEEECC-CCceeeEecc-CCCcEEEEeeeecCCccEEEEEEcCCcEEEE
Q 001490 421 NDLAFSAPCKQISVITCGD--------DKTIKVWDAV-TGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490 (1068)
Q Consensus 421 ~~l~~s~d~~~~~l~s~~~--------d~~i~iwd~~-~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vw 490 (1068)
..+.|+++|+.+++.+... -+...+|.+. .+.....+.- ..++|.+++|+|+++.-.++.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 4688999999744444411 1234555542 2333444432 4457999999885432223445567899999
Q ss_pred eCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEE
Q 001490 491 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 570 (1068)
Q Consensus 491 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 570 (1068)
|++ ......+ ....+..+.|+|+|+++++++.++ ..+.|.+||.++.+.+..+.. ..+..++|+|+|++++
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n-~~G~l~~wd~~~~~~i~~~~~-----~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGN-LNGDLEFWDVRKKKKISTFEH-----SDATDVEWSPDGRYLA 159 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccC-CCcEEEEEECCCCEEeecccc-----CcEEEEEEcCCCCEEE
Confidence 996 3333333 456778999999999999987532 356799999998888776653 3578999999999999
Q ss_pred EEE------CCCeEEEEEcCCCeEEEEEe
Q 001490 571 AAG------DDHVIKIWDMNKVQLLTTID 593 (1068)
Q Consensus 571 ~~s------~dg~i~iwd~~~~~~~~~~~ 593 (1068)
+++ .|+.++||+.. |+.+....
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEecc
Confidence 976 47889999984 66665544
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.29 E-value=6.8e-11 Score=116.87 Aligned_cols=357 Identities=15% Similarity=0.137 Sum_probs=228.4
Q ss_pred eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE--EecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
.++.++||.+.++....-+..+ -+++.+.|.++|+|--+...+.. .......+++++.+.++.+.|+++-. .
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----n 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----N 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----c
Confidence 4567789999888887766554 59999999999999654443332 23334568899999999999998876 4
Q ss_pred eeEEEEeCC----CCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490 531 SFLVEWNES----EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 606 (1068)
Q Consensus 531 ~~i~~wd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 606 (1068)
+.+.-+.+. .....+.+..|. ..+..+-|+-..+++++.+.|..+.---.+.+..+........ ...+.+
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~ 163 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF 163 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence 456666443 345566666777 8999999999899999999988776555555555543322211 111112
Q ss_pred ecCCCEEEEEECCCeEEEEECC--CCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccc
Q 001490 607 NKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 684 (1068)
Q Consensus 607 s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 684 (1068)
.-. +..+|...|.|.+-.+. .-..+..+.+|.+.+.++.+. +..+.+.++..|.
T Consensus 164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASDH 219 (404)
T ss_pred eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEeccccC
Confidence 111 55566666777665554 346788899999999999996 5677889999999
Q ss_pred cceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCcccee-----ccCCccc
Q 001490 685 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT-----KVPPRLY 759 (1068)
Q Consensus 685 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~ 759 (1068)
.+.+||+........ ...+|...+..+...+--+.+++++.||.|.+|+++.......+.... ...+..|
T Consensus 220 ~vi~wdigg~~g~~~-----el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAY-----ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ceEEEeccCCcceee-----eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 999999875443322 234588889999888889999999999999999997654432222211 1122233
Q ss_pred CCCCCCceeeecCCCC--CC-CCCeeEEEEecCCCEEEEEeCCeEEEEEcc-------CceeEEEecCCCCCeEEEEEeC
Q 001490 760 QPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFNP 829 (1068)
Q Consensus 760 ~~~~~~~~~~~~~~~~--~~-~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s~ 829 (1068)
+...--......+..+ .+ ...+...+-+.-..+...+.+-.+|+-|.- +..++..+......|+++.+..
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe 374 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE 374 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence 2211100000000000 01 112222222222223333333345554432 1122444444445899999988
Q ss_pred CCCCEEEEEECCCeEEEEEcCC
Q 001490 830 HDNNVIAIGMDDSTILIYNARS 851 (1068)
Q Consensus 830 ~d~~~lasg~~dg~v~iwd~~~ 851 (1068)
.-.+|++++.|..|+|||+..
T Consensus 375 -tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 375 -TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -hccceeecCCceEEEEEechh
Confidence 777999999999999999874
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.28 E-value=6.2e-10 Score=118.78 Aligned_cols=194 Identities=13% Similarity=0.182 Sum_probs=156.1
Q ss_pred CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEc------C------------CCCcEEEEEEeCCCc
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 442 (1068)
Q Consensus 381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~------------d~~~~~l~s~~~d~~ 442 (1068)
.|-+.|+|....||.+++||+..++..........-.+..++..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3557899999999999999999987544322222233444555552 2 122337888999999
Q ss_pred EEEEECCCCceeeEec--cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEE
Q 001490 443 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 520 (1068)
Q Consensus 443 i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 520 (1068)
|.+|++..|+....+. .|.+.|.++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888775 5999999988754 45689999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC-----CCEEEE-EECCCeEEEEEcCC
Q 001490 521 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK 585 (1068)
Q Consensus 521 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~s~dg~i~iwd~~~ 585 (1068)
++++. .|.+||+++++.+..|.||. ++|+++.|..+ |.++++ ...+..+.+|-+..
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98864 59999999999999999999 99999999887 777777 44566678886654
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=2.2e-08 Score=112.40 Aligned_cols=148 Identities=13% Similarity=0.040 Sum_probs=96.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEE
Q 001490 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 512 (1068)
Q Consensus 433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 512 (1068)
.++.++.++.|..+|..+|+.+............... ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5777888999999999999998776544332222222 445788889999999999998888776554432111111
Q ss_pred EccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccc--CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q 001490 513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 590 (1068)
Q Consensus 513 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 590 (1068)
. .+..++.+.. ++.++.||..+|+.+-.+....... ....+.... +..++.+..+|.+..+|.++|+.+.
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 2 2344555443 5679999999998877665432000 000111121 2467788889999999999998765
Q ss_pred EE
Q 001490 591 TI 592 (1068)
Q Consensus 591 ~~ 592 (1068)
..
T Consensus 215 ~~ 216 (377)
T TIGR03300 215 EQ 216 (377)
T ss_pred ee
Confidence 54
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=7.5e-08 Score=108.06 Aligned_cols=208 Identities=10% Similarity=0.073 Sum_probs=125.8
Q ss_pred eCCeEEEEEccCceeEEEecCCCCCe-----EEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccccc----C---
Q 001490 797 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R--- 864 (1068)
Q Consensus 797 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~----~--- 864 (1068)
.++.+..||.++|+.+..+....... .+..+. + ..++.+..+|.+..+|..+|+.+........ .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 36677777777777766654332211 112222 3 3677788899999999999987654321100 0
Q ss_pred ---e-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEE
Q 001490 865 ---V-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 939 (1068)
Q Consensus 865 ---V-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd 939 (1068)
+ ....+ .+..+..++.+|.++.||..+++..-... ... ..... .++..+.+ ..++.++.+|
T Consensus 230 ~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 230 LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALD 295 (377)
T ss_pred hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEE
Confidence 0 01112 34577778889999999999886433211 111 11122 23444544 6789999999
Q ss_pred CCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCC
Q 001490 940 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1019 (1068)
Q Consensus 940 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1019 (1068)
..+|+.+-...........+... .+.+|++++.+|.|+++|..+|+.+.++.... ..+... .++. +
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~s-p~~~---~ 361 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASP-PVVV---G 361 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccC-CEEE---C
Confidence 99998764421111112222222 46688899999999999999999998877221 111111 1122 3
Q ss_pred CEEEEEeCCCcEEEEe
Q 001490 1020 TQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus 1020 ~~l~~~~~dg~i~~w~ 1035 (1068)
+.|++++.||.|+.|.
T Consensus 362 ~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 362 DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CEEEEEeCCceEEEeC
Confidence 5689999999998763
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=6.2e-09 Score=111.33 Aligned_cols=190 Identities=18% Similarity=0.261 Sum_probs=148.3
Q ss_pred eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE--------------------CCC
Q 001490 324 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--------------------SPD 383 (1068)
Q Consensus 324 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~--------------------spd 383 (1068)
.++|..+.||.++|||+.+++....+.- ...-++.-.+..| +.|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 4779999999999999998876653210 0001122223333 224
Q ss_pred CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490 384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 463 (1068)
Q Consensus 384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 463 (1068)
-..+|-|...|.|.+|++..|+..... .-..|.+.|.++.++.+-. .+.+++.|+.+..|+..+++.++.+++....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 456778888999999999998754432 3357999999999998888 8999999999999999999999999999999
Q ss_pred EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC-----CCEEEEEeeCCCCceeEEEEeC
Q 001490 464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-----~~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
+.++++++ ||..+++++ +.|++||+++.+....+.+|.++|.+++|..+ |.+++++..- +..+.+|-+
T Consensus 147 ~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~---~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA---ERGITVWVV 219 (541)
T ss_pred cceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc---ccceeEEEE
Confidence 99999876 678888876 68999999999999999999999999999887 7788776532 334666654
Q ss_pred C
Q 001490 539 S 539 (1068)
Q Consensus 539 ~ 539 (1068)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 4
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=1.1e-07 Score=117.97 Aligned_cols=255 Identities=11% Similarity=0.093 Sum_probs=161.6
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEEccCceeEEEecC--C------------CCCeEEEEEeCCCCCEEEEEE-CCCeE
Q 001490 782 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 844 (1068)
Q Consensus 782 ~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v 844 (1068)
..+++++++..+.++. ++.|+++|.. ++.+..+.. . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688988655454444 5889999986 444433332 1 12357899998 666555554 45789
Q ss_pred EEEEcCCceeeeeeccc-----------------ccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeee---ee
Q 001490 845 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 903 (1068)
Q Consensus 845 ~iwd~~~~~~~~~~~~h-----------------~~~V~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~ 903 (1068)
+++|..++.. .++.+- -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 333210 11346799999 56677777888999999998765322100 00
Q ss_pred cCCCcc---cCCCCceEEEEeeCCCEEEE--EeCCeEEEEECCCceeeeee------------ccC--------CCcCEE
Q 001490 904 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQW------------FPI--------SSVPIS 958 (1068)
Q Consensus 904 ~~~~~~---~~~~~v~~~~~spdg~~la~--~~d~~i~vwd~~~~~~~~~~------------~~~--------h~~~v~ 958 (1068)
...+.. ........++|+|+|..|.+ ..++.|++||+.++...... +.. .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 00124567999999986655 46789999999876532110 000 011346
Q ss_pred EEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccc-cCCC--CccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001490 959 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus 959 ~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
.++|+++|..+++-+.++.|++||..++........... ...+ ....-..+..++++| +++.+++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 899999999888888899999999998877644321110 0000 001113567899999 688888888999999999
Q ss_pred CCCCC
Q 001490 1036 PNEPG 1040 (1068)
Q Consensus 1036 ~~~~~ 1040 (1068)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96543
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=2.3e-08 Score=111.35 Aligned_cols=208 Identities=15% Similarity=0.039 Sum_probs=131.1
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcC---cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 376 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 376 (1068)
....+.+.... .+...+|||||+++++..+. +..|.++|+.+|+... +....+.+.
T Consensus 178 g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~ 236 (419)
T PRK04043 178 LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLV 236 (419)
T ss_pred CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEE
Confidence 33344444333 77889999999864454333 3569999998887653 222345566
Q ss_pred EEEECCCCCEEEEEeC---CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCC
Q 001490 377 RVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTG 451 (1068)
Q Consensus 377 ~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~ 451 (1068)
..+|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++.+ ...+ .|.+.|+.+|
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSG 311 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCC
Confidence 7889999998876532 35788889888753 2 2334443344568999999644443 2223 6888899888
Q ss_pred ceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---------CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEE
Q 001490 452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 522 (1068)
Q Consensus 452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 522 (1068)
+..+... .... ...| ++||+.|+..+.. ..|.+.|++++.... +... .......|+|||+.++.
T Consensus 312 ~~~rlt~-~g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 312 SVEQVVF-HGKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMF 384 (419)
T ss_pred CeEeCcc-CCCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEE
Confidence 7643322 1111 2255 4477777776644 257777877765433 2222 23335889999999988
Q ss_pred EeeCCCCceeEEEEeCCCC
Q 001490 523 CGTSKEGESFLVEWNESEG 541 (1068)
Q Consensus 523 ~~~~~~~~~~i~~wd~~~~ 541 (1068)
.... .+...+.+.++...
T Consensus 385 ~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 385 IKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred EEcc-CCcEEEEEEecCCC
Confidence 7654 34566888887544
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=9.1e-08 Score=118.62 Aligned_cols=260 Identities=11% Similarity=0.069 Sum_probs=162.7
Q ss_pred EEEEEecC-CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001490 714 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 792 (1068)
Q Consensus 714 ~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 792 (1068)
..++++++ +..+++-..++.|++++.........+.. .. .....|. +. .+.-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~---g~---~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST---GE---EGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC---CC---cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45778764 55666666678888888653211000000 00 0000010 00 012234678999999987
Q ss_pred EEEEe--CCeEEEEEccCceeEEEecCC-----------------CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce
Q 001490 793 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 853 (1068)
Q Consensus 793 l~~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 853 (1068)
|++++ ++.|+++|..++.. .++.+. -.....++|+|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77776 47799999877643 333210 11346899999667777777788999999998765
Q ss_pred eeeeecc---------c------ccCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeee--------eecCC---
Q 001490 854 VISKLEG---------H------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRS--------LQTPD--- 906 (1068)
Q Consensus 854 ~~~~~~~---------h------~~~V~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~--- 906 (1068)
.. .+.+ + -.....|+++|||++ +++-+.++.|++||+.++......- +....
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 1111 1 123567999999984 4555667899999998765321100 00000
Q ss_pred Cc--ccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccC------------CCcCEEEEEEecCCCEEEE
Q 001490 907 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 971 (1068)
Q Consensus 907 ~~--~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t 971 (1068)
+. .........++++++|.++++ ..+++|++||..++......-.+ .-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000013468999999997777 67889999999887655321111 1235778999999999888
Q ss_pred EECCCcEEEEEcCCCcE
Q 001490 972 SFVDGTLSIHEASNLEV 988 (1068)
Q Consensus 972 ~~~dg~v~vwd~~~~~~ 988 (1068)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88899999999999875
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=1.4e-08 Score=98.66 Aligned_cols=251 Identities=16% Similarity=0.121 Sum_probs=161.0
Q ss_pred CceEEEEc---CCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCC---cceEEEEECCCCC
Q 001490 312 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG---VSVNRVVWSPDGS 385 (1068)
Q Consensus 312 ~V~~v~~s---pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~~~~spdg~ 385 (1068)
.+..+.|. -+|...++-+..+|.|.++.....+..... +. +..-. ....++.|++.|.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L--------------~~--ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL--------------RG--LSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee--------------cc--cchhhhhheeeeEEEeeccCc
Confidence 56666665 244435566667788888876543322210 00 11111 1245788999999
Q ss_pred EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC-CCceeeE-eccCCCc
Q 001490 386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP 463 (1068)
Q Consensus 386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 463 (1068)
.++++..+|.+.+-+..... +.....+++|.-+.+-+.|+..... ++.+||+|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999988855544332 2333367899999999999877665 89999999999999998 4445543 5678899
Q ss_pred EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCC--CEEEEEeeCCCCceeEEEEeCCCC
Q 001490 464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEG 541 (1068)
Q Consensus 464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~~wd~~~~ 541 (1068)
|.+|.-++. .+.++++|+.|..|++||.++......-....+.|..+..+|.- +.|++|-.+| ..+-+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 999876653 66799999999999999999777666555566889999999843 3455544322 344444332
Q ss_pred --eeeeEEeccccccCCeEEEEEecCCCEEEEEE-CCCeEE-EEEcCCC
Q 001490 542 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 586 (1068)
Q Consensus 542 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~ 586 (1068)
+....+..+..+..-...-.|......+++++ .|+.++ +|-.-++
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 21112222222224455555544345566654 566644 6654443
No 280
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.99 E-value=0.00019 Score=82.31 Aligned_cols=581 Identities=10% Similarity=0.056 Sum_probs=284.5
Q ss_pred cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC----
Q 001490 308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---- 383 (1068)
Q Consensus 308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd---- 383 (1068)
|...-..|+.+-++| +|.+||.-|.=.+-.+.+........ ...+. + ..-++|..+..-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccC
Confidence 444445667777787 56888887765666655433221100 00000 1 12246666665432
Q ss_pred CCEEEEEe---CCcEEEEEEccCCCcccceEEEccccccEEEEE--EcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001490 384 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 458 (1068)
Q Consensus 384 g~~las~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 458 (1068)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-...++++-. +.-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~--~eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI--SETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec--cceEEEEEccceEEeccc
Confidence 34566664 478899876554432222234555 34466666 44433321333322 223444432221111222
Q ss_pred cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490 459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
+.......+..+.- ++..|+-.. ...||+++-. .....+.... .++....+.+...++.++. .+.+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222333332221 222222222 2345555433 2222333333 3333334444445555443 334555566
Q ss_pred CCCeeeeEEeccccccCCeEEEEEecCC------CEEEEEECCCeEEEE-EcCCCeEEEEEeC--CCCCCCCceEEEecC
Q 001490 539 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDA--GGGLPENPRICFNKN 609 (1068)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~--~~~~~~v~~v~~s~~ 609 (1068)
..+......+ ..-...|.|+.++|-+ ++++.|..+..+.+. -..+...+..... ..-...|....+-.|
T Consensus 517 ~~~~l~e~~~--~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSH--KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeee--heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 5554322222 1124779999998752 256677766555443 3334443333322 211122344455557
Q ss_pred CCEEEEEECCCeEEEEECC--CCceeeecc--ccccceeeeEE----------cCCccccccccccCeeeecCCC-----
Q 001490 610 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLRKLSV----------NPISTVTGAGIANGSVSVNEDP----- 670 (1068)
Q Consensus 610 ~~~l~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~----- 670 (1068)
..+|.++..||.+.-+-+. ++..-..-+ -...++.--.| ..+...+ +-..++...+.+-.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~v-iY~~n~kLv~spls~kev~ 673 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTV-IYSSNGKLVYSPLSLKEVN 673 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEE-EEecCCcEEEeccchHHhh
Confidence 8899999999998876554 332111110 00111111111 1111111 11111222221100
Q ss_pred ------CCCc-ccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCc
Q 001490 671 ------KEDV-KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 743 (1068)
Q Consensus 671 ------~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~ 743 (1068)
++.. ..++++ ..+.+++..++.-.....+.+ |. ....+.+++.+....+.+.+.......=
T Consensus 674 ~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtv--pl---~~~prrI~~q~~sl~~~v~s~r~e~~~~------ 741 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTV--PL---GESPRRICYQESSLTFGVLSNRIESSAE------ 741 (1096)
T ss_pred hhcccccccCCceEEEe-cCCceEEEEecchhhcceeee--cC---CCChhheEecccceEEEEEecccccchh------
Confidence 1111 122222 234555555543322222222 21 2344556666644444443332211100
Q ss_pred cCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCeEEEEEccCcee
Q 001490 744 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKT 811 (1068)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~~-----------dg~i~iwd~~~~~~ 811 (1068)
..+.......++++|..+-..+...++...+....+.+..|..| +.++++|. .|.|.+|....++.
T Consensus 742 --~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 742 --YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred --hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 01111222345666666655454444433223334445558877 78888874 26789998887444
Q ss_pred EEEecCC--CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001490 812 ILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889 (1068)
Q Consensus 812 ~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iw 889 (1068)
++....+ .+.+.++..- +|++||. -...|++|+..+++.++.-..|..++..+...-.|..++.|.--+.+.+-
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 4443322 2344444332 6777763 45689999999987777777788999999999999999999888887776
Q ss_pred ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECC
Q 001490 890 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 941 (1068)
Q Consensus 890 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~ 941 (1068)
..+..+.......+.. + +.+.+++.+-.+..++.+-.++.+++...+
T Consensus 896 ~y~~~eg~f~evArD~--~---p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 896 QYKGDEGNFEEVARDY--N---PNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEeccCCceEEeehhh--C---ccceeeEEEecCceEEeecccccEEEEEec
Confidence 6665441111111111 1 147889999999999888777777776554
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.98 E-value=1.6e-07 Score=92.29 Aligned_cols=206 Identities=18% Similarity=0.154 Sum_probs=140.1
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEccCc--eeEE---EecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee
Q 001490 783 CFALSKNDAYLFSASGGVISLYIVMTF--KTIL---TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 857 (1068)
Q Consensus 783 ~l~~s~dg~~l~~~~dg~i~iwd~~~~--~~~~---~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 857 (1068)
.++.++||+.||+.-|..|.|-..++. ..+. ..+.....=+.++||| |+.+||.+...|+|++||+...++ ..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EE
Confidence 367889999999999999888876542 1222 2233344568999999 999999999999999999985433 23
Q ss_pred ecc-------cccCeEEEEEcCCC------CEEEEEeCCCcEEEEECCCCc---eeeeeeeecCCCcccCCCCceEEEEe
Q 001490 858 LEG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWG---IQTCRSLQTPDGVMTLAPSETHIQFH 921 (1068)
Q Consensus 858 ~~~-------h~~~V~~l~~spdg------~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s 921 (1068)
+.. -...|..|.|.+-. ..|+....+|.++=+-+..+. ......+.....+. ..|.++.+.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~ 156 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYH 156 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEc
Confidence 322 23567777776432 245566778888777764321 11112222222222 479999999
Q ss_pred eCCCEEEEEe-----C-------CeEEEEECCCceeeee--------------------ec--------cCCCcCEEEEE
Q 001490 922 KDQTRFLLVH-----E-------THLAIYEAEELTCLKQ--------------------WF--------PISSVPISQAT 961 (1068)
Q Consensus 922 pdg~~la~~~-----d-------~~i~vwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~ 961 (1068)
|..++|++++ + -.+..|.+-++..-.. +. ......|..|.
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 9999988741 1 1366676543221100 00 11267889999
Q ss_pred EecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490 962 FSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 962 fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 993 (1068)
.||||+.||+...+|.|.+|++.+..+...+.
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 99999999999999999999999999998877
No 282
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=4e-08 Score=108.39 Aligned_cols=506 Identities=12% Similarity=0.121 Sum_probs=261.8
Q ss_pred CceEEEEcCCCCeEEEEEcC----cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490 312 SPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 387 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l 387 (1068)
.-+...|+|... ++|+++. .|+|.||- ++|++-+..++ + -.+++++|+|..-.|
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-----------------P---~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY-----------------P---VHATSLCWHPEEFVL 74 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc-----------------c---eehhhhccChHHHHH
Confidence 344568999987 7787764 47888885 56665443221 1 135569999999999
Q ss_pred EEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE--eccC--CCc
Q 001490 388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAP 463 (1068)
Q Consensus 388 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h--~~~ 463 (1068)
|.|-.-|.+.+|...+.+.-. ....|..+|.-+.||++|. .++++..-|.+.+|....-..++. +..| ...
T Consensus 75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ 149 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ 149 (1416)
T ss_pred hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhce
Confidence 999999999999988754322 3457999999999999999 899999999999998663222221 1122 233
Q ss_pred EEEEeeeecCCcc------EEEEEEcCCcEE-EEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001490 464 VYSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 536 (1068)
Q Consensus 464 v~~i~~~~~~~~~------~l~s~s~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 536 (1068)
++-++|.-..++. ..+..+++..+- .++++......... -.-.|+|..++.++. +|+|+-.
T Consensus 150 ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyv 217 (1416)
T KOG3617|consen 150 LTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYV 217 (1416)
T ss_pred eeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEE
Confidence 4445554333321 122333333322 33332111111100 012367777777765 4557666
Q ss_pred eCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEc-CC----------------------------Ce
Q 001490 537 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NK----------------------------VQ 587 (1068)
Q Consensus 537 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~----------------------------~~ 587 (1068)
|- .|+......... . ..+-|.+...-+++.-++-.+.++-. .+ |-
T Consensus 218 dq-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv 291 (1416)
T KOG3617|consen 218 DQ-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV 291 (1416)
T ss_pred cC-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence 63 344333332211 1 11122222222222222222221111 01 10
Q ss_pred E--EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCce----------eeeccccccceeeeEEcCCcccc
Q 001490 588 L--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVT 655 (1068)
Q Consensus 588 ~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~ 655 (1068)
+ -..+.. .....+.+++++..+..+..|...|.+.+|.-..... +...+...+.|..+.|.|..+.+
T Consensus 292 Lr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~ 370 (1416)
T KOG3617|consen 292 LRKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTA 370 (1416)
T ss_pred ccCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchh
Confidence 0 000111 1124588999999999999999999999997543311 11222333455556665544443
Q ss_pred ccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEE
Q 001490 656 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 735 (1068)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 735 (1068)
++.+....+.+.... .+ ..|.....++.-+.++-.|..+.
T Consensus 371 avn~~~~v~ll~E~~-----l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~------ 410 (1416)
T KOG3617|consen 371 AVNTEEDVVLLGENS-----LT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT------ 410 (1416)
T ss_pred hhhhhhheeeeccCc-----hH-----------------------------HHHhhhhHHhhhcCCceEEEeec------
Confidence 333222222210000 00 00111111111111111111110
Q ss_pred EEeccCCccCCCccceeccCCcccCCCCCCc-eeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeE--
Q 001490 736 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-- 812 (1068)
Q Consensus 736 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~-- 812 (1068)
+|.. ... ..-++..++.+ ...|++..+.+|..|++.+....
T Consensus 411 ---------------------------sGv~~~l~-------~~~~~~gi~l~--e~~lvvwNgr~v~~y~lq~SG~la~ 454 (1416)
T KOG3617|consen 411 ---------------------------SGVSQDLK-------LSIPSAGICLG--EKQLVVWNGRTVVTYDLQTSGSLAT 454 (1416)
T ss_pred ---------------------------cchhhhhh-------hccchhhheec--cceEEEEcCceEEEEEecccchhHH
Confidence 0100 000 11223344443 34566666788889998632211
Q ss_pred EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee--ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490 813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 813 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd 890 (1068)
..........+.+++. +.++...++.+ |.++.+. |..... +..-.+.|.-+.++ |.+++.....+.++-+|
T Consensus 455 ~~~~tF~cet~~la~~--nqN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~d 527 (1416)
T KOG3617|consen 455 IQCTTFSCETTSLAIV--NQNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLD 527 (1416)
T ss_pred HhhhhhccccchHhHh--hcceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhh
Confidence 1111222344455555 34455555554 5555444 332222 23334555555554 78999988888888899
Q ss_pred CCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE---EeC----CeEEEEECCCceee
Q 001490 891 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 946 (1068)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~---~~d----~~i~vwd~~~~~~~ 946 (1068)
+...+...........+.....+.+..+..+..|.-+.+ ..+ .++.+||.++++..
T Consensus 528 vsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 528 VSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 887665544344444444444466778888877766554 233 46999999887654
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=4.4e-09 Score=110.02 Aligned_cols=294 Identities=10% Similarity=0.126 Sum_probs=185.3
Q ss_pred eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCC-CcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490 302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~ 380 (1068)
.+..+.||+..|..++--.+.+. +++++.|++|++|.++. |..+.+ ..|.. .+..|+.+|..+.|
T Consensus 727 rL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQf-----TY~aHkk~i~~igf 792 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQF-----TYQAHKKPIHDIGF 792 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceeee-----EhhhccCcccceee
Confidence 34567899999999876555553 58999999999999964 332221 11211 26679999999999
Q ss_pred CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCC-CCcEEEEEEeCCCcEEEEECCCCceeeEec-
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE- 458 (1068)
Q Consensus 381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 458 (1068)
-.|-++++++ ||.|.+||.--|..+.+...-..| +.+..+..-++ .+.++++.++...+|+++|.+.++-...++
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9999999877 778999999877765533222222 22333333333 344355555889999999999887665553
Q ss_pred ----cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490 459 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 534 (1068)
Q Consensus 459 ----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 534 (1068)
+..+.++++++.+ .|..++.+-..|.|.+.|.+++...-.+.........++- |..+.++.... +..+.
T Consensus 870 cna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sal----dHsla 942 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSAL----DHSLA 942 (1034)
T ss_pred ccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcc----cceeE
Confidence 3456678888866 5669999999999999999988876655544333322322 44455554432 44466
Q ss_pred E-EeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC----CeEEEEEeCCCCCCCCceEEEecC
Q 001490 535 E-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNKN 609 (1068)
Q Consensus 535 ~-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~ 609 (1068)
+ |....|....+.+... .+..- .-.-|..++++...+.+.+|--.. ...+..+....-....++++.-|-
T Consensus 943 VnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen 943 VNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred eeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence 6 8777776554444333 11111 112245667766666677773211 122223332222233567777776
Q ss_pred CCEEEEEECCCeEEE
Q 001490 610 GTLLAVIANENRIKI 624 (1068)
Q Consensus 610 ~~~l~~~~~dg~i~i 624 (1068)
+.-+..|...|.|.+
T Consensus 1018 N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhccCCCCceee
Confidence 666777777787765
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=3.2e-09 Score=126.14 Aligned_cols=201 Identities=15% Similarity=0.249 Sum_probs=160.3
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEEC
Q 001490 369 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 448 (1068)
Q Consensus 369 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 448 (1068)
..|-..|.++.=+|...+.++|+.||.|++|....+..+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345678899999999999999999999999999998877655443 33 8899999999999 6777888999999996
Q ss_pred CCCceeeEeccCCCcEEEEeeeecCCccEEEEEE---cCCcEEEEeCCCCCc-eEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490 449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCG 524 (1068)
Q Consensus 449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~ 524 (1068)
. .+.....+.|......+.|.. ..+++++ .++.+.+||..-... -.....|.+.++++++.|..+.+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 5 666677788998888887754 3566653 567899998643322 233378889999999999999999998
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC
Q 001490 525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 595 (1068)
Q Consensus 525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 595 (1068)
. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+..++..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 7 55699999988777655543 33 4578999999999999999988888777643
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.94 E-value=1.5e-07 Score=91.81 Aligned_cols=198 Identities=15% Similarity=0.109 Sum_probs=134.1
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEccCcee--EEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcC-Cceeee
Q 001490 781 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 856 (1068)
Q Consensus 781 v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 856 (1068)
..++.|++.+..++++. +|.+.+-+...... ++..+.|.-++....|+..+.+++.+|++|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45678888888888775 68888555544433 347888999999999998788899999999999999998 344444
Q ss_pred e-ecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC--CEEEEEeC
Q 001490 857 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHE 932 (1068)
Q Consensus 857 ~-~~~h~~~V~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~d 932 (1068)
. .+.|...|.++.-+| ++.+++||+.|..|++||..+-.. ++. . ....+.|..+..+|.- ++|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----Pl~--~--~~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----PLF--K--AKVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC----ccc--c--CccccceEEEEecchhhhHHHHHHHh
Confidence 4 456888999998886 578999999999999999986321 111 1 1122579999999864 34555555
Q ss_pred CeEEEEECCCceee----eeeccCCCcCEEEEEEecCCCEEEEEE-CCCcEE-EEEcCCC
Q 001490 933 THLAIYEAEELTCL----KQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNL 986 (1068)
Q Consensus 933 ~~i~vwd~~~~~~~----~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~-vwd~~~~ 986 (1068)
+..+|.+...+..- ......|.+-...-.|......|+|++ .|+.++ +|-..++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 55666666544321 122334444444444433335677764 466644 6655444
No 286
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.93 E-value=1.8e-06 Score=97.20 Aligned_cols=213 Identities=10% Similarity=0.059 Sum_probs=125.4
Q ss_pred eCCeEEEEEccCceeEEEecCCCCCe-----EEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccccc-------C
Q 001490 797 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------R 864 (1068)
Q Consensus 797 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~-------~ 864 (1068)
.++.+..+|.++|+.+.......... .+.+.. ++ .++.++.+|.+..+|..+|+.+........ .
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 36778888888888777665321111 112222 23 466678899999999999987655431100 0
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCC
Q 001490 865 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 942 (1068)
Q Consensus 865 V~~l~~sp--dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~ 942 (1068)
...+.-+| .+..+..++.+|.+..+|..+++..-...+ +. ...+.. .++..++.+.++.+..+|..+
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~------~~~~~~-~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----GS------VNDFAV-DGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----CC------ccCcEE-ECCEEEEEcCCCeEEEEECCC
Confidence 11111122 245666777899999999998874322111 11 111111 244444557889999999999
Q ss_pred ceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEE
Q 001490 943 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1022 (1068)
Q Consensus 943 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1022 (1068)
|+.+-...........+... .+.+|+.++.||.+.+.|..+|+.+.+..... ..+...-+ +. ++.|
T Consensus 314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~P~-~~---~~~l 379 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSEPV-VA---DDKL 379 (394)
T ss_pred CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeCCE-EE---CCEE
Confidence 97654311111111222222 24567788999999999999999998876211 11111101 11 3689
Q ss_pred EEEeCCCcEEEEeCC
Q 001490 1023 AVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 1023 ~~~~~dg~i~~w~~~ 1037 (1068)
++++.||.|+.++.+
T Consensus 380 ~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 380 LIQARDGTVYAITRP 394 (394)
T ss_pred EEEeCCceEEEEeCC
Confidence 999999999998763
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=6e-07 Score=100.18 Aligned_cols=218 Identities=10% Similarity=0.014 Sum_probs=134.9
Q ss_pred eEEEEEccCceeEEEecCCCCCeEEEEEeCCCCC-EEEEEECC---CeEEEEEcCCceeeeeecccccCeEEEEEcCCCC
Q 001490 800 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 875 (1068)
Q Consensus 800 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 875 (1068)
.|.+-|..... .+.+... +.+....||| ||+ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 35555554333 3333333 3778899999 776 46654443 479999999887544333 455566788999998
Q ss_pred EEEEE-eCC--CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCC----eEEEEECCCceeeee
Q 001490 876 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 948 (1068)
Q Consensus 876 ~l~s~-s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~----~i~vwd~~~~~~~~~ 948 (1068)
.|+.. +.+ ..|.++|+.+++.. .+....+ ......|||||+.|+...+. .|+++|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77654 333 46888888876522 2222222 12345799999999875443 699999988877554
Q ss_pred eccCCCcCEEEEEEecCCCEEEEEECC---------CcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCC
Q 001490 949 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1019 (1068)
Q Consensus 949 ~~~~h~~~v~~l~fs~dg~~l~t~~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1019 (1068)
...+. ....|||||++|+..+.. ..|.+.|+.+++.. .+... . . -...+|+| ||
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence 33222 124899999999877654 26888899888753 23211 0 0 11367999 67
Q ss_pred CEEEEEeCC-CcEEEEeCCCCCCCCccCC
Q 001490 1020 TQFAVGLTN-GEVYVIEPNEPGDTWAVLP 1047 (1068)
Q Consensus 1020 ~~l~~~~~d-g~i~~w~~~~~~~~~~~~~ 1047 (1068)
+.++....+ +.-.+|-++-.+..-..+|
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 777666554 4444555554553333343
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=5.3e-09 Score=109.47 Aligned_cols=289 Identities=13% Similarity=0.096 Sum_probs=182.7
Q ss_pred EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC-------CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC
Q 001490 412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD 484 (1068)
Q Consensus 412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d 484 (1068)
.+.||...|..++-..+.+ -+++++.|++|++|.++ +..+..+++.|..+|.++.|.. +-++ .++-|
T Consensus 730 nf~GH~~~iRai~AidNEN--SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~--~lr~--i~ScD 803 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNEN--SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA--DLRS--IASCD 803 (1034)
T ss_pred cccCcHHHhHHHHhccccc--ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee--ccce--eeecc
Confidence 5779999999887666655 69999999999999876 3346778899999999998865 3233 45668
Q ss_pred CcEEEEeCCCCCceEEec--CCCCcEEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc--ccccCCeE
Q 001490 485 GKIKAWLYDSLGARVDYD--APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL--QLQHNSVS 558 (1068)
Q Consensus 485 g~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--~~~~~~v~ 558 (1068)
|-|++||.-.++...... ...+.+..+..-+ +...++++.. .+.+|+++|.+.++....++.- ...+..++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs---aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS---AESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc---chhhheeeecccccceeeEEeccCCCCchhee
Confidence 999999976655543221 1222223333323 3334443322 2667999999988776665533 22346789
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEE-EECCCCceeeecc
Q 001490 559 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI-LETPESNSVDAAG 637 (1068)
Q Consensus 559 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~ 637 (1068)
+++..+.|++++++-.+|.|.+.|.++|+.+.....-.- ....++ .|..+.++....|.++.+ |..-++......+
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 999999999999999999999999999998876642211 112222 244556777777888888 8777665444443
Q ss_pred ccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEE
Q 001490 638 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 717 (1068)
Q Consensus 638 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 717 (1068)
...++..-+ ..-|..++++.....+.+|.-............+....-.+..++++
T Consensus 958 pppepahfl------------------------qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala 1013 (1034)
T KOG4190|consen 958 PPPEPAHFL------------------------QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALA 1013 (1034)
T ss_pred CCCcchhhh------------------------hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceee
Confidence 222211000 11234455555555566664221111111111222223445677888
Q ss_pred EecCCceEEEeecCccEEE
Q 001490 718 YNNGGQAIFALASNGVHLM 736 (1068)
Q Consensus 718 ~s~~g~~l~~~~~dg~i~i 736 (1068)
.-|-...+++|...|.|.+
T Consensus 1014 ~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1014 PLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eccccchhhccCCCCceee
Confidence 8887777888888887765
No 289
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.90 E-value=6.9e-09 Score=123.44 Aligned_cols=226 Identities=13% Similarity=0.174 Sum_probs=169.1
Q ss_pred CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc-CCC
Q 001490 384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 462 (1068)
Q Consensus 384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~ 462 (1068)
++.++....++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.+++|....++.+..++. -..
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444555555565554432 2334566788888888888 899999999999999999988877642 337
Q ss_pred cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490 463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 542 (1068)
Q Consensus 463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 542 (1068)
.|+.+.|+. .|..+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||..-..
T Consensus 2253 ~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFNH--QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhcc--cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 788888865 66688899999999999876 555667777877777777765 66777776555 6789999965321
Q ss_pred e-eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001490 543 I-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 621 (1068)
Q Consensus 543 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 621 (1068)
. -..-..|. +.++++++.|..+.+++|+.+|.|++||++..++++.++. +. ...++++++..|.
T Consensus 2327 ~~s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2327 MNSLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred ccceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence 1 11114555 8899999999999999999999999999998888776653 23 4568999999999
Q ss_pred EEEEECCCCceeeecc
Q 001490 622 IKILETPESNSVDAAG 637 (1068)
Q Consensus 622 i~iwd~~~~~~~~~~~ 637 (1068)
++||++..-..+..+.
T Consensus 2392 ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eEEEEccccchhhcCc
Confidence 9999999876666554
No 290
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.89 E-value=0.00042 Score=79.66 Aligned_cols=580 Identities=11% Similarity=0.102 Sum_probs=291.8
Q ss_pred EECCCCCEEEEEeCCcEEEEEEcc-CCCcccc---eEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490 379 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 454 (1068)
Q Consensus 379 ~~spdg~~las~~~d~~i~vwd~~-~~~~~~~---~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 454 (1068)
....+|...+.|..+|.+...-+. +++.... ....-+...-..|+..-++| +++.|+.-|.=++-.+.+-.-.
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 455678888888888877766555 4443322 11233445556777778777 5888887776666655433221
Q ss_pred -------eEeccCCCcEEEEeeeecC--CccEEEEEE---cCCcEEEEeCCCCCceE---EecCCCCcEEEE--------
Q 001490 455 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRM-------- 511 (1068)
Q Consensus 455 -------~~~~~h~~~v~~i~~~~~~--~~~~l~s~s---~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~-------- 511 (1068)
.++. .-+||..+++.... .+..+++++ .||++|+..-.-+-... .+.+ -..+..+
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~ 418 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY 418 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence 2332 44688888765433 334555554 57888876422111100 1111 0111111
Q ss_pred ---------------------------EEccCCCEEEEEeeCCCC-----ceeEEEEeCCCCeeeeEEeccccccCCeEE
Q 001490 512 ---------------------------AYSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 559 (1068)
Q Consensus 512 ---------------------------~~s~d~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 559 (1068)
.|+.+.+.+++....++. ...|++++-. .....+... ..++.
T Consensus 419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~ti 492 (1096)
T KOG1897|consen 419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKITI 492 (1096)
T ss_pred CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceEE
Confidence 122223333332221110 1113333322 111112211 23333
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecC--C----CEEEEEECCCeEEEEEC-CCCce
Q 001490 560 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILET-PESNS 632 (1068)
Q Consensus 560 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iwd~-~~~~~ 632 (1068)
...+.+...++.++.++.+...++..+.+ .....+.-...|.|+.++|- + +++++|..+..+.+.-. ++...
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 44444555777777777777777776663 22222222345888989873 2 37888877665554433 22222
Q ss_pred eeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCC--cccceeecCCcccc
Q 001490 633 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKA 710 (1068)
Q Consensus 633 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~ 710 (1068)
+.........+ |. ++.+... ..|..+|.++..||.+.-+-++.... ...... .-..
T Consensus 572 ~~~~~l~~~~i------PR-----------SIl~~~~-e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~----~lGt 629 (1096)
T KOG1897|consen 572 ITHEQLSGEII------PR-----------SILLTTF-EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV----TLGT 629 (1096)
T ss_pred eeeeccCCCcc------ch-----------heeeEEe-eccceEEEEEcCCceEEEEEEEcccceEcccccc----ccCC
Confidence 21111100000 00 1111000 23477888888888877665543221 111100 0123
Q ss_pred ccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeE-EEEec-
Q 001490 711 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSK- 788 (1068)
Q Consensus 711 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~- 788 (1068)
.++.--.|+..++.-+.+.+|.-..+|..+. ..++....++ .+.. ..|+.
T Consensus 630 ~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~----------------------kLv~spls~k------ev~~~c~f~s~ 681 (1096)
T KOG1897|consen 630 QPISLRTFSSKSRTAVFALSDRPTVIYSSNG----------------------KLVYSPLSLK------EVNHMCPFNSD 681 (1096)
T ss_pred CCcEEEEEeeCCceEEEEeCCCCEEEEecCC----------------------cEEEeccchH------Hhhhhcccccc
Confidence 3444445555554444444443333332111 0001111111 1111 11222
Q ss_pred -CCCEEEEEeCCeEEEEEccCcee--EEEecCCCCCeEEEEEeCCCCCEEEEEECC--------------CeEEEEEcCC
Q 001490 789 -NDAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARS 851 (1068)
Q Consensus 789 -dg~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------g~v~iwd~~~ 851 (1068)
-...++++..+.+++.-+..-+. ++++. -......+++.+ ....+++.+.- ..++++|-.|
T Consensus 682 a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 682 AYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred cCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence 23457777777777776654332 23322 223445556654 33444433221 1466777666
Q ss_pred ceeeeeecc-cc---cCeEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCceeeeeeeecCCCcccCCCCce
Q 001490 852 SEVISKLEG-HS---KRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 916 (1068)
Q Consensus 852 ~~~~~~~~~-h~---~~V~~l~~spd-g~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 916 (1068)
-+.+...+- .. -.|.++.|..| +.++++|.. .|.|.++.+......+ .+.. +.. .+.+.
T Consensus 760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~--~v~e---~~v-~Gav~ 833 (1096)
T KOG1897|consen 760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE--LVAE---TVV-KGAVY 833 (1096)
T ss_pred eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee--eeee---eee-cccee
Confidence 554433221 11 23455568888 778887752 4667777776622111 1111 100 01222
Q ss_pred EEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc--EEEEecc
Q 001490 917 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCRILS 994 (1068)
Q Consensus 917 ~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~--~~~~~~~ 994 (1068)
++. --+|+ ++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|..=+++.+-.....+ ..-..+
T Consensus 834 aL~-~fngk-llA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr- 909 (1096)
T KOG1897|consen 834 ALV-EFNGK-LLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR- 909 (1096)
T ss_pred ehh-hhCCe-EEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-
Confidence 221 12344 4555667899999998876664 55678899999999999999999887877766555443 432222
Q ss_pred ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 001490 995 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1042 (1068)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~ 1042 (1068)
...+-|..++.+- +.+.++.+..+|.+++-..+.....
T Consensus 910 --------D~~p~Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~t 947 (1096)
T KOG1897|consen 910 --------DYNPNWMTAVEIL--DDDTYLGAENSGNLFTVRKDSDATT 947 (1096)
T ss_pred --------hhCccceeeEEEe--cCceEEeecccccEEEEEecCCCCc
Confidence 1223455666666 4688999999999999888754433
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.85 E-value=3.7e-06 Score=85.83 Aligned_cols=233 Identities=16% Similarity=0.157 Sum_probs=154.4
Q ss_pred eEEEEcCCCCeEEEEEcCcCc-EEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE--
Q 001490 314 MSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-- 390 (1068)
Q Consensus 314 ~~v~~spdg~~lla~gs~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~-- 390 (1068)
-.++.+|+....++.+-.-|+ ..+||..+|+.+....- -....+.|| -.||+||++|.+.
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-----------~~gRHFyGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-----------PPGRHFYGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------CCCCEEecC------EEEcCCCCEEEEecc
Confidence 357899966668888877665 88999999988764110 111124444 5799999999987
Q ss_pred ---eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe----------------CCCcEEEEECCCC
Q 001490 391 ---YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------------DDKTIKVWDAVTG 451 (1068)
Q Consensus 391 ---~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~----------------~d~~i~iwd~~~~ 451 (1068)
...|.|-|||...+ ++...++..|.-.-..+.+.|||+.++++-|+ .+.++...|..+|
T Consensus 71 d~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred ccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 34578999999832 44555777777777789999999854444443 1335667788899
Q ss_pred ceeeE--e--ccCCCcEEEEeeeecCCccEEEEEEcCCc-------EEEEeCCCCCceEEec-------CCCCcEEEEEE
Q 001490 452 SRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYD-------APGLGCTRMAY 513 (1068)
Q Consensus 452 ~~~~~--~--~~h~~~v~~i~~~~~~~~~~l~s~s~dg~-------i~vwd~~~~~~~~~~~-------~~~~~i~~~~~ 513 (1068)
+.+.. + .-|...|..+++.. +|..++..-..|. |-+++.. +....+. .-.+-+-+|++
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred ceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEE
Confidence 88766 4 33778899998865 5545544433332 3333322 2222222 22346889999
Q ss_pred ccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEE
Q 001490 514 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 579 (1068)
Q Consensus 514 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 579 (1068)
++++.++++.+. ..+.+.+||..+++.+....-. .+..++-.+++ ++ ..+..|.+.
T Consensus 225 ~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~-f~-~ssG~G~~~ 280 (305)
T PF07433_consen 225 DRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG-FL-VSSGQGQLI 280 (305)
T ss_pred eCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc-eE-EeCCCccEE
Confidence 999999887764 2557999999999988776653 46777776666 44 444445533
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=3.9e-06 Score=85.67 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=142.4
Q ss_pred eEEEEec-CCCEEEEEe-CC-eEEEEEccCceeEEEecCCCCCe--EEEEEeCCCCCEEEEEEC-----CCeEEEEEcC-
Q 001490 782 PCFALSK-NDAYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR- 850 (1068)
Q Consensus 782 ~~l~~s~-dg~~l~~~~-dg-~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~-----dg~v~iwd~~- 850 (1068)
..++.+| ++..++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 4678888 556666666 34 58999999999998877655432 3578999 8999887543 4799999999
Q ss_pred CceeeeeecccccCeEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceeeeeeeecCCCcccCC
Q 001490 851 SSEVISKLEGHSKRVTGLVFSDALNILVSSG------------------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 912 (1068)
Q Consensus 851 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 912 (1068)
+.+.+..+..|.-.--.+.+.|||+.|+.+- .+..+..-|..+++......+......
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~---- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ---- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc----
Confidence 6678888887776677789999998888752 123455666677664443333222122
Q ss_pred CCceEEEEeeCCCEEEEEe-C---C----eEEEEECCCceeeeeec----cCCCcCEEEEEEecCCCEEEE-EECCCcEE
Q 001490 913 PSETHIQFHKDQTRFLLVH-E---T----HLAIYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFT-SFVDGTLS 979 (1068)
Q Consensus 913 ~~v~~~~~spdg~~la~~~-d---~----~i~vwd~~~~~~~~~~~----~~h~~~v~~l~fs~dg~~l~t-~~~dg~v~ 979 (1068)
..+..+++.++|..++... . + -+.+++....-...... ..-...+-+|+++.+|.++++ +-.-+++.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 2699999999999877631 1 1 25555543321111100 112578999999999987754 44668899
Q ss_pred EEEcCCCcEEEEec
Q 001490 980 IHEASNLEVQCRIL 993 (1068)
Q Consensus 980 vwd~~~~~~~~~~~ 993 (1068)
+||..+++++....
T Consensus 243 ~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 243 VWDAATGRLLGSVP 256 (305)
T ss_pred EEECCCCCEeeccc
Confidence 99999999996655
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=5.3e-08 Score=99.38 Aligned_cols=165 Identities=20% Similarity=0.166 Sum_probs=115.0
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 391 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~ 391 (1068)
.++.+..+|+++ ++|++..+....++++..... ..+.++.. . -...-.++.|-.+......+.
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~-----------~-v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS-----------C-VPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe-----------e-cccCcceeeeeeccceEEEEe
Confidence 556677888886 788888888877777654432 11111110 0 112233444555555555543
Q ss_pred ---CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEE
Q 001490 392 ---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 467 (1068)
Q Consensus 392 ---~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i 467 (1068)
....+.+|....+.+. .+-||-..++.++|+||++ +++++..|..|++-.......+..+ -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 4445666666654432 3459999999999999999 8999999999999887766656554 5799999999
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 502 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 502 (1068)
+..+ +..|+++|.|++|++||+.+++....+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9753 4579999999999999999988775443
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.80 E-value=7.9e-06 Score=92.01 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=93.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCC--cEE-----EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC
Q 001490 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 505 (1068)
Q Consensus 433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 505 (1068)
.++.++.++.+.-+|..+|+.+.+...... ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466777788999999999998876643220 000 0000011133467788899999999999999887766544
Q ss_pred CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccc--CCeEEEEEecCCCEEEEEECCCeEEEEEc
Q 001490 506 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 583 (1068)
Q Consensus 506 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 583 (1068)
....+..+ .++ .++.+.. ++.++-+|..+|+.+-.+....... ....+-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 22211122 234 4444432 5679999999999887765432000 00011111 1346777888999999999
Q ss_pred CCCeEEEEEe
Q 001490 584 NKVQLLTTID 593 (1068)
Q Consensus 584 ~~~~~~~~~~ 593 (1068)
.+|+.+-...
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988765543
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.79 E-value=3.8e-06 Score=82.77 Aligned_cols=212 Identities=15% Similarity=0.104 Sum_probs=133.5
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEEcCCc--eeeeeecc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001490 825 LAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 899 (1068)
Q Consensus 825 l~~s~~d~~~lasg~~dg~v~iwd~~~~--~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~ 899 (1068)
++.++ +|++||+- .|..|.|-..++. ..+.+... ..-.-+.++||||+.+||.+...|+|+++|+.+.+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 56677 89888854 5777888766542 22233222 223457899999999999999999999999987553322
Q ss_pred eeeecCCCcccCCCCceEEEEeeCC-------CEEEEEeCCeEEEEECCCc-----eee--eeeccCCCcCEEEEEEecC
Q 001490 900 RSLQTPDGVMTLAPSETHIQFHKDQ-------TRFLLVHETHLAIYEAEEL-----TCL--KQWFPISSVPISQATFSCD 965 (1068)
Q Consensus 900 ~~~~~~~~~~~~~~~v~~~~~spdg-------~~la~~~d~~i~vwd~~~~-----~~~--~~~~~~h~~~v~~l~fs~d 965 (1068)
..-....+ .....|..+.|-+-. .+|+...+|.++=|-+..+ +.. ..+...+...|.++.|.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 11111111 122467777776543 5566678887776665322 111 1222334789999999999
Q ss_pred CCEEEEEECC-----------CcEEEEEcCCCcEEEEeccccccCCCC-------------------ccCcccceEEEEC
Q 001490 966 CRMVFTSFVD-----------GTLSIHEASNLEVQCRILSTAYLRPTT-------------------SCLHVYPHAIAAH 1015 (1068)
Q Consensus 966 g~~l~t~~~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 1015 (1068)
-++|++||.. .-+..|.+-++.+-............. ....-....++.+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 8888877732 236778887776654432111000000 0001123457788
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001490 1016 PLKPTQFAVGLTNGEVYVIEPNEPGD 1041 (1068)
Q Consensus 1016 p~~~~~l~~~~~dg~i~~w~~~~~~~ 1041 (1068)
| |+..||+...+|.|.+|++|.-..
T Consensus 239 P-dg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 239 P-DGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred C-CCCEEEEEEcCCeEEEEecCcchh
Confidence 9 799999999999999999986543
No 296
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=6e-07 Score=99.38 Aligned_cols=300 Identities=15% Similarity=0.131 Sum_probs=170.2
Q ss_pred ceEEEEECCCCCEEEEEeC----CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC
Q 001490 374 SVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 449 (1068)
Q Consensus 374 ~V~~~~~spdg~~las~~~----d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 449 (1068)
.-+-.+|+|...++|+++. .|.|.||- ++|+..+.. +..- .+++++|+|..- +|+.|-.-|.+.+|...
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecC
Confidence 3344679999999998863 47788874 445533211 2222 356799999876 78889889999999987
Q ss_pred CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecC--CC--C--cEEEEEEccCCCEEE--
Q 001490 450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PG--L--GCTRMAYSANGRRLF-- 521 (1068)
Q Consensus 450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~--~--~i~~~~~s~d~~~l~-- 521 (1068)
+.+.-.....|..+|..+.|++ +|..++++..-|.|.+|..+-.+....... |. . ...+...++++.-++
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~l 167 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKL 167 (1416)
T ss_pred CceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhh
Confidence 7776666677999999999976 778999999999999998875443332211 11 1 233444566643221
Q ss_pred ---EEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCC
Q 001490 522 ---SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 598 (1068)
Q Consensus 522 ---~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 598 (1068)
+.+.+..+-....-|...+.. +... -.-.|+|..++.++.+|+|+--|- .|+.....+..+.
T Consensus 168 aKaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~- 232 (1416)
T KOG3617|consen 168 AKAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE- 232 (1416)
T ss_pred hhhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch-
Confidence 111111110011112111100 0000 112467888899999999988774 5666665554432
Q ss_pred CCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCC-CCCcccc
Q 001490 599 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPE 677 (1068)
Q Consensus 599 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 677 (1068)
..+-|.+-..-+++...+-++.++-...... ...+..+..+ +.. ...|. +
T Consensus 233 ---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~-------~ee~~~vk~s------------------gk~GgrqGg-i 283 (1416)
T KOG3617|consen 233 ---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGT-------SEERCAVKVS------------------GKLGGRQGG-I 283 (1416)
T ss_pred ---HHHHHhcccceEEEEeeeceeeEEEecCCCc-------hHHhhhhhhc------------------cccCCccCc-c
Confidence 3455666555555555554554443332100 0000000010 000 00111 2
Q ss_pred eeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEec
Q 001490 678 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 739 (1068)
Q Consensus 678 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 739 (1068)
+.+...|.++- ..... ......+.+++++..+..+.++...|.+.+|.-
T Consensus 284 A~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 284 ACSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLD 332 (1416)
T ss_pred ccccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeee
Confidence 22222221110 00000 114557999999999999999999999999963
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=8.1e-08 Score=98.08 Aligned_cols=159 Identities=9% Similarity=0.091 Sum_probs=114.4
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEEcCCcee----eeeecccccCeEEEEEcCCCCEEEEE---eCCCcEEEEECCCCc
Q 001490 823 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSS---GGDAQIFVWDVDGWG 895 (1068)
Q Consensus 823 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~s~---s~dg~i~iwd~~~~~ 895 (1068)
..+..++ ++++||++..+....++++..... +.... -...-+++.|..+......+ +....+.+|....+
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 3455666 889999998888877777764332 22222 12223444554444444443 44455566665542
Q ss_pred eeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEEC
Q 001490 896 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 974 (1068)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 974 (1068)
+....-||.. .+..++||||+++|+++ .|..|+|-.+..-..+..+.-||..-|..++.-++ ..|+++|.
T Consensus 143 -----~~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG 213 (390)
T KOG3914|consen 143 -----RCEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG 213 (390)
T ss_pred -----Ccchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence 2333456665 79999999999999995 78899999998888888888899999999998765 46999999
Q ss_pred CCcEEEEEcCCCcEEEEec
Q 001490 975 DGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 975 dg~v~vwd~~~~~~~~~~~ 993 (1068)
|++|++||+.+|+.+..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999886665
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.74 E-value=2.9e-05 Score=81.11 Aligned_cols=216 Identities=13% Similarity=0.138 Sum_probs=136.3
Q ss_pred EEEEec-CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEe-CCCCCEEEEEECCCeEEEEEcCCceeeeeec
Q 001490 783 CFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PHDNNVIAIGMDDSTILIYNARSSEVISKLE 859 (1068)
Q Consensus 783 ~l~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~ 859 (1068)
+++|.+ ++.++++-. .+.|..|+..+++... +.... ...+++. + ++.+++ +...+ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEcCc-eEEEecCCCcEEEEee
Confidence 578888 455444443 6889999998876643 22122 7778888 5 665555 45444 5666999886443332
Q ss_pred c-----cccCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE
Q 001490 860 G-----HSKRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 926 (1068)
Q Consensus 860 ~-----h~~~V~~l~~spdg~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 926 (1068)
. .....+.+++.|+|++.++.... |.|..++.. ++... ...... ....++|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~--~~~~~~-------~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV--VADGLG-------FPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE--EEEEES-------SEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE--EecCcc-------cccceEECCcchh
Confidence 2 34567889999999988886654 446666666 33221 222221 3578999999998
Q ss_pred EEE--EeCCeEEEEECCCcee----eeeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEecccccc
Q 001490 927 FLL--VHETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 998 (1068)
Q Consensus 927 la~--~~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~ 998 (1068)
|.+ +..+.|..|++..... ...+.... .+....+++..+|.+.++....+.|.+++.+ |+++..+....
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~-- 224 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV-- 224 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--
Confidence 876 3567788888863221 11121111 2348899999999988888888999999988 88887777221
Q ss_pred CCCCccCcccceEEEEC-CCCCCEEEEE
Q 001490 999 RPTTSCLHVYPHAIAAH-PLKPTQFAVG 1025 (1068)
Q Consensus 999 ~~~~~~~~~~~~~~~~~-p~~~~~l~~~ 1025 (1068)
-.+.+++|. |+...+++|.
T Consensus 225 --------~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 --------PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------SSEEEEEEESTTSSEEEEEE
T ss_pred --------CCEEEEEEECCCCCEEEEEe
Confidence 146678884 4333444443
No 299
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.74 E-value=9.9e-06 Score=83.67 Aligned_cols=207 Identities=15% Similarity=0.181 Sum_probs=135.7
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcC-Cceeee
Q 001490 781 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 856 (1068)
Q Consensus 781 v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 856 (1068)
...+++|.||+++.+.. ...|.|.|+...+.+.++..+. |.-.-|..++-+.+-+.||++.-..+. .|+...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 34578999999999987 4779999999999998887443 222222134567788899999999887 455432
Q ss_pred e----ecccccCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcc---c-CCCCceEEEEeeCCCEE
Q 001490 857 K----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRF 927 (1068)
Q Consensus 857 ~----~~~h~~~V-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~spdg~~l 927 (1068)
+ |..-.+++ ..-+++.++..++..+.+|.|+--|+.................. . -.+.-.-+++++...+|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 2 22222222 23345556666666889999999999887655444444332111 0 01345678999877766
Q ss_pred EE----EeCC-------eEEEEECCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCcEEEEec
Q 001490 928 LL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 928 a~----~~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~~ 993 (1068)
.+ +.++ .|.++|+.+++.+..+... .++.++..|.|.+ +|++.+ .++.+.+||..+|+.+..+.
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 65 2222 4888999999999886643 3577999999886 555544 57899999999999998887
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=2.1e-05 Score=82.21 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=140.2
Q ss_pred EEEEec-CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCE
Q 001490 715 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY 792 (1068)
Q Consensus 715 ~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~ 792 (1068)
+++|.+ ++..+++-...+.|..|+.... . .....+ .....+++. ++++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~-~~~~~~------~~~~G~~~~~~~g~- 53 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------E-VEVIDL------PGPNGMAFDRPDGR- 53 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------E-EEEEES------SSEEEEEEECTTSE-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------e-EEEEec------CCCceEEEEccCCE-
Confidence 567787 5655555556677777764432 1 111111 126778888 5654
Q ss_pred EEEEeCCeEEEEEccCceeEEEecC-----CCCCeEEEEEeCCCCCEEEEEECC--------CeEEEEEcCCceeeeeec
Q 001490 793 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE 859 (1068)
Q Consensus 793 l~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~v~iwd~~~~~~~~~~~ 859 (1068)
++++..+.+.++|..+++....... .....+.+++.| +|++.++.... |.|+.++.. ++......
T Consensus 54 l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 54 LYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp EEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred EEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 5555556667779988865443332 334678999999 88887776544 567777777 55443333
Q ss_pred ccccCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCc--eeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeE
Q 001490 860 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 935 (1068)
Q Consensus 860 ~h~~~V~~l~~spdg~~l~-s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i 935 (1068)
.-.....|+|+||++.|. +-+..+.|..+++.... ......+....... +..-.+++..+|++.++ ...+.|
T Consensus 132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence 345678999999998765 56677888888886422 33333332222221 13568999999998887 467899
Q ss_pred EEEECCCceeeeeeccCCCcCEEEEEEe-cCCCEEEEEE
Q 001490 936 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF 973 (1068)
Q Consensus 936 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~ 973 (1068)
.+++.+ |+.+..+..+ ...+++++|. +|.+.|+..+
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 999987 8877765554 4589999995 5656655443
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.73 E-value=1.5e-06 Score=83.74 Aligned_cols=147 Identities=11% Similarity=-0.041 Sum_probs=107.5
Q ss_pred eEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490 375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 454 (1068)
Q Consensus 375 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 454 (1068)
+.++++|+|++++++.+....|..|.+...............++.-.+..|+.... .+|++..||++.|||++.-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 78899999999999999999999999976544332223444555667889998888 7999999999999999864433
Q ss_pred e-----EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC--------cEEEEEEccCCCEEE
Q 001490 455 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLF 521 (1068)
Q Consensus 455 ~-----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~i~~~~~s~d~~~l~ 521 (1068)
. +-..|.+.++.+.|++.+--.+|+..-.-+.+++.|+++......+..... .+..-.|+.++.-+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 224589999999999765556777777788999999998776554333222 255555555555444
Q ss_pred EE
Q 001490 522 SC 523 (1068)
Q Consensus 522 ~~ 523 (1068)
+.
T Consensus 319 v~ 320 (344)
T KOG4532|consen 319 VK 320 (344)
T ss_pred cc
Confidence 43
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=1.1e-07 Score=103.62 Aligned_cols=294 Identities=13% Similarity=0.152 Sum_probs=187.4
Q ss_pred CcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEcccc--ccEEEEEEcCCCCcE-EEEEEeCCCcEEEEEC
Q 001490 372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVWDA 448 (1068)
Q Consensus 372 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~--~~v~~l~~s~d~~~~-~l~s~~~d~~i~iwd~ 448 (1068)
.+.+.++..+|.|+-+|.++..| +.+-|+...-. ...-+ .|. -.|-.+.|+|...+. .+|+.+ ...-.+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~--ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT--PPRWL-HHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCC--Cceee-eccCcchhcceecccCCCCceeEEecC-cchhhhhhh
Confidence 46788999999999999998888 56667764321 11111 232 356778888865432 455544 445668987
Q ss_pred CC---CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEEEEcc-CCCEEEEE
Q 001490 449 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSC 523 (1068)
Q Consensus 449 ~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-d~~~l~~~ 523 (1068)
.. ...-..+.+|...|+.+.|++. +...+++++.|-.++.||+++..... .+..-......+.|+- ++..+++.
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q-~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQ-HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCC-CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 63 2334567899999999999875 34589999999999999998866543 3333344556678876 45555554
Q ss_pred eeCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecC-CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCC
Q 001490 524 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 601 (1068)
Q Consensus 524 ~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 601 (1068)
. ...|.+||.+.| .++..+++|. ..|+.+.|..- ...+.+.+.||+|+.||.............. ..++
T Consensus 178 h-----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~pi 248 (1081)
T KOG0309|consen 178 H-----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPI 248 (1081)
T ss_pred c-----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCcc
Confidence 3 234999999865 5667777766 77888888653 3467788999999999987543222111111 1234
Q ss_pred ceEEEecCCC--EEEEEECCCeEEE---------EECCC-CceeeeccccccceeeeEEcCCccccccccccCeeeecCC
Q 001490 602 PRICFNKNGT--LLAVIANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 669 (1068)
Q Consensus 602 ~~v~~s~~~~--~l~~~~~dg~i~i---------wd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1068)
..-.+-|-|. .+.-.-.+..+.+ |+..+ .+++..+.||.+.|....|-..... .++
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~------------~~d 316 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC------------DGD 316 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc------------cCC
Confidence 5555555332 2211111123333 33333 3678888899888866655432211 111
Q ss_pred CCCCcccceeecccccceeeccc
Q 001490 670 PKEDVKPEISVEAENKSEVEKPL 692 (1068)
Q Consensus 670 ~~~~~~~l~s~~~d~~i~~wd~~ 692 (1068)
.....-.|++-+.|.++|+|-+.
T Consensus 317 ~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCccceeEEEeecCCceEeeecc
Confidence 12223468999999999999876
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.72 E-value=3.8e-06 Score=87.63 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=138.6
Q ss_pred CCeEEEEEccCceeEEEecCC--CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCC
Q 001490 798 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 875 (1068)
Q Consensus 798 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 875 (1068)
+|+|..||..+|+.+...... .....+.++. ++..+++++.++.++.||..+|+.+.++.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999999887542 2233322332 345677778999999999999998877664 22211111 22455
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCCeEEEEECCCceeeeeeccCCC
Q 001490 876 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 954 (1068)
Q Consensus 876 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~ 954 (1068)
.++.++.++.|+.+|..+++..-........... .........++..++++ .++.+..+|+.+|+.+-.......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6676778889999999998864431111111110 12233344447777775 489999999999998766433221
Q ss_pred c---------CEEEEEEecCCCEEEEEECCCc-EEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001490 955 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1024 (1068)
Q Consensus 955 ~---------~v~~l~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 1024 (1068)
. .+..-....++ .++.++.++. +.+ |+.+++.+.+.. ... .. . ...+ +++.|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence 1 11222233345 6777777885 555 999999763222 111 11 1 1223 4678888
Q ss_pred EeCCCcEEEEeCCCCCCCCc
Q 001490 1025 GLTNGEVYVIEPNEPGDTWA 1044 (1068)
Q Consensus 1025 ~~~dg~i~~w~~~~~~~~~~ 1044 (1068)
++.+|.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999987776664
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.1e-08 Score=113.27 Aligned_cols=215 Identities=15% Similarity=0.250 Sum_probs=158.1
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe--CCCcEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKV 445 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~i 445 (1068)
+..|...-+|++||-+.+.|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. +++.+ ..--..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 66788999999999999999999999999999999997655 56799999999999999994 44333 3335789
Q ss_pred EECCC-CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC----CCcEEEEEEccCCCEE
Q 001490 446 WDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRL 520 (1068)
Q Consensus 446 wd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~d~~~l 520 (1068)
|++.+ +...+++.+. .++.|+.. .+.-+.|+......+||+++.....++... ...-+...|+|+..++
T Consensus 1172 W~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99864 5556666532 34455432 234455555677899999998776653221 1234678899999888
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCC
Q 001490 521 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 600 (1068)
Q Consensus 521 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 600 (1068)
+--+ .+||++..+.++.|.... .. ..-.|+|.|..++.-++ |||+++.+.++..+.-.
T Consensus 1246 lndG---------vLWDvR~~~aIh~FD~ft---~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld---- 1303 (1516)
T KOG1832|consen 1246 LNDG---------VLWDVRIPEAIHRFDQFT---DY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD---- 1303 (1516)
T ss_pred eeCc---------eeeeeccHHHHhhhhhhe---ec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----
Confidence 7522 579999888888776654 22 23459999999999876 99999999888776432
Q ss_pred CceEEEecCCCEEEE
Q 001490 601 NPRICFNKNGTLLAV 615 (1068)
Q Consensus 601 v~~v~~s~~~~~l~~ 615 (1068)
-..+.|+..|..++.
T Consensus 1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ceEEEeccCccchhh
Confidence 256888888876654
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=1.6e-07 Score=91.77 Aligned_cols=260 Identities=13% Similarity=0.186 Sum_probs=164.5
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceee---eeeeeeeccccccceeeeeecCCCcceEEEEECCCCC
Q 001490 309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 385 (1068)
Q Consensus 309 h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~ 385 (1068)
..+-|++|.|...|. +||+|...|.|.++.-+....-.. ..|+ .....|....--.-+..|..+.|..++.
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQ-----she~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-----SHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhc-----ccccchhhhhhccHHHHhhheeeecCCC
Confidence 345899999999997 679999999999998654331100 0111 0111111100111235788899887653
Q ss_pred --EEEEEeCCcEEEEEEccCCCc-------------------------c--------------cceEEE-ccccccEEEE
Q 001490 386 --LLGVAYSKHIVQLYAYHGGSD-------------------------A--------------RQQLEI-DAHVGNVNDL 423 (1068)
Q Consensus 386 --~las~~~d~~i~vwd~~~~~~-------------------------~--------------~~~~~~-~~h~~~v~~l 423 (1068)
.++..+.|++|++|.+..... + .+.+.. ..|..-|.++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 344556899999999854310 0 000011 3577788999
Q ss_pred EEcCCCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCC-----CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCC
Q 001490 424 AFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHG-----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 495 (1068)
Q Consensus 424 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 495 (1068)
.|..|.. .++++. |=.|.+|+++-... +..++.|. ..|++..|+|... ..+...+..|.|++-|++..
T Consensus 179 S~NsD~e--t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 179 SFNSDKE--TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eecCchh--eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhh
Confidence 9999988 566654 77899999864322 22333343 4577778887643 46677788899999998732
Q ss_pred Cc-----e-E--Ee--------cCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEecccc------
Q 001490 496 GA-----R-V--DY--------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQL------ 552 (1068)
Q Consensus 496 ~~-----~-~--~~--------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~------ 552 (1068)
.. . . .+ ......|..+.|+++|+++++-. -.++.+||++.. .++.+..-|..
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHHH
Confidence 21 1 1 11 11123678899999999999854 457999999854 45555544331
Q ss_pred ---ccCCe---EEEEEecCCCEEEEEECCCeEEEEEc
Q 001490 553 ---QHNSV---SVVHFDTAKDQILAAGDDHVIKIWDM 583 (1068)
Q Consensus 553 ---~~~~v---~~~~~~~~~~~l~~~s~dg~i~iwd~ 583 (1068)
....| ..+.|+.|.+.+++|+..+..-++-.
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 11222 34778888899999998877777654
No 306
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.68 E-value=2.1e-05 Score=81.25 Aligned_cols=285 Identities=12% Similarity=0.136 Sum_probs=160.4
Q ss_pred eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE----------CCCeEEEEEcCCCeEEEEEeCCCC---
Q 001490 531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 597 (1068)
Q Consensus 531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 597 (1068)
++++++|..+++.+..+... -.-.+..+|+++.+++++ ..-.|.+||..+-.+...+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 36999999999988777763 345577899999998754 334689999999998887765432
Q ss_pred --CCCCceEEEecCCCEEEEEEC--CCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCC
Q 001490 598 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 673 (1068)
Q Consensus 598 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1068)
.......+++.|++++++..- ...|.|.|+..++.+..+....- .-+-|. +
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~--------------------~- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPS--------------------G- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEE--------------------E-
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEec--------------------C-
Confidence 123456789999998887643 46788999988877665542211 111110 1
Q ss_pred cccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceec
Q 001490 674 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 753 (1068)
Q Consensus 674 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 753 (1068)
.+.+.+.+.||++....++...........+-......-+..-+++..+..++-.+-+|.|+--++........
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~------ 220 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG------ 220 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE------
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc------
Confidence 12234445555555544442211111111111111222222334555555566677778777777655432111
Q ss_pred cCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CC-------eEEEEEccCceeEEEecCCCCCe
Q 001490 754 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GG-------VISLYIVMTFKTILTIMPPSPTA 822 (1068)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~i 822 (1068)
.-|...+.... .... ..+.-.-+++++..+.|.+.- ++ .|.++|+.+++++.++.. ...+
T Consensus 221 ---~~~~~~t~~e~-~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~ 291 (342)
T PF06433_consen 221 ---KPWSLLTDAEK-ADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI 291 (342)
T ss_dssp ---EEEESS-HHHH-HTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred ---CcccccCcccc-ccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence 11111110000 0000 112234567777665555431 11 388999999999999873 2457
Q ss_pred EEEEEeCCCCCEEEEEE-CCCeEEEEEcCCceeeeeecc
Q 001490 823 TSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG 860 (1068)
Q Consensus 823 ~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~~~~ 860 (1068)
.+++++.++.-+|.+.+ .++.+.+||..+|+.+.++++
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 79999995555666554 578999999999999988874
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.66 E-value=2.7e-07 Score=100.61 Aligned_cols=247 Identities=16% Similarity=0.273 Sum_probs=163.2
Q ss_pred CceEEEEcCCC--CeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-CCEEE
Q 001490 312 SPMSMDFHPVQ--HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLG 388 (1068)
Q Consensus 312 ~V~~v~~spdg--~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g~~la 388 (1068)
.|..+.|||.- .+. ++......-.+|++....-... ..++.||+..|+.+.|.|. -..||
T Consensus 69 ~vad~qws~h~a~~~w-iVsts~qkaiiwnlA~ss~~aI----------------ef~lhghsraitd~n~~~q~pdVla 131 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYW-IVSTSNQKAIIWNLAKSSSNAI----------------EFVLHGHSRAITDINFNPQHPDVLA 131 (1081)
T ss_pred hhcceecccCCCCcee-EEecCcchhhhhhhhcCCccce----------------EEEEecCccceeccccCCCCCccee
Confidence 45666777643 233 3334446677888854322211 1237799999999999996 56789
Q ss_pred EEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEE
Q 001490 389 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSL 467 (1068)
Q Consensus 389 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i 467 (1068)
+++.|..+..||+.+... ....+......-..++|+.... .+.+.+..+.|.+||...| .++..+++|...|+.+
T Consensus 132 tcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred eccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence 999999999999988642 2223334445567899987766 4555666778999999876 4678899999999999
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEe-cCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE---------Ee
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE---------WN 537 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~---------wd 537 (1068)
.|..... ..+.+.+.||+|+.||.+........ .....++..-.+.|-|.-...--.. |++.+.+ |+
T Consensus 208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~--G~n~v~~~~c~n~d~e~n 284 (1081)
T KOG0309|consen 208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV--GGNMVPQLRCENSDLEWN 284 (1081)
T ss_pred HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc--CCeeeeeccccchhhhhc
Confidence 8764322 36889999999999998765543322 2233355555666644432221111 1223333 33
Q ss_pred CCC-CeeeeEEeccccccCCeEEEEEecCC----------CEEEEEECCCeEEEEEcCC
Q 001490 538 ESE-GAIKRTYQGLQLQHNSVSVVHFDTAK----------DQILAAGDDHVIKIWDMNK 585 (1068)
Q Consensus 538 ~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~s~dg~i~iwd~~~ 585 (1068)
..+ .+.+..|.||. +.|....|-..+ -+|++-+.|.++++|-+..
T Consensus 285 ~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 285 VFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 333 35688899988 666665554322 3689999999999998754
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=8e-06 Score=85.22 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=132.8
Q ss_pred ccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEE
Q 001490 758 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 836 (1068)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 836 (1068)
.+|+.+|..+....+.. ......+. ..+++..++++ .++.+..||..+|+.+.++............ .+..++
T Consensus 7 ~~d~~tG~~~W~~~~~~--~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~ 80 (238)
T PF13360_consen 7 ALDPRTGKELWSYDLGP--GIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVY 80 (238)
T ss_dssp EEETTTTEEEEEEECSS--SCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEE
T ss_pred EEECCCCCEEEEEECCC--CCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccc
Confidence 34455565566555421 11222222 33355556565 4799999999999999887753221112222 334566
Q ss_pred EEECCCeEEEEEcCCceeeeee-cccc---cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCccc--
Q 001490 837 IGMDDSTILIYNARSSEVISKL-EGHS---KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT-- 910 (1068)
Q Consensus 837 sg~~dg~v~iwd~~~~~~~~~~-~~h~---~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-- 910 (1068)
+++.++.++.+|..+|+.+... .... ..........++..++.+..++.|..+|.++|+..-............
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence 6778889999999999988774 3221 112223333347888888889999999999988654433322221110
Q ss_pred CCCCceEEEEeeCCCEEEEEeCCe-EEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEE
Q 001490 911 LAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 989 (1068)
Q Consensus 911 ~~~~v~~~~~spdg~~la~~~d~~-i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~ 989 (1068)
....+..-....++..+++..++. +.+ |..+++.+-... ...+.. ....++..|+.++.++.|..||+.+|+.+
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 161 SFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 000122333333554444456665 555 999998653211 122222 25677888888889999999999999987
Q ss_pred EE
Q 001490 990 CR 991 (1068)
Q Consensus 990 ~~ 991 (1068)
.+
T Consensus 236 W~ 237 (238)
T PF13360_consen 236 WQ 237 (238)
T ss_dssp EE
T ss_pred eE
Confidence 54
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.62 E-value=6.6e-07 Score=87.66 Aligned_cols=258 Identities=13% Similarity=0.183 Sum_probs=161.6
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCce-----eEEEecCCCC------------CeEEEEEeCCC-CCEEEE
Q 001490 777 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPHD-NNVIAI 837 (1068)
Q Consensus 777 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~d-~~~las 837 (1068)
....|+++.|...|.||++|. +|.|.+|.-+... ....+++|.. .|..+.|-.+. ...+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 466799999999999999998 6889999865432 1223455542 45667765533 335556
Q ss_pred EECCCeEEEEEcCCcee-------------------------------------e----e-ee-cccccCeEEEEEcCCC
Q 001490 838 GMDDSTILIYNARSSEV-------------------------------------I----S-KL-EGHSKRVTGLVFSDAL 874 (1068)
Q Consensus 838 g~~dg~v~iwd~~~~~~-------------------------------------~----~-~~-~~h~~~V~~l~~spdg 874 (1068)
.+.|.+|++|.+..... + + .. ..|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999998743200 0 0 01 3467778899999998
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCc--ccCCCCceEEEEeeCCCEEEE--EeCCeEEEEECCCceee----
Q 001490 875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV--MTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCL---- 946 (1068)
Q Consensus 875 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~la~--~~d~~i~vwd~~~~~~~---- 946 (1068)
..++++ .|=.|.+|+++-..... .+-....+ ......|++..|+|..-.+.. ++.|.|++-|++.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sF--nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSF--NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeec-cceeeeeccccccCCce--EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 888875 46669999987532111 11111111 111135788999998655443 68899999999732211
Q ss_pred --ee---------eccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-cEEEEeccccccC----CCCccCccc-c
Q 001490 947 --KQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLR----PTTSCLHVY-P 1009 (1068)
Q Consensus 947 --~~---------~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~-~~~~~~~~~~~~~----~~~~~~~~~-~ 1009 (1068)
.. .+.+-...|..+.|+++|+|+++-+. -+|.+||+.-. .++..+..+..+. ...-++.++ -
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 10 11122567889999999999997654 58999999854 4454443111110 000122333 2
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490 1010 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus 1010 ~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
..+.|+. |...+++|+..+...++-...+
T Consensus 341 FeisfSg-d~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred EEEEecC-CcccccccccccceeeeccccC
Confidence 5678888 4577888888777777764333
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.61 E-value=1.5e-05 Score=89.09 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=119.4
Q ss_pred EEecCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC----eEEEEEcCCceeeeee
Q 001490 785 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKL 858 (1068)
Q Consensus 785 ~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~~ 858 (1068)
=++|||+.+...+ .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+. ++..-+..+...+..+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 3567888775555 4778899999988877766333 556789999 888888776322 2333322221111111
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE--eC
Q 001490 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE 932 (1068)
Q Consensus 859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~d 932 (1068)
.-.. + -++.++|++... .++.|.+.|..+ +. .....+.... ....+++||||++++++ .+
T Consensus 277 ni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 277 NIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred chHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCCC
Confidence 1000 0 134567887665 367799999887 22 1122333333 35679999999999984 57
Q ss_pred CeEEEEECCCcee------------eeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001490 933 THLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 985 (1068)
Q Consensus 933 ~~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~ 985 (1068)
.++.|.|+++.+. +.+... .......+|+++|....|-..|..|..||+..
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999987653 222222 33445778999999888899999999999987
No 311
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.61 E-value=7.8e-06 Score=78.92 Aligned_cols=191 Identities=10% Similarity=-0.028 Sum_probs=128.1
Q ss_pred EEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc-eee-e-eecccccCeEEEE
Q 001490 793 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVI-S-KLEGHSKRVTGLV 869 (1068)
Q Consensus 793 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~-~-~~~~h~~~V~~l~ 869 (1068)
+++..|.++++++++.+..........-.+.++++++ |++++++.+....|..|.+... +.+ . ....-++.-.+..
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 3333477788887765443322221222378999999 9999999999999999998753 322 2 2222344456789
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE--EEEE-eCCeEEEEECCCceee
Q 001490 870 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLV-HETHLAIYEAEELTCL 946 (1068)
Q Consensus 870 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--la~~-~d~~i~vwd~~~~~~~ 946 (1068)
|+.....+|++..||++.|||+..........-.. ...+.+.++.+.||+-|.+ |..+ .-+.+.|.|++++...
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst---rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST---RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhccc---CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 99999999999999999999998754332211122 2223368999999987743 3333 4567999999988765
Q ss_pred eeeccC------C-CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE
Q 001490 947 KQWFPI------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 988 (1068)
Q Consensus 947 ~~~~~~------h-~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~ 988 (1068)
..+... | ...|..-+|+.++.-+.+.+.+ .+.-|++.+...
T Consensus 288 q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 288 QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred eEEecCccccccccccccccccccCCCcccccccch-hhheeeccccce
Confidence 544322 2 2348888899888877776655 456677665543
No 312
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.60 E-value=2e-05 Score=86.86 Aligned_cols=267 Identities=13% Similarity=0.178 Sum_probs=150.2
Q ss_pred cCCCCeEEEEEc--------CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE
Q 001490 319 HPVQHTLLLVGT--------NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 390 (1068)
Q Consensus 319 spdg~~lla~gs--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~ 390 (1068)
|||++++|+.-. ..+.+.|||+++++.... ......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 789986655321 226788999988765532 1224678899999999999998
Q ss_pred eCCcEEEEEEccCCCcccceEEEcc-------c---------cccEEEEEEcCCCCcEEEEEEeCCCc------------
Q 001490 391 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT------------ 442 (1068)
Q Consensus 391 ~~d~~i~vwd~~~~~~~~~~~~~~~-------h---------~~~v~~l~~s~d~~~~~l~s~~~d~~------------ 442 (1068)
. ++.|.+++..++...+. +..| - -+.-..+.|||||+++.++... +..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence 5 66799999887743321 1112 0 1123578899999963333221 222
Q ss_pred -----------------------EEEEECCCCceee-Ee----ccCCCcEEEEeeeecCCccEEEEE--EcCC---cEEE
Q 001490 443 -----------------------IKVWDAVTGSRTY-SF----EGHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA 489 (1068)
Q Consensus 443 -----------------------i~iwd~~~~~~~~-~~----~~h~~~v~~i~~~~~~~~~~l~s~--s~dg---~i~v 489 (1068)
+.|+|+.+++... .. ..-...+..+.|.+ ++..|+.. ..+. .+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 3344554444321 11 11233455555654 44423332 3322 3566
Q ss_pred EeCCCCCceEEecCCC-Cc---EEEEEEc-cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeE-EEEEe
Q 001490 490 WLYDSLGARVDYDAPG-LG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS-VVHFD 563 (1068)
Q Consensus 490 wd~~~~~~~~~~~~~~-~~---i~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~-~~~~~ 563 (1068)
+|..++.......... .. .....+. +++..++..+. ++|-..|++++...+... .+.... ..|. .+.++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~---~~V~~i~~~d 289 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGD---WEVTSILGWD 289 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SS---S-EEEEEEEE
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCc---eeecccceEc
Confidence 6776665544332221 11 2244554 78887777766 777889999999888744 333222 4564 47788
Q ss_pred cCCCEEEE-EEC----CCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490 564 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 618 (1068)
Q Consensus 564 ~~~~~l~~-~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 618 (1068)
++++.|+. +.. ...|+.-++..+..+..+...... ...+.|||++++++....
T Consensus 290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 88877765 443 235666677634455555544332 148999999998886554
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.57 E-value=9.5e-06 Score=90.65 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=76.0
Q ss_pred EecCCCEEEEEeCCeEEEEEccC-----ceeEEEecCCCCCeEEEEEeCCCCCEEEEE-ECCCeEEEEEcCCcee-----
Q 001490 786 LSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV----- 854 (1068)
Q Consensus 786 ~s~dg~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~----- 854 (1068)
+.++|++... .++.|.+.|..+ .+.+..+. -......+++|| ||++++++ ..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 4467887665 467899999998 34444444 455678899999 77766655 4588999999987542
Q ss_pred -------eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001490 855 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 893 (1068)
Q Consensus 855 -------~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~ 893 (1068)
+.+.+--.+ -...+|.++|+...|..-|..|..|++..
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332222 34578999999999999999999999986
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.56 E-value=8.4e-05 Score=87.12 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=84.3
Q ss_pred eEEEEecCCCEEEEEe-----C-CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEE---CCCeEEEEEcCC-
Q 001490 782 PCFALSKNDAYLFSAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS- 851 (1068)
Q Consensus 782 ~~l~~s~dg~~l~~~~-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~- 851 (1068)
+.+.|.-||+++|+.. + ..|++||-+ |..-..-....+.-.+++|-| .|.++|+-. .|+.|.+|.-..
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCc
Confidence 5688999999999853 4 679999988 544433333444557899999 888888753 456799997542
Q ss_pred --ceeeeeecccccCeEEEEEcCCCCEEEE---EeCCCcEEEEECCCCceeeeeeee
Q 001490 852 --SEVISKLEGHSKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQTCRSLQ 903 (1068)
Q Consensus 852 --~~~~~~~~~h~~~V~~l~~spdg~~l~s---~s~dg~i~iwd~~~~~~~~~~~~~ 903 (1068)
|+....+.....+|..++|+.++..||+ ......|++|-+.+-.......+.
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~ 333 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ 333 (1265)
T ss_pred cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe
Confidence 3333334444555999999999999998 555556999999885543333333
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=0.00043 Score=66.99 Aligned_cols=137 Identities=12% Similarity=-0.056 Sum_probs=89.7
Q ss_pred cEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccC
Q 001490 476 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 555 (1068)
Q Consensus 476 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~ 555 (1068)
.+++.|+..+.+..-|..+++......... .+.+-+.- -|++++.|.. .+.+++.+.++|+....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 466777777777777777776655433222 33322222 4666777776 4459999999998887777544 2
Q ss_pred CeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001490 556 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 623 (1068)
Q Consensus 556 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 623 (1068)
--......+++..+.+|+.|++.+..|..+...+...+..+.. ..+-+..|....|+.+...|.+.
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence 2233456788999999999999999999999999887766543 23445556333344444444443
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=0.00013 Score=70.39 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=96.7
Q ss_pred EEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcE
Q 001490 316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 395 (1068)
Q Consensus 316 v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~ 395 (1068)
+..-||.+++++.|+..+.++--|..+|+..-+.. -+.+|.+-+.- -|++++.|+..|.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCc
Confidence 34456677899999999999999999998764311 12233332222 4778999999999
Q ss_pred EEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCc
Q 001490 396 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 475 (1068)
Q Consensus 396 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 475 (1068)
+++-+.++|+.......+..- .+ .....+++. ++..|+.|++.+..|..+..++...+...+...+-++.+. +
T Consensus 75 lYfl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~- 147 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D- 147 (354)
T ss_pred EEEEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-
Confidence 999999999765533222111 11 233466788 8999999999999999999999887644433333333322 2
Q ss_pred cEEEEEEcCCcEEEE
Q 001490 476 HFIFSISVDGKIKAW 490 (1068)
Q Consensus 476 ~~l~s~s~dg~i~vw 490 (1068)
..|+.+...|.+.--
T Consensus 148 ~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 148 GSLYAAITAGAVLAV 162 (354)
T ss_pred ceEEEEeccceEEEE
Confidence 245555555554433
No 317
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=1.6e-06 Score=83.20 Aligned_cols=209 Identities=14% Similarity=0.200 Sum_probs=125.9
Q ss_pred ceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC
Q 001490 313 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 392 (1068)
Q Consensus 313 V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~ 392 (1068)
|+.+.|+-+. .|+++..++.+......++.+.. .|+-.....++.. +..|.++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence 6677777764 56888888888887776665543 2222222222222 2234444334444445778999999
Q ss_pred CcEEEEEEccCCCcccceEEEc-cccccEEEEEEcCCCCcEEEEEEe-----CCCcEEEEECCCCceeeEeccCCCcEEE
Q 001490 393 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 466 (1068)
Q Consensus 393 d~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 466 (1068)
||.+.+.+.+.-..+. ..+. .|.+. .+.+....+. .+.+++ .-+..+.|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 12221 1222223343 333322 1234556665533322111112234888
Q ss_pred EeeeecCCccEEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCC
Q 001490 467 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 540 (1068)
Q Consensus 467 i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~ 540 (1068)
++-+|.. .+.+++|+.||.+-+||.+...... .+..|..++..+.|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 8888764 3688899999999999999875444 5667888999999998 6678888876 55699999654
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.9e-06 Score=87.81 Aligned_cols=300 Identities=14% Similarity=0.160 Sum_probs=191.0
Q ss_pred ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490 709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 788 (1068)
Q Consensus 709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 788 (1068)
|...|..+.. ...+++++++-||.++.|.-.. ..|..+.. ....|...+.+++.+-
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~--------------------isGvEfVK---hFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVK---HFRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCC--------------------ccceeehh---hhHHHHHHHHhhhccc
Confidence 5556665544 4567799999999999885211 01111111 1113777888999999
Q ss_pred CCCEEEEEe--CCeEEEEEccCceeEEEecCCC-CCeEEEEEeCCCC-CEEEEE-ECCCeEEEEEcCCce-eeeee-ccc
Q 001490 789 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN-NVIAIG-MDDSTILIYNARSSE-VISKL-EGH 861 (1068)
Q Consensus 789 dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~-~~lasg-~~dg~v~iwd~~~~~-~~~~~-~~h 861 (1068)
||.+..+.. |..++++|+++...+..++... ...-+...++.+. ..||++ -.+|.+.++|-...- ....+ .-|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999966 6889999998776654433211 1122333344111 234433 467899999976543 33333 349
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeeeee------ecCCCcccCCCCceEEEEeeCCCEEEE-EeCC
Q 001490 862 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW-GIQTCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 933 (1068)
Q Consensus 862 ~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~-~~~~~~~~------~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~ 933 (1068)
..+|..+.+++-+..+++....|.|.-|..+.. +....... ..+-+....-....++.|+|+|..+++ +.|.
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence 999999999999999999999999999998841 00000000 001111111135789999999999998 7889
Q ss_pred eEEEEECCCceeeeeeccC-------------------------------C-CcCEEEEEEecCCCEEEEEECCCcEEEE
Q 001490 934 HLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSIH 981 (1068)
Q Consensus 934 ~i~vwd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~t~~~dg~v~vw 981 (1068)
.|++++..+|+.++.+-.. | ...-+.++|...|.+|+-++-=| |+|.
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi 302 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI 302 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence 9999999998776542110 1 33446788899999999887665 8999
Q ss_pred EcCCCcEEEEeccc---------cccCCCCccC-c------ccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001490 982 EASNLEVQCRILST---------AYLRPTTSCL-H------VYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus 982 d~~~~~~~~~~~~~---------~~~~~~~~~~-~------~~~~~~~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
++.++++.+.+-.. .+........ . ..+ .+.+.+ |+.+++++-....++++.
T Consensus 303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf~ 370 (558)
T KOG0882|consen 303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLFR 370 (558)
T ss_pred EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEEe
Confidence 99999887655311 1111110000 0 011 123556 678999999999999994
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.52 E-value=7.9e-05 Score=82.24 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=157.8
Q ss_pred ccCCCEEEEEeeCC-----CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeE
Q 001490 514 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 588 (1068)
Q Consensus 514 s~d~~~l~~~~~~~-----~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 588 (1068)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888877643211 1245699999999876554444 3 5788899999999988876 57899999888744
Q ss_pred EEEEeCCCC----------------CCCCceEEEecCCCEEEEEEC-CCeEEEEECC---CCceeeeccccccceeeeEE
Q 001490 589 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIAN-ENRIKILETP---ESNSVDAAGVLSDNLRKLSV 648 (1068)
Q Consensus 589 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~i~~~~~ 648 (1068)
.+... .+. ...-..+.||||+++|+.... +..+..+.+. .... .-..+..+.+
T Consensus 76 ~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y 148 (353)
T PF00930_consen 76 TQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY 148 (353)
T ss_dssp EESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred EEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence 43322 220 122357889999999987654 3444443322 1110 0001111111
Q ss_pred cCCccccccccccCeeeecCCCCCCcccceeeccccc--ceeecccccCCcccceeecC--CccccccEEEEEEecCCce
Q 001490 649 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA 724 (1068)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~ 724 (1068)
. ..|...-. +.++++...+.. .+..+ .......+..+.|+++++.
T Consensus 149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence 1 11111122 333444322221 11111 1224567889999999995
Q ss_pred EEEeecC---ccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCEEEEEe--C
Q 001490 725 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G 798 (1068)
Q Consensus 725 l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~~~~--d 798 (1068)
++....+ ..+.+.. .|+.++.+.........+--.......|. +++..++..+ +
T Consensus 198 l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred EEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 5544433 2233322 23333332222222111122233456665 7776666655 4
Q ss_pred Ce--EEEEEccCceeEEEecCCCCCeEE-EEEeCCCCCEEEEEECCC----eEEEEEcCCceeeeeecccccCeEEEEEc
Q 001490 799 GV--ISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS 871 (1068)
Q Consensus 799 g~--i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 871 (1068)
|. |.+++..++.. +.+....-.|+. +.++++++.+..++..++ .|+.-++.++..+..+....+.-..+.||
T Consensus 258 G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp SSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred CCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 54 67777776663 355545556755 778884455555666533 66666777233345554433333789999
Q ss_pred CCCCEEEEEe
Q 001490 872 DALNILVSSG 881 (1068)
Q Consensus 872 pdg~~l~s~s 881 (1068)
|||++++...
T Consensus 337 pdg~y~v~~~ 346 (353)
T PF00930_consen 337 PDGKYYVDTY 346 (353)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999988543
No 320
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.51 E-value=1e-07 Score=89.75 Aligned_cols=134 Identities=23% Similarity=0.275 Sum_probs=100.0
Q ss_pred cHHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcchHHHHHHHHhhccccCCCCHHHHHHHH
Q 001490 13 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 92 (1068)
Q Consensus 13 ~~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~~~L~~~l~p~~~~~~~~~~~l~ 92 (1068)
+....+++|++|+++.|++.+......-..... .+.|.+++|+|+|+|..++..+|+++.|+.|+|......+.++.+.
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 367899999999999999999766422111112 2779999999999999999999999999999877443567888999
Q ss_pred hhhcccCccC--hhhhhhhcCChHHHHHHHHHHHHhhhccCccccccccCCCcc-hhHHHHHHHhhccc
Q 001490 93 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNW 158 (1068)
Q Consensus 93 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~ 158 (1068)
.||.+++..+ ...+..... ...|+.|.+.+...+-...- +| ...|+.++.+....
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~ 140 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSA 140 (145)
T ss_pred HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence 9999887654 234444333 37799999999887665333 33 45688888776543
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.2e-05 Score=80.47 Aligned_cols=251 Identities=13% Similarity=0.154 Sum_probs=148.4
Q ss_pred eecCCCcceEEEEECCCCC-EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490 367 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 445 (1068)
Q Consensus 367 ~l~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 445 (1068)
++.+|...|..++|||..+ ++..++.+..|.|.|+++...+. .+..+ ..+++++|.-|... ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 4778999999999999877 78888999999999999976554 44455 78999999998876 8889999999999
Q ss_pred EECCCCce-eeEecc--CCCcEEEEeeeec----CCccEEEEEEcCCcEEEEeCCCCC--ceEEecC-CCCcEEEEEEcc
Q 001490 446 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA-PGLGCTRMAYSA 515 (1068)
Q Consensus 446 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~-~~~~i~~~~~s~ 515 (1068)
||++..+- +..+.+ ...+|..++.-+. ..|.+|+..+.+ +..|++.... ....... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986543 222222 2234444432211 122344444433 3445443222 2222222 244566777777
Q ss_pred CCCEEEEEeeCCCCceeEE----EEeCCCCeeeeEEe----cccc-ccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCC
Q 001490 516 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 585 (1068)
Q Consensus 516 d~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 585 (1068)
-.+.++....++.....++ --|..+|..+..-+ |... ....-..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666666554432211111 12222333322111 1110 0011112222345566665 55778899999999
Q ss_pred CeEEEEEeCCCCCCCCceEEEec-C-CCEEEEEECCCeEEEEECC
Q 001490 586 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 628 (1068)
Q Consensus 586 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iwd~~ 628 (1068)
++.++.+.... +|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998763 355555443 3 34565555 4578887654
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.46 E-value=5e-05 Score=88.94 Aligned_cols=233 Identities=11% Similarity=0.221 Sum_probs=138.9
Q ss_pred cccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001490 710 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 789 (1068)
Q Consensus 710 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 789 (1068)
...|.++.|..+...++.+...|.+.+-|...... .... .-...|.+++||||
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------eivg----~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------EIVG----NVDNGISAASWSPD 120 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------eeee----eccCceEEEeecCC
Confidence 36899999999999999999999988864322111 0000 14678999999999
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc-----eee------eee
Q 001490 790 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-----EVI------SKL 858 (1068)
Q Consensus 790 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~------~~~ 858 (1068)
++.++..+.+..-++...+..++..-.-+. .-.+ .++++-+| ....=.=+.-..| +.+ ...
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~v~VG-wGrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKFVNVG-WGRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccccceec-ccccceeeecchhhhcccccccccccccch
Confidence 999999987555555555555543322111 0011 12222222 1111111111111 111 111
Q ss_pred cccccCeEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE----
Q 001490 859 EGHSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---- 929 (1068)
Q Consensus 859 ~~h~~~V~~l~~spdg~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~---- 929 (1068)
.-|+ .=++|.|--||+++|+.. ..+.|++||-+. . ++....... +.-.+++|-|.|.++|+
T Consensus 193 ~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~------Lns~se~~~--~l~~~LsWkPsgs~iA~iq~~ 262 (1265)
T KOG1920|consen 193 EQDD-HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-A------LNSTSEPVE--GLQHSLSWKPSGSLIAAIQCK 262 (1265)
T ss_pred hhcc-CCceEEEccCCcEEEEEEEeccCCceeEEEecccc-h------hhcccCccc--ccccceeecCCCCeEeeeeec
Confidence 1122 235689999999999832 237899999873 2 111111110 23468999999999998
Q ss_pred EeCCeEEEEECCCceeeeee---ccCCCcCEEEEEEecCCCEEEE---EECCCcEEEEEcCCCcE
Q 001490 930 VHETHLAIYEAEELTCLKQW---FPISSVPISQATFSCDCRMVFT---SFVDGTLSIHEASNLEV 988 (1068)
Q Consensus 930 ~~d~~i~vwd~~~~~~~~~~---~~~h~~~v~~l~fs~dg~~l~t---~~~dg~v~vwd~~~~~~ 988 (1068)
++|+.|.+|.-+. -....+ .+.....+..++|+.++..|++ ......|++|-+.+...
T Consensus 263 ~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 263 TSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred CCCCcEEEEecCC-ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 3566799998643 222211 1122445999999999999987 44444599999988754
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.46 E-value=5.1e-07 Score=62.69 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490 852 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 852 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd 890 (1068)
|+++..+.+|.+.|++|+|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.1e-06 Score=86.68 Aligned_cols=258 Identities=16% Similarity=0.094 Sum_probs=174.3
Q ss_pred CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC-CCcEEEEECC
Q 001490 371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 449 (1068)
Q Consensus 371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~ 449 (1068)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|...|.+++.+.|+. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777776554 567999999999999998654222222224567888999999999998 7888777 9999999988
Q ss_pred CCceeeEeccCCCcEEEEeee-ecCCc--cEEEEEEcCCcEEEEeCCCCCce--EEecCCCCcEEEEEEccCCCEEEEEe
Q 001490 450 TGSRTYSFEGHGAPVYSLCPH-AKENI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCG 524 (1068)
Q Consensus 450 ~~~~~~~~~~h~~~v~~i~~~-~~~~~--~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~d~~~l~~~~ 524 (1068)
.-..+.-++...-+ ..++|. ..++- ..-++.-.++.+.++|-....+. ..-..|..+|..+.+.+-+..+++.-
T Consensus 85 n~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 65544322211111 111221 11111 22333456788999987665533 34456778999999999999888764
Q ss_pred eCCCCceeEEEEeCCC------CeeeeEE------eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001490 525 TSKEGESFLVEWNESE------GAIKRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592 (1068)
Q Consensus 525 ~~~~~~~~i~~wd~~~------~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 592 (1068)
. .|.|.-|.... .+..-.+ .+.........++.|+|++..+.+-+.|..|++++..+|+.++.+
T Consensus 164 ~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 I----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred c----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 3 56799998763 1111111 111112356789999999999999999999999999998876554
Q ss_pred eCCC-------------------------------CCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeecc
Q 001490 593 DAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 637 (1068)
Q Consensus 593 ~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (1068)
.... ....-..++|...|++|+.++-=| |++.++.++..++.+.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 3210 011234577888899998887754 8999999887776654
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=5.5e-07 Score=89.79 Aligned_cols=168 Identities=16% Similarity=0.103 Sum_probs=126.5
Q ss_pred eEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCC
Q 001490 314 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 393 (1068)
Q Consensus 314 ~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d 393 (1068)
+.++||-+-.-+-++.+.+-.|-|-|+++|..-. + ..+..|.++.|...+.++..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 3347765443333445556789999999986542 1 256789999999999999999999
Q ss_pred cEEEEEEccCCCcc--cceEEEccccccEEEEEEcC-CCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCCcEEEE
Q 001490 394 HIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 467 (1068)
Q Consensus 394 ~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~i 467 (1068)
|.|...|+..+..- ..... --|...|+++..-. +++ +|++.+.+|.|++||.+--++ +..+.||-..-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999875221 11112 25888999998877 555 788888999999999986666 88899998776666
Q ss_pred eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC
Q 001490 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 505 (1068)
Q Consensus 468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 505 (1068)
-++..+....+++++.|...|+|.++.+....++....
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 66666666789999999999999999888777665443
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.44 E-value=5e-05 Score=83.86 Aligned_cols=139 Identities=9% Similarity=0.074 Sum_probs=101.1
Q ss_pred CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 389 (1068)
Q Consensus 310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las 389 (1068)
...|.--+++..++ +++.|+.-|.+.+|+-.+|+..... ..+-.+.+..+..|++..++|.
T Consensus 33 ~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAa 93 (726)
T KOG3621|consen 33 PARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAA 93 (726)
T ss_pred cceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhh
Confidence 34666677788887 6799999999999999888776431 2234456777889999999999
Q ss_pred EeCCcEEEEEEccCCCcccceEEE---ccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc----eeeEeccCCC
Q 001490 390 AYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHGA 462 (1068)
Q Consensus 390 ~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~~ 462 (1068)
|+..|.|.++-+..+........- ..|...|++++|++|+. .+++|...|.|..-.+.+.. ..+.+.....
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 999999999998874432221111 13678999999999999 79999999999988877621 1233334556
Q ss_pred cEEEEee
Q 001490 463 PVYSLCP 469 (1068)
Q Consensus 463 ~v~~i~~ 469 (1068)
.|..+..
T Consensus 172 ~IVQlD~ 178 (726)
T KOG3621|consen 172 EIVQLDY 178 (726)
T ss_pred ceEEeec
Confidence 6666654
No 327
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.42 E-value=0.00083 Score=71.22 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=138.9
Q ss_pred EEcCCCCeEEEEEcCcCc--EEEEecCCCcceeeeeeeeeeccccccceeeeeecCCC-cceEEEEECCCCCEEEEEeCC
Q 001490 317 DFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSK 393 (1068)
Q Consensus 317 ~~spdg~~lla~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~spdg~~las~~~d 393 (1068)
+|.+||++||.++..||. +.+-|+.+++..+ |+... .......++|+++.++.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 789999999998887765 6667778887664 22222 222246678999998877667
Q ss_pred cEEEEEEccCCCcccceEEEccccccEEEEEEc--CCCCcEEEEEEe----------------------CCCcEEEEECC
Q 001490 394 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDAV 449 (1068)
Q Consensus 394 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~l~s~~----------------------~d~~i~iwd~~ 449 (1068)
..|+--|+++.+.. . .+......+-...|. .|+. .++..- ..+.|.--|+.
T Consensus 102 ~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 78999999997632 2 333444545445553 4555 333221 13346666888
Q ss_pred CCceeeEeccCCCcEEEEeeeecCCccEEEEEEc---CCc-EEEEeCCCCCce-EEecCC--CCcEEEEEEccCCCEEEE
Q 001490 450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGAR-VDYDAP--GLGCTRMAYSANGRRLFS 522 (1068)
Q Consensus 450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~-i~vwd~~~~~~~-~~~~~~--~~~i~~~~~s~d~~~l~~ 522 (1068)
+|+....+. -...+..+.|+|.. ..+|+.|-+ +.. -|+|-+++.... ..+..+ ...+.-=-|.|||..+..
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCceeEEEe-cCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 887654443 55667777887753 334444322 221 366755543322 222221 223444458999998876
Q ss_pred Eee-CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC----------------CeEEEEEcCC
Q 001490 523 CGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNK 585 (1068)
Q Consensus 523 ~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~ 585 (1068)
.+. .+..+..|.-+|+.+++....... ....-..-++||+.++-=+.| -.|++++++.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 544 344466888899998866443222 233345556888777662222 2567788887
Q ss_pred CeEEEEEeCC--------CCCCCCceEEEecCCCEEEEEEC-CCeEEEEE
Q 001490 586 VQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 626 (1068)
Q Consensus 586 ~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd 626 (1068)
+......... .....-....|+|||++++..++ .|...||-
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 7654322211 01112356899999998776654 56655554
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=6.1e-06 Score=92.94 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=131.1
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEE
Q 001490 789 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 867 (1068)
Q Consensus 789 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 867 (1068)
++..++.|+ ...+..+|+.+.+..+...-..+.++-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 344555555 677888999998888777655555655554 6789999999999999999999999999999999976
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC--CEEEEEeCCeEE
Q 001490 868 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLA 936 (1068)
Q Consensus 868 l~~spdg~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~d~~i~ 936 (1068)
+.. .|+.|+++|. |.-|+|||+..-.... +++.+.+ -.-+.|.|.- +..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 6899999885 5568999998744222 2333222 2345666653 344447888888
Q ss_pred EEECCC---ceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490 937 IYEAEE---LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982 (1068)
Q Consensus 937 vwd~~~---~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd 982 (1068)
+-|..+ ...-.......+..+.++++|++|..|+.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888432 2111111222355699999999999999999999999997
No 329
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.38 E-value=3.8e-06 Score=80.71 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=116.5
Q ss_pred CCCEEEEEECCCeEEEEEcCCce-eeeeecc-cccCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeeeeeee
Q 001490 831 DNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGG-----DAQIFVWDVDGWGIQTCRSLQ 903 (1068)
Q Consensus 831 d~~~lasg~~dg~v~iwd~~~~~-~~~~~~~-h~~~V~~l~~spdg~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~ 903 (1068)
-+.-++++..||.+.+++.+.-. ...++.. |.+ -.+.+....++.+.+++- -+..++|+++..+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~-------- 170 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK-------- 170 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccc--------
Confidence 46688999999999999876511 1111111 222 112223334444443321 1235677766422
Q ss_pred cCCCcccCCCCceEEEEeeCCCEEEE--EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEec-CCCEEEEEECCCcEEE
Q 001490 904 TPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 980 (1068)
Q Consensus 904 ~~~~~~~~~~~v~~~~~spdg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~v 980 (1068)
.+.........|++++-.|..+.+++ +.||.+.+||++.......++..|..+|+.+-|.| ++..|+++++||.+.-
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 11111111124888999998776665 47789999999999888888889999999999999 6689999999999999
Q ss_pred EEcCCCcEEEEec---cccccCCCCccC--------cccceEE-EECCCCCCEEEEEeCCCcEEEEe
Q 001490 981 HEASNLEVQCRIL---STAYLRPTTSCL--------HVYPHAI-AAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus 981 wd~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~~~-~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
||..+.-+-.... -..++....-.. +-.++++ +|+= -+..|++|++-+-|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence 9988522211111 001111110000 0001112 1222 367899999999998875
No 330
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=7.7e-07 Score=61.77 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.2
Q ss_pred ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEe
Q 001490 301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 339 (1068)
Q Consensus 301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd 339 (1068)
++++++.+|++.|++++|+|+++ ++++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46788999999999999999997 789999999999997
No 331
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.32 E-value=0.0019 Score=68.64 Aligned_cols=299 Identities=11% Similarity=0.113 Sum_probs=136.9
Q ss_pred EEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q 001490 512 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591 (1068)
Q Consensus 512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 591 (1068)
+|.+||+.|+.++. .++...+++.|+.+++..+.-.+.. ........+++.+.++-......|+-.|+++.+....
T Consensus 42 ~ft~dG~kllF~s~-~dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASD-FDGNRNLYLLDLATGEITQLTDGPG---DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE--TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEec-cCCCcceEEEEcccCEEEECccCCC---CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 67899988888664 5678899999999998877666543 2223456778888887776777899999999877666
Q ss_pred EeCCCCCCCCceEEEe--cCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCC
Q 001490 592 IDAGGGLPENPRICFN--KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 669 (1068)
Q Consensus 592 ~~~~~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1068)
+..+... +-...|. .|+..++-.- +-. .............+
T Consensus 118 y~~p~~~--~g~gt~v~n~d~t~~~g~e------~~~-~d~~~l~~~~~f~e---------------------------- 160 (386)
T PF14583_consen 118 YEVPDDW--KGYGTWVANSDCTKLVGIE------ISR-EDWKPLTKWKGFRE---------------------------- 160 (386)
T ss_dssp EE--TTE--EEEEEEEE-TTSSEEEEEE------EEG-GG-----SHHHHHH----------------------------
T ss_pred EECCccc--ccccceeeCCCccEEEEEE------Eee-hhccCccccHHHHH----------------------------
Confidence 6554332 2223443 3455443221 100 00000000000000
Q ss_pred CCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCc-----cEEEEeccCCcc
Q 001490 670 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-----VHLMWRWPRNDL 744 (1068)
Q Consensus 670 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~ 744 (1068)
+..+.....|..-|+.+++. ...+ .....+..+.|+|....+++-+-.| .-|||-+.....
T Consensus 161 -------~~~a~p~~~i~~idl~tG~~--~~v~-----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 161 -------FYEARPHCRIFTIDLKTGER--KVVF-----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp -------HHHC---EEEEEEETTT--E--EEEE-----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred -------HHhhCCCceEEEEECCCCce--eEEE-----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 00000001111111111110 0000 1345677889999877777776543 236676543211
Q ss_pred CCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CC---eEEEEEccCceeEEEecCC
Q 001490 745 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GG---VISLYIVMTFKTILTIMPP 818 (1068)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~---dg---~i~iwd~~~~~~~~~~~~~ 818 (1068)
. ..... .......+..=-|+|||..|..-+ .+ .|.-+|..+++......
T Consensus 227 --------------------~-~~~v~--~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-- 281 (386)
T PF14583_consen 227 --------------------N-VKKVH--RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-- 281 (386)
T ss_dssp -----------------------EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--
T ss_pred --------------------c-ceeee--cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--
Confidence 0 11110 001233445567899998887643 22 47778888886644322
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCC----------------eEEEEEcCCceeeee---------eccccc-CeEEEEEcC
Q 001490 819 SPTATSLAFNPHDNNVIAIGMDDS----------------TILIYNARSSEVISK---------LEGHSK-RVTGLVFSD 872 (1068)
Q Consensus 819 ~~~i~~l~~s~~d~~~lasg~~dg----------------~v~iwd~~~~~~~~~---------~~~h~~-~V~~l~~sp 872 (1068)
......+-.++ |+++++-=+.|. -|+++++..+..... +.+|.. .=....|||
T Consensus 282 ~p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP 360 (386)
T PF14583_consen 282 MPWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP 360 (386)
T ss_dssp E-SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-T
T ss_pred CCceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCC
Confidence 22445666677 888876433331 566778877654211 111111 113479999
Q ss_pred CCCEEEEEe-CCCcEEEEEC
Q 001490 873 ALNILVSSG-GDAQIFVWDV 891 (1068)
Q Consensus 873 dg~~l~s~s-~dg~i~iwd~ 891 (1068)
||++++..| ..|...||-+
T Consensus 361 Dgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 361 DGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TSSEEEEEE-TTSS-EEEEE
T ss_pred CCCEEEEECCCCCCccEEEE
Confidence 999987654 4666666543
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=5.9e-05 Score=77.40 Aligned_cols=250 Identities=13% Similarity=0.103 Sum_probs=141.4
Q ss_pred eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490 303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 382 (1068)
Q Consensus 303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp 382 (1068)
.+.|.+|...|..++|||..+-|+..++.+..|+|.|+++..++.. +..| ..+++++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 4467888889999999999877889999999999999999877765 3334 7899999998
Q ss_pred CC-CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEE------cCCCCcEEEEEEeCCCcEEEEECCC--Cce
Q 001490 383 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR 453 (1068)
Q Consensus 383 dg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~------s~d~~~~~l~s~~~d~~i~iwd~~~--~~~ 453 (1068)
|. .+|..|..+|.|.|||+...+.......-.....+|..++. .+-|. +++....+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 75 56667778899999999865543221111112234444433 23344 34444333 55666432 222
Q ss_pred eeEec-cCCCcEEEEeeeecCCccEEEEEEcCCc------EEE-EeCCCCCceEEec-CC-CC------cEEEEEEccCC
Q 001490 454 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDYD-AP-GL------GCTRMAYSANG 517 (1068)
Q Consensus 454 ~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~------i~v-wd~~~~~~~~~~~-~~-~~------~i~~~~~s~d~ 517 (1068)
...++ +..+...++..++..+ ..|++.-.+-+ |-. -|...+..+.... .+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 22221 1244444555444322 23444322110 000 0111111111000 00 00 11122224555
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEe-cCCCEEEEEECCCeEEEEEcC
Q 001490 518 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMN 584 (1068)
Q Consensus 518 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~ 584 (1068)
++++..+. ..+.+.+||..+++.++++.-.. +|..++.. -++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66665543 36679999999999998887643 66665543 234444444456678887654
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.21 E-value=0.003 Score=72.93 Aligned_cols=197 Identities=10% Similarity=0.093 Sum_probs=117.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCC------cEE--EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC
Q 001490 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA------PVY--SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 504 (1068)
Q Consensus 433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~------~v~--~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 504 (1068)
.++.++.++.|.-.|..+|+.+.++..... .+. .+.+ . ++..++.++.++.|..+|.++++.+......
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--W-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--c-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 366677789999999999998877654322 010 0111 1 2257888889999999999999988876654
Q ss_pred CCc-----EE-EEEEccCCCEEEEEeeCCC-----CceeEEEEeCCCCeeeeEEecccccc-----------------CC
Q 001490 505 GLG-----CT-RMAYSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQH-----------------NS 556 (1068)
Q Consensus 505 ~~~-----i~-~~~~s~d~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~-----------------~~ 556 (1068)
... +. +..+. + ..++.++.+.+ .++.++.+|..+|+.+-.+....... ..
T Consensus 140 ~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 11 11221 2 44444432211 25679999999999887765432000 00
Q ss_pred e-EEEEEecCCCEEEEEECCC------------------eEEEEEcCCCeEEEEEeCCCCC----CCCceEEEe----cC
Q 001490 557 V-SVVHFDTAKDQILAAGDDH------------------VIKIWDMNKVQLLTTIDAGGGL----PENPRICFN----KN 609 (1068)
Q Consensus 557 v-~~~~~~~~~~~l~~~s~dg------------------~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~s----~~ 609 (1068)
+ ...++.+.+..++.++.++ .|.-+|..+|+.+-......+. .......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234555567788887665 7888999999988776532210 000111111 12
Q ss_pred CC---EEEEEECCCeEEEEECCCCceee
Q 001490 610 GT---LLAVIANENRIKILETPESNSVD 634 (1068)
Q Consensus 610 ~~---~l~~~~~dg~i~iwd~~~~~~~~ 634 (1068)
+. .+++++.+|.+...|..+++.+-
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEee
Confidence 32 56677778888888888775543
No 334
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.20 E-value=2.8e-07 Score=70.75 Aligned_cols=53 Identities=32% Similarity=0.576 Sum_probs=43.6
Q ss_pred cHHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcch
Q 001490 13 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 66 (1068)
Q Consensus 13 ~~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~ 66 (1068)
++..++++|++|+|++|++.+............. +.|.|++|+|+|+|+.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCc
Confidence 5789999999999999999998876543333333 8899999999999998764
No 335
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=6.6e-06 Score=82.33 Aligned_cols=151 Identities=7% Similarity=0.063 Sum_probs=112.2
Q ss_pred EEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-----eeeeEEeccccc
Q 001490 479 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-----AIKRTYQGLQLQ 553 (1068)
Q Consensus 479 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-----~~~~~~~~~~~~ 553 (1068)
++.+.+..|-+-|+.++-..... ..+.|.++.|...++.+..|..++ .|..+|++.+ .+...+. |.
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRng----eI~~iDLR~rnqG~~~~a~rly-h~-- 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNG----EIFVIDLRCRNQGNGWCAQRLY-HD-- 298 (425)
T ss_pred ecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCC----cEEEEEeeecccCCCcceEEEE-cC--
Confidence 56667777888887765543322 445677888888889998888744 4999999865 2222222 23
Q ss_pred cCCeEEEEEec-CCCEEEEEECCCeEEEEEcCCCeE---EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490 554 HNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 629 (1068)
Q Consensus 554 ~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 629 (1068)
..|+++..-. +++++++.+.+|+|.+||.+--+. +....+|.....-.-+-..+....++++++|...+||.++.
T Consensus 299 -Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 299 -SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred -cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 5677777665 678999999999999999987666 78888775544444556677778889999999999999999
Q ss_pred Cceeeecccc
Q 001490 630 SNSVDAAGVL 639 (1068)
Q Consensus 630 ~~~~~~~~~~ 639 (1068)
+..+.++...
T Consensus 378 ghLl~tipf~ 387 (425)
T KOG2695|consen 378 GHLLCTIPFP 387 (425)
T ss_pred CceeeccCCC
Confidence 9888877643
No 336
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00011 Score=82.49 Aligned_cols=188 Identities=12% Similarity=0.114 Sum_probs=130.8
Q ss_pred CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001490 820 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 899 (1068)
Q Consensus 820 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~ 899 (1068)
..++|++++ +++++-|+.+|.|++++... .. .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777885 47999999999999998773 33 444446544 56899999999999999999988664332
Q ss_pred eeeecCCCcccCCCCceEEEEeeC-----CCEEEEEeCCeEEEEECCC-ceeeeeeccCCCcCEEEEEEecCCCEEEEEE
Q 001490 900 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSF 973 (1068)
Q Consensus 900 ~~~~~~~~~~~~~~~v~~~~~spd-----g~~la~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 973 (1068)
.-++ .++.+++++|| .+.+++|+...+.++.-.- |.........-.++|.++.| .|.++|-++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 2222 25889999999 4567775544477766441 11112223334789999988 567888887
Q ss_pred CCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001490 974 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 974 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
.+| |+|||+.+++.+..+.+....+. ....+-.+.|.+ ...|+.|=.| +|.+..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence 666 99999999999988885552222 245556688986 3556555444 78888886
No 337
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.12 E-value=0.00057 Score=79.27 Aligned_cols=218 Identities=13% Similarity=0.073 Sum_probs=118.9
Q ss_pred CCeEEEEEeCCCCCEEEEEE------CCC--eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 001490 820 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD 890 (1068)
Q Consensus 820 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~d-g~i~iwd 890 (1068)
..+.+.++|| +|+.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776654 243 55555642 3332223332 37889999999988887543 2222222
Q ss_pred CCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEE---EECCCceeee----eeccCCCcCEEEEEEe
Q 001490 891 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTCLK----QWFPISSVPISQATFS 963 (1068)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~v---wd~~~~~~~~----~~~~~h~~~v~~l~fs 963 (1068)
-..........+............|..+.|||||+++|...+++|+| -....|+... .+..+-...+..+.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21110000000000000001123699999999999999966788887 5555564111 1122223446889999
Q ss_pred cCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 001490 964 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1043 (1068)
Q Consensus 964 ~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~ 1043 (1068)
.++.++ ++..++...+|.+.-.-...... +.. +-.....+++..| ..++++..+|.+.+=.-......|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-----~~~--n~~~~v~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W 574 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-----PSR--NLSAPVVAVAASP---STVYVTDARAVLQLPNSDSGDQYW 574 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCcccccc-----CCC--CccCceEEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence 999855 55555555556544221111111 111 1112235677776 357777778755544334445678
Q ss_pred ccCCCCccc
Q 001490 1044 AVLPPDEIV 1052 (1068)
Q Consensus 1044 ~~~~~~~~~ 1052 (1068)
.+.|...-.
T Consensus 575 ~ev~~l~g~ 583 (591)
T PRK13616 575 REVPGLMGP 583 (591)
T ss_pred eECccccCC
Confidence 888876533
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00026 Score=80.09 Aligned_cols=206 Identities=15% Similarity=0.167 Sum_probs=131.2
Q ss_pred EEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccC-eEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceee-
Q 001490 826 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT- 898 (1068)
Q Consensus 826 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~dg~-----i~iwd~~~~~~~~- 898 (1068)
++++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+-...+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 77899999999988887633 3445777777766 555544445578999888765 8999998653222
Q ss_pred eeee---ecCC-CcccCCCCceEEEEeeCCCEEEEE-eCCeEEEEECC----CceeeeeeccCCCcCEEEEEEecCCCEE
Q 001490 899 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE----ELTCLKQWFPISSVPISQATFSCDCRMV 969 (1068)
Q Consensus 899 ~~~~---~~~~-~~~~~~~~v~~~~~spdg~~la~~-~d~~i~vwd~~----~~~~~~~~~~~h~~~v~~l~fs~dg~~l 969 (1068)
..++ .... .....+.++.+++.|.+-+.+|+| .+|.|..+.-+ .|....- ...-.++|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-SHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-eccCCCCceeeEEecCCcee
Confidence 2333 2111 111123478999999999999997 67788877543 1211111 11127899999999999873
Q ss_pred EEEECCCcEEEEEcCCCcEEEE-eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccC
Q 001490 970 FTSFVDGTLSIHEASNLEVQCR-ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1046 (1068)
Q Consensus 970 ~t~~~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 1046 (1068)
+.+..-..|.+|.+....+... .. ...+..-|.++++. ...|++++. ..|.+|+.++.++-|+.-
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~lnCss~~~~-t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD----------NNGISLNCSSFSDG-TYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec----------cCCccceeeecCCC-CccEEEecC-ceEEEEcCCCcceeeeec
Confidence 3344456799999994442222 22 11233446777762 233555554 478999998888777654
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.11 E-value=5.9e-05 Score=85.33 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=141.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEE
Q 001490 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 512 (1068)
Q Consensus 433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 512 (1068)
.++.|+....+..+|+.+++..+......+.|.-++. +++++.+|...|+|.+-|..+.+.+..+..|.+.+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD-- 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD-- 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence 5777888888999999998887776555555666643 6789999999999999999999999999999998864
Q ss_pred EccCCCEEEEEeeCCC-----CceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC-CCEEEEEECCCeEEEEEcCC-
Q 001490 513 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 585 (1068)
Q Consensus 513 ~s~d~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~- 585 (1068)
|+-.|+.|++|+.+.. .|.+|.+||+++.+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 5567899999987653 36789999999887766555444 22 44667776 45677888999999988432
Q ss_pred CeE-EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490 586 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 629 (1068)
Q Consensus 586 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 629 (1068)
+.+ ......+...+.+..+.++++|..++.|..+|.|.+|.-..
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 111 22222222234488999999999999999999999998443
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.10 E-value=0.0055 Score=70.75 Aligned_cols=183 Identities=15% Similarity=0.186 Sum_probs=105.6
Q ss_pred CCeEEEEEccCceeEEEecCCCC--------------------Ce-EEEEEeCCCCCEEEEEECCC--------------
Q 001490 798 GGVISLYIVMTFKTILTIMPPSP--------------------TA-TSLAFNPHDNNVIAIGMDDS-------------- 842 (1068)
Q Consensus 798 dg~i~iwd~~~~~~~~~~~~~~~--------------------~i-~~l~~s~~d~~~lasg~~dg-------------- 842 (1068)
++.+..+|..+|+.+..+..... .+ ...++.+ .+.+++.++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCC
Confidence 45666677777776666543111 11 1345555 456777777665
Q ss_pred ----eEEEEEcCCceeeeeecc--ccc----CeEEEEEc----CCCC---EEEEEeCCCcEEEEECCCCceeeeeeeecC
Q 001490 843 ----TILIYNARSSEVISKLEG--HSK----RVTGLVFS----DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 905 (1068)
Q Consensus 843 ----~v~iwd~~~~~~~~~~~~--h~~----~V~~l~~s----pdg~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 905 (1068)
.|.-.|..+|+.+..++. |.. ......+. -+|. .++.++.+|.+...|..+++..-......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~- 331 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE- 331 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-
Confidence 799999999998877642 211 00011111 1343 57778889999999999987544322210
Q ss_pred CCcccCCCCceEEEEeeCCCEEEE------------------EeCCeEEEEECCCceeeeeeccC-CC------cCEEEE
Q 001490 906 DGVMTLAPSETHIQFHKDQTRFLL------------------VHETHLAIYEAEELTCLKQWFPI-SS------VPISQA 960 (1068)
Q Consensus 906 ~~~~~~~~~v~~~~~spdg~~la~------------------~~d~~i~vwd~~~~~~~~~~~~~-h~------~~v~~l 960 (1068)
..++.+| +...+. ..++.+.-.|+.+|+.+-+...+ +. .+...-
T Consensus 332 ----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~ 400 (488)
T cd00216 332 ----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGG 400 (488)
T ss_pred ----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCc
Confidence 0112222 111111 12456777777777765442221 00 111111
Q ss_pred EEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490 961 TFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 961 ~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 993 (1068)
.....+.+|++++.||.++.+|..+|+.+.++.
T Consensus 401 ~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 401 SLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred ceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 112356788888999999999999999998877
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0003 Score=78.97 Aligned_cols=178 Identities=12% Similarity=0.137 Sum_probs=120.8
Q ss_pred CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001490 722 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 800 (1068)
Q Consensus 722 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~ 800 (1068)
++.++.|+-+|.+++.+.+.+.. +.. .|... ..+|.++++++ ||+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~~------------------~~~----------~~s~~------~~~Gey~asCS~DGk 94 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNPK------------------TNF----------DHSSS------ILEGEYVASCSDDGK 94 (846)
T ss_pred cceeeeccccceEEEEecCCccc------------------ccc----------ccccc------ccCCceEEEecCCCc
Confidence 56688888899999987654210 000 02211 56899999999 799
Q ss_pred EEEEEccCceeEEEecCCCCCeEEEEEeCC----CCCEEEEEECCCeEEEEEcCC-c-eeeeeecccccCeEEEEEcCCC
Q 001490 801 ISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS-S-EVISKLEGHSKRVTGLVFSDAL 874 (1068)
Q Consensus 801 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~-~-~~~~~~~~h~~~V~~l~~spdg 874 (1068)
|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.- | +....+..-.++|.++.|. |
T Consensus 95 v~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g 170 (846)
T KOG2066|consen 95 VVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--G 170 (846)
T ss_pred EEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--C
Confidence 9999998888777665 5578999999993 256888899888 77775321 1 1112345567899999995 8
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECC
Q 001490 875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 941 (1068)
Q Consensus 875 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~ 941 (1068)
+++|-++.+| |+++|+.+..... .++.+.........-..+.|.++.+ |+.|...+|+|..++
T Consensus 171 ~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 171 NLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred cEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 8999999888 9999999865433 2222222111112345677766655 667777788888877
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.06 E-value=0.003 Score=69.41 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred ceEEEEeeC-CCEEEE-----EeCCe----EEEEECCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490 915 ETHIQFHKD-QTRFLL-----VHETH----LAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982 (1068)
Q Consensus 915 v~~~~~spd-g~~la~-----~~d~~----i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd 982 (1068)
..++.||-. ...+.+ +.+|. -.+|+....+ ++..........|.+.+++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 356777763 333433 12332 4567766443 33333345678999999999999999999999999999
Q ss_pred cCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490 983 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
...+..... . ..+.+..++||| ++..+++|+..|.|.+||+--+
T Consensus 288 ~~~~~t~~~-k-----------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 288 TTRGVTLLA-K-----------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCCeeeee-e-----------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 988744422 1 125567799999 7899999999999999998543
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.05 E-value=0.0084 Score=68.28 Aligned_cols=251 Identities=15% Similarity=0.100 Sum_probs=138.8
Q ss_pred CceEEEEcCCCCeEEEEEcCcC----cEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 387 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l 387 (1068)
.+...++||||++++.+-+..| ++++.|+.+|+.+.. .+ .. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence 3446789999997666555544 499999999977643 11 11 112239999999888
Q ss_pred EEEeCC-----------cEEEEEEccCCCcccceEEEcccccc--EEEEEEcCCCCcEEEEEEeCC--CcEEEEECCCC-
Q 001490 388 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 451 (1068)
Q Consensus 388 as~~~d-----------~~i~vwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~- 451 (1068)
+....+ ..|+.|++.++..-. ...+.+.... ...+..++|++++++.+.+.. ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 776432 347888887764321 2244444333 568899999996333333322 35788888775
Q ss_pred ---ceeeEeccCCCcE-EEEeeeecCCccEEEEEE---cCCcEEEEeCCCCCc---eEEecCCCCcEEEEEEccCCCEEE
Q 001490 452 ---SRTYSFEGHGAPV-YSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 521 (1068)
Q Consensus 452 ---~~~~~~~~h~~~v-~~i~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~ 521 (1068)
.....+......+ ..+... ++.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 2333333333333 333322 333443332 335677777777663 223444443333333344555666
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE--EE--CCCeEEEEEcCCCeEE
Q 001490 522 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLL 589 (1068)
Q Consensus 522 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~ 589 (1068)
.... .++...|+++++..+.......... .+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 3457789999998444444444433 245666665566655544 22 4467888898887754
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00035 Score=77.50 Aligned_cols=198 Identities=19% Similarity=0.156 Sum_probs=119.9
Q ss_pred cceeeecccCCCCceEEEEcCCCCeEEEEEcCc---CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 376 (1068)
Q Consensus 300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 376 (1068)
....+.+..-...+..-+|+|+++.+....-.. ..+.++|+.+++.....+ -.+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence 344455555556788889999999765553333 349999999988765422 123344
Q ss_pred EEEECCCCCEEEEEe-CCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCC
Q 001490 377 RVVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTG 451 (1068)
Q Consensus 377 ~~~~spdg~~las~~-~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~ 451 (1068)
.-+|||||++||.+. .|| .|.+.|+.++...+ +..-.+.-..-.|+|||++ ++++.+..| .|.++|++.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 578999999998774 344 57778888876322 3333333347789999996 344444455 4666676666
Q ss_pred ceeeEeccCCCcEEEEeeeecCCccEEEEEEcC-Cc--EEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490 452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 526 (1068)
.. ..+....+.-. ...+++||++++..+.. |. |.+.|+.+... .............++.++|+.++..+..
T Consensus 317 ~~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 317 QV-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ce-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 54 33322222111 22335688888877743 44 55555555443 2222223334456788899888876643
No 345
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00074 Score=76.55 Aligned_cols=203 Identities=11% Similarity=0.104 Sum_probs=134.9
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCC-eEEEEEeCCCCCEEEEEECCC-----eEEEEEcCCc----
Q 001490 784 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS---- 852 (1068)
Q Consensus 784 l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~---- 852 (1068)
-++++.+..+|.|+ +|.|.+.+-. .+.++.++.+... ++.+-... +..+|++.+.|+ .++||++..-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888899888 7888877643 4555777777666 44444433 446888877765 5899998642
Q ss_pred --eee--eeecc-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeC
Q 001490 853 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 923 (1068)
Q Consensus 853 --~~~--~~~~~-----h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 923 (1068)
+++ ..+.. ...++.+++.|.+-+.+|.|-.+|.|..+.=+--.....+..-...+. .+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 12222 345788999999999999999999998885432221111111122222 37999999999
Q ss_pred CCE-EEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490 924 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 924 g~~-la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 993 (1068)
++- +.++.-..|.+|.+....+.......|+....+..|++-...+++++ +..+.+|+.+.......+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 988 45567788999999844433333566788888888887655455554 4579999988555543343
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.02 E-value=0.0022 Score=65.15 Aligned_cols=198 Identities=9% Similarity=0.096 Sum_probs=113.5
Q ss_pred eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490 303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 382 (1068)
Q Consensus 303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp 382 (1068)
.+.|.+-.++++.++|.|+.++|+|+....+.|...+. +|+.++... +.+ -+..-.|++..
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g 74 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLG 74 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-S
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEEC
Confidence 35667766789999999998889999999999988886 577776533 333 35678899988
Q ss_pred CCCEEEEEeCCcEEEEEEccCCCcc---cc--eEEE--c-cccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC---C
Q 001490 383 DGSLLGVAYSKHIVQLYAYHGGSDA---RQ--QLEI--D-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---G 451 (1068)
Q Consensus 383 dg~~las~~~d~~i~vwd~~~~~~~---~~--~~~~--~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~---~ 451 (1068)
++.++++--.++.+.++++...... .. ...+ . .+...+-.++|.+.++. |+.+-...-..++.+.. +
T Consensus 75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~ 152 (248)
T PF06977_consen 75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGG 152 (248)
T ss_dssp TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-S
T ss_pred CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCc
Confidence 8888877666899999998543221 11 1111 1 24456899999999885 44444455555555432 2
Q ss_pred ceeeE--------eccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC---------CcEEEEEEc
Q 001490 452 SRTYS--------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYS 514 (1068)
Q Consensus 452 ~~~~~--------~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s 514 (1068)
..+.. .......+.++++++. .+++++.......|..+| ..++.+..+.... .....|+|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 153 FDLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp S--EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred cceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence 11111 1123455788888865 567888888888898888 4444443333222 257889999
Q ss_pred cCCCEEEEE
Q 001490 515 ANGRRLFSC 523 (1068)
Q Consensus 515 ~d~~~l~~~ 523 (1068)
++|++.++.
T Consensus 231 ~~G~LYIvs 239 (248)
T PF06977_consen 231 PDGNLYIVS 239 (248)
T ss_dssp TT--EEEEE
T ss_pred CCCCEEEEc
Confidence 999776664
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.98 E-value=0.044 Score=63.52 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=43.9
Q ss_pred CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccc
Q 001490 799 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 861 (1068)
Q Consensus 799 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h 861 (1068)
|.+.-+|+.+++...+.............. .+.+++.++.||.++.+|.+||+.+..++-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568889999999888766433222222222 3447777888999999999999998877643
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00088 Score=74.37 Aligned_cols=195 Identities=14% Similarity=0.074 Sum_probs=121.0
Q ss_pred EccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEE-EEEcCCc--E
Q 001490 413 IDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--I 487 (1068)
Q Consensus 413 ~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s~s~dg~--i 487 (1068)
+..-...+..-+|+|+++.+..++-...+ .+.++|+.+++....+. ..+.-..-.|+| ||+.|+ +...||. |
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp--DG~~l~f~~~rdg~~~i 264 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP--DGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC--CCCEEEEEECCCCCccE
Confidence 34445567888999999964444433333 59999999887655443 122222234544 666555 4556776 4
Q ss_pred EEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCC
Q 001490 488 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 567 (1068)
Q Consensus 488 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 567 (1068)
.+.|+....... +....+.-..-.|+|||++++..+ ++.|.-.|++++.+.+...+...... .-..-.|+|||+
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~----~~~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG----GNSNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC----CCcCccCCCCCC
Confidence 555666655333 333333334678999999999886 56667789999988776533322222 222667999999
Q ss_pred EEEEEEC-CCe--EEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490 568 QILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 619 (1068)
Q Consensus 568 ~l~~~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 619 (1068)
+++..+. +|. |.+.|+.++...+.+.... ....-.+.++++.+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 9988663 344 6667776666554444322 23456788888877765543
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.95 E-value=0.0017 Score=72.46 Aligned_cols=223 Identities=10% Similarity=0.068 Sum_probs=119.5
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
+......+..+.++|+|++++++ .+|.-.|+..... +. ...+.-...+|.+.++ +++-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 33445568899999999999995 6777788873322 21 2234556789999665 66666688899964
Q ss_pred CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 527 (1068)
--+.+....++. ...+..+.. |.+|...+. +.|.+||+.+.+.+..+... +|..+.|+++|.+++..+.
T Consensus 96 n~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-- 164 (443)
T PF04053_consen 96 NFKNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-- 164 (443)
T ss_dssp TTEE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred cCccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence 233333233332 123444421 555655554 48999999999888888755 3889999999999998873
Q ss_pred CCceeEEEEeCCCC-----------eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeE--EEEEeC
Q 001490 528 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDA 594 (1068)
Q Consensus 528 ~~~~~i~~wd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~ 594 (1068)
..+++++.... .....+.... ..|.+.+|..+ .++-.+.. .|+. +-.|+. +..+.
T Consensus 165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld- 232 (443)
T PF04053_consen 165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD- 232 (443)
T ss_dssp ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-
T ss_pred ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-
Confidence 34677654332 0222222212 57888889766 44444444 6666 333433 33332
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490 595 GGGLPENPRICFNKNGTLLAVIANENRIKILETPE 629 (1068)
Q Consensus 595 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 629 (1068)
.++.-+.+.+..+.++....++.+..+.+..
T Consensus 233 ----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 ----KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2356677888777888888888888887763
No 350
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.93 E-value=0.017 Score=63.79 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=68.3
Q ss_pred EEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCE
Q 001490 533 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612 (1068)
Q Consensus 533 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 612 (1068)
-.+|+....+..+.....-.....+.+++++|+++.++.|+.||.|.+||...+..... ... -....++|+|+|..
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~---~~P~~iaWHp~gai 313 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAE---FIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eec---ccceEEEEcCCCcE
Confidence 44566655443222111111136899999999999999999999999999877644332 211 23578999999999
Q ss_pred EEEEECCCeEEEEECCCC
Q 001490 613 LAVIANENRIKILETPES 630 (1068)
Q Consensus 613 l~~~~~dg~i~iwd~~~~ 630 (1068)
+++|+..|.+.+||+.-.
T Consensus 314 ~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCceEEEEEeecC
Confidence 999999999999998754
No 351
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=0.0061 Score=60.34 Aligned_cols=256 Identities=16% Similarity=0.156 Sum_probs=143.4
Q ss_pred CeEEEEEecCCCE-EEEEECCCe-EEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEECC
Q 001490 556 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP 628 (1068)
Q Consensus 556 ~v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~ 628 (1068)
.-..++|+|.... ++.+-.-|+ ..++|..+.+...++.....-.-.-.-.|||||++|+..-.| |.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 4455778887544 344555555 578999988877776544332223345799999999876443 678888876
Q ss_pred CCc-eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCc
Q 001490 629 ESN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 707 (1068)
Q Consensus 629 ~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 707 (1068)
.+- .+..+..
T Consensus 149 ~~fqrvgE~~t--------------------------------------------------------------------- 159 (366)
T COG3490 149 EGFQRVGEFST--------------------------------------------------------------------- 159 (366)
T ss_pred cccceeccccc---------------------------------------------------------------------
Confidence 431 1111110
Q ss_pred cccccEEEEEEecCCceEEEeecCccEEEE-eccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEE
Q 001490 708 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 786 (1068)
Q Consensus 708 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 786 (1068)
|.-....+.+.+||+.++... |.|+.- ++...+++.+.. .-.+.+.+..+|..+....++..-+...|+.++.
T Consensus 160 -~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 160 -HGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred -CCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence 222334566777777665543 233333 222222211111 0123445666777666666654346778999999
Q ss_pred ecCCCEEEEEe-CC----e-EEEEEccCceeEEEecC-------CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce
Q 001490 787 SKNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 853 (1068)
Q Consensus 787 s~dg~~l~~~~-dg----~-i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 853 (1068)
.+||..++.+- .| . --+=-...++.+.-+.. ....|-+++..-+++-..++.-..+...+||..+|.
T Consensus 234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 99998887663 11 1 11111123333333322 224678888887455555555566688899999998
Q ss_pred eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490 854 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 854 ~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd 890 (1068)
.+..-.-- ....++ +.+.-++..+.+|.+.++.
T Consensus 314 vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 314 VVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence 76543211 112222 2334455566778777763
No 352
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=97.86 E-value=9.5e-06 Score=78.04 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=97.4
Q ss_pred CccccccCccc---------cHHHHHHHhhCCChHHHHHhhccCCCC--CCcccceeEEEeeeehhhhhhcCCcchHHHH
Q 001490 2 HRLERESRFYF---------DMKFFEDMILDGKWEDVEQYLSSFTKV--DDNRYSTKIYFEIRKQNFFEALDGHDIAKAL 70 (1068)
Q Consensus 2 ~~le~esg~~~---------~~~~~~~~il~G~w~~~~~~l~~~~~~--~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~ 70 (1068)
....+|+|+.. +=...|.+|..|+-++|+..+..+... +.+. .+.|.+.+|+++|++..+...+|+
T Consensus 47 ~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~l~F~Lq~q~lIEliR~~~~eeal 123 (228)
T KOG2659|consen 47 EKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---ELFFHLQQLHLIELIREGKTEEAL 123 (228)
T ss_pred HHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---hHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34567888776 146788999999999999999887422 2221 166999999999999999999999
Q ss_pred HHHHhhccccCCCCHHHHHHHHhhh---cccCccChhhhhhhcCChHHHHHHHHHHHHhhhccCccccccccCCCcchhH
Q 001490 71 NILKKDLKDFAPGNEELFKELAQLL---TLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQR 147 (1068)
Q Consensus 71 ~~L~~~l~p~~~~~~~~~~~l~~ll---~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~r 147 (1068)
+++|++|+|+..-++..++.|-..| ..+...+.+...- .....|.++.+.+...|=...- .. -..+
T Consensus 124 ~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l---~~~s~R~kvA~~vN~aiL~~~~---~~-----~~~~ 192 (228)
T KOG2659|consen 124 EFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAEL---LSQSLRQKVASEVNSAILASQE---HE-----SEPK 192 (228)
T ss_pred HHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHH---HHHHHHHHHHHHHHHHHHHHhc---cc-----ccch
Confidence 9999999999876666666555433 3343322222211 1145688888888776544222 01 1446
Q ss_pred HHHHHHhhcccc
Q 001490 148 LRRLINQSLNWQ 159 (1068)
Q Consensus 148 L~~ll~qa~~~Q 159 (1068)
|..||+.-+..|
T Consensus 193 l~~llk~~~~~~ 204 (228)
T KOG2659|consen 193 LPFLLKLISWAQ 204 (228)
T ss_pred HHHHHHHHHHHH
Confidence 777774444444
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.84 E-value=0.0076 Score=61.33 Aligned_cols=215 Identities=11% Similarity=0.101 Sum_probs=116.3
Q ss_pred EecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001490 814 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892 (1068)
Q Consensus 814 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~ 892 (1068)
.+.+-...+..++|.|+++.++++....+.|..++.. |+.++++.-. .+..-.|++..++.++++.-.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555666799999999667788888888999999874 7877766432 3558889999888888776679999999984
Q ss_pred CCc--e--eeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe-CCeEEEEECCC---ceeeee-----e--ccCCCcCE
Q 001490 893 GWG--I--QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEE---LTCLKQ-----W--FPISSVPI 957 (1068)
Q Consensus 893 ~~~--~--~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-d~~i~vwd~~~---~~~~~~-----~--~~~h~~~v 957 (1068)
... . .....+..... ......+..++|.|.+..|.+.. ..-..||.+.. ...+.. + .......+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 322 1 11111111111 11113588999999877777654 33355555543 111110 0 11235568
Q ss_pred EEEEEecCC-CEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001490 958 SQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1034 (1068)
Q Consensus 958 ~~l~fs~dg-~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w 1034 (1068)
++++|.|.. .+++.......|..+| .+|+++..+....-. ++.....-.+-.|+|+| +|+ |...+.-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~-~gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF-HGLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG-GG-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc-cCcccccCCccEEEECC-CCC-EEEEcCCceEEEe
Confidence 899999954 5666666778899999 778877666532210 00011223456799998 554 5555566666655
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.83 E-value=0.075 Score=61.66 Aligned_cols=150 Identities=9% Similarity=0.112 Sum_probs=88.8
Q ss_pred eEEEEEcCCceeeeeecccccCeE---------EEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeee------ee--
Q 001490 843 TILIYNARSSEVISKLEGHSKRVT---------GLVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCR------SL-- 902 (1068)
Q Consensus 843 ~v~iwd~~~~~~~~~~~~h~~~V~---------~l~~spdg~---~l~s~s~dg~i~iwd~~~~~~~~~~------~~-- 902 (1068)
+|.--|++||+....++.....+. -+.+-.+|+ .++.+..+|.+++.|-.+++..... ..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 677778999998877765222121 122334676 7889999999999999998753110 00
Q ss_pred --ecCCCccc---------------------CCC--CceEEEEeeCCCEEEE-EeC------------------------
Q 001490 903 --QTPDGVMT---------------------LAP--SETHIQFHKDQTRFLL-VHE------------------------ 932 (1068)
Q Consensus 903 --~~~~~~~~---------------------~~~--~v~~~~~spdg~~la~-~~d------------------------ 932 (1068)
....+... ..+ .-..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00000000 000 0122667776666554 111
Q ss_pred ---------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEecc
Q 001490 933 ---------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 994 (1068)
Q Consensus 933 ---------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 994 (1068)
+.+.-+|+.+|+..-+.... .+...-...-.|.+++.++.||.++.+|..+|+.+.++..
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~--~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKED--FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCC--CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 34777888888776543221 1111111223555777788899999999999999988874
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.82 E-value=0.0065 Score=67.83 Aligned_cols=219 Identities=17% Similarity=0.187 Sum_probs=118.5
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee
Q 001490 779 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 858 (1068)
Q Consensus 779 ~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~ 858 (1068)
..+..+.++|+|++++++++|...|+.....+.... +.-...+|.+ .++ +|+-...++|.|+.--+.+....+
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceEE
Confidence 346789999999999999999999998655444332 2345688987 554 666666889999743333332333
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEE
Q 001490 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 938 (1068)
Q Consensus 859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vw 938 (1068)
... ..+..|-. |.+|...+.+ .|.+||.++++ .+....- ..|..+.||++|.++|...+..++|+
T Consensus 106 ~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~il 170 (443)
T PF04053_consen 106 KLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDV-----SAVKYVIWSDDGELVALVTKDSIYIL 170 (443)
T ss_dssp --S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred cCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEec-----CCCcEEEEECCCCEEEEEeCCeEEEE
Confidence 321 12343333 8888877655 79999999865 3333221 13789999999999999888899998
Q ss_pred ECCCc-----------eeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE--EEEeccccccCCCCccC
Q 001490 939 EAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV--QCRILSTAYLRPTTSCL 1005 (1068)
Q Consensus 939 d~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~ 1005 (1068)
+.+.. ..+.. ...-...|.+.+|..| -++.|. .. .++. +..|+. ++.+. .
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld-----------~ 233 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFEL-IHEISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD-----------K 233 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEE-EEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------S
T ss_pred EecchhcccccccCchhceEE-EEEecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----------C
Confidence 86543 01111 1111567888888877 344433 33 6665 444543 22222 2
Q ss_pred cccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490 1006 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus 1006 ~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
+++. +.+.| ..+.+.....|+.|..+.++..
T Consensus 234 ~~yl--lgy~~-~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 234 PLYL--LGYLP-KENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp --EE--EEEET-TTTEEEEE-TT--EEEEE--HH
T ss_pred ceEE--EEEEc-cCCEEEEEECCCCEEEEEECHH
Confidence 3443 34445 3478888999999988887543
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.0033 Score=70.02 Aligned_cols=197 Identities=12% Similarity=0.130 Sum_probs=117.8
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceee
Q 001490 601 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 680 (1068)
Q Consensus 601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 680 (1068)
+.--+++..+++++.|++.|.+++|+-..+.....-.
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~------------------------------------------- 72 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN------------------------------------------- 72 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-------------------------------------------
Confidence 4455677788999999999999999877653221110
Q ss_pred cccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccC
Q 001490 681 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 760 (1068)
Q Consensus 681 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 760 (1068)
.+..+.+....++++..++++++..|.|.++.++.... ...
T Consensus 73 --------------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-~~~------------ 113 (726)
T KOG3621|consen 73 --------------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-RDL------------ 113 (726)
T ss_pred --------------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-Ccc------------
Confidence 01223455667788888888888889998887654211 000
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCc----eeEEEecCCCCCeEEEEEeCCCCCEE
Q 001490 761 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVI 835 (1068)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~l 835 (1068)
.... .-...|...|+|++|++|+..+.+|+ .|+|..-.+.+. -..+.+......|..+.+.. +.+|
T Consensus 114 ------~~~t-~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LL 184 (726)
T KOG3621|consen 114 ------DYVT-PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLL 184 (726)
T ss_pred ------eeec-cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceeh
Confidence 1111 11113788999999999999999998 499988888762 11233444567788888774 4455
Q ss_pred EEEECCCeEEEEEcCCce--eeeeeccccc-CeEEEEEcCC----CCEEEEEeCCCcEEEEECC
Q 001490 836 AIGMDDSTILIYNARSSE--VISKLEGHSK-RVTGLVFSDA----LNILVSSGGDAQIFVWDVD 892 (1068)
Q Consensus 836 asg~~dg~v~iwd~~~~~--~~~~~~~h~~-~V~~l~~spd----g~~l~s~s~dg~i~iwd~~ 892 (1068)
++...- -.+++.+.+. .+..-. ..+ .-...+|-|. .+-.+.+++-| .|+|..+
T Consensus 185 VStl~r--~~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead 244 (726)
T KOG3621|consen 185 VSTLTR--CILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEAD 244 (726)
T ss_pred Hhhhhh--hheeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCC-CceEEee
Confidence 543322 3445554332 111111 111 1233455543 34455566666 6888765
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0079 Score=66.90 Aligned_cols=208 Identities=13% Similarity=0.147 Sum_probs=146.3
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEEC---CCeEEEEEcCCcee
Q 001490 780 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEV 854 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~~ 854 (1068)
....+++++++..+.+.. .+.|.+.|..+.+......... ....+++++ +++.+.++.. ++++.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345788889988666665 5889999988777766654322 667899999 6655555444 68999999999888
Q ss_pred eeeecccccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE--e
Q 001490 855 ISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 931 (1068)
Q Consensus 855 ~~~~~~h~~~V~~l~~spdg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~ 931 (1068)
+.....-..+ ..++++|+|+.+... ..++.|.+.|..+..... ............-..++++|+|.++.+. .
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc
Confidence 8775543344 889999999965554 478899999977744221 1100011111235679999999987763 2
Q ss_pred C--CeEEEEECCCceeeeeecc-CCCcCEEEEEEecCCCEEEEEECC-CcEEEEEcCCCcEEEEeccc
Q 001490 932 E--THLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRILST 995 (1068)
Q Consensus 932 d--~~i~vwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~d-g~v~vwd~~~~~~~~~~~~~ 995 (1068)
+ +.+.+.|..++........ +-. ....+.++|+|.++.+.... +.+.+-|..+......+...
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 2 5899999988877664222 212 45678999999998887544 88999999999888776633
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.82 E-value=0.0061 Score=67.08 Aligned_cols=281 Identities=12% Similarity=0.131 Sum_probs=144.0
Q ss_pred cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490 712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 791 (1068)
Q Consensus 712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 791 (1068)
.|..+.|+++...++++...|.|.||.+..+.......... -..+.+.+-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~----------------------------~~~~~~~~~-- 52 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP----------------------------DLDYNFRRF-- 52 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc----------------------------ccCcccccc--
Confidence 57889999998889999999999999987654321000000 000000000
Q ss_pred EEEEEeCCeEEEEEccC---------ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee--ecc
Q 001490 792 YLFSASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG 860 (1068)
Q Consensus 792 ~l~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--~~~ 860 (1068)
...++.-.+-|+.. ..+...+....++|++++.|. =-++|+|..+|.+.|.|++....+.. +..
T Consensus 53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 00000111122211 223334445578999999984 45999999999999999987665543 222
Q ss_pred ------cccCeEEEEEc-----CCC---CEEEEEeCCCcEEEEECCC--CceeeeeeeecCCCcccCCCCceEEE-EeeC
Q 001490 861 ------HSKRVTGLVFS-----DAL---NILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQ-FHKD 923 (1068)
Q Consensus 861 ------h~~~V~~l~~s-----pdg---~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~-~spd 923 (1068)
....|+++.|+ .|+ -.|+.|...|.+.+|.+.- +..-..........+. +.+..+. |+.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~ 204 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD 204 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence 33468888887 233 5688889999999998752 1111111111111111 2344433 3222
Q ss_pred ---------------------CCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEe-----cCCCEEEEEECCCc
Q 001490 924 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGT 977 (1068)
Q Consensus 924 ---------------------g~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-----~dg~~l~t~~~dg~ 977 (1068)
..+++++.+..++|+...+.+...... ........+++- ..+..|++-..+|.
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence 125666889999999999888776655 222334445553 36678888999999
Q ss_pred EEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490 978 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus 978 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
|+++.+...+.+.......... ...+. ..++++ +|+.++-.+ ...+.++.+..+
T Consensus 284 i~i~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~g-psE~~l~sv~~~ 337 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTG-PSEIQLFSVWGE 337 (395)
T ss_dssp EEEEETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEEEES-
T ss_pred EEEEECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeC-cccEEEEEEEcc
Confidence 9999999999998877321110 11122 244566 577655554 345555554433
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.81 E-value=0.02 Score=65.28 Aligned_cols=249 Identities=12% Similarity=0.087 Sum_probs=128.8
Q ss_pred ceEEEEECCCCCEEEEE-eCC----cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-C--------
Q 001490 374 SVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-D-------- 439 (1068)
Q Consensus 374 ~V~~~~~spdg~~las~-~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~-------- 439 (1068)
.+..+++||||+++|.+ +.. .+++++|+++|+.+.. .+... ....+.|.+|++. ++.+.. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44578899999999977 333 3699999999965432 11111 1223999999985 333332 2
Q ss_pred -CCcEEEEECCCCcee--eEeccCCCcEEEEeeeecCCccEEEEEEcC----CcEEEEeCCCC----CceEEecCCCCcE
Q 001490 440 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL----GARVDYDAPGLGC 508 (1068)
Q Consensus 440 -d~~i~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~vwd~~~~----~~~~~~~~~~~~i 508 (1068)
...|+.|.+.++..- ..+.........+....+.|+++|+..+.. ..+.+.++... .....+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 224888888877543 444444444322233335577777655433 23677777664 2222322222233
Q ss_pred EEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee---eeEEeccccccCCeEEEEEecCCCEEEE-EECCC--eEEEEE
Q 001490 509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIKIWD 582 (1068)
Q Consensus 509 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg--~i~iwd 582 (1068)
....-...+.+++. +..+...+.|...++..... ...+..+. ..+.-..+...+++|+. ...++ .|++++
T Consensus 280 ~~~v~~~~~~~yi~-Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 280 EYYVDHHGDRLYIL-TNDDAPNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEEEETTEEEEE-E-TT-TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEEccCCEEEEe-eCCCCCCcEEEEecccccccccceeEEcCCC---CceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 22222233434433 33444567788888887653 22344333 32233333344555555 44444 588899
Q ss_pred cCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEECCCCce
Q 001490 583 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 632 (1068)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~~ 632 (1068)
+..+.....+..... ..|..+...+++..+..... -+++..||+.+++.
T Consensus 356 ~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 356 LDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 984555555554432 22344444455554433222 36788888887754
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.013 Score=65.49 Aligned_cols=199 Identities=17% Similarity=0.165 Sum_probs=111.5
Q ss_pred EEEecCCCEEEEEeCC------------eEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC
Q 001490 784 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 851 (1068)
Q Consensus 784 l~~s~dg~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 851 (1068)
++.+|.|..+|...+. .|+||+.. |+.+.++.-..+.+.++.|+. +. .|++-..||.+++||+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-
Confidence 4566666666666544 58899876 566666554448999999997 44 55567789999999986
Q ss_pred cee-------eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eeeeeec-CCCcc--cCCCCceE-EE
Q 001490 852 SEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSLQT-PDGVM--TLAPSETH-IQ 919 (1068)
Q Consensus 852 ~~~-------~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~-~~~~~--~~~~~v~~-~~ 919 (1068)
|+. +....-....+....+..+|-.++ ..++.+.+- .+.... ..+.+.. +.... ........ ..
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceE
Confidence 333 111111222233334444553333 334444333 222211 1011111 11000 00001111 33
Q ss_pred EeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccc
Q 001490 920 FHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 995 (1068)
Q Consensus 920 ~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~ 995 (1068)
++.+....+. ..++.+.+.+....+. . ...+++..+++||+|++||.-..+|.+.+.+.+-.+..+.+...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 4555554444 4445566444332211 1 12468999999999999999999999999988877777777633
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.78 E-value=0.0075 Score=66.38 Aligned_cols=254 Identities=13% Similarity=0.121 Sum_probs=134.6
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCccee------ee------------eeeeeeccccc------cceeeee
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL 367 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~ 367 (1068)
.|+.+.|+++..- ||+|...|.|.||.+...+.-. .. .-.+-|+.... ...+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999999764 5888899999999885432221 00 11233443211 2234445
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEcc------ccccEEEEEEc-----CCC-CcEEEE
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS-----APC-KQISVI 435 (1068)
Q Consensus 368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~------h~~~v~~l~~s-----~d~-~~~~l~ 435 (1068)
+....++|++++.| |=.++|+|+.+|.+.|.|+.....+.. ..+.. ....|+++.|+ .|+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 667999999999999999977654432 12222 23468888886 222 224788
Q ss_pred EEeCCCcEEEEECC--C-Ccee----eEeccCCCcEEEEeeeecCCc-------------------cEEEEEEcCCcEEE
Q 001490 436 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 489 (1068)
Q Consensus 436 s~~~d~~i~iwd~~--~-~~~~----~~~~~h~~~v~~i~~~~~~~~-------------------~~l~s~s~dg~i~v 489 (1068)
.|...|.+.+|.+. . +.-. .....+.++|..+..-...+| .-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2211 122246677777763321111 22455566788999
Q ss_pred EeCCCCCceEEecCCCCcEEEEEEc-----cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc-ccCCeEEEEEe
Q 001490 490 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD 563 (1068)
Q Consensus 490 wd~~~~~~~~~~~~~~~~i~~~~~s-----~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~~ 563 (1068)
+...+.+..............+++- ..+..|++... ++.++++.+..-+.+..+.-... ....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888777665554332344445553 24555666554 66799999988777766665320 11234445566
Q ss_pred cCCCEEEEE
Q 001490 564 TAKDQILAA 572 (1068)
Q Consensus 564 ~~~~~l~~~ 572 (1068)
++|+.++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666654444
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.73 E-value=0.0017 Score=75.39 Aligned_cols=187 Identities=10% Similarity=0.087 Sum_probs=107.1
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--eEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECC--------
Q 001490 779 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 841 (1068)
Q Consensus 779 ~~v~~l~~s~dg~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------- 841 (1068)
..+...++||||+.+|... +. .+.+++.. +.. +.+.. ....+.-.|+| +|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999988765 33 35555542 222 33322 22488899999 77777666432
Q ss_pred ----CeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEE---EECCCCceeeeeeeecCCCcccCCCC
Q 001490 842 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 914 (1068)
Q Consensus 842 ----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1068)
+.+.+.++..++... ...+.|..+.|||||+.++... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234444554444322 2345799999999999998876 467777 444444411111111111111 23
Q ss_pred ceEEEEeeCCCEEEEEeCCeEEEEECC-CceeeeeeccC--CCcCEEEEEEecCCCEEEEEECCCcEE
Q 001490 915 ETHIQFHKDQTRFLLVHETHLAIYEAE-ELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 979 (1068)
Q Consensus 915 v~~~~~spdg~~la~~~d~~i~vwd~~-~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~ 979 (1068)
+.++.|..++.+++...++...+|.+. .|..... ..+ ...++.+++-+++ .|+.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 578999999997655444433344433 2332222 122 2567777777763 455556666443
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.15 Score=56.80 Aligned_cols=251 Identities=14% Similarity=0.130 Sum_probs=162.0
Q ss_pred ceEEEEECCCCCEEEEEeCCc-EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001490 374 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 452 (1068)
Q Consensus 374 ~V~~~~~spdg~~las~~~d~-~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 452 (1068)
....+...|++..+....... .+..-+.... .... ....-...-..++.++++.. ..++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 556678888886665553222 3444444411 1111 11111133457888889886 45555567899999988877
Q ss_pred eeeEeccCCCcEEEEeeeecCCccEEEEEEc---CCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC
Q 001490 453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 529 (1068)
Q Consensus 453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 529 (1068)
.......-. ....+++.+ +++.+..+.. ++++.+.|-.+............+ ..++++|+|..++.... .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 776654222 445566655 5555555544 688888888887777664433334 88999999998887762 3
Q ss_pred ceeEEEEeCCCCeeeeEEec--cccccCCeEEEEEecCCCEEEEEECC---CeEEEEEcCCCeEEEEEeCCCCCCCCceE
Q 001490 530 ESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 604 (1068)
Q Consensus 530 ~~~i~~wd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 604 (1068)
++.|.+.|..+....+ -.. ..........+.+++++++++..... +.+...|..++.........+.. ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 6789999977665553 110 01111345678899999988775433 69999999988877763222222 35678
Q ss_pred EEecCCCEEEEEECC-CeEEEEECCCCceeeecc
Q 001490 605 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 637 (1068)
Q Consensus 605 ~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~ 637 (1068)
.++|+|..+.+.... +.+.+.|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999999888554 888898888776655443
No 364
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.018 Score=57.11 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=138.0
Q ss_pred EEEEecCCC-EEEEEe-CCe-EEEEEccCceeEEEecCCCCC--eEEEEEeCCCCCEEEEEECC-----CeEEEEEcCCc
Q 001490 783 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS 852 (1068)
Q Consensus 783 ~l~~s~dg~-~l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~ 852 (1068)
.++|+|.-. -++.+. -|+ ..++|..+.+.+.++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 577888653 445555 355 789999988877665433321 22346999 89998865443 68999999864
Q ss_pred -eeeeeecccccCeEEEEEcCCCCEEEEEeCC------------------CcEEEEECCCCceeeeeeeecCCCcccCCC
Q 001490 853 -EVISKLEGHSKRVTGLVFSDALNILVSSGGD------------------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 913 (1068)
Q Consensus 853 -~~~~~~~~h~~~V~~l~~spdg~~l~s~s~d------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 913 (1068)
+.+..+..|.-....+.+.+||+.|+.+... -.+.+.|-.+++......+.....+ .
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence 5667788887777889999999999976431 1133333333332222222211122 3
Q ss_pred CceEEEEeeCCCEEEEE-e-----CCeEEEEECCCceeeeeec------cCCCcCEEEEEEecCCCEEEEEE-CCCcEEE
Q 001490 914 SETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF------PISSVPISQATFSCDCRMVFTSF-VDGTLSI 980 (1068)
Q Consensus 914 ~v~~~~~spdg~~la~~-~-----d~~i~vwd~~~~~~~~~~~------~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~v 980 (1068)
.+..++.-+||+.++.+ . |--..|=-...|+.+.-+. ..-...|-+++...+..+++..+ .-++..+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 58899999999987763 1 1111111111222221110 01144667778776555555444 4556889
Q ss_pred EEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001490 981 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus 981 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
||..+|.++.... ++. ...++.. ..-|++.+.+|.++++.
T Consensus 307 ~da~tG~vv~~a~----l~d--------aaGva~~---~~gf~vssg~G~~~~~s 346 (366)
T COG3490 307 WDAATGAVVSEAA----LPD--------AAGVAAA---KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEcCCCcEEeccc----ccc--------cccceec---cCceEEecCCceEEecc
Confidence 9999999884433 111 1123322 35678888889988874
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.53 E-value=0.062 Score=57.20 Aligned_cols=235 Identities=10% Similarity=0.108 Sum_probs=133.2
Q ss_pred cCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCC
Q 001490 720 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 799 (1068)
Q Consensus 720 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg 799 (1068)
..++.|+.|+.+| +.++++.... ..... .+...|..+...++-+.+++-+|+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~---------------------~~~~i------~~~~~I~ql~vl~~~~~llvLsd~ 56 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS---------------------KPTRI------LKLSSITQLSVLPELNLLLVLSDG 56 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc---------------------cceeE------eecceEEEEEEecccCEEEEEcCC
Confidence 4567788898888 7887762110 00111 033448999999999999999999
Q ss_pred eEEEEEccCceeEEEe--------------cCCCCCeEEEE--EeCCCCCEEEEEECCCeEEEEEcCCc-----eeeeee
Q 001490 800 VISLYIVMTFKTILTI--------------MPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYNARSS-----EVISKL 858 (1068)
Q Consensus 800 ~i~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~~ 858 (1068)
.+.++++......... ......+...+ -...+...|+++. ..+|.+|..... +..+.+
T Consensus 57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~ 135 (275)
T PF00780_consen 57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI 135 (275)
T ss_pred ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE
Confidence 9999998765544311 11222344444 1222445555554 458888887653 344454
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCC----CcccCCCCceEEEEeeCCCEEEEEeCCe
Q 001490 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD----GVMTLAPSETHIQFHKDQTRFLLVHETH 934 (1068)
Q Consensus 859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~spdg~~la~~~d~~ 934 (1068)
. -.+.+.+++|. ++.++.+..++ ..+.|+.++............ .......++..+. -+++.+|++- ++.
T Consensus 136 ~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~-~~~ 209 (275)
T PF00780_consen 136 S-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY-DNI 209 (275)
T ss_pred E-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe-cce
Confidence 4 44778999998 56777777666 889999976543321111110 0000001223333 3345666543 333
Q ss_pred EEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490 935 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 935 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 993 (1068)
-...|. .|+..+.....=...+.++++. ..||+..+. +.|.||++.+++++..+.
T Consensus 210 g~fv~~-~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 210 GVFVNK-NGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEcC-CCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 333333 4443331010113355566663 358886655 569999999999987766
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.056 Score=60.55 Aligned_cols=195 Identities=12% Similarity=0.103 Sum_probs=106.1
Q ss_pred eeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCce------eEEEecCCCCCeEEEEEeCCCCCEEEEEEC
Q 001490 767 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMD 840 (1068)
Q Consensus 767 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 840 (1068)
+....+. .+.+.++.|+.+.+++++..+|.+++||+.... .+.........+.+..+.. +|-.+ -..
T Consensus 73 l~~i~w~----~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~Givv--Lt~ 145 (410)
T PF04841_consen 73 LSSIPWD----SGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK-NGIVV--LTG 145 (410)
T ss_pred eEEEEEC----CCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC-CCEEE--ECC
Confidence 5554442 378999999999999999999999999986322 1111111112222233433 45233 334
Q ss_pred CCeEEEEEcCCce-eeeee---cc-----ccc-CeEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcc
Q 001490 841 DSTILIYNARSSE-VISKL---EG-----HSK-RVTG-LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 909 (1068)
Q Consensus 841 dg~v~iwd~~~~~-~~~~~---~~-----h~~-~V~~-l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 909 (1068)
++.+++.+--... ....+ .. |.. .... ..++.+....+....++.+.+-+-...+ ....
T Consensus 146 ~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~--------~i~~-- 215 (410)
T PF04841_consen 146 NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK--------QIDS-- 215 (410)
T ss_pred CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--------cccC--
Confidence 5555544322211 11111 11 100 0111 2345555555555555555544333210 0111
Q ss_pred cCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490 910 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982 (1068)
Q Consensus 910 ~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd 982 (1068)
.+++..+++||+|+++|. ..+|.+.|.+.+-.+...+.-..-......+.|..++..++.- ...+.+..
T Consensus 216 --~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 216 --DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred --CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 136999999999999998 6778999988766666555443334566777787765444433 33455544
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.51 E-value=0.081 Score=56.33 Aligned_cols=231 Identities=11% Similarity=0.110 Sum_probs=130.5
Q ss_pred CCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe----
Q 001490 382 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 457 (1068)
Q Consensus 382 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---- 457 (1068)
..++.|+.|+.+| +.++++....... .+ .+...|..+...++-+ .++.-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~---~i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT---RI-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce---eE-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578899999999 8999993322222 11 2333499999999887 444444 599999998754333210
Q ss_pred ----------ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCC-----CceEEecCCCCcEEEEEEccCCCEEEE
Q 001490 458 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 522 (1068)
Q Consensus 458 ----------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~d~~~l~~ 522 (1068)
......+...+......+...+.......|.+|.+... .....+.. ...+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence 11223344444112223334444555558888887653 22233333 3577888888 566666
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccc---------ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE--E
Q 001490 523 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 591 (1068)
Q Consensus 523 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~ 591 (1068)
+.. ....+.|+.++.....+..... ...++..+.. +++.++++- |..-.+.|. .|+... .
T Consensus 154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 653 2388899987766544432210 0122333333 345565543 233333343 444333 3
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccc
Q 001490 592 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 638 (1068)
Q Consensus 592 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1068)
+.-.. ....+++. ..+++..+. +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 33222 24556664 447776665 5699999999999888764
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.022 Score=60.33 Aligned_cols=223 Identities=15% Similarity=0.095 Sum_probs=136.8
Q ss_pred EEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcE
Q 001490 316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 395 (1068)
Q Consensus 316 v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~ 395 (1068)
-.|.|+...|+.+--..+.|.-|+..+|+... +. +-..+.++..-.++..|+++ ..+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~-~~g- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIAC-EHG- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEE-ccc-
Confidence 36778888787887778999999998775432 11 22334555544455556555 333
Q ss_pred EEEEEccCCCcccceEEEc-cc-cccEEEEEEcCCCCcEEEEEEeCC------------CcEEEEECCCCceeeEeccCC
Q 001490 396 VQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRTYSFEGHG 461 (1068)
Q Consensus 396 i~vwd~~~~~~~~~~~~~~-~h-~~~v~~l~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~h~ 461 (1068)
+.+++.+++.......... +. ....+.+...|+|. +.+ +... |.|+..|. .+..++.+..+-
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~ 162 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL 162 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE
Confidence 6777876655422211111 11 23567888999998 333 3322 22444443 566666666666
Q ss_pred CcEEEEeeeecCCccEEEEEE-cCCcEEEEeCCC-----CC--ceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490 462 APVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDS-----LG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 533 (1068)
Q Consensus 462 ~~v~~i~~~~~~~~~~l~s~s-~dg~i~vwd~~~-----~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 533 (1068)
..-+.++|+| |++.++.+. ..+.|..|++.. .. .........+..-.++...+|.+-+++... .+.|
T Consensus 163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v 237 (307)
T COG3386 163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV 237 (307)
T ss_pred EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence 6678899977 555665554 458888888763 11 122233344556678888888887644321 2369
Q ss_pred EEEeCCCCeeeeEEeccccccCCeEEEEEe-cCCCEEEEEEC
Q 001490 534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 574 (1068)
Q Consensus 534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 574 (1068)
.+|+.. |+.+..+..+. ..+.+++|. ++.+.|++.+.
T Consensus 238 ~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEec
Confidence 999988 99998888875 567777775 45566665543
No 369
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.44 E-value=5.2e-05 Score=82.51 Aligned_cols=204 Identities=12% Similarity=0.168 Sum_probs=127.6
Q ss_pred CCCceEEEEcCCCC-eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-CCCEE
Q 001490 310 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 387 (1068)
Q Consensus 310 ~~~V~~v~~spdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-dg~~l 387 (1068)
+..+.|++++-+.+ .++++|..+|.|.+-.+....--. ..+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------AEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------ceecccccccccccccccccHHHH
Confidence 34788888765443 689999999999998876432110 112456778999999998 66777
Q ss_pred EEEe----CCcEEEEEEccCCCcc-cceEEEcc-ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc-eeeEeccC
Q 001490 388 GVAY----SKHIVQLYAYHGGSDA-RQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH 460 (1068)
Q Consensus 388 as~~----~d~~i~vwd~~~~~~~-~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h 460 (1068)
|+|- .|..+.|||+.++-.. +....+.+ ......+++|..+.+ ++.+|.....+.++|++... ....+ .
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--n 194 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--N 194 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--h
Confidence 7772 3557999999987211 11112222 344566889998877 78888888899999986321 11111 2
Q ss_pred CCcEEEEeeeecCCccEEEEEEcCCcEEEEe-CCCCCceEEecCC-----CCcEEEEEEccCCC-EEEEEeeCCCCceeE
Q 001490 461 GAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVDYDAP-----GLGCTRMAYSANGR-RLFSCGTSKEGESFL 533 (1068)
Q Consensus 461 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~-----~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i 533 (1068)
+..+..+.+.|- .+.++++-. ||.|.+|| ...-+.......+ ...+..++|.|-.. .++++..+ .++|
T Consensus 195 Tk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd---S~tI 269 (783)
T KOG1008|consen 195 TKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD---SITI 269 (783)
T ss_pred hhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC---cceE
Confidence 223444454442 233666655 99999999 4433332222112 12488899998543 44444432 5678
Q ss_pred EEEeCC
Q 001490 534 VEWNES 539 (1068)
Q Consensus 534 ~~wd~~ 539 (1068)
+++|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999875
No 370
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.42 E-value=9.3e-05 Score=80.59 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=129.3
Q ss_pred cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce--EEecCCCCcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCC
Q 001490 463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 539 (1068)
Q Consensus 463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~ 539 (1068)
.+.+++.....+...++.|..+|.|-+-.++..... .....+...+++++|++ |...||+|-..-..+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 344555444445567888888999988877654432 34455666889999988 677888776555667889999998
Q ss_pred CC--eeee--EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC-eEEEEEeCCCCCCCCceEEEec-CCCEE
Q 001490 540 EG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLL 613 (1068)
Q Consensus 540 ~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l 613 (1068)
++ .+.. .|.+. ......+++|..+.+.+++|.....+.++|++.. .....+. +..+..+..+| .+.++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 87 2222 12221 1244568889988999999999999999998732 2222221 12356678888 67777
Q ss_pred EEEECCCeEEEEECCCC--ceeeeccccc----cceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccce
Q 001490 614 AVIANENRIKILETPES--NSVDAAGVLS----DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 687 (1068)
Q Consensus 614 ~~~~~dg~i~iwd~~~~--~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 687 (1068)
++-. ||.|.+||..-. .++..+.... ..+..+++.|... |...+..-..++|+
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr 270 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR 270 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence 7655 899999994311 2222222222 2477778877532 33333333446788
Q ss_pred eecccc
Q 001490 688 VEKPLF 693 (1068)
Q Consensus 688 ~wd~~~ 693 (1068)
++++..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 888653
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.054 Score=57.34 Aligned_cols=196 Identities=14% Similarity=0.081 Sum_probs=114.1
Q ss_pred EEecCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec---
Q 001490 785 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--- 859 (1068)
Q Consensus 785 ~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~--- 859 (1068)
.|.++...|.... .+.|.-|+..+++.. .+..+ ..+.++..-. .+..|+++. . -+++++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d-~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALID-AGGRLIACE-H-GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeec-CCCeEEEEc-c-ccEEEeccCCceeEEecccc
Confidence 4667777666665 688999998866432 33322 2334444333 333444332 2 36777776655422221
Q ss_pred -c-cccCeEEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCceeeeeeeecCCCcccCCCCceEEEEeeCCCEE
Q 001490 860 -G-HSKRVTGLVFSDALNILVSSGG-----D----AQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 927 (1068)
Q Consensus 860 -~-h~~~V~~l~~spdg~~l~s~s~-----d----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 927 (1068)
+ -....+.+...|+|.+.++... . ..=.+|.+. .+. .......+.. .-..++|||||+.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~---~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLT---IPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEE---ecCceEECCCCCEE
Confidence 1 1134567888999988886544 0 112345544 222 1222222111 24679999999877
Q ss_pred EEE--eCCeEEEEECCC--cee----eeeeccCCCcCEEEEEEecCCCEEEEEECCC-cEEEEEcCCCcEEEEecc
Q 001490 928 LLV--HETHLAIYEAEE--LTC----LKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILS 994 (1068)
Q Consensus 928 a~~--~d~~i~vwd~~~--~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg-~v~vwd~~~~~~~~~~~~ 994 (1068)
..+ ..+.|.-|++.. +.. .........+....++...+|.+.+++..+| .|.+|+.. |+++..+..
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 774 457788887752 221 1122223456777888889998886555554 89999999 999988873
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.38 E-value=0.0093 Score=70.21 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=50.9
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490 555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 628 (1068)
Q Consensus 555 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 628 (1068)
....|++-+.+| +|++|+.+|.||+||.-..+....++ +-..+|..|..+.||+++++.+. ..+.+++..
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence 457777777666 89999999999999954333223333 32357999999999999987766 567777753
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.36 E-value=0.01 Score=69.83 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=102.6
Q ss_pred CCCEEEEE-ECCCeEEEEEcCCceeeeeecccccC-eEEEEEcCCC-------CEEEEEeCCCcEEEEECCCCceeeeee
Q 001490 831 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDAL-------NILVSSGGDAQIFVWDVDGWGIQTCRS 901 (1068)
Q Consensus 831 d~~~lasg-~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg-------~~l~s~s~dg~i~iwd~~~~~~~~~~~ 901 (1068)
+.++|+.. .....|+-.|+..|+.+..+..|... |.. |.|+. ..-+.|-.+..+..||..-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 44555443 34578999999999999999987754 544 44432 233456667779999987532 112
Q ss_pred eecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEE
Q 001490 902 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 981 (1068)
Q Consensus 902 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vw 981 (1068)
+.............+|++-+.+|...+.+.+|.|++||- .|......+++-..+|..|..+.||++|++.+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 221111112224578999999998877789999999994 45555566667789999999999999998664 6678888
Q ss_pred EcC
Q 001490 982 EAS 984 (1068)
Q Consensus 982 d~~ 984 (1068)
++.
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 864
No 374
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.29 E-value=0.75 Score=55.44 Aligned_cols=206 Identities=13% Similarity=0.140 Sum_probs=119.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCc--------EEEEeeee--------------cCCccEEEEEEcCCcEEEE
Q 001490 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHA--------------KENIHFIFSISVDGKIKAW 490 (1068)
Q Consensus 433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~i~~~~--------------~~~~~~l~s~s~dg~i~vw 490 (1068)
.++.++.++.|.-.|..+|+.+.++...... .+.+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666677788888888888888776432211 11222221 1133478888999999999
Q ss_pred eCCCCCceEEecCCCC------------cEEEEEEcc--CCCEEEEEeeCCC------CceeEEEEeCCCCeeeeEEecc
Q 001490 491 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 550 (1068)
Q Consensus 491 d~~~~~~~~~~~~~~~------------~i~~~~~s~--d~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 550 (1068)
|.++++....+..... ....+.-+| .+..+++++...+ ..+.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9999888765532211 000111122 2334555543222 2578999999999988776531
Q ss_pred ccc------c--------CCe-EEEEEecCCCEEEEEE------------------CCCeEEEEEcCCCeEEEEEeCCCC
Q 001490 551 QLQ------H--------NSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 597 (1068)
Q Consensus 551 ~~~------~--------~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 597 (1068)
... . ..+ ...+++++...++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 100 0 011 2344555544544422 235567778888888776654211
Q ss_pred C-------CCCceEEEec-CCC---EEEEEECCCeEEEEECCCCceeeeccc
Q 001490 598 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAGV 638 (1068)
Q Consensus 598 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1068)
. ....-+.+.. +|+ .++.++.+|.+.++|.++++.+...+.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 0 0111122333 553 788999999999999999988765543
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.22 E-value=0.11 Score=54.02 Aligned_cols=202 Identities=18% Similarity=0.168 Sum_probs=113.7
Q ss_pred CeEEEEEeCCCCCEEEEEE-CC--CeEEEEEcCCceeeee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCc
Q 001490 821 TATSLAFNPHDNNVIAIGM-DD--STILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 895 (1068)
Q Consensus 821 ~i~~l~~s~~d~~~lasg~-~d--g~v~iwd~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd-~~~~~ 895 (1068)
.+.+.++|+ +++.+|... .+ ..++++.. +..... +.+. .+....|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 777666555 23 35555543 332222 2333 688889999988877777677677774 23322
Q ss_pred eeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe----CCeEEEEECC---Cc--eee---eeeccCCCcCEEEEEEe
Q 001490 896 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS 963 (1068)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~l~fs 963 (1068)
... ..+..... . ..|..+.+||||.++|... ++.|.|--+. .+ ..+ ..........++.+.|.
T Consensus 100 ~~~-~~v~~~~~-~---~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEP-VEVDWPGL-R---GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cee-EEeccccc-C---CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 111 11111111 0 1599999999999999832 5677776543 33 111 11111235688999999
Q ss_pred cCCCEEEEEECCCc-EEE-EEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001490 964 CDCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1041 (1068)
Q Consensus 964 ~dg~~l~t~~~dg~-v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~ 1041 (1068)
+++.+++.+...+. +.. .....+... .+ +. .......++++-++ .. +.+.+++.+.- ...+.
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~~-~l------~~--~~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~ 238 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVDGGPST-PL------PS--VNLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGA 238 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEccCCccc-cc------CC--CCCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCC
Confidence 99988776655443 333 333322211 11 11 12223444555444 33 44555555442 56677
Q ss_pred CCccCCC
Q 001490 1042 TWAVLPP 1048 (1068)
Q Consensus 1042 ~~~~~~~ 1048 (1068)
.|...+.
T Consensus 239 ~W~~v~~ 245 (253)
T PF10647_consen 239 SWREVPG 245 (253)
T ss_pred cceEccC
Confidence 7887765
No 376
>PRK10115 protease 2; Provisional
Probab=97.22 E-value=0.55 Score=56.61 Aligned_cols=246 Identities=8% Similarity=0.025 Sum_probs=124.7
Q ss_pred cceEEEEECCCCCEEEEEeCC-----cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCC-----Cc
Q 001490 373 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 442 (1068)
Q Consensus 373 ~~V~~~~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~ 442 (1068)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 356778999999999987332 3699999998864321 1222 1 145999999986 33333222 36
Q ss_pred EEEEECCCC--ceeeEeccCCCcEEEEeeeecCCccEEEEEEc---CCcEEEEeCCC--CCceEEecCCCCcEEEEEEcc
Q 001490 443 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 515 (1068)
Q Consensus 443 i~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~ 515 (1068)
|+.+++.++ +....+........ +......++++++..+. ++.+.+++... ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888899888 33344443333333 33223436666555443 34688888532 222222222222222222 2
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC-CeEEEEEeC
Q 001490 516 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDA 594 (1068)
Q Consensus 516 d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~ 594 (1068)
.+..+...+..+.....|...++........+..+. ....+..+.+. .+..+++...+|.-+++-+.. +..+..+..
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 234444433323334456666665222222333331 12367777776 334555566677655554432 233444432
Q ss_pred CCCCCCCceEEEe--cCCC-EEEEEEC---CCeEEEEECCCC
Q 001490 595 GGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 630 (1068)
Q Consensus 595 ~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iwd~~~~ 630 (1068)
... ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 112222334 3333 4433333 467888887765
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.21 E-value=0.14 Score=56.16 Aligned_cols=83 Identities=8% Similarity=0.056 Sum_probs=57.5
Q ss_pred CCCCeeEEEEecCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEE-EEEeCCC----------------CC-EEEE
Q 001490 777 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI 837 (1068)
Q Consensus 777 ~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d----------------~~-~las 837 (1068)
....+.+++.+|++++.|+.++ |.|.++|+.++..++..++..+.-.. +...... .. +++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4556889999999998888764 99999999999888887765542211 1111101 11 3334
Q ss_pred EECCCeEEEEEcCCceeeeeec
Q 001490 838 GMDDSTILIYNARSSEVISKLE 859 (1068)
Q Consensus 838 g~~dg~v~iwd~~~~~~~~~~~ 859 (1068)
+-.-|.|.||.++.|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5678899999999888766554
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.18 E-value=0.097 Score=57.49 Aligned_cols=82 Identities=11% Similarity=0.236 Sum_probs=57.7
Q ss_pred cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC-----------------CEE
Q 001490 507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQI 569 (1068)
Q Consensus 507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l 569 (1068)
.+.+++.+|++++.++. |.-|+|.++|+.++..++.++|.. ...+.-+.....+ .+|
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEEE
Confidence 57789999998877764 236789999999999999988866 2222222221111 122
Q ss_pred -EEEECCCeEEEEEcCCCeEEEEEeC
Q 001490 570 -LAAGDDHVIKIWDMNKVQLLTTIDA 594 (1068)
Q Consensus 570 -~~~s~dg~i~iwd~~~~~~~~~~~~ 594 (1068)
+-+-..|.|.||.+++|..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 3367889999999999988877764
No 379
>PRK10115 protease 2; Provisional
Probab=97.18 E-value=0.72 Score=55.64 Aligned_cols=244 Identities=10% Similarity=0.024 Sum_probs=123.7
Q ss_pred CceEEEEcCCCCeEEEEEcCcC----cEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 387 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l 387 (1068)
.+..+.+||||++|+.+.+.+| ++++-|+.+|+.+.. . +.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence 5777899999996655544444 488999988874422 0 111 11469999999988
Q ss_pred EEEeCC------cEEEEEEccCCCcccceEEEccccccEE-EEEEcCCCCcEEEEEEe-CCCcEEEEECC--CCceeeEe
Q 001490 388 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 457 (1068)
Q Consensus 388 as~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~~ 457 (1068)
+....+ ..|+.+++.++..-.. ..+.+...... .+..+.|++++++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776542 3688888888732111 12333233333 33445588853322222 34578888843 34422222
Q ss_pred ccCCCcEEEEeeeecCCccEEEEEEc-CCc--EEEEeCCC-CCceEEecC-CCCcEEEEEEccCCCEEEEEeeCCCCcee
Q 001490 458 EGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 532 (1068)
Q Consensus 458 ~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~vwd~~~-~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 532 (1068)
....+....+. +. ++.+++.... ... |...++.. ..-...+.. ....+..+.++ ++.|+.... ..+...
T Consensus 266 ~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence 22222222222 21 2223333222 223 43344442 222223333 23367777776 345554443 234666
Q ss_pred EEEEeCCCCeeeeEEe-ccccccCCeEEEEEe--cCCC-EEEEEE---CCCeEEEEEcCCCe
Q 001490 533 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 587 (1068)
Q Consensus 533 i~~wd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 587 (1068)
+++++..++. +..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 8888865443 33332 111 123333344 3434 333332 45778889988765
No 380
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.05 E-value=0.55 Score=49.49 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=83.0
Q ss_pred CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001490 817 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 896 (1068)
Q Consensus 817 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~ 896 (1068)
...+.+..+..++ ||++++++..-....-||--...-...-..-...|.+|.|+||+.+.+.+ ..|.|+.=+......
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 4456788899998 89999887655555567654221222222345789999999998776644 888888777222111
Q ss_pred eeeee-eecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeecc--CCCcCEEEEEEecCCCEEEEEE
Q 001490 897 QTCRS-LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSF 973 (1068)
Q Consensus 897 ~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~~ 973 (1068)
.-... ....... -.+..++|.+++...|++..+.+ +...+.|+.-..-.. .-......+.|..+.+-++ .+
T Consensus 220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LG 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-
T ss_pred ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-EC
Confidence 11111 1111111 13789999999999998888855 445556654443222 2256788999987766565 44
Q ss_pred CCCcEEEE
Q 001490 974 VDGTLSIH 981 (1068)
Q Consensus 974 ~dg~v~vw 981 (1068)
.+|.+.=|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78877544
No 381
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.05 E-value=0.026 Score=61.50 Aligned_cols=211 Identities=12% Similarity=0.136 Sum_probs=115.7
Q ss_pred cccCCCCCCceeeecCCCCCCCCCeeEE---EEecC----CCEEEEEe----------C-CeEEEEEccCc----eeEEE
Q 001490 757 RLYQPRHGPQFMVNDTTDSNSQEAVPCF---ALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILT 814 (1068)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l---~~s~d----g~~l~~~~----------d-g~i~iwd~~~~----~~~~~ 814 (1068)
++.|+.+...+....+.. ...+.++ .|..+ ..++++|. . |.|.++++... ..+..
T Consensus 5 ~l~d~~~~~~~~~~~l~~---~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 5 RLVDPTTFEVLDSFELEP---NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEETTTSSEEEEEEEET---TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEeCCCCeEEEEEECCC---CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 344455555455555543 3334443 34332 57888774 1 77999999884 12222
Q ss_pred e--cCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce-eeeeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490 815 I--MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 815 ~--~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~~~~-h~~~V~~l~~spdg~~l~s~s~dg~i~iwd 890 (1068)
+ ....++|++++-- +++ |+++. .+.|++|++...+ ....-.- ....+.++... +.+++.|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 1 2346788888876 344 44444 5789999998877 3332221 22245555554 66999998888888886
Q ss_pred CCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCC-------ce-eeeeeccCC-CcCEEEE
Q 001490 891 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA 960 (1068)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~l 960 (1068)
++.... ....+...... ..++++.|-+|++.+++ -.+|.+.++.... +. .+.....-| ...|+++
T Consensus 156 ~~~~~~-~l~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 156 YDEENN-KLILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EETTTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred EEccCC-EEEEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 654221 11122211111 25888999877765555 4678899888762 21 222111112 5677777
Q ss_pred ---EEec--CCC------EEEEEECCCcEEEE
Q 001490 961 ---TFSC--DCR------MVFTSFVDGTLSIH 981 (1068)
Q Consensus 961 ---~fs~--dg~------~l~t~~~dg~v~vw 981 (1068)
.+.| .+. .++.++.+|.|.+.
T Consensus 231 ~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 231 RRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4445 222 47778899998843
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.076 Score=57.90 Aligned_cols=180 Identities=14% Similarity=0.173 Sum_probs=107.8
Q ss_pred eEEEEEcCCceeeeeeccc-ccCeEE---EEEcCC----CCEEEEEeC----------CCcEEEEECCCCce--eeeeee
Q 001490 843 TILIYNARSSEVISKLEGH-SKRVTG---LVFSDA----LNILVSSGG----------DAQIFVWDVDGWGI--QTCRSL 902 (1068)
Q Consensus 843 ~v~iwd~~~~~~~~~~~~h-~~~V~~---l~~spd----g~~l~s~s~----------dg~i~iwd~~~~~~--~~~~~~ 902 (1068)
.|++.|..+.+.+..+.-. ...+.+ +.|..+ ..+++.|.. .|.|.++++..... .....+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788888877766555421 223444 344432 467776643 28899999998410 111111
Q ss_pred ecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCce-eeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEE
Q 001490 903 QTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT-CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 981 (1068)
Q Consensus 903 ~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vw 981 (1068)
.... ..++|.+++-- +.+|+++..+.|.+|++...+ ....-.......+.++... +.+++.|..-..+.++
T Consensus 83 ~~~~----~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 83 HSTE----VKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEE----ESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEEe----ecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 1111 11357777655 445888888999999998877 4443222223456665554 5589999988888888
Q ss_pred EcCC-CcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490 982 EASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus 982 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
.+.. ...+..+. ....+.+++++.|-+++ +.+++++.+|.|+++..+..
T Consensus 155 ~~~~~~~~l~~va--------~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 155 RYDEENNKLILVA--------RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEETTTE-EEEEE--------EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS
T ss_pred EEEccCCEEEEEE--------ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCC
Confidence 6654 22222222 01234567788888744 69999999999999999754
No 383
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0027 Score=69.84 Aligned_cols=93 Identities=22% Similarity=0.430 Sum_probs=71.9
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE-EEEECCCCCEEEEE
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVA 390 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~~~~spdg~~las~ 390 (1068)
.|..+.|+|.-. |+|++..+|.|.+..++ -+.+ |+ +.-|+..|+ +++|.|||+.||+|
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAVG 80 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEEE
Confidence 788999999987 89999999999999887 3333 33 233555666 99999999999999
Q ss_pred eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC
Q 001490 391 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 427 (1068)
Q Consensus 391 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 427 (1068)
-.||+|++-|++++..+... ...-...|.++-|++
T Consensus 81 ~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred ecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 99999999999998765431 112345677777763
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.99 E-value=0.099 Score=54.28 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=91.8
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEE-cCCceee
Q 001490 779 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 855 (1068)
Q Consensus 779 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~ 855 (1068)
..+...++|+||+.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888776 5544444444443333332 333788899999 687777777677677764 3333321
Q ss_pred -eeec--ccccCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeee----eeecCCCcccCCCCceEEEEeeCCC
Q 001490 856 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQTCR----SLQTPDGVMTLAPSETHIQFHKDQT 925 (1068)
Q Consensus 856 -~~~~--~h~~~V~~l~~spdg~~l~s~s---~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~spdg~ 925 (1068)
..+. .-.+.|.++.+||||..+|... .++.|.+=-+......... .+...... ...+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 1111 1122899999999999988766 3567777665533222111 11111111 13689999999999
Q ss_pred EEEEE
Q 001490 926 RFLLV 930 (1068)
Q Consensus 926 ~la~~ 930 (1068)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.037 Score=59.82 Aligned_cols=149 Identities=9% Similarity=0.099 Sum_probs=104.5
Q ss_pred CCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCE--E-----EEEeCCCcEEEEECCCCceeeeeeeec
Q 001490 832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQT 904 (1068)
Q Consensus 832 ~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~--l-----~s~s~dg~i~iwd~~~~~~~~~~~~~~ 904 (1068)
+-+|.++.....++--|+..|+.+..+.-|.+ |.-+.+.||.+. | +.|=.|..|.-||..-.........+.
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 33555566667889999999999999997777 888888887632 2 234457778899986432211111111
Q ss_pred CCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001490 905 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 905 ~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~ 984 (1068)
..- .......|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..+..+.||++|+.. .+..+.+-++.
T Consensus 425 kqy--~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQY--STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccc--ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 111 1112466777777887777789999999997 7777777788889999999999999998855 46677777665
Q ss_pred C
Q 001490 985 N 985 (1068)
Q Consensus 985 ~ 985 (1068)
-
T Consensus 501 ~ 501 (644)
T KOG2395|consen 501 I 501 (644)
T ss_pred c
Confidence 3
No 386
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.00053 Score=70.08 Aligned_cols=141 Identities=17% Similarity=0.215 Sum_probs=93.7
Q ss_pred ccHHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcchHHHHHHHHhhccccCCCCHHHHHHH
Q 001490 12 FDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKEL 91 (1068)
Q Consensus 12 ~~~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~~~L~~~l~p~~~~~~~~~~~l 91 (1068)
.++...+++|++|+...|+..++.-...-.+. ...+.|.++.|+|+||+..+++.+|+++.++.++|...-...+++..
T Consensus 154 ~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~-~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a 232 (389)
T KOG0396|consen 154 KRAYGIRDSLLAGELEPALSWCKEHKVELKKE-ESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLA 232 (389)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 35888899999999999998875443221121 22277999999999999999999999999999999987678889999
Q ss_pred HhhhcccCccChhhhhhhcCChHHHHHHHHH--HHHhhhccCccccccccCCCcc-hhHHHHHHHhhcccchh-cccCC
Q 001490 92 AQLLTLDDIRDHELLSKYYGDALSARKNMML--ELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQHV-HCANP 166 (1068)
Q Consensus 92 ~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~Q~~-~c~~~ 166 (1068)
..+|.++........ .+-....|=..+. .++.+.+- +. || .-+|..+|+--+..|.- .|...
T Consensus 233 ~g~laF~~~t~~sky---~~l~~~~rw~~l~~lF~s~a~~l-------~~---i~~~~~L~~~l~~GLsalKTp~c~~~ 298 (389)
T KOG0396|consen 233 MGLLAFPKYTSSSKY---LNLLTADRWSVLADLFLSEALKL-------FG---IPINPALTIYLQAGLSALKTPRCLND 298 (389)
T ss_pred HHhhcCccccCcccc---cCcccHHHHHHHHHHhhHHHHHH-------hC---CCCCcHHHHHHHhhhhhccccccccc
Confidence 999988753211111 1112233433333 23333332 11 23 22588888877777743 34433
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.94 E-value=0.48 Score=48.12 Aligned_cols=187 Identities=10% Similarity=0.119 Sum_probs=116.6
Q ss_pred CCeeEEEEecCCCEEEEEe-C--CeEEEEEccCceeEEEecCCCC-CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee
Q 001490 779 EAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 854 (1068)
Q Consensus 779 ~~v~~l~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 854 (1068)
.-...+.|..+|.++-+.+ - ..|+.+|+.+++......-... ---.++.. ++++...--.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3456788888888777776 2 4699999999998766553332 23455555 456666677889999999999998
Q ss_pred eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCC
Q 001490 855 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 933 (1068)
Q Consensus 855 ~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~ 933 (1068)
+.++. ..+.=+.++ .||+.|+.+.....+.++|.++-+......+... +... ..+..+.+- +|...|=. ...
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~-g~pv--~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN-GRPV--SNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET-TEE-----EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEEC-CEEC--CCcEeEEEE-cCEEEEEeCCCC
Confidence 88876 345567777 4677777777777799999887654443333221 2111 245666665 56544433 567
Q ss_pred eEEEEECCCceeeeeec-----c------CC---CcCEEEEEEecCCCEEEEEEC
Q 001490 934 HLAIYEAEELTCLKQWF-----P------IS---SVPISQATFSCDCRMVFTSFV 974 (1068)
Q Consensus 934 ~i~vwd~~~~~~~~~~~-----~------~h---~~~v~~l~fs~dg~~l~t~~~ 974 (1068)
.|..-|..+|+....+- . .+ ..-...+++.|++..|...|.
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 78889999998876431 0 01 345788999987765555543
No 388
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.0024 Score=43.43 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.5
Q ss_pred ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490 852 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 852 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd 890 (1068)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.87 E-value=0.08 Score=62.09 Aligned_cols=224 Identities=10% Similarity=-0.001 Sum_probs=118.9
Q ss_pred eEEEEEccCceeE--EEecCCCCCeEEEEEeCCCCCEEEEEECC------CeEEEEEcCCcee--eeeecccccCeEEEE
Q 001490 800 VISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLV 869 (1068)
Q Consensus 800 ~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~--~~~~~~h~~~V~~l~ 869 (1068)
.+..||..+.+-. ..+...... .+++. - ++.+.++|+.+ ..+..||..+.+- +..+.........+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~- 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA- 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-
Confidence 4667777654322 222211111 22333 2 67788888854 3578889877642 22222111112222
Q ss_pred EcCCCCEEEEEeCCC-----cEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe-C-----------
Q 001490 870 FSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E----------- 932 (1068)
Q Consensus 870 ~spdg~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-d----------- 932 (1068)
.-+|+..+.||.++ ++..||..+.+......+...... . .+..-+|+..+.|+ +
T Consensus 349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~------~--~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS------Y--GMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred -EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc------c--cEEEECCEEEEEeCCCccccccccccc
Confidence 23678888888764 488899887654332222222111 1 12234677666642 2
Q ss_pred ------------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECC------CcEEEEEcCC-CcEEEEec
Q 001490 933 ------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD------GTLSIHEASN-LEVQCRIL 993 (1068)
Q Consensus 933 ------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d------g~v~vwd~~~-~~~~~~~~ 993 (1068)
+.+..||..+.+.... ..-...+...-+..-+|+..+.||.+ ..+..||..+ .+.....
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~- 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT- 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-
Confidence 2478899887765432 11111222222334567777777754 2467888887 5544211
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCC--cEEEEeCCCCCCCCccCCCCc
Q 001490 994 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG--EVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg--~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
.++.. .....++.. ++.+.++|+.|| .+..||+. ...|....|.-
T Consensus 498 ---~m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~--~~~W~~~~~~~ 544 (557)
T PHA02713 498 ---TTESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVY--TYEWNHICHQH 544 (557)
T ss_pred ---ccCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCcc--cccccchhhhc
Confidence 12211 112223333 579999999999 77778875 45688887754
No 390
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0049 Score=67.87 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=76.1
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001490 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 897 (1068)
Q Consensus 819 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~-~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~ 897 (1068)
...+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++...
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34678899999 89999999999999999988 778888887877787 9999999999999999999999999987643
Q ss_pred eeeeeecCCCcccCCCCceEEEEe
Q 001490 898 TCRSLQTPDGVMTLAPSETHIQFH 921 (1068)
Q Consensus 898 ~~~~~~~~~~~~~~~~~v~~~~~s 921 (1068)
...... . ...|..+-|+
T Consensus 98 ~~~~~s----~---e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFS----V---ETDISKGIWD 114 (665)
T ss_pred eccccc----c---ccchheeecc
Confidence 332111 1 1246677776
No 391
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.82 E-value=1 Score=48.95 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=39.8
Q ss_pred CeEEEEEec-------CCCEEEEEECCCeEEEEEcCCCeEEE-EEeCCCCC-CCCceEEEecCCCEEEEEECCCeEE
Q 001490 556 SVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLT-TIDAGGGL-PENPRICFNKNGTLLAVIANENRIK 623 (1068)
Q Consensus 556 ~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~ 623 (1068)
.+..+.|.. .+.++++.-..+.|....+..+..+. ....-... ..+..+++.|||.+.++...+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455566653 23455555556778888877554332 22211222 2578999999999888888788764
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.81 E-value=0.088 Score=45.13 Aligned_cols=65 Identities=12% Similarity=0.302 Sum_probs=46.5
Q ss_pred eEEEEEec---C-CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490 557 VSVVHFDT---A-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 627 (1068)
Q Consensus 557 v~~~~~~~---~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 627 (1068)
|+++++.. + .+.|++|++|..|++|+-. +.+..+.... .|.+++-... ..++.+..+|+|.+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~---~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD---KVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc---ceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 44555543 3 2689999999999999854 5666665443 3666766665 57888999999999874
No 393
>PRK13684 Ycf48-like protein; Provisional
Probab=96.76 E-value=1.2 Score=48.62 Aligned_cols=157 Identities=10% Similarity=-0.008 Sum_probs=88.0
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECC
Q 001490 862 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 941 (1068)
Q Consensus 862 ~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~ 941 (1068)
.+.+.++.+.|++.++++ +..|.+.. ....+. .....+..... ..+..+.+.++++.++++..|.+.+=..+
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 456889999999876655 44564432 211111 11112222111 35889999999999888877766532345
Q ss_pred CceeeeeeccC---CCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCC
Q 001490 942 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1018 (1068)
Q Consensus 942 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1018 (1068)
.|..-.....+ ....+..+.|.+++..++ ++.+|.|. ...+.|+.-.........+. ....+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-------~~~~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-------NFYKIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-------ceEEEEEeC--
Confidence 55433321111 134578899999887665 45677654 45565554333221111111 123455553
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001490 1019 PTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 1019 ~~~l~~~~~dg~i~~w~~~ 1037 (1068)
++....++..|.|..|+=.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3566778888988887653
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.036 Score=59.93 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=95.9
Q ss_pred CCCEEE-EEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEE-----EEEeCCCcEEEEECCCC-c-ee
Q 001490 383 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT 454 (1068)
Q Consensus 383 dg~~la-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l-----~s~~~d~~i~iwd~~~~-~-~~ 454 (1068)
+..+|. ++.....++-.|++.|+.+. ++.-|.. |+-+.+.|+.+..-+ +.|-.|..|.-||.+-. . .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444443 44445568888999998766 4444544 777888887652111 23556888999998732 2 22
Q ss_pred eEeccCC----CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490 455 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 530 (1068)
Q Consensus 455 ~~~~~h~----~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 530 (1068)
..-++|. ....|.+- .++| ++++||.+|.||+||--.......+++-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2222332 22333332 3344 899999999999999755555667788888999999999999998765 5
Q ss_pred eeEEEEeC
Q 001490 531 SFLVEWNE 538 (1068)
Q Consensus 531 ~~i~~wd~ 538 (1068)
..+.+.++
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 56777664
No 395
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.71 E-value=0.0032 Score=42.78 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=32.3
Q ss_pred eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEe
Q 001490 302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 339 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd 339 (1068)
....+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 4566778889999999999996 779999999999996
No 396
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.68 E-value=0.74 Score=50.12 Aligned_cols=240 Identities=14% Similarity=0.160 Sum_probs=121.9
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEccCcee---EEEe----cCCCCCeEEEEEeCC---CCCEEEEEECC--------
Q 001490 780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD-------- 841 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d-------- 841 (1068)
..+.|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999998877789999999 43433 2222 123457799999992 24444444422
Q ss_pred CeEEEEEcCCc-------ee-eeeecc---cccCeEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCcee
Q 001490 842 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-------------IFVWDVDGWGIQ 897 (1068)
Q Consensus 842 g~v~iwd~~~~-------~~-~~~~~~---h~~~V~~l~~spdg~~l~s~s~dg~-------------i~iwd~~~~~~~ 897 (1068)
..|.-|....+ +. +..+.. ....-..|+|.|||.+.++.+..+. |.-.+... ...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 23444444332 11 112222 2233566999999988887765443 21122111 100
Q ss_pred eeeeee--------c-CCCcccCCCCceEEEEeeC-CCEEEE--EeCCeEEEEECCCcee----------------e---
Q 001490 898 TCRSLQ--------T-PDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L--- 946 (1068)
Q Consensus 898 ~~~~~~--------~-~~~~~~~~~~v~~~~~spd-g~~la~--~~d~~i~vwd~~~~~~----------------~--- 946 (1068)
...... . -.|+ .....++|.|. |++.++ +.++.=.|.-+..|.- .
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 000000 0 0001 12467999999 887776 4443322222222210 0
Q ss_pred --------eeeccCCCcCEEEEEEec-------CCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceE
Q 001490 947 --------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1011 (1068)
Q Consensus 947 --------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1068)
..+.-.+...+..+.|-. +|.++++.-..+.|....+..+..+...... . .....++..
T Consensus 237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~----~~~~~r~~~ 310 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF--L----GGFGGRPRD 310 (331)
T ss_dssp SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE--C----TTSSS-EEE
T ss_pred cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc--c----ccCCCCceE
Confidence 000111345667777763 4556666655667888888755433322211 1 122235778
Q ss_pred EEECCCCCCEEEEEeCCCcEE
Q 001490 1012 IAAHPLKPTQFAVGLTNGEVY 1032 (1068)
Q Consensus 1012 ~~~~p~~~~~l~~~~~dg~i~ 1032 (1068)
+++.| ||.++++-+.+|.|+
T Consensus 311 v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 311 VAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEET-TSEEEEEE-TTTTEE
T ss_pred EEEcC-CCeEEEEECCCCeEe
Confidence 99999 788888888898875
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.48 E-value=0.12 Score=44.22 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=65.5
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEEC
Q 001490 865 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 940 (1068)
Q Consensus 865 V~~l~~sp---dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~ 940 (1068)
|++|++.. || +.|+.|+.|..|++|+=+. .+...... ..|+.++-...+++..+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777765 32 6799999999999998664 22222221 2588888888877766678999999985
Q ss_pred CCceeeeeeccCCCcCEEEEEEec---CC-CEEEEEECCCcEE
Q 001490 941 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLS 979 (1068)
Q Consensus 941 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~~~dg~v~ 979 (1068)
.. +.|.......+.++++.. || .-|++|-.+|.|-
T Consensus 71 ~~----RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQ----RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cc----eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 32 223322334466666543 33 3588888888764
No 398
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.47 E-value=1.5 Score=46.29 Aligned_cols=230 Identities=11% Similarity=0.058 Sum_probs=113.1
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEec---CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-cee-
Q 001490 780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV- 854 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~- 854 (1068)
...++.|..+ ..++++..+ +.+...+.|+.-..+. ...+....+.... ++..++ .+..|. ||...+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~--iy~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGA--IYRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT----EEEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCc--EEEeCCCCCCe
Confidence 4567777654 445555544 3344444444333322 1223333444333 343444 344554 343333 322
Q ss_pred eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCe
Q 001490 855 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 934 (1068)
Q Consensus 855 ~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~ 934 (1068)
......-.+.+..+.-++||+++++++.-....-||-.... ......... .+|..+.|+|++.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence 12223345678889999999999988766666678765422 112222211 3699999999999988887788
Q ss_pred EEEEE-CCCceeeeee-cc--CCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccce
Q 001490 935 LAIYE-AEELTCLKQW-FP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1010 (1068)
Q Consensus 935 i~vwd-~~~~~~~~~~-~~--~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1068)
++.=+ ...++..... .. .....+..++|.+++...++|+ .|.+ +...+.|+.=.+.......+.. ..
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n-------~~ 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSN-------LY 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCc-------eE
Confidence 88777 3333332221 11 1234588999999988877664 5544 5677778766555533333333 33
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEE
Q 001490 1011 AIAAHPLKPTQFAVGLTNGEVYVI 1034 (1068)
Q Consensus 1011 ~~~~~p~~~~~l~~~~~dg~i~~w 1034 (1068)
.+.|.+ .+.-.+.+.+|.|.-|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 566654 3566677778877655
No 399
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.45 E-value=2 Score=47.56 Aligned_cols=288 Identities=14% Similarity=0.109 Sum_probs=154.4
Q ss_pred CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec-----CCCEEEE
Q 001490 721 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS 795 (1068)
Q Consensus 721 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~l~~ 795 (1068)
+...|++|+..|.++||+-........ ..+...+ -..+|..++.-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence 345788899999999997533221111 1122222 244555555432 4456777
Q ss_pred EeCCeEEEEEccC--ce-------eEEEecCCC--CCeEEEEEeCC----CCCEEEEEECCCeEEEEEcCCceeeeeecc
Q 001490 796 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG 860 (1068)
Q Consensus 796 ~~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~~~~ 860 (1068)
-.-..+.||.+.. |. .+..+..|. .....++.-|- +..+|++=+.||.+.+|+-+.-.....+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 6778888887731 11 112222222 12233333322 246888999999999999776554444443
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee---------------------eeeeecCCCcccCCCCceEEE
Q 001490 861 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT---------------------CRSLQTPDGVMTLAPSETHIQ 919 (1068)
Q Consensus 861 h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~---------------------~~~~~~~~~~~~~~~~v~~~~ 919 (1068)
.--...++|++.-..+++++.+..+.-|....-.... ...+..-+.. -.+..+.
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~----l~i~v~~ 248 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA----LDIQVVR 248 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee----EEEEEEE
Confidence 2223347888888899999999888888763210000 0001111100 0133344
Q ss_pred EeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEE-EEec----CCC---EEEEEECCCcEEEEEcCCCcEEEE
Q 001490 920 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 991 (1068)
Q Consensus 920 ~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~----dg~---~l~t~~~dg~v~vwd~~~~~~~~~ 991 (1068)
++.....+++-.+.++.+.+. +|.......- .....++ .|.. ++. .++.++.++++.||.=.+....+.
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~-~G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~ 325 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKD-NGSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ 325 (418)
T ss_pred cCCCCceEEEEecceEEEEcC-CCeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence 444455566666677777776 3544332111 1122222 2221 322 477788999999987555444433
Q ss_pred eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccCCCCc
Q 001490 992 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
+. ..++. +.++.-++-...+++-+.+|.|.+-=+ -.+|..-..||.+
T Consensus 326 l~----------~~PVa-l~v~~~~~~~G~IV~Ls~~G~L~v~YL-GTdPs~~~~p~~~ 372 (418)
T PF14727_consen 326 LP----------HVPVA-LSVANFNGLKGLIVSLSDEGQLSVSYL-GTDPSLFQVPPLE 372 (418)
T ss_pred CC----------CCCEE-EEecccCCCCceEEEEcCCCcEEEEEe-CCCCccccCCCcc
Confidence 32 11222 223332223688999999999987555 4455444444433
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.061 Score=63.34 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.4
Q ss_pred CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001490 383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 462 (1068)
Q Consensus 383 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 462 (1068)
.+..+|.|+..|.+-..|+.+. ++....-..-.++|++++|+.||+ .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 3567888988999999888764 221111123457999999999999 888999999999999999999999988888
Q ss_pred cEEEEeeee-cCCccEEEEEEcCCcEEEEeC
Q 001490 463 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 492 (1068)
Q Consensus 463 ~v~~i~~~~-~~~~~~l~s~s~dg~i~vwd~ 492 (1068)
+...+-+.. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 888776543 334446777777776 4543
No 401
>PHA02713 hypothetical protein; Provisional
Probab=96.30 E-value=0.19 Score=58.92 Aligned_cols=201 Identities=7% Similarity=-0.039 Sum_probs=98.9
Q ss_pred CCCcEEEEEEeCC------CcEEEEECCCCcee--eEeccCCCcEEEEeeeecCCccEEEEEEcCC-----cEEEEeCCC
Q 001490 428 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 494 (1068)
Q Consensus 428 d~~~~~l~s~~~d------~~i~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~vwd~~~ 494 (1068)
++. +++.||.+ ..+..||..+..-. ..+.........+.+ +|.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 555 56667643 34778888776432 111111111111111 566777777654 377888776
Q ss_pred CCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC-------------------ceeEEEEeCCCCeeeeEEeccccccC
Q 001490 495 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 555 (1068)
Q Consensus 495 ~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~~~ 555 (1068)
..-...-.........-+..-+|+..+.|+.++.. -..+..||+.+.+....-.-.. .
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~ 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G 453 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence 43222111111111111123467777776643210 2458889988775532221111 1
Q ss_pred CeEEEEEecCCCEEEEEECC------CeEEEEEcCC-CeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCC--eEEEEE
Q 001490 556 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 626 (1068)
Q Consensus 556 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iwd 626 (1068)
........-+++..+.|+.+ ..+..||..+ .+....-...........+ .-+|++.++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI--LHDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE--EECCEEEEEeeecceeehhhcC
Confidence 11111122245555556643 2467899887 5544333222221112222 22688889998888 677788
Q ss_pred CCCCceeeecccc
Q 001490 627 TPESNSVDAAGVL 639 (1068)
Q Consensus 627 ~~~~~~~~~~~~~ 639 (1068)
..+.+.......|
T Consensus 532 ~~~~~W~~~~~~~ 544 (557)
T PHA02713 532 VYTYEWNHICHQH 544 (557)
T ss_pred cccccccchhhhc
Confidence 7776554443333
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.22 E-value=0.43 Score=55.87 Aligned_cols=233 Identities=12% Similarity=0.034 Sum_probs=124.4
Q ss_pred CCCCCEEEEEeCC------cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCC------CcEEEEEC
Q 001490 381 SPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDA 448 (1068)
Q Consensus 381 spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd~ 448 (1068)
+..+..+++|+.+ ..+..+|..+++-.. ...+. +...-.+++... |. +.++||.| .++..||.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecC
Confidence 3345666777666 358889988864221 11121 222234455443 45 78888888 35778888
Q ss_pred CCCceee--Eecc--CCCcEEEEeeeecCCccEEEEEEcCCc-----EEEEeCCCCCceEEecCCCCcEEEE-EEccCCC
Q 001490 449 VTGSRTY--SFEG--HGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRM-AYSANGR 518 (1068)
Q Consensus 449 ~~~~~~~--~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~-~~s~d~~ 518 (1068)
.+++-.. .+.. +...+..+ +|.+.+.|+.||. |-.||..+.+-...-.... ..... ...-+|+
T Consensus 357 ~~~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGK 429 (571)
T ss_pred CCCceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCE
Confidence 7766322 1111 22222222 6778888988874 6677766544333222222 22222 2334677
Q ss_pred EEEEEeeCCCCc--eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCC-----eEEEEEcCCCeEEEE
Q 001490 519 RLFSCGTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTT 591 (1068)
Q Consensus 519 ~l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~ 591 (1068)
..++|+.++..+ ..+..||..++.....-.-.. ...... ++ .-++...+.||.|+ ++..||..+.+....
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 777777655432 678899998876543322211 011111 22 22455666677665 377889888776655
Q ss_pred EeCCCCCCCCceEEEecCCCEEEEEECCC-----eEEEEECCCC
Q 001490 592 IDAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPES 630 (1068)
Q Consensus 592 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 630 (1068)
-........+. ...-++...++|+.|| +|..||..+.
T Consensus 507 ~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 507 APMTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccCcccccccc--EEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 32222211111 1223577778887765 4555665544
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.21 E-value=0.52 Score=55.25 Aligned_cols=237 Identities=12% Similarity=0.086 Sum_probs=133.4
Q ss_pred cCCCEEEEEe-C------CeEEEEEccCceeEEEecC-CCCCeEEEEEeCCCCCEEEEEECC-C-----eEEEEEcCCce
Q 001490 788 KNDAYLFSAS-G------GVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSSE 853 (1068)
Q Consensus 788 ~dg~~l~~~~-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~d-g-----~v~iwd~~~~~ 853 (1068)
..+..+++|+ . ..+..||..+++-.....- ....-.++++. ++.+.++|+.| | ++..||..+.+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3455555554 2 3488888887643322221 22233455555 57899999999 3 77888888765
Q ss_pred ee--eeecccccCeEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE
Q 001490 854 VI--SKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 926 (1068)
Q Consensus 854 ~~--~~~~~h~~~V~~l~~spdg~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 926 (1068)
-. ..+...........+ +|...|+||.||. |..||..+.+......+... .-......-+|++
T Consensus 361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGKL 430 (571)
T ss_pred eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCEE
Confidence 22 222222222222222 7889999999974 77788877653332211111 1222334456666
Q ss_pred EEEE-eC------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc-----EEEEEcCCCcEEEEecc
Q 001490 927 FLLV-HE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQCRILS 994 (1068)
Q Consensus 927 la~~-~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-----v~vwd~~~~~~~~~~~~ 994 (1068)
.++| .+ ..+..||..+.......... ..+...-.-.-++...+.||.|+. |..||..+.+....-.
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~- 508 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP- 508 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcc-cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc-
Confidence 6663 23 35889999887765431111 111111133457778888887763 7778888887763321
Q ss_pred ccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCCCccCCCCc
Q 001490 995 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg-----~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
.... .....++.. ++...++|+.|| +|..||. ....|...++++
T Consensus 509 ---m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~~~ 557 (571)
T KOG4441|consen 509 ---MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTEPE 557 (571)
T ss_pred ---Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCCcc
Confidence 1111 111122222 578999999987 6777865 345688777733
No 404
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.19 E-value=1.7 Score=44.21 Aligned_cols=213 Identities=13% Similarity=0.143 Sum_probs=121.5
Q ss_pred ecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001490 815 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 893 (1068)
Q Consensus 815 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~ 893 (1068)
+.+....+.++.|+| +.+.|.+......-.|+=...|+.+.++.- .-...-.+.+.-+|++.++--.++.+.+..+..
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344555699999999 666777666666666666667888877652 122345688888999988888899999988876
Q ss_pred Ccee-eeeeeecCCCccc-CCCCceEEEEeeCCCEEEEEeCC-eEEEEECCCce-eee-eeccCC-------CcCEEEEE
Q 001490 894 WGIQ-TCRSLQTPDGVMT-LAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELT-CLK-QWFPIS-------SVPISQAT 961 (1068)
Q Consensus 894 ~~~~-~~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~d~-~i~vwd~~~~~-~~~-~~~~~h-------~~~v~~l~ 961 (1068)
.... .....+..-+... .......++|+|....|....+. -+.||.++.+. .+. .....+ -..|+++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 5321 1111111111111 12367899999999888886554 35555554332 111 001111 23567777
Q ss_pred Eec-CCCEEEEEECCCcEEEEEcCCCcEEEEeccc-cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEE
Q 001490 962 FSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILST-AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1033 (1068)
Q Consensus 962 fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~ 1033 (1068)
|.+ .+.+|+-+.+++.+.-.|.... .+..+... ...+. +.+.-..-.++.++ ...|...++-+..+.
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL--~~dipqaEGiamDd--~g~lYIvSEPnlfy~ 308 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGL--SSDIPQAEGIAMDD--DGNLYIVSEPNLFYR 308 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCC--cccCCCcceeEECC--CCCEEEEecCCccee
Confidence 776 4556666666777777776644 34333311 11111 11222234566665 344555555554443
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.36 Score=57.27 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=69.5
Q ss_pred EEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCC
Q 001490 325 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 404 (1068)
Q Consensus 325 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~ 404 (1068)
+++.|+..|.|...|+.+.-.-. .| -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 57888888999998886531100 01 1123579999999999999999999999999999998
Q ss_pred CcccceEEEcccccc---EEEEEEcCCCCcEEEEEEeCCCcEEEEEC
Q 001490 405 SDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA 448 (1068)
Q Consensus 405 ~~~~~~~~~~~h~~~---v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 448 (1068)
+.++ .+..|..+ |..+.+..++. .++++...|. +|.+
T Consensus 163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 8766 34444444 33444455555 6888777775 5554
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.12 E-value=0.18 Score=55.78 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=92.5
Q ss_pred CCeEEEEEeCCCCCEEEEEE--CCCeEEEEEcCCceeeeeecccccCeEEEEEcCC----CCEEEEEeCCCcEEEEECCC
Q 001490 820 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 893 (1068)
Q Consensus 820 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spd----g~~l~s~s~dg~i~iwd~~~ 893 (1068)
.++..++|.- +.+.+.+.- .+|.+++= +.+.+..|+ .|..+.|+|- -..|+.......|.||.+.-
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4678899984 444444432 23333322 123344444 4889999985 33455566778899999873
Q ss_pred C--ceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCce-eeeeeccCCCcCEEEEEEecCCCEE
Q 001490 894 W--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT-CLKQWFPISSVPISQATFSCDCRMV 969 (1068)
Q Consensus 894 ~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l 969 (1068)
. +..+...-++.+-....+---..+.|+|....|++ .....-.++++.... .+.. -....+.|-+.+|..||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-Di~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-DIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEE-eccCCceEEEEEecCcCCEE
Confidence 2 22222222222111111123457889999999988 444444455655332 2222 12347899999999999877
Q ss_pred EEEEC-CCcEEEEEcCCCcE
Q 001490 970 FTSFV-DGTLSIHEASNLEV 988 (1068)
Q Consensus 970 ~t~~~-dg~v~vwd~~~~~~ 988 (1068)
+++-. .=.-++||-....+
T Consensus 171 VVAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred EEEeCCeEEEEEecCchhhh
Confidence 76533 33478898776543
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=1.6 Score=44.39 Aligned_cols=205 Identities=16% Similarity=0.237 Sum_probs=122.1
Q ss_pred cccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001490 708 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 787 (1068)
Q Consensus 708 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 787 (1068)
+....+.++.|+|+.+.|++......-.+|- ...|..+.+.++++ -.....+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 3445599999999999999998876555542 23455466666654 3344567888
Q ss_pred cCCCEEEEEe-CCeEEEEEccCceeEEE-------e---cCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce-e-
Q 001490 788 KNDAYLFSAS-GGVISLYIVMTFKTILT-------I---MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-V- 854 (1068)
Q Consensus 788 ~dg~~l~~~~-dg~i~iwd~~~~~~~~~-------~---~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~- 854 (1068)
.+|+++++-. ++.+.++.+........ + ...+...-.+||+| ..+.|..+-+-.-+.||...-+. .
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888887765 67787777664422211 1 11245678999999 56666667766667776655322 1
Q ss_pred -eeeeccc-------ccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCC
Q 001490 855 -ISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 925 (1068)
Q Consensus 855 -~~~~~~h-------~~~V~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 925 (1068)
+.....+ -..|.++.|.+ .+.+|+-+.+++.+.-.|....-...........+-...-.....++..++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 1111111 23467788876 45667777778877777776543211111111222221113456677888887
Q ss_pred EEEEEeCCeEEEE
Q 001490 926 RFLLVHETHLAIY 938 (1068)
Q Consensus 926 ~la~~~d~~i~vw 938 (1068)
+-++++.+-.+.+
T Consensus 297 lYIvSEPnlfy~F 309 (316)
T COG3204 297 LYIVSEPNLFYRF 309 (316)
T ss_pred EEEEecCCcceec
Confidence 7777666555444
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.06 E-value=1.4 Score=47.96 Aligned_cols=253 Identities=10% Similarity=0.035 Sum_probs=105.7
Q ss_pred CccEEEEEE-cCCcEEEEeCCCCCc----eEEecC---CC----CcEEEEEEccCCCEEEEEee--CCCCceeEEEEeCC
Q 001490 474 NIHFIFSIS-VDGKIKAWLYDSLGA----RVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES 539 (1068)
Q Consensus 474 ~~~~l~s~s-~dg~i~vwd~~~~~~----~~~~~~---~~----~~i~~~~~s~d~~~l~~~~~--~~~~~~~i~~wd~~ 539 (1068)
+.++|+..+ ..++|.+.|..+... ...+.. .. .....+-.-|+|+.++++-. ++++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 678899999874321 122221 00 12233445589988887654 34556778899988
Q ss_pred CCeeeeEEeccccccCCeEEEEEecCCCEEEEEE--------------------CCCeEEEEEcCCCeEEEEEeCCCCCC
Q 001490 540 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 599 (1068)
Q Consensus 540 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 599 (1068)
+.+.............--+.+.+.|..+.+++.. .-.++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888777665442223456677888888888764 23689999999999999998764322
Q ss_pred CCceEEEec--CCCEEEEEE-CCCeEEEEEC-CCCcee--eeccccccceeeeEEcCC-ccccccccccCeeeecCCCCC
Q 001490 600 ENPRICFNK--NGTLLAVIA-NENRIKILET-PESNSV--DAAGVLSDNLRKLSVNPI-STVTGAGIANGSVSVNEDPKE 672 (1068)
Q Consensus 600 ~v~~v~~s~--~~~~l~~~~-~dg~i~iwd~-~~~~~~--~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 672 (1068)
....+.|.. +..+-++++ -..+|..|-- ..+... ..+......+..-.+-+. ....++.+-...+.+ |.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i----Sl 321 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI----SL 321 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-----T
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE----cc
Confidence 344566654 444433332 2344444433 433211 011100000000000000 000000111112222 45
Q ss_pred Ccccc-eeecccccceeecccccCCc-ccceeecCC------------ccccccEEEEEEecCCceEEEeec
Q 001490 673 DVKPE-ISVEAENKSEVEKPLFARPS-ECQSLLLPS------------KVKANKISRLTYNNGGQAIFALAS 730 (1068)
Q Consensus 673 ~~~~l-~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~------------~~~~~~i~~l~~s~~g~~l~~~~~ 730 (1068)
|.++| +++-..|.+|.||+...... ...++.+-. ..-.+...-+..|-||+++..+.+
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 55555 66778899999997643322 222221111 111223467788889988876654
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.93 E-value=1.5 Score=47.62 Aligned_cols=249 Identities=8% Similarity=0.002 Sum_probs=105.4
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCC----CeeeeEEeccccc----cCCeEEEEEecCCCEEEEE--E----CCCeEEEE
Q 001490 516 NGRRLFSCGTSKEGESFLVEWNESE----GAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAA--G----DDHVIKIW 581 (1068)
Q Consensus 516 d~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~--s----~dg~i~iw 581 (1068)
+.++|+..+-. .++|++.|+.+ .++.+++...... -.....+..-|+|+.++++ . .-|.+.+.
T Consensus 86 ~Rr~Li~PgL~---SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 86 ERRYLILPGLR---SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -S-EEEEEBTT---T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred cCCcEEeeeec---cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 45677776532 45699999873 4555555541111 1223445556888888884 3 33568899
Q ss_pred EcCCCeEEEEEeCCCC-CCCCceEEEecCCCEEEEEE--------------------CCCeEEEEECCCCceeeeccccc
Q 001490 582 DMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIA--------------------NENRIKILETPESNSVDAAGVLS 640 (1068)
Q Consensus 582 d~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~ 640 (1068)
|-++.+.....+.... ..--..+-+.|..+.+++.. ...++.+||+.+.+.++++.-..
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 9988888887765432 22345677888888888752 24689999999999988887554
Q ss_pred cc--eeeeEEcCCcc--ccccccccCeeeecCCCCCCcccceeecccccceeecc-cccCCcccceeecCCc--------
Q 001490 641 DN--LRKLSVNPIST--VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP-LFARPSECQSLLLPSK-------- 707 (1068)
Q Consensus 641 ~~--i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~~~~~~~~~-------- 707 (1068)
+. ...+.|.++.. ...++.. ...+|-.|-. +...-.....+.++..
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~a---------------------Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCA---------------------LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE-----------------------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CCCceEEEEecCCCCccceEEEEe---------------------ccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence 33 33444433221 1111111 1122221111 1110000111111111
Q ss_pred -------cccccEEEEEEecCCceEEEeec-CccEEEEeccCCccC-CCccceeccCCcccCCCCCCceeeecCCCCCCC
Q 001490 708 -------VKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLT-LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 778 (1068)
Q Consensus 708 -------~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1068)
.-..-|+.+.+|.|.++|..... .|.++.||+..+... ..+.......+.--+. ....+..-.
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~--------~~v~g~~l~ 373 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH--------PVVKGKRLR 373 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B----------TTS------
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCC--------ccccccccC
Confidence 11345789999999999876665 699999999875421 1111111000000000 000111133
Q ss_pred CCeeEEEEecCCCEEEEE
Q 001490 779 EAVPCFALSKNDAYLFSA 796 (1068)
Q Consensus 779 ~~v~~l~~s~dg~~l~~~ 796 (1068)
+...-+.+|.||+.|.+.
T Consensus 374 GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp S----EEE-TTSSEEEEE
T ss_pred CCCCeEEEccCCeEEEEE
Confidence 455778999999988765
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.78 E-value=1.2 Score=43.48 Aligned_cols=135 Identities=14% Similarity=0.117 Sum_probs=77.7
Q ss_pred cccEEEEEEcCCCCcEEEEEEe-CC---------CcEEEEECCCCceeeEeccCCCcEEEEeeeecCCcc-EEEEEEcCC
Q 001490 417 VGNVNDLAFSAPCKQISVITCG-DD---------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDG 485 (1068)
Q Consensus 417 ~~~v~~l~~s~d~~~~~l~s~~-~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~-~l~s~s~dg 485 (1068)
..+.+.-..+|+|+ ++ .|. .| |.++.|-. +..+..+...-+.-+.++|. .+.+ +.++-+.+-
T Consensus 108 knR~NDgkvdP~Gr--yy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNY 180 (310)
T ss_pred hcccccCccCCCCc--ee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCcccccc--ccCcEEEEEccCce
Confidence 34566777899999 43 232 11 22333321 11111111122223445564 2333 445556677
Q ss_pred cEEEEeCC--CCC-----ceEEecC----CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccc
Q 001490 486 KIKAWLYD--SLG-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 554 (1068)
Q Consensus 486 ~i~vwd~~--~~~-----~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 554 (1068)
.|.-||.+ ++. .+..++. .......+++..+|++.+++.. .++|...|+.+|+.+..+.-..
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt--- 253 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT--- 253 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---
Confidence 78888843 222 2222222 1112345666778888877765 4579999999999999998877
Q ss_pred CCeEEEEEecC
Q 001490 555 NSVSVVHFDTA 565 (1068)
Q Consensus 555 ~~v~~~~~~~~ 565 (1068)
..+++++|...
T Consensus 254 ~qitsccFgGk 264 (310)
T KOG4499|consen 254 PQITSCCFGGK 264 (310)
T ss_pred CceEEEEecCC
Confidence 88999999754
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.71 E-value=2.9 Score=42.68 Aligned_cols=193 Identities=11% Similarity=0.074 Sum_probs=115.4
Q ss_pred cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490 712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 791 (1068)
Q Consensus 712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 791 (1068)
-...+.|..+|..+-+++..|.-.| +.+++.+|+......++. ..--..+++..|.-
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d~l 102 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLPP---RYFGEGITILGDKL 102 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-TT---T--EEEEEEETTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECCc---cccceeEEEECCEE
Confidence 3567888888887777777664332 234555665555555532 33344566666655
Q ss_pred EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccc-----cCeE
Q 001490 792 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRVT 866 (1068)
Q Consensus 792 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~-----~~V~ 866 (1068)
+..+--++...+||..+.+.+.++.- .+.=..++ . |++.|+.......++++|..+-+....+.... ..++
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE
T ss_pred EEEEecCCeEEEEccccceEEEEEec-CCcceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE
Confidence 55566689999999999999988863 34555666 3 56666666667789999998877666654321 2345
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCC-------CcccCCCCceEEEEeeCCCEEEEEeC
Q 001490 867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLVHE 932 (1068)
Q Consensus 867 ~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~spdg~~la~~~d 932 (1068)
-+.+- +|...|=.=....|..-|..+|+.....-+..+. .......-...+|+.|....+.+.+.
T Consensus 179 ELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 179 ELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 56775 6777776666667888888888765543222111 11111235789999998877776443
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.61 E-value=0.032 Score=39.69 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcc
Q 001490 311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 345 (1068)
Q Consensus 311 ~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~ 345 (1068)
..|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 4799999999998 8999999999999999 5543
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=95.50 E-value=3.4 Score=45.05 Aligned_cols=155 Identities=11% Similarity=0.007 Sum_probs=89.3
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001490 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 897 (1068)
Q Consensus 819 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~ 897 (1068)
...+.++.+.| ++.+++++. .|.++.-.-..++.-... ..-...++++.+.++++.++. +..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc-
Confidence 45788999999 777766554 564443211122211111 223457899999999987765 4567654323333321
Q ss_pred eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeec--cCCCcCEEEEEEecCCCEEEEEECC
Q 001490 898 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD 975 (1068)
Q Consensus 898 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~d 975 (1068)
...+..+.... ...+..+++.+++..++++.+|.+. ...+.|+.-.... ..-......+.|..+++.+++ +..
T Consensus 248 -W~~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 322 (334)
T PRK13684 248 -WSKPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR 322 (334)
T ss_pred -cccccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence 11111111100 1247789999999988888888665 3445555433322 112346788888888777664 467
Q ss_pred CcEEEEE
Q 001490 976 GTLSIHE 982 (1068)
Q Consensus 976 g~v~vwd 982 (1068)
|.|.-|+
T Consensus 323 G~il~~~ 329 (334)
T PRK13684 323 GVLLRYV 329 (334)
T ss_pred ceEEEec
Confidence 8887665
No 414
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.43 E-value=6 Score=44.51 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=42.0
Q ss_pred EEEEeeCCCEEEEEeC--CeEEEEECCCc--eeeeeeccCCCcCEEEEEEecCCCEEEEEEC
Q 001490 917 HIQFHKDQTRFLLVHE--THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFV 974 (1068)
Q Consensus 917 ~~~~spdg~~la~~~d--~~i~vwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 974 (1068)
-+||.|..+.+|++++ +.|.||.+... ..+.++.-....+...++|-.|..+|+..|.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 4799999999998644 67999998642 2233333344778889999999887776653
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.39 E-value=3.1 Score=50.32 Aligned_cols=160 Identities=15% Similarity=0.127 Sum_probs=95.6
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEE-------------EEeeeecCCccEEEEEEc----------CCcEEE
Q 001490 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY-------------SLCPHAKENIHFIFSISV----------DGKIKA 489 (1068)
Q Consensus 433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-------------~i~~~~~~~~~~l~s~s~----------dg~i~v 489 (1068)
.++.++.|+.+.-.|.++|+.+..+. ..+.|. .+.-.|.-.+..++.++. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 57778889999999999999987763 222221 001001001225555542 688999
Q ss_pred EeCCCCCceEEecCCC---------C--------cE-EEEEEccCCCEEEEEeeC--------------CCCceeEEEEe
Q 001490 490 WLYDSLGARVDYDAPG---------L--------GC-TRMAYSANGRRLFSCGTS--------------KEGESFLVEWN 537 (1068)
Q Consensus 490 wd~~~~~~~~~~~~~~---------~--------~i-~~~~~s~d~~~l~~~~~~--------------~~~~~~i~~wd 537 (1068)
+|..+++....+.... + .+ ..+++.++...++....+ +.-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 9999999887654210 0 11 234556655555543221 01135577788
Q ss_pred CCCCeeeeEEeccc--ccc----CCeEEEEEec-CCC---EEEEEECCCeEEEEEcCCCeEEEEEe
Q 001490 538 ESEGAIKRTYQGLQ--LQH----NSVSVVHFDT-AKD---QILAAGDDHVIKIWDMNKVQLLTTID 593 (1068)
Q Consensus 538 ~~~~~~~~~~~~~~--~~~----~~v~~~~~~~-~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~ 593 (1068)
.++|+..-.++... .-. ....-+.+.. +|+ .++.++.+|.++++|.++|+.+...+
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 89998887776522 000 1111122322 453 67889999999999999999887654
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.39 E-value=0.071 Score=37.95 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.6
Q ss_pred CcceEEEEECCCCCEEEEEeCCcEEEEEEcc
Q 001490 372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 402 (1068)
Q Consensus 372 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~ 402 (1068)
...|.+++|+|...+||.++.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999983
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.18 E-value=3.5 Score=40.37 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=39.2
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeC
Q 001490 783 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 829 (1068)
Q Consensus 783 ~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 829 (1068)
.+++..+|.+.++.- .++|.-.|..+|+.+.++.-+...|++++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 455666777666654 68999999999999999999999999999963
No 418
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.15 E-value=0.057 Score=52.28 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=68.6
Q ss_pred CEEEEE-eCCeEEEEEccCc-eeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccc-cCeEE
Q 001490 791 AYLFSA-SGGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTG 867 (1068)
Q Consensus 791 ~~l~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~ 867 (1068)
.-+++| ++|.|.+|...-. .....+......|.++.-.-+++.+..++..||.|+.|++.-++.+...-.|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 334444 4899999987622 11111222223333333333356699999999999999999988888877787 56666
Q ss_pred EEEcCCCCEEEEE--eCCCcEEEEECCC
Q 001490 868 LVFSDALNILVSS--GGDAQIFVWDVDG 893 (1068)
Q Consensus 868 l~~spdg~~l~s~--s~dg~i~iwd~~~ 893 (1068)
+..+..++.++++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666666777777 7777788887765
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.85 E-value=0.68 Score=53.58 Aligned_cols=125 Identities=10% Similarity=0.089 Sum_probs=77.6
Q ss_pred EecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec-ccccCeEEEEEc--CCCCEEEEEeCCCcEEEEE
Q 001490 814 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWD 890 (1068)
Q Consensus 814 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s--pdg~~l~s~s~dg~i~iwd 890 (1068)
++...-...+-+.-|. -++..++-+...++.|||...+.....-. ...+.|..+.|. |||+.+++.|-.+.|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3443444555566665 55555555555689999999886432222 346789999885 7999999999999999986
Q ss_pred CCC----CceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEEC
Q 001490 891 VDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 940 (1068)
Q Consensus 891 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~ 940 (1068)
-.. ........++...-....+.+|....|.++|.+++ +..+.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 431 11111112222111111113688999999998555 45667888874
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.81 E-value=5.9 Score=43.99 Aligned_cols=138 Identities=15% Similarity=0.168 Sum_probs=78.5
Q ss_pred CCeeEEEEecCCCEEEEEe------------C-CeEEEEEccC--ce--eEEEecCCCCCeEEEEEeCCCCCEEEEEECC
Q 001490 779 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD 841 (1068)
Q Consensus 779 ~~v~~l~~s~dg~~l~~~~------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 841 (1068)
.....|+|.++|+++++.. . +.|.+++-.+ |+ ....+.......+.+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999999887752 1 2677776432 32 2234433344568899998 77 444 4444
Q ss_pred CeEEEE-EcCC-----ce--e-eeeecc----cccCeEEEEEcCCCCEEEEEeCC-------------------CcEEEE
Q 001490 842 STILIY-NARS-----SE--V-ISKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVW 889 (1068)
Q Consensus 842 g~v~iw-d~~~-----~~--~-~~~~~~----h~~~V~~l~~spdg~~l~s~s~d-------------------g~i~iw 889 (1068)
.|..| +... ++ . +..+.. +......++|.|||.+.++.+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34434 4421 12 1 122322 13447789999999887766521 334444
Q ss_pred ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE
Q 001490 890 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 929 (1068)
Q Consensus 890 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 929 (1068)
+.++++. ..+. .+.. ....++|+++|+++++
T Consensus 170 ~pdg~~~---e~~a--~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 170 NPDGGKL---RVVA--HGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred ecCCCeE---EEEe--cCcC----CCccceECCCCCEEEE
Confidence 5544331 1111 2221 2567999999999877
No 421
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.59 E-value=3.8 Score=41.25 Aligned_cols=211 Identities=11% Similarity=0.085 Sum_probs=130.3
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 001490 821 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 900 (1068)
Q Consensus 821 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~ 900 (1068)
.-..++-+| ||..-.++...|.|---|..+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677788 88888888888888888888988765555555556778889999887764443 46666666655433
Q ss_pred eeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEE
Q 001490 901 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 980 (1068)
Q Consensus 901 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~v 980 (1068)
++....+.. .......|.++|.+-.++..|.---.|..++. +..+..........++..|||...++.-.+..|..
T Consensus 139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~-i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNV-ISVFPAPQGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCc-eeeeccCCCCCCcceEECCCCcEEEEeccccceEE
Confidence 222222222 35778999999999988644322222221111 11112223445677899999999888777888888
Q ss_pred EEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccCCCCc
Q 001490 981 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus 981 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
.|..++... .+.....+..+ +..+-.+| -+..-++....|.++-+|.+... |..-|-+.
T Consensus 215 idp~~~~ae-v~p~P~~~~~g-------sRriwsdp-ig~~wittwg~g~l~rfdPs~~s--W~eypLPg 273 (353)
T COG4257 215 IDPFAGHAE-VVPQPNALKAG-------SRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS--WIEYPLPG 273 (353)
T ss_pred cccccCCcc-eecCCCccccc-------ccccccCc-cCcEEEeccCCceeeEeCccccc--ceeeeCCC
Confidence 887777222 22211111111 12244455 36777777777788877776544 77766544
No 422
>PHA03098 kelch-like protein; Provisional
Probab=94.57 E-value=1.5 Score=51.80 Aligned_cols=188 Identities=10% Similarity=-0.026 Sum_probs=95.7
Q ss_pred cCCCEEEEEe-C------CeEEEEEccCceeEEE--ecCCCCCeEEEEEeCCCCCEEEEEECCC-----eEEEEEcCCce
Q 001490 788 KNDAYLFSAS-G------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSE 853 (1068)
Q Consensus 788 ~dg~~l~~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~ 853 (1068)
.++..++.|+ + ..+..||..+.+-... +.........++ - ++++++.|+.++ .+..||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4555555554 2 2477888776543221 111111222222 2 678888888763 57788887654
Q ss_pred ee--eeecccccCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCC
Q 001490 854 VI--SKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 925 (1068)
Q Consensus 854 ~~--~~~~~h~~~V~~l~~spdg~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 925 (1068)
-. ..+....... +++ .-+++..+.||.+ ..+..||..+++......+. ... ....+..-+++
T Consensus 370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r------~~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISH------YGGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--ccc------cCceEEEECCE
Confidence 22 1221111111 122 2367777877742 35888998876543321111 111 11223344666
Q ss_pred EEEEEe-C--------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCcEE
Q 001490 926 RFLLVH-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 989 (1068)
Q Consensus 926 ~la~~~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~ 989 (1068)
+.+.|+ + ..+.+||..+++....-.......-.++ ...+++.++.||.+ ..|.+||..+.+..
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 666542 1 2388999987765432111111111112 22377777777754 46888888877654
No 423
>PHA03098 kelch-like protein; Provisional
Probab=94.48 E-value=1.6 Score=51.68 Aligned_cols=153 Identities=8% Similarity=-0.013 Sum_probs=73.7
Q ss_pred CccEEEEEEcCC-----cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC--ceeEEEEeCCCCeeeeE
Q 001490 474 NIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT 546 (1068)
Q Consensus 474 ~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~ 546 (1068)
++.+.+.|+.++ .+..||..+.+-...-..........+..-+++..+.|+....+ -..+..||+.+++....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 556777777652 46677766544222111111111111223456666666632221 24688999887654332
Q ss_pred EeccccccCCeEEEEEecCCCEEEEEECC--------CeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490 547 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 618 (1068)
Q Consensus 547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 618 (1068)
-.... ..... ++ ...++...+.|+.+ ..+.+||..+++....-..... .....+..-++++++.|+.
T Consensus 422 ~~~p~-~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence 11111 01111 22 22345555556532 2388899888765543221111 1111122236777777765
Q ss_pred C-----CeEEEEECCCCc
Q 001490 619 E-----NRIKILETPESN 631 (1068)
Q Consensus 619 d-----g~i~iwd~~~~~ 631 (1068)
+ +.+.+||..+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467778877653
No 424
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.28 E-value=11 Score=41.95 Aligned_cols=281 Identities=12% Similarity=0.139 Sum_probs=142.6
Q ss_pred cCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC---C--CCCEEEEEeCC
Q 001490 319 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS---P--DGSLLGVAYSK 393 (1068)
Q Consensus 319 spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s---p--dg~~las~~~d 393 (1068)
+++++..+++||..|.++||+...+..... .+ .+-..-+.+|-.++.- + +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l--------------llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL--------------LLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-cE--------------EEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344555789999999999999865442211 00 0011123567666643 2 2345555 466
Q ss_pred cEEEEEEccCCCcc------cceEEEccccc--cEEEEEEcC----CCCcEEEEEEeCCCcEEEEECCCCceeeEecc--
Q 001490 394 HIVQLYAYHGGSDA------RQQLEIDAHVG--NVNDLAFSA----PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-- 459 (1068)
Q Consensus 394 ~~i~vwd~~~~~~~------~~~~~~~~h~~--~v~~l~~s~----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-- 459 (1068)
+.+.||.+...... .....+..|.- ....++.-| .|+. ++..-+-||.+.+++-+.-...+.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 67888888322111 11112223332 122222222 2233 788889999999999554433333333
Q ss_pred CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce-----------------------EEecCCCC--cEEEEEEc
Q 001490 460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------------------VDYDAPGL--GCTRMAYS 514 (1068)
Q Consensus 460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------------~~~~~~~~--~i~~~~~s 514 (1068)
..++ +++.+.. +.+++++.+..+..|........ ..+...+. .+..+.++
T Consensus 176 lPgP---l~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGP---LCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcC---eEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 3344 4444443 37888888888888865321100 01111111 23333444
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec----CC---CEEEEEECCCeEEEEEcCCCe
Q 001490 515 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT----AK---DQILAAGDDHVIKIWDMNKVQ 587 (1068)
Q Consensus 515 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~s~dg~i~iwd~~~~~ 587 (1068)
.....+++-+ +..+...+. +|......+- . ..+.....|.. ++ ..++.++.++++.||.=.+
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-- 319 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-- 319 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--
Confidence 3444444443 445777765 4544332222 2 02222222222 22 2488899999999986443
Q ss_pred EEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCce
Q 001490 588 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 632 (1068)
Q Consensus 588 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 632 (1068)
++-........-.+....|..-...+++-+.+|.+.+-=+.+...
T Consensus 320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 333222211111111122223355788888899998877766543
No 425
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.26 E-value=4.9 Score=42.56 Aligned_cols=189 Identities=10% Similarity=0.055 Sum_probs=104.7
Q ss_pred eeEEEEecCCCEEEEEe-----C--------CeEEEEEccCceeEEEecCC------CCCeEEEEEeCCCC----CEEEE
Q 001490 781 VPCFALSKNDAYLFSAS-----G--------GVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI 837 (1068)
Q Consensus 781 v~~l~~s~dg~~l~~~~-----d--------g~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~las 837 (1068)
|..+...++|++-+.=. . -+|.+||+.+.+.++++.-+ .+.+..+++...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 44566666666555422 1 26889999999988876532 34678888876322 24444
Q ss_pred EE-CCCeEEEEEcCCceeeeeeccc-------------------ccCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCC
Q 001490 838 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW 894 (1068)
Q Consensus 838 g~-~dg~v~iwd~~~~~~~~~~~~h-------------------~~~V~~l~~sp---dg~~l~s~s~dg~i~iwd~~~~ 894 (1068)
.. ..+-|.|+|+.+++..+.+..+ .+.+..++.+| ||++|....-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 43 3358999999988754443321 13366677765 677777666554 245554431
Q ss_pred ceee-----ee----eeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCce---eeeee-ccCC-CcCEEE
Q 001490 895 GIQT-----CR----SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQW-FPIS-SVPISQ 959 (1068)
Q Consensus 895 ~~~~-----~~----~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~---~~~~~-~~~h-~~~v~~ 959 (1068)
.... .. .++.. +... .....++++++|.+..+ ...+.|..|+..+.- ....+ .... -..+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 1110 00 00111 0000 14567899999998888 678899999988621 11111 2222 357788
Q ss_pred EEEec--CCCEEEEEE
Q 001490 960 ATFSC--DCRMVFTSF 973 (1068)
Q Consensus 960 l~fs~--dg~~l~t~~ 973 (1068)
+.+.+ +|.+.+.+.
T Consensus 239 ~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEE-T--TS-EEEEE-
T ss_pred eeeccccCceEEEEEC
Confidence 89988 777666553
No 426
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.25 E-value=17 Score=43.99 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=65.6
Q ss_pred EEEecCCCEEEEEeCCeEEEEEccCceeEEEec--CCCCCeEEEEEeCCCCCEEEEEECCCeEEE--EEcCCceeeeeec
Q 001490 784 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKLE 859 (1068)
Q Consensus 784 l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~i--wd~~~~~~~~~~~ 859 (1068)
.|+.|-..++.+|-+..+++||+...+.++... .....|+.+.+ .+..+++|...-.|.+ |+-...+ +..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~-l~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQ-LIVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCe-EEEEe
Confidence 466687778888889999999998877766543 33557778877 4567777876655555 4444333 33343
Q ss_pred c--cccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001490 860 G--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892 (1068)
Q Consensus 860 ~--h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~ 892 (1068)
. -...|+++.+-. -..+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLD-YDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEec-CCceeeccccCcEEEEECC
Confidence 2 223466666654 4456666666655555543
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.18 E-value=1.1 Score=52.05 Aligned_cols=113 Identities=13% Similarity=0.169 Sum_probs=78.1
Q ss_pred cEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec-cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC----
Q 001490 419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---- 493 (1068)
Q Consensus 419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~---- 493 (1068)
..+-+.-|.-++ ..+.-+....+.|||...+.....-. ...+.|..+.|...++++.+++.+-.+.|.++--.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555566 44444445679999998887554332 35789999999999999999999999999998431
Q ss_pred -CCCc----eE--EecC-CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001490 494 -SLGA----RV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 539 (1068)
Q Consensus 494 -~~~~----~~--~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~ 539 (1068)
.... .. .+.. ..++|....|.++|..++.++. .+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECCC
Confidence 1111 11 1222 3368889999999988877643 58887743
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=2.8 Score=48.27 Aligned_cols=183 Identities=12% Similarity=0.122 Sum_probs=98.1
Q ss_pred eEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee----cccccCeEEEEEcCCCC
Q 001490 800 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL----EGHSKRVTGLVFSDALN 875 (1068)
Q Consensus 800 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~----~~h~~~V~~l~~spdg~ 875 (1068)
.|+||++. |+.+.++.-..+.+..+.|+. ..-|++...+|++++|++. |+.+... +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 47888875 666555544445888999995 4566668899999999986 3333221 22233466666666664
Q ss_pred EEEEEeCCCcEE-EEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE--EEEEeC--CeEEEEECCCceeeeeec
Q 001490 876 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTCLKQWF 950 (1068)
Q Consensus 876 ~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--la~~~d--~~i~vwd~~~~~~~~~~~ 950 (1068)
.+.+. +|.+. +-+++... .+.++...+... .-.+-+.-+++.. +...-+ -...++-.+.+......+
T Consensus 141 avlt~--~g~v~~i~~~~~~~---~~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPK---LRKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcch---hhhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 44333 33333211 111111111111 1122222222211 111111 011122222211111001
Q ss_pred cCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEecc
Q 001490 951 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 994 (1068)
Q Consensus 951 ~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 994 (1068)
......+..+..||+.++|+--..+|.|.+-+.+..+..+.+..
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 11136788899999999999999999999999998888888773
No 429
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.11 E-value=11 Score=42.11 Aligned_cols=201 Identities=12% Similarity=0.017 Sum_probs=108.7
Q ss_pred EecCCCEEEEEeCCeEEEEEccCceeEEEecCCC--CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccc-
Q 001490 786 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 862 (1068)
Q Consensus 786 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~- 862 (1068)
..-||+..+...+|.|.-.|..+++.+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4456766666668888888988888766544332 3344444444 565 6668889999999998999887776555
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe--CCeEEEEEC
Q 001490 863 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 940 (1068)
Q Consensus 863 ~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--d~~i~vwd~ 940 (1068)
-.+..-..-.++..++ .+.++.+...+-.+++..-.......... .+..-....++...+... ++.+.-.|+
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222222333222 22556666666665543221111110000 011111134444444433 456777777
Q ss_pred CCceeeeeeccCCCcC---EEEEEEec-----CCCEEEEEECCCcEEEEEcCCCcEEEEecc
Q 001490 941 EELTCLKQWFPISSVP---ISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 994 (1068)
Q Consensus 941 ~~~~~~~~~~~~h~~~---v~~l~fs~-----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 994 (1068)
.+|...-.....+... +....... .+.-+..++.++.+.-.|..+|+.+.++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 7777665422111111 10011111 112235666788888999999999988874
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.05 E-value=6.4 Score=47.29 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=38.4
Q ss_pred cCcEEEEecCCCcceeeeeeeeeecc---ccccceeeeee-cCCCcceEEEEECCCCCEEEEEeCCcEEEEEEc
Q 001490 332 VGDTGLWDVNSGQKLFIRNFKVWDIG---ACSMLFKTALV-RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 401 (1068)
Q Consensus 332 dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l-~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~ 401 (1068)
|+.+.+||-..... ...+++.-+-. .....++.... ......|..|.+||+|++||..+..| |.|-.+
T Consensus 41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 46777777655433 22233322211 11122232222 23356899999999999999998877 444444
No 431
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.03 E-value=0.19 Score=48.78 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=63.6
Q ss_pred CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEE-EcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-
Q 001490 384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG- 461 (1068)
Q Consensus 384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~-~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~- 461 (1068)
++.+++|+.+|.|.+|++..-..... ....-...|.++- -..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d--~~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSD--RVCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHH--hhhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeeccccC
Confidence 56788999999999999873211110 0111122333332 223344 67888899999999999888887776676
Q ss_pred CcEEEEeeeecCCccEEEEE--EcCCcEEEEeCCC
Q 001490 462 APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 494 (1068)
Q Consensus 462 ~~v~~i~~~~~~~~~~l~s~--s~dg~i~vwd~~~ 494 (1068)
.++....... .+.++.++ |.|..++.|++..
T Consensus 146 ~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence 4444333322 33455555 6666666666543
No 432
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.99 E-value=25 Score=45.06 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=90.4
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~ 386 (1068)
+.|...++.|.-+|+|.++ = -.|+.++.||..+++ |..- -..-...+..++-.-||+.
T Consensus 359 kaH~A~LTgv~~~~~ge~l-R--lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~l 416 (1774)
T PF11725_consen 359 KAHIAHLTGVHTDPDGEQL-R--LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKL 416 (1774)
T ss_pred HHHHHHhhccccCCCCCeE-E--eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCce
Confidence 3566778888889999854 2 246888888876542 4310 0112345666666667776
Q ss_pred EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc------e--eeEec
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------R--TYSFE 458 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~--~~~~~ 458 (1068)
.| =+.+ .|-|+..+.... ..-..+.+...+++|.- .+.++-....+.+|++.... . ...+.
T Consensus 417 YA-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~ 485 (1774)
T PF11725_consen 417 YA-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLA 485 (1774)
T ss_pred Ee-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeecc
Confidence 66 2222 244665554211 22345778888999983 36666666677999987541 1 12233
Q ss_pred cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCC
Q 001490 459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 494 (1068)
Q Consensus 459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~ 494 (1068)
+-.....+|.++. + .|+++..+|.++.=++..
T Consensus 486 dG~a~A~~VgLs~--d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 486 DGKAQAQSVGLSN--D--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred CCchhhhheeecC--C--eEEEEeCCCCEEeccccc
Confidence 3333455566643 3 688889999888776654
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.89 E-value=17 Score=43.73 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=56.1
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEccC-ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceee
Q 001490 777 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 855 (1068)
Q Consensus 777 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 855 (1068)
..-.|..+.++|+|++||..+...|.|..+.. +..-..+.+....|.|=.+.- +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 45688999999999999999877777766642 111111222222222222211 11111
Q ss_pred eeecccccCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 001490 856 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW 894 (1068)
Q Consensus 856 ~~~~~h~~~V~~l~~spd---g~~l~s~s~dg~i~iwd~~~~ 894 (1068)
...+...|..+.|+|. +..|+.-..|+++++||+...
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 0123445777888875 477888888888888888653
No 434
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.89 E-value=2.3 Score=41.54 Aligned_cols=150 Identities=11% Similarity=0.098 Sum_probs=82.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe----CC---eEEEE---ECC--C
Q 001490 875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ET---HLAIY---EAE--E 942 (1068)
Q Consensus 875 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----d~---~i~vw---d~~--~ 942 (1068)
..|+.+.....|.+|++...+......+.+. +.|..+.++.-|.+|++-+ .. .+++| +.. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 4444446677799999995554333333333 3688999999999999932 12 45654 332 1
Q ss_pred ceeeeeeccCC---------------------CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE-EEEeccccccCC
Q 001490 943 LTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILSTAYLRP 1000 (1068)
Q Consensus 943 ~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~ 1000 (1068)
...++....|| ..++.+++-.|-..-|+.|+ ++.+.+|.+..... ...+....+...
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence 22222212232 34556666666433455454 56899998876655 222221112111
Q ss_pred C-CccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001490 1001 T-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus 1001 ~-~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
- .+...+.+.-+++. ++++|..+ +-.+++.++
T Consensus 181 l~~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEEE---eeEEEEec-CCEEEEEEE
Confidence 1 12334556667777 35666555 447777765
No 435
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.86 E-value=9.1 Score=39.55 Aligned_cols=214 Identities=13% Similarity=0.141 Sum_probs=123.8
Q ss_pred cEEEEEEcCCCCcEEEEEEeCCCcEEEEECC------CC-ceeeEecc-----CCCcEEEEeeeecC------Cc----c
Q 001490 419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAKE------NI----H 476 (1068)
Q Consensus 419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~------~~-~~~~~~~~-----h~~~v~~i~~~~~~------~~----~ 476 (1068)
.-+.|+|+|.+. +-++....+...+||.. .. ..+-++.. .....+.+.|+... ++ .
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999987 66666677889999976 12 22333332 12345566554321 11 2
Q ss_pred EEEEEEcCCcEEEEeCCCCCc-----eEEecCC--CCcEEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCeee--e
Q 001490 477 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP--GLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R 545 (1068)
Q Consensus 477 ~l~s~s~dg~i~vwd~~~~~~-----~~~~~~~--~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~--~ 545 (1068)
.++.+++||+|.-|...-... ...+... ..-...+++.. .+.+|..+.. ..++|.++|-.=.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997532222 1222211 22334555543 3566666543 2567888875422211 0
Q ss_pred EEeccccc--cCC--eE------EEEE---ecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec----
Q 001490 546 TYQGLQLQ--HNS--VS------VVHF---DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 608 (1068)
Q Consensus 546 ~~~~~~~~--~~~--v~------~~~~---~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 608 (1068)
.+...... ..+ |. -+.| .++.+.=+.|..-|.|-+||. .|+.++++...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 11111000 000 10 1111 122222233445578999997 588888887666666677888766
Q ss_pred --CCCEEEEEECCCeEEEEECCCCceeeeccc
Q 001490 609 --NGTLLAVIANENRIKILETPESNSVDAAGV 638 (1068)
Q Consensus 609 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1068)
.|.+|+---.||+|..+|..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 466777667799999999998887777664
No 436
>PHA02790 Kelch-like protein; Provisional
Probab=93.85 E-value=3.1 Score=48.11 Aligned_cols=185 Identities=12% Similarity=-0.025 Sum_probs=95.4
Q ss_pred cCCCEEEEEe-C-----CeEEEEEccCceeEE--EecCCCCCeEEEEEeCCCCCEEEEEECCC--eEEEEEcCCcee--e
Q 001490 788 KNDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV--I 855 (1068)
Q Consensus 788 ~dg~~l~~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~--~ 855 (1068)
.++..+++|+ + ..+..||..+.+-.. .+....... +++ .- ++.+.++|+.++ .+..||..+++- +
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455555554 2 246778877654222 222111122 222 23 788888888643 688888766532 2
Q ss_pred eeecccccCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeC
Q 001490 856 SKLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 932 (1068)
Q Consensus 856 ~~~~~h~~~V~~l~~spdg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d 932 (1068)
..+.........+ .-+|+..+.||.++ .+..||..+.+......+.... ....+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--
Confidence 2232111111222 23678888888654 4778888776543322222111 1122334566666665
Q ss_pred CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCcE
Q 001490 933 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 988 (1068)
Q Consensus 933 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~ 988 (1068)
|.+.+||..+.+....-...+. +...-+..-+|+..+.||.+ .+|..||..+++.
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 3577899887665432111111 11112223477788888754 3466777776654
No 437
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.85 E-value=20 Score=43.40 Aligned_cols=114 Identities=11% Similarity=-0.072 Sum_probs=71.4
Q ss_pred EEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCC-CcCEEEEEEecCCCEEEEEECCCcEEEEEcCC-CcEEEEeccc
Q 001490 918 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRILST 995 (1068)
Q Consensus 918 ~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~-~~~~~~~~~~ 995 (1068)
.+..|-..+++++....+++||+...+.++.....+ ...|+.+.+ .+..+++|...-.|.++.... ++.+..+. .
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence 455676778888888899999998877776544444 556666665 445677776655555544443 22333333 0
Q ss_pred cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 001490 996 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1043 (1068)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~ 1043 (1068)
. ..+-++.++.+- |-+.+|.|+.=|.+.+-+++..-...
T Consensus 1016 D-------~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~~e~ 1054 (1205)
T KOG1898|consen 1016 D-------PVPRHVTALELL--DYDTVAGADRFGNIAVVRIPPDVSEE 1054 (1205)
T ss_pred C-------CccceeeEEEEe--cCCceeeccccCcEEEEECCCcchhh
Confidence 1 111223334333 56889999999999999998765433
No 438
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.72 E-value=14 Score=41.13 Aligned_cols=149 Identities=8% Similarity=0.030 Sum_probs=85.8
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee--eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--
Q 001490 822 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-- 897 (1068)
Q Consensus 822 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~-- 897 (1068)
...+..++ ++.+++.|..-..++-||- |+. ...-......++++.|.+++.+++++ .+|.+ +|....+..-
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 7777776654433333432 221 11112234568999999998887755 56654 4444443211
Q ss_pred -eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeec--cCCCcCEEEEEEecCCCEEEEEEC
Q 001490 898 -TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFV 974 (1068)
Q Consensus 898 -~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~ 974 (1068)
....+...... ..+..+.|.+++..++++..|.+.... ..|+.-.... ..-......+.|.++++-+++| .
T Consensus 316 ~~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~ 389 (398)
T PLN00033 316 FDFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-N 389 (398)
T ss_pred cceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-C
Confidence 11111111111 147889999999999999988776664 3444332212 2224678899998888777755 7
Q ss_pred CCcEEEE
Q 001490 975 DGTLSIH 981 (1068)
Q Consensus 975 dg~v~vw 981 (1068)
+|.|.-|
T Consensus 390 ~G~il~~ 396 (398)
T PLN00033 390 DGVLLRY 396 (398)
T ss_pred CcEEEEe
Confidence 7876544
No 439
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.65 E-value=8.9 Score=38.72 Aligned_cols=245 Identities=12% Similarity=0.115 Sum_probs=142.1
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 391 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~ 391 (1068)
.-..|+-+|||. +-.+++..+.|---|-.+|+.... .-+.......|..-|||..-++-+
T Consensus 63 ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~y-------------------pLg~Ga~Phgiv~gpdg~~Witd~ 122 (353)
T COG4257 63 APFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETY-------------------PLGSGASPHGIVVGPDGSAWITDT 122 (353)
T ss_pred CccccccCCCCc-eEEecCccccceecCCCCCceEEE-------------------ecCCCCCCceEEECCCCCeeEecC
Confidence 567788999997 567888778888889999987643 234556677788889987666544
Q ss_pred CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeee
Q 001490 392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 471 (1068)
Q Consensus 392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 471 (1068)
.. -|.-.|-++.+..+-......-........|.+.|. +-+++. .| ++ | ++ .|
T Consensus 123 ~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~--lWFt~q-~G---~y----G----rL------------dP 175 (353)
T COG4257 123 GL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN--LWFTGQ-IG---AY----G----RL------------DP 175 (353)
T ss_pred cc-eeEEecCcccceEEeecccccCCCcccceeeCCCcc--EEEeec-cc---cc----e----ec------------Cc
Confidence 43 455566666543322212222234566677777776 444443 11 00 0 11 01
Q ss_pred cCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001490 472 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 551 (1068)
Q Consensus 472 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 551 (1068)
. .+.|++|+.. .+.....|+..|||..-++.-. .+.|-..|..++. -..+....
T Consensus 176 a-----------~~~i~vfpaP----------qG~gpyGi~atpdGsvwyasla----gnaiaridp~~~~-aev~p~P~ 229 (353)
T COG4257 176 A-----------RNVISVFPAP----------QGGGPYGICATPDGSVWYASLA----GNAIARIDPFAGH-AEVVPQPN 229 (353)
T ss_pred c-----------cCceeeeccC----------CCCCCcceEECCCCcEEEEecc----ccceEEcccccCC-cceecCCC
Confidence 0 1234445432 2224456777888876665433 3346677776662 22333222
Q ss_pred cccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490 552 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 630 (1068)
Q Consensus 552 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 630 (1068)
......+.+.-+|.+..-++....+.+..+|..+.. -......+....-.++.....++.-.+--..|.|.-+|-++.
T Consensus 230 ~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 230 ALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 112345556667788888888888889999887655 444454444445566666666655554444555655555543
No 440
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.61 E-value=4.3 Score=39.75 Aligned_cols=158 Identities=11% Similarity=0.142 Sum_probs=85.3
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEcc--CceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC------eEEEE---E
Q 001490 780 AVPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---N 848 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iw---d 848 (1068)
+...++-++.+.++++++.+.|.+|++. ..+...+|..- +.|..++++. .|++|++--.+. .+|+| +
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3344555554455555668889999988 44556667644 7899999999 899999854332 55665 2
Q ss_pred cC--Cceeee-eeccc---------------------ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee--eee
Q 001490 849 AR--SSEVIS-KLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC--RSL 902 (1068)
Q Consensus 849 ~~--~~~~~~-~~~~h---------------------~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~--~~~ 902 (1068)
.. ..+++. ++.|| +.++.+++..|-..-|+.|+ ++.+.+|.+........ ..+
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence 22 111111 22222 23566777777544455455 45599998876432110 011
Q ss_pred ecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEEC
Q 001490 903 QTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 940 (1068)
Q Consensus 903 ~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~ 940 (1068)
............+.-...+=-+.++|..++..++|..+
T Consensus 176 DFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred echhhhhheecCceEEEEEEEeeEEEEecCCEEEEEEE
Confidence 11000000000111112222356777777777777665
No 441
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=0.66 Score=55.45 Aligned_cols=146 Identities=9% Similarity=0.066 Sum_probs=95.3
Q ss_pred CCCeeEEEEecCCCEEEEEe--CC-eEEEEEccCceeEE-----EecC------CCCCeEEEEEeCCCCCEEEEEECCCe
Q 001490 778 QEAVPCFALSKNDAYLFSAS--GG-VISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST 843 (1068)
Q Consensus 778 ~~~v~~l~~s~dg~~l~~~~--dg-~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~ 843 (1068)
.-.+..++..+|+...++.. +| .|..||+.+...-+ -+.. ...-..++.|.|.=-...|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777888887766654 33 58999997643322 1111 12244677788743445566778999
Q ss_pred EEEEEcCCce-eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEee
Q 001490 844 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 922 (1068)
Q Consensus 844 v~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 922 (1068)
|++..+.-.. .+..+. ....+++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ..+|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9988765332 222323 4566899999999999999999999998876643211 122222111 24799999999
Q ss_pred CCCEEEE
Q 001490 923 DQTRFLL 929 (1068)
Q Consensus 923 dg~~la~ 929 (1068)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 442
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=3.2 Score=39.88 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=94.5
Q ss_pred CCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeE--EEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccccc
Q 001490 789 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 863 (1068)
Q Consensus 789 dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~ 863 (1068)
+|+++.+.+ ...|++||+.+++.+..-.-....+- .+.-. +..+.+-.-.+|.-.+||..+.+++..+. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 556666655 35699999999988766543322221 11111 23344455678889999999988877665 334
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCC
Q 001490 864 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 942 (1068)
Q Consensus 864 ~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~ 942 (1068)
.=+.++ .|++-|..++...+++.-|.++-..... +.-+..+... ..+..+.| -||...|- -....|...+.++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~-v~VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDT-VQVTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHHhhhcce-EEEEECCeec--ccccceee-eccEEEEeeeeecceEEEcCCC
Confidence 344444 3666677766666777766655322221 1111111111 01122222 13443332 2444555556666
Q ss_pred ceeeeee-----------ccCCCcCEEEEEEecCC-CEEEEE
Q 001490 943 LTCLKQW-----------FPISSVPISQATFSCDC-RMVFTS 972 (1068)
Q Consensus 943 ~~~~~~~-----------~~~h~~~v~~l~fs~dg-~~l~t~ 972 (1068)
|+.+.-+ ...|..-...+++.|++ ++++||
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6554321 12234566788999987 566655
No 443
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=11 Score=38.63 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=92.0
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecC--CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc---e
Q 001490 780 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---E 853 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~ 853 (1068)
-+..+.++. +++..+. +..++|.|+.+......+.. ..+...++.. .|++..++..|.-+.+.|+.+. +
T Consensus 88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCce
Confidence 344555644 4555665 46699999987655443322 2244455666 4678887886666788888764 3
Q ss_pred eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCC
Q 001490 854 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 933 (1068)
Q Consensus 854 ~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~ 933 (1068)
+..++......-..++.| |++-..+..|+-+.|-|+....... +.++....+.+.++..|++-.+++...+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPv------li~~~n~g~g~~sv~vsdnr~y~vvy~e- 233 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPV------LIGSYNTGPGTYSVSVSDNRAYLVVYDE- 233 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCe------EEEEEecCCceEEEEecCCeeEEEEccc-
Confidence 445555445545667776 6677777889999999999854332 2222222235677777777766665433
Q ss_pred eEEEEECCCce
Q 001490 934 HLAIYEAEELT 944 (1068)
Q Consensus 934 ~i~vwd~~~~~ 944 (1068)
.+.+-|..+..
T Consensus 234 gvlivd~s~~s 244 (370)
T COG5276 234 GVLIVDVSGPS 244 (370)
T ss_pred ceEEEecCCCC
Confidence 34455554433
No 444
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.33 E-value=1.9 Score=47.92 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=83.0
Q ss_pred CCeEEEEEeCCCCCEEEEEE-----------CCC-eEEEEEcCC--ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC
Q 001490 820 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SE--VISKLEGHSKRVTGLVFSDALNILVSSGGD 883 (1068)
Q Consensus 820 ~~i~~l~~s~~d~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s~d 883 (1068)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3557889998 788777642 223 777776543 32 223443334456889999998 444 4444
Q ss_pred CcEEEEECCCCc-e--eeeeeeecCCCc-ccCCCCceEEEEeeCCCEEEE-EeC-------------------CeEEEEE
Q 001490 884 AQIFVWDVDGWG-I--QTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE 939 (1068)
Q Consensus 884 g~i~iwd~~~~~-~--~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~-~~d-------------------~~i~vwd 939 (1068)
...++.|.+... . ....++..+... .........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433344544321 1 111222322221 001124678999999988776 411 3466666
Q ss_pred CCCceeeeeeccCCCcCEEEEEEecCCCEEEEEE
Q 001490 940 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 973 (1068)
Q Consensus 940 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 973 (1068)
..+++. ..+..+ -.....++|+++|+++++-.
T Consensus 171 pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecC-cCCCccceECCCCCEEEEcc
Confidence 655443 222333 34456899999998877644
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=2.7 Score=45.25 Aligned_cols=146 Identities=8% Similarity=0.040 Sum_probs=88.2
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc--e-eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001490 821 TATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 897 (1068)
Q Consensus 821 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~ 897 (1068)
..+.+-|.. .++.|. +...|.+.=|-.... . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+..
T Consensus 24 esngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 24 ESNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 345566654 333433 333444555544321 1 22222235679999999999999999999999999998654322
Q ss_pred eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEE
Q 001490 898 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 973 (1068)
Q Consensus 898 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 973 (1068)
.........+. ..|....|+.. .-+|...+..+.+|-.............|...|.-..|.++.+.++-++
T Consensus 102 l~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 102 LEYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hHHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 11111111111 24778888776 6677777777778776544333334556777888888888887654443
No 446
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.08 E-value=29 Score=42.87 Aligned_cols=172 Identities=14% Similarity=0.147 Sum_probs=101.1
Q ss_pred CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEEccCc---------------eeEEEecC---CCCCeEEEEEeCCC
Q 001490 777 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 831 (1068)
Q Consensus 777 ~~~~v~~l~~s---~----dg~~l~~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 831 (1068)
...+|..|+|+ . ..++|++-....+.|+...-. .++..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46688888887 2 235788777888888873211 12223321 22355678888877
Q ss_pred CCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccC
Q 001490 832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 911 (1068)
Q Consensus 832 ~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 911 (1068)
.+.+|+.+..|...||++..+... +. .... +.....|.| +.|...-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCccc-----------------
Confidence 778888888888888888221110 00 1111 111122222 2222210
Q ss_pred CCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeee-eeccCCCcCEEEEEEecC--CCEEEEEECCCcEEEEEcCC
Q 001490 912 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCD--CRMVFTSFVDGTLSIHEASN 985 (1068)
Q Consensus 912 ~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~l~fs~d--g~~l~t~~~dg~v~vwd~~~ 985 (1068)
..-..+.|.++-..|++.....+.++|+++..... .........|..+.-+++ +..++- ....|...++..
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 12446888889888999888999999998776643 222334577888888887 322222 235677777776
No 447
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=6 Score=48.86 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=100.1
Q ss_pred CCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEE--------cCCCCEEEEEeCCCcEEEEECCCCceeeee-e
Q 001490 831 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCR-S 901 (1068)
Q Consensus 831 d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~--------spdg~~l~s~s~dg~i~iwd~~~~~~~~~~-~ 901 (1068)
=++.-+ +-|+.+.+|+..++.....+.+-+..|..|.. -|.=++++..+.--.|.++-+.-.+..... .
T Consensus 90 I~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 90 IGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred hcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence 344444 34788999999998777888877777777654 333355555555666777766433322111 0
Q ss_pred eecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEE--EECCCc---e-e----------------eeeeccCCCcCEEE
Q 001490 902 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-C----------------LKQWFPISSVPISQ 959 (1068)
Q Consensus 902 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~v--wd~~~~---~-~----------------~~~~~~~h~~~v~~ 959 (1068)
+...-.....+..|.++....+|+.+.+|.||.++= |...+| + + +..+...+..+|..
T Consensus 168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 168 FNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred cccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 111100001123588999899999999999985542 333322 1 1 01112245779999
Q ss_pred EEEecCCCEEEEEECCCcEEEEEcCC-CcEEEE
Q 001490 960 ATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCR 991 (1068)
Q Consensus 960 l~fs~dg~~l~t~~~dg~v~vwd~~~-~~~~~~ 991 (1068)
++....-..|.+-+..|+|++|++.. |....+
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r 280 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPR 280 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccCCCcccee
Confidence 99988888999999999999999997 544333
No 448
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.98 E-value=1.1 Score=47.95 Aligned_cols=159 Identities=9% Similarity=0.077 Sum_probs=98.1
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeE-EEec-CCCC----CeE-EEEEeCCCCCEEEEEECCCeEEEE-E
Q 001490 777 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 848 (1068)
Q Consensus 777 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d 848 (1068)
....+..+-..|||+.+.+-+...+.++++.+.... +.+. ...+ .|+ ++..-. +|.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456778889999999999988889999988754322 1221 1111 122 222233 67778889999988777 4
Q ss_pred cCCc-e----eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeC
Q 001490 849 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 923 (1068)
Q Consensus 849 ~~~~-~----~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 923 (1068)
...+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+. ...+... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehhhhh------cCcceeeeCcc
Confidence 4432 2 1222222223344333333446677778888888776544221 1111111 13667999999
Q ss_pred CCEEEEEeCCeEEEEECCCcee
Q 001490 924 QTRFLLVHETHLAIYEAEELTC 945 (1068)
Q Consensus 924 g~~la~~~d~~i~vwd~~~~~~ 945 (1068)
+.+|++-..+.++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999999876543
No 449
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.96 E-value=13 Score=38.53 Aligned_cols=240 Identities=12% Similarity=0.113 Sum_probs=121.8
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEECCCC-------ceeeeccc-----cccceeeeEEcCCccccccccccCeeeecC
Q 001490 601 NPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVNE 668 (1068)
Q Consensus 601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1068)
-+.++++|.+.+-++....+...+||.... ..+..+.. .....+.+.|+..... .+..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F----------~vt~ 94 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF----------VVSG 94 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce----------EEcC
Confidence 478999999988888888899999998611 12222221 1123334444322211 1111
Q ss_pred CCCCCcccceeecccccceeecccccCCcccc-eeecCCccccccEEEEEEec--CCceEEEeec-CccEEEEeccCCcc
Q 001490 669 DPKEDVKPEISVEAENKSEVEKPLFARPSECQ-SLLLPSKVKANKISRLTYNN--GGQAIFALAS-NGVHLMWRWPRNDL 744 (1068)
Q Consensus 669 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~--~g~~l~~~~~-dg~i~iw~~~~~~~ 744 (1068)
........++.+++||+|.-|........... .+.+.......--+.+++.. .+.+|.++.- +++|.++|-.-...
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 11112234678899999999995433331001 11111111122233444442 3455554433 57777776443322
Q ss_pred CCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE-------------E-eCCeEEEEEccCce
Q 001490 745 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS-------------A-SGGVISLYIVMTFK 810 (1068)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-------------~-~dg~i~iwd~~~~~ 810 (1068)
...+... |+. ++ -......+..- .+++.++ + .-|.|-+||+. |+
T Consensus 175 ~~~g~F~--------DP~---------iP---agyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~ 232 (336)
T TIGR03118 175 PLPGSFI--------DPA---------LP---AGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQ 232 (336)
T ss_pred cCCCCcc--------CCC---------CC---CCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-Cc
Confidence 1111111 110 00 00001111110 1122111 1 13679999986 77
Q ss_pred eEEEecC--CCCCeEEEEEeC-----CCCCEEEEEECCCeEEEEEcCCceeeeeeccccc------CeEEEEEcC
Q 001490 811 TILTIMP--PSPTATSLAFNP-----HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------RVTGLVFSD 872 (1068)
Q Consensus 811 ~~~~~~~--~~~~i~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~------~V~~l~~sp 872 (1068)
.++++.. .-..-..|+..| -.+.+|+---.||+|-.||..+|+.+..+....+ ..+.|+|-.
T Consensus 233 l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 233 LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7777642 223445566544 2577888777899999999999998877765333 245566643
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.81 E-value=0.17 Score=58.38 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=81.8
Q ss_pred cccCCCCceEEEEc----CCCCeEEEEEcCcCcEEEEecC--CCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490 306 LIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 379 (1068)
Q Consensus 306 l~~h~~~V~~v~~s----pdg~~lla~gs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~ 379 (1068)
++|-+++|-.++|- |.+. .++ |...|||+. .|+......+.+ ...-...+.-|.
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~-~~v-----g~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR-RLV-----GELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVS 187 (1283)
T ss_pred HhcCCCCcccccccccCChHHH-HHh-----hhhheeehHhhccccccceEEee--------------cCcCCCCcceee
Confidence 44666778888883 4443 112 788999985 455443322221 122233444455
Q ss_pred EC---CCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEE-----------cCCCCcEEEEEEeCCCcEEE
Q 001490 380 WS---PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-----------SAPCKQISVITCGDDKTIKV 445 (1068)
Q Consensus 380 ~s---pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~-----------s~d~~~~~l~s~~~d~~i~i 445 (1068)
|. ++..++..+..+++|++..+++... . .+.+|...+..++| ||||+ .++.+..||.++.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGF 261 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccce
Confidence 54 4677888888888888877766432 1 24468777766654 88999 8999999998888
Q ss_pred EECC-----CCceeeEeccCCC
Q 001490 446 WDAV-----TGSRTYSFEGHGA 462 (1068)
Q Consensus 446 wd~~-----~~~~~~~~~~h~~ 462 (1068)
|-+. .-++++..+.|.+
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCC
Confidence 7653 2345566666763
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=92.09 E-value=7.9 Score=44.77 Aligned_cols=182 Identities=10% Similarity=-0.019 Sum_probs=94.6
Q ss_pred CCCEEEEEECCC-----eEEEEEcCCceee--eeecccccCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeeeee
Q 001490 831 DNNVIAIGMDDS-----TILIYNARSSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQTCRS 901 (1068)
Q Consensus 831 d~~~lasg~~dg-----~v~iwd~~~~~~~--~~~~~h~~~V~~l~~spdg~~l~s~s~d--g~i~iwd~~~~~~~~~~~ 901 (1068)
++.++++|+.++ .+..||..+++-. ..+.........+ .-+|+..+.||.+ ..+..||..+++......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 567777787653 5777888775432 2222111112222 2367788888764 357888876654322222
Q ss_pred eecCCCcccCCCCceEEEEeeCCCEEEEE-eC---CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc
Q 001490 902 LQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 977 (1068)
Q Consensus 902 ~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~ 977 (1068)
+... .....+..-+|+..++| .+ ..+..||..+.+....-...... -...+..-+|+..+.| |.
T Consensus 349 l~~~--------r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-~~~~~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 349 LLKP--------RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-YKSCALVFGRRLFLVG---RN 416 (480)
T ss_pred CCCC--------CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-ccceEEEECCEEEEEC---Cc
Confidence 2111 11223334567766664 22 35788998876654321111111 1122234567666666 45
Q ss_pred EEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC-----CcEEEEeCC
Q 001490 978 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPN 1037 (1068)
Q Consensus 978 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~d-----g~i~~w~~~ 1037 (1068)
+.+||..+++.... . ..+.. ... .+++.. ++.++++||.+ ..+..||..
T Consensus 417 ~e~ydp~~~~W~~~-~---~m~~~----r~~-~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 417 AEFYCESSNTWTLI-D---DPIYP----RDN-PELIIV--DNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred eEEecCCCCcEeEc-C---CCCCC----ccc-cEEEEE--CCEEEEECCcCCCcccceEEEEECC
Confidence 78899988766522 1 11211 011 122222 46888888865 356777764
No 452
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.95 E-value=25 Score=39.58 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=41.0
Q ss_pred ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-CcEEEEeeeecCCccEEEEEEcCC
Q 001490 416 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDG 485 (1068)
Q Consensus 416 h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg 485 (1068)
...+|..+.+...|. +..|+.|| +..||..+++.++.-.... .+|..+.... .| .|..|+.+|
T Consensus 163 ~d~~V~aLv~D~~g~---lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~--qg-~LWVGTdqG 226 (671)
T COG3292 163 KDTPVVALVFDANGR---LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADV--QG-RLWVGTDQG 226 (671)
T ss_pred cCccceeeeeeccCc---EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHh--cC-cEEEEeccc
Confidence 456788999998886 66678777 7778888888776543333 4555554332 22 466666665
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.91 E-value=26 Score=39.56 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=41.2
Q ss_pred cccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCC
Q 001490 306 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 384 (1068)
Q Consensus 306 l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg 384 (1068)
+...-+..+.|+|.|||+ ++++--..|.|++++-.++.......+ ..............|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 344445789999999996 666654459999998665542211111 110011136778999999884
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.78 E-value=5.4 Score=46.93 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=91.9
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEE
Q 001490 790 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 869 (1068)
Q Consensus 790 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 869 (1068)
+.+++++..+.|.||+........ ...+...+...| .. +...|+.+..|. ..|. |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 788999999999999986432211 001111222222 11 122333333332 0121 22222
Q ss_pred E--cCCCCEEEEEeCCCcEEEEECCCCc-----------eeeeeeeecCCCcccCCCCceEEEEe--eCCCEEEEEeCC-
Q 001490 870 F--SDALNILVSSGGDAQIFVWDVDGWG-----------IQTCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET- 933 (1068)
Q Consensus 870 ~--spdg~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~la~~~d~- 933 (1068)
. --+...|+.+.+||.|.+|.+++-- ....+....+.-+........++++. ...++||++.++
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 2 2244667777888888888653200 00000000011111122457889998 888889987654
Q ss_pred eEEEEECCC--ceeeeeeccCCCcCEEEEEEecCC---C---EEEEEECCCcEEEEEcC
Q 001490 934 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 934 ~i~vwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~~~dg~v~vwd~~ 984 (1068)
.|.||-... .+....--..|...|.+++|-++. . +|++++-.|.+.+|++.
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 455554432 222211112356789999998754 2 78889999999998883
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.72 E-value=16 Score=42.43 Aligned_cols=165 Identities=12% Similarity=0.128 Sum_probs=78.9
Q ss_pred ceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccce-EEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001490 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 452 (1068)
Q Consensus 374 ~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 452 (1068)
.+..+.|+.+..+|+ ...+|+++||++-... +... .........|..+.|...|= .+.+ .+|.+.+-+-....
T Consensus 85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt--~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLT--VSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEe--cCCcEEEEcCCCcc
Confidence 788999998776655 5699999999987532 2110 01122333466666666553 3333 34444443312111
Q ss_pred eeeEecc-CCCcEEEEeeeecCC---ccEEEEEEcCCcEEEEeCCCCC-ceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490 453 RTYSFEG-HGAPVYSLCPHAKEN---IHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 453 ~~~~~~~-h~~~v~~i~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 527 (1068)
.+++++. ........||.-..+ ...++-....--..++-..... ....+......+..+++||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~-- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE-- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec--
Confidence 2222221 111111122221111 1111111100000111111111 11222223457788999999999988765
Q ss_pred CCceeEEEEeCCCCeeeeEEe
Q 001490 528 EGESFLVEWNESEGAIKRTYQ 548 (1068)
Q Consensus 528 ~~~~~i~~wd~~~~~~~~~~~ 548 (1068)
.|.|.+-+.+..+....+.
T Consensus 237 --~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 --TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred --CCcEEEEecchhhhhhccC
Confidence 4457777776666655555
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.64 E-value=0.49 Score=32.59 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCC--eEEEEEcCcCcEEEEecCCC
Q 001490 311 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG 343 (1068)
Q Consensus 311 ~~V~~v~~spdg~--~lla~gs~dg~v~iwd~~~~ 343 (1068)
+.|.+++|||+.. -||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999997554 48888888899999999863
No 457
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.62 E-value=26 Score=39.02 Aligned_cols=150 Identities=9% Similarity=-0.007 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCce
Q 001490 865 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 944 (1068)
Q Consensus 865 V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~ 944 (1068)
...+..++||.+++.+..-..++-||-.... ...+..... ..+..+.|.++|.+++++..|.+.. ....+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4456677888877765544333334433210 011222211 2578999999999999888777544 334443
Q ss_pred -----eeeeeccC-CCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCC
Q 001490 945 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1018 (1068)
Q Consensus 945 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1018 (1068)
........ ....+..+.|.+|+..+++ +..|.+... .+.|+.-.........+. .+| .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence 12211111 1345889999988876664 577876655 455544333221111111 233 677765
Q ss_pred CCEEEEEeCCCcEEEE
Q 001490 1019 PTQFAVGLTNGEVYVI 1034 (1068)
Q Consensus 1019 ~~~l~~~~~dg~i~~w 1034 (1068)
.+...+.+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3567777778887655
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.45 E-value=1.2 Score=47.83 Aligned_cols=122 Identities=11% Similarity=0.153 Sum_probs=80.9
Q ss_pred CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490 310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 389 (1068)
Q Consensus 310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las 389 (1068)
+++|.++.||||.+ ++|+--.+++|.+.+....+.....+.+ ....+..|....|+.+ .-+|.
T Consensus 66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence 45999999999998 8899999999999998543332211100 1223456889999866 66777
Q ss_pred EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490 390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 451 (1068)
Q Consensus 390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 451 (1068)
....| +.+|-+...+ +..+..+.|...|..-.|.++.+-.+|+++-..+++.=+-+.++
T Consensus 129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 76666 7788765533 22224557888999999999988544444434444444444443
No 459
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.23 E-value=21 Score=38.81 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=57.1
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCcee-eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe------CCeEEEEEC
Q 001490 873 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 940 (1068)
Q Consensus 873 dg~~l~s~s~dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~------d~~i~vwd~ 940 (1068)
++++++.|+.++ .+..+|+.+.+.. ....+...... .....+..-++++.+.+. ...+..||+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 566777777643 4666777664421 11111111110 111122234566666543 236888998
Q ss_pred CCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc----EEEEEcCCCcEE
Q 001490 941 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEVQ 989 (1068)
Q Consensus 941 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~----v~vwd~~~~~~~ 989 (1068)
.+.+....-......+....+...+++..+.|+.++. +.+||..+.+..
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 8765433211111122233344567788888877643 567888877654
No 460
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.09 E-value=0.19 Score=58.07 Aligned_cols=228 Identities=16% Similarity=0.153 Sum_probs=118.6
Q ss_pred CeEEEEEcc--CceeEEE-----ecCCCCCeEEEEEeCC--CCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEE
Q 001490 799 GVISLYIVM--TFKTILT-----IMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 869 (1068)
Q Consensus 799 g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 869 (1068)
|.+.||++. .|+.... .......+.-+.|.|. +..++..+..+++|++....+... ..+.+|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 667888875 3433222 2222233344444331 557888888889998877665332 45566776665544
Q ss_pred -----------EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC-------CE--EEE
Q 001490 870 -----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-------TR--FLL 929 (1068)
Q Consensus 870 -----------~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-------~~--la~ 929 (1068)
.||||+.+|.++.||.++.|.+.-......+++...+.|.. .+-.|.-|.... .+ +++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 58999999999999999999876433333445544444432 122222243332 22 233
Q ss_pred EeC--CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCC------------EEEEEECCCcEEEEEcCCCcEEEEeccc
Q 001490 930 VHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR------------MVFTSFVDGTLSIHEASNLEVQCRILST 995 (1068)
Q Consensus 930 ~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~------------~l~t~~~dg~v~vwd~~~~~~~~~~~~~ 995 (1068)
+.| ..+++|....-+|+.... ...|..+. -+||+ .+++-+-|++|.+|.-..-...-...++
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~ 385 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPH 385 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhh
Confidence 333 458888877666652211 12333333 22332 1334456777877754432221111111
Q ss_pred cccCCCCccCcccceEEEECCC--CCCEEEEEeC-CCcEEEEeCCCCC
Q 001490 996 AYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLT-NGEVYVIEPNEPG 1040 (1068)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~~~p~--~~~~l~~~~~-dg~i~~w~~~~~~ 1040 (1068)
. +.++.+....-+|. +...+++|+. +..+.+|..--++
T Consensus 386 ~-------~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~ 426 (1283)
T KOG1916|consen 386 D-------GHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEE 426 (1283)
T ss_pred h-------cceeccccccccCCCccccccccCCcchhhhhhhhhcccc
Confidence 1 22233323333431 2234555554 4467788775444
No 461
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.95 E-value=13 Score=40.37 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=84.8
Q ss_pred CCCeEEEEEeCCCCCEEEEEECCCe------EEEEEcCC--c--ee-----eeeeccccc--------CeEEEEEcCCCC
Q 001490 819 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EV-----ISKLEGHSK--------RVTGLVFSDALN 875 (1068)
Q Consensus 819 ~~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~-----~~~~~~h~~--------~V~~l~~spdg~ 875 (1068)
-+.+..+++.++++ .+++.+++|. ++.+++.. + .. ...+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35678899987345 4555666776 66665543 1 11 111111111 234788888898
Q ss_pred EEEEEeCC------CcEEEEECCCCceeeeeeeecCC-------CcccCCCCceEEEEeeCCCEEEEE------eCC---
Q 001490 876 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--- 933 (1068)
Q Consensus 876 ~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~spdg~~la~~------~d~--- 933 (1068)
++++.-.+ ..|+.++.. +.......+...- ..........+++++|||+.|.+. .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887667 778778766 4432221111110 112223578999999999955442 222
Q ss_pred --------eEEEEECCC-ceeeeee---ccC-----CCcCEEEEEEecCCCEEEE
Q 001490 934 --------HLAIYEAEE-LTCLKQW---FPI-----SSVPISQATFSCDCRMVFT 971 (1068)
Q Consensus 934 --------~i~vwd~~~-~~~~~~~---~~~-----h~~~v~~l~fs~dg~~l~t 971 (1068)
.+..||..+ +....++ ... ....|+.+.+.+|+++|+-
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234455554 3222221 111 3578899999999997763
No 462
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.83 E-value=2.7 Score=50.66 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=89.3
Q ss_pred cEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee-----eEecc----CCCc--EEEEeeeecCCccEEEEEEcCCcE
Q 001490 419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEG----HGAP--VYSLCPHAKENIHFIFSISVDGKI 487 (1068)
Q Consensus 419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~----h~~~--v~~i~~~~~~~~~~l~s~s~dg~i 487 (1068)
+|..+...+|+....++..+.+-.|..||+++-..- .-|.. .... ..++.|.|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566777778877545555566567899998743211 11111 1222 23344544322 245666778888
Q ss_pred EEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc-cCCeEEEEEecCC
Q 001490 488 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK 566 (1068)
Q Consensus 488 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 566 (1068)
++..+........-.......++++|+|.|+.+++|-. .+++.-|.. +.+....+.+.... ...|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence 88765543333332233446899999999999999865 456776664 34444455444322 3779999998877
Q ss_pred CEEEE
Q 001490 567 DQILA 571 (1068)
Q Consensus 567 ~~l~~ 571 (1068)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77665
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.69 E-value=0.82 Score=31.13 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=23.2
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEE
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 338 (1068)
Q Consensus 307 ~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iw 338 (1068)
......-...+|||||++++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34445678899999999888888777 666665
No 464
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.41 E-value=27 Score=37.06 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=90.0
Q ss_pred cEEEEECCCCceeeEecc------CCCcEEEEeeeecCC----ccEEEEEEcCCcEEEEeCCCCCceEEecCCC------
Q 001490 442 TIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 505 (1068)
Q Consensus 442 ~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------ 505 (1068)
.|.+||+.+++.++++.- ....+..+.+...+. +...++-+..+-|.++|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 578899999998877643 245667777765332 2233344445679999998876544332211
Q ss_pred -------------CcEEEEEEcc---CCCEEEEEeeCCCCceeEEEEeCCCC-----e---------eeeEEeccccccC
Q 001490 506 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEG-----A---------IKRTYQGLQLQHN 555 (1068)
Q Consensus 506 -------------~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~~wd~~~~-----~---------~~~~~~~~~~~~~ 555 (1068)
..+..++.+| +++.|....-.+ -.+|-+.+. . .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1255566655 666666554322 122222211 0 11111 211 13
Q ss_pred CeEEEEEecCCCEEEEEECCCeEEEEEcCCC---eEEEEE-eCCCCCCCCceEEEec--CCCEEEEE
Q 001490 556 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTI-DAGGGLPENPRICFNK--NGTLLAVI 616 (1068)
Q Consensus 556 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~-~~~~~~~~v~~v~~s~--~~~~l~~~ 616 (1068)
....++++++|..+++--+.+.|..|+..+. +....+ ........+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 5667889999988888889999999998861 122222 2222234456777777 66554443
No 465
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.93 E-value=36 Score=37.85 Aligned_cols=202 Identities=17% Similarity=0.146 Sum_probs=105.9
Q ss_pred CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001490 383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 462 (1068)
Q Consensus 383 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 462 (1068)
||+.+ ++..+|.|.-.|.+++..+-..... .....+..-.+..+|+ ++.++.++.++.+|..+|+.+........
T Consensus 68 dg~v~-~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 68 DGTVY-VGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CCeEE-EecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 44433 3456777777777776532111011 1112223333333776 77788889999999889999887765551
Q ss_pred -cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC---CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490 463 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 538 (1068)
Q Consensus 463 -~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 538 (1068)
.+..-.+. ....+..++.++.+...+..++.......... ..+..-....++...+ +..+ . ++.+.-.|.
T Consensus 143 ~~~~~~~v~---~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~-~~~~-~-~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVV---GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYV-GSDG-Y-DGILYALNA 216 (370)
T ss_pred eEEecCcEE---cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEE-ecCC-C-cceEEEEEc
Confidence 11111111 12244444477888888887777766544432 1111111122333333 2221 1 335777788
Q ss_pred CCCeeeeEEecccccc-CCeEEE-EEec----CCCEEEEEECCCeEEEEEcCCCeEEEEEeCC
Q 001490 539 SEGAIKRTYQGLQLQH-NSVSVV-HFDT----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 595 (1068)
Q Consensus 539 ~~~~~~~~~~~~~~~~-~~v~~~-~~~~----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 595 (1068)
.+|...-......... ..+... .+.. .+..++.++.++.+...|..+++.+-.....
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7887765543222000 001000 0100 1223466778888999999999998887754
No 466
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.74 E-value=47 Score=38.85 Aligned_cols=80 Identities=10% Similarity=0.168 Sum_probs=47.5
Q ss_pred CCEEEEEeCCeEEEEEccCceeEEEecCCC-CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec-----cccc
Q 001490 790 DAYLFSASGGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSK 863 (1068)
Q Consensus 790 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~-----~h~~ 863 (1068)
+..++-.....|++.+...++......... ..|.+.+.. +..++.+..++.+..+.+.......... ....
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 566666667779999988877776654433 355555554 3566777778999999888765432221 1457
Q ss_pred CeEEEEEcC
Q 001490 864 RVTGLVFSD 872 (1068)
Q Consensus 864 ~V~~l~~sp 872 (1068)
.|.|+...|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788887766
No 467
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.61 E-value=39 Score=37.71 Aligned_cols=40 Identities=8% Similarity=-0.026 Sum_probs=19.8
Q ss_pred EEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490 578 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 619 (1068)
Q Consensus 578 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 619 (1068)
+.+||.++.+....-..+. ......+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence 4578887765432222111 111223444456777777653
No 468
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.53 E-value=21 Score=34.59 Aligned_cols=172 Identities=15% Similarity=0.099 Sum_probs=94.1
Q ss_pred EEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEE
Q 001490 433 SVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 510 (1068)
Q Consensus 433 ~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 510 (1068)
++.+.+.-| .|++||+.+|+.+.+-+-....+..=-....+| .+-.-.-.+|.-..+|.++.++.-.+...+.. .
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-W- 134 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-W- 134 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCcc-e-
Confidence 566655433 699999999998865543211121111111111 23334456778888888887776655444322 2
Q ss_pred EEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE----eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001490 511 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY----QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 586 (1068)
Q Consensus 511 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 586 (1068)
....|++.|+.+. |..+++.-|.++.....+. .+.. ...++.+.|- +|...+-.-.+..|...+.++|
T Consensus 135 -gLt~d~~~Limsd----GsatL~frdP~tfa~~~~v~VT~~g~p--v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 135 -GLTSDDKNLIMSD----GSATLQFRDPKTFAELDTVQVTDDGVP--VSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred -eeecCCcceEeeC----CceEEEecCHHHhhhcceEEEEECCee--cccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 2335666666543 3557888787765443333 2222 2334444443 4444443445566777788888
Q ss_pred eEEEEEeCCC----------CCCCCceEEEecCCCEEEE
Q 001490 587 QLLTTIDAGG----------GLPENPRICFNKNGTLLAV 615 (1068)
Q Consensus 587 ~~~~~~~~~~----------~~~~v~~v~~s~~~~~l~~ 615 (1068)
+.+..+...+ +..-.+.+++.|++..+..
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 8776665322 2223567888887744443
No 469
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.46 E-value=35 Score=37.06 Aligned_cols=70 Identities=7% Similarity=-0.103 Sum_probs=35.4
Q ss_pred CccEEEEEEcC-----CcEEEEeCCCCCceEEecCC-CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001490 474 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 543 (1068)
Q Consensus 474 ~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 543 (1068)
++.+.+.|+.. ..+..||+.+.+=...-... .......+...+++..+.++.++.....+..||+.+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 44566666542 35777777654422211111 112222333456677777665432223467889887654
No 470
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.36 E-value=1.3 Score=30.50 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.5
Q ss_pred cceEEEEECCCC---CEEEEEeCCcEEEEEEccCC
Q 001490 373 VSVNRVVWSPDG---SLLGVAYSKHIVQLYAYHGG 404 (1068)
Q Consensus 373 ~~V~~~~~spdg---~~las~~~d~~i~vwd~~~~ 404 (1068)
+.|.++.|||+. .+||.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368999999854 58888888899999999863
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.35 E-value=5 Score=49.55 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=99.6
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490 295 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 374 (1068)
Q Consensus 295 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 374 (1068)
+..+|..++..+. |...-..+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-+..
T Consensus 64 v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sht 121 (1311)
T KOG1900|consen 64 VVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSHT 121 (1311)
T ss_pred cccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhhh
Confidence 3455666665555 3333344444444332 4446679999999998665543 3334444
Q ss_pred eEEEE--------ECCCCCEEEEEeCCcEEEEEEccCCCcccce------EEEccccccEEEEEEcCCCCcEEEEEEeCC
Q 001490 375 VNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGDD 440 (1068)
Q Consensus 375 V~~~~--------~spdg~~las~~~d~~i~vwd~~~~~~~~~~------~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 440 (1068)
|..|. |-|.=++|.+...--.|.++-+.-.+..... ..+....-.|.|+....+|+ +++ +|.|
T Consensus 122 Il~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~d 198 (1311)
T KOG1900|consen 122 ILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRD 198 (1311)
T ss_pred heeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecC
Confidence 54444 3444556655555556777655433221111 12223355789999888998 455 5556
Q ss_pred CcEEE--EECCCC---c-e----------------eeEec-cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCC
Q 001490 441 KTIKV--WDAVTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 494 (1068)
Q Consensus 441 ~~i~i--wd~~~~---~-~----------------~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~ 494 (1068)
|.|+- |....| + + +..+. .+..+|..+.+.. ....+.+-+..|+|.+|++..
T Consensus 199 g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 199 GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 64432 222221 1 1 11223 4677899998854 445888999999999999876
No 472
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.23 E-value=16 Score=32.82 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=67.7
Q ss_pred EEEEcCCCCeEEEEEcCcCcEEEEecCCCcceee---eeeeeeeccccccceeeeeecCCCcceEEEEECC-----CCCE
Q 001490 315 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSL 386 (1068)
Q Consensus 315 ~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-----dg~~ 386 (1068)
.-.|..... -|++++..|.|.|.+......... ..++ +-.-...|++++-.+ +...
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRDC 66 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcCE
Confidence 345555555 457777779999999865432211 1111 111335677775433 3456
Q ss_pred EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC----CCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCGDDKTIKVWDAVTGSRTYS 456 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 456 (1068)
|+.|+ ..++..||+.....+. .+.-.+.|.++.+-. +.. +++.|+ ...|.-+|.+..+...+
T Consensus 67 LliGt-~t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~--l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 67 LLIGT-QTSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP--LVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EEEec-cceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc--EEEECc-eEEEEEeCCCCcEEEEE
Confidence 77775 4569999999876553 223446677777632 223 455444 77888888544443333
No 473
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=7.5 Score=48.76 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=46.1
Q ss_pred CceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE
Q 001490 914 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 988 (1068)
Q Consensus 914 ~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~ 988 (1068)
.+.+..+...+..+.....+.+-+|+.........+...+... +.++..++++..||.+.+||...+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 4455555555555555556666666665544444433222211 88999999999999999999999866
No 474
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=0.24 Score=52.16 Aligned_cols=95 Identities=17% Similarity=0.287 Sum_probs=68.9
Q ss_pred CccccccCccc----------cHHHHHHHhhCCChHHHHHhhccCC-CCCCcccceeEEEeeeehhhhhhcCCcchH--H
Q 001490 2 HRLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFEIRKQNFFEALDGHDIA--K 68 (1068)
Q Consensus 2 ~~le~esg~~~----------~~~~~~~~il~G~w~~~~~~l~~~~-~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~--~ 68 (1068)
++|-+|+|... |+.+.-+++.+|+-.-|++.+..-. .+.+.. . ++.|.+..+.|++++..|... +
T Consensus 137 ~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~-s-~LE~~Lh~l~fl~l~~~g~~~~~e 214 (394)
T KOG2817|consen 137 ECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS-S-SLEFKLHSLHFLSLIRGGKSDQRE 214 (394)
T ss_pred HHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc-c-cHHHHHHHHHHHHHHhcCCcCcHH
Confidence 35667888664 3888899999999999999986532 112222 2 277999999999999988877 9
Q ss_pred HHHHHHhhccccCCCCHHHHHHH-Hhhhccc
Q 001490 69 ALNILKKDLKDFAPGNEELFKEL-AQLLTLD 98 (1068)
Q Consensus 69 A~~~L~~~l~p~~~~~~~~~~~l-~~ll~~~ 98 (1068)
|++..|+.++||......+.+.| +.|+-+.
T Consensus 215 Al~Yar~~~~~F~~~~~~eIQklm~sl~~l~ 245 (394)
T KOG2817|consen 215 ALRYARTHFAPFVADHLREIQKLMGSLLYLR 245 (394)
T ss_pred HHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence 99999999999966444444433 3333343
No 475
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.56 E-value=35 Score=37.12 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=88.9
Q ss_pred ccccEEEEEEecCCceEEEeecCcc------EEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCee
Q 001490 709 KANKISRLTYNNGGQAIFALASNGV------HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 782 (1068)
Q Consensus 709 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 782 (1068)
.-+.+..+.+.+++..+++.+.+|. +...++..... ..........+.+-+.. |..+. .......
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~-------~~~~D~E 88 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP-------KNGLDPE 88 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC-------cCCCChh
Confidence 3456788999976667888888877 55555443111 11111111111111211 11110 0122556
Q ss_pred EEEEecCCCEEEEEe-C------CeEEEEEccCceeEEEec---------------CCCCCeEEEEEeCCCCCEEEEEEC
Q 001490 783 CFALSKNDAYLFSAS-G------GVISLYIVMTFKTILTIM---------------PPSPTATSLAFNPHDNNVIAIGMD 840 (1068)
Q Consensus 783 ~l~~s~dg~~l~~~~-d------g~i~iwd~~~~~~~~~~~---------------~~~~~i~~l~~s~~d~~~lasg~~ 840 (1068)
+|++.++|.++++.. + ..|.-++.. |+.+..+. ..+...-+|+++| +|+.|.++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEEC
Confidence 788888888877765 4 457777766 65554431 1234678999999 8885555433
Q ss_pred -----CC--e-------EEE--EEcCC-cee----eeeecc-----cccCeEEEEEcCCCCEEEE
Q 001490 841 -----DS--T-------ILI--YNARS-SEV----ISKLEG-----HSKRVTGLVFSDALNILVS 879 (1068)
Q Consensus 841 -----dg--~-------v~i--wd~~~-~~~----~~~~~~-----h~~~V~~l~~spdg~~l~s 879 (1068)
|+ . +++ ||..+ ++. ...+.. ....|..+.+-+++++|+.
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 1 445 45444 222 233332 3467888999999987764
No 476
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.49 E-value=23 Score=39.16 Aligned_cols=153 Identities=8% Similarity=0.063 Sum_probs=92.2
Q ss_pred EEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecC------CccEEEEEEcCCcEEEEeCC
Q 001490 420 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYD 493 (1068)
Q Consensus 420 v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~------~~~~l~s~s~dg~i~vwd~~ 493 (1068)
+..+-.+.+...+++..|+....++-.|++.|+.+..+..|...+ +.+.|.. +.+.|+ |-.+..|.-.|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEeccc
Confidence 333444444555566777888889999999999999998887764 3333321 223444 4444445545555
Q ss_pred CCCceEEecCCCC-----cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCE
Q 001490 494 SLGARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 568 (1068)
Q Consensus 494 ~~~~~~~~~~~~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 568 (1068)
............. ...+..- ...-++++++..|+ |++||.-..+....+.+.. ..|..+..+.+|++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ 617 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKH 617 (776)
T ss_pred ccCCceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcE
Confidence 4443222211111 1222222 24457888876444 9999965555545555555 78999999999999
Q ss_pred EEEEECCCeEEEEEcC
Q 001490 569 ILAAGDDHVIKIWDMN 584 (1068)
Q Consensus 569 l~~~s~dg~i~iwd~~ 584 (1068)
+++.+. ..+.+-|+.
T Consensus 618 ilaTCk-~yllL~d~~ 632 (776)
T COG5167 618 ILATCK-NYLLLTDVP 632 (776)
T ss_pred EEEeec-ceEEEEecc
Confidence 998775 355555553
No 477
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.89 E-value=9 Score=42.26 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=64.4
Q ss_pred CcCEEEEEEecCCCEEEEEECCCcEEEEE---------cCCCc--EEEEeccccccCCCCccCcccceEEEECCCC--CC
Q 001490 954 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--PT 1020 (1068)
Q Consensus 954 ~~~v~~l~fs~dg~~l~t~~~dg~v~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~ 1020 (1068)
.-.|..+..++.|..++-.|.+|.+..+= ++.|+ ..|+..+... .-.+.+..+...-++|||+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCc
Confidence 44677888899999999999998654432 23342 3444331110 00112345566778999953 46
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCccCCCCc
Q 001490 1021 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus 1021 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
.|..-+.|..|++|+.++....|...+++.
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpgepg 211 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPGEPG 211 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCCCcC
Confidence 788899999999999998887787776644
No 478
>PLN02193 nitrile-specifier protein
Probab=87.62 E-value=60 Score=37.46 Aligned_cols=154 Identities=11% Similarity=0.013 Sum_probs=79.4
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCceeee--eecc-cccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcee
Q 001490 831 DNNVIAIGMDD-----STILIYNARSSEVIS--KLEG-HSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 897 (1068)
Q Consensus 831 d~~~lasg~~d-----g~v~iwd~~~~~~~~--~~~~-h~~~V~~l~~spdg~~l~s~s~dg-----~i~iwd~~~~~~~ 897 (1068)
++++++.|+.+ ..+..||+.+.+-.. .+.. ....-...+..-++++.+.|+.++ .+..||+.+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 66788888765 368889988754322 2110 000111111223567777777543 4677888775532
Q ss_pred eeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeC----CeEEEEECCCceeeeeeccC--CCcCEEEEEEecCCCEEE
Q 001490 898 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE----THLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVF 970 (1068)
Q Consensus 898 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d----~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~ 970 (1068)
. +........ .+....+..-++++.+. +.+ +.+.+||+.+.+.......+ ...+....+..-++++++
T Consensus 308 ~---~~~~~~~~~--~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv 382 (470)
T PLN02193 308 H---CSTPGDSFS--IRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI 382 (470)
T ss_pred e---CCCCCCCCC--CCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE
Confidence 2 221111111 01112222346776666 333 46899999887654321111 111112223344677888
Q ss_pred EEECC--------------CcEEEEEcCCCcEE
Q 001490 971 TSFVD--------------GTLSIHEASNLEVQ 989 (1068)
Q Consensus 971 t~~~d--------------g~v~vwd~~~~~~~ 989 (1068)
.|+.+ ..+.++|+.+.+..
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 88753 24788898888765
No 479
>PLN02193 nitrile-specifier protein
Probab=87.52 E-value=61 Score=37.42 Aligned_cols=157 Identities=8% Similarity=-0.068 Sum_probs=71.9
Q ss_pred EEEEEeCC-----CcEEEEECCCCceeeEeccC--CCcEEEEeeeecCCccEEEEEEcCC-----cEEEEeCCCCCceEE
Q 001490 433 SVITCGDD-----KTIKVWDAVTGSRTYSFEGH--GAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVD 500 (1068)
Q Consensus 433 ~l~s~~~d-----~~i~iwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~ 500 (1068)
+++.|+.+ ..+.++|+.+.+-...-... ..+....+.... ++++.+.|+.++ .+..||+.+.+-...
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~ 309 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHC 309 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeC
Confidence 55556544 35888898775432211100 111111111111 445666666543 356677655432211
Q ss_pred ec---CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC--
Q 001490 501 YD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-- 575 (1068)
Q Consensus 501 ~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-- 575 (1068)
.. .........+..-+++..+.++.++.....+.+||+.+.+....-.............+..-+++.++.|+.+
T Consensus 310 ~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~ 389 (470)
T PLN02193 310 STPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAM 389 (470)
T ss_pred CCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCC
Confidence 10 0000111111223667766666443323568999998876543321100000111111222345566666643
Q ss_pred ------------CeEEEEEcCCCeEEE
Q 001490 576 ------------HVIKIWDMNKVQLLT 590 (1068)
Q Consensus 576 ------------g~i~iwd~~~~~~~~ 590 (1068)
+.+.++|+.+.+...
T Consensus 390 ~~~~~~~~~~~~ndv~~~D~~t~~W~~ 416 (470)
T PLN02193 390 DPLAHVGPGQLTDGTFALDTETLQWER 416 (470)
T ss_pred ccccccCccceeccEEEEEcCcCEEEE
Confidence 247888998876653
No 480
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.40 E-value=0.27 Score=53.03 Aligned_cols=243 Identities=16% Similarity=0.134 Sum_probs=136.5
Q ss_pred EEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001490 715 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 794 (1068)
Q Consensus 715 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 794 (1068)
...|.+.+..++.++.+..+..||-.... .... ........+++..+|..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 45667777778888888777776632211 1111 1334455677777787776
Q ss_pred EEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcC
Q 001490 795 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 872 (1068)
Q Consensus 795 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp 872 (1068)
+.. .+.+.+||+.+....+.-.+....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|...++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 665 58899999985433221111111222278999 899999999999999999988776666656999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCccc-CC-CCceEEEEeeCCCEEEEEeCCeEEE----EECCCceee
Q 001490 873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT-LA-PSETHIQFHKDQTRFLLVHETHLAI----YEAEELTCL 946 (1068)
Q Consensus 873 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~spdg~~la~~~d~~i~v----wd~~~~~~~ 946 (1068)
.+ +.+.++.|..+.+-...+..... ....+... .. .-...=.|..-|..+...-.+.+.+ ++-.++. +
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~p-v 243 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEP-V 243 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceeee----eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCc-c
Confidence 76 45556666655443333211100 00111100 00 0001112333344444322221111 1111111 1
Q ss_pred eeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490 947 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 993 (1068)
Q Consensus 947 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 993 (1068)
...+....+.+.++.|--||..+. +..-|.|.+-++.++++.+.+.
T Consensus 244 al~fq~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 244 ALQFQEKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred ceEeeecCCceeEEEEeccccccc-cccceeEEEEeccchHHHHHHH
Confidence 111223356788888888886444 6666777777888887766554
No 481
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.39 E-value=4.7 Score=40.67 Aligned_cols=75 Identities=9% Similarity=-0.062 Sum_probs=56.7
Q ss_pred EEEeeCCCEEEE-EeCCeEEEEECCCceeeeee------cc-------CCCcCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001490 918 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 983 (1068)
Q Consensus 918 ~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~ 983 (1068)
+.+...+.+|++ +.+|.+++||+.+++.+... +. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 446677887776 89999999999998876432 22 2457889999999998777664 688999998
Q ss_pred CCCcEEEEec
Q 001490 984 SNLEVQCRIL 993 (1068)
Q Consensus 984 ~~~~~~~~~~ 993 (1068)
+-+..+....
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 8877665444
No 482
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.20 E-value=3.3 Score=40.08 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=25.5
Q ss_pred cceEEEEECCCC------CEEEEEeCCcEEEEEEccC
Q 001490 373 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG 403 (1068)
Q Consensus 373 ~~V~~~~~spdg------~~las~~~d~~i~vwd~~~ 403 (1068)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999953 4688889999999998764
No 483
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=86.94 E-value=94 Score=38.99 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=18.0
Q ss_pred ccccEEEEEEecCCceEEEeecCc
Q 001490 709 KANKISRLTYNNGGQAIFALASNG 732 (1068)
Q Consensus 709 ~~~~i~~l~~s~~g~~l~~~~~dg 732 (1068)
+-+.+.+++++|||..+++-..+-
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~ 683 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNS 683 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCch
Confidence 566788999999998766655443
No 484
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.94 E-value=1.1e+02 Score=39.78 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=78.9
Q ss_pred EEECCCeEEEEEcCCce-------eeeee---------cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 001490 837 IGMDDSTILIYNARSSE-------VISKL---------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 900 (1068)
Q Consensus 837 sg~~dg~v~iwd~~~~~-------~~~~~---------~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~ 900 (1068)
.|-.||.|.-||-.+.. -+..+ .-..+.|..+.+++...-++-+. +..+.+=-. ........
T Consensus 618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~-r~~~e~G~ 695 (1774)
T PF11725_consen 618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQR-RNKVELGD 695 (1774)
T ss_pred eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Ccccccccc-cCCCCCCc
Confidence 35568999999975421 11111 11345666777776555444322 221211000 01111111
Q ss_pred eeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEE
Q 001490 901 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 980 (1068)
Q Consensus 901 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~v 980 (1068)
.+..+. ...|+.++.-.+.++++....|.+..+. ..+..+..-..+-.+.|..++...+..+.+ -..+|.++-
T Consensus 696 ~l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 696 ALEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred cccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 233222 1368999999999999999999999988 666655443445578999999988866544 556776654
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.61 E-value=16 Score=41.20 Aligned_cols=113 Identities=11% Similarity=0.053 Sum_probs=61.0
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC------CEEEEE--e--
Q 001490 862 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H-- 931 (1068)
Q Consensus 862 ~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg------~~la~~--~-- 931 (1068)
-...+.|+|.|||++|++--..|.|++++-.++.......+...... .-......|+|+|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~-~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND-AQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc-CCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34578899999998888765569999998665432211111111000 012467899999884 344432 1
Q ss_pred -------CCeEEEEECCCc-------eeee-eeccCCCcCEEEEEEecCCCEEEEEECC
Q 001490 932 -------ETHLAIYEAEEL-------TCLK-QWFPISSVPISQATFSCDCRMVFTSFVD 975 (1068)
Q Consensus 932 -------d~~i~vwd~~~~-------~~~~-~~~~~h~~~v~~l~fs~dg~~l~t~~~d 975 (1068)
...|.-|.+... +.+. .+.......-..|+|.|||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223544554321 1111 1111101223467899999877766544
No 486
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.56 E-value=13 Score=37.85 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=82.8
Q ss_pred EEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC---CeeeeEEeccccccCCeEEEEEec
Q 001490 488 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 564 (1068)
Q Consensus 488 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~~~v~~~~~~~ 564 (1068)
.+||+.+.+...........+.+-++-+||+++.+|+. .+|...+++++..+ ................--++..-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45777776554333233334445567899999988875 45677788888754 111111111111112334455668
Q ss_pred CCCEEEEEECCC-eEEEEEcCC-Ce-EEE--EEeC---CCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeec
Q 001490 565 AKDQILAAGDDH-VIKIWDMNK-VQ-LLT--TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 636 (1068)
Q Consensus 565 ~~~~l~~~s~dg-~i~iwd~~~-~~-~~~--~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 636 (1068)
||+.++.|+... +..+|.... .. ... .+.. .....--..+...|+|++++.+..+. .|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999999987664 455555422 11 111 1110 11111234677889999999888754 46688877665555
Q ss_pred cc
Q 001490 637 GV 638 (1068)
Q Consensus 637 ~~ 638 (1068)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
No 487
>PRK13613 lipoprotein LpqB; Provisional
Probab=86.45 E-value=44 Score=39.46 Aligned_cols=189 Identities=10% Similarity=0.029 Sum_probs=101.7
Q ss_pred CeeEEEEecCCCEEEEEeC-C-eEEEEEccCcee----EEEecCCCCCeEEEEEeCCCCCEEEEEEC--CC--eEEEEEc
Q 001490 780 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 849 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~d-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd~ 849 (1068)
.+.+++.|+++..+|...+ + .+.+..+..+.. ..... ....++.-.|.+ ++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence 6778999999999887763 3 466655533332 11111 233567777887 55 3333322 22 2555543
Q ss_pred CCceee--eeeccccc-CeEEEEEcCCCCEEEEEeC---CCcEEEEECCC---CceeeeeeeecCCCcccCCCCceEEEE
Q 001490 850 RSSEVI--SKLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQF 920 (1068)
Q Consensus 850 ~~~~~~--~~~~~h~~-~V~~l~~spdg~~l~s~s~---dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~ 920 (1068)
+|+.. .. ....+ .|..+..|+||..++.... .+.|.|=-+.. +............+. ..+.+++|
T Consensus 441 -~G~~~~V~~-~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W 514 (599)
T PRK13613 441 -DGEPVEVRT-PELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSW 514 (599)
T ss_pred -CCcEEEeec-cccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEE
Confidence 44432 11 12233 7999999999988876554 35565554433 221111111111111 24889999
Q ss_pred eeCCCEEEEE--eC--CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEECCCcE
Q 001490 921 HKDQTRFLLV--HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 978 (1068)
Q Consensus 921 spdg~~la~~--~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~v 978 (1068)
..++.+++.+ .. ..+...++........ ..+.-..+..++-..+.+ .|+.+..++.|
T Consensus 515 ~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 515 AGDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred cCCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 9999988854 23 3344444443222211 112344566677776666 45543555554
No 488
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.37 E-value=3.7 Score=41.37 Aligned_cols=78 Identities=8% Similarity=0.095 Sum_probs=54.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeee--eeecCCCcc----cCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCc
Q 001490 870 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR--SLQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 943 (1068)
Q Consensus 870 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~ 943 (1068)
+..++++|+....+|.+++||+.+.+..... +.+...... .....|..+.++.+|.-|++-.+|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999987644322 111111100 2224689999999999998877888999998755
Q ss_pred eeee
Q 001490 944 TCLK 947 (1068)
Q Consensus 944 ~~~~ 947 (1068)
..+.
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 4443
No 489
>PRK13614 lipoprotein LpqB; Provisional
Probab=86.28 E-value=61 Score=37.95 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=87.4
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC--eEEEEEcC-Ccee--
Q 001490 780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNAR-SSEV-- 854 (1068)
Q Consensus 780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~-~~~~-- 854 (1068)
.+.+++.|++++.+|...+..-.+|-...+...+.+. ....++.-.|.+ ++ .+-+...+. .|..+.-. +++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~-~g~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALT-SGSTLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCcceeee-cCCCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccccc
Confidence 6778999999999888874333444333333333222 133467778888 55 454444433 44444422 2111
Q ss_pred ----eeeeccccc-CeEEEEEcCCCCEEEEEe-CCCc--EEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE
Q 001490 855 ----ISKLEGHSK-RVTGLVFSDALNILVSSG-GDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 926 (1068)
Q Consensus 855 ----~~~~~~h~~-~V~~l~~spdg~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 926 (1068)
........+ .|..+..|+||..++... .+|. |.|=-+.....-....+...... .....+.+++|..++.+
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~sl 499 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDSTV 499 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCEE
Confidence 111122334 499999999998877643 4554 66654433211111122111110 00136889999999998
Q ss_pred EEEEe----CCeEEEEECCCce
Q 001490 927 FLLVH----ETHLAIYEAEELT 944 (1068)
Q Consensus 927 la~~~----d~~i~vwd~~~~~ 944 (1068)
++.+. +..+++..+..|.
T Consensus 500 ~V~~~~~~~~~~~~~v~v~~g~ 521 (573)
T PRK13614 500 VVTKASATSNVVPELLSVDAGQ 521 (573)
T ss_pred EEEeccCCCcceEEEEEeCCCC
Confidence 87732 2346777775443
No 490
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.68 E-value=47 Score=34.26 Aligned_cols=276 Identities=9% Similarity=0.059 Sum_probs=132.3
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceee
Q 001490 555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 634 (1068)
Q Consensus 555 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 634 (1068)
+-+..+.++ +++++.+..+.-++|.|+.+...-..+..-.... ..-.+.-.|++..++.-|.-+.+.|+.+.....
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 455666665 4678888888899999998754433322111101 223334458888888867678888887653222
Q ss_pred e---ccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccc
Q 001490 635 A---AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 711 (1068)
Q Consensus 635 ~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 711 (1068)
. ..........+++ .|++-..+..|+.+.+-|+........... .....
T Consensus 163 lagrya~~~~d~~~v~I------------------------SGn~AYvA~~d~GL~ivDVSnp~sPvli~~----~n~g~ 214 (370)
T COG5276 163 LAGRYALPGGDTHDVAI------------------------SGNYAYVAWRDGGLTIVDVSNPHSPVLIGS----YNTGP 214 (370)
T ss_pred eeeeeccCCCCceeEEE------------------------ecCeEEEEEeCCCeEEEEccCCCCCeEEEE----EecCC
Confidence 1 1111111122222 255556666777888888664332211111 11222
Q ss_pred cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490 712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 791 (1068)
Q Consensus 712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 791 (1068)
.+.++..+++..+++.... | +.+-|.+..+ .+.++. ..+......++.+.. .++
T Consensus 215 g~~sv~vsdnr~y~vvy~e-g-vlivd~s~~s-----------sp~~~g-----------syet~~p~~~s~v~V--s~~ 268 (370)
T COG5276 215 GTYSVSVSDNRAYLVVYDE-G-VLIVDVSGPS-----------SPTVFG-----------SYETSNPVSISTVPV--SGE 268 (370)
T ss_pred ceEEEEecCCeeEEEEccc-c-eEEEecCCCC-----------CceEee-----------ccccCCcccccceec--ccc
Confidence 5677777776654444332 2 3333332221 011111 111011222222333 344
Q ss_pred EEEEEe-CCeEEEEEccCcee---EEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEE
Q 001490 792 YLFSAS-GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 867 (1068)
Q Consensus 792 ~l~~~~-dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 867 (1068)
+...+. +..+.+-|++.... ...+.........+..+ +.++..+..+ ...+-+....+......+....+.+
T Consensus 269 ~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s 344 (370)
T COG5276 269 YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQS 344 (370)
T ss_pred eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC-ceEEEeCCChhhcccccCcceEeee
Confidence 544444 34455555543211 11121112123333333 2344444433 3444455443333333333333444
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECC
Q 001490 868 LVFSDALNILVSSGGDAQIFVWDVD 892 (1068)
Q Consensus 868 l~~spdg~~l~s~s~dg~i~iwd~~ 892 (1068)
.+.+-+.+.+-+...++-+.||+..
T Consensus 345 ~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 345 CDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred cceEEEeeEEEEeecCCCEEEEEec
Confidence 5555566778888888889999853
No 491
>PRK13615 lipoprotein LpqB; Provisional
Probab=85.60 E-value=80 Score=36.86 Aligned_cols=151 Identities=9% Similarity=0.015 Sum_probs=88.6
Q ss_pred eEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cceeeee
Q 001490 822 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCR 900 (1068)
Q Consensus 822 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~-~~~~~~~ 900 (1068)
..+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| ++-+.-.+...++..... ++..
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~--- 407 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH--- 407 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence 37889999 88888888778888887665 22222232 2236667788877 555554444455555433 2221
Q ss_pred eeecCCCcccCCCCceEEEEeeCCCEEEEE-e---CCeEEEEECC--Cc--eee----eeeccCCCcCEEEEEEecCCCE
Q 001490 901 SLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H---ETHLAIYEAE--EL--TCL----KQWFPISSVPISQATFSCDCRM 968 (1068)
Q Consensus 901 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~---d~~i~vwd~~--~~--~~~----~~~~~~h~~~v~~l~fs~dg~~ 968 (1068)
.+...-. ....|..+..|+||.++|.- . .++|+|--+. .+ ..+ ..+..+ ...+.++.|..++.+
T Consensus 408 ~v~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~l 483 (557)
T PRK13615 408 PVAVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDV 483 (557)
T ss_pred Eeecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEE
Confidence 1111111 12479999999999999873 2 2556654332 22 122 111112 348899999999987
Q ss_pred EEEEE---CCCcEEEEEcC
Q 001490 969 VFTSF---VDGTLSIHEAS 984 (1068)
Q Consensus 969 l~t~~---~dg~v~vwd~~ 984 (1068)
++.+. .+..+++..+.
T Consensus 484 aVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 484 ATLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEEeccCCCCceEEEEECC
Confidence 66552 23446665655
No 492
>PLN02153 epithiospecifier protein
Probab=85.38 E-value=63 Score=35.46 Aligned_cols=162 Identities=10% Similarity=0.033 Sum_probs=77.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eC-----------CeE
Q 001490 873 ALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------THL 935 (1068)
Q Consensus 873 dg~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d-----------~~i 935 (1068)
++++++.|+.+ ..+.+||..+.+-.....+....... .+....+..-++++.+.| .+ ..+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~---~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPE---ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCC---CceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 56777777754 24778888875533221111000010 122223334456655553 22 247
Q ss_pred EEEECCCceeeeeeccC--CCcCEEEEEEecCCCEEEEEECC-------------CcEEEEEcCCCcEEEEeccccccCC
Q 001490 936 AIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-------------GTLSIHEASNLEVQCRILSTAYLRP 1000 (1068)
Q Consensus 936 ~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~d-------------g~v~vwd~~~~~~~~~~~~~~~~~~ 1000 (1068)
.+||..+.+-......+ ...+-...+..-+++.++.++.+ ..+.+||..+.+....-. ....|.
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~-~g~~P~ 240 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET-TGAKPS 240 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc-cCCCCC
Confidence 88998876544311111 01111111123466666665532 358889988876653211 111111
Q ss_pred CCccCcccceEEEECCCCCCEEEEEeCC--------------CcEEEEeCCCCCCCCccCC
Q 001490 1001 TTSCLHVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLP 1047 (1068)
Q Consensus 1001 ~~~~~~~~~~~~~~~p~~~~~l~~~~~d--------------g~i~~w~~~~~~~~~~~~~ 1047 (1068)
. ....+++.. ++.+++.|+.. +.|..+|+ ....|..++
T Consensus 241 ~-----r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~ 292 (341)
T PLN02153 241 A-----RSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLG 292 (341)
T ss_pred C-----cceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEc--CccEEEecc
Confidence 1 111122222 35788888852 14555555 455788765
No 493
>PLN02153 epithiospecifier protein
Probab=85.33 E-value=63 Score=35.45 Aligned_cols=154 Identities=12% Similarity=0.041 Sum_probs=77.4
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCcee--eeeecc---cccCeEEEEEcCCCCEEEEEeCC-----------CcEEEE
Q 001490 831 DNNVIAIGMDD-----STILIYNARSSEV--ISKLEG---HSKRVTGLVFSDALNILVSSGGD-----------AQIFVW 889 (1068)
Q Consensus 831 d~~~lasg~~d-----g~v~iwd~~~~~~--~~~~~~---h~~~V~~l~~spdg~~l~s~s~d-----------g~i~iw 889 (1068)
++++++.|+.+ ..+.+||+.+.+- +..+.. ........+..-++++.+.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56788888754 2578899887542 222210 01111112223356777777754 247788
Q ss_pred ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-e-------------CCeEEEEECCCceeeeeeccC--C
Q 001490 890 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------------ETHLAIYEAEELTCLKQWFPI--S 953 (1068)
Q Consensus 890 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~-------------d~~i~vwd~~~~~~~~~~~~~--h 953 (1068)
|..+.+-.. +........ .+....+..-++++.+.+ . .+.+.+||..+.+....-..+ .
T Consensus 165 d~~~~~W~~---l~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 165 NIADGKWVQ---LPDPGENFE--KRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred ECCCCeEee---CCCCCCCCC--CCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 888765332 222110000 011111223466665552 1 145889998877654321111 1
Q ss_pred CcCEEEEEEecCCCEEEEEECC--------------CcEEEEEcCCCcEE
Q 001490 954 SVPISQATFSCDCRMVFTSFVD--------------GTLSIHEASNLEVQ 989 (1068)
Q Consensus 954 ~~~v~~l~fs~dg~~l~t~~~d--------------g~v~vwd~~~~~~~ 989 (1068)
..+....+...+++.++.|+.. ..+..+|+.+.+..
T Consensus 240 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 240 SARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 1111122233467778888752 25778888777654
No 494
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.16 E-value=48 Score=38.22 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCEEEEE---ECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecC-C
Q 001490 831 DNNVIAIG---MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-D 906 (1068)
Q Consensus 831 d~~~lasg---~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~ 906 (1068)
++-+++.+ ...+...++|.. |..+..+.........+.+.++|.+++..+ ..++.+|+..........-... .
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYD 190 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-
T ss_pred CcEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccc
Q ss_pred CcccCCCCceEEEEeeCCCEEEEEe--------------CCeEEEEECCCceeeeeeccCC------C------------
Q 001490 907 GVMTLAPSETHIQFHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPIS------S------------ 954 (1068)
Q Consensus 907 ~~~~~~~~v~~~~~spdg~~la~~~--------------d~~i~vwd~~~~~~~~~~~~~h------~------------ 954 (1068)
-|.. +..-|+|.+|+.+. +..|..+| .+|+.+..|-... .
T Consensus 191 ~HHD-------~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~ 262 (477)
T PF05935_consen 191 FHHD-------IDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDIS 262 (477)
T ss_dssp B-S--------EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred cccc-------cEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccc
Q ss_pred --------cCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccce----------EEEEC
Q 001490 955 --------VPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH----------AIAAH 1015 (1068)
Q Consensus 955 --------~~v~~l~fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 1015 (1068)
..+.++.+.+ ++.+|+++=.-..|...|..++++...+.....-.......-..++ .-.|.
T Consensus 263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~ 342 (477)
T PF05935_consen 263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFD 342 (477)
T ss_dssp -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS--
T ss_pred cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCc
Q ss_pred CCCCCEEEEEeCCC---cEEEEe
Q 001490 1016 PLKPTQFAVGLTNG---EVYVIE 1035 (1068)
Q Consensus 1016 p~~~~~l~~~~~dg---~i~~w~ 1035 (1068)
..-++.-+.--.+| .|.++|
T Consensus 343 ~~~gQH~~~~~~~g~~~~l~vFD 365 (477)
T PF05935_consen 343 WFWGQHTAHLIPDGPQGNLLVFD 365 (477)
T ss_dssp --SS-EEEEE-TTS---SEEEEE
T ss_pred ccccccceEEcCCCCeEEEEEEE
No 495
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.93 E-value=3.7 Score=48.19 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=77.5
Q ss_pred CceEEEEcC-CCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccc--cccceeeeeecCCCcceEEEEEC--CCCCE
Q 001490 312 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGA--CSMLFKTALVRDPGVSVNRVVWS--PDGSL 386 (1068)
Q Consensus 312 ~V~~v~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~h~~~V~~~~~s--pdg~~ 386 (1068)
.|+.+...- .++.+|+.+..||.|.+|.+++-....... .-+... .....+......-...++.++++ ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 355554433 223478888999999999874310000000 000000 00000000111234589999999 88899
Q ss_pred EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCC--C--cEEEEEEeCCCcEEEEEC
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--K--QISVITCGDDKTIKVWDA 448 (1068)
Q Consensus 387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~--~--~~~l~s~~~d~~i~iwd~ 448 (1068)
||+++....|.||-............-..|...|.+|+|.++. . ...+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999888888888665421111110111366789999997764 1 136888899999998886
No 496
>PRK13614 lipoprotein LpqB; Provisional
Probab=84.69 E-value=54 Score=38.36 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=86.5
Q ss_pred CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceee-eeecccccCeEEEEEcCCCCEEEEEeCCC--cEEEEECCC-Cce
Q 001490 821 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDG-WGI 896 (1068)
Q Consensus 821 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~spdg~~l~s~s~dg--~i~iwd~~~-~~~ 896 (1068)
.+.+++.++ ++..+|....|+. .+|-...+... ..+.+. .++.-.|.++| ++-+...+. .|....-.. ++.
T Consensus 344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~--~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSGS--TLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecCC--CccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence 678899999 8888888877762 33432223322 233332 36677888887 555554433 444443221 110
Q ss_pred eeee--eeecCCCcccCCCCceEEEEeeCCCEEEE--EeCCe--EEEEEC---CCcee--eeeec-cCCCcCEEEEEEec
Q 001490 897 QTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETH--LAIYEA---EELTC--LKQWF-PISSVPISQATFSC 964 (1068)
Q Consensus 897 ~~~~--~~~~~~~~~~~~~~v~~~~~spdg~~la~--~~d~~--i~vwd~---~~~~~--~~~~~-~~h~~~v~~l~fs~ 964 (1068)
.... .+.. .... ...|..+..|+||.++|. ..++. |+|--+ ..|.. +.... .++...+.++.|..
T Consensus 419 ~~~~~~~v~~-~~l~--g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~ 495 (573)
T PRK13614 419 AQAPTVTLTA-DWLA--GRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVG 495 (573)
T ss_pred ccccceeecc-cccC--CCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcC
Confidence 0000 1111 1111 124999999999999987 34665 665433 34541 11110 12246889999999
Q ss_pred CCCEEEEEEC---CCcEEEEEcCCC
Q 001490 965 DCRMVFTSFV---DGTLSIHEASNL 986 (1068)
Q Consensus 965 dg~~l~t~~~---dg~v~vwd~~~~ 986 (1068)
++.+++.+.. +..+++..+..|
T Consensus 496 ~~sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 496 DSTVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred CCEEEEEeccCCCcceEEEEEeCCC
Confidence 9987766532 234566666444
No 497
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.62 E-value=2.6 Score=45.27 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=94.2
Q ss_pred eeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceee-eeec-cccc----CeE-EEEEcCCCCEEEEEeC
Q 001490 810 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLE-GHSK----RVT-GLVFSDALNILVSSGG 882 (1068)
Q Consensus 810 ~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~~~-~h~~----~V~-~l~~spdg~~l~s~s~ 882 (1068)
+.++.+......+..+-..| ||+.|..-+. .++.++++.+.... +++. ...+ .|+ .+..-..|.-|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 33444555667888899999 8998887665 68899988764321 1111 1111 122 2222345677888889
Q ss_pred CCcEEEE-ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEE
Q 001490 883 DAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA 960 (1068)
Q Consensus 883 dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l 960 (1068)
||.|.-| |+..+.......++..+-.. ..+..+.=-..-+-+++ ...|++.++.....+.+.. ..--..+.-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~p---a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~--~~~~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAP---AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF--ERAYQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCc---ccceeeccccccceEEEEcCCCceeeeecccCcceeh--hhhhcCccee
Confidence 9988877 44433222211111111110 12222211111122333 4556666665443333221 1112356778
Q ss_pred EEecCCCEEEEEECCCcEEEEEcCCCcEE
Q 001490 961 TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 989 (1068)
Q Consensus 961 ~fs~dg~~l~t~~~dg~v~vwd~~~~~~~ 989 (1068)
++||.+.+|++- ..|.++++.+++....
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCCC
Confidence 999999999965 5678999998877554
No 498
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.24 E-value=81 Score=35.83 Aligned_cols=272 Identities=16% Similarity=0.085 Sum_probs=132.6
Q ss_pred CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 391 (1068)
Q Consensus 312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~ 391 (1068)
.|.++.+.-.|. | -.|+.|| +..+|..+|+.+.... .....+|.++.-+-.|+ |.+|+
T Consensus 166 ~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-LWVGT 223 (671)
T ss_pred cceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-EEEEe
Confidence 788999999997 3 5566654 6777877777665311 01114566665555554 56677
Q ss_pred CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCC--CcEEEEe
Q 001490 392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC 468 (1068)
Q Consensus 392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~--~~v~~i~ 468 (1068)
.+| |.+.+.++.+.... -..-..+.|..+.=..+|. +-.|+..|-. ......+...... +-|. ..|.++.
T Consensus 224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~-r~~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLW-RTRLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccce-eEecCCCCccccccccCCcccccccee
Confidence 777 78877766321110 0011233455444444454 4445544422 2233333332222 1122 2233332
Q ss_pred eeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001490 469 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 546 (1068)
Q Consensus 469 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 546 (1068)
-+.+| -|-+++.+|.+++-+-+-..........+..+...+.+| .+..+-.... .+.+.+-+..+|..++.
T Consensus 297 --~D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s 369 (671)
T COG3292 297 --LDTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS 369 (671)
T ss_pred --eccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence 23343 456666666665543221111111111111111111122 1111111110 12355555566766666
Q ss_pred EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC-CeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001490 547 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 624 (1068)
Q Consensus 547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 624 (1068)
..... ...|+.+++..++ .+-.|+...-+..|+.++ +......... ....|..+.=.|+++ |..|+.+|.++.
T Consensus 370 v~q~R--g~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 43333 3457777777744 556666665566777666 3333333222 234577777788887 777888776544
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.91 E-value=6.3 Score=38.15 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.3
Q ss_pred cCeEEEEEcCCC------CEEEEEeCCCcEEEEECCC
Q 001490 863 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 893 (1068)
Q Consensus 863 ~~V~~l~~spdg------~~l~s~s~dg~i~iwd~~~ 893 (1068)
..|.+++|||-| .+|++...++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999955 5789999999999998774
No 500
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.58 E-value=22 Score=44.83 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=42.5
Q ss_pred cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001490 507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 586 (1068)
Q Consensus 507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 586 (1068)
++.+..+......++... .+.+.+|+.........+.... ...++++..++++..||.+..||...+
T Consensus 200 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNG--------QLESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccceeeeecCCCcceeee-----eeeeeehhcccccchhhccccc--------ccCccCCceEEEEEecCCEEeeecCCC
Confidence 444555444444444332 3346666655444433333322 112788999999999999999999988
Q ss_pred eE
Q 001490 587 QL 588 (1068)
Q Consensus 587 ~~ 588 (1068)
+.
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 66
Done!