Query 001490
Match_columns 1068
No_of_seqs 913 out of 4951
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 15:53:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001490.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_793-796//hhsearch_pdb/001490hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 602.6 65.1 620 301-1038 606-1249(1249)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 584.8 80.9 568 302-1035 8-577 (577)
3 1nr0_A Actin interacting prote 1.0 1 1 568.8 76.2 577 307-984 15-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 544.4 69.5 589 367-1042 610-1211(1249)
5 1nr0_A Actin interacting prote 1.0 1 1 543.5 68.6 572 370-1037 16-610 (611)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 540.9 74.4 555 273-982 21-577 (577)
7 1pgu_A Actin interacting prote 1.0 1 1 525.2 70.0 558 307-985 15-614 (615)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 509.9 67.2 633 305-1040 12-830 (902)
9 1pgu_A Actin interacting prote 1.0 1 1 498.3 62.8 560 368-1038 14-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 495.7 57.5 600 368-1047 13-792 (902)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=602.64 Aligned_cols=620 Identities=14% Similarity=0.181 Sum_probs=512.5
Q ss_pred CEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 12442135888956989718987599998286747999568986113420134313423421254331499866699999
Q 001490 301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380 (1068)
Q Consensus 301 ~~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 380 (1068)
.....+.+|.+.|++++|||+|+ ++++|+.||.|++||+.+++.+.. +.+|...|.+++|
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 665 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAF 665 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEE
T ss_conf 32278716666489999879999-899994889499999899978887-------------------6067777899999
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCC
Q ss_conf 99999889995896899998368976421089735235587999718999179999928993999978999624695268
Q 001490 381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 460 (1068)
Q Consensus 381 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 460 (1068)
+|++++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++++.|+.|++||+.+++++..+.+|
T Consensus 666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h 742 (1249)
T 3sfz_A 666 SSDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742 (1249)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC
T ss_pred ECCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCC
T ss_conf 2699989998189959998779993689---9958997379999840899659999808970999989996342201277
Q ss_pred CCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCC-------------CCCEEEEEECCCCCEEEEEEECC
Q ss_conf 97679986310189319999985891999958899816872489-------------97189999814998899996088
Q 001490 461 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------------GLGCTRMAYSANGRRLFSCGTSK 527 (1068)
Q Consensus 461 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~i~~s~d~~~l~~~~~~~ 527 (1068)
...|.+++|++ ++.++++++.||.|++||+........+... ...+.+++|+|+++.+++++
T Consensus 743 ~~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--- 817 (1249)
T 3sfz_A 743 TNSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--- 817 (1249)
T ss_dssp SSCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE---
T ss_pred CCCEEEEEEEC--CCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC---
T ss_conf 79788999925--9998999978985999968888655302023210246776445650179999978998899975---
Q ss_pred CCCEEEEEEECCCCEEEEEEE-CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEE
Q ss_conf 894049999478870556874-2334568737999913999899997899099999589807999908999899752999
Q 001490 528 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 606 (1068)
Q Consensus 528 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 606 (1068)
++.+.+|+..++.....+. +|. ..+.++.|+|++..+++++.||.|++|+..++..+..+..+ ...+.+++|
T Consensus 818 --~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~ 890 (1249)
T 3sfz_A 818 --KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMF 890 (1249)
T ss_dssp --TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEE
T ss_pred --CCCEEEEEECCCCCEEEECCCCC---CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCC--CCCEEEEEE
T ss_conf --89599999568972357747877---76079998278888999947986999986789565322787--665689999
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCC
Q ss_conf 15999999998899199998799964552133466503547737864000012467056448998775322010256520
Q 001490 607 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 686 (1068)
Q Consensus 607 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 686 (1068)
+|++..+++++.|+.+++|+............ .......+ .++...++.......+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGL 946 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSE
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECC--CCEEEEEE----------------------CCCCCEEEEECCCCCE
T ss_conf 89999899995897289887466520102113--31036897----------------------5998689981377624
Q ss_pred EEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 01012322786651000377334432899999558865999412760798764677657775410015894237899993
Q 001490 687 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 766 (1068)
Q Consensus 687 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1068)
.++....... . ......+.+++++|+++.+++++.+|.+++|++.....
T Consensus 947 ~~~~~~~~~~---~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~---------------------- 995 (1249)
T 3sfz_A 947 QLIAGKTGQI---D------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV---------------------- 995 (1249)
T ss_dssp EEEEESSCCE---E------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC----------------------
T ss_pred EEEECCCCEE---E------ECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCE----------------------
T ss_conf 8984476508---9------72567278999958997799986999889997578723----------------------
Q ss_pred EEEECCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 2330578999999830999824999999994-991999994675357775589998699998079998999997898099
Q 001490 767 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 845 (1068)
Q Consensus 767 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~ 845 (1068)
... + .+|...|.+++|+|+++++++++ |+.|++|++.+++... +..|...+.+++|++ ++ .+++++.||.|+
T Consensus 996 ~~~--~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A 996 FSS--G--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVK 1068 (1249)
T ss_dssp EEE--C--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEE
T ss_pred EEE--C--CCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEE-EECCCCCEEEEEECC-CC-CEEEEECCCCEE
T ss_conf 443--0--3677716899998999989998699879999879996689-852787389999908-99-589997889689
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCC
Q ss_conf 99948850356501455586999992899999999389839999879982453333314798656899825999920899
Q 001490 846 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 925 (1068)
Q Consensus 846 iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 925 (1068)
+||+.+++....+.+|.+.|.+++|+||++++++++.|++|++||+.++. .+....+|.. .|.+++|+|||+
T Consensus 1069 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1069 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGI 1140 (1249)
T ss_dssp EEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSS
T ss_pred EEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC-----EEEEECCCCC---CEEEEEECCCCC
T ss_conf 98889886558874668848999998999989998499948998789850-----0125506877---679999979999
Q ss_pred EEEE-EECCEEEEEECCCCEEEEEE--------CCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCC
Q ss_conf 9999-95790999987874033230--------13777688999995289999999899929999958990898962332
Q 001490 926 RFLL-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 996 (1068)
Q Consensus 926 ~l~~-~~d~~i~iwd~~~~~~~~~~--------~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 996 (1068)
+|++ +.|+.|++||+.+++.+..+ ..+|...|++++|+|||++|++++ |.|++||+.+++.+..+..+
T Consensus 1141 ~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~- 1217 (1249)
T 3sfz_A 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTN- 1217 (1249)
T ss_dssp EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCS-
T ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC--CEEEEEECCCCCEEEEEECC-
T ss_conf 899982899799998899945788514444421025674289999978999899779--85999898889500464004-
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 238987667634169998899998899992899199990789
Q 001490 997 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
... ..+++|+| |+.++++++.||.|++|++.+
T Consensus 1218 -------~~~--i~~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1218 -------GTN--LKKIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp -------SCC--CCCCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred -------CCC--CCEEEECC-CCCEEEEECCCCEEEEEEECC
T ss_conf -------775--32799978-987799966881799976439
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=584.83 Aligned_cols=568 Identities=22% Similarity=0.340 Sum_probs=462.8
Q ss_pred EEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 24421358889569897189875999982867479995689861134201343134234212543314998666999999
Q 001490 302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 381 (1068)
Q Consensus 302 ~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 381 (1068)
..+.|+||++.|++++|||||+ ++|+|+.|++|+|||. +++.+.. +.+|...|.+++|+
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fs 66 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFS 66 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEEC
T ss_pred EEEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEEC-CCCEEEE-------------------EECCCCCEEEEEEC
T ss_conf 9439878998579999989989-9999938998999979-9978999-------------------96898998999998
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCC
Q ss_conf 99998899958968999983689764210897352355879997189991799999289939999789996246952689
Q 001490 382 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 461 (1068)
Q Consensus 382 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 461 (1068)
||+++||+++.|++|++||... +.+ ..+.+|...|.+++|+|+++ ++++++.|+.+++|+.. ........++.
T Consensus 67 pdg~~las~~~d~~i~vWd~~~-~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~ 139 (577)
T 2ymu_A 67 PDGQTIASASDDKTVKLWNRNG-QLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHS 139 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTS-CEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCS
T ss_pred CCCCEEEEEECCCEEEEEECCC-CEE---EEEECCCCCEEEEEECCCCC--EEEEECCCCCEEECCCC-CCEEEECCCCC
T ss_conf 9999999996989799998999-789---99978999889999989999--89998079833520235-52001104777
Q ss_pred CCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf 76799863101893199999858919999588998168724899718999981499889999608889404999947887
Q 001490 462 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 541 (1068)
Q Consensus 462 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 541 (1068)
..+..+.+.+ ++..+++++.++.+++|+... ........+...+.++.++|+++++++++. ++.|++|+. ++
T Consensus 140 ~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~ 211 (577)
T 2ymu_A 140 SSVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NG 211 (577)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TS
T ss_pred CCEEEEEEEC--CCCCCEECCCCCCEECCCCCE-EEEEECCCCCCCEEEEEECCCCCEEEEECC----CCEEEEEEC-CC
T ss_conf 7435554203--776320025553100000000-000002687763566541699778999859----998999949-99
Q ss_pred EEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCE
Q ss_conf 05568742334568737999913999899997899099999589807999908999899752999159999999988991
Q 001490 542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 621 (1068)
Q Consensus 542 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 621 (1068)
+.+..+.+|. ..+.+++|+|+++++++++.|+.|++|+. +++.+..+..+ ...+.+++|+|+++.+++++.|+.
T Consensus 212 ~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~ 285 (577)
T 2ymu_A 212 QLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKT 285 (577)
T ss_dssp CEEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSC
T ss_pred CEEEEEECCC---CCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECC--CCCEEEEEECCCCCEEEEEECCCE
T ss_conf 6899994688---98899999799999999918998999959-99799998068--898799999689999999959997
Q ss_pred EEEEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCE
Q ss_conf 99998799964552133466503547737864000012467056448998775322010256520010123227866510
Q 001490 622 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 701 (1068)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 701 (1068)
+++|+... +....+.+
T Consensus 286 i~~w~~~~-~~~~~~~~--------------------------------------------------------------- 301 (577)
T 2ymu_A 286 VKLWNRNG-QLLQTLTG--------------------------------------------------------------- 301 (577)
T ss_dssp EEEEETTS-CEEEEECC---------------------------------------------------------------
T ss_pred EEEEECCC-CEEEEEEC---------------------------------------------------------------
T ss_conf 99994899-58999706---------------------------------------------------------------
Q ss_pred EECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCE
Q ss_conf 00377334432899999558865999412760798764677657775410015894237899993233057899999983
Q 001490 702 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 781 (1068)
Q Consensus 702 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 781 (1068)
|...|.+++|+|+++.+++++.++.+++|+..... +.. +. +|...+
T Consensus 302 -------h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~~~--~~--~~~~~v 347 (577)
T 2ymu_A 302 -------HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------LQT--LT--GHSSSV 347 (577)
T ss_dssp -------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------EEE--EC--CCSSCE
T ss_pred -------CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE-----------------------EEE--EE--CCCCCE
T ss_conf -------88976999999999999999699959999699972-----------------------578--74--788977
Q ss_pred EEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECC
Q ss_conf 0999824999999994-991999994675357775589998699998079998999997898099999488503565014
Q 001490 782 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 860 (1068)
Q Consensus 782 ~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~ 860 (1068)
.+++|+|+++++++++ ++.+++|+. +++.+..+..|...|++++|+| ++++|++++.|+.|++|+. +++.+..+.+
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~ 424 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTG 424 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEEC-CCCEEEEECC
T ss_conf 99999899999999969998999908-9978998527889748999989-9999999949998999969-9978989628
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEEE-EECCEEEEEE
Q ss_conf 555869999928999999993898399998799824533333147986568998259999208999999-9579099998
Q 001490 861 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 939 (1068)
Q Consensus 861 h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~iwd 939 (1068)
|...|++++|+||+++|++++.|+.|++|+.... .+....+|.. .+.+++|+||+++|++ +.|+.|++|+
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~las~~~d~~i~iw~ 495 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWN 495 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC------EEEEECCCCC---CEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 8997579999899999999939998999979998------8999727899---778999969999999991989799993
Q ss_pred CCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 78740332301377768899999528999999989992999995899089896233223898766763416999889999
Q 001490 940 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1019 (1068)
Q Consensus 940 ~~~~~~~~~~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1019 (1068)
. +++++.. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+.. |.. .+.+++|+| |+
T Consensus 496 ~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~--------h~~--~v~~~~fs~-dg 561 (577)
T 2ymu_A 496 R-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--------HSS--SVWGVAFSP-DG 561 (577)
T ss_dssp T-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC--------CSS--CEEEEEECT-TS
T ss_pred C-CCCEEEE-EECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECC--------CCC--CEEEEEECC-CC
T ss_conf 9-9978999-8679999899999189999999989699999969-9978989718--------888--878999968-99
Q ss_pred CEEEEEECCCCEEEEE
Q ss_conf 8899992899199990
Q 001490 1020 TQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus 1020 ~~l~~~~~dg~i~~w~ 1035 (1068)
++|++++.||+|++||
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCEEEEEC
T ss_conf 9999990899999969
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=568.78 Aligned_cols=577 Identities=15% Similarity=0.180 Sum_probs=444.8
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 35888956989718987599998286747999568986113420134313423421254331499866699999999998
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386 (1068)
Q Consensus 307 ~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~ 386 (1068)
..+++.+.+++|+|||+ ++++++ ++.|++|++.+++.... +.+|...|.+++|+|||++
T Consensus 15 ~~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~ 73 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYY 73 (611)
T ss_dssp CCCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCEEEEEECCCCC-EEEECC-CCEEEEECCCCCCCCEE-------------------ECCCCCCEEEEEECCCCCE
T ss_conf 74068236976679999-799679-99799945787242737-------------------6589986599999999968
Q ss_pred EEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECC----CCEEEEECCCCCEEEEECCCCC
Q ss_conf 899958968999983689764210897352355879997189991799999289----9399997899962469526897
Q 001490 387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGA 462 (1068)
Q Consensus 387 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~ 462 (1068)
||+|+.|++|++||+.+++.. ....+.+|.+.|.+++|+|+++ .+++++.+ +.|++|| ++.....+.+|..
T Consensus 74 lasg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~ 148 (611)
T 1nr0_A 74 CASGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQAR 148 (611)
T ss_dssp EEEEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSS
T ss_pred EEEEECCCCEEEEECCCCCCE-EEEEECCCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEEEE--CCCCCCEECCCCC
T ss_conf 999948997899489898415-6676225578448999899999--7999989977366999963--8997632547889
Q ss_pred CEEEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf 67998631018931-99999858919999588998168724899718999981499889999608889404999947887
Q 001490 463 PVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 541 (1068)
Q Consensus 463 ~v~~i~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 541 (1068)
.|.+++|+| ++. .|++++.|+.|++|+....+....+..|...|.+++|+|+++++++++. |+.|++||..++
T Consensus 149 ~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g 222 (611)
T 1nr0_A 149 AMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDG 222 (611)
T ss_dssp CEEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTC
T ss_pred CCEEEEECC--CCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC----CCCEEEEECCCC
T ss_conf 836999889--99829999928980999979997576652002571699999799998999989----991999889998
Q ss_pred EEEEEEE-------CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-CCCCEEEEECCCCEE
Q ss_conf 0556874-------23345687379999139998999978990999995898079999089998-997529991599999
Q 001490 542 AIKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLL 613 (1068)
Q Consensus 542 ~~~~~~~-------~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l 613 (1068)
+....+. +|. ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+... .....+.| ++..+
T Consensus 223 ~~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l 297 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQAL 297 (611)
T ss_dssp CEEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCE
T ss_pred CEEEEECCCCCCCCCCC---CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEE
T ss_conf 28665136643235667---87899999799999999908980999968887013440478876640689997--38879
Q ss_pred EEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCEEECCCC
Q ss_conf 99988991999987999645521334665035477378640000124670564489987753220102565200101232
Q 001490 614 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 693 (1068)
Q Consensus 614 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 693 (1068)
++++.|+.+++|+...+.....+.+|...+.+++++ |+++++++++.|+++++|++..
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTT
T ss_pred EEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEE----------------------CCCCEEEEEECCCCEEEEECCC
T ss_conf 999589968999688997446983788888999991----------------------8999899995898499997887
Q ss_pred CCCCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCC
Q ss_conf 27866510003773344328999995588659994127607987646776577754100158942378999932330578
Q 001490 694 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 773 (1068)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1068)
.... .....+|...+.++.|++++ .+++++.|+.+++|+......... . .....
T Consensus 356 ~~~~-----~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~-- 409 (611)
T 1nr0_A 356 GISN-----RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK-- 409 (611)
T ss_dssp CCEE-----ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE--
T ss_pred CCEE-----EECCCCCCCEEEEEEECCCC-CEEEEECCCCEEEEECCCCCCCCC-----------------C-EEEEE--
T ss_conf 9256-----32166776507899987899-699998489668954688543565-----------------2-12001--
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCE
Q ss_conf 99999983099982499999999499199999467535777558999869999807999899999789809999948850
Q 001490 774 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 853 (1068)
Q Consensus 774 ~~~~~~~v~~i~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 853 (1068)
......+++|+|+++.++++.++.+++|+. ++ +..+. +...+.+++|+| |+++|++|+.|++|++|++.++.
T Consensus 410 ---~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~--~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 410 ---LSSQPLGLAVSADGDIAVAACYKHIAIYSH--GK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp ---CSSCEEEEEECTTSSCEEEEESSEEEEEET--TE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTE
T ss_pred ---CCCCCCEEEEECCCCEEEEEECCEEEEEEC--CC-EEEEE-CCCCCEEEEEEC-CCCEEEEECCCCEEEEEECCCCC
T ss_conf ---489970799807996999996763999848--94-34640-688954999928-99899996899739999945992
Q ss_pred E--EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC-CCEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEEE-
Q ss_conf 3--565014555869999928999999993898399998799-824533333147986568998259999208999999-
Q 001490 854 V--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 929 (1068)
Q Consensus 854 ~--~~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 929 (1068)
. ... .+|...|++++|+|||++|++++.|++|++|++.+ ++... .....+|.. .|.+++|+|||++|++
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATG 554 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEE
T ss_pred EEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEE---EEEEEECCC---CEEEEEECCCCCEEEEE
T ss_conf 224101-57788607999989999899994899899988577872232---102640466---42589989989979999
Q ss_pred EECCEEEEEECCCCEEEE-EECCCC-CCCEEEEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 957909999878740332-301377-7688999995289999999899929999958
Q 001490 930 VHETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 930 ~~d~~i~iwd~~~~~~~~-~~~~~h-~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~ 984 (1068)
+.|++|++|++.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 555 s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 555 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 7997299997887555632644467656711899858997-9995288778998444
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=544.40 Aligned_cols=589 Identities=16% Similarity=0.188 Sum_probs=496.1
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf 31499866699999999998899958968999983689764210897352355879997189991799999289939999
Q 001490 367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446 (1068)
Q Consensus 367 ~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iw 446 (1068)
.+.+|.+.|.+++|+|||+++|+|+.||+|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCC--EEEEEECCCEEEEE
T ss_conf 871666648999987999989999488949999989997888---7606777789999926999--89998189959998
Q ss_pred ECCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 78999624695268976799863101893199999858919999588998168724899718999981499889999608
Q 001490 447 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 526 (1068)
Q Consensus 447 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~ 526 (1068)
|+.+++.+..+.+|...|.+++|++..++.++++++.|+.|++||+.++.....+..|...+.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEEC-
T ss_conf 7799936899958997379999840899659999808970999989996342201277797889999259998999978-
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCC----------CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCC
Q ss_conf 8894049999478870556874233----------456873799991399989999789909999958980799990899
Q 001490 527 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 596 (1068)
Q Consensus 527 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 596 (1068)
++.|++||+.++.....+.... .....+.+++|+|++..+++++ ++.+.+|+..++.....+...
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~- 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG- 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred ---CCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCEEEECCC-
T ss_conf ---985999968888655302023210246776445650179999978998899975-895999995689723577478-
Q ss_pred CCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 98997529991599999999889919999879996455213346650354773786400001246705644899877532
Q 001490 597 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 676 (1068)
Q Consensus 597 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1068)
+...+.+++|+|++.++++++.++.|++|+..++.....+.+|...+.+++|+ |+++.
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~ 896 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSS 896 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEEC----------------------CCCCE
T ss_conf 77760799982788889999479869999867895653227876656899998----------------------99998
Q ss_pred CEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEECCCC
Q ss_conf 20102565200101232278665100037733443289999955886599941276079876467765777541001589
Q 001490 677 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 756 (1068)
Q Consensus 677 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 756 (1068)
+++++.|+.+++|+.......... .........+.+++..++.....+.+.++.....
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 954 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG-------------- 954 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC--------------
T ss_pred EEEEECCCEEEEEECCCCCEEEEE--------CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC--------------
T ss_conf 999958972898874665201021--------1331036897599868998137762489844765--------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEE
Q ss_conf 42378999932330578999999830999824999999994-99199999467535777558999869999807999899
Q 001490 757 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 835 (1068)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l 835 (1068)
..... +...+.+++++|+++++++++ +|.|.+|++.+++....+.+|...|++++|+| +++++
T Consensus 955 --------~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l 1018 (1249)
T 3sfz_A 955 --------QIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTL 1018 (1249)
T ss_dssp --------CEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCE
T ss_pred --------EEEEC-------CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECC-CCCEE
T ss_conf --------08972-------567278999958997799986999889997578723443036777168999989-99989
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 99978980999994885035650145558699999289999999938983999987998245333331479865689982
Q 001490 836 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 915 (1068)
Q Consensus 836 asg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 915 (1068)
++++.||.|++|++.+++... +.+|...|.+++|+|++ .+++++.|+.|++||+.+++. .....+|.. .+
T Consensus 1019 ~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~---~v 1088 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERDFTCHQG---TV 1088 (1249)
T ss_dssp EEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEEEECCSS---CC
T ss_pred EEECCCCEEEEEECCCCCEEE-EECCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCE-----EEEECCCCC---CE
T ss_conf 998699879999879996689-85278738999990899-589997889689988898865-----588746688---48
Q ss_pred EEEEEEECCCEEEE-EECCEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 59999208999999-95790999987874033230137776889999952899999998999299999589908989623
Q 001490 916 THIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 994 (1068)
Q Consensus 916 ~~~~~s~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 994 (1068)
.+++|+|+++++++ +.|+.+++||+.++..+.. ..+|...|++++|+|||++|++++.||.|++||+.+++....+.+
T Consensus 1089 ~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~ 1167 (1249)
T 3sfz_A 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1167 (1249)
T ss_dssp CCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCC
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCEEEE-ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
T ss_conf 9999989999899984999489987898500125-506877679999979999899982899799998899945788514
Q ss_pred CCCCCC-CCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEECCCCCCC
Q ss_conf 322389-876676341699988999988999928991999907899998
Q 001490 995 TAYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1042 (1068)
Q Consensus 995 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~ 1042 (1068)
...... ..|. ..+.+++|+| |+.++++++ |.|++|++...+..
T Consensus 1168 ~~~~~~~~~~~--~~v~~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~~ 1211 (1249)
T 3sfz_A 1168 ISVEEGTATHG--GWVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDSS 1211 (1249)
T ss_dssp CC-------CC--SCCCEEEECT-TSSCEEEES--SSEEEBCSSSCBCC
T ss_pred CCCCCCCCCCC--CEEEEEEECC-CCCEEEECC--CEEEEEECCCCCEE
T ss_conf 44442102567--4289999978-999899779--85999898889500
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=543.51 Aligned_cols=572 Identities=10% Similarity=0.099 Sum_probs=427.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECC
Q ss_conf 99866699999999998899958968999983689764210897352355879997189991799999289939999789
Q 001490 370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 449 (1068)
Q Consensus 370 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~ 449 (1068)
.+.+.+.+++|+|||++||+++ ++.|++|++.+++... .+.+|...|++++|+|+|+ ++++|+.|++|++||+.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~~ 89 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTT 89 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESS
T ss_pred CCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCE---EECCCCCCEEEEEECCCCC--EEEEEECCCCEEEEECC
T ss_conf 4068236976679999799679-9979994578724273---7658998659999999996--89999489978994898
Q ss_pred CCC--EEEEECCCCCCEEEEEEEECCCCCEEEEEECC----CCEEEEECCCCCCEEEECCCCCCEEEEEECCCCC-EEEE
Q ss_conf 996--24695268976799863101893199999858----9199995889981687248997189999814998-8999
Q 001490 450 TGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFS 522 (1068)
Q Consensus 450 ~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~-~l~~ 522 (1068)
+++ ....+.+|.+.|.+++|+| +++.|++++.+ +.|++|| .+.....+..|...+.+++|+|++. .+++
T Consensus 90 ~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s 165 (611)
T 1nr0_A 90 QTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIIS 165 (611)
T ss_dssp STTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred CCCCEEEEEECCCCCCEEEEEECC--CCCEEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEE
T ss_conf 984156676225578448999899--9997999989977366999963--899763254788983699988999829999
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECC-----CC
Q ss_conf 9608889404999947887055687423345687379999139998999978990999995898079999089-----99
Q 001490 523 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GG 597 (1068)
Q Consensus 523 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~ 597 (1068)
++. ++.|++||..+++....+.+|. ..|.+++|+|+++++++++.|+.|++||..+++.+..+... ++
T Consensus 166 ~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 166 GSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp EET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred EEC----CCEEEEEECCCCEEEEEECCCC---CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCC
T ss_conf 928----9809999799975766520025---716999997999989999899919998899982866513664323566
Q ss_pred CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCC---CEEEEEECCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 89975299915999999998899199998799964552133466---503547737864000012467056448998775
Q 001490 598 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD---NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 674 (1068)
Q Consensus 598 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1068)
...|.+++|+|++++|++++.|++|++||+.+++....+..+.. ....+. .++
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 294 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WTK 294 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------ECS
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEE------------------------ECC
T ss_conf 78789999979999999990898099996888701344047887664068999------------------------738
Q ss_pred CCCEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEECC
Q ss_conf 32201025652001012322786651000377334432899999558865999412760798764677657775410015
Q 001490 675 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV 754 (1068)
Q Consensus 675 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 754 (1068)
..+++++.|+.+++|+...... .....+|...|.+++|+|+++.+++++.|+.+++|++.....
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~------~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~---------- 358 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSI------DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------- 358 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEE------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----------
T ss_pred CEEEEEECCCCEEEEECCCCCC------CEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE----------
T ss_conf 8799995899689996889974------469837888889999918999899995898499997887925----------
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEECCCCEEEEE---ECCCCCCEEEEEEECCC
Q ss_conf 894237899993233057899999983099982499999999499199999467535777---55899986999980799
Q 001490 755 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHD 831 (1068)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d 831 (1068)
... + ..+|...+.+++|++++.++..+.|+.+++|+..+...... .........+++|+| +
T Consensus 359 ------------~~~--~-~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d 422 (611)
T 1nr0_A 359 ------------NRV--F-PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-D 422 (611)
T ss_dssp ------------EEC--S-SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-T
T ss_pred ------------EEE--C-CCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEEC-C
T ss_conf ------------632--1-66776507899987899699998489668954688543565212001489970799807-9
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCC
Q ss_conf 98999997898099999488503565014555869999928999999993898399998799824533333147986568
Q 001490 832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 911 (1068)
Q Consensus 832 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 911 (1068)
+..++++ .++.+++|+ .++ +..+. |...+.+++|+|||++|++++.|++|++|++.++.... ... .+|..
T Consensus 423 g~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~~- 492 (611)
T 1nr0_A 423 GDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHPA- 492 (611)
T ss_dssp SSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECSS-
T ss_pred CCEEEEE-ECCEEEEEE--CCC-EEEEE-CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEE---EEC-CCCCC-
T ss_conf 9699999-676399984--894-34640-68895499992899899996899739999945992224---101-57788-
Q ss_pred CCCCEEEEEEECCCEEEE-EECCEEEEEECCC-CEEEEE-ECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 998259999208999999-9579099998787-403323-0137776889999952899999998999299999589908
Q 001490 912 APSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 988 (1068)
Q Consensus 912 ~~~v~~~~~s~dg~~l~~-~~d~~i~iwd~~~-~~~~~~-~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~ 988 (1068)
.|.+++|||||++|++ +.|+++++|++.+ ++.... ...+|...|.+++|+|||++|++++.|++|++|++..+..
T Consensus 493 --~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 493 --EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp --CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred --CEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
T ss_conf --607999989999899994899899988577872232102640466425899899899799997997299997887555
Q ss_pred E--EEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf 9--896233223898766763416999889999889999289919999078
Q 001490 989 Q--CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus 989 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
. ..+. .|. .-.+.+++|+| ++. |++++.||+|++|+++
T Consensus 571 ~~~~~~~--------~h~-~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 571 HPIIIKG--------AHA-MSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CCEEETT--------SST-TSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred CCCHHHC--------CCC-CCCEEEEEECC-CCE-EEEECCCCCEEEEECC
T ss_conf 6326444--------676-56711899858-997-9995288778998444
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=540.91 Aligned_cols=555 Identities=22% Similarity=0.344 Sum_probs=459.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEE
Q ss_conf 77558987300000002588866787511244213588895698971898759999828674799956898611342013
Q 001490 273 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 352 (1068)
Q Consensus 273 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~ 352 (1068)
++.|+|++..+-.-.. .....+.+....++++|.+|++.|++++|+|||+ +|++++.|++|+|||. +++.+..
T Consensus 21 ~~a~spdg~~las~~~-d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~---- 93 (577)
T 2ymu_A 21 GVAFSPDGQTIASASD-DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT---- 93 (577)
T ss_dssp EEEECTTSSCEEEEET-TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE----
T ss_pred EEEECCCCCEEEEEEC-CCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEEC-CCCEEEE----
T ss_conf 9999899899999938-9989999799978999968989989999989999-9999969897999989-9978999----
Q ss_pred EEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCE
Q ss_conf 43134234212543314998666999999999988999589689999836897642108973523558799971899917
Q 001490 353 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 432 (1068)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~ 432 (1068)
+.+|...|.+++|+||+++|++++.|+.+++|+..... .....++...+.++.++|++.
T Consensus 94 ---------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~-- 152 (577)
T 2ymu_A 94 ---------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ-- 152 (577)
T ss_dssp ---------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--
T ss_pred ---------------EECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCE----EEECCCCCCCEEEEEEECCCC--
T ss_conf ---------------97899988999998999989998079833520235520----011047777435554203776--
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEE
Q ss_conf 99999289939999789996246952689767998631018931999998589199995889981687248997189999
Q 001490 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 512 (1068)
Q Consensus 433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 512 (1068)
.+++++.++.+++|+. ..........|...+..+.+.+ ++.++++++.|+.|++|+. +......+..+...+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~ 228 (577)
T 2ymu_A 153 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 228 (577)
T ss_dssp CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred CCEECCCCCCEECCCC-CEEEEEECCCCCCCEEEEEECC--CCCEEEEECCCCEEEEEEC-CCCEEEEEECCCCCEEEEE
T ss_conf 3200255531000000-0000000268776356654169--9778999859998999949-9968999946889889999
Q ss_pred ECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 81499889999608889404999947887055687423345687379999139998999978990999995898079999
Q 001490 513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 592 (1068)
Q Consensus 513 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 592 (1068)
|+|+++++++++. ++.|++|+. +++.+..+.+|. ..+.++.|+|+++.+++++.|+.+++|+. +++.+..+
T Consensus 229 ~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~ 299 (577)
T 2ymu_A 229 FSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTL 299 (577)
T ss_dssp ECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE
T ss_pred ECCCCCEEEEEEC----CCEEEEEEC-CCCEEEEEECCC---CCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEE
T ss_conf 9799999999918----998999959-997999980688---98799999689999999959997999948-99589997
Q ss_pred ECCCCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 08999899752999159999999988991999987999645521334665035477378640000124670564489987
Q 001490 593 DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE 672 (1068)
Q Consensus 593 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1068)
..+ ...+.+++|+|++..+++++.|+.+++|+..... +..+.
T Consensus 300 ~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~----------------------------------- 341 (577)
T 2ymu_A 300 TGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLT----------------------------------- 341 (577)
T ss_dssp CCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEEC-----------------------------------
T ss_pred ECC--CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE-EEEEE-----------------------------------
T ss_conf 068--8976999999999999999699959999699972-57874-----------------------------------
Q ss_pred CCCCCEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEE
Q ss_conf 75322010256520010123227866510003773344328999995588659994127607987646776577754100
Q 001490 673 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 752 (1068)
Q Consensus 673 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 752 (1068)
+|...+.+++|+|+++.+++++.+|.+++|+....
T Consensus 342 -----------------------------------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~---------- 376 (577)
T 2ymu_A 342 -----------------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---------- 376 (577)
T ss_dssp -----------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC----------
T ss_pred -----------------------------------CCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCC----------
T ss_conf -----------------------------------78897799999899999999969998999908997----------
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCC
Q ss_conf 158942378999932330578999999830999824999999994-9919999946753577755899986999980799
Q 001490 753 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 831 (1068)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 831 (1068)
.+.... +|...|.+++|+||++++++++ |+.|++|+. +++.+..+..|...|++++|+| +
T Consensus 377 -------------~~~~~~----~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d 437 (577)
T 2ymu_A 377 -------------LLQTLT----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-D 437 (577)
T ss_dssp -------------EEEEEE----CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-T
T ss_pred -------------EEEEEC----CCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECC-C
T ss_conf -------------899852----78897489999899999999949998999969-9978989628899757999989-9
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCC
Q ss_conf 98999997898099999488503565014555869999928999999993898399998799824533333147986568
Q 001490 832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 911 (1068)
Q Consensus 832 ~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 911 (1068)
+++|++++.|+.|++|+. +++.+..+.+|...|.+++|+||+++|++++.|+.|++|+... + .+....+|..
T Consensus 438 ~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~- 509 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS- 509 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS-
T ss_pred CCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCC-C-----EEEEEECCCC-
T ss_conf 999999939998999979-9988999727899778999969999999991989799993999-7-----8999867999-
Q ss_pred CCCCEEEEEEECCCEEEE-EECCEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 998259999208999999-95790999987874033230137776889999952899999998999299999
Q 001490 912 APSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982 (1068)
Q Consensus 912 ~~~v~~~~~s~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd 982 (1068)
.|.+++|+|||++|++ +.|+.|++||. +++++.. +.+|...|++++|+|||++|++++.|++|++||
T Consensus 510 --~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 510 --SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp --CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --CEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEE-ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf --9899999189999999989699999969-9978989-718888878999968999999990899999969
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=525.18 Aligned_cols=558 Identities=11% Similarity=0.159 Sum_probs=463.8
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCC----CCEEEEEEEEEECCCCCCCEEEEEECCCCCC-EEEEEEC
Q ss_conf 3588895698971898759999828674799956898----6113420134313423421254331499866-6999999
Q 001490 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 381 (1068)
Q Consensus 307 ~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~s 381 (1068)
..|.+.|.+++|+|||+ ++++++ ++.|.+||+.++ +.... +.+|... |.+++|+
T Consensus 15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCCCCCEEEEEECCCCC-EEEEEC-CCEEEEEECCCCCCCCCCCEE-------------------EECCCCCEEEEEEEC
T ss_conf 77658536899889999-799935-984999977788776514318-------------------805788449999979
Q ss_pred C--CCCEEEEEECCCEEEEEECCCCC-----CCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECC----CCEEEEECCC
Q ss_conf 9--99988999589689999836897-----64210897352355879997189991799999289----9399997899
Q 001490 382 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 450 (1068)
Q Consensus 382 p--dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d----~~i~iwd~~~ 450 (1068)
| ++++|++++.|+.|++||+.++. .......+..|...|.+++|+|+++ ++++++.+ +.|++|| .
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred CCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCC--EEEEECCCCCCCCEEEEEE--C
T ss_conf 67899889996489879997688876554455420001112566379999907999--8999316877755799997--8
Q ss_pred CCEEEEECCCCCCEEEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCEEEECCCCC---CEEEEEECCC-CCEEEEEEE
Q ss_conf 96246952689767998631018931-999998589199995889981687248997---1899998149-988999960
Q 001490 451 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 525 (1068)
Q Consensus 451 ~~~~~~~~~h~~~v~~i~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~i~~s~d-~~~l~~~~~ 525 (1068)
++.+..+.+|...|.+++|++ ++. .+++++.|+.|++||+........+..+.. .+.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCCCEEEECCCCCEEEEEECC--CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEC
T ss_conf 981031306774388999887--899689999579959999699961013202567777428999978977888999868
Q ss_pred CCCCCEEEEEEECCCCEEEEEE-E---CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCC--CC
Q ss_conf 8889404999947887055687-4---2334568737999913999899997899099999589807999908999--89
Q 001490 526 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 599 (1068)
Q Consensus 526 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 599 (1068)
++.|++||+.+++.+..+ . .|. ..+.++.|+ ++.++++++.|+.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCEEEEEECCCCCEEEEECCCCCCCC---CCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCC
T ss_conf ----98089998999978589525444567---755899981-8997999848994899978889278788478775457
Q ss_pred CCCEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEE
Q ss_conf 97529991599999999889919999879996455213346650354773786400001246705644899877532201
Q 001490 600 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 679 (1068)
Q Consensus 600 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 679 (1068)
.+..+.+. ++.++++++.++.+++|+...+..+..+.+|...+.++++ |+ +++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~ 352 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS 352 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred CEEEEEEC-CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEE-CC-------------------------CEE
T ss_conf 14699918-9976999978997899988899288999477787899995-67-------------------------489
Q ss_pred ECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEECCCCCCC
Q ss_conf 02565200101232278665100037733443289999955886599941276079876467765777541001589423
Q 001490 680 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 759 (1068)
Q Consensus 680 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 759 (1068)
++.|+.+++|+.. .+. ..|...|.++.| +++..+++++.++.+++|++....
T Consensus 353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~---------------- 404 (615)
T 1pgu_A 353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE---------------- 404 (615)
T ss_dssp EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred ECCCCEEEEEECH--------HHC---CCCCCCEEEEEE-CCCCEEEEEECCCCEEEEECCCCC----------------
T ss_conf 8799959998752--------415---755685179997-898679999589979998866676----------------
Q ss_pred CCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 78999932330578999999830999824999999994991999994675357775589998699998079998999997
Q 001490 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 839 (1068)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 839 (1068)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+++++|+ ++++++++
T Consensus 405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~ 463 (615)
T 1pgu_A 405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL 463 (615)
T ss_dssp -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred -----------------CCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECC-CCCCCEEEEEC---CCEEEEEE
T ss_conf -----------------3678469998289878999679826999446786655515-67872077883---88899965
Q ss_pred C-CCEEEEEECCCCEEE-EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCC-CCCCCCCCE
Q ss_conf 8-980999994885035-6501455586999992899999999389839999879982453333314798-656899825
Q 001490 840 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET 916 (1068)
Q Consensus 840 ~-dg~i~iwd~~~~~~~-~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~ 916 (1068)
. ||.|++|++.+++.. ..+.+|...|++++|+|++++|++++.|+.|++|++.+++. +....+ |.. .+.
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~~---~v~ 535 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRTS---KIN 535 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCSS---CEE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCC-----EEEEECCCCC---CEE
T ss_conf 68986999988885435333677657507999989999899817998599865777762-----4676047887---146
Q ss_pred EEEEEE----------CCCEEEE-EECCEEEEEECCCC-EEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 999920----------8999999-95790999987874-03323013777688999995289999999899929999958
Q 001490 917 HIQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984 (1068)
Q Consensus 917 ~~~~s~----------dg~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~ 984 (1068)
+++|+| ++++|++ +.|+.|++|++.++ +.+.. ..+|...|.+++|+||++ |++++.||.|++|++.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHH-HHCCCCCEEEEEECCCCC-EEEECCCCEEEEEEEE
T ss_conf 99976832345332468888999817971999977888540311-335943058999738997-2884599639999601
Q ss_pred C
Q ss_conf 9
Q 001490 985 N 985 (1068)
Q Consensus 985 ~ 985 (1068)
.
T Consensus 614 ~ 614 (615)
T 1pgu_A 614 L 614 (615)
T ss_dssp -
T ss_pred C
T ss_conf 5
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=509.93 Aligned_cols=633 Identities=11% Similarity=0.091 Sum_probs=448.2
Q ss_pred ECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf 21358889569897189875999982867479995689861134201343134234212543314998666999999999
Q 001490 305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 384 (1068)
Q Consensus 305 ~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg 384 (1068)
...+|.+.|++++|+|+++ ++|+|+.||+|+||+..+++... ...|...|.+++|+| |
T Consensus 12 ~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-g 69 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-G 69 (902)
T ss_dssp EEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-T
T ss_pred CCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEE--------------------ECCCCCCEEEEEECC-C
T ss_conf 2168899848999979999-89999297989999689947999--------------------868999779999908-9
Q ss_pred CEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEE----------
Q ss_conf 9889995896899998368976421089735235587999718999179999928993999978999624----------
Q 001490 385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------- 454 (1068)
Q Consensus 385 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---------- 454 (1068)
++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ ++++|+.|+.|++||+.++...
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred CEEEEEECCCEEEEEECCCCCEEE---EEC-CCCCEEEEEECCCCC--EEEEECCCCCEEEEECCCCCCCCCEECCCCCC
T ss_conf 889999895959999899996899---974-899879999879999--89999499929999999996265030432100
Q ss_pred -EEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCC------------------CCCEEEEEECC
Q ss_conf -69526897679986310189319999985891999958899816872489------------------97189999814
Q 001490 455 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSA 515 (1068)
Q Consensus 455 -~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~i~~s~ 515 (1068)
..+.+|.++|.+++|+|. ++..+++++.||.| +||++.......+..+ ...|.+++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred CCCCCCCCCCEEEEEECCC-CCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 0254457897389997669-99989999189849-998778965799833557767776544332345677768999859
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCEEEEE--EE---CCC----------CCCCCEEEEEEEC----CC-CEEEEEECC
Q ss_conf 9988999960888940499994788705568--74---233----------4568737999913----99-989999789
Q 001490 516 NGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFDT----AK-DQILAAGDD 575 (1068)
Q Consensus 516 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~i~~i~~~~----~~-~~l~~~s~d 575 (1068)
+|+++++++. |+.|++||+.+++.+.. +. .|. .+...|.+++|++ ++ ..+++++.+
T Consensus 222 dg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 222 NSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCEEEEEEC----CCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCC
T ss_conf 9999999989----993999987899688888501234578777678888555677457999734999887899968877
Q ss_pred -----CEEEEEECC------------------CCEEEEEEECCCCCCCCCEEEEEC----------CCCEEEEEECCCEE
Q ss_conf -----909999958------------------980799990899989975299915----------99999999889919
Q 001490 576 -----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRI 622 (1068)
Q Consensus 576 -----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i 622 (1068)
..+.+|++. ..+....+... +...+..+.+.+ +...+++++.|+.+
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECC-CCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 7788852899954789875554255654664174522787418-999547999977889886778785069999179848
Q ss_pred EEEECCCCCEEE-------ECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCEEECCCCCC
Q ss_conf 999879996455-------2133466503547737864000012467056448998775322010256520010123227
Q 001490 623 KILETPESNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 695 (1068)
Q Consensus 623 ~iwd~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 695 (1068)
++|++.++.... .+..|...++++++.+. ..++|+.....
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~---------------------------------~~~~w~~~~~~ 423 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV---------------------------------PNKLWLGALSA 423 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE---------------------------------EHHHHHHHHHT
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC---------------------------------CHHHHHHHHHC
T ss_conf 999789998556555689852235897248999974---------------------------------99999888860
Q ss_pred CCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 86651000377334432899999558865999412760798764677657775410015894237899993233057899
Q 001490 696 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 775 (1068)
Q Consensus 696 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1068)
.... ..+..+|...+.+++|+|+++.+++++.|+.|++|++....... ...+.. ........
T Consensus 424 ~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~------~l~~~~~~ 485 (902)
T 2oaj_A 424 AQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEV------NLSRTLNK 485 (902)
T ss_dssp TBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEE------EHHHHTTC
T ss_pred CCCC---CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCC---------CCEEEE------ECHHHCCC
T ss_conf 4699---97545785778753336667589996589838999787764567---------736775------01541377
Q ss_pred CCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCC---------------------------------------------
Q ss_conf 9999830999824999999994-991999994675---------------------------------------------
Q 001490 776 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF--------------------------------------------- 809 (1068)
Q Consensus 776 ~~~~~v~~i~~s~dg~~l~~~~-dg~i~iwd~~~~--------------------------------------------- 809 (1068)
+|...|.+++|+||+++||+++ |++|++|++.++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88876469996389996999945857999992486555754557786651134551346796543224236898877760
Q ss_pred EEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEE-----EEC-CCCCCEEEEEEC-----CCC---C
Q ss_conf 35777558999869999807999899999789809999948850356-----501-455586999992-----899---9
Q 001490 810 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---N 875 (1068)
Q Consensus 810 ~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~-----~~~-~h~~~V~~i~~s-----pdg---~ 875 (1068)
+++..+.+|.+.|++++||| || +||+|+.|++|++||+.+...+. .+. +|.+.|++++|+ ||| +
T Consensus 566 ~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred CEEEEEECCCCCEEEEEECC-CC-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCCCCCE
T ss_conf 14699986888677999648-76-89999589769999888983999702467264666613999999984178987633
Q ss_pred EEEEEECCCCEEEEEC---CCCCEEEEEEEECCCCCCCC--CCCCEEEE-EE----------------------ECCCEE
Q ss_conf 9999938983999987---99824533333147986568--99825999-92----------------------089999
Q 001490 876 ILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMTL--APSETHIQ-FH----------------------KDQTRF 927 (1068)
Q Consensus 876 ~l~s~s~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~--~~~v~~~~-~s----------------------~dg~~l 927 (1068)
+|++++.|++|++|++ .+++.. ..+.++... ...|..++ |+ +++.+|
T Consensus 644 ~l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 718 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL 718 (902)
T ss_dssp EEEEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE
T ss_pred EEEEEECCCCEEEEEEECCCCCCEE-----EEECCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEE
T ss_conf 8999956873999999558998689-----99667244078896479985866879736688789725577887773999
Q ss_pred EEEECCEEEEEECCCCEEEEEECCCCCCCEEEE---E------EECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 999579099998787403323013777688999---9------9528999999989992999995899089896233223
Q 001490 928 LLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 998 (1068)
Q Consensus 928 ~~~~d~~i~iwd~~~~~~~~~~~~~h~~~i~~l---~------fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~ 998 (1068)
++ .+..++||++.++++.+... .|...+.++ . |++++..|++.+.||.|++|++.+++.+..+......
T Consensus 719 ~~-~~~~ir~~~~~~~k~~~k~~-~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~ 796 (902)
T 2oaj_A 719 IT-GFDDIRLITLGKSKSTHKGF-KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI 796 (902)
T ss_dssp EE-CSSEEEEECTTCCCEEEEEC-SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC
T ss_pred EE-ECCCEEEEECCCCCCEEEEC-CCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEECCCHHHHHHCCCCCCC
T ss_conf 99-35405999675335123672-56201447778870135554467369999927995999978564778416588602
Q ss_pred CCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 898766763416999889999889999289919999078999
Q 001490 999 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus 999 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~ 1040 (1068)
.. -.....++.+ +|+.+.-.+ ...+.+..+-..+
T Consensus 797 ~~------~~~~~~~~~~-~G~~~~~~~-~~e~~~~~~~~~~ 830 (902)
T 2oaj_A 797 AA------KYITESSVLR-NGDIAIRVS-EFQASLFSTVKEQ 830 (902)
T ss_dssp CH------HHHTTCEECT-TSCEEEECS-SSEEEEEEEESCC
T ss_pred CC------CCCCCEEECC-CCCEEEEEC-HHHEEEEEEECCC
T ss_conf 44------6432028968-988999827-0264899997477
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=498.31 Aligned_cols=560 Identities=10% Similarity=0.108 Sum_probs=463.9
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC-CCCEEEECCCCCC-EEEEEECC--CCCCEEEEEEECCCCE
Q ss_conf 149986669999999999889995896899998368976-4210897352355-87999718--9991799999289939
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDDKTI 443 (1068)
Q Consensus 368 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~-V~~i~~s~--d~~~~~l~s~~~d~~i 443 (1068)
...|.+.|.+++|+||+++|++++ ++.|.+|++.++.. ......+.+|... |.+++|+| +++ ++++++.|+.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg~v 90 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESGKV 90 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC--EEEEEETTSEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCC--EEEEECCCCEE
T ss_conf 877658536899889999799935-984999977788776514318805788449999979678998--89996489879
Q ss_pred EEEECCCC--------CEEEEECCCCCCEEEEEEEECCCCCEEEEEECC----CCEEEEECCCCCCEEEECCCCCCEEEE
Q ss_conf 99978999--------624695268976799863101893199999858----919999588998168724899718999
Q 001490 444 KVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRM 511 (1068)
Q Consensus 444 ~iwd~~~~--------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~i 511 (1068)
++||+.++ ..+..+..|...|.+++|++ ++.++++++.+ +.|++|+ .......+..+...+.++
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEE
T ss_pred EEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEEC--CCCEEEEECCCCCCCCEEEEEE--CCCCCEEEECCCCCEEEE
T ss_conf 997688876554455420001112566379999907--9998999316877755799997--898103130677438899
Q ss_pred EECCCCC-EEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCC---CEEEEEEECC-CCEEEEEECCCEEEEEECCCC
Q ss_conf 9814998-8999960888940499994788705568742334568---7379999139-998999978990999995898
Q 001490 512 AYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDMNKV 586 (1068)
Q Consensus 512 ~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~l~~~s~dg~i~iwd~~~~ 586 (1068)
+|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .+.+++|+|+ ++++++++.|+.|++||+.++
T Consensus 167 ~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp EECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred EECCCCCCEEEEEEC----CCCEEEEECCCCCEEEEECCCC---CCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCC
T ss_conf 988789968999957----9959999699961013202567---777428999978977888999868980899989999
Q ss_pred EEEEEEECC--CCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCC----CCEEEEEECCCCCCCCCCCC
Q ss_conf 079999089--998997529991599999999889919999879996455213346----65035477378640000124
Q 001490 587 QLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGAGIA 660 (1068)
Q Consensus 587 ~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ 660 (1068)
+.+..+... .+...+.+++|+ ++.++++++.|+.|++|++.+++....+..+. ..+.++.+
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 306 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA------------ 306 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE------------
T ss_pred CEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEE------------
T ss_conf 78589525444567755899981-89979998489948999788892787884787754571469991------------
Q ss_pred CCEEEECCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 67056448998775322010256520010123227866510003773344328999995588659994127607987646
Q 001490 661 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 740 (1068)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 740 (1068)
+++..+++++.++.+++|+........ .+ .+|...|.++.| |+ +++++.+|.+++|++.
T Consensus 307 -----------~~~~~l~~~~~~g~i~~~d~~~~~~~~----~~--~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 307 -----------TGNGRIISLSLDGTLNFYELGHDEVLK----TI--SGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -----------EETTEEEEEETTSCEEEEETTEEEEEE----EE--CCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred -----------CCCCEEEEEECCCCEEEEECCCCCEEE----EE--ECCCCCEEEEEE-CC---CEEECCCCEEEEEECH
T ss_conf -----------899769999789978999888992889----99--477787899995-67---4898799959998752
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCC
Q ss_conf 776577754100158942378999932330578999999830999824999999994-9919999946753577755899
Q 001490 741 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS 819 (1068)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~ 819 (1068)
++. .+|...|.+++| +++..+++++ ++.+++|++.+++...
T Consensus 366 -------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~------ 407 (615)
T 1pgu_A 366 -------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS------ 407 (615)
T ss_dssp -------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS------
T ss_pred -------------------------HHC------CCCCCCEEEEEE-CCCCEEEEEECCCCEEEEECCCCCCCC------
T ss_conf -------------------------415------755685179997-898679999589979998866676367------
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEE
Q ss_conf 986999980799989999978980999994885035650145558699999289999999938-9839999879982453
Q 001490 820 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQT 898 (1068)
Q Consensus 820 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~ 898 (1068)
.+.+++++| ++.+++++ .++.+.+|+..+++.+..+. |...+.+++|+ ++++++++. |+.|++|++.+++...
T Consensus 408 -~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~ 481 (615)
T 1pgu_A 408 -QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF 481 (615)
T ss_dssp -CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE
T ss_pred -CCEEEEECC-CCCEEEEE-CCCCEEEEECCCCCEEEECC-CCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf -846999828-98789996-79826999446786655515-67872077883--88899965689869999888854353
Q ss_pred EEEEECCCCCCCCCCCCEEEEEEECCCEEEE-EECCEEEEEECCCCEEEEEECCCCCCCEEEEEEEC----------CCC
Q ss_conf 3333147986568998259999208999999-95790999987874033230137776889999952----------899
Q 001490 899 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC----------DCR 967 (1068)
Q Consensus 899 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~h~~~i~~l~fs~----------dg~ 967 (1068)
....++.. .+.+++|+|++++|++ +.|+.+++|++.+++.+..+...|...|++++|+| +++
T Consensus 482 ----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~ 554 (615)
T 1pgu_A 482 ----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554 (615)
T ss_dssp ----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred ----CCCCCCCC---CEEEEEECCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf ----33677657---50799998999989981799859986577776246760478871469997683234533246888
Q ss_pred EEEEEECCCCEEEEECCCC-CEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 9999989992999995899-0898962332238987667634169998899998899992899199990789
Q 001490 968 MVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus 968 ~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
+|++++.||.|++|++.++ +.+..+.. |. -.+.+++|+| ++. |++++.||.|++|++..
T Consensus 555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------h~--~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 555 LVATGSLDTNIFIYSVKRPMKIIKALNA--------HK--DGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEETTSCEEEEESSCTTCCEEETTS--------ST--TCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEECCCCCEEEEECCCCCEECHHHHC--------CC--CCEEEEEECC-CCC-EEEECCCCEEEEEEEEC
T ss_conf 8999817971999977888540311335--------94--3058999738-997-28845996399996015
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=495.72 Aligned_cols=600 Identities=9% Similarity=0.037 Sum_probs=430.7
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf 14998666999999999988999589689999836897642108973523558799971899917999992899399997
Q 001490 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447 (1068)
Q Consensus 368 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd 447 (1068)
..+|...|.+++|+|++++||+|+.||+|++|+..+.+... ...|...|.+++|+| ++ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEE----ECCCCCCEEEEEECC-CC--EEEEEECCCEEEEEE
T ss_conf 16889984899997999989999297989999689947999----868999779999908-98--899998959599998
Q ss_pred CCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE-----------EEECCCCCCEEEEEECCC
Q ss_conf 899962469526897679986310189319999985891999958899816-----------872489971899998149
Q 001490 448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 516 (1068)
Q Consensus 448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~i~~s~d 516 (1068)
+.+++++..+. |...|++++|+| ++.++++++.||.|++||+...... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCCEEEEEC-CCCCEEEEEECC--CCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 99996899974-899879999879--999899994999299999999962650304321000254457897389997669
Q ss_pred C-CEEEEEEECCCCCEEEEEEECCCCEEEEEEECC---------------CCCCCCEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 9-889999608889404999947887055687423---------------345687379999139998999978990999
Q 001490 517 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 580 (1068)
Q Consensus 517 ~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~i~~i~~~~~~~~l~~~s~dg~i~i 580 (1068)
+ ..+++++. ++.+ +||+.+++.+..+..+ ..+...|.+++|+|++.++++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEEC----CCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 9998999918----9849-9987789657998335577677765443323456777689998599999999989993999
Q ss_pred EECCCCEEEEEEEC-----CC-----------CCCCCCEEEEEC----CC-CEEEEEECC-----CEEEEEECCC-----
Q ss_conf 99589807999908-----99-----------989975299915----99-999999889-----9199998799-----
Q 001490 581 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 629 (1068)
Q Consensus 581 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iwd~~~----- 629 (1068)
||+.+++++..... +. +...|.+++|++ ++ .++++++.+ ..+.+|+...
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 98789968888850123457877767888855567745799973499988789996887777888528999547898755
Q ss_pred -------------CCEEEECC-CCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCEEECCCCCC
Q ss_conf -------------96455213-3466503547737864000012467056448998775322010256520010123227
Q 001490 630 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 695 (1068)
Q Consensus 630 -------------~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 695 (1068)
......+. .+...+..+.+.+.......+ ..+...+++.+.|+.+++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred CCCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCC------------CCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 5425565466417452278741899954799997788988677------------8785069999179848999789998
Q ss_pred CCCC-CEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCC
Q ss_conf 8665-100037733443289999955886599941276079876467765777541001589423789999323305789
Q 001490 696 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 774 (1068)
Q Consensus 696 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1068)
.... .........|...|.++++++... .+|+...... ..+ . ..+
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~~-----------------~~~--~--~~l-- 431 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSAA-----------------QNK--D--YLL-- 431 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHTT-----------------BCC--C--CSC--
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCH-----------HHHHHHHHCC-----------------CCC--C--CCC--
T ss_conf 55655568985223589724899997499-----------9998888604-----------------699--9--754--
Q ss_pred CCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEE--EEE----C-----CCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 99999830999824999999994-991999994675357--775----5-----89998699998079998999997898
Q 001490 775 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTI----M-----PPSPTATSLAFNPHDNNVIAIGMDDS 842 (1068)
Q Consensus 775 ~~~~~~v~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~~~--~~~----~-----~~~~~i~~l~~s~~d~~~lasg~~dg 842 (1068)
.+|...+..++|+||++++++++ |++|++||+.++... ..+ . +|...|++++|+| |+++||+|+.||
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECC-CCCEEEEEECCC
T ss_conf 5785778753336667589996589838999787764567736775015413778887646999638-999699994585
Q ss_pred EEEEEECCCCE---------------------------------------------EEEEECCCCCCEEEEEECCCCCEE
Q ss_conf 09999948850---------------------------------------------356501455586999992899999
Q 001490 843 TILIYNARSSE---------------------------------------------VISKLEGHSKRVTGLVFSDALNIL 877 (1068)
Q Consensus 843 ~i~iwd~~~~~---------------------------------------------~~~~~~~h~~~V~~i~~spdg~~l 877 (1068)
+|++|++.+++ ++..+.+|.+.|++++||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EE
T ss_conf 79999924865557545577866511345513467965432242368988777601469998688867799964876-89
Q ss_pred EEEECCCCEEEEECCCCCEEEEEEEECCC-CCCCCCCCCEEEEEE-----ECC---CEEEE-EECCEEEEEEC---CCCE
Q ss_conf 99938983999987998245333331479-865689982599992-----089---99999-95790999987---8740
Q 001490 878 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT 944 (1068)
Q Consensus 878 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s-----~dg---~~l~~-~~d~~i~iwd~---~~~~ 944 (1068)
|+++.|++|++||+.++.......+.... +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCC---CEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCC
T ss_conf 9995897699998889839997024672646666---1399999998417898763389999568739999995589986
Q ss_pred EEEEECCCC-----CCCEEEEE-EE----------------------CCCCEEEEEECCCCEEEEECCCCCEEEEECCCC
Q ss_conf 332301377-----76889999-95----------------------289999999899929999958990898962332
Q 001490 945 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 996 (1068)
Q Consensus 945 ~~~~~~~~h-----~~~i~~l~-fs----------------------~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 996 (1068)
+...+ .+| ..+|..++ |+ +++..|+ ++ +..|++|++.+++.......+
T Consensus 667 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~-~~-~~~ir~~~~~~~k~~~k~~~~- 742 (902)
T 2oaj_A 667 FDVQL-MDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI-TG-FDDIRLITLGKSKSTHKGFKY- 742 (902)
T ss_dssp EEEEE-EEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE-EC-SSEEEEECTTCCCEEEEECSS-
T ss_pred EEEEE-CCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEE-EE-CCCEEEEECCCCCCEEEECCC-
T ss_conf 89996-672440788964799858668797366887897255778877739999-93-540599967533512367256-
Q ss_pred CCCCCCCCCCCCCEEE---E------ECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 2389876676341699---9------8899998899992899199990789999876689
Q 001490 997 YLRPTTSCLHVYPHAI---A------AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1047 (1068)
Q Consensus 997 ~~~~~~~~~~~~~~~~---~------~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 1047 (1068)
......+ . +++ ++..|++++.||.|++|++++-++......
T Consensus 743 ---------~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 743 ---------PLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp ---------CEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ---------CEEEEEEEEEEECCCCCCCC-CCEEEEEEECCCCEEEEECCCHHHHHHCCC
T ss_conf ---------20144777887013555446-736999992799599997856477841658
Done!