Query 001491
Match_columns 1068
No_of_seqs 565 out of 4082
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0735 AAA+-type ATPase [Post 100.0 7E-121 2E-125 1037.0 62.0 854 1-1038 3-862 (952)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 9.3E-83 2E-87 716.5 41.1 487 550-1056 186-742 (802)
3 KOG0730 AAA+-type ATPase [Post 100.0 2.9E-73 6.3E-78 651.7 36.7 459 554-1053 184-658 (693)
4 KOG0736 Peroxisome assembly fa 100.0 1.5E-62 3.3E-67 565.9 37.8 444 591-1058 432-906 (953)
5 TIGR01243 CDC48 AAA family ATP 100.0 8.4E-58 1.8E-62 570.7 43.8 465 550-1037 174-648 (733)
6 COG0464 SpoVK ATPases of the A 100.0 5.2E-47 1.1E-51 455.6 36.3 420 579-1028 7-426 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 4.6E-41 1E-45 362.6 21.5 200 839-1038 146-349 (406)
8 KOG0741 AAA+-type ATPase [Post 100.0 7.4E-38 1.6E-42 348.4 27.4 441 547-1023 214-684 (744)
9 COG1222 RPT1 ATP-dependent 26S 100.0 5.6E-37 1.2E-41 331.1 19.1 247 550-824 147-393 (406)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 1.9E-36 4.2E-41 342.6 18.6 216 840-1056 186-420 (802)
11 KOG0727 26S proteasome regulat 100.0 8.3E-35 1.8E-39 298.1 16.0 204 839-1042 150-357 (408)
12 CHL00195 ycf46 Ycf46; Provisio 100.0 7.2E-33 1.6E-37 325.7 32.5 326 655-1028 81-408 (489)
13 TIGR02639 ClpA ATP-dependent C 100.0 1.3E-32 2.9E-37 343.1 31.8 452 552-1065 180-703 (731)
14 KOG0734 AAA+-type ATPase conta 100.0 2.1E-33 4.5E-38 313.3 15.9 196 840-1036 300-496 (752)
15 KOG0728 26S proteasome regulat 100.0 8E-33 1.7E-37 283.3 17.6 199 839-1037 142-344 (404)
16 KOG0730 AAA+-type ATPase [Post 100.0 6.4E-33 1.4E-37 319.8 18.7 247 550-826 430-677 (693)
17 PRK11034 clpA ATP-dependent Cl 100.0 6.2E-31 1.4E-35 323.3 32.0 447 553-1061 185-703 (758)
18 KOG0652 26S proteasome regulat 100.0 2.8E-31 6E-36 273.4 17.1 213 840-1052 167-397 (424)
19 KOG0738 AAA+-type ATPase [Post 100.0 2.3E-31 4.9E-36 288.6 15.2 214 840-1056 208-441 (491)
20 KOG0726 26S proteasome regulat 100.0 1.6E-31 3.4E-36 279.2 13.2 214 840-1053 181-412 (440)
21 KOG0729 26S proteasome regulat 100.0 1.7E-31 3.8E-36 275.6 13.1 197 839-1035 172-372 (435)
22 KOG0731 AAA+-type ATPase conta 100.0 6.2E-31 1.3E-35 312.8 18.8 210 839-1049 306-535 (774)
23 KOG0732 AAA+-type ATPase conta 100.0 3.1E-30 6.8E-35 313.6 20.6 448 550-1028 261-729 (1080)
24 KOG0734 AAA+-type ATPase conta 100.0 2.3E-30 5.1E-35 289.0 17.7 244 548-823 298-541 (752)
25 KOG0738 AAA+-type ATPase [Post 100.0 3.2E-30 7E-35 279.7 17.4 260 550-827 208-473 (491)
26 PLN00020 ribulose bisphosphate 100.0 6.5E-30 1.4E-34 281.4 18.4 181 873-1055 143-355 (413)
27 KOG0739 AAA+-type ATPase [Post 100.0 2.9E-30 6.2E-35 270.7 13.0 187 839-1028 128-315 (439)
28 PTZ00454 26S protease regulato 100.0 3E-29 6.5E-34 289.6 21.5 200 839-1038 140-343 (398)
29 TIGR03345 VI_ClpV1 type VI sec 100.0 2.7E-28 5.9E-33 305.8 30.0 455 552-1065 185-822 (852)
30 CHL00095 clpC Clp protease ATP 100.0 9.2E-28 2E-32 302.9 33.7 422 552-1028 177-735 (821)
31 KOG0652 26S proteasome regulat 100.0 4.1E-29 8.8E-34 257.5 15.9 246 550-823 167-412 (424)
32 TIGR03689 pup_AAA proteasome A 100.0 5.2E-29 1.1E-33 292.3 18.6 190 839-1028 177-381 (512)
33 COG1223 Predicted ATPase (AAA+ 100.0 4.4E-29 9.5E-34 257.8 14.8 183 840-1028 117-300 (368)
34 KOG0728 26S proteasome regulat 100.0 1.2E-28 2.7E-33 252.6 17.8 245 551-823 144-388 (404)
35 KOG0727 26S proteasome regulat 100.0 1.2E-28 2.5E-33 253.1 17.5 246 550-823 151-396 (408)
36 PF09262 PEX-1N: Peroxisome bi 100.0 4.7E-30 1E-34 225.5 6.0 77 94-170 1-80 (80)
37 KOG0736 Peroxisome assembly fa 100.0 2.1E-28 4.6E-33 284.1 20.9 261 550-827 668-936 (953)
38 COG0542 clpA ATP-binding subun 100.0 1.2E-27 2.7E-32 287.2 27.8 423 551-1028 167-708 (786)
39 KOG0731 AAA+-type ATPase conta 100.0 2E-28 4.3E-33 291.5 20.1 249 548-823 305-553 (774)
40 PTZ00454 26S protease regulato 100.0 6.3E-28 1.4E-32 278.6 21.3 248 550-825 141-388 (398)
41 KOG0739 AAA+-type ATPase [Post 100.0 1.3E-28 2.7E-33 258.4 14.0 227 550-797 129-355 (439)
42 COG0465 HflB ATP-dependent Zn 100.0 2.3E-28 5.1E-33 287.1 17.5 198 839-1037 145-346 (596)
43 CHL00195 ycf46 Ycf46; Provisio 100.0 8.9E-28 1.9E-32 282.7 22.3 244 550-828 224-468 (489)
44 PRK03992 proteasome-activating 100.0 7.4E-28 1.6E-32 279.5 20.3 200 839-1038 126-329 (389)
45 KOG0737 AAA+-type ATPase [Post 100.0 4.5E-28 9.8E-33 264.2 16.8 233 547-799 85-318 (386)
46 PTZ00361 26 proteosome regulat 100.0 6.9E-28 1.5E-32 279.6 17.6 200 839-1038 178-381 (438)
47 KOG0651 26S proteasome regulat 100.0 2.6E-28 5.6E-33 258.4 12.2 189 840-1028 128-319 (388)
48 KOG0726 26S proteasome regulat 100.0 2.5E-28 5.4E-33 255.4 11.3 246 550-824 181-427 (440)
49 TIGR03346 chaperone_ClpB ATP-d 100.0 3.3E-26 7.1E-31 289.5 32.7 457 552-1064 171-816 (852)
50 COG1223 Predicted ATPase (AAA+ 100.0 1.2E-27 2.6E-32 247.2 15.6 239 550-824 117-356 (368)
51 PRK03992 proteasome-activating 99.9 5.2E-27 1.1E-31 272.5 20.6 250 550-827 127-376 (389)
52 KOG0737 AAA+-type ATPase [Post 99.9 7.1E-28 1.5E-32 262.7 12.1 198 839-1038 87-288 (386)
53 KOG0741 AAA+-type ATPase [Post 99.9 4.3E-28 9.4E-33 270.8 9.7 193 846-1038 223-432 (744)
54 PRK10865 protein disaggregatio 99.9 1.4E-25 3.1E-30 282.4 31.1 456 552-1063 176-818 (857)
55 PTZ00361 26 proteosome regulat 99.9 2.1E-26 4.5E-31 267.4 20.0 246 550-823 179-424 (438)
56 TIGR01241 FtsH_fam ATP-depende 99.9 1.2E-26 2.6E-31 278.4 17.5 189 839-1028 50-241 (495)
57 KOG0729 26S proteasome regulat 99.9 1.7E-26 3.6E-31 238.8 14.1 245 550-824 173-419 (435)
58 COG0464 SpoVK ATPases of the A 99.9 9.2E-26 2E-30 271.6 22.0 248 550-826 238-486 (494)
59 TIGR01243 CDC48 AAA family ATP 99.9 8.5E-26 1.9E-30 283.0 22.2 258 551-827 450-714 (733)
60 COG0465 HflB ATP-dependent Zn 99.9 6.1E-26 1.3E-30 266.8 17.4 248 548-824 144-391 (596)
61 KOG0732 AAA+-type ATPase conta 99.9 3.9E-26 8.5E-31 278.1 16.1 216 839-1055 260-497 (1080)
62 KOG0735 AAA+-type ATPase [Post 99.9 1.4E-25 2.9E-30 258.4 19.0 228 551-798 664-891 (952)
63 TIGR01242 26Sp45 26S proteasom 99.9 2.6E-25 5.6E-30 257.3 20.0 199 839-1037 117-319 (364)
64 TIGR01241 FtsH_fam ATP-depende 99.9 2.1E-25 4.6E-30 267.7 19.9 247 550-825 51-297 (495)
65 CHL00176 ftsH cell division pr 99.9 6.1E-25 1.3E-29 266.4 20.7 245 550-823 179-423 (638)
66 TIGR03689 pup_AAA proteasome A 99.9 1.5E-24 3.2E-29 254.9 22.1 252 551-822 179-477 (512)
67 TIGR01242 26Sp45 26S proteasom 99.9 1.1E-24 2.4E-29 251.9 20.5 245 550-822 118-362 (364)
68 CHL00176 ftsH cell division pr 99.9 3.6E-25 7.8E-30 268.4 16.5 188 840-1028 179-369 (638)
69 CHL00206 ycf2 Ycf2; Provisiona 99.9 9.4E-25 2E-29 275.2 18.2 153 867-1025 1619-1817(2281)
70 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.4E-24 3E-29 273.7 17.8 214 581-825 1621-1879(2281)
71 KOG0740 AAA+-type ATPase [Post 99.9 2.3E-24 4.9E-29 244.2 13.9 186 840-1028 149-336 (428)
72 PRK10733 hflB ATP-dependent me 99.9 9.9E-24 2.1E-28 259.0 17.3 196 840-1036 148-347 (644)
73 KOG0651 26S proteasome regulat 99.9 4.9E-24 1.1E-28 226.1 10.2 244 551-822 129-372 (388)
74 KOG0740 AAA+-type ATPase [Post 99.9 2.8E-23 6.1E-28 235.3 16.7 257 550-826 149-407 (428)
75 PRK10733 hflB ATP-dependent me 99.9 6.3E-23 1.4E-27 251.9 20.7 249 548-825 146-394 (644)
76 PLN00020 ribulose bisphosphate 99.9 5.7E-22 1.2E-26 218.9 21.3 196 585-793 143-352 (413)
77 PF00004 AAA: ATPase family as 99.8 9.7E-20 2.1E-24 179.1 11.6 130 881-1011 1-132 (132)
78 CHL00181 cbbX CbbX; Provisiona 99.8 2.4E-19 5.1E-24 199.7 13.9 176 843-1028 22-212 (287)
79 TIGR02880 cbbX_cfxQ probable R 99.8 3.4E-19 7.5E-24 198.5 14.0 174 845-1028 23-211 (284)
80 KOG0744 AAA+-type ATPase [Post 99.8 1.4E-19 3E-24 193.2 9.3 188 841-1030 139-345 (423)
81 KOG0743 AAA+-type ATPase [Post 99.8 9.9E-19 2.1E-23 196.6 15.6 179 841-1027 198-385 (457)
82 TIGR02881 spore_V_K stage V sp 99.8 1E-18 2.2E-23 193.1 14.7 176 842-1028 4-194 (261)
83 TIGR02881 spore_V_K stage V sp 99.8 5.5E-18 1.2E-22 187.3 18.4 222 552-797 4-243 (261)
84 PF09263 PEX-2N: Peroxisome bi 99.7 2.1E-18 4.6E-23 147.2 7.6 80 3-90 4-87 (87)
85 TIGR02880 cbbX_cfxQ probable R 99.7 1.9E-17 4.2E-22 184.5 17.5 221 555-798 23-259 (284)
86 CHL00181 cbbX CbbX; Provisiona 99.7 2.3E-17 5E-22 183.8 17.2 222 555-799 24-261 (287)
87 PF05496 RuvB_N: Holliday junc 99.7 3.5E-16 7.6E-21 163.4 17.3 194 552-787 22-224 (233)
88 PF00004 AAA: ATPase family as 99.7 2.1E-16 4.6E-21 155.3 13.8 130 593-739 1-131 (132)
89 PF05496 RuvB_N: Holliday junc 99.7 6.1E-16 1.3E-20 161.7 15.5 160 840-1028 20-195 (233)
90 KOG0742 AAA+-type ATPase [Post 99.7 2.1E-16 4.6E-21 172.9 12.3 179 841-1029 352-532 (630)
91 KOG0743 AAA+-type ATPase [Post 99.7 5.7E-16 1.2E-20 174.6 15.3 208 551-783 198-411 (457)
92 KOG0742 AAA+-type ATPase [Post 99.7 2.2E-15 4.7E-20 165.1 18.3 186 588-794 382-594 (630)
93 KOG1051 Chaperone HSP104 and r 99.7 1.9E-14 4.2E-19 176.2 28.2 397 591-1028 209-787 (898)
94 TIGR00763 lon ATP-dependent pr 99.7 9E-16 2E-20 193.3 17.2 202 844-1064 320-545 (775)
95 KOG0744 AAA+-type ATPase [Post 99.6 2.6E-15 5.6E-20 160.8 13.6 244 551-822 139-413 (423)
96 COG2255 RuvB Holliday junction 99.6 1.8E-14 3.8E-19 152.9 18.5 200 552-793 24-232 (332)
97 PRK00080 ruvB Holliday junctio 99.6 2.7E-14 6E-19 163.2 21.4 218 552-822 23-249 (328)
98 TIGR00635 ruvB Holliday juncti 99.6 5.3E-14 1.1E-18 159.3 20.9 218 552-822 2-228 (305)
99 COG0466 Lon ATP-dependent Lon 99.6 2E-14 4.3E-19 168.9 17.0 203 843-1064 322-548 (782)
100 TIGR02639 ClpA ATP-dependent C 99.6 1.6E-14 3.4E-19 181.3 17.2 175 841-1037 179-371 (731)
101 KOG2004 Mitochondrial ATP-depe 99.6 5.3E-14 1.2E-18 164.0 16.8 193 842-1052 409-625 (906)
102 TIGR00763 lon ATP-dependent pr 99.5 9.9E-14 2.2E-18 174.9 20.0 213 555-797 321-559 (775)
103 COG2256 MGS1 ATPase related to 99.5 3.8E-14 8.2E-19 157.3 12.9 150 840-1026 20-177 (436)
104 PRK11034 clpA ATP-dependent Cl 99.5 5.3E-14 1.1E-18 174.3 15.4 182 841-1044 183-382 (758)
105 PRK14956 DNA polymerase III su 99.5 2.1E-13 4.5E-18 158.9 19.2 195 552-790 16-228 (484)
106 PRK07003 DNA polymerase III su 99.5 4.1E-13 8.9E-18 161.3 19.9 195 552-790 14-226 (830)
107 COG2255 RuvB Holliday junction 99.5 1.1E-13 2.3E-18 147.0 12.9 160 840-1028 22-197 (332)
108 PRK10787 DNA-binding ATP-depen 99.5 2E-13 4.3E-18 170.5 17.2 202 844-1065 322-547 (784)
109 PRK10865 protein disaggregatio 99.5 2.1E-13 4.5E-18 172.8 17.6 174 841-1037 175-367 (857)
110 PRK00080 ruvB Holliday junctio 99.5 1.5E-13 3.2E-18 157.2 14.5 160 840-1028 21-196 (328)
111 KOG0989 Replication factor C, 99.5 4.8E-13 1E-17 143.6 16.2 181 551-775 33-222 (346)
112 TIGR03345 VI_ClpV1 type VI sec 99.5 3.4E-13 7.4E-18 170.3 17.8 174 841-1037 184-376 (852)
113 PRK12323 DNA polymerase III su 99.5 5.4E-13 1.2E-17 158.6 18.0 195 552-790 14-231 (700)
114 PRK14960 DNA polymerase III su 99.5 9.9E-13 2.1E-17 156.8 18.9 195 552-790 13-225 (702)
115 PRK05342 clpX ATP-dependent pr 99.5 4.5E-13 9.7E-18 155.8 15.8 210 845-1059 72-364 (412)
116 TIGR00635 ruvB Holliday juncti 99.5 5.4E-13 1.2E-17 151.1 15.7 158 842-1028 2-175 (305)
117 PRK14962 DNA polymerase III su 99.5 1.6E-12 3.5E-17 153.9 19.3 192 552-788 12-222 (472)
118 COG0466 Lon ATP-dependent Lon 99.5 7.5E-13 1.6E-17 155.9 16.0 212 555-795 324-560 (782)
119 PRK14956 DNA polymerase III su 99.5 4.2E-13 9.1E-18 156.3 13.4 154 840-1027 14-195 (484)
120 PRK14964 DNA polymerase III su 99.4 2E-12 4.3E-17 152.4 18.8 195 552-790 11-223 (491)
121 PRK14949 DNA polymerase III su 99.4 2.6E-12 5.6E-17 157.4 20.2 194 552-789 14-225 (944)
122 TIGR00382 clpX endopeptidase C 99.4 9.3E-13 2E-17 152.2 15.3 178 845-1024 78-330 (413)
123 PRK14958 DNA polymerase III su 99.4 2.2E-12 4.7E-17 154.4 18.9 195 552-790 14-226 (509)
124 TIGR03346 chaperone_ClpB ATP-d 99.4 1.2E-12 2.6E-17 166.6 17.3 175 841-1038 170-363 (852)
125 PRK14962 DNA polymerase III su 99.4 9.4E-13 2E-17 155.9 15.0 154 840-1027 10-191 (472)
126 COG2256 MGS1 ATPase related to 99.4 2.7E-12 5.9E-17 142.7 17.5 144 591-776 49-205 (436)
127 PRK06893 DNA replication initi 99.4 2.3E-12 4.9E-17 139.7 16.5 166 591-789 40-208 (229)
128 TIGR02902 spore_lonB ATP-depen 99.4 1.9E-12 4.2E-17 156.2 17.6 229 551-821 62-330 (531)
129 PRK07994 DNA polymerase III su 99.4 4.1E-12 8.8E-17 153.9 20.2 195 551-789 13-225 (647)
130 PRK08691 DNA polymerase III su 99.4 4E-12 8.6E-17 153.1 19.9 195 552-790 14-226 (709)
131 TIGR02928 orc1/cdc6 family rep 99.4 6.1E-12 1.3E-16 146.2 21.0 226 555-823 16-274 (365)
132 PRK06645 DNA polymerase III su 99.4 4.5E-12 9.8E-17 150.6 20.0 196 552-791 19-236 (507)
133 PTZ00112 origin recognition co 99.4 9.4E-12 2E-16 149.7 21.4 188 554-774 755-969 (1164)
134 PRK05201 hslU ATP-dependent pr 99.4 1.8E-12 4E-17 147.6 14.7 201 845-1049 16-382 (443)
135 PRK00149 dnaA chromosomal repl 99.4 3.3E-12 7.1E-17 152.3 17.7 196 591-823 149-349 (450)
136 CHL00095 clpC Clp protease ATP 99.4 2.1E-12 4.5E-17 164.0 17.0 165 841-1028 176-357 (821)
137 PLN03025 replication factor C 99.4 4.8E-12 1E-16 144.2 18.1 189 552-786 11-202 (319)
138 PRK07003 DNA polymerase III su 99.4 1.3E-12 2.7E-17 157.2 13.6 155 840-1028 12-194 (830)
139 PRK14088 dnaA chromosomal repl 99.4 3.5E-12 7.5E-17 150.8 17.3 276 591-933 131-411 (440)
140 PRK14961 DNA polymerase III su 99.4 6.3E-12 1.4E-16 145.5 19.1 190 552-789 14-225 (363)
141 PRK12323 DNA polymerase III su 99.4 7.9E-13 1.7E-17 157.2 11.0 154 840-1027 12-198 (700)
142 TIGR00390 hslU ATP-dependent p 99.4 3.8E-12 8.1E-17 145.0 15.8 203 845-1049 13-380 (441)
143 PRK00411 cdc6 cell division co 99.4 1.6E-11 3.4E-16 144.2 21.6 226 554-823 30-282 (394)
144 PRK14086 dnaA chromosomal repl 99.4 1E-11 2.3E-16 148.4 20.1 198 591-823 315-515 (617)
145 PRK14960 DNA polymerase III su 99.4 1.8E-12 3.9E-17 154.6 12.8 155 840-1028 11-193 (702)
146 PF05673 DUF815: Protein of un 99.4 1.6E-11 3.5E-16 130.4 18.5 195 551-787 24-244 (249)
147 PRK14963 DNA polymerase III su 99.4 1.3E-11 2.8E-16 147.4 20.0 194 552-789 12-222 (504)
148 COG5271 MDN1 AAA ATPase contai 99.4 5.1E-12 1.1E-16 154.8 16.0 187 877-1067 1542-1750(4600)
149 KOG2004 Mitochondrial ATP-depe 99.4 7.2E-12 1.6E-16 146.5 16.5 189 554-772 411-624 (906)
150 PRK14951 DNA polymerase III su 99.4 1.1E-11 2.3E-16 150.1 18.0 195 552-790 14-231 (618)
151 TIGR00362 DnaA chromosomal rep 99.4 7E-12 1.5E-16 147.6 16.2 194 591-822 137-336 (405)
152 PRK14957 DNA polymerase III su 99.4 2E-11 4.3E-16 146.0 19.9 195 552-790 14-226 (546)
153 PRK08084 DNA replication initi 99.4 2E-11 4.3E-16 132.9 18.2 167 591-792 46-217 (235)
154 PRK05563 DNA polymerase III su 99.4 1.5E-11 3.3E-16 149.1 19.0 195 552-790 14-226 (559)
155 PRK05896 DNA polymerase III su 99.4 2.4E-11 5.1E-16 145.3 20.1 193 552-788 14-224 (605)
156 PRK04195 replication factor C 99.4 1.1E-11 2.4E-16 148.8 17.1 189 552-788 12-203 (482)
157 PRK14952 DNA polymerase III su 99.3 2.3E-11 5.1E-16 146.7 19.7 194 552-789 11-224 (584)
158 PRK14949 DNA polymerase III su 99.3 5.6E-12 1.2E-16 154.5 14.4 154 840-1027 12-193 (944)
159 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.5E-11 5.4E-16 131.2 18.1 167 590-792 38-209 (226)
160 PRK07764 DNA polymerase III su 99.3 2E-11 4.4E-16 152.5 19.6 194 552-789 13-226 (824)
161 PLN03025 replication factor C 99.3 6.2E-12 1.4E-16 143.2 13.9 154 840-1028 9-174 (319)
162 PRK12402 replication factor C 99.3 2.8E-11 6.1E-16 138.9 19.1 187 553-783 14-225 (337)
163 TIGR02397 dnaX_nterm DNA polym 99.3 2.2E-11 4.8E-16 141.0 18.2 190 552-789 12-223 (355)
164 PRK14961 DNA polymerase III su 99.3 1.3E-11 2.8E-16 142.9 16.2 155 840-1028 12-194 (363)
165 PRK07133 DNA polymerase III su 99.3 2.2E-11 4.8E-16 148.3 18.6 194 552-789 16-224 (725)
166 PRK13342 recombination factor 99.3 2.6E-11 5.7E-16 142.9 18.7 160 591-789 37-201 (413)
167 PRK14969 DNA polymerase III su 99.3 2.7E-11 5.7E-16 146.0 19.0 195 552-790 14-226 (527)
168 PRK08451 DNA polymerase III su 99.3 3.4E-11 7.4E-16 143.2 19.5 196 552-791 12-225 (535)
169 PRK06645 DNA polymerase III su 99.3 1.3E-11 2.8E-16 146.8 15.7 155 840-1028 17-203 (507)
170 PHA02544 44 clamp loader, smal 99.3 3.9E-11 8.5E-16 136.6 18.9 175 552-775 19-201 (316)
171 PRK13342 recombination factor 99.3 1.3E-11 2.8E-16 145.5 15.2 150 841-1028 9-167 (413)
172 PRK10787 DNA-binding ATP-depen 99.3 2E-11 4.4E-16 152.7 17.7 231 555-820 323-579 (784)
173 PRK14965 DNA polymerase III su 99.3 3.2E-11 7E-16 146.9 19.0 195 552-790 14-226 (576)
174 PRK07940 DNA polymerase III su 99.3 9.9E-12 2.1E-16 144.0 13.6 158 841-1022 2-186 (394)
175 PRK12422 chromosomal replicati 99.3 1.9E-11 4.1E-16 144.1 16.2 196 591-823 142-343 (445)
176 PRK14970 DNA polymerase III su 99.3 5.6E-11 1.2E-15 138.3 19.2 196 552-789 15-214 (367)
177 PRK05342 clpX ATP-dependent pr 99.3 1E-10 2.2E-15 136.3 21.3 232 556-796 73-382 (412)
178 PRK14959 DNA polymerase III su 99.3 6.2E-11 1.3E-15 142.5 19.9 192 552-788 14-224 (624)
179 PHA02544 44 clamp loader, smal 99.3 2.3E-11 5.1E-16 138.5 15.6 160 839-1028 16-176 (316)
180 PRK14958 DNA polymerase III su 99.3 7.3E-12 1.6E-16 149.9 11.9 155 840-1028 12-194 (509)
181 PRK08691 DNA polymerase III su 99.3 1.2E-11 2.6E-16 149.0 13.7 155 840-1028 12-194 (709)
182 PRK09111 DNA polymerase III su 99.3 6.1E-11 1.3E-15 143.9 19.9 194 552-789 22-238 (598)
183 PRK07994 DNA polymerase III su 99.3 2.1E-11 4.5E-16 147.8 15.5 155 840-1028 12-194 (647)
184 PRK04195 replication factor C 99.3 2.2E-11 4.8E-16 146.3 15.3 160 840-1028 10-176 (482)
185 PF00308 Bac_DnaA: Bacterial d 99.3 2.4E-11 5.2E-16 130.6 13.7 175 591-791 35-215 (219)
186 PRK06647 DNA polymerase III su 99.3 6.2E-11 1.3E-15 143.3 18.8 194 552-789 14-225 (563)
187 PRK05563 DNA polymerase III su 99.3 2.8E-11 6.1E-16 146.8 15.9 155 840-1028 12-194 (559)
188 PRK08903 DnaA regulatory inact 99.3 5.5E-11 1.2E-15 128.8 16.7 162 589-792 41-207 (227)
189 PRK07764 DNA polymerase III su 99.3 1.5E-11 3.2E-16 153.8 13.8 155 840-1028 11-195 (824)
190 PRK07940 DNA polymerase III su 99.3 6.7E-11 1.4E-15 137.2 18.2 195 552-784 3-214 (394)
191 PRK14964 DNA polymerase III su 99.3 1.6E-11 3.4E-16 144.9 13.0 155 840-1028 9-191 (491)
192 PRK08727 hypothetical protein; 99.3 7.2E-11 1.6E-15 128.3 17.1 163 591-790 42-210 (233)
193 PRK13341 recombination factor 99.3 5.7E-11 1.2E-15 146.9 18.3 161 591-790 53-223 (725)
194 PRK14963 DNA polymerase III su 99.3 3.7E-11 8.1E-16 143.5 15.9 155 840-1028 10-191 (504)
195 KOG0989 Replication factor C, 99.3 1.8E-11 3.9E-16 131.6 11.7 158 839-1028 31-204 (346)
196 PRK14953 DNA polymerase III su 99.3 4.2E-11 9.1E-16 142.6 16.0 194 552-789 14-225 (486)
197 PF05673 DUF815: Protein of un 99.3 1.1E-10 2.4E-15 124.1 17.3 180 840-1050 23-230 (249)
198 PRK14952 DNA polymerase III su 99.3 2.7E-11 5.8E-16 146.2 14.3 155 840-1028 9-193 (584)
199 PRK06305 DNA polymerase III su 99.3 1.4E-10 3E-15 137.4 19.8 193 552-788 15-226 (451)
200 PRK05642 DNA replication initi 99.3 8.8E-11 1.9E-15 127.7 16.6 166 591-792 46-216 (234)
201 PRK00440 rfc replication facto 99.3 1.3E-10 2.7E-15 132.5 18.4 211 552-824 15-227 (319)
202 TIGR02902 spore_lonB ATP-depen 99.3 2.3E-11 5E-16 147.0 13.0 159 840-1028 61-279 (531)
203 TIGR02640 gas_vesic_GvpN gas v 99.3 7.8E-11 1.7E-15 130.3 16.0 133 878-1025 21-198 (262)
204 PRK14957 DNA polymerase III su 99.2 4.1E-11 9E-16 143.3 14.0 155 840-1028 12-194 (546)
205 KOG2028 ATPase related to the 99.2 7.3E-11 1.6E-15 128.5 14.4 125 880-1028 164-297 (554)
206 PRK14951 DNA polymerase III su 99.2 3.7E-11 8E-16 145.5 13.4 155 840-1028 12-199 (618)
207 PRK05896 DNA polymerase III su 99.2 3.8E-11 8.3E-16 143.5 13.0 155 840-1028 12-194 (605)
208 PRK12402 replication factor C 99.2 8.9E-11 1.9E-15 134.8 15.6 160 840-1028 11-200 (337)
209 PRK14959 DNA polymerase III su 99.2 4.3E-11 9.3E-16 143.8 13.4 155 840-1028 12-194 (624)
210 COG2812 DnaX DNA polymerase II 99.2 5.1E-11 1.1E-15 140.0 13.4 198 552-791 14-227 (515)
211 TIGR00390 hslU ATP-dependent p 99.2 1.8E-10 3.9E-15 131.4 17.3 136 655-795 247-407 (441)
212 PRK07133 DNA polymerase III su 99.2 5.9E-11 1.3E-15 144.6 14.0 160 840-1028 14-193 (725)
213 PRK06620 hypothetical protein; 99.2 1.5E-10 3.3E-15 123.8 15.4 146 591-789 45-194 (214)
214 PRK14087 dnaA chromosomal repl 99.2 1.5E-10 3.2E-15 137.1 16.5 197 591-823 142-348 (450)
215 COG5271 MDN1 AAA ATPase contai 99.2 1.9E-10 4.2E-15 141.5 17.1 135 591-754 889-1047(4600)
216 PRK14948 DNA polymerase III su 99.2 3.1E-10 6.6E-15 138.8 19.3 192 552-787 14-225 (620)
217 TIGR02397 dnaX_nterm DNA polym 99.2 1.1E-10 2.4E-15 135.1 14.9 155 840-1028 10-192 (355)
218 PRK05201 hslU ATP-dependent pr 99.2 1.8E-10 3.9E-15 131.5 15.9 135 655-794 249-408 (443)
219 PRK14955 DNA polymerase III su 99.2 3.3E-10 7.1E-15 132.8 18.5 194 552-789 14-233 (397)
220 PRK00149 dnaA chromosomal repl 99.2 2.8E-11 6E-16 144.3 9.6 137 879-1028 149-296 (450)
221 TIGR02903 spore_lon_C ATP-depe 99.2 3.3E-10 7.1E-15 139.1 19.2 162 840-1028 150-369 (615)
222 PRK13341 recombination factor 99.2 7.5E-11 1.6E-15 145.9 13.4 151 840-1028 24-184 (725)
223 PRK14954 DNA polymerase III su 99.2 4.8E-10 1E-14 136.3 19.8 194 552-789 14-233 (620)
224 PRK14969 DNA polymerase III su 99.2 9.2E-11 2E-15 141.4 13.4 154 840-1027 12-193 (527)
225 PRK14965 DNA polymerase III su 99.2 1.1E-10 2.3E-15 142.4 14.2 155 840-1028 12-194 (576)
226 TIGR00362 DnaA chromosomal rep 99.2 4.4E-11 9.4E-16 140.9 10.5 137 879-1028 137-284 (405)
227 PRK06305 DNA polymerase III su 99.2 1.1E-10 2.4E-15 138.3 13.7 154 840-1027 13-195 (451)
228 PHA02244 ATPase-like protein 99.2 8.2E-10 1.8E-14 124.4 19.5 162 878-1066 119-304 (383)
229 PRK14948 DNA polymerase III su 99.2 2.1E-10 4.5E-15 140.2 16.1 154 840-1027 12-195 (620)
230 PRK06647 DNA polymerase III su 99.2 1.2E-10 2.5E-15 140.9 13.7 155 840-1028 12-194 (563)
231 TIGR00382 clpX endopeptidase C 99.2 3.7E-10 8.1E-15 130.8 17.1 198 590-796 116-388 (413)
232 COG1474 CDC6 Cdc6-related prot 99.2 8.3E-10 1.8E-14 126.9 19.8 219 556-820 19-262 (366)
233 TIGR02903 spore_lon_C ATP-depe 99.2 4.5E-10 9.8E-15 137.8 18.7 238 551-822 151-429 (615)
234 PRK14953 DNA polymerase III su 99.2 1.1E-10 2.4E-15 139.1 13.0 155 840-1028 12-194 (486)
235 PRK14950 DNA polymerase III su 99.2 5.9E-10 1.3E-14 136.6 19.7 194 552-789 14-226 (585)
236 TIGR03420 DnaA_homol_Hda DnaA 99.2 1.2E-10 2.6E-15 125.9 12.0 157 878-1063 38-202 (226)
237 PRK06893 DNA replication initi 99.2 6.8E-11 1.5E-15 128.2 9.9 148 879-1053 40-194 (229)
238 PRK14970 DNA polymerase III su 99.2 2.1E-10 4.5E-15 133.5 14.4 155 840-1028 13-183 (367)
239 COG0593 DnaA ATPase involved i 99.2 4.4E-10 9.6E-15 128.7 16.4 217 590-861 113-334 (408)
240 COG0542 clpA ATP-binding subun 99.2 3.9E-10 8.5E-15 137.2 16.8 178 841-1040 167-362 (786)
241 PRK08903 DnaA regulatory inact 99.2 3E-10 6.5E-15 123.1 14.0 151 878-1063 42-200 (227)
242 cd00009 AAA The AAA+ (ATPases 99.2 4.4E-10 9.5E-15 111.3 14.0 120 878-1010 19-150 (151)
243 PRK14971 DNA polymerase III su 99.1 1.2E-09 2.6E-14 133.7 19.5 194 552-789 15-227 (614)
244 TIGR01650 PD_CobS cobaltochela 99.1 1.4E-10 3.1E-15 129.4 10.4 136 878-1027 64-235 (327)
245 PF07724 AAA_2: AAA domain (Cd 99.1 8.5E-11 1.8E-15 121.2 7.8 115 876-992 1-132 (171)
246 PRK09111 DNA polymerase III su 99.1 3.3E-10 7.1E-15 137.6 13.9 161 840-1028 20-207 (598)
247 PRK09087 hypothetical protein; 99.1 4E-10 8.7E-15 121.6 13.1 172 591-822 45-221 (226)
248 COG2607 Predicted ATPase (AAA+ 99.1 2.9E-09 6.2E-14 111.1 18.5 196 551-788 57-277 (287)
249 PRK14088 dnaA chromosomal repl 99.1 1E-10 2.2E-15 138.3 9.1 138 879-1028 131-279 (440)
250 COG2812 DnaX DNA polymerase II 99.1 1.1E-10 2.3E-15 137.4 8.8 188 840-1063 12-221 (515)
251 PRK14086 dnaA chromosomal repl 99.1 2E-10 4.3E-15 137.6 10.2 136 880-1028 316-462 (617)
252 COG2607 Predicted ATPase (AAA+ 99.1 4.5E-09 9.8E-14 109.7 18.6 184 836-1050 52-262 (287)
253 PRK12422 chromosomal replicati 99.1 2.1E-10 4.6E-15 135.4 9.9 138 879-1028 142-287 (445)
254 PRK14954 DNA polymerase III su 99.1 9.3E-10 2E-14 133.9 15.6 159 840-1027 12-201 (620)
255 PRK14955 DNA polymerase III su 99.1 4.9E-10 1.1E-14 131.3 12.8 154 840-1027 12-201 (397)
256 TIGR02640 gas_vesic_GvpN gas v 99.1 1.2E-09 2.5E-14 121.0 14.9 156 561-754 5-198 (262)
257 PRK08451 DNA polymerase III su 99.1 7.8E-10 1.7E-14 131.8 13.8 155 840-1028 10-192 (535)
258 COG0714 MoxR-like ATPases [Gen 99.1 6.6E-10 1.4E-14 127.2 12.5 132 877-1025 42-203 (329)
259 COG1219 ClpX ATP-dependent pro 99.1 4.7E-10 1E-14 120.9 10.3 128 846-975 63-203 (408)
260 PF00308 Bac_DnaA: Bacterial d 99.1 5.9E-10 1.3E-14 119.9 11.2 159 879-1058 35-204 (219)
261 KOG0991 Replication factor C, 99.1 1.3E-09 2.9E-14 112.6 12.6 181 552-777 25-208 (333)
262 PRK14950 DNA polymerase III su 99.1 9.1E-10 2E-14 135.0 13.4 155 840-1028 12-195 (585)
263 KOG2028 ATPase related to the 99.1 3E-09 6.6E-14 116.1 15.7 185 591-822 163-367 (554)
264 PRK08084 DNA replication initi 99.0 6.5E-10 1.4E-14 121.0 10.6 149 879-1056 46-203 (235)
265 TIGR01650 PD_CobS cobaltochela 99.0 1.1E-09 2.3E-14 122.4 12.3 141 590-754 64-233 (327)
266 TIGR02974 phageshock_pspF psp 99.0 2.5E-09 5.5E-14 121.9 15.1 198 556-792 1-233 (329)
267 PRK08727 hypothetical protein; 99.0 1.2E-09 2.6E-14 118.8 11.4 128 879-1027 42-177 (233)
268 TIGR00678 holB DNA polymerase 99.0 3.3E-09 7.2E-14 111.5 14.4 154 589-776 13-184 (188)
269 PRK13407 bchI magnesium chelat 99.0 6.8E-10 1.5E-14 125.8 9.6 156 841-1025 5-216 (334)
270 COG1224 TIP49 DNA helicase TIP 99.0 6E-09 1.3E-13 114.1 16.3 130 655-823 291-432 (450)
271 PRK14971 DNA polymerase III su 99.0 3.1E-09 6.6E-14 130.1 15.9 154 841-1028 14-196 (614)
272 PF07728 AAA_5: AAA domain (dy 99.0 5.6E-10 1.2E-14 111.3 7.7 110 880-1003 1-139 (139)
273 PRK00440 rfc replication facto 99.0 2.4E-09 5.1E-14 122.0 13.7 154 840-1028 13-177 (319)
274 TIGR02928 orc1/cdc6 family rep 99.0 3.6E-09 7.8E-14 123.0 15.3 164 844-1026 15-213 (365)
275 PRK05642 DNA replication initi 99.0 1.8E-09 3.9E-14 117.4 11.1 148 879-1055 46-201 (234)
276 PRK11331 5-methylcytosine-spec 99.0 4.8E-09 1.1E-13 121.3 15.1 121 878-1011 194-357 (459)
277 PRK11608 pspF phage shock prot 99.0 5.3E-09 1.1E-13 119.4 15.3 200 553-791 5-239 (326)
278 TIGR03015 pepcterm_ATPase puta 99.0 3.8E-08 8.3E-13 109.3 21.7 195 591-822 44-265 (269)
279 cd00009 AAA The AAA+ (ATPases 99.0 7E-09 1.5E-13 102.7 13.8 128 589-739 18-150 (151)
280 TIGR00678 holB DNA polymerase 99.0 6E-09 1.3E-13 109.6 14.0 127 877-1024 13-167 (188)
281 smart00382 AAA ATPases associa 99.0 4.5E-09 9.8E-14 103.0 11.7 123 878-1012 2-147 (148)
282 COG5245 DYN1 Dynein, heavy cha 99.0 1.4E-09 3.1E-14 133.8 9.3 417 587-1045 1491-1992(3164)
283 PTZ00112 origin recognition co 99.0 6.3E-09 1.4E-13 125.9 14.7 164 845-1028 756-952 (1164)
284 KOG1969 DNA replication checkp 99.0 1.5E-08 3.2E-13 119.8 17.3 176 586-790 322-513 (877)
285 CHL00081 chlI Mg-protoporyphyr 98.9 3.2E-09 7E-14 120.5 10.8 159 841-1025 14-232 (350)
286 PRK00411 cdc6 cell division co 98.9 1.6E-08 3.5E-13 118.9 16.8 165 844-1027 30-222 (394)
287 TIGR01817 nifA Nif-specific re 98.9 1.1E-08 2.4E-13 124.8 15.8 202 551-791 193-427 (534)
288 PRK13407 bchI magnesium chelat 98.9 5.9E-09 1.3E-13 118.2 12.3 81 656-753 129-215 (334)
289 COG3604 FhlA Transcriptional r 98.9 5.6E-09 1.2E-13 119.3 11.9 210 550-792 219-456 (550)
290 COG1221 PspF Transcriptional r 98.9 5.2E-09 1.1E-13 119.6 11.5 208 550-794 74-311 (403)
291 PRK09112 DNA polymerase III su 98.9 4E-08 8.7E-13 112.7 18.6 188 552-784 21-240 (351)
292 KOG1969 DNA replication checkp 98.9 1.6E-08 3.5E-13 119.5 15.4 172 838-1028 265-484 (877)
293 PRK06620 hypothetical protein; 98.9 3.7E-09 8E-14 113.2 9.2 114 879-1027 45-162 (214)
294 COG2204 AtoC Response regulato 98.9 6.4E-09 1.4E-13 120.9 11.5 203 552-792 139-374 (464)
295 TIGR02030 BchI-ChlI magnesium 98.9 2E-08 4.2E-13 114.3 14.8 143 656-826 132-312 (337)
296 PRK04132 replication factor C 98.9 1.6E-08 3.6E-13 125.8 15.4 167 591-788 565-735 (846)
297 PRK09112 DNA polymerase III su 98.9 3.2E-08 7E-13 113.4 16.6 157 840-1024 19-212 (351)
298 PRK05564 DNA polymerase III su 98.9 5.3E-08 1.1E-12 110.8 18.0 180 552-776 2-183 (313)
299 CHL00081 chlI Mg-protoporyphyr 98.9 2.9E-08 6.4E-13 112.8 15.6 170 552-753 15-231 (350)
300 TIGR02030 BchI-ChlI magnesium 98.9 1E-08 2.2E-13 116.6 11.7 154 843-1025 3-219 (337)
301 PRK07471 DNA polymerase III su 98.9 3.9E-08 8.4E-13 113.4 16.7 157 840-1024 15-212 (365)
302 PF01078 Mg_chelatase: Magnesi 98.9 3.1E-09 6.8E-14 111.0 6.8 118 842-988 1-157 (206)
303 PRK13531 regulatory ATPase Rav 98.9 1.2E-08 2.6E-13 118.9 12.2 134 877-1024 38-193 (498)
304 PRK14087 dnaA chromosomal repl 98.8 8.7E-09 1.9E-13 122.2 10.9 136 879-1028 142-291 (450)
305 PRK15429 formate hydrogenlyase 98.8 3.9E-08 8.5E-13 123.4 17.3 208 551-792 373-609 (686)
306 PRK05564 DNA polymerase III su 98.8 2.4E-08 5.1E-13 113.7 13.8 151 842-1024 2-164 (313)
307 PRK07471 DNA polymerase III su 98.8 7.1E-08 1.5E-12 111.3 17.8 180 552-776 17-231 (365)
308 PRK13531 regulatory ATPase Rav 98.8 3.5E-08 7.7E-13 115.1 15.3 141 589-752 38-192 (498)
309 COG1224 TIP49 DNA helicase TIP 98.8 7.1E-08 1.5E-12 105.9 16.3 67 842-916 37-105 (450)
310 PF06068 TIP49: TIP49 C-termin 98.8 5.6E-08 1.2E-12 108.7 15.9 66 842-915 22-89 (398)
311 PRK05022 anaerobic nitric oxid 98.8 6.9E-08 1.5E-12 117.0 18.2 202 553-793 186-421 (509)
312 PRK10820 DNA-binding transcrip 98.8 4.6E-08 9.9E-13 118.5 16.6 204 551-791 201-436 (520)
313 COG3829 RocR Transcriptional r 98.8 1.5E-08 3.2E-13 117.6 11.4 207 550-790 241-477 (560)
314 PF07726 AAA_3: ATPase family 98.8 1.6E-09 3.4E-14 104.2 2.6 111 880-1003 1-129 (131)
315 COG3829 RocR Transcriptional r 98.8 5.1E-09 1.1E-13 121.3 7.2 198 841-1067 242-476 (560)
316 PRK11388 DNA-binding transcrip 98.8 4.3E-08 9.2E-13 122.3 16.0 201 552-791 323-553 (638)
317 KOG0745 Putative ATP-dependent 98.8 3E-08 6.4E-13 111.0 12.4 97 878-974 226-331 (564)
318 TIGR02329 propionate_PrpR prop 98.8 5.1E-08 1.1E-12 117.3 15.4 205 551-791 209-449 (526)
319 COG1219 ClpX ATP-dependent pro 98.8 7.2E-08 1.6E-12 104.4 14.6 198 591-795 98-370 (408)
320 KOG2035 Replication factor C, 98.8 8E-08 1.7E-12 102.2 14.4 160 591-777 35-222 (351)
321 PRK15424 propionate catabolism 98.8 9E-08 2E-12 115.1 16.8 207 552-791 217-464 (538)
322 PF07728 AAA_5: AAA domain (dy 98.8 2.1E-08 4.5E-13 100.0 9.1 117 592-732 1-139 (139)
323 PRK05707 DNA polymerase III su 98.8 4E-08 8.6E-13 111.8 12.2 129 877-1024 21-177 (328)
324 PRK05707 DNA polymerase III su 98.8 1.4E-07 3.1E-12 107.3 16.5 156 590-776 22-196 (328)
325 COG0470 HolB ATPase involved i 98.8 7.5E-08 1.6E-12 109.9 14.4 122 880-1019 26-175 (325)
326 TIGR02442 Cob-chelat-sub cobal 98.8 3.2E-08 6.9E-13 122.5 11.8 154 843-1025 3-214 (633)
327 PF07724 AAA_2: AAA domain (Cd 98.7 2.5E-08 5.3E-13 103.0 8.9 122 590-720 3-131 (171)
328 PHA02244 ATPase-like protein 98.7 1.3E-07 2.8E-12 106.9 15.3 128 591-745 120-265 (383)
329 PF06068 TIP49: TIP49 C-termin 98.7 2.6E-07 5.6E-12 103.4 17.4 94 656-777 279-384 (398)
330 smart00382 AAA ATPases associa 98.7 9.4E-08 2E-12 93.6 12.5 76 590-668 2-91 (148)
331 PRK08058 DNA polymerase III su 98.7 6.1E-08 1.3E-12 110.8 12.3 149 842-1023 3-180 (329)
332 PF00158 Sigma54_activat: Sigm 98.7 1.6E-07 3.5E-12 96.7 14.2 126 556-718 1-143 (168)
333 COG0593 DnaA ATPase involved i 98.7 3.9E-08 8.5E-13 112.9 10.6 139 877-1028 112-260 (408)
334 COG1220 HslU ATP-dependent pro 98.7 9.6E-08 2.1E-12 104.1 12.7 82 939-1022 252-346 (444)
335 KOG0745 Putative ATP-dependent 98.7 1.6E-07 3.5E-12 105.3 14.7 198 591-795 227-511 (564)
336 PRK07399 DNA polymerase III su 98.7 6E-08 1.3E-12 109.8 11.7 155 842-1025 2-195 (314)
337 COG0714 MoxR-like ATPases [Gen 98.7 1.6E-08 3.5E-13 115.9 6.8 140 590-752 43-201 (329)
338 PRK07399 DNA polymerase III su 98.7 2.6E-07 5.6E-12 104.6 16.4 187 553-785 3-222 (314)
339 COG2204 AtoC Response regulato 98.7 1.9E-08 4.2E-13 116.9 7.3 198 842-1068 139-372 (464)
340 PRK11331 5-methylcytosine-spec 98.7 1.3E-07 2.7E-12 109.8 13.7 134 590-740 194-357 (459)
341 PRK09087 hypothetical protein; 98.7 3.1E-08 6.7E-13 107.0 8.1 120 879-1028 45-169 (226)
342 PRK04132 replication factor C 98.7 7.4E-08 1.6E-12 120.1 12.3 129 877-1027 563-704 (846)
343 COG1221 PspF Transcriptional r 98.7 3.5E-08 7.5E-13 113.0 7.4 197 841-1067 75-306 (403)
344 TIGR02442 Cob-chelat-sub cobal 98.7 2.4E-07 5.2E-12 114.8 15.4 145 591-752 26-212 (633)
345 smart00350 MCM minichromosome 98.6 1.5E-07 3.2E-12 113.9 12.8 142 590-755 236-401 (509)
346 PF05621 TniB: Bacterial TniB 98.6 1.6E-06 3.4E-11 95.6 19.2 216 562-818 41-284 (302)
347 PRK06964 DNA polymerase III su 98.6 1.5E-07 3.1E-12 107.2 11.6 132 876-1023 19-202 (342)
348 COG0470 HolB ATPase involved i 98.6 2.3E-07 5E-12 105.9 13.3 128 592-748 26-175 (325)
349 PF12775 AAA_7: P-loop contain 98.6 8.8E-09 1.9E-13 114.2 1.4 150 590-756 33-195 (272)
350 PRK08058 DNA polymerase III su 98.6 3.1E-07 6.8E-12 105.0 14.0 136 589-752 27-180 (329)
351 smart00350 MCM minichromosome 98.6 1.4E-07 3E-12 114.1 11.4 165 845-1027 204-402 (509)
352 PF13177 DNA_pol3_delta2: DNA 98.6 2.1E-07 4.6E-12 95.3 11.1 134 848-1012 1-161 (162)
353 COG1474 CDC6 Cdc6-related prot 98.6 2.3E-07 5.1E-12 106.8 12.5 139 878-1028 42-206 (366)
354 PRK07993 DNA polymerase III su 98.6 1.1E-06 2.5E-11 100.2 18.0 157 589-777 23-198 (334)
355 TIGR02974 phageshock_pspF psp 98.6 7.9E-08 1.7E-12 109.7 8.5 172 878-1066 22-229 (329)
356 KOG1514 Origin recognition com 98.6 1.2E-06 2.6E-11 104.1 17.9 232 555-823 397-655 (767)
357 PF07726 AAA_3: ATPase family 98.6 8E-09 1.7E-13 99.4 -0.0 114 592-733 1-130 (131)
358 KOG0990 Replication factor C, 98.6 1.1E-07 2.4E-12 103.5 8.6 181 550-775 37-224 (360)
359 TIGR02031 BchD-ChlD magnesium 98.6 4.1E-07 8.9E-12 111.5 14.6 142 590-754 16-174 (589)
360 PRK06871 DNA polymerase III su 98.6 1.5E-06 3.2E-11 98.4 17.9 137 590-753 24-178 (325)
361 PF13177 DNA_pol3_delta2: DNA 98.6 3.9E-07 8.5E-12 93.4 12.1 125 589-740 18-160 (162)
362 PRK11608 pspF phage shock prot 98.6 1.8E-07 3.8E-12 106.9 10.5 196 843-1066 5-236 (326)
363 TIGR01817 nifA Nif-specific re 98.6 3.5E-07 7.7E-12 111.7 13.2 197 841-1067 193-425 (534)
364 COG1220 HslU ATP-dependent pro 98.6 7.9E-07 1.7E-11 97.1 14.1 113 656-773 251-381 (444)
365 TIGR02915 PEP_resp_reg putativ 98.6 3.9E-07 8.5E-12 109.0 13.2 200 554-791 139-371 (445)
366 PRK15424 propionate catabolism 98.6 1.3E-07 2.8E-12 113.7 8.8 197 841-1065 216-460 (538)
367 TIGR00602 rad24 checkpoint pro 98.6 1.2E-06 2.6E-11 106.9 17.0 202 551-788 81-324 (637)
368 PRK15429 formate hydrogenlyase 98.6 3.3E-07 7.2E-12 115.2 12.6 194 842-1067 374-606 (686)
369 TIGR02031 BchD-ChlD magnesium 98.5 1.1E-07 2.4E-12 116.4 8.1 134 878-1027 16-176 (589)
370 KOG3595 Dyneins, heavy chain [ 98.5 6.6E-07 1.4E-11 119.4 15.8 329 591-945 128-531 (1395)
371 smart00763 AAA_PrkA PrkA AAA d 98.5 2.1E-06 4.6E-11 97.3 17.3 63 842-911 48-118 (361)
372 PRK08769 DNA polymerase III su 98.5 2.1E-06 4.6E-11 97.0 17.3 156 590-778 26-203 (319)
373 PF00158 Sigma54_activat: Sigm 98.5 2.2E-07 4.8E-12 95.6 8.5 97 879-989 23-143 (168)
374 PRK10923 glnG nitrogen regulat 98.5 1.1E-06 2.4E-11 105.8 15.5 201 553-792 137-371 (469)
375 KOG0991 Replication factor C, 98.5 3E-07 6.6E-12 95.4 8.5 131 840-999 23-162 (333)
376 PRK06871 DNA polymerase III su 98.5 7.4E-07 1.6E-11 100.8 12.5 127 877-1023 23-177 (325)
377 PRK11388 DNA-binding transcrip 98.5 1.9E-07 4.1E-12 116.5 8.2 196 842-1067 323-551 (638)
378 TIGR00602 rad24 checkpoint pro 98.5 1.1E-06 2.5E-11 107.1 14.4 169 840-1028 80-290 (637)
379 TIGR02655 circ_KaiC circadian 98.5 9.1E-07 2E-11 106.5 13.5 78 873-950 258-366 (484)
380 PRK06964 DNA polymerase III su 98.5 1.1E-06 2.4E-11 100.2 13.3 138 588-752 19-202 (342)
381 PRK10820 DNA-binding transcrip 98.5 2.8E-07 6.1E-12 111.7 9.2 196 841-1066 201-433 (520)
382 TIGR02329 propionate_PrpR prop 98.5 1.4E-07 3E-12 113.6 6.3 160 841-1028 209-404 (526)
383 PRK08116 hypothetical protein; 98.5 5.5E-07 1.2E-11 99.9 10.5 129 879-1023 115-258 (268)
384 PRK05022 anaerobic nitric oxid 98.5 4.8E-07 1E-11 109.7 10.5 192 843-1066 186-416 (509)
385 KOG1942 DNA helicase, TBP-inte 98.5 2.7E-06 5.8E-11 91.0 14.6 96 655-778 296-404 (456)
386 TIGR00368 Mg chelatase-related 98.4 5.2E-07 1.1E-11 107.9 9.7 144 842-1016 190-395 (499)
387 PRK08699 DNA polymerase III su 98.4 2.6E-06 5.6E-11 97.0 14.6 138 588-752 19-183 (325)
388 COG3604 FhlA Transcriptional r 98.4 9.9E-08 2.1E-12 109.4 3.1 197 841-1066 220-452 (550)
389 smart00763 AAA_PrkA PrkA AAA d 98.4 6.4E-06 1.4E-10 93.5 16.9 53 555-616 52-104 (361)
390 PRK07993 DNA polymerase III su 98.4 1.3E-06 2.8E-11 99.8 11.3 128 876-1022 22-177 (334)
391 PRK11361 acetoacetate metaboli 98.4 3E-06 6.4E-11 101.8 15.0 197 555-791 144-375 (457)
392 TIGR01818 ntrC nitrogen regula 98.4 2.7E-06 5.9E-11 102.3 14.3 199 555-792 135-367 (463)
393 PRK06090 DNA polymerase III su 98.4 3.9E-06 8.5E-11 94.7 14.3 129 876-1023 23-178 (319)
394 PF01078 Mg_chelatase: Magnesi 98.4 2.8E-07 6.1E-12 96.5 4.8 46 553-615 2-47 (206)
395 PRK08769 DNA polymerase III su 98.4 3E-06 6.6E-11 95.7 13.2 131 877-1023 25-183 (319)
396 KOG1051 Chaperone HSP104 and r 98.4 9.1E-06 2E-10 101.1 18.3 139 554-718 562-710 (898)
397 KOG2227 Pre-initiation complex 98.4 5.1E-06 1.1E-10 94.7 14.6 196 555-784 151-368 (529)
398 PRK06090 DNA polymerase III su 98.4 7.3E-06 1.6E-10 92.6 15.8 137 589-752 24-178 (319)
399 PF01637 Arch_ATPase: Archaeal 98.3 1.3E-06 2.8E-11 94.2 9.3 183 557-777 2-228 (234)
400 PRK15115 response regulator Gl 98.3 3.6E-06 7.7E-11 100.7 13.9 197 555-791 135-366 (444)
401 PRK08181 transposase; Validate 98.3 1E-06 2.2E-11 97.4 8.3 100 878-990 106-209 (269)
402 PF13173 AAA_14: AAA domain 98.3 1.9E-06 4.1E-11 84.7 9.4 120 591-745 3-126 (128)
403 PRK07952 DNA replication prote 98.3 1.3E-06 2.7E-11 95.2 8.9 100 879-990 100-205 (244)
404 PRK08699 DNA polymerase III su 98.3 1.9E-06 4.2E-11 98.0 10.6 131 876-1022 19-182 (325)
405 PRK09302 circadian clock prote 98.3 1.9E-05 4.2E-10 96.0 19.8 109 873-988 268-407 (509)
406 PRK06526 transposase; Provisio 98.3 8.3E-07 1.8E-11 97.5 7.1 100 878-990 98-201 (254)
407 PRK12377 putative replication 98.3 1.4E-06 3.1E-11 95.1 8.9 100 879-990 102-206 (248)
408 KOG2680 DNA helicase TIP49, TB 98.3 6.6E-06 1.4E-10 88.4 13.4 131 655-824 288-430 (454)
409 KOG0990 Replication factor C, 98.3 2.5E-06 5.4E-11 93.1 10.2 158 839-1028 36-206 (360)
410 PRK09183 transposase/IS protei 98.3 1.6E-06 3.5E-11 95.7 9.1 102 877-990 101-206 (259)
411 PF14532 Sigma54_activ_2: Sigm 98.3 1.5E-06 3.3E-11 86.6 8.1 81 558-668 2-82 (138)
412 COG1239 ChlI Mg-chelatase subu 98.3 3.1E-06 6.6E-11 96.3 11.3 159 842-1027 15-234 (423)
413 COG1123 ATPase components of v 98.3 2.1E-05 4.5E-10 93.2 18.6 56 927-992 437-492 (539)
414 PRK06835 DNA replication prote 98.3 2.6E-06 5.6E-11 96.9 10.7 100 879-990 184-289 (329)
415 TIGR00764 lon_rel lon-related 98.3 6.9E-06 1.5E-10 101.0 15.2 101 709-822 268-390 (608)
416 COG1484 DnaC DNA replication p 98.3 1.7E-06 3.6E-11 95.2 8.8 102 877-990 104-209 (254)
417 TIGR00764 lon_rel lon-related 98.3 1E-05 2.2E-10 99.6 16.3 51 840-905 14-64 (608)
418 COG0606 Predicted ATPase with 98.3 3.3E-07 7.2E-12 105.3 3.2 148 841-1017 176-384 (490)
419 PRK09862 putative ATP-dependen 98.3 1.9E-06 4E-11 102.8 8.8 123 877-1015 209-391 (506)
420 PRK08939 primosomal protein Dn 98.3 2.4E-06 5.2E-11 96.4 9.2 102 878-990 156-261 (306)
421 PF13173 AAA_14: AAA domain 98.3 5.2E-06 1.1E-10 81.6 10.4 120 879-1016 3-126 (128)
422 PTZ00111 DNA replication licen 98.3 3.5E-06 7.6E-11 104.8 11.3 165 845-1026 451-658 (915)
423 PF05729 NACHT: NACHT domain 98.3 5.8E-06 1.3E-10 84.2 11.2 146 592-756 2-165 (166)
424 KOG1942 DNA helicase, TBP-inte 98.2 1.5E-05 3.2E-10 85.6 13.5 75 937-1028 296-383 (456)
425 PF01695 IstB_IS21: IstB-like 98.2 1.1E-06 2.4E-11 91.4 5.0 100 878-990 47-150 (178)
426 TIGR02915 PEP_resp_reg putativ 98.2 1.6E-06 3.5E-11 103.7 6.9 172 878-1067 162-369 (445)
427 PRK06921 hypothetical protein; 98.2 5.4E-06 1.2E-10 91.9 10.4 68 878-948 117-188 (266)
428 COG1239 ChlI Mg-chelatase subu 98.2 1.3E-05 2.9E-10 91.2 12.3 84 656-756 145-234 (423)
429 PF03152 UFD1: Ubiquitin fusio 98.2 2.4E-05 5.3E-10 80.1 13.0 150 13-170 25-175 (176)
430 PRK08116 hypothetical protein; 98.2 7.1E-06 1.5E-10 91.1 9.9 72 590-666 114-189 (268)
431 TIGR00368 Mg chelatase-related 98.1 7.3E-06 1.6E-10 98.2 10.4 47 552-615 190-236 (499)
432 PF03215 Rad17: Rad17 cell cyc 98.1 7.8E-05 1.7E-09 89.7 18.1 201 553-793 18-269 (519)
433 PRK10923 glnG nitrogen regulat 98.1 1.4E-05 3E-10 96.4 11.9 172 878-1067 161-368 (469)
434 PF14532 Sigma54_activ_2: Sigm 98.1 4.6E-06 1E-10 83.1 5.8 85 878-988 21-108 (138)
435 PRK05917 DNA polymerase III su 98.1 4.5E-05 9.8E-10 84.7 13.6 126 589-741 18-154 (290)
436 PRK10365 transcriptional regul 98.1 8.4E-05 1.8E-09 88.8 17.1 196 556-791 141-371 (441)
437 TIGR03015 pepcterm_ATPase puta 98.1 0.00013 2.7E-09 81.2 17.3 135 879-1028 44-208 (269)
438 PF13401 AAA_22: AAA domain; P 98.0 2.8E-05 6.1E-10 76.2 10.5 79 590-668 4-100 (131)
439 PRK11361 acetoacetate metaboli 98.0 1.5E-05 3.2E-10 95.8 10.0 171 878-1066 166-372 (457)
440 PRK15115 response regulator Gl 98.0 3E-06 6.5E-11 101.4 4.0 170 879-1066 158-363 (444)
441 PRK12377 putative replication 98.0 2.6E-05 5.7E-10 85.2 11.0 72 591-667 102-175 (248)
442 PF14516 AAA_35: AAA-like doma 98.0 0.00038 8.2E-09 79.9 20.9 169 589-777 30-233 (331)
443 PRK09862 putative ATP-dependen 98.0 8.4E-05 1.8E-09 88.8 15.8 135 589-744 209-391 (506)
444 COG3283 TyrR Transcriptional r 98.0 5.8E-05 1.3E-09 83.3 12.7 207 551-792 201-432 (511)
445 PTZ00111 DNA replication licen 98.0 1.4E-05 3E-10 99.7 8.8 146 589-755 491-658 (915)
446 PRK08181 transposase; Validate 98.0 2.9E-05 6.2E-10 85.9 10.5 74 590-668 106-180 (269)
447 TIGR01818 ntrC nitrogen regula 98.0 1.4E-05 3.1E-10 96.1 8.7 172 879-1067 158-364 (463)
448 PF12774 AAA_6: Hydrolytic ATP 98.0 0.00012 2.7E-09 79.2 14.7 133 591-750 33-176 (231)
449 PF03215 Rad17: Rad17 cell cyc 98.0 6.2E-05 1.3E-09 90.5 13.7 142 878-1028 45-229 (519)
450 PF01637 Arch_ATPase: Archaeal 98.0 2.6E-05 5.7E-10 84.0 9.3 142 878-1028 20-207 (234)
451 PRK06526 transposase; Provisio 98.0 1.3E-05 2.8E-10 88.1 6.9 73 590-667 98-171 (254)
452 PRK07952 DNA replication prote 98.0 5E-05 1.1E-09 82.8 11.3 72 591-667 100-174 (244)
453 KOG2035 Replication factor C, 97.9 0.00013 2.9E-09 78.2 13.9 153 842-1028 11-202 (351)
454 PF13401 AAA_22: AAA domain; P 97.9 2.9E-05 6.3E-10 76.1 8.4 87 877-973 3-113 (131)
455 KOG2680 DNA helicase TIP49, TB 97.9 0.00013 2.9E-09 78.7 13.6 74 938-1028 289-374 (454)
456 PF00931 NB-ARC: NB-ARC domain 97.9 9.5E-05 2E-09 82.9 13.3 159 590-783 19-201 (287)
457 cd01120 RecA-like_NTPases RecA 97.9 3.2E-05 7E-10 78.2 8.2 112 881-993 2-140 (165)
458 PRK06835 DNA replication prote 97.9 5.9E-05 1.3E-09 85.9 10.9 72 591-667 184-258 (329)
459 TIGR02237 recomb_radB DNA repa 97.9 7.8E-05 1.7E-09 79.7 11.0 81 586-669 8-111 (209)
460 COG1618 Predicted nucleotide k 97.9 9.4E-05 2E-09 73.6 10.4 133 879-1028 6-175 (179)
461 PRK13765 ATP-dependent proteas 97.9 0.0001 2.2E-09 90.7 13.0 49 840-903 27-75 (637)
462 PRK10365 transcriptional regul 97.9 1.6E-05 3.4E-10 95.0 6.0 171 878-1066 162-368 (441)
463 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00016 3.5E-09 78.3 13.0 125 879-1021 33-176 (231)
464 PRK06921 hypothetical protein; 97.8 4.8E-05 1E-09 84.3 8.7 72 590-666 117-188 (266)
465 COG0606 Predicted ATPase with 97.8 2.2E-05 4.8E-10 90.6 6.0 49 550-615 175-223 (490)
466 KOG1970 Checkpoint RAD17-RFC c 97.8 0.00096 2.1E-08 78.0 19.2 192 559-789 87-317 (634)
467 PRK09183 transposase/IS protei 97.8 5.6E-05 1.2E-09 83.6 9.0 76 588-667 100-176 (259)
468 COG0488 Uup ATPase components 97.8 0.00072 1.6E-08 81.6 19.0 31 587-617 26-56 (530)
469 PRK05917 DNA polymerase III su 97.8 9.2E-05 2E-09 82.3 10.4 117 877-1012 18-154 (290)
470 PF12775 AAA_7: P-loop contain 97.8 4.2E-05 9.1E-10 85.0 7.8 137 878-1029 33-197 (272)
471 PRK07132 DNA polymerase III su 97.8 0.00046 1E-08 77.6 15.6 125 878-1023 18-160 (299)
472 PF01695 IstB_IS21: IstB-like 97.8 4.2E-05 9.2E-10 79.6 6.7 73 589-666 46-119 (178)
473 COG3267 ExeA Type II secretory 97.8 0.00081 1.8E-08 72.1 16.2 177 591-794 52-255 (269)
474 PRK13406 bchD magnesium chelat 97.8 0.00018 3.9E-09 87.8 13.0 202 591-822 26-249 (584)
475 KOG2170 ATPase of the AAA+ sup 97.8 0.00051 1.1E-08 74.9 14.7 138 556-718 84-224 (344)
476 cd01120 RecA-like_NTPases RecA 97.7 0.00017 3.6E-09 73.0 10.0 74 593-669 2-99 (165)
477 COG3284 AcoR Transcriptional a 97.7 2.1E-05 4.6E-10 93.4 3.6 170 878-1068 336-538 (606)
478 COG1484 DnaC DNA replication p 97.7 0.00014 3.1E-09 80.0 9.4 75 589-667 104-179 (254)
479 KOG1514 Origin recognition com 97.7 0.00017 3.7E-09 86.2 10.5 140 879-1028 423-592 (767)
480 PRK08939 primosomal protein Dn 97.7 0.00015 3.3E-09 81.9 9.8 74 589-667 155-229 (306)
481 PRK06851 hypothetical protein; 97.7 0.00057 1.2E-08 78.5 14.1 34 879-912 215-251 (367)
482 PHA00729 NTP-binding motif con 97.7 0.00013 2.8E-09 78.1 8.3 24 880-903 19-42 (226)
483 COG1241 MCM2 Predicted ATPase 97.6 0.00011 2.4E-09 89.7 8.6 142 591-756 320-485 (682)
484 KOG0478 DNA replication licens 97.6 0.0002 4.4E-09 85.1 10.2 169 555-755 430-627 (804)
485 TIGR02237 recomb_radB DNA repa 97.6 0.00014 3E-09 77.7 8.3 117 873-989 7-149 (209)
486 PRK07132 DNA polymerase III su 97.6 0.00092 2E-08 75.2 14.5 151 591-775 19-177 (299)
487 KOG1970 Checkpoint RAD17-RFC c 97.6 0.00081 1.8E-08 78.6 14.1 142 879-1028 111-283 (634)
488 PRK05818 DNA polymerase III su 97.6 0.00034 7.3E-09 76.2 10.5 120 877-1012 6-147 (261)
489 PF00910 RNA_helicase: RNA hel 97.6 7E-05 1.5E-09 71.2 4.6 94 881-989 1-107 (107)
490 PF00493 MCM: MCM2/3/5 family 97.6 3.1E-05 6.8E-10 88.7 2.5 166 845-1028 25-224 (331)
491 PF05729 NACHT: NACHT domain 97.6 0.00053 1.1E-08 69.7 11.3 138 880-1027 2-165 (166)
492 TIGR02012 tigrfam_recA protein 97.6 0.0003 6.6E-09 79.5 10.0 119 873-991 50-193 (321)
493 PRK05818 DNA polymerase III su 97.6 0.00071 1.5E-08 73.7 12.3 126 588-741 5-147 (261)
494 PRK07276 DNA polymerase III su 97.6 0.00075 1.6E-08 75.3 12.8 128 876-1022 22-172 (290)
495 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00018 3.9E-09 83.0 8.1 101 875-990 59-168 (362)
496 PLN03210 Resistant to P. syrin 97.5 0.00062 1.3E-08 90.8 14.2 52 553-617 183-234 (1153)
497 PRK13765 ATP-dependent proteas 97.5 0.00051 1.1E-08 84.6 11.9 49 551-616 28-76 (637)
498 PRK13406 bchD magnesium chelat 97.5 0.00015 3.3E-09 88.4 7.1 123 879-1017 26-174 (584)
499 COG3284 AcoR Transcriptional a 97.5 0.0003 6.4E-09 84.0 9.2 199 557-791 316-539 (606)
500 PRK07276 DNA polymerase III su 97.5 0.0016 3.4E-08 72.7 14.5 132 589-751 23-172 (290)
No 1
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-121 Score=1037.04 Aligned_cols=854 Identities=37% Similarity=0.550 Sum_probs=640.9
Q ss_pred CeeEEEEeCCcccceeeCCHHHHHHHhhccccCCCCceEEEEEEeCCCC--eEEEEecCCcCCCCceeecHhHHhhcCCC
Q 001491 1 MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQ--RWVVAWSGATSSSSFIEVARQFAECISLA 78 (1068)
Q Consensus 1 ~~~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~--~~~~~w~g~~s~~~~iei~~~~a~~~gl~ 78 (1068)
|++.|++.+ +|+||||||..++..+... .|+.+|+..|.+.. .+++-|.|..++.+.||||+++|++|||.
T Consensus 3 ~a~vV~~~~-~r~cfv~lP~ql~~ai~~~------~~~~av~~v~~~~~~~~s~~~g~~s~~se~~ieIn~~~A~~l~L~ 75 (952)
T KOG0735|consen 3 MACVVNYKS-LRSCFVNLPEQLLEAISEP------VQNYAVQAVVSKNPIKKSWVFGHGSGSSENVIEINRVYAHTLGLA 75 (952)
T ss_pred ceEEEEeee-chhhhhccHHHHHHHHhcc------ccCceeEEEEcCCChhheeecccCCCCccceEEeehhhHhhccCC
Confidence 677888888 9999999999999999864 45688999887643 33344455556678999999999999999
Q ss_pred CCCEEEEEEeecCccceEEEEecCCCchhHHHHhcHHHHHHHHhcccceecCCCEEeEEecCceEEEEEEeccCCCCCeE
Q 001491 79 DHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVV 158 (1068)
Q Consensus 79 ~~~~v~~~~~~~~~~~~~v~veP~t~dDwEi~e~~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~ 158 (1068)
+|+.|.++++.+++.|++|+|||+|+|||||||+||+.+|.+||+|+|||++ ++||+|++++|+|+|+|+++.|++.||
T Consensus 76 e~~~V~l~~~~~v~~~~~V~VeP~TsdDWEIiElnA~~~e~~lL~Q~RIv~~-~~f~iwl~~~t~i~fqv~rl~Ps~~~g 154 (952)
T KOG0735|consen 76 ENQEVKLSIIDHVHEATQVEVEPVTSDDWEIIELNAEWLEENLLVQTRIVTP-EIFIIWLPSGTVIQFQVDRLIPSMLYG 154 (952)
T ss_pred CCCeEEEEEcCCccceeEEEEeeccCccHHHHHhhHHHHhhhhhhheeeccc-ceeEEEEcCccEEEEEEeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EecCCCEEEEeccCCCCCccccccchhhccccccccccceeeeecCCCCCccccccCCcccccccceeEEeCCCcccccc
Q 001491 159 QLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVS 238 (1068)
Q Consensus 159 ~l~~~tev~vapk~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1068)
||.++|||+||||+|+...+.+++.....+... +..+|. ......++|..+....+++||| +++...+
T Consensus 155 Rl~~~Tev~VaPK~~k~~l~~~~~g~~e~n~lk----s~~lr~------~~lrs~v~~~~~p~~n~s~vyi--~~aql~t 222 (952)
T KOG0735|consen 155 RLLRGTEVLVAPKPNKSALNVKENGVIEENTLK----SRSLRK------VQLRSVVEGRLLPDSNSSTVYI--NTAQLVT 222 (952)
T ss_pred eecCCceEEEecCcccchhhhhcccchhhhhhh----hhhhhh------hhhhhheecccccCcccceeee--cccccee
Confidence 999999999999999988644332212111110 011111 1234457788888888889998 3332222
Q ss_pred ccCceEEEeccCCCcCCCCCCCCCccccCccccccccCCCCccccccceeEEEEEeeccccccceeecHHHHHHHhcccc
Q 001491 239 LCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLH 318 (1068)
Q Consensus 239 ~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~ 318 (1068)
.+....+++...++.+ + +.+ ..+.+ .....+.+-..++|...+|..|.+++.++|.++.+...
T Consensus 223 ---~q~~~~~~k~~Lr~ss---r-----~d~---~~~~~---g~~~Skvv~~~~~c~~q~P~~H~ai~~~l~~~~~tpe~ 285 (952)
T KOG0735|consen 223 ---AQGPALSVKLPLRQSS---R-----SDE---VYNDG---GNLKSKVVEQDVVCPKQIPEFHFAISKSLWLSYSTPED 285 (952)
T ss_pred ---ccCceeeeeccccCCc---c-----chh---Hhhcc---CcchhhhhcccccCCCCCCcceeeEehhHHHhhcCCcc
Confidence 2222223333322210 0 000 00100 01112223334677788999999999999999974100
Q ss_pred ceEEEEeecccccCCCCceeeccceeeeccccccccccccccccccccccccccccCCccccCCCCcchhhHHhhhcCCC
Q 001491 319 SWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEP 398 (1068)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1068)
. + +++.+++ .|.-++.+..+++
T Consensus 286 ----------------------d--i-------k~~l~~~------------------------iw~~~n~i~~~~~--- 307 (952)
T KOG0735|consen 286 ----------------------D--I-------KTGLKFV------------------------IWNLNNPISSSKF--- 307 (952)
T ss_pred ----------------------c--h-------hcCceee------------------------eeccccchhhhhh---
Confidence 0 0 1111111 1111111111100
Q ss_pred CCchhhHHH--H-hhhcchhhHHHHHHHHHHHhhhhccccccccccccccCcceEEEEEeccccCCCCCCCCCcCccchh
Q 001491 399 SSKEDEEAV--Y-QFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALEN 475 (1068)
Q Consensus 399 ~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1068)
.++.. | .-++++++. +-+.+. +..+++++.+ .+.+|++....++....-+..++..+.+
T Consensus 308 ----i~~l~~vg~p~~tkk~l~----~eL~A~--------~~~ts~li~~--t~k~~~ie~~es~~~l~nq~eV~~~w~q 369 (952)
T KOG0735|consen 308 ----IEELKRVGLPDETKKNLS----SELVAA--------KLKTSYLIDG--TLKLFEIEVLESVSSLSNQEEVVRLWDQ 369 (952)
T ss_pred ----hHHHHhccCCcccccchh----Hhhhhh--------hhccccccCC--ceEEEEeeccccccccccchHHhhHHHh
Confidence 00000 0 001222222 112221 2333555555 6688888763322222211222222222
Q ss_pred hhhhhccchhhhhhcccccccccCCCcchhhhhHhhhccCCCchhHHHHhhcccCCCCccceeeeeccCccccccccccc
Q 001491 476 KTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSS 555 (1068)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 555 (1068)
...-+..+.|..+......+.+.|.|...+.+ ...... .+
T Consensus 370 ~~vt~~~~~ei~~~~~v~~~~~~g~K~~~~~l---------------------------------~~~~~e-------~d 409 (952)
T KOG0735|consen 370 LKVTKMPPLEIKITSDVNLPVLAGIKENSPDL---------------------------------VMSPFE-------HD 409 (952)
T ss_pred hccccCCchheeeeeeecchhhhcchhcCccc---------------------------------ccCcCC-------Cc
Confidence 11111112222222222211111111100000 000001 11
Q ss_pred cccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccccc
Q 001491 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1068)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1068)
++-....+++..+ ..++| ...++++||+||+|||||.|++++++++. ....+|+.+++|+.+.+.
T Consensus 410 ~i~~~s~kke~~n---~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~ 474 (952)
T KOG0735|consen 410 FIQVPSYKKENAN---QELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGS 474 (952)
T ss_pred eeecchhhhhhhh---hhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccch
Confidence 1111112222211 22222 34457899999999999999999999986 344599999999999999
Q ss_pred chhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEe
Q 001491 636 KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS 715 (1068)
Q Consensus 636 ~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIat 715 (1068)
..+.+++.++.+|.++.|++|+|+++||+|.|++ .++.++++....+..+..++.+.+..|...+. .+.+||+
T Consensus 475 ~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~-~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~------~ia~Iat 547 (952)
T KOG0735|consen 475 SLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS-ASSNENGQDGVVSERLAAFLNQVIKIYLKRNR------KIAVIAT 547 (952)
T ss_pred hHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc-cCcccCCcchHHHHHHHHHHHHHHHHHHccCc------EEEEEEe
Confidence 9999999999999999999999999999999997 44456666777888888988888888876543 4899999
Q ss_pred cCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhh
Q 001491 716 AQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGR 795 (1068)
Q Consensus 716 tn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r 795 (1068)
.+....+++.|.++++|+.++.+++|+..+|.+||+..+++....+..+++..++..|+||.+.||..+++||+|.|+..
T Consensus 548 ~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~le 627 (952)
T KOG0735|consen 548 GQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLE 627 (952)
T ss_pred chhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887778888888999999999999999999999999844
Q ss_pred hcccCCccccccccccchhhhhhhhcccccceeecccccccCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCc
Q 001491 796 YLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL 875 (1068)
Q Consensus 796 ~~~~~~~~~~~~~~~lt~edf~~Al~~~~P~slr~v~~~~~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~ 875 (1068)
... + ....++.++|.+++++|+|.++|++.+.++. ..+|++++|+.++++.+++.++||.+|+.+|.++|+
T Consensus 628 ris------~-~~klltke~f~ksL~~F~P~aLR~ik~~k~t--gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~pl 698 (952)
T KOG0735|consen 628 RIS------N-GPKLLTKELFEKSLKDFVPLALRGIKLVKST--GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPL 698 (952)
T ss_pred Hhc------c-CcccchHHHHHHHHHhcChHHhhhccccccC--CCCceecccHHHHHHHHHHHHhccccchHHHhhCCc
Confidence 321 1 2236899999999999999999999998886 479999999999999999999999999999999999
Q ss_pred cccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCC
Q 001491 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1068)
Q Consensus 876 ~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~ 955 (1068)
|.+.|+|||||||||||.||.++|..++++|++++++|++++|+|++|+++|++|.+|+..+||||||||||+++|+|||
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh 778 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH 778 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCC
Q 001491 956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIP 1034 (1068)
Q Consensus 956 ~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id 1034 (1068)
+++|+++|++||||++|||.+..+||+|+|+|+|||+|||||+||||||+.++|+.|++.+|++|++.+..++ .+.++|
T Consensus 779 DsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd 858 (952)
T KOG0735|consen 779 DSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD 858 (952)
T ss_pred CCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999977 667788
Q ss_pred Cchh
Q 001491 1035 FSSL 1038 (1068)
Q Consensus 1035 ~~~l 1038 (1068)
|..+
T Consensus 859 l~~~ 862 (952)
T KOG0735|consen 859 LECL 862 (952)
T ss_pred hHHH
Confidence 8665
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-83 Score=716.51 Aligned_cols=487 Identities=33% Similarity=0.561 Sum_probs=435.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
..+|++++|++..+.++.+.+..+. +++.|..+|+.||+|+|||||||||||+||+++|++++ .+++.+++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~---~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------vPf~~isA 256 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIK---HPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------VPFLSISA 256 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhc---CchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC------CceEeecc
Confidence 3468999999999999988776644 56689999999999999999999999999999999998 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
..+.+...|+.++.++++|+.|....|||+||||||.+.++|.. ...+..+++..+|+..||++..... ...+
T Consensus 257 peivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~---~g~~ 329 (802)
T KOG0733|consen 257 PEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKT---KGDP 329 (802)
T ss_pred hhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhccccccc---CCCC
Confidence 99999999999999999999999999999999999999876544 2345567899999999999875422 1136
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
|+|||+||+|+.|+++|+|+|||++.|.+..|+..+|.+||+.++++..+.- +.++..||..|.||.|+||..||.+|.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998655543 446899999999999999999999999
Q ss_pred HHHHhhhcccCC----------c-----cc------------------------------------cccccccchhhhhh
Q 001491 790 HAAVGRYLHSDS----------S-----FE------------------------------------KHIKPTLVRDDFSQ 818 (1068)
Q Consensus 790 ~~a~~r~~~~~~----------~-----~~------------------------------------~~~~~~lt~edf~~ 818 (1068)
..|++|.+.... . .. ......+..+||..
T Consensus 409 ~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~ 488 (802)
T KOG0733|consen 409 FVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEE 488 (802)
T ss_pred HHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHH
Confidence 999999774211 0 00 00012367899999
Q ss_pred hhcccccceeecccccccCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHH
Q 001491 819 AMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA 898 (1068)
Q Consensus 819 Al~~~~P~slr~v~~~~~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~al 898 (1068)
|+..+.|++.|+.....|+ +.|+++|++++++..|..++.+|.++++.|...|+..+.|+||+||||||||.||+|+
T Consensus 489 Al~~iQPSakREGF~tVPd---VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 489 ALSKIQPSAKREGFATVPD---VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred HHHhcCcchhcccceecCC---CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 9999999999999888875 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcccc
Q 001491 899 AAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL 978 (1068)
Q Consensus 899 A~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~ 978 (1068)
|++.|.+|++|++++|+++|+|++|..+|.+|.+|++..|||+||||+|+|.|+|+++..++..|++|+||++|||++..
T Consensus 566 ANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 566 ANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred hhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHH--hh-ccCCCCCchh----------------h
Q 001491 979 TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR--KV-CDTSIPFSSL----------------F 1039 (1068)
Q Consensus 979 ~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~--~~-~~~~id~~~l----------------~ 1039 (1068)
.+|+|||||||||.||||++||||||+.+++++|+.++|.+|++.+++ +. ++.+|||..+ .
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaL 725 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAAL 725 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHH
Confidence 999999999999999999999999999999999999999999999998 33 6677887654 4
Q ss_pred HHHHHHHHHhhhhhccc
Q 001491 1040 CNELLICKLWHFFMCVS 1056 (1068)
Q Consensus 1040 ~~~~~~~~l~~~~~~~~ 1056 (1068)
+.++.+.+|...++...
T Consensus 726 vreAsi~AL~~~~~~~~ 742 (802)
T KOG0733|consen 726 VREASILALRESLFEID 742 (802)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 56666777776666443
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-73 Score=651.73 Aligned_cols=459 Identities=35% Similarity=0.600 Sum_probs=419.4
Q ss_pred cccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccc
Q 001491 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1068)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~ 633 (1068)
.+++|...++..+.+-+...+. .+.++...+.++|+++|+|||||+|||.+++++|++.+ ++++.+++..+.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~--~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~~~i~~peli 255 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLR--HPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFLFLINGPELI 255 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhc--chhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC------ceeEecccHHHH
Confidence 3678888888888886644333 56688999999999999999999999999999999988 899999999999
Q ss_pred ccchhhHHHHHHHHHHHHHhcC-CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEE
Q 001491 634 LEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (1068)
Q Consensus 634 ~~~~~~~~~~l~~~f~~a~~~~-PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~v 712 (1068)
.+..++.++.++..|+++..++ |+++||||+|.+++++..... ...++..+|+.+|+..... +++++
T Consensus 256 ~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-----~e~Rv~sqlltL~dg~~~~-------~~viv 323 (693)
T KOG0730|consen 256 SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-----VESRVVSQLLTLLDGLKPD-------AKVIV 323 (693)
T ss_pred HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-----HHHHHHHHHHHHHhhCcCc-------CcEEE
Confidence 9999999999999999999999 999999999999976654332 4568888999999987633 25999
Q ss_pred EEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 713 VASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 713 Iattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
++++|+++.||++++| |||+..+.+..|+..+|.+|++.+....+.. ++..+..+|..|+||.++||..+|..|...+
T Consensus 324 l~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999887766 6778999999999999999999999999887
Q ss_pred HhhhcccCCccccccccccchhhhhhhhcccccceeecccccccCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhh
Q 001491 793 VGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQ 872 (1068)
Q Consensus 793 ~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P~slr~v~~~~~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~ 872 (1068)
.++ ++++|..|+.+..|+++|+.....+ .+.|+++||++++|+.|.+.++||.+|++.|.+
T Consensus 402 ~r~----------------~~~~~~~A~~~i~psa~Re~~ve~p---~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r 462 (693)
T KOG0730|consen 402 TRR----------------TLEIFQEALMGIRPSALREILVEMP---NVSWDDIGGLEELKRELQQAVEWPLKHPEKFAR 462 (693)
T ss_pred hhh----------------hHHHHHHHHhcCCchhhhheeccCC---CCChhhccCHHHHHHHHHHHHhhhhhchHHHHH
Confidence 655 6789999999999999998875554 589999999999999999999999999999999
Q ss_pred CCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 873 ~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
.++.+++++|||||||||||++|+++|.+++++|+++++++++++|+|++|..++++|++|++..|||+||||||++++.
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~ 542 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGS 542 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccC
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDT 1031 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~ 1031 (1068)
|+++.+++.+|++++||++|||++..++|+|||||||||.||+|++||||||+.|++++|+.+.|++|++..++++ ...
T Consensus 543 R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~ 622 (693)
T KOG0730|consen 543 RGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE 622 (693)
T ss_pred cCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc
Confidence 9888889999999999999999999999999999999999999999999999999999999999999999999999 666
Q ss_pred CCCCchh--------------hHHHHHHHHHhhhhh
Q 001491 1032 SIPFSSL--------------FCNELLICKLWHFFM 1053 (1068)
Q Consensus 1032 ~id~~~l--------------~~~~~~~~~l~~~~~ 1053 (1068)
.+|+..+ .|.+++..++..-+.
T Consensus 623 ~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 623 DVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE 658 (693)
T ss_pred cccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc
Confidence 6887665 667777777665544
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-62 Score=565.91 Aligned_cols=444 Identities=37% Similarity=0.632 Sum_probs=373.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
..+||+|+||||||++++++|++++ .|++.++|.++.....+..+..+..+|..++...|+|||+-++|.+..
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg------~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i- 504 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELG------LHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI- 504 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhC------CceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee-
Confidence 4599999999999999999999999 999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHH-hhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMD-EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld-~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~I 749 (1068)
+.++. ...++...+...+. +.. ....+.++||+++++.+.+++.+++ .|...+.++.|+.+||.+|
T Consensus 505 --d~dgg----ed~rl~~~i~~~ls~e~~-----~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~i 571 (953)
T KOG0736|consen 505 --DQDGG----EDARLLKVIRHLLSNEDF-----KFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEI 571 (953)
T ss_pred --cCCCc----hhHHHHHHHHHHHhcccc-----cCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHH
Confidence 22221 11244444444443 111 1122469999999999999999999 7777899999999999999
Q ss_pred HHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccC---------Cccccccccccchhhhhhhh
Q 001491 750 LEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSD---------SSFEKHIKPTLVRDDFSQAM 820 (1068)
Q Consensus 750 L~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~---------~~~~~~~~~~lt~edf~~Al 820 (1068)
|+.+.....+. .+..+..++..|.||+.+|++.++.++-..+..+..... ..........++++||.+++
T Consensus 572 Lq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kal 650 (953)
T KOG0736|consen 572 LQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKAL 650 (953)
T ss_pred HHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHH
Confidence 99988764432 334478899999999999999998888544444332111 01111223568999999999
Q ss_pred cccccceeecccccccCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHH
Q 001491 821 HEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900 (1068)
Q Consensus 821 ~~~~P~slr~v~~~~~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~ 900 (1068)
.+..... ......|+.+.+.|+|+||++++|..+.+.+.+|++|+++|.. +++.++|+|||||||||||.+|+|+|.
T Consensus 651 s~~~~~f--s~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 651 SRLQKEF--SDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred HHHHHhh--hhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHh
Confidence 8654432 2234567778899999999999999999999999999999986 678899999999999999999999999
Q ss_pred HcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCC--CCCCcchHHHHHHHHhccCcc--
Q 001491 901 ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVE-- 976 (1068)
Q Consensus 901 ~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~--~~~~~~~~~~~~lL~~Ld~~~-- 976 (1068)
+|..+|++|+++|++++|+|++|+++|++|++|+.++||||||||+|+++|.||. |+.++.+|++.|||.+||++.
T Consensus 728 EcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~ 807 (953)
T KOG0736|consen 728 ECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS 807 (953)
T ss_pred hceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999975 688999999999999999998
Q ss_pred ccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCC-HHHHHHHHHHHHHhh-ccCCCCCchh---------------h
Q 001491 977 VLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPS-PRERLDILKVISRKV-CDTSIPFSSL---------------F 1039 (1068)
Q Consensus 977 ~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~-~~~r~~Il~~~l~~~-~~~~id~~~l---------------~ 1039 (1068)
..++|+||+||||||+|||||+||||||+.+++++++ .+.+..|++.+.+++ +++++|+..+ .
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsL 887 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSL 887 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHH
Confidence 5778999999999999999999999999999999985 678899999999999 7788888654 6
Q ss_pred HHHHHHHHHhhhhhccccc
Q 001491 1040 CNELLICKLWHFFMCVSLN 1058 (1068)
Q Consensus 1040 ~~~~~~~~l~~~~~~~~~~ 1058 (1068)
|.++.+.++.|..-..+..
T Consensus 888 CSdA~l~AikR~i~~ie~g 906 (953)
T KOG0736|consen 888 CSDAMLAAIKRTIHDIESG 906 (953)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 8888888888877665544
No 5
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.4e-58 Score=570.74 Aligned_cols=465 Identities=33% Similarity=0.570 Sum_probs=401.3
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
..++++++|++..++.+.+.+...+ ..++++..++..+++++|||||||||||++++++|++++ .+++.+++
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~--~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~------~~~i~i~~ 245 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPM--KHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG------AYFISING 245 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC------CeEEEEec
Confidence 3567889999999999988876543 357789999999999999999999999999999999987 67888999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
..+.....+...+.+..+|+.+....|++|||||+|.+++.+.... ......+...|...++.+... +.
T Consensus 246 ~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~----~~~~~~~~~~Ll~~ld~l~~~-------~~ 314 (733)
T TIGR01243 246 PEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT----GEVEKRVVAQLLTLMDGLKGR-------GR 314 (733)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc----chHHHHHHHHHHHHhhccccC-------CC
Confidence 8888888888888999999999999999999999999986543322 122346677788888876532 25
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+++|++||.++.+++++++++||+..+.++.|+.++|.+|++.+.....+ ..+..+..++..++||+++|+..+++.|.
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~l~~la~~t~G~~gadl~~l~~~a~ 393 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVDLDKLAEVTHGFVGADLAALAKEAA 393 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999976654332 13445889999999999999999999999
Q ss_pred HHHHhhhcccCCc------c--ccccccccchhhhhhhhcccccceeecccccccCCCCCCCCCCCchhHHHHHHHHHHh
Q 001491 790 HAAVGRYLHSDSS------F--EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIE 861 (1068)
Q Consensus 790 ~~a~~r~~~~~~~------~--~~~~~~~lt~edf~~Al~~~~P~slr~v~~~~~~~~~~~~~~i~gl~~~k~~l~e~i~ 861 (1068)
..+++|....... . .......++.+||..|+....|+.+++.....+ ...|++++|++++++.+.+.+.
T Consensus 394 ~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~---~~~~~di~g~~~~k~~l~~~v~ 470 (733)
T TIGR01243 394 MAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVP---NVRWSDIGGLEEVKQELREAVE 470 (733)
T ss_pred HHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhcccc---ccchhhcccHHHHHHHHHHHHH
Confidence 9998876532110 0 001224578899999999999998887765544 4799999999999999999999
Q ss_pred ccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEE
Q 001491 862 LPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLL 941 (1068)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VL 941 (1068)
++.+++..+...+++++.++|||||||||||++|+++|++++.+|+.+++++++++|+|+++..++.+|..|+...||||
T Consensus 471 ~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~ii 550 (733)
T TIGR01243 471 WPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAII 550 (733)
T ss_pred hhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccCCCCCCC-CCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHH
Q 001491 942 FFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDI 1020 (1068)
Q Consensus 942 fiDEid~l~~~r~~~-~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~I 1020 (1068)
||||+|++++.|+.+ ..+..++++++||++||++...++++||+|||+|+.||+|++||||||+.|+|++|+.++|.+|
T Consensus 551 fiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 551 FFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred EEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 999999999998754 3455789999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh-ccCCCCCch
Q 001491 1021 LKVISRKV-CDTSIPFSS 1037 (1068)
Q Consensus 1021 l~~~l~~~-~~~~id~~~ 1037 (1068)
|+..++++ .+..+|+..
T Consensus 631 ~~~~~~~~~~~~~~~l~~ 648 (733)
T TIGR01243 631 FKIHTRSMPLAEDVDLEE 648 (733)
T ss_pred HHHHhcCCCCCccCCHHH
Confidence 99888776 344455433
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-47 Score=455.56 Aligned_cols=420 Identities=35% Similarity=0.542 Sum_probs=366.9
Q ss_pred chhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeE
Q 001491 579 GLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSI 658 (1068)
Q Consensus 579 ~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsI 658 (1068)
...+..++..++.+++++||||+|||+++++++.. . .+...++.......+.+..+..+...|..+....|++
T Consensus 7 ~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 79 (494)
T COG0464 7 PELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G------AEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSI 79 (494)
T ss_pred HHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c------CcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCe
Confidence 45667788899999999999999999999999998 3 3336677778888888888999999999999999999
Q ss_pred EEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccC
Q 001491 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQL 738 (1068)
Q Consensus 659 LfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l 738 (1068)
+++||+|.+.+.+.. ........+...+...++... . . .+.+++.++.+..+++++++++||+..+.+
T Consensus 80 i~~d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~------~-~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (494)
T COG0464 80 IFIDEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-R------G-QVIVIGATNRPDGLDPAKRRPGRFDREIEV 147 (494)
T ss_pred EeechhhhcccCccc----cccchhhHHHHHHHHhccccc-C------C-ceEEEeecCCccccChhHhCccccceeeec
Confidence 999999999875554 122233466777777777765 1 1 378888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhh
Q 001491 739 PAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQ 818 (1068)
Q Consensus 739 ~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~ 818 (1068)
..|+...+.+|+.......... .+..+..++..+.||.++++..++..+...+..+.. ........++.++|..
T Consensus 148 ~~~~~~~~~ei~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----~~~~~~~~~~~~~~~~ 221 (494)
T COG0464 148 NLPDEAGRLEILQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----DLVGEYIGVTEDDFEE 221 (494)
T ss_pred CCCCHHHHHHHHHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----ccCcccccccHHHHHH
Confidence 9999999988888665433222 255688999999999999999999999888887742 0112335688899999
Q ss_pred hhcccccceeecccccccCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHH
Q 001491 819 AMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA 898 (1068)
Q Consensus 819 Al~~~~P~slr~v~~~~~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~al 898 (1068)
++....|+ +++.... +.+.|.+++|++++++.+.+.++++.++++.|...+++++.++||+||||||||++|+++
T Consensus 222 ~l~~~~~~--~~~~~~~---~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkav 296 (494)
T COG0464 222 ALKKVLPS--RGVLFED---EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAV 296 (494)
T ss_pred HHHhcCcc--cccccCC---CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHH
Confidence 99999887 4443333 358999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcccc
Q 001491 899 AAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL 978 (1068)
Q Consensus 899 A~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~ 978 (1068)
|.+++.+|+.+++++++++|+|+++++++.+|..|+...||||||||+|++++.|+.+..+...+++++||++|++++..
T Consensus 297 a~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 297 ALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred HhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999998887777789999999999999999
Q ss_pred CcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 979 TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 979 ~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.+|+||+|||+|+.+|+|++||||||+.|+|++|+.++|.+||+..++..
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999855
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-41 Score=362.64 Aligned_cols=200 Identities=40% Similarity=0.671 Sum_probs=190.2
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
+.+.|+++||+++.++.++|.+++|++++++|...|+.|+.|+|||||||||||.||+|+|+..+.+|+.+.+++|+.+|
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY 225 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY 225 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHH---HHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRV---VNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~---~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
+|+...-+|++|..|+...|||+||||||+++.+|..++++...++ +-+||.+|||+...++|=|||||||+|.|||
T Consensus 226 iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDP 305 (406)
T COG1222 226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDP 305 (406)
T ss_pred hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccCh
Confidence 9999999999999999999999999999999999987777655544 5678899999999999999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchh
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSL 1038 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l 1038 (1068)
||+||||||+.|+|++|+.+.|.+||+.+++++ ++.++||..+
T Consensus 306 ALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~l 349 (406)
T COG1222 306 ALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELL 349 (406)
T ss_pred hhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHH
Confidence 999999999999999999999999999999999 7778998665
No 8
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-38 Score=348.39 Aligned_cols=441 Identities=20% Similarity=0.296 Sum_probs=321.0
Q ss_pred ccccccccccccchhHHHHHHHHH--HHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeE
Q 001491 547 QGFDSNVSSLSWMGTTASDVINRI--KVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI 624 (1068)
Q Consensus 547 ~~~~~~~~~l~G~~~~~~~i~~~l--~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~ 624 (1068)
.+++..-..++|++..+.+|..+. ..++. +....++|.+.-+|+|||||||||||.+||.+.+.|+.+..
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFp---p~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP----- 285 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFP---PEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREP----- 285 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCC---HHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCC-----
Confidence 344555567899999999998765 33454 34778899999999999999999999999999999986543
Q ss_pred EEEecccccccchhhHHHHHHHHHHHHHhc--------CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 001491 625 VFVCCSRLSLEKGPIIRQALSNFISEALDH--------APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (1068)
Q Consensus 625 ~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~--------~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (1068)
..++..++..+++|+.+..++.+|..|..- .-.|+++||||.++..|+...++.+ .-..+.++|+..||+
T Consensus 286 KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TG--VhD~VVNQLLsKmDG 363 (744)
T KOG0741|consen 286 KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTG--VHDTVVNQLLSKMDG 363 (744)
T ss_pred cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCC--ccHHHHHHHHHhccc
Confidence 357788888899999999999999887531 2239999999999987776654321 224788889998887
Q ss_pred hccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHh---hccccCCHHHHHHHhhcc
Q 001491 697 YGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ---RRSLECSDEILLDVASKC 773 (1068)
Q Consensus 697 ~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~---~~~l~~~~~~l~~la~~t 773 (1068)
...- .+|.||+.||+++.+|.+|+|||||..++++..||+..|.+|++-+.. .+++--++.++.++|..|
T Consensus 364 VeqL-------NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 364 VEQL-------NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALT 436 (744)
T ss_pred HHhh-------hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh
Confidence 6543 369999999999999999999999999999999999999999985543 334444555699999999
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhcccCC----ccccccccccchhhhhhhhcccccceeecc-ccc-ccCCCCCCCCCCC
Q 001491 774 DGYDAYDLEILVDRTVHAAVGRYLHSDS----SFEKHIKPTLVRDDFSQAMHEFLPVAMRDI-TKT-SAEGGRSGWDDVG 847 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~~a~~r~~~~~~----~~~~~~~~~lt~edf~~Al~~~~P~slr~v-~~~-~~~~~~~~~~~i~ 847 (1068)
..|+|++|+.+++.|...|+.|....+. .....+...++++||..|+.+..|..=..- .+. ....+...|....
T Consensus 437 KNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v 516 (744)
T KOG0741|consen 437 KNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPV 516 (744)
T ss_pred cCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccH
Confidence 9999999999999999999999875441 222344567999999999999888641110 000 0001122333321
Q ss_pred chhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccH----
Q 001491 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE---- 923 (1068)
Q Consensus 848 gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se---- 923 (1068)
-+.+.+-.. +..-.+.....+-..+||.||||+|||+||..+|..++++|+.+-.++- .+|-+|
T Consensus 517 -----~~il~~G~l----lv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~---miG~sEsaKc 584 (744)
T KOG0741|consen 517 -----TRILDDGKL----LVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED---MIGLSESAKC 584 (744)
T ss_pred -----HHHHhhHHH----HHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH---ccCccHHHHH
Confidence 111111100 0111111222344579999999999999999999999999999776653 355555
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhc----cCc-cccCcEEEEEeCCCCCCCCh-hh
Q 001491 924 QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL----DGV-EVLTGVFVFAATSRPDLLDA-AL 997 (1068)
Q Consensus 924 ~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~L----d~~-~~~~~v~viatTn~~d~ld~-al 997 (1068)
..++.+|+.|....-+|+++|+++++. +.-..++|.-|..|+.| ... ...+..+|++||++.+.+.. .+
T Consensus 585 ~~i~k~F~DAYkS~lsiivvDdiErLi-----D~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i 659 (744)
T KOG0741|consen 585 AHIKKIFEDAYKSPLSIIVVDDIERLL-----DYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGI 659 (744)
T ss_pred HHHHHHHHHhhcCcceEEEEcchhhhh-----cccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCH
Confidence 568999999999999999999999985 33344556555554444 322 23457899999998766532 34
Q ss_pred cCCCCcceEEEcCCCCH-HHHHHHHHH
Q 001491 998 LRPGRLDRLLFCDFPSP-RERLDILKV 1023 (1068)
Q Consensus 998 ~r~gRfd~~i~~~~p~~-~~r~~Il~~ 1023 (1068)
+. =|+-.|.++..+. ++..+++..
T Consensus 660 ~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 660 LD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred HH--hhhheeecCccCchHHHHHHHHH
Confidence 44 5788888887765 555555543
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-37 Score=331.13 Aligned_cols=247 Identities=22% Similarity=0.342 Sum_probs=216.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
+.++.+++|++.++++|.+.+.+ ...++++|...|+.||+|||||||||||||+||||+|+..+ +.|+.+..
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VEL--PL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~------AtFIrvvg 218 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVEL--PLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD------ATFIRVVG 218 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcc--cccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC------ceEEEecc
Confidence 45688999999999999997754 33467899999999999999999999999999999999987 89999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.|..++.|+..+.++++|..|+.++|+|+||||||++.+.|.+...+.+.+.++. .-.|++.||+|... ++
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRT-mleLL~qlDGFD~~-------~n 290 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRT-MLELLNQLDGFDPR-------GN 290 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHH-HHHHHHhccCCCCC-------CC
Confidence 99999999999999999999999999999999999999988877766655555444 44466778888754 36
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
|-||++||+++.|||+|.|||||++.|+||.|+.+.|.+||+.+.++..+. .+-.++.+|..|+|+||+||+.+|.+|-
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAG 369 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAG 369 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887765442 3345999999999999999999999999
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhcccc
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~ 824 (1068)
+.|++.. ...++++||.+|.+...
T Consensus 370 m~AiR~~-----------R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 370 MFAIRER-----------RDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHhc-----------cCeecHHHHHHHHHHHH
Confidence 9998762 35699999999987754
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=342.59 Aligned_cols=216 Identities=36% Similarity=0.642 Sum_probs=202.9
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
.+.+.++||++.....+.+.+.. .++++.|...|+.|++|+||+||||||||+||+++|+++|.+|++++++++++.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 46899999999999999999988 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcccc----CcEEEEEeCCCCCCCCh
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL----TGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~----~~v~viatTn~~d~ld~ 995 (1068)
|++|+.+|++|+.|....|||+||||||++.|+|...+.+..+|++.|||+-||++... ++|+||+||||||.|||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 99999999999999999999999999999999999888888999999999999988654 68999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchh--------------hHHHHHHHHHhhhhhccc
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSL--------------FCNELLICKLWHFFMCVS 1056 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l--------------~~~~~~~~~l~~~~~~~~ 1056 (1068)
||+|+||||+.|.++.|+..+|.+|++.+++++ ++..+||..+ .|.+++.+++-|.+-..+
T Consensus 345 aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred HHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999988 6677887554 688899999998776444
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-35 Score=298.12 Aligned_cols=204 Identities=37% Similarity=0.632 Sum_probs=192.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
+.+.|.++||++-.++.+++++++|+-+.+++.+.|+.|++|+|+|||||||||.||+++|+.....|+.+.+++++.+|
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky 229 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchH---HHHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDR---VVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~---~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
.|+....+|++|..|+...|+|+||||+|+++.+|-..+++..++ ++-+||++|||+....+|-||++|||.|.|||
T Consensus 230 lgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldp 309 (408)
T KOG0727|consen 230 LGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDP 309 (408)
T ss_pred hccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCH
Confidence 999999999999999999999999999999999998777777654 56688899999999999999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchhhHHH
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSLFCNE 1042 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l~~~~ 1042 (1068)
||+||||+|+.|+|+.|+..+++-+|..+..++ +...+|+.++++.+
T Consensus 310 allrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rp 357 (408)
T KOG0727|consen 310 ALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARP 357 (408)
T ss_pred hhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCc
Confidence 999999999999999999999999999999999 77889988875543
No 12
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=7.2e-33 Score=325.70 Aligned_cols=326 Identities=24% Similarity=0.407 Sum_probs=248.9
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccc
Q 001491 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (1068)
Q Consensus 655 ~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~ 734 (1068)
.|+++++.|++.++. +. .+.+.|.++...+.... ..+|+.+. .-.+|+.|.+ +..
T Consensus 81 ~~~~~vl~d~h~~~~---------~~----~~~r~l~~l~~~~~~~~-------~~~i~~~~--~~~~p~el~~---~~~ 135 (489)
T CHL00195 81 TPALFLLKDFNRFLN---------DI----SISRKLRNLSRILKTQP-------KTIIIIAS--ELNIPKELKD---LIT 135 (489)
T ss_pred CCcEEEEecchhhhc---------ch----HHHHHHHHHHHHHHhCC-------CEEEEEcC--CCCCCHHHHh---cee
Confidence 478999999999872 11 23444444433332211 23334333 2457888775 344
Q ss_pred cccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchh
Q 001491 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 814 (1068)
Q Consensus 735 ~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~e 814 (1068)
.+.+|.|+.+|+.++++.+....+...++..++.++..+.|++..+++.++.++.... . .++.+
T Consensus 136 ~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~-~---------------~~~~~ 199 (489)
T CHL00195 136 VLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY-K---------------TIDEN 199 (489)
T ss_pred EEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-C---------------CCChh
Confidence 7899999999999999988877777889999999999999999999999887754321 0 11222
Q ss_pred hhhhhhccccccee-ecccccccCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhH
Q 001491 815 DFSQAMHEFLPVAM-RDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTH 893 (1068)
Q Consensus 815 df~~Al~~~~P~sl-r~v~~~~~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~ 893 (1068)
++...++......- .++....+ ....|++++|++.+|+.+.+.... +.......+++++.++||+||||||||+
T Consensus 200 ~~~~i~~~k~q~~~~~~~le~~~--~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTl 274 (489)
T CHL00195 200 SIPLILEEKKQIISQTEILEFYS--VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSL 274 (489)
T ss_pred hHHHHHHHHHHHHhhhccccccC--CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHH
Confidence 21111111000000 01111111 246799999999999999876542 2334556778889999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCC-CCCCCcchHHHHHHHHhc
Q 001491 894 IVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG-HDNTGVTDRVVNQFLTEL 972 (1068)
Q Consensus 894 lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~-~~~~~~~~~~~~~lL~~L 972 (1068)
+|+++|++++.+++.++++.++++|+|+++..++++|..|+...||||||||+|+++++++ .+..+...+++++|++.|
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l 354 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWL 354 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988653 334556788999999999
Q ss_pred cCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 973 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 973 d~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+ ....+++||||||+++.||++++|+||||+.|+++.|+.++|.+||+.++++.
T Consensus 355 ~--~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 355 S--EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred h--cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 8 34578999999999999999999999999999999999999999999999886
No 13
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.3e-32 Score=343.07 Aligned_cols=452 Identities=17% Similarity=0.204 Sum_probs=309.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc----eeeeEEEE
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~i 627 (1068)
.+..++|.+..++.+++.+ . .....++||+||||||||++++++|+.+..... ....++.+
T Consensus 180 ~l~~~igr~~ei~~~~~~L----~-----------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVL----C-----------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCcccCcHHHHHHHHHHH----h-----------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3556788888888766533 1 112357999999999999999999998843221 13667888
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCccc
Q 001491 628 CCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1068)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1068)
++..+. ..+.|+.++.++.+|+++.++.+.||||||+|.+++.+...++ .. ...+.|...+..
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~---~~---~~~~~L~~~l~~--------- 309 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG---SM---DASNLLKPALSS--------- 309 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc---cH---HHHHHHHHHHhC---------
Confidence 888876 4567889999999999998888999999999999864322111 11 233445444432
Q ss_pred CCCcEEEEEecCCCC-----CCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhh----ccccCCHHHHHHHhhccCCC
Q 001491 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGY 776 (1068)
Q Consensus 706 ~~~~V~vIattn~~~-----~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~----~~l~~~~~~l~~la~~t~g~ 776 (1068)
+.+.+|++||..+ ..++++.| ||. .++++.|+.+++.+|++..... +++.++++++..++..+..|
T Consensus 310 --g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ry 384 (731)
T TIGR02639 310 --GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARY 384 (731)
T ss_pred --CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcc
Confidence 2589999999743 46899999 997 7999999999999999976553 45678999999999888777
Q ss_pred Cch-----hHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcccccceeeccccc----ccCCCCCCCCCCC
Q 001491 777 DAY-----DLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKT----SAEGGRSGWDDVG 847 (1068)
Q Consensus 777 s~~-----DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P~slr~v~~~----~~~~~~~~~~~i~ 847 (1068)
-+. -.-.+++.|+.....+ .. ......++.+|+..++...+......+... ...........+.
T Consensus 385 i~~r~~P~kai~lld~a~a~~~~~--~~-----~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~ 457 (731)
T TIGR02639 385 INDRFLPDKAIDVIDEAGASFRLR--PK-----AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIF 457 (731)
T ss_pred cccccCCHHHHHHHHHhhhhhhcC--cc-----cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhccee
Confidence 543 2345566555322111 00 011245888899888877542211111000 0000112355678
Q ss_pred chhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhh-----hhcccc
Q 001491 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-----KYIGAS 922 (1068)
Q Consensus 848 gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~-----~~~g~s 922 (1068)
|++++.+.+...+..... ....+.++.+.+||+||+|||||++|+++|+.++.+++.++++++.. +++|..
T Consensus 458 GQ~~ai~~l~~~i~~~~~----g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 458 GQDEAIDSLVSSIKRSRA----GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred CcHHHHHHHHHHHHHHhc----CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 888888888877653210 01112345567999999999999999999999999999999988643 223322
Q ss_pred HH-----HHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc---------ccCcEEEEEeCC
Q 001491 923 EQ-----AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATS 988 (1068)
Q Consensus 923 e~-----~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~---------~~~~v~viatTn 988 (1068)
.. ....+...++..+.+||||||+|++ ++.+.+.|++.||... .+++++||+|||
T Consensus 534 ~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn 602 (731)
T TIGR02639 534 PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSN 602 (731)
T ss_pred CCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCC
Confidence 11 1223445556677899999999998 5688999999998542 245788999998
Q ss_pred CCC-------------------------CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh----ccCCCCCchhh
Q 001491 989 RPD-------------------------LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV----CDTSIPFSSLF 1039 (1068)
Q Consensus 989 ~~d-------------------------~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~----~~~~id~~~l~ 1039 (1068)
... .+.|+|+. |||.+|.|.+++.++..+|++..++++ ....+ .+.
T Consensus 603 ~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~---~l~ 677 (731)
T TIGR02639 603 AGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI---KLE 677 (731)
T ss_pred cchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC---eEE
Confidence 641 14677776 999999999999999999999999865 22222 244
Q ss_pred HHHHHHHHHhhhhhcccccccccccc
Q 001491 1040 CNELLICKLWHFFMCVSLNLSSYIIF 1065 (1068)
Q Consensus 1040 ~~~~~~~~l~~~~~~~~~~~~~~~~~ 1065 (1068)
..+.+..+|....+....+-|.+-++
T Consensus 678 i~~~a~~~La~~~~~~~~GaR~l~r~ 703 (731)
T TIGR02639 678 LTDDAKKYLAEKGYDEEFGARPLARV 703 (731)
T ss_pred eCHHHHHHHHHhCCCcccCchHHHHH
Confidence 55556666665555555555554443
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=313.28 Aligned_cols=196 Identities=35% Similarity=0.630 Sum_probs=185.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
.+.|+|+-|.++.|+.|.|.++. ++.|.-|.+.|-+.+.|+||+||||||||.||||+|.+.|.+|+...+++|-..|+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 47899999999999999998884 68888899999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcC
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLR 999 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r 999 (1068)
|-...++|++|..|++..||||||||+|++.++|......+....+||||-+|||+....+++||+|||.||.||+||.|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~R 458 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTR 458 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcC
Confidence 99999999999999999999999999999999997766668899999999999999999999999999999999999999
Q ss_pred CCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCc
Q 001491 1000 PGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFS 1036 (1068)
Q Consensus 1000 ~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~ 1036 (1068)
|||||++|.++.||...|.+|++..+.++ .+++||..
T Consensus 459 PGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~ 496 (752)
T KOG0734|consen 459 PGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPK 496 (752)
T ss_pred CCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHh
Confidence 99999999999999999999999999998 55667763
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-33 Score=283.27 Aligned_cols=199 Identities=42% Similarity=0.678 Sum_probs=185.0
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
++..|+-+||++...+.+++.+++|.+|+++|...++..+.|+|||||||||||.+|+++|....+.|+.+++++++.+|
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcch---HHHHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~---~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
+|+...-+|++|-.|+...|+|+|.||||++...|..++.+... |..-+||.+|||++...++-||++|||.|-+||
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~ 301 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDP 301 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccH
Confidence 99999999999999999999999999999999998766555333 455677899999999999999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCch
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSS 1037 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~ 1037 (1068)
||+||||+|+.|+|++|+.+.|.+|++...+++ +...||+..
T Consensus 302 allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~k 344 (404)
T KOG0728|consen 302 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRK 344 (404)
T ss_pred hhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHH
Confidence 999999999999999999999999999999998 556666643
No 16
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-33 Score=319.77 Aligned_cols=247 Identities=20% Similarity=0.314 Sum_probs=218.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
+.++++++|++..+.++.+.+ .....+++.|.++|+.||+|||||||||||||++||++|.+.+ .+|+.+.+
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V--~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~------~nFlsvkg 501 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAV--EWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG------MNFLSVKG 501 (693)
T ss_pred CCChhhccCHHHHHHHHHHHH--hhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc------CCeeeccC
Confidence 456789999999999988866 3444577899999999999999999999999999999999988 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
.++..+++|+.++.++++|+.|+...|+|+||||||.+.+.|+...+ ....+++.+|++.||++.... +
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~----~v~~RVlsqLLtEmDG~e~~k-------~ 570 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS----GVTDRVLSQLLTEMDGLEALK-------N 570 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc----chHHHHHHHHHHHcccccccC-------c
Confidence 99999999999999999999999999999999999999987763322 556789999999999987653 5
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHH-HHHHHhhccCCCCchhHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~-~l~~la~~t~g~s~~DL~~Lv~~a 788 (1068)
|+|||+||+|+.||++|.|||||+..+++|+|+.+.|.+||+.++++..+ +++ ++..||..|+||||+||..+|++|
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~--~~~vdl~~La~~T~g~SGAel~~lCq~A 648 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF--SEDVDLEELAQATEGYSGAEIVAVCQEA 648 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC--CccccHHHHHHHhccCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876544 444 699999999999999999999999
Q ss_pred HHHHHhhhcccCCccccccccccchhhhhhhhcccccc
Q 001491 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1068)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P~ 826 (1068)
...|+++.+. ...+..++|.+|++...|+
T Consensus 649 ~~~a~~e~i~---------a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 649 ALLALRESIE---------ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHHHhcc---------cccccHHHHHHHHHhhccc
Confidence 9999987542 3568889999999876653
No 17
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-31 Score=323.34 Aligned_cols=447 Identities=15% Similarity=0.190 Sum_probs=297.9
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCC----ceeeeEEEEe
Q 001491 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVC 628 (1068)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i~ 628 (1068)
+..++|.+..+..+++.+.. ....++||+||||||||++|+++|..+.... .....++.++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r---------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR---------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc---------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 45678899988888875422 1235689999999999999999998763221 1123344445
Q ss_pred ccccc--ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccC
Q 001491 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1068)
Q Consensus 629 ~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1068)
...+. ..+.|..++.++.++..+....+.||||||+|.+++.+....+ . ..+.+.|...+..
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g---~---~d~~nlLkp~L~~---------- 313 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---Q---VDAANLIKPLLSS---------- 313 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc---H---HHHHHHHHHHHhC----------
Confidence 44444 3456788888999999888778899999999999864422111 1 2344445544432
Q ss_pred CCcEEEEEecCCCC-----CCChhhhcCCcccccccCCCCCHHHHHHHHHHHHh----hccccCCHHHHHHHhhccCCC-
Q 001491 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDGY- 776 (1068)
Q Consensus 707 ~~~V~vIattn~~~-----~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~----~~~l~~~~~~l~~la~~t~g~- 776 (1068)
+.+.+|++|+..+ ..|++|.| ||. .+.++.|+.+++.+||+.+.. .+++.++++++..++..+..|
T Consensus 314 -g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 314 -GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred -CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 2589999999864 46999999 997 799999999999999996544 356778899888777666554
Q ss_pred ----CchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcccccceeeccccccc----CCCCCCCCCCCc
Q 001491 777 ----DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVGG 848 (1068)
Q Consensus 777 ----s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P~slr~v~~~~~----~~~~~~~~~i~g 848 (1068)
.|...-.+++.|+... |..... .....++.+|+.+.+...+......+..... ......-..+.|
T Consensus 390 ~~r~lPdKaidlldea~a~~--~~~~~~-----~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViG 462 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARA--RLMPVS-----KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFG 462 (758)
T ss_pred cCccChHHHHHHHHHHHHhh--ccCccc-----ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeC
Confidence 3445667788776532 111100 0123467777777766554321111110000 001122345899
Q ss_pred hhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhh-----hhhccccH
Q 001491 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-----NKYIGASE 923 (1068)
Q Consensus 849 l~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~-----~~~~g~se 923 (1068)
++++.+.+.+.+....... ..+.++.+++||+||||||||.+|+++|+.++.+++.++++++. .+++|...
T Consensus 463 Q~~ai~~l~~~i~~~~~gl----~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGL----GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred cHHHHHHHHHHHHHHhccc----cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCC
Confidence 9999999988876431100 11234556899999999999999999999999999999988764 33444322
Q ss_pred HH-----HHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc---------ccCcEEEEEeCCC
Q 001491 924 QA-----VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSR 989 (1068)
Q Consensus 924 ~~-----l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~---------~~~~v~viatTn~ 989 (1068)
.. -..+....+..+.+||||||||++ +..+.+.|++.||... .+++++||+|||.
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 11 112333445566789999999998 5678999999998432 2357899999993
Q ss_pred C-------------------------CCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh----ccCCCCCchhhH
Q 001491 990 P-------------------------DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV----CDTSIPFSSLFC 1040 (1068)
Q Consensus 990 ~-------------------------d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~----~~~~id~~~l~~ 1040 (1068)
. ..+.|+|+. |+|.+|.|++++.++..+|++.+++++ ....+. +..
T Consensus 608 g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~---l~~ 682 (758)
T PRK11034 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVS---LEV 682 (758)
T ss_pred CHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---ceE
Confidence 2 125678887 999999999999999999999888766 222332 333
Q ss_pred HHHHHHHHhhhhhcccccccc
Q 001491 1041 NELLICKLWHFFMCVSLNLSS 1061 (1068)
Q Consensus 1041 ~~~~~~~l~~~~~~~~~~~~~ 1061 (1068)
.+.+..+|....+.....-|.
T Consensus 683 ~~~~~~~l~~~~~~~~~GAR~ 703 (758)
T PRK11034 683 SQEARDWLAEKGYDRAMGARP 703 (758)
T ss_pred CHHHHHHHHHhCCCCCCCCch
Confidence 444444444444444433333
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-31 Score=273.39 Aligned_cols=213 Identities=36% Similarity=0.574 Sum_probs=192.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
...|+++||++...+.+.+.+.+|..|.+.|.+.+++++.|+|+|||||||||.+||+.|...+..|..+.++.++..|+
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfI 246 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 246 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchH---HHHHHHHhccCccccCcEEEEEeCCCCCCCChh
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDR---VVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 996 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~---~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~a 996 (1068)
|+...-+|+.|.-|+...|+|+||||+|++..+|-.+...-.++ ..-+||.+|||+.+...+-|||+|||.|-+|||
T Consensus 247 GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPA 326 (424)
T KOG0652|consen 247 GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPA 326 (424)
T ss_pred cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHH
Confidence 99999999999999999999999999999998886544333333 445678899999999999999999999999999
Q ss_pred hcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchh--------------hHHHHHHHHHhhhh
Q 001491 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSL--------------FCNELLICKLWHFF 1052 (1068)
Q Consensus 997 l~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l--------------~~~~~~~~~l~~~~ 1052 (1068)
|+|.||+|+.|+|+.|+.+.|.+|++.+.+++ +...++|.++ +|-++...+|.|-.
T Consensus 327 LlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 327 LLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred HhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc
Confidence 99999999999999999999999999999999 6677888766 45555555555543
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=288.61 Aligned_cols=214 Identities=33% Similarity=0.574 Sum_probs=194.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
...|+||.|+.++++.|+|++.+|+.+++.|+.. ++|..++|++||||||||.||+|+|.+||..||.|+.+.+.++|-
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence 4899999999999999999999999999999874 477889999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCC-CCCcchHHHHHHHHhccCcccc----CcEEEEEeCCCCCCCC
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVL----TGVFVFAATSRPDLLD 994 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~-~~~~~~~~~~~lL~~Ld~~~~~----~~v~viatTn~~d~ld 994 (1068)
|++|+-+|-+|+.|+-..|++|||||||+|..+||.+ ..+..+|+.++||.+|||+... +-|+|+|+||-|=.||
T Consensus 287 GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiD 366 (491)
T KOG0738|consen 287 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDID 366 (491)
T ss_pred cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchH
Confidence 9999999999999999999999999999999999875 3455789999999999998653 3499999999999999
Q ss_pred hhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchh--------------hHHHHHHHHHhhhhhccc
Q 001491 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSL--------------FCNELLICKLWHFFMCVS 1056 (1068)
Q Consensus 995 ~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l--------------~~~~~~~~~l~~~~~~~~ 1056 (1068)
.||+| ||.+.|+++.|+.+.|..+++..++.. .+..+++..+ +|.++.+-.+.|.+.+..
T Consensus 367 EAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 367 EALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLT 441 (491)
T ss_pred HHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999 999999999999999999999999888 5566666443 788888888887776644
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-31 Score=279.23 Aligned_cols=214 Identities=33% Similarity=0.584 Sum_probs=191.5
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
...|.+++|++...+.+++.+++|+-|++.|...+++++.+++|||+||||||.||+|+|+.....|+.+.+++++.+|.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkyl 260 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHH---HHHHHhccCccccCcEEEEEeCCCCCCCChh
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVV---NQFLTELDGVEVLTGVFVFAATSRPDLLDAA 996 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~---~~lL~~Ld~~~~~~~v~viatTn~~d~ld~a 996 (1068)
|+...-+|++|.-|....|+|+||||||++..+|-..+++-.+++. -+||.+|||+...+.|-||+|||+.+.||||
T Consensus 261 GdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPa 340 (440)
T KOG0726|consen 261 GDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA 340 (440)
T ss_pred ccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHh
Confidence 9999999999999999999999999999999988666665555444 4677888999999999999999999999999
Q ss_pred hcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCch--------------hhHHHHHHHHHhhhhh
Q 001491 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSS--------------LFCNELLICKLWHFFM 1053 (1068)
Q Consensus 997 l~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~--------------l~~~~~~~~~l~~~~~ 1053 (1068)
|.||||+|+.|+|+.|+...+..||..+..++ +...+.+.. .+|.++-..+|.-+-+
T Consensus 341 LiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm 412 (440)
T KOG0726|consen 341 LIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM 412 (440)
T ss_pred hcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh
Confidence 99999999999999999999999999998887 444444333 3677777777654433
No 21
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=275.59 Aligned_cols=197 Identities=38% Similarity=0.655 Sum_probs=182.4
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
+.+.|.+++|-.+..+.+++.++.|+-+++.|.+.++.++.++|+|||||||||.+|+++|+..+.-|+.+-+++++.+|
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky 251 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 251 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcch---HHHHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~---~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
+|+...-+|++|+.|+..+.||+||||+|++.+.|-.+..+... |..-+|+++|||+...+++-|+++||||+.|||
T Consensus 252 vgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldp 331 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 331 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCH
Confidence 99999999999999999999999999999998888555444444 445667789999999999999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCC
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPF 1035 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~ 1035 (1068)
||+||||+|+.++|..|+.+.|..||+.+.+.+ .+..|.|
T Consensus 332 allrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ 372 (435)
T KOG0729|consen 332 ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRF 372 (435)
T ss_pred hhcCCcccccceeccCCcccccceeEEEeccccccccchhH
Confidence 999999999999999999999999999999998 4455555
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-31 Score=312.77 Aligned_cols=210 Identities=38% Similarity=0.645 Sum_probs=189.2
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
..+.|.|+.|.+++++.|+|.+. .++.++.|...|.+.++|+||+||||||||.||+|+|.+.|.+|+.++++|++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 34889999999999999999988 47999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCC----CCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCC
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH----DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLD 994 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~----~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld 994 (1068)
+|....++|++|..|+...|||+||||||.+...|++ +.+......+||||.+||+....++|+|+|+||++|.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999999942 334445668999999999999999999999999999999
Q ss_pred hhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhhcc--CCCCCchh--------------hHHHHHHHHHh
Q 001491 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKVCD--TSIPFSSL--------------FCNELLICKLW 1049 (1068)
Q Consensus 995 ~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~~~--~~id~~~l--------------~~~~~~~~~l~ 1049 (1068)
+||+||||||+.|.++.|+..+|.+|++.+++++-. +.+|++.+ .|++++..+..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAAR 535 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH
Confidence 999999999999999999999999999999988822 34444332 66777666554
No 23
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-30 Score=313.59 Aligned_cols=448 Identities=21% Similarity=0.293 Sum_probs=322.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...|.+++|++..++.+.+.+ ++...+++.|..+++.||+|+|++||||||||..|+++|..+......+. +..-..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmV--l~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kis-ffmrkg 337 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMV--LLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKIS-FFMRKG 337 (1080)
T ss_pred ccCccccccHHHHHHHHHHHH--HhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccc-hhhhcC
Confidence 456889999999999998855 33444788999999999999999999999999999999999875554433 333444
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
.+..++++|+.+..++.+|++|+..+|+|+|+||||.|++.++..+. + .-..+...|+.+|+++... +.
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE-q---ih~SIvSTLLaLmdGldsR-------gq 406 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE-Q---IHASIVSTLLALMDGLDSR-------GQ 406 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH-H---hhhhHHHHHHHhccCCCCC-------Cc
Confidence 55667889999999999999999999999999999999986654321 1 1236677788889987755 36
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
|++|++||+++.++++|+|+|||++.++|+.|+.+.|.+|+..+-.+..-.+....+..+|+.|.||-++||+.+|..|.
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987777777788889999999999999999999999999
Q ss_pred HHHHhhhccc-----CCccccccccccchhhhhhhhcccccceeeccccc-ccCCCCCCCCCCCchhHHHHHH-------
Q 001491 790 HAAVGRYLHS-----DSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKT-SAEGGRSGWDDVGGLTDIQNAI------- 856 (1068)
Q Consensus 790 ~~a~~r~~~~-----~~~~~~~~~~~lt~edf~~Al~~~~P~slr~v~~~-~~~~~~~~~~~i~gl~~~k~~l------- 856 (1068)
..++++..+. +....+.....+...||..|+...+|+.-|..... .|... ...-+.+.......+
T Consensus 487 l~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~--~~~~ll~~~~~~~~iq~~~~va 564 (1080)
T KOG0732|consen 487 LIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLST--YLKPLLPFQDALEDIQGLMDVA 564 (1080)
T ss_pred hhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCc--ceecccchHHHHHHhhcchhHH
Confidence 9998875522 11112222344788999999999999887753322 22110 011111111111111
Q ss_pred ------HHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc-CCcEEEEecchhhhhh-ccccHHHHHH
Q 001491 857 ------KEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNKY-IGASEQAVRD 928 (1068)
Q Consensus 857 ------~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-g~~~i~v~~~el~~~~-~g~se~~l~~ 928 (1068)
.+...+..+.....-...+-.+..+++.|..|.|-+.+..++-+.+ +.+......+.++... .+..+..+..
T Consensus 565 ~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~ 644 (1080)
T KOG0732|consen 565 SSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVH 644 (1080)
T ss_pred hhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHH
Confidence 1111111110000001122234568889999999999999988776 7888777777777654 5566788999
Q ss_pred HHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEE
Q 001491 929 IFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 1008 (1068)
Q Consensus 929 lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~ 1008 (1068)
+|.+|+...|||+||-++|..+-. ..-.+...|+..++.......+..+-|-+.-. +..-. ..+.
T Consensus 645 i~~eaR~~~psi~~ip~~d~w~~~-------~p~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~---~~~~~-----~~~t 709 (1080)
T KOG0732|consen 645 IFMEARKTTPSIVFIPNVDEWARV-------IPVSFLEEFLSSLDEKALSTPILELHTWDTSF---ESVNK-----SVVT 709 (1080)
T ss_pred HHHHHhccCCceeeccchhhhhhc-------Ccchhhhcchhcchhhhhccchhhhccccccc---cccCc-----cccc
Confidence 999999999999999999876422 23445556665555333333343332221110 00011 2356
Q ss_pred cCCCCHHHHHHHHHHHHHhh
Q 001491 1009 CDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+..|+.+.+...++..+++.
T Consensus 710 ~~~p~~~s~~~ff~r~I~~~ 729 (1080)
T KOG0732|consen 710 LSKPSAESTGAFFKRLIRKI 729 (1080)
T ss_pred cccchhhhhHHHHHHHHHHH
Confidence 77888888888888888777
No 24
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-30 Score=289.04 Aligned_cols=244 Identities=21% Similarity=0.289 Sum_probs=207.3
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEE
Q 001491 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1068)
Q Consensus 548 ~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i 627 (1068)
....+|+++-|++++++++.+-+.-+.. +.-|..+|..-|+||||+||||||||+||||+|.+.+ .+|++.
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkd---P~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~------VPFF~~ 368 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKD---PTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG------VPFFYA 368 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcC---cHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC------CCeEec
Confidence 3466789999999999888776555554 4579999999999999999999999999999999988 889999
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCC
Q 001491 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1068)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1068)
..+++....+|...++++++|..|+.++|||+||||||.+.++|..... ....+.+++|+..||++....
T Consensus 369 sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~----~y~kqTlNQLLvEmDGF~qNe------ 438 (752)
T KOG0734|consen 369 SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ----HYAKQTLNQLLVEMDGFKQNE------ 438 (752)
T ss_pred cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH----HHHHHHHHHHHHHhcCcCcCC------
Confidence 9999999999999999999999999999999999999999765544322 144577888888999988653
Q ss_pred CcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHH
Q 001491 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1068)
Q Consensus 708 ~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1068)
.|+||++||.++.||++|.|||||++++.+|.||...|.+||+.++.+..+. .+.+...||+-|.||+|+||+++++.
T Consensus 439 -GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 439 -GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQ 516 (752)
T ss_pred -ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999864332 23357889999999999999999999
Q ss_pred HHHHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 788 a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
|+..|... ....+++.+++-|-..+
T Consensus 517 AAlkAa~d-----------ga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 517 AALKAAVD-----------GAEMVTMKHLEFAKDRI 541 (752)
T ss_pred HHHHHHhc-----------CcccccHHHHhhhhhhe
Confidence 98887654 22457888887665443
No 25
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-30 Score=279.73 Aligned_cols=260 Identities=21% Similarity=0.273 Sum_probs=215.8
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
....+++.|+..+++-+.+.+ ++...-+++|.....|. ++||++||||||||+||+|+|.+++ ..|+.|+.
T Consensus 208 ~ikW~DIagl~~AK~lL~EAV--vlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~------tTFFNVSs 278 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAV--VLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECG------TTFFNVSS 278 (491)
T ss_pred CcChHhhcchHHHHHHHHHHH--hhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhc------CeEEEech
Confidence 455778999999998888866 33334567888877666 6699999999999999999999998 78999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+..++.|+.++.++-+|+.|+.++|++|||||||.|++.|+.. ..++.++++...|+-.||+........ ..
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~---k~ 352 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENS---KV 352 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccc---ee
Confidence 999999999999999999999999999999999999999765543 456778899999999999987654321 24
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
|+|+|+||-|++||.+|+| ||...|++|.|+.+.|..+++..+..... .++..++.+++.++||+|+||.++|+.|.
T Consensus 353 VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~~~~~lae~~eGySGaDI~nvCreAs 429 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVEL-DDPVNLEDLAERSEGYSGADITNVCREAS 429 (491)
T ss_pred EEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccC-CCCccHHHHHHHhcCCChHHHHHHHHHHH
Confidence 8999999999999999999 99999999999999999999988875332 34556899999999999999999999999
Q ss_pred HHHHhhhcccCC-----ccc-cccccccchhhhhhhhcccccce
Q 001491 790 HAAVGRYLHSDS-----SFE-KHIKPTLVRDDFSQAMHEFLPVA 827 (1068)
Q Consensus 790 ~~a~~r~~~~~~-----~~~-~~~~~~lt~edf~~Al~~~~P~s 827 (1068)
+.+++|.+..-. ... ......++.+||+.|+....|+.
T Consensus 430 m~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 430 MMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred HHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 999998763211 011 11124488999999999988764
No 26
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=6.5e-30 Score=281.40 Aligned_cols=181 Identities=18% Similarity=0.270 Sum_probs=157.6
Q ss_pred CCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhc-----CCCeEEEEecCC
Q 001491 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFD 947 (1068)
Q Consensus 873 ~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~-----~~p~VLfiDEid 947 (1068)
.+++++.+++||||||||||.+|+++|+++|.+++.++++++.++|+|++|+.+|++|..|+. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 567889999999999999999999999999999999999999999999999999999999974 579999999999
Q ss_pred ccCCCCCCCCCCcchHHH-HHHHHhccCc------------cccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCH
Q 001491 948 SIAPKRGHDNTGVTDRVV-NQFLTELDGV------------EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSP 1014 (1068)
Q Consensus 948 ~l~~~r~~~~~~~~~~~~-~~lL~~Ld~~------------~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~ 1014 (1068)
+++++|+.....+..+++ .+|++.||+. ....+|+||+|||+|+.|||||+||||||+.| ..|+.
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 999999866666666665 8999999863 34567999999999999999999999999976 48999
Q ss_pred HHHHHHHHHHHHhh--------------ccCCCCCchhhHHHHHHHHHhhhhhcc
Q 001491 1015 RERLDILKVISRKV--------------CDTSIPFSSLFCNELLICKLWHFFMCV 1055 (1068)
Q Consensus 1015 ~~r~~Il~~~l~~~--------------~~~~id~~~l~~~~~~~~~l~~~~~~~ 1055 (1068)
++|.+|++.++++. -.+.+||.+....-.+.+++...+.+.
T Consensus 301 e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 301 EDRIGVVHGIFRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999887655 235699988877777777776666554
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-30 Score=270.72 Aligned_cols=187 Identities=33% Similarity=0.644 Sum_probs=177.3
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
+.+.|+++.|++..+++|+|++-+|.+++.+|... .+|.+++||||||||||+.||+++|.+.+..|++|+.++++++|
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 46899999999999999999999999999999863 46678999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccc-cCcEEEEEeCCCCCCCChhh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLDAAL 997 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~-~~~v~viatTn~~d~ld~al 997 (1068)
.|++|.-++++|+.|+..+|+|+||||||++.++|+...++..+|+..+||-+|+|+.. .++|+|+++||-|-.||.|+
T Consensus 207 mGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAI 286 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAI 286 (439)
T ss_pred hccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875 46899999999999999999
Q ss_pred cCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 998 LRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 998 ~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+| ||++.|+++.|....|..+|+..+...
T Consensus 287 RR--RFekRIYIPLPe~~AR~~MF~lhlG~t 315 (439)
T KOG0739|consen 287 RR--RFEKRIYIPLPEAHARARMFKLHLGDT 315 (439)
T ss_pred HH--HhhcceeccCCcHHHhhhhheeccCCC
Confidence 99 999999999999999999999887554
No 28
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.96 E-value=3e-29 Score=289.57 Aligned_cols=200 Identities=39% Similarity=0.660 Sum_probs=182.8
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
+...|++++|++..++.+.+.+++|+.+++.|...++.++.++||+||||||||++|+++|+.++.+|+.+.++++..+|
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKY 219 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHh
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCc---chHHHHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~---~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
+|.++..++++|..|+...||||||||+|.++++|.....+. ..+.+.+|+.+|+++....+++||+|||+++.|||
T Consensus 220 ~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 220 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 999999999999999999999999999999998875443332 34678899999998888889999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchh
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSL 1038 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l 1038 (1068)
|++||||||+.|+|++|+.++|.+||+.+++++ ....+|+..+
T Consensus 300 AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~l 343 (398)
T PTZ00454 300 ALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDF 343 (398)
T ss_pred HHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHH
Confidence 999999999999999999999999999999887 4455666443
No 29
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=2.7e-28 Score=305.85 Aligned_cols=455 Identities=15% Similarity=0.194 Sum_probs=285.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCC----ceeeeEEEE
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i 627 (1068)
.+..++|.+..+..+++.+ .+ ....+++|+||||||||++++.+|+.+.... .....++.+
T Consensus 185 ~ld~~iGr~~ei~~~i~~l---~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDIL---LR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCcccCCHHHHHHHHHHH---hc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3557788888766666543 11 1225689999999999999999999885332 122456777
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcc
Q 001491 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1068)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1068)
+.+.+. ..+.++++..++.++.++.. ..+.||||||+|.+.+.+... +.+ ...+.|...+..
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-~~~------d~~n~Lkp~l~~-------- 314 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-GQG------DAANLLKPALAR-------- 314 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-ccc------cHHHHhhHHhhC--------
Confidence 777765 35678888999999998864 467899999999998644321 111 122344444432
Q ss_pred cCCCcEEEEEecCCCC-----CCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhh----ccccCCHHHHHHHhhccCC
Q 001491 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (1068)
Q Consensus 705 ~~~~~V~vIattn~~~-----~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~----~~l~~~~~~l~~la~~t~g 775 (1068)
+.+.+|++|+..+ .++++|.| ||. .|.+++|+.+++.+||+.+... +++.++++++..++..+.+
T Consensus 315 ---G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 315 ---GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred ---CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 2589999998743 37999999 997 7999999999999997655433 4577899999999999988
Q ss_pred CCch-----hHHHHHHHHHHHHHhhhc-----------------------ccCCcc--ccc-------------------
Q 001491 776 YDAY-----DLEILVDRTVHAAVGRYL-----------------------HSDSSF--EKH------------------- 806 (1068)
Q Consensus 776 ~s~~-----DL~~Lv~~a~~~a~~r~~-----------------------~~~~~~--~~~------------------- 806 (1068)
|-+. -.-.+++.|+........ ..+... ...
T Consensus 389 yi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (852)
T TIGR03345 389 YIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAA 468 (852)
T ss_pred ccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7542 223444444322111000 000000 000
Q ss_pred --------------------------------------------------------cccccchhhhhhhhcccccceeec
Q 001491 807 --------------------------------------------------------IKPTLVRDDFSQAMHEFLPVAMRD 830 (1068)
Q Consensus 807 --------------------------------------------------------~~~~lt~edf~~Al~~~~P~slr~ 830 (1068)
....++.+|+.+.+...+..-...
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~ 548 (852)
T TIGR03345 469 LEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGR 548 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchh
Confidence 000011111111111111000000
Q ss_pred cccccc----CCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---C
Q 001491 831 ITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---S 903 (1068)
Q Consensus 831 v~~~~~----~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g 903 (1068)
+..... ......-..+.|+++..+.+.+.+...... ...+.++.+.+||+||+|||||.+|+++|..+ +
T Consensus 549 ~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g----l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~ 624 (852)
T TIGR03345 549 MVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAG----LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE 624 (852)
T ss_pred hchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 000000 000112345678888888777776542110 01123455569999999999999999999998 4
Q ss_pred CcEEEEecchhhhh------------hccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 904 LRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 904 ~~~i~v~~~el~~~------------~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
..++.++++++... |+|..+.. .+....+..+++||+|||++++ ++.+.+.|++.
T Consensus 625 ~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ 691 (852)
T TIGR03345 625 QNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQV 691 (852)
T ss_pred cceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHH
Confidence 57888998876432 44443322 2345556678899999999987 67889999999
Q ss_pred ccCcc---------ccCcEEEEEeCCCCC-----------------------------CCChhhcCCCCcceEEEcCCCC
Q 001491 972 LDGVE---------VLTGVFVFAATSRPD-----------------------------LLDAALLRPGRLDRLLFCDFPS 1013 (1068)
Q Consensus 972 Ld~~~---------~~~~v~viatTn~~d-----------------------------~ld~al~r~gRfd~~i~~~~p~ 1013 (1068)
||... .+.+.+||+|||... .+.|+|+. |++ +|.|.+++
T Consensus 692 ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs 768 (852)
T TIGR03345 692 FDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLD 768 (852)
T ss_pred hhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCC
Confidence 98543 246799999998421 14577777 997 89999999
Q ss_pred HHHHHHHHHHHHHhhcc----C-CCCCchhhHHHHHHHHHhhhhhcccccccccccc
Q 001491 1014 PRERLDILKVISRKVCD----T-SIPFSSLFCNELLICKLWHFFMCVSLNLSSYIIF 1065 (1068)
Q Consensus 1014 ~~~r~~Il~~~l~~~~~----~-~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1065 (1068)
.++..+|++..+..+.. . .+ .+...+.+..+|....+.....-|.+.++
T Consensus 769 ~e~l~~Iv~~~L~~l~~rl~~~~gi---~l~i~d~a~~~La~~g~~~~~GAR~L~r~ 822 (852)
T TIGR03345 769 DDVLAAIVRLKLDRIARRLKENHGA---ELVYSEALVEHIVARCTEVESGARNIDAI 822 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc---eEEECHHHHHHHHHHcCCCCCChHHHHHH
Confidence 99999999998877521 2 33 23345556666666665555555544443
No 30
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=9.2e-28 Score=302.89 Aligned_cols=422 Identities=18% Similarity=0.259 Sum_probs=282.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCC----ceeeeEEEE
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i 627 (1068)
.+..++|.+..++.+++.+. ...+.+++|+||||||||++++.+|..+.... .....++.+
T Consensus 177 ~~~~~igr~~ei~~~~~~L~---------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG---------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc---------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 35567889988888877542 12346799999999999999999999875321 123567788
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCccc
Q 001491 628 CCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1068)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1068)
+...+. ..+.|+.++.++.+++++....+.||||||+|.+++.+.. .+. . .+.+.|...+..
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~-~g~--~----~~a~lLkp~l~r--------- 305 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA-EGA--I----DAANILKPALAR--------- 305 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC-CCc--c----cHHHHhHHHHhC---------
Confidence 887765 3567888999999999998778899999999999864432 111 1 233444444432
Q ss_pred CCCcEEEEEecCCCC-----CCChhhhcCCcccccccCCCCCHHHHHHHHHHHHh----hccccCCHHHHHHHhhccCCC
Q 001491 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDGY 776 (1068)
Q Consensus 706 ~~~~V~vIattn~~~-----~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~----~~~l~~~~~~l~~la~~t~g~ 776 (1068)
+.+.+|++|+..+ ..++++.+ ||. .+.++.|+.++..+|++.... .+++.++++.+..++..+.+|
T Consensus 306 --g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 306 --GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred --CCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 2488999998754 36889999 997 579999999999999886443 245568999999888888877
Q ss_pred Cch-----hHHHHHHHHHHHHHhhhc--cc---------------------CCcc-------------------------
Q 001491 777 DAY-----DLEILVDRTVHAAVGRYL--HS---------------------DSSF------------------------- 803 (1068)
Q Consensus 777 s~~-----DL~~Lv~~a~~~a~~r~~--~~---------------------~~~~------------------------- 803 (1068)
.+. -.-.+++.|+........ +. ...+
T Consensus 381 i~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (821)
T CHL00095 381 IADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKK 460 (821)
T ss_pred CccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 233455555432211100 00 0000
Q ss_pred ----ccccccccchhhhhhhhcccccceeeccccccc----CCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCc
Q 001491 804 ----EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL 875 (1068)
Q Consensus 804 ----~~~~~~~lt~edf~~Al~~~~P~slr~v~~~~~----~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~ 875 (1068)
.......++.+|+.+.+...+..-...+..... ......-..+.|++++.+.+...+..... ....+-
T Consensus 461 ~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~----gl~~~~ 536 (821)
T CHL00095 461 TEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARV----GLKNPN 536 (821)
T ss_pred hhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhh----cccCCC
Confidence 000012355555555554433211111110000 00012235688999999888887753211 001123
Q ss_pred cccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhh-----h-------hccccHHHHHHHHHHHhcCCCeE
Q 001491 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-----K-------YIGASEQAVRDIFSKATAAAPCL 940 (1068)
Q Consensus 876 ~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~-----~-------~~g~se~~l~~lf~~a~~~~p~V 940 (1068)
+|...+||+||+|||||++|+++|+.+ +.+++.++++++.. + |+|..+ ...+...++..+.+|
T Consensus 537 ~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~V 614 (821)
T CHL00095 537 RPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTV 614 (821)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeE
Confidence 445678999999999999999999987 46788998887632 2 333322 234555666677799
Q ss_pred EEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc---------ccCcEEEEEeCCCCCC-------------------
Q 001491 941 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL------------------- 992 (1068)
Q Consensus 941 LfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~---------~~~~v~viatTn~~d~------------------- 992 (1068)
++|||+|++ ++.+.+.|++.|+... .+++++||+|||....
T Consensus 615 vllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~ 683 (821)
T CHL00095 615 VLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLS 683 (821)
T ss_pred EEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccc
Confidence 999999998 6789999999998532 2567999999985311
Q ss_pred ------------------CChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 993 ------------------LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 993 ------------------ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+.|+|+. |+|.+|.|.+.+.++..+|++..++++
T Consensus 684 ~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 684 EKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred cccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2356666 999999999999999999999998875
No 31
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-29 Score=257.46 Aligned_cols=246 Identities=20% Similarity=0.321 Sum_probs=210.1
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
....++++|++.+++++++.+ ++...+.+.|..+|+.||+|+|+|||||||||.+||+.|...+ +.|..+..
T Consensus 167 tE~YsDiGGldkQIqELvEAi--VLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~------aTFLKLAg 238 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAI--VLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN------ATFLKLAG 238 (424)
T ss_pred cccccccccHHHHHHHHHHHh--ccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc------chHHHhcc
Confidence 345789999999999999976 5566678899999999999999999999999999999999876 55666677
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
..+...+.|...+.+++.|..+...+|+|+||||+|.+..++-+.+.++..+.++.+++. ++.+|++.... .
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLEL-LNQLDGFss~~-------~ 310 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL-LNQLDGFSSDD-------R 310 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHH-HHhhcCCCCcc-------c
Confidence 778888888889999999999999999999999999999888888887776666666554 46677776543 4
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
|-+||+||+.+-++|+|.|+||.++.|+||.|+.+.|..|++.+.++.... ++..++.+|+.|++|+++..+.+|-+|-
T Consensus 311 vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 311 VKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred eEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehhhh
Confidence 999999999999999999999999999999999999999999776654432 3345999999999999999999999999
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
+.|++|. ...++.+||..++...
T Consensus 390 MiALRr~-----------atev~heDfmegI~eV 412 (424)
T KOG0652|consen 390 MIALRRG-----------ATEVTHEDFMEGILEV 412 (424)
T ss_pred HHHHhcc-----------cccccHHHHHHHHHHH
Confidence 9999883 2458889998876553
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=5.2e-29 Score=292.28 Aligned_cols=190 Identities=43% Similarity=0.745 Sum_probs=173.9
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc----------EEE
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FIS 908 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~----------~i~ 908 (1068)
+...|++|+|+++.++.+++.++++..++.+|...+++++.++|||||||||||++|+++|+.++.+ |+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999998654 667
Q ss_pred EecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCC-CCCcchHHHHHHHHhccCccccCcEEE
Q 001491 909 VKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFV 983 (1068)
Q Consensus 909 v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~-~~~~~~~~~~~lL~~Ld~~~~~~~v~v 983 (1068)
+++++++++|.|+++..++.+|..|+. ..||||||||+|+++++|+.+ +.....+++++||++||++...++++|
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViV 336 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIV 336 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEE
Confidence 888999999999999999999999875 379999999999999988653 344456788999999999998899999
Q ss_pred EEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 984 iatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+|||+++.||||++||||||.+|+|++|+.++|.+||+..+...
T Consensus 337 I~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~ 381 (512)
T TIGR03689 337 IGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS 381 (512)
T ss_pred EeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999988753
No 33
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=4.4e-29 Score=257.79 Aligned_cols=183 Identities=36% Similarity=0.614 Sum_probs=164.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
...+++++|+++.++..+-.++. ++.++.|..+. +.++|||||||||||++|+++|++...+++.++..++++.|+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 47899999999999876544432 34455565554 469999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCC-CCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhc
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH-DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 998 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~-~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~ 998 (1068)
|+....++++|++|+...|||+||||+|+++-.|.. ...|.-.+++|+||++|||.....+|+.||+||+|+.||+|++
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHH
Confidence 999999999999999999999999999999877643 3456667899999999999999999999999999999999999
Q ss_pred CCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 999 RPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 999 r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+ ||...|+|..|+.++|.+|++..++++
T Consensus 273 s--RFEeEIEF~LP~~eEr~~ile~y~k~~ 300 (368)
T COG1223 273 S--RFEEEIEFKLPNDEERLEILEYYAKKF 300 (368)
T ss_pred h--hhhheeeeeCCChHHHHHHHHHHHHhC
Confidence 8 999999999999999999999999998
No 34
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=252.64 Aligned_cols=245 Identities=22% Similarity=0.339 Sum_probs=208.2
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
.+..-++|++.++++|.+-+.. .-.++++|..+|+..|+|+|||||||+|||.||+++|.+.. ..|+.++.+
T Consensus 144 StYeMiGgLd~QIkeIkEVIeL--PvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~------c~firvsgs 215 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEVIEL--PVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSGS 215 (404)
T ss_pred cHHHHhccHHHHHHHHHHHHhc--cccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc------eEEEEechH
Confidence 3455678899999999987754 33478899999999999999999999999999999999866 889999999
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcE
Q 001491 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1068)
.+..++.|+....++++|-.|+.++|+|+|+||||++.+.+.+....++++.++.+++ |++.+|++.... ++
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmle-llnqldgfeatk-------ni 287 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLE-LLNQLDGFEATK-------NI 287 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHH-HHHhcccccccc-------ce
Confidence 9999999999999999999999999999999999999887777666655555555555 446677776543 59
Q ss_pred EEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 001491 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 711 ~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
-+|++||+.+-+|++|.|+||+++.++||+|+.+.|.+|++.+.++.++. ..-.+..+|+...|.++++++.+|.+|-+
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999776654432 11237899999999999999999999999
Q ss_pred HHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
.|++.. ...+|++||+-|....
T Consensus 367 ~alrer-----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 367 YALRER-----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred HHHHHh-----------hccccHHHHHHHHHHH
Confidence 988753 2568999999887664
No 35
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=253.07 Aligned_cols=246 Identities=20% Similarity=0.339 Sum_probs=209.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
+.+..+++|++-+++++.+.+...+ ...+++.+.|+.||+|+|+|||||||||+|++++|+... +.|+.+..
T Consensus 151 dvsy~diggld~qkqeireavelpl--t~~~ly~qigidpprgvllygppg~gktml~kava~~t~------a~firvvg 222 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPL--THADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT------AAFIRVVG 222 (408)
T ss_pred CccccccccchhhHHHHHHHHhccc--hHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc------hheeeecc
Confidence 4567899999999999999876544 367899999999999999999999999999999999876 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+..++.|+...+++++|+.++.++|+|+||||+|.++.++-+.+... ....++++-.|++.||++.... +
T Consensus 223 sefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtga-drevqril~ellnqmdgfdq~~-------n 294 (408)
T KOG0727|consen 223 SEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGA-DREVQRILIELLNQMDGFDQTT-------N 294 (408)
T ss_pred HHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccc-cHHHHHHHHHHHHhccCcCccc-------c
Confidence 9999999999999999999999999999999999999997776655443 3444555556677788876543 5
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
|-+|++||+.+.++|+|.|+||.++.++||.|+..+++-++.....+..+. ++.+++.+..+.+..+++|+..+|++|-
T Consensus 295 vkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqeag 373 (408)
T KOG0727|consen 295 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQEAG 373 (408)
T ss_pred eEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887765543 3445888999999999999999999999
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
+.|.+.. .-.+...||+++.+..
T Consensus 374 m~avr~n-----------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 374 MLAVREN-----------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred HHHHHhc-----------ceeeeHHHHHHHHHhh
Confidence 9988752 2457788898887654
No 36
>PF09262 PEX-1N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015342 This domain adopts a double psi beta-barrel fold, similar in structure to the Cdc48 N-terminal domain. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; GO: 0005524 ATP binding, 0007031 peroxisome organization, 0005777 peroxisome; PDB: 1WLF_A.
Probab=99.96 E-value=4.7e-30 Score=225.46 Aligned_cols=77 Identities=48% Similarity=0.830 Sum_probs=62.2
Q ss_pred ceEEEEecCCCchhHHHHhcHHHHHHHHhcccceecCCCEEeEEecCceEEEEEEeccCCCCC---eEEecCCCEEEEec
Q 001491 94 ATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKP---VVQLVPGTEVAVAP 170 (1068)
Q Consensus 94 ~~~v~veP~t~dDwEi~e~~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~---~~~l~~~tev~vap 170 (1068)
|++|+|||+|+|||||||+||+|||++||+|+|||++||+||||++++++++|+|.++.|++. ||||+++|||+|||
T Consensus 1 A~~V~veP~T~dDWEIlEl~A~~lE~~lL~QiRvv~~~~~~~v~v~~~~~i~~~V~~i~p~~~~~~~~~L~~~TEv~VaP 80 (80)
T PF09262_consen 1 AKSVEVEPLTSDDWEILELHAEFLEDQLLSQIRVVFPGQVFPVWVSQNTVIKFKVVSIEPSSSAEGCARLSPDTEVIVAP 80 (80)
T ss_dssp -SEEEEEESSHHHHHHHHHS-SSHHHHHHHH--EE-TT-EEEEESSSS-EEEEEEEEEES--S---SEE--TT-EEEE--
T ss_pred CcEEEEEcCCccHHHHHHHhHHHHHHHHHHhheeecCCCEEEEEEcCCeEEEEEEEEccCCCCceeEEEeCCCcEEEECC
Confidence 789999999999999999999999999999999999999999999999999999999999985 99999999999998
No 37
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-28 Score=284.07 Aligned_cols=261 Identities=22% Similarity=0.316 Sum_probs=214.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
+...++++|+++.+.+|.+.|...+ .++++|.. |+.+..|||||||||||||.+|||+|-++. ..|..+..
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL--~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcs------L~FlSVKG 738 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPL--KHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECS------LNFLSVKG 738 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcc--cChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhce------eeEEeecC
Confidence 4567899999999999999885533 24556655 455567799999999999999999999998 88889999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
.++...+.|+.++.++++|+.|+..+||||||||+|+++++|+...+++.- ..++..+|+..+|++.+... .+
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGV--MDRVVSQLLAELDgls~~~s-----~~ 811 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGV--MDRVVSQLLAELDGLSDSSS-----QD 811 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcccc--HHHHHHHHHHHhhcccCCCC-----Cc
Confidence 999999999999999999999999999999999999999988877665543 35888899999999875321 26
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCC-HHHHHHHHHHHHhhccccCCHHHHHHHhhcc-CCCCchhHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPA-ASERKAILEHEIQRRSLECSDEILLDVASKC-DGYDAYDLEILVDR 787 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~-~~er~~IL~~~l~~~~l~~~~~~l~~la~~t-~g~s~~DL~~Lv~~ 787 (1068)
|+|||+||+|+-|||+|+|||||+.-+++.+++ .+.+..||+..-++..++ .+..+..+|+.| ..|+|+|+-.+|..
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSd 890 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSD 890 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHH
Confidence 999999999999999999999999999998885 466778898877765443 223488888887 46999999999999
Q ss_pred HHHHHHhhhcccCC------ccccccccccchhhhhhhhcccccce
Q 001491 788 TVHAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1068)
Q Consensus 788 a~~~a~~r~~~~~~------~~~~~~~~~lt~edf~~Al~~~~P~s 827 (1068)
|...|++|....-. .........++++||.++++.+.|+-
T Consensus 891 A~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 891 AMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 99999998763211 11122346689999999999999864
No 38
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-27 Score=287.17 Aligned_cols=423 Identities=18% Similarity=0.231 Sum_probs=291.4
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc----eeeeEEE
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVF 626 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~ 626 (1068)
..+.-++|.+..+..+++-|.. ....+-+|.|+||+|||.++..+|........ ....++.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R---------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR---------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc---------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 3456678999988888775522 11244688899999999999999998864422 2356777
Q ss_pred Eeccccc--ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcc
Q 001491 627 VCCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1068)
Q Consensus 627 i~~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1068)
++...+. .++.|+.+.+++.++.+.....+.||||||+|.+.+......+ .- ...+.|...+..
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~----DAaNiLKPaLAR-------- 297 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AM----DAANLLKPALAR-------- 297 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--cc----chhhhhHHHHhc--------
Confidence 7877776 4677999999999999999888899999999999975443221 11 234445444433
Q ss_pred cCCCcEEEEEecCCCCC-----CChhhhcCCcccccccCCCCCHHHHHHHHHHHHh----hccccCCHHHHHHHhhccCC
Q 001491 705 CGIGPIAFVASAQSLEK-----IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDG 775 (1068)
Q Consensus 705 ~~~~~V~vIattn~~~~-----L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~----~~~l~~~~~~l~~la~~t~g 775 (1068)
|.+.+||+|+-.+. -|++|.| ||. .+.+..|+.++-..||+-+-. .+++.++++++...+..+..
T Consensus 298 ---GeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R 371 (786)
T COG0542 298 ---GELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR 371 (786)
T ss_pred ---CCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh
Confidence 24888988876331 3789999 999 789999999999999985433 35677899988887777655
Q ss_pred CCc-----hhHHHHHHHHHHHHHhhhc-ccC--------------------------Ccccc----------------cc
Q 001491 776 YDA-----YDLEILVDRTVHAAVGRYL-HSD--------------------------SSFEK----------------HI 807 (1068)
Q Consensus 776 ~s~-----~DL~~Lv~~a~~~a~~r~~-~~~--------------------------~~~~~----------------~~ 807 (1068)
|-. .-.-.+++.|+........ +.. ....+ ..
T Consensus 372 YI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 451 (786)
T COG0542 372 YIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELE 451 (786)
T ss_pred hcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHh
Confidence 533 2233455555433221100 000 00000 00
Q ss_pred ccccchhhhhhhhcccc--cce-eeccccccc-CCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEE
Q 001491 808 KPTLVRDDFSQAMHEFL--PVA-MRDITKTSA-EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLL 883 (1068)
Q Consensus 808 ~~~lt~edf~~Al~~~~--P~s-lr~v~~~~~-~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL 883 (1068)
. .++.+++...+...+ |.. +.......- ......-..+.|++++...+...+.... ..-..+.+|-+.+||
T Consensus 452 ~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraR----aGL~dp~rPigsFlF 526 (786)
T COG0542 452 A-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRAR----AGLGDPNRPIGSFLF 526 (786)
T ss_pred h-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHh----cCCCCCCCCceEEEe
Confidence 0 133344554444433 221 100000000 0112335568999999999888876431 112234466778999
Q ss_pred ECCCCCChhHHHHHHHHHcC---CcEEEEecchhhhh------------hccccHHHHHHHHHHHhcCCCeEEEEecCCc
Q 001491 884 YGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDS 948 (1068)
Q Consensus 884 ~GppGtGKT~lA~alA~~~g---~~~i~v~~~el~~~------------~~g~se~~l~~lf~~a~~~~p~VLfiDEid~ 948 (1068)
.||+|+|||.+|+++|..+. ..++.++++|+..+ |+|..+. ..+.+..+..++||++||||++
T Consensus 527 ~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 527 LGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred eCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhh
Confidence 99999999999999999986 78999999998754 5555442 3456666778889999999999
Q ss_pred cCCCCCCCCCCcchHHHHHHHHhccCcc---------ccCcEEEEEeCCCCC----------------------------
Q 001491 949 IAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPD---------------------------- 991 (1068)
Q Consensus 949 l~~~r~~~~~~~~~~~~~~lL~~Ld~~~---------~~~~v~viatTn~~d---------------------------- 991 (1068)
. ++.++|.||+.||... .+++.+||+|||--.
T Consensus 605 A-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~ 673 (786)
T COG0542 605 A-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKK 673 (786)
T ss_pred c-----------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHh
Confidence 8 7899999999998543 355799999998320
Q ss_pred CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 992 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 992 ~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.+.|+|++ |+|.+|.|.+.+.+...+|+..++.++
T Consensus 674 ~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 674 HFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred hCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 13577887 999999999999999999999999887
No 39
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-28 Score=291.52 Aligned_cols=249 Identities=20% Similarity=0.288 Sum_probs=215.6
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEE
Q 001491 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1068)
Q Consensus 548 ~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i 627 (1068)
+....|.++.|.++++++|.+.+.-+-+ ++.|..+|...|+|+||+||||||||.||+|+|.+.+ .+|+.+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKN---P~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg------VPF~sv 375 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKN---PEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG------VPFFSV 375 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcC---HHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC------Cceeee
Confidence 3456789999999999999998766665 5589999999999999999999999999999999988 899999
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCC
Q 001491 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1068)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1068)
+.+++.....+....+++++|..++.+.|+|+||||||.+...+............+..+++|+..||++....
T Consensus 376 SGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~------ 449 (774)
T KOG0731|consen 376 SGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK------ 449 (774)
T ss_pred chHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC------
Confidence 99999987777778889999999999999999999999998766421122233445577788888899886542
Q ss_pred CcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHH
Q 001491 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1068)
Q Consensus 708 ~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1068)
.|+++|+||+++-+|++|+|+|||+++++++.|+..+|.+|++.+++...+..++..+..+|..|.||+|+||.++|.+
T Consensus 450 -~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ne 528 (774)
T KOG0731|consen 450 -GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNE 528 (774)
T ss_pred -cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhH
Confidence 5999999999999999999999999999999999999999999999887776566678889999999999999999999
Q ss_pred HHHHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 788 a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
|...|.++. ...++..+|..|++..
T Consensus 529 aa~~a~r~~-----------~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 529 AALLAARKG-----------LREIGTKDLEYAIERV 553 (774)
T ss_pred HHHHHHHhc-----------cCccchhhHHHHHHHH
Confidence 999988762 2568889999988754
No 40
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.96 E-value=6.3e-28 Score=278.62 Aligned_cols=248 Identities=21% Similarity=0.337 Sum_probs=204.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.+++|++.+++++.+.+...+. ++.+|..+|+.+|+++|||||||||||++|+++|++++ .+++.+.+
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~--~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~~ 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLT--CPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVVG 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhc--CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEeh
Confidence 45688999999999999998865443 46789999999999999999999999999999999987 67788888
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+...+.+.....++++|..+...+|+||||||+|.+++.+.+...... .........|+..++.+... .+
T Consensus 213 s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d-~~~~r~l~~LL~~ld~~~~~-------~~ 284 (398)
T PTZ00454 213 SEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGAD-REVQRILLELLNQMDGFDQT-------TN 284 (398)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCcc-HHHHHHHHHHHHHhhccCCC-------CC
Confidence 88877778888888999999999999999999999999865544332222 22334444555666654432 25
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+.+|++||+++.+|+++.|+|||+..++++.|+.++|.+|++.++.+.++. .+..+..++..++||+++||+.+|.+|.
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999888765543 3345889999999999999999999999
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhccccc
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P 825 (1068)
+.|+++. ...++.+||.+|+.....
T Consensus 364 ~~A~r~~-----------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 364 MQAVRKN-----------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHcC-----------CCccCHHHHHHHHHHHHh
Confidence 9988762 246899999999887544
No 41
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=258.41 Aligned_cols=227 Identities=22% Similarity=0.328 Sum_probs=198.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
....+++.|++.+++.+.+.+ ++.-..+++|.....|. +++||||||||||+.||+++|-+.+ ..|+.++.
T Consensus 129 NVkWsDVAGLE~AKeALKEAV--ILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAn------STFFSvSS 199 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAV--ILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEAN------STFFSVSS 199 (439)
T ss_pred CCchhhhccchhHHHHHHhhe--eecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcC------CceEEeeh
Confidence 345678999999999999965 44555678888776665 6699999999999999999999987 67889999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+++..++.|+.++.+..+|+.|+.++|+|+||||||.+++.+.+.+ ++.++++...|+-.|.+....+. .
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE----seasRRIKTEfLVQMqGVG~d~~------g 269 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE----SEASRRIKTEFLVQMQGVGNDND------G 269 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc----hHHHHHHHHHHHHhhhccccCCC------c
Confidence 9999999999999999999999999999999999999998666543 34556777777777887665433 5
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
|+|+++||-|..||.+++| ||+..|++|.|....|..+++.++......+++.++..++..|+||+++|+..+|+.|.
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999999999 99999999999999999999998888888899999999999999999999999999999
Q ss_pred HHHHhhhc
Q 001491 790 HAAVGRYL 797 (1068)
Q Consensus 790 ~~a~~r~~ 797 (1068)
++-+++..
T Consensus 348 mePvRkvq 355 (439)
T KOG0739|consen 348 MEPVRKVQ 355 (439)
T ss_pred hhhHHHhh
Confidence 88877643
No 42
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-28 Score=287.05 Aligned_cols=198 Identities=34% Similarity=0.659 Sum_probs=180.8
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
..+.+.|+.|.++.++.+.|.+. .++.+..|...|.+.+.|+||+||||||||.||+++|.+.+.+|+++++++++..|
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 35789999999999999999887 46778888888889999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCC---CCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~---~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
+|-....+|++|.+|+...|||+||||+|++...|+.+. +..-...+||||.+||+.....+|+|+|+|||||-+|+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 999999999999999999999999999999998887542 22233579999999999999999999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCch
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSS 1037 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~ 1037 (1068)
||+||||||+.|.++.|+...|.+|++.+++++ ++..+|+..
T Consensus 304 ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~ 346 (596)
T COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK 346 (596)
T ss_pred hhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH
Confidence 999999999999999999999999999999887 556677644
No 43
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=8.9e-28 Score=282.71 Aligned_cols=244 Identities=21% Similarity=0.289 Sum_probs=202.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
..++.+++|++..++.+.+....+. .....+|+++|+|+|||||||||||++|+++|++++ .+++.+++
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~-----~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~------~~~~~l~~ 292 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS-----KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ------LPLLRLDV 292 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh-----HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEEEh
Confidence 4467899999998888876553321 234567899999999999999999999999999998 78899999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+.+.+.|..+..++.+|..+...+|+||||||+|.+++.+.... ......++...|+..++... .+
T Consensus 293 ~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~---d~~~~~rvl~~lL~~l~~~~---------~~ 360 (489)
T CHL00195 293 GKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG---DSGTTNRVLATFITWLSEKK---------SP 360 (489)
T ss_pred HHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC---CchHHHHHHHHHHHHHhcCC---------Cc
Confidence 9999999999999999999999999999999999999985332211 22234466666767666421 25
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhcccc-CCHHHHHHHhhccCCCCchhHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~-~~~~~l~~la~~t~g~s~~DL~~Lv~~a 788 (1068)
++||+|||+++.+|+++.|+|||+..++++.|+.++|.+|++.++.+.... ..+..+..+|..|+||+++||+.+|..|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875433 3456689999999999999999999999
Q ss_pred HHHHHhhhcccCCccccccccccchhhhhhhhccccccee
Q 001491 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAM 828 (1068)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P~sl 828 (1068)
.+.|..+ ...++.+||..|+..+.|.+.
T Consensus 441 ~~~A~~~------------~~~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 441 MYIAFYE------------KREFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred HHHHHHc------------CCCcCHHHHHHHHHhcCCCcc
Confidence 9888643 134899999999999999753
No 44
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.95 E-value=7.4e-28 Score=279.54 Aligned_cols=200 Identities=40% Similarity=0.691 Sum_probs=181.1
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
+...|++++|+++.++.+.+.+.++..++..|...++.++.++||+||||||||++|+++|+.++.+|+.++++++..+|
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF 205 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcc---hHHHHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT---DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~---~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
+|.++..++.+|..|+...||||||||+|.++++|+.+..+.. .+.+.+++.+|++....+++.||+|||+++.+|+
T Consensus 206 ~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~ 285 (389)
T PRK03992 206 IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDP 285 (389)
T ss_pred ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCH
Confidence 9999999999999999999999999999999988865443322 3567788888998888889999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchh
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSL 1038 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l 1038 (1068)
+++||||||+.|+|++|+.++|.+||+.+++++ ....+|+..+
T Consensus 286 allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~l 329 (389)
T PRK03992 286 AILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEEL 329 (389)
T ss_pred HHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHH
Confidence 999999999999999999999999999998877 3444665443
No 45
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-28 Score=264.21 Aligned_cols=233 Identities=22% Similarity=0.315 Sum_probs=202.6
Q ss_pred ccccccccccccchhHHHHHHHHHHHhcCCCcchhhhhc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEE
Q 001491 547 QGFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTY-HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV 625 (1068)
Q Consensus 547 ~~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~-~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~ 625 (1068)
..+..++.+++|++..++.+.+.+ .+...++.+|... -+.+++|||||||||||||++|+++|++.+ +.++
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~V--ilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag------a~fI 156 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELV--ILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG------ANFI 156 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHH--hhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC------CCcc
Confidence 356778999999999999998866 4444466777543 345778999999999999999999999988 8899
Q ss_pred EEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCccc
Q 001491 626 FVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1068)
Q Consensus 626 ~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1068)
.+..+.+.++++|+.++.+..+|..+..-+|+|+||||+|.+++.|. +..++....+.+.|...+|++..+...
T Consensus 157 nv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~-- 230 (386)
T KOG0737|consen 157 NVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSE-- 230 (386)
T ss_pred eeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCc--
Confidence 99999999999999999999999999999999999999999997662 445667778899999999998765442
Q ss_pred CCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHH
Q 001491 706 GIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILV 785 (1068)
Q Consensus 706 ~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv 785 (1068)
.|+|+|+||+|.++|.++.| |+...++++.|+..+|.+||+-+++...+. ++-++..+|..|+||+|+||+.+|
T Consensus 231 ---rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC 304 (386)
T KOG0737|consen 231 ---RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELC 304 (386)
T ss_pred ---eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHH
Confidence 49999999999999999999 999999999999999999999999876665 555699999999999999999999
Q ss_pred HHHHHHHHhhhccc
Q 001491 786 DRTVHAAVGRYLHS 799 (1068)
Q Consensus 786 ~~a~~~a~~r~~~~ 799 (1068)
..|.+..++.++..
T Consensus 305 ~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 305 RLAALRPIRELLVS 318 (386)
T ss_pred HHHhHhHHHHHHHh
Confidence 99999988877643
No 46
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.95 E-value=6.9e-28 Score=279.64 Aligned_cols=200 Identities=35% Similarity=0.615 Sum_probs=181.4
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
+...|++++|+++.++.+.+.+++++.++.+|...++.++.++||+||||||||++|+++|+.++.+|+.+.++++.++|
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcc---hHHHHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT---DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~---~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
.|..+..++.+|..|+...||||||||+|+++.+|.....+.. .+.+.+||.+||++....++.||+|||+++.||+
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 9999999999999999999999999999999988765433333 3567788899998887889999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchh
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSL 1038 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l 1038 (1068)
+++||||||+.|+|++|+.++|.+||+..+.++ ....+|+..+
T Consensus 338 aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~l 381 (438)
T PTZ00361 338 ALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEF 381 (438)
T ss_pred HhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHH
Confidence 999999999999999999999999999998887 4455665443
No 47
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-28 Score=258.42 Aligned_cols=189 Identities=39% Similarity=0.698 Sum_probs=173.8
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
...|+.++|+.+....+++.++.|+..+.+|.+.+++++.+++||||||+|||.+|+++|..+|.+|+-+..+++.++|+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHH---HHHHHHhccCccccCcEEEEEeCCCCCCCChh
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRV---VNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 996 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~---~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~a 996 (1068)
|++..-+|+.|..|+...|||+|+||+|++.++|....+.....+ +-.|+.+||+.....+|-+|+|||+||.||||
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 999999999999999999999999999999999854444444434 44567888888888999999999999999999
Q ss_pred hcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 997 l~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+||||+|+.++.+.|....|+.|++...+.+
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i 319 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPI 319 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccc
Confidence 99999999999999999999999887666655
No 48
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-28 Score=255.39 Aligned_cols=246 Identities=20% Similarity=0.333 Sum_probs=205.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
..++.+++|++.++++|.+.+.+ ...++++|...|+.||+||+|||+||||||.||+|+|+... +.|..+-.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvEL--PLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS------ATFlRvvG 252 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVEL--PLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS------ATFLRVVG 252 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcC--CCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc------hhhhhhhh
Confidence 45678999999999999997654 44578899999999999999999999999999999999876 77888889
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+++..++.|+..+.++++|+.|..++|+|+||||||.+..+|.+.......+.++.+++ |++.+|+|..+ ++
T Consensus 253 seLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLE-LLNQldGFdsr-------gD 324 (440)
T KOG0726|consen 253 SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE-LLNQLDGFDSR-------GD 324 (440)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHH-HHHhccCcccc-------CC
Confidence 99999999999999999999999999999999999999877766554444444444443 44556666543 46
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHH-HHHHHhhccCCCCchhHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~-~l~~la~~t~g~s~~DL~~Lv~~a 788 (1068)
|-||++||+.+.|||+|.|+||+++.|+|+.||...+..|+..+..+. .+.++ .++.+...-+.++++|++.+|.+|
T Consensus 325 vKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M--tl~~dVnle~li~~kddlSGAdIkAictEa 402 (440)
T KOG0726|consen 325 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM--TLAEDVNLEELIMTKDDLSGADIKAICTEA 402 (440)
T ss_pred eEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeeccc--chhccccHHHHhhcccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999999988655443 33333 478888888899999999999999
Q ss_pred HHHHHhhhcccCCccccccccccchhhhhhhhcccc
Q 001491 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1068)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~ 824 (1068)
-..|++... ..++.+||.+|.+...
T Consensus 403 GllAlRerR-----------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 403 GLLALRERR-----------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred hHHHHHHHH-----------hhccHHHHHHHHHHHH
Confidence 999887532 4589999999887643
No 49
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=3.3e-26 Score=289.53 Aligned_cols=457 Identities=15% Similarity=0.205 Sum_probs=281.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCC----ceeeeEEEE
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i 627 (1068)
.+..++|.+..+..+++.+ . .....+++|+||||+|||++++++|..+.... .....++.+
T Consensus 171 ~~~~~igr~~ei~~~~~~l----~-----------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVL----S-----------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCcCCCcHHHHHHHHHHH----h-----------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3456788888766665543 1 12235689999999999999999999874321 112567777
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcc
Q 001491 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1068)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1068)
+...+. ..+.+..++.+..++..+.. ..+.||||||+|.+.+.+... + . ....+.|...+..
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-~--~----~d~~~~Lk~~l~~-------- 300 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-G--A----MDAGNMLKPALAR-------- 300 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-c--h----hHHHHHhchhhhc--------
Confidence 777664 34667888889999988865 358999999999998533211 1 1 1233444433321
Q ss_pred cCCCcEEEEEecCCCC-----CCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhh----ccccCCHHHHHHHhhccCC
Q 001491 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (1068)
Q Consensus 705 ~~~~~V~vIattn~~~-----~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~----~~l~~~~~~l~~la~~t~g 775 (1068)
+.+.+|++|+..+ .+++++.+ ||. .+.++.|+.+++..|++.+... +++.+.++.+..++..+.+
T Consensus 301 ---g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~ 374 (852)
T TIGR03346 301 ---GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR 374 (852)
T ss_pred ---CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccc
Confidence 2589999998764 46999999 997 6899999999999999876554 3455778888888887777
Q ss_pred CCc-----hhHHHHHHHHHHHHHhhhc--c---------------------cCCcc-c----------------------
Q 001491 776 YDA-----YDLEILVDRTVHAAVGRYL--H---------------------SDSSF-E---------------------- 804 (1068)
Q Consensus 776 ~s~-----~DL~~Lv~~a~~~a~~r~~--~---------------------~~~~~-~---------------------- 804 (1068)
|.. .-.-.+++.|+........ + ..... .
T Consensus 375 yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (852)
T TIGR03346 375 YITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLE 454 (852)
T ss_pred cccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 2233445554432211000 0 00000 0
Q ss_pred ----c---------------------------------------------------------------ccccccchhhhh
Q 001491 805 ----K---------------------------------------------------------------HIKPTLVRDDFS 817 (1068)
Q Consensus 805 ----~---------------------------------------------------------------~~~~~lt~edf~ 817 (1068)
. .....++.+++.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~ 534 (852)
T TIGR03346 455 EQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIA 534 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHH
Confidence 0 000001111111
Q ss_pred hhhcccc--cce-eecccccc-cCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhH
Q 001491 818 QAMHEFL--PVA-MRDITKTS-AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTH 893 (1068)
Q Consensus 818 ~Al~~~~--P~s-lr~v~~~~-~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~ 893 (1068)
..+...+ |.. +....... ..........+.|++.+.+.+.+.+...... ...+.++...+||+||+|||||+
T Consensus 535 ~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g----l~~~~~p~~~~Lf~Gp~GvGKt~ 610 (852)
T TIGR03346 535 EVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG----LSDPNRPIGSFLFLGPTGVGKTE 610 (852)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc----CCCCCCCCeEEEEEcCCCCCHHH
Confidence 1111110 100 00000000 0000112445777777777777766532100 01123455679999999999999
Q ss_pred HHHHHHHHc---CCcEEEEecchhhh-----hhccccHH-----HHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCc
Q 001491 894 IVGAAAAAC---SLRFISVKGPELLN-----KYIGASEQ-----AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV 960 (1068)
Q Consensus 894 lA~alA~~~---g~~~i~v~~~el~~-----~~~g~se~-----~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~ 960 (1068)
+|+++|+.+ +.+++.++++++.. +++|.... ....+....+..+.+|||||||+++
T Consensus 611 lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka----------- 679 (852)
T TIGR03346 611 LAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA----------- 679 (852)
T ss_pred HHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------
Confidence 999999887 56899999877643 22222211 1123444455666789999999998
Q ss_pred chHHHHHHHHhccCcc---------ccCcEEEEEeCCCCCC-------------------------CChhhcCCCCcceE
Q 001491 961 TDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL-------------------------LDAALLRPGRLDRL 1006 (1068)
Q Consensus 961 ~~~~~~~lL~~Ld~~~---------~~~~v~viatTn~~d~-------------------------ld~al~r~gRfd~~ 1006 (1068)
++.+.+.|++.|+... .+++++||+|||.... +.|+|+. |||.+
T Consensus 680 ~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~I 757 (852)
T TIGR03346 680 HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEI 757 (852)
T ss_pred CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeE
Confidence 6789999999997432 2467889999997321 3466776 99999
Q ss_pred EEcCCCCHHHHHHHHHHHHHhhc----cCCCCCchhhHHHHHHHHHhhhhhccccccccccc
Q 001491 1007 LFCDFPSPRERLDILKVISRKVC----DTSIPFSSLFCNELLICKLWHFFMCVSLNLSSYII 1064 (1068)
Q Consensus 1007 i~~~~p~~~~r~~Il~~~l~~~~----~~~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 1064 (1068)
+.|.+++.++..+|+..++..+. ...+ .+...+.+...|....+....|.+.+-+
T Consensus 758 ivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~---~l~i~~~a~~~L~~~~~~~~~gaR~L~~ 816 (852)
T TIGR03346 758 VVFHPLGREQIARIVEIQLGRLRKRLAERKI---TLELSDAALDFLAEAGYDPVYGARPLKR 816 (852)
T ss_pred EecCCcCHHHHHHHHHHHHHHHHHHHHHCCC---eecCCHHHHHHHHHhCCCCCCCchhHHH
Confidence 99999999999999999987652 2222 2445666666666654433444444433
No 50
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=247.17 Aligned_cols=239 Identities=23% Similarity=0.322 Sum_probs=196.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
+.++++++|.+.++.++.=-+.-+-+|. . ++-=.|++||||||||||||++|+++|++.. .+++.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe---~---Fg~WAPknVLFyGppGTGKTm~Akalane~k------vp~l~vka 184 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPE---R---FGDWAPKNVLFYGPPGTGKTMMAKALANEAK------VPLLLVKA 184 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChH---H---hcccCcceeEEECCCCccHHHHHHHHhcccC------CceEEech
Confidence 4567889999998887754444444433 3 3344578999999999999999999999987 78899999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
..+.+..+|+....+.++++.|...+|||+||||+|.+.-.+.-. +... ....+.+.|+..||+..... .
T Consensus 185 t~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRG-DVsEiVNALLTelDgi~ene-------G 254 (368)
T COG1223 185 TELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRG-DVSEIVNALLTELDGIKENE-------G 254 (368)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--Hhcc-cHHHHHHHHHHhccCcccCC-------c
Confidence 999999999999999999999999999999999999997433221 1111 23477888888899877443 4
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHH-HHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE-ILVDRT 788 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~-~Lv~~a 788 (1068)
|+.||+||+++.||+++++ ||...|+|..|+.++|..|++.+++...+.++.. ++.++..+.|+|++||. .++..|
T Consensus 255 VvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 255 VVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred eEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999887776655 89999999999999986 567778
Q ss_pred HHHHHhhhcccCCccccccccccchhhhhhhhcccc
Q 001491 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1068)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~ 824 (1068)
.|.|+.. ....++.+|+..|++...
T Consensus 332 Lh~Ai~e-----------d~e~v~~edie~al~k~r 356 (368)
T COG1223 332 LHRAIAE-----------DREKVEREDIEKALKKER 356 (368)
T ss_pred HHHHHHh-----------chhhhhHHHHHHHHHhhc
Confidence 8888754 224588999999987643
No 51
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.95 E-value=5.2e-27 Score=272.46 Aligned_cols=250 Identities=23% Similarity=0.343 Sum_probs=203.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.+++|++.+++++.+.+...+. ++.+|..+|..+|+++|||||||||||++|+++|++++ ..++.+++
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~--~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~ 198 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLK--KPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 198 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC------CCEEEeeh
Confidence 34567999999999999998855332 56788999999999999999999999999999999987 67888999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+...+.+.....++.+|..+.++.|+||||||+|.+++.+.+...+..... ......|+..++.+... ++
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~-~~~l~~lL~~ld~~~~~-------~~ 270 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREV-QRTLMQLLAEMDGFDPR-------GN 270 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHH-HHHHHHHHHhccccCCC-------CC
Confidence 99988888888888999999999999999999999999876554333222222 23333344444543322 25
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+.||+|||.++.+++++.++|||+..+++++|+.++|.+|++.++.+..+. .+..+..++..|+||+++|++.+|++|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999888765443 2245889999999999999999999999
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhcccccce
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P~s 827 (1068)
+.|+++. ...++.+||.+|+....+..
T Consensus 350 ~~a~~~~-----------~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 350 MFAIRDD-----------RTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHcC-----------CCCcCHHHHHHHHHHHhccc
Confidence 9887652 24589999999998877654
No 52
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.1e-28 Score=262.71 Aligned_cols=198 Identities=35% Similarity=0.620 Sum_probs=182.1
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCC-ccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~-~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~ 917 (1068)
..+.|++++|++.+++.+.+.+-+|++++++|...+ +++..|+||+||||||||.+|+++|++.|.+|+.+.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 458899999999999999999999999999996544 5789999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCc--EEEEEeCCCCCCCCh
Q 001491 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG--VFVFAATSRPDLLDA 995 (1068)
Q Consensus 918 ~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~--v~viatTn~~d~ld~ 995 (1068)
|.|++++.++.+|.-|..-.|||+||||+|++...|+....+......++|...=||+...++ |+|++|||||..+|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999999655566667778999999999987665 999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchh
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSL 1038 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l 1038 (1068)
|++| ||.+.++++.|+..+|.+|++.++++- ++..+|+..+
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~i 288 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEI 288 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHH
Confidence 9999 999999999999999999999999877 6677887543
No 53
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-28 Score=270.76 Aligned_cols=193 Identities=38% Similarity=0.672 Sum_probs=168.0
Q ss_pred CCchhH-HHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC-cEEEEecchhhhhhccccH
Q 001491 846 VGGLTD-IQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-RFISVKGPELLNKYIGASE 923 (1068)
Q Consensus 846 i~gl~~-~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~-~~i~v~~~el~~~~~g~se 923 (1068)
+||++. .-+..+.+.....--++...+.|.+.-.|+|||||||||||.+||.++++++. +--.+|+++++++|+|++|
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE 302 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESE 302 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccH
Confidence 566654 33444555555455577788889988899999999999999999999999965 4566899999999999999
Q ss_pred HHHHHHHHHHhcC--------CCeEEEEecCCccCCCCCC--CCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCC
Q 001491 924 QAVRDIFSKATAA--------APCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 993 (1068)
Q Consensus 924 ~~l~~lf~~a~~~--------~p~VLfiDEid~l~~~r~~--~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~l 993 (1068)
.++|++|..|... .--|++|||+|+++.+||. +++++++.++||||.-|||++...+++||+-|||.|+|
T Consensus 303 ~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlI 382 (744)
T KOG0741|consen 303 ENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLI 382 (744)
T ss_pred HHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhH
Confidence 9999999988431 1239999999999999986 56899999999999999999999999999999999999
Q ss_pred ChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-----ccCCCCCchh
Q 001491 994 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-----CDTSIPFSSL 1038 (1068)
Q Consensus 994 d~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-----~~~~id~~~l 1038 (1068)
|.||+|||||.-.+++..|++..|++|++.+.+++ .+.++|+.++
T Consensus 383 DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~el 432 (744)
T KOG0741|consen 383 DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKEL 432 (744)
T ss_pred HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHH
Confidence 99999999999999999999999999999999998 5567888665
No 54
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.94 E-value=1.4e-25 Score=282.42 Aligned_cols=456 Identities=14% Similarity=0.201 Sum_probs=273.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc----eeeeEEEE
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~i 627 (1068)
.+..++|.+..+..+++-+ . .....+++|+||||||||++++++|..+..... ....++.+
T Consensus 176 ~l~~vigr~~ei~~~i~iL----~-----------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVL----Q-----------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCcCCCCHHHHHHHHHHH----h-----------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3556788888766665533 1 112256999999999999999999998853211 12567778
Q ss_pred eccccc--ccchhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcc
Q 001491 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1068)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1068)
+...+. ..+.+..++.++.+|.+... ..+.||||||+|.+.+.+.. .+ +. ...+.|...+..
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~-~~--~~----d~~~~lkp~l~~-------- 305 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-DG--AM----DAGNMLKPALAR-------- 305 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC-cc--ch----hHHHHhcchhhc--------
Confidence 777765 34668888889999987643 56889999999999864322 11 11 223334433321
Q ss_pred cCCCcEEEEEecCCCC-----CCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhh----ccccCCHHHHHHHhhccCC
Q 001491 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (1068)
Q Consensus 705 ~~~~~V~vIattn~~~-----~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~----~~l~~~~~~l~~la~~t~g 775 (1068)
+.+.+||+|+..+ .+++++.| ||. .+.++.|+.+++..|++.+... +++.++++.+...+..+++
T Consensus 306 ---g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r 379 (857)
T PRK10865 306 ---GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred ---CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc
Confidence 3589999999876 37999999 998 6889999999999999876543 3456677777666566655
Q ss_pred CCc-----hhHHHHHHHHHHHHHhh-------------h----------cccCCccc-----------------------
Q 001491 776 YDA-----YDLEILVDRTVHAAVGR-------------Y----------LHSDSSFE----------------------- 804 (1068)
Q Consensus 776 ~s~-----~DL~~Lv~~a~~~a~~r-------------~----------~~~~~~~~----------------------- 804 (1068)
|.. .....+++.++...-.. . ........
T Consensus 380 y~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~ 459 (857)
T PRK10865 380 YIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELE 459 (857)
T ss_pred cccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 11111222111100000 0 00000000
Q ss_pred -----------------------------------------------------------------cccccccchhhhhhh
Q 001491 805 -----------------------------------------------------------------KHIKPTLVRDDFSQA 819 (1068)
Q Consensus 805 -----------------------------------------------------------------~~~~~~lt~edf~~A 819 (1068)
......++.+|+...
T Consensus 460 eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~v 539 (857)
T PRK10865 460 EEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEV 539 (857)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHH
Confidence 000001122222222
Q ss_pred hcccccceeecccccc----cCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHH
Q 001491 820 MHEFLPVAMRDITKTS----AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIV 895 (1068)
Q Consensus 820 l~~~~P~slr~v~~~~----~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA 895 (1068)
+...+..-........ ..........+.|++.+.+.+...+...... ...+-++.+.+||+||+|||||++|
T Consensus 540 v~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~g----l~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 540 LARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAG----LSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhc----ccCCCCCCceEEEECCCCCCHHHHH
Confidence 2111110000000000 0000112345667777777777666532100 0012233457999999999999999
Q ss_pred HHHHHHc---CCcEEEEecchhhhh-----hccccHH-----HHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcch
Q 001491 896 GAAAAAC---SLRFISVKGPELLNK-----YIGASEQ-----AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962 (1068)
Q Consensus 896 ~alA~~~---g~~~i~v~~~el~~~-----~~g~se~-----~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~ 962 (1068)
+++|..+ +..++.++++++... .+|.... .-..+....+..+.+||||||++++ +.
T Consensus 616 ~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~ 684 (857)
T PRK10865 616 KALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HP 684 (857)
T ss_pred HHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CH
Confidence 9999886 457898998876432 2222111 0111223334455589999999988 57
Q ss_pred HHHHHHHHhccCc---------cccCcEEEEEeCCCC-------------------------CCCChhhcCCCCcceEEE
Q 001491 963 RVVNQFLTELDGV---------EVLTGVFVFAATSRP-------------------------DLLDAALLRPGRLDRLLF 1008 (1068)
Q Consensus 963 ~~~~~lL~~Ld~~---------~~~~~v~viatTn~~-------------------------d~ld~al~r~gRfd~~i~ 1008 (1068)
.+.+.|++.|+.. ...++.+||+|||.. ..+.|+|+. |+|.++.
T Consensus 685 ~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iiv 762 (857)
T PRK10865 685 DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVV 762 (857)
T ss_pred HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEe
Confidence 7899999988742 134567899999973 124578887 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhcc----CCCCCchhhHHHHHHHHHhhhhhcccccccccc
Q 001491 1009 CDFPSPRERLDILKVISRKVCD----TSIPFSSLFCNELLICKLWHFFMCVSLNLSSYI 1063 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il~~~l~~~~~----~~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 1063 (1068)
|.+++.++..+|++.++.++.. ..+. +...+.+..+|....+....+-|.+-
T Consensus 763 F~PL~~edl~~Iv~~~L~~l~~rl~~~gi~---l~is~~al~~L~~~gy~~~~GARpL~ 818 (857)
T PRK10865 763 FHPLGEQHIASIAQIQLQRLYKRLEERGYE---IHISDEALKLLSENGYDPVYGARPLK 818 (857)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCc---CcCCHHHHHHHHHcCCCccCChHHHH
Confidence 9999999999999999987622 2332 33455666666655544444444433
No 55
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=267.37 Aligned_cols=246 Identities=20% Similarity=0.319 Sum_probs=201.0
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
..++.+++|++.+++++.+.+...+ .++.+|..+++.+|.++|||||||||||++|+++|+++. ..++.+.+
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl--~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi~V~~ 250 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPL--THPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------ATFLRVVG 250 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhh--hCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CCEEEEec
Confidence 3567899999999999999886533 356789999999999999999999999999999999986 56778888
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+...+.+.....+..+|..+..+.|+||||||+|.++..+.+............+ ..|+..++.+... .+
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~l-l~LL~~Ldg~~~~-------~~ 322 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTM-LELLNQLDGFDSR-------GD 322 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHH-HHHHHHHhhhccc-------CC
Confidence 888888888888889999999999999999999999998655443322222233233 3444556655432 25
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+.||++||+++.+++++.|+|||+..++|+.|+.++|.+|++.++.+..+. .+..+..++..++||+++|++.+|..|.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~ 401 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAG 401 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999888765432 2335889999999999999999999999
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
..|.++. ...++.+||.+|+...
T Consensus 402 ~~Alr~~-----------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 402 LLALRER-----------RMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHhc-----------CCccCHHHHHHHHHHH
Confidence 9988762 2468999999998775
No 56
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.94 E-value=1.2e-26 Score=278.43 Aligned_cols=189 Identities=38% Similarity=0.718 Sum_probs=174.3
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
+...|++++|++++++.+.+.+.+ .+++..+...+.+++.++||+||||||||++|+++|+.++.+|+.++++++.+.|
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 457899999999999999998886 6788888888888899999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCC---CCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~---~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
.|.++..++++|..|+...||||||||+|.++++|+.+. .....+++++||.+||++....+++||+|||+++.||+
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~ 208 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDP 208 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCH
Confidence 999999999999999999999999999999998886532 22345789999999999988889999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+++||||||+.|+++.|+.++|.+|++.++++.
T Consensus 209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~ 241 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK 241 (495)
T ss_pred HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998775
No 57
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=238.83 Aligned_cols=245 Identities=20% Similarity=0.293 Sum_probs=205.0
Q ss_pred cccccccccchhHHHHHHHHHHH-hcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEe
Q 001491 550 DSNVSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~-ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~ 628 (1068)
+.+.++++|..++++++.+-+.. ++ +++.|..+|+.||+|+|+|||||||||.+||++|+... +.|+.+-
T Consensus 173 dvty~dvggckeqieklrevve~pll---~perfv~lgidppkgvllygppgtgktl~aravanrtd------acfirvi 243 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLL---HPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD------ACFIRVI 243 (435)
T ss_pred CcccccccchHHHHHHHHHHHhcccc---CHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC------ceEEeeh
Confidence 45678999999999999987754 44 56689999999999999999999999999999999876 8899999
Q ss_pred cccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCC
Q 001491 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1068)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1068)
.+.+..++.|+....++++|+.|+..+.||+|+||+|.+.+.+-+.......+.++.+++ |.+.+|++... +
T Consensus 244 gselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmle-li~qldgfdpr-------g 315 (435)
T KOG0729|consen 244 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLE-LINQLDGFDPR-------G 315 (435)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHH-HHHhccCCCCC-------C
Confidence 999999999999999999999999999999999999999887766554444444444444 44556666543 4
Q ss_pred cEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHH-HHHHhhccCCCCchhHHHHHHH
Q 001491 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI-LLDVASKCDGYDAYDLEILVDR 787 (1068)
Q Consensus 709 ~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~-l~~la~~t~g~s~~DL~~Lv~~ 787 (1068)
++-++++||+|+.|+|+|.|+||+++.++|..|+.+.|..|++.+.+. +.+..+. ++.+|+.|..-++++|+.+|.+
T Consensus 316 nikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvcte 393 (435)
T KOG0729|consen 316 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTE 393 (435)
T ss_pred CeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHH
Confidence 799999999999999999999999999999999999999999865543 4444443 7889999999999999999999
Q ss_pred HHHHHHhhhcccCCccccccccccchhhhhhhhcccc
Q 001491 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1068)
Q Consensus 788 a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~ 824 (1068)
|-+.|++... ...+..||..|+....
T Consensus 394 agmfairarr-----------k~atekdfl~av~kvv 419 (435)
T KOG0729|consen 394 AGMFAIRARR-----------KVATEKDFLDAVNKVV 419 (435)
T ss_pred hhHHHHHHHh-----------hhhhHHHHHHHHHHHH
Confidence 9988876421 4468889998876643
No 58
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.2e-26 Score=271.61 Aligned_cols=248 Identities=24% Similarity=0.351 Sum_probs=212.4
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.+++|++..++.+.+.+...+. .+..|...++.+++++|||||||||||++|+++|.+++ .+++.+..
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~--~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~ 309 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLK--RPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKG 309 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhh--ChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeC
Confidence 45677889999999998887755443 44567778899999999999999999999999999887 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+++.+++.|+.++.++.+|..|+..+|+||||||+|.+++.++...+.. ..++...|+..|+...... +
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~----~~r~~~~lL~~~d~~e~~~-------~ 378 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS----GRRVVGQLLTELDGIEKAE-------G 378 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH----HHHHHHHHHHHhcCCCccC-------c
Confidence 9999999999999999999999999999999999999997665433221 1467788888888765443 5
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhcccc-CCHHHHHHHhhccCCCCchhHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~-~~~~~l~~la~~t~g~s~~DL~~Lv~~a 788 (1068)
|++|++||.++.+|+++.|+|||+..+++++|+.++|.+|++.++...... ..+.++..+++.++||+++|+..+|++|
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea 458 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREA 458 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999865554 4456789999999999999999999999
Q ss_pred HHHHHhhhcccCCccccccccccchhhhhhhhcccccc
Q 001491 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1068)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P~ 826 (1068)
...+..+.. ...++.+||..|++...|+
T Consensus 459 ~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 459 ALEALREAR----------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHhc----------cCCccHHHHHHHHHhcCCC
Confidence 999987742 3568999999999987665
No 59
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=8.5e-26 Score=283.04 Aligned_cols=258 Identities=23% Similarity=0.325 Sum_probs=211.4
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
..+.+++|++..++.+.+.+...+ .++.++..++..+|+++|||||||||||++|+++|.+++ .+++.+.++
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~--~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~------~~fi~v~~~ 521 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPL--KHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG------ANFIAVRGP 521 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhh--hCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEehH
Confidence 457889999999999988765433 366788999999999999999999999999999999987 788999999
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcE
Q 001491 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1068)
++...+.|..++.++.+|..++...|+||||||+|.+++.++... .......+...|+..+++.... .++
T Consensus 522 ~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~~-------~~v 591 (733)
T TIGR01243 522 EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQEL-------SNV 591 (733)
T ss_pred HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccCC-------CCE
Confidence 999999999999999999999999999999999999987554322 2223456777788888875432 259
Q ss_pred EEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 001491 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 711 ~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
+||+|||+++.+|++++|+|||+..++++.|+.++|.+|++.+..+..+. ++..+..+|..|+||+++||+.+|++|..
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~ 670 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAM 670 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999777654332 33458999999999999999999999999
Q ss_pred HHHhhhcccCCc--cc-----cccccccchhhhhhhhcccccce
Q 001491 791 AAVGRYLHSDSS--FE-----KHIKPTLVRDDFSQAMHEFLPVA 827 (1068)
Q Consensus 791 ~a~~r~~~~~~~--~~-----~~~~~~lt~edf~~Al~~~~P~s 827 (1068)
.++++....... .. ......++.+||..|+....|+.
T Consensus 671 ~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 671 AALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred HHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 998875422110 00 11124689999999998887753
No 60
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.1e-26 Score=266.78 Aligned_cols=248 Identities=21% Similarity=0.329 Sum_probs=214.0
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEE
Q 001491 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1068)
Q Consensus 548 ~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i 627 (1068)
.....|.+..|.+++++++.+-+.-+..|. -|..+|...|+|+||+||||||||+|||++|.+.+ .++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~---ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~------VPFf~i 214 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPK---KYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSI 214 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCch---hhHhcccccccceeEecCCCCCcHHHHHHHhcccC------CCceec
Confidence 356678899999999999988776666544 68888999999999999999999999999999988 899999
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCC
Q 001491 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1068)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1068)
+.+++....++.-...++++|..+..++|||+||||+|.+...|+...+. .....++.+++|+..||++....
T Consensus 215 SGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg-gnderEQTLNQlLvEmDGF~~~~------ 287 (596)
T COG0465 215 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGGNE------ 287 (596)
T ss_pred cchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC-CchHHHHHHHHHHhhhccCCCCC------
Confidence 99999998888888999999999999999999999999998766555333 44566678888999999987432
Q ss_pred CcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHH
Q 001491 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1068)
Q Consensus 708 ~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1068)
.|+++++||+++-+|++|.|+|||++++.++.||...|.+|++.++.+..+. .+..+..+|+.|.||+++||.+++.+
T Consensus 288 -gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 288 -GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred -ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHH
Confidence 4999999999999999999999999999999999999999999887765554 33347779999999999999999999
Q ss_pred HHHHHHhhhcccCCccccccccccchhhhhhhhcccc
Q 001491 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1068)
Q Consensus 788 a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~ 824 (1068)
|...+.++. ...+++.+|..|.....
T Consensus 366 Aal~aar~n-----------~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 366 AALLAARRN-----------KKEITMRDIEEAIDRVI 391 (596)
T ss_pred HHHHHHHhc-----------CeeEeccchHHHHHHHh
Confidence 999888763 25688889988876643
No 61
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.9e-26 Score=278.07 Aligned_cols=216 Identities=36% Similarity=0.645 Sum_probs=193.9
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecch
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPE 913 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-----g~~~i~v~~~e 913 (1068)
..+.|+++||++.++..|+|++..|+-|++.|.+..+.++.++||+||||||||+.|+++|..| ...|+--++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 3578999999999999999999999999999999999999999999999999999999999998 34566778999
Q ss_pred hhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCC
Q 001491 914 LLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 993 (1068)
Q Consensus 914 l~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~l 993 (1068)
.+++|+|+.|..++.+|+.|+...|.|+||||||.++|.|..-+...+..++.+||..|||+...+.|+||+||||++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998777778889999999999999999999999999999999
Q ss_pred ChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhhc------------cC-----CCCCchhhHHHHHHHHHhhhhhcc
Q 001491 994 DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKVC------------DT-----SIPFSSLFCNELLICKLWHFFMCV 1055 (1068)
Q Consensus 994 d~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~~------------~~-----~id~~~l~~~~~~~~~l~~~~~~~ 1055 (1068)
|||++||||||+.++|+.|+.+.|.+|+....++-- .. .-| -...|.+++..++.+-|...
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaD-lkaLCTeAal~~~~r~~Pq~ 497 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGAD-LKALCTEAALIALRRSFPQI 497 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHH-HHHHHHHHhhhhhccccCee
Confidence 999999999999999999999999999998876541 11 122 23467777777776666543
No 62
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-25 Score=258.36 Aligned_cols=228 Identities=25% Similarity=0.257 Sum_probs=196.1
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
....+++|+.++++-+.+.+ .....+++.|....++.+.|+|||||||||||.||.++|...+ ..++.+...
T Consensus 664 i~w~digg~~~~k~~l~~~i--~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~------~~fisvKGP 735 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVI--EWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN------LRFISVKGP 735 (952)
T ss_pred CCceecccHHHHHHHHHHHH--hccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC------eeEEEecCH
Confidence 45678889888887777754 3455678899999999999999999999999999999999987 788888889
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcE
Q 001491 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1068)
++..++.|..++.++++|..|...+|||||+||+|++++.|+-.. .-...++.++|+..||+...- ..|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs----TGVTDRVVNQlLTelDG~Egl-------~GV 804 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS----TGVTDRVVNQLLTELDGAEGL-------DGV 804 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC----CCchHHHHHHHHHhhcccccc-------ceE
Confidence 999999999999999999999999999999999999997665322 223358888999999876543 359
Q ss_pred EEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 001491 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 711 ~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
.++|+|.+|+.+||+|.|+||+++.++-+.|+..+|.+|++.+.....+ -++.+++.+|..|+||+++||+.++..|..
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987664333 355679999999999999999999999998
Q ss_pred HHHhhhcc
Q 001491 791 AAVGRYLH 798 (1068)
Q Consensus 791 ~a~~r~~~ 798 (1068)
.|+.+.+.
T Consensus 884 ~avh~~l~ 891 (952)
T KOG0735|consen 884 AAVHEILK 891 (952)
T ss_pred HHHHHHHH
Confidence 88887653
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.93 E-value=2.6e-25 Score=257.27 Aligned_cols=199 Identities=43% Similarity=0.721 Sum_probs=177.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
+...|++++|+++.++.+.+.+.++..++..|...++.++.++||+||||||||++|+++|+.++.+|+.+.+.++..+|
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcc---hHHHHHHHHhccCccccCcEEEEEeCCCCCCCCh
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT---DRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~---~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
.|.....++.+|..++...|+||||||+|.++.++.....+.. .+.+.+++.+|++....+++.||+|||+++.+|+
T Consensus 197 ~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~ 276 (364)
T TIGR01242 197 IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDP 276 (364)
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCCh
Confidence 9999999999999999999999999999999887765433322 3456778888887777788999999999999999
Q ss_pred hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCch
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSS 1037 (1068)
Q Consensus 996 al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~ 1037 (1068)
+++||||||+.|+|+.|+.++|.+|++..++++ ....+|+..
T Consensus 277 al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~ 319 (364)
T TIGR01242 277 ALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEA 319 (364)
T ss_pred hhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHH
Confidence 999999999999999999999999999998776 233455543
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.93 E-value=2.1e-25 Score=267.74 Aligned_cols=247 Identities=21% Similarity=0.330 Sum_probs=200.1
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
..++.+++|.+..++++.+.+..+. .+..+...+..+|+++||+||||||||++|+++|++++ .+++.+++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~---~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~------~~~~~i~~ 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLK---NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSISG 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHH---CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCeeeccH
Confidence 4567899999999998887655433 34567778889999999999999999999999999987 77888998
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+.....+...+.++.+|..+....|+||||||+|.+...+...... ...........|+..++.+.... .
T Consensus 122 ~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~lL~~~d~~~~~~-------~ 193 (495)
T TIGR01241 122 SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGTNT-------G 193 (495)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC-ccHHHHHHHHHHHhhhccccCCC-------C
Confidence 888776667777889999999999999999999999998655432111 12233455666777777765432 4
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
++||++||.++.+|+++.|+|||+..++++.|+.++|.+|++.++...... ++..+..++..+.||+++||+.++++|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765443 4456889999999999999999999998
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhccccc
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P 825 (1068)
..+.++ ....++.+||..|+.....
T Consensus 273 ~~a~~~-----------~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 273 LLAARK-----------NKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHc-----------CCCCCCHHHHHHHHHHHhc
Confidence 776544 1245899999999887543
No 65
>CHL00176 ftsH cell division protein; Validated
Probab=99.93 E-value=6.1e-25 Score=266.41 Aligned_cols=245 Identities=20% Similarity=0.318 Sum_probs=199.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...|.+++|.+..++++.+.+..+.. +..|..++...|+++||+||||||||++|+++|++++ .++++++|
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~---~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~------~p~i~is~ 249 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKK---PERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE------VPFFSISG 249 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhC---HHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeeeccH
Confidence 35678999999999888776555433 4457788889999999999999999999999999987 78889999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+.....+.....++.+|..+....|+||||||+|.+...+....+. ........+..|+..++.+.... +
T Consensus 250 s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~e~~~~L~~LL~~~dg~~~~~-------~ 321 (638)
T CHL00176 250 SEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG-GNDEREQTLNQLLTEMDGFKGNK-------G 321 (638)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC-CcHHHHHHHHHHHhhhccccCCC-------C
Confidence 988766666666788999999999999999999999998655433222 22333456666777777665322 5
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+++|++||+++.+++++.|+|||+.+++++.|+.++|.+|++.++..... .++..+..+|..+.||+++||+.++++|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999886432 34557899999999999999999999998
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
..+.++ ....++.+||..|+...
T Consensus 401 l~a~r~-----------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 401 ILTARR-----------KKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHh-----------CCCCcCHHHHHHHHHHH
Confidence 777654 22458999999998775
No 66
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.92 E-value=1.5e-24 Score=254.87 Aligned_cols=252 Identities=18% Similarity=0.247 Sum_probs=184.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCC----ceeeeEEE
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVF 626 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~ 626 (1068)
.++.+++|++.+++.+.+.+...+ .++.+|..+++++|+++|||||||||||++|+++|+++.... .....++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~--~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPF--LHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHh--hCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 457889999999999999886533 256789999999999999999999999999999999986431 11234455
Q ss_pred EecccccccchhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccC
Q 001491 627 VCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (1068)
Q Consensus 627 i~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (1068)
+..+.+...+.+...+.++.+|..+.. ..|+||||||+|.+++.+.... +......+...|+..++.+...
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~---s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV---SSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc---cchHHHHHHHHHHHHhcccccC--
Confidence 666677777888888888888888765 3699999999999986554321 2223346677788888876532
Q ss_pred cccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHH----------HHHHHh--
Q 001491 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE----------ILLDVA-- 770 (1068)
Q Consensus 703 ~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~----------~l~~la-- 770 (1068)
+++++|++||+++.||+++.|+|||+.+|+|+.|+.++|.+|++.++... +.++++ .+..++
T Consensus 332 -----~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~~~g~~~a~~~al~~~ 405 (512)
T TIGR03689 332 -----DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAEFDGDREATAAALIQR 405 (512)
T ss_pred -----CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHHhcCCCHHHHHHHHHH
Confidence 25999999999999999999999999999999999999999999987642 222111 111111
Q ss_pred ---------------------------hccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 771 ---------------------------SKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 771 ---------------------------~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
..++.+||++++++|++|...|+.+.+.. ....++.+|+..|+..
T Consensus 406 av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-------~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 406 AVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-------GQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-------CCcCcCHHHHHHHHHH
Confidence 11345667777777777777776665411 1134667777776654
No 67
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.92 E-value=1.1e-24 Score=251.92 Aligned_cols=245 Identities=23% Similarity=0.336 Sum_probs=194.8
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.+++|++.+++++.+.+...+. ++..+..++..+|+++||+||||||||++|+++|+.++ .+++.+.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~--~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~ 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLK--HPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhc--CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC------CCEEecch
Confidence 34567899999999999998865332 45688899999999999999999999999999999987 56777777
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
..+...+.+.....+..+|..+....|+||||||+|.+...+.+...+...... .....++..++.+... ++
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~-~~l~~ll~~ld~~~~~-------~~ 261 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQ-RTLMQLLAELDGFDPR-------GN 261 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHH-HHHHHHHHHhhCCCCC-------CC
Confidence 777777777777888999999999999999999999998654433222222222 2333344444543321 25
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+.+|+|||.++.+++++.+++||+..++++.|+.++|.+|++.+.....+. .+..+..++..++||+++|+..+|.+|.
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887654432 2235889999999999999999999999
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
+.|+++. ...++.+||.+|+..
T Consensus 341 ~~a~~~~-----------~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 341 MFAIREE-----------RDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHhC-----------CCccCHHHHHHHHHH
Confidence 9987662 246899999998765
No 68
>CHL00176 ftsH cell division protein; Validated
Probab=99.92 E-value=3.6e-25 Score=268.40 Aligned_cols=188 Identities=39% Similarity=0.699 Sum_probs=171.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
...|++++|++++++.+.+.+.. ++.+..|...+.+.+.++||+||||||||++|+++|..++.+|+.++++++...+.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV 257 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence 46899999999999999988775 56777788888888899999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCC---CcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChh
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 996 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~---~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~a 996 (1068)
|.....++.+|..|+...||||||||+|.+..+|+.+.. ......+++||.+||+.....+++||+|||+++.+|+|
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~A 337 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAA 337 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhh
Confidence 998999999999999999999999999999988764322 22346789999999998888899999999999999999
Q ss_pred hcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 997 l~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
++||||||+.|.+++|+.++|.+|++.++++.
T Consensus 338 LlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~ 369 (638)
T CHL00176 338 LLRPGRFDRQITVSLPDREGRLDILKVHARNK 369 (638)
T ss_pred hhccccCceEEEECCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999998764
No 69
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=9.4e-25 Score=275.22 Aligned_cols=153 Identities=18% Similarity=0.261 Sum_probs=130.8
Q ss_pred hhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh----------cc----------------
Q 001491 867 PNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY----------IG---------------- 920 (1068)
Q Consensus 867 ~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~----------~g---------------- 920 (1068)
.....+.|.++++|+||+||||||||.||+++|.+++.+|+.+.+++++.++ +|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3445667788999999999999999999999999999999999999999755 12
Q ss_pred ---------------ccHH--HHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc---ccCc
Q 001491 921 ---------------ASEQ--AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---VLTG 980 (1068)
Q Consensus 921 ---------------~se~--~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~---~~~~ 980 (1068)
..+. .++.+|+.|++.+||||||||||+++++. .....+++|+.+||+.. ..++
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d------s~~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE------SNYLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc------cceehHHHHHHHhccccccCCCCC
Confidence 1222 37899999999999999999999997652 12234899999999764 4568
Q ss_pred EEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHH
Q 001491 981 VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS 1025 (1068)
Q Consensus 981 v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l 1025 (1068)
|+||||||+||.|||||+||||||+.|+++.|+..+|.+++..++
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl 1817 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLS 1817 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999988654
No 70
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=1.4e-24 Score=273.67 Aligned_cols=214 Identities=16% Similarity=0.180 Sum_probs=170.4
Q ss_pred hhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccc------------------------
Q 001491 581 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK------------------------ 636 (1068)
Q Consensus 581 l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~------------------------ 636 (1068)
...++|+.+|+||||+||||||||+||||+|.+.+ .+++.++++++....
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSY------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC------CceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 44678899999999999999999999999999988 788888887776422
Q ss_pred -----------------hhh--HHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001491 637 -----------------GPI--IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1068)
Q Consensus 637 -----------------~~~--~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1068)
.+. .+..++.+|+.|+..+||||||||||.+... + +. ...+.+|+..|++.
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~--d-----s~---~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN--E-----SN---YLSLGLLVNSLSRD 1764 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC--c-----cc---eehHHHHHHHhccc
Confidence 011 1234788999999999999999999999742 1 00 12356677777764
Q ss_pred ccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCH--HHHHHHhhccCC
Q 001491 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD--EILLDVASKCDG 775 (1068)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~--~~l~~la~~t~g 775 (1068)
... +...+|+||||||+|+.+||||+|+|||++.|+++.|+..+|.+++..++..+++.+.. ..+..+|+.|.|
T Consensus 1765 ~~~----~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1765 CER----CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred ccc----CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCC
Confidence 321 11236999999999999999999999999999999999999999988665544554443 247899999999
Q ss_pred CCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhccccc
Q 001491 776 YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1068)
Q Consensus 776 ~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P 825 (1068)
|+|+||+++|++|+..|+++ ....++.++|..|+.+.+.
T Consensus 1841 fSGADLanLvNEAaliAirq-----------~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1841 SNARDLVALTNEALSISITQ-----------KKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred CCHHHHHHHHHHHHHHHHHc-----------CCCccCHHHHHHHHHHHHh
Confidence 99999999999999999876 2356889999999988764
No 71
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.3e-24 Score=244.17 Aligned_cols=186 Identities=34% Similarity=0.589 Sum_probs=174.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
.+.|+++.|++.+++.+.+.+.||...+..|..+. .+..++||.||||+|||.|++++|.+++..|+.++.+.+.++|+
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~ 227 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV 227 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence 58999999999999999999999999999988765 34568999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccc--cCcEEEEEeCCCCCCCChhh
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LTGVFVFAATSRPDLLDAAL 997 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~--~~~v~viatTn~~d~ld~al 997 (1068)
|+++..++.+|.-|+..+|.|+||||+|+++.+|........++...++|-++++... .++|+||+|||+|..+|.|+
T Consensus 228 Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~ 307 (428)
T KOG0740|consen 228 GESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAA 307 (428)
T ss_pred ChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHH
Confidence 9999999999999999999999999999999999777788888999999999987653 45899999999999999999
Q ss_pred cCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 998 LRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 998 ~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+| ||.+.++++.|+.++|..+|+.++.+.
T Consensus 308 ~R--rf~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 308 RR--RFVKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred HH--HhhceeeecCCCHHHHHHHHHHHHHhC
Confidence 99 999999999999999999999999877
No 72
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.90 E-value=9.9e-24 Score=258.98 Aligned_cols=196 Identities=37% Similarity=0.680 Sum_probs=173.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
...|.++.|.+..++.+.+.+.+. +.+..+...+.+.+.++||+||||||||++|+++|+.++.+|+.++++++...|.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 367899999999999999988763 4455566666677788999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCC---CcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChh
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA 996 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~---~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~a 996 (1068)
|.....++++|..|+...||||||||+|.++.+|+.+.. ....+.+++||.+||++....+++||+|||+|+.||+|
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 999999999999999999999999999999988865322 22346899999999999988999999999999999999
Q ss_pred hcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCc
Q 001491 997 LLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFS 1036 (1068)
Q Consensus 997 l~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~ 1036 (1068)
++||||||+.|.|+.|+.++|.+|++.+++++ ....+|+.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~ 347 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAA 347 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHH
Confidence 99999999999999999999999999999887 44455543
No 73
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.9e-24 Score=226.12 Aligned_cols=244 Identities=19% Similarity=0.298 Sum_probs=192.3
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
-++++++|...++.++.+.+.+ ....+.+|...++.+|.+++||||||+|||.+|+++|..++ .+++.+..+
T Consensus 129 ~s~~~~ggl~~qirelre~iel--pl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg------~nfl~v~ss 200 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIEL--PLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG------VNFLKVVSS 200 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEe--eccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC------CceEEeeHh
Confidence 4577888998888888886633 33456799999999999999999999999999999999998 889999999
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcE
Q 001491 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1068)
.+...+.|+..+.+++.|..|..+.||++|+||||.+.+.+ ..++. ...+.+...|.++++++...+ ..+.|
T Consensus 201 ~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr-~se~T---s~dreiqrTLMeLlnqmdgfd----~l~rV 272 (388)
T KOG0651|consen 201 ALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR-FSEGT---SSDREIQRTLMELLNQMDGFD----TLHRV 272 (388)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE-ecccc---chhHHHHHHHHHHHHhhccch----hcccc
Confidence 99999999999999999999999999999999999998655 33332 222345555555555443322 23469
Q ss_pred EEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 001491 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 711 ~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
-+|+|+|+++.|+|+|.|+||+++.+++|.|+...|..|++...+.... +.+-..+.+.+..+||+++|+++.|.+|-.
T Consensus 273 k~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Geid~eaivK~~d~f~gad~rn~~tEag~ 351 (388)
T KOG0651|consen 273 KTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEIDDEAILKLVDGFNGADLRNVCTEAGM 351 (388)
T ss_pred cEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cccccHHHHHHHHhccChHHHhhhcccccc
Confidence 9999999999999999999999999999999999999998865443211 122236778888999999999999988875
Q ss_pred HHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
.++.. ....+..+||.+++..
T Consensus 352 Fa~~~-----------~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 352 FAIPE-----------ERDEVLHEDFMKLVRK 372 (388)
T ss_pred cccch-----------hhHHHhHHHHHHHHHH
Confidence 55432 1234667788777654
No 74
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.8e-23 Score=235.29 Aligned_cols=257 Identities=19% Similarity=0.249 Sum_probs=203.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.++.|++.+...+.+.+. +...++.+|..+. .+++++||.||||+|||+|++++|.+.+ +.+..+++
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi--~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~------atff~iSa 219 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVI--LPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG------ATFFNISA 219 (428)
T ss_pred cccccCCcchhhHHHHhhhhhh--hcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhc------ceEeeccH
Confidence 3456778888888888887653 3333455666654 4457899999999999999999999988 88999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+.+++.|+.++.++.+|.-|+..+|+|+||||+|.++..+.+.++..+. +...++|++. +...... -.+
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~sr---r~ktefLiq~-~~~~s~~-----~dr 290 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSR---RLKTEFLLQF-DGKNSAP-----DDR 290 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccch---hhhhHHHhhh-ccccCCC-----CCe
Confidence 999999999999999999999999999999999999999888665544332 2334444443 3322221 126
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
|++|+|||.|+.+|.+++| ||...+++|.|+.+.|..+++.++...+..+.+..+..+++.|+||++.|+..+|..|.
T Consensus 291 vlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~ 368 (428)
T KOG0740|consen 291 VLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAA 368 (428)
T ss_pred EEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 9999999999999999999 99999999999999999999999998877788899999999999999999999999998
Q ss_pred HHHHhhhccc--CCccccccccccchhhhhhhhcccccc
Q 001491 790 HAAVGRYLHS--DSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1068)
Q Consensus 790 ~~a~~r~~~~--~~~~~~~~~~~lt~edf~~Al~~~~P~ 826 (1068)
..-.+..... -........+.++..||..++....|.
T Consensus 369 ~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 369 MGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred cCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 7654443221 111222334567788888888776664
No 75
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.90 E-value=6.3e-23 Score=251.93 Aligned_cols=249 Identities=21% Similarity=0.278 Sum_probs=198.8
Q ss_pred cccccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEE
Q 001491 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1068)
Q Consensus 548 ~~~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i 627 (1068)
.+...+.++.|.+..++.+.+.+..... +..+..++...|+++||+||||||||+++++++++++ .+++.+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~---~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~------~~f~~i 216 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLRE---PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFTI 216 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhC---HHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCEEEE
Confidence 3455678888998888887775544332 3345666778888999999999999999999999987 778889
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCC
Q 001491 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1068)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1068)
+++++.....+.....++..|..+....|+||||||+|.+...+....+. .........+.|+..|+.+....
T Consensus 217 s~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g-~~~~~~~~ln~lL~~mdg~~~~~------ 289 (644)
T PRK10733 217 SGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEGNE------ 289 (644)
T ss_pred ehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC-CchHHHHHHHHHHHhhhcccCCC------
Confidence 99888776666667788899999999999999999999998655433222 22334466677777788765432
Q ss_pred CcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHH
Q 001491 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1068)
Q Consensus 708 ~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1068)
.+++|++||+++.+|+++.|++||+++++++.|+.++|.+|++.++.+..+. .+..+..+++.+.||+++||.++|++
T Consensus 290 -~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~e 367 (644)
T PRK10733 290 -GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNE 367 (644)
T ss_pred -CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998765442 22347789999999999999999999
Q ss_pred HHHHHHhhhcccCCccccccccccchhhhhhhhccccc
Q 001491 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1068)
Q Consensus 788 a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P 825 (1068)
|...|.++ ....++.+||..|+....+
T Consensus 368 Aa~~a~r~-----------~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 368 AALFAARG-----------NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHHc-----------CCCcccHHHHHHHHHHHhc
Confidence 99887754 2246889999998876544
No 76
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.89 E-value=5.7e-22 Score=218.94 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=151.8
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHh-----cCCeEE
Q 001491 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIV 659 (1068)
Q Consensus 585 ~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~-----~~PsIL 659 (1068)
.++.+|.+++||||||||||++|+++|++++ ..++.++..++.+.+.|+.++.++++|..|.. .+||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg------~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMG------IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC------CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 5688999999999999999999999999998 78999999999999999999999999999975 479999
Q ss_pred EEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc--ccCc---ccCCCcEEEEEecCCCCCCChhhhcCCcccc
Q 001491 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--KRKS---SCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (1068)
Q Consensus 660 fIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~--~~~~---~~~~~~V~vIattn~~~~L~~aL~~~gRF~~ 734 (1068)
||||||.+++.+... +.....+.+...|++++|.... .... ......|.||+|||+++.|+++|+|+|||+.
T Consensus 217 FIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk 293 (413)
T PLN00020 217 FINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (413)
T ss_pred EEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence 999999999766422 2222233445788888886321 0000 1123469999999999999999999999998
Q ss_pred cccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCC----CCchhHHHHHHHHHHHHH
Q 001491 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG----YDAYDLEILVDRTVHAAV 793 (1068)
Q Consensus 735 ~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g----~s~~DL~~Lv~~a~~~a~ 793 (1068)
.+ ..|+.++|.+|++.++++.+ ++...+..++..+.| |.++--..+.++++...+
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i 352 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWI 352 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 65 57999999999999888754 456778888877766 333333444444444433
No 77
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=9.7e-20 Score=179.06 Aligned_cols=130 Identities=43% Similarity=0.724 Sum_probs=118.4
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCC-CeEEEEecCCccCCCCCCCCCC
Q 001491 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNTG 959 (1068)
Q Consensus 881 lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~-p~VLfiDEid~l~~~r~~~~~~ 959 (1068)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+.+++.++++|..+.... |+||||||+|.+++..+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999999999999999999999998887 9999999999999887555666
Q ss_pred cchHHHHHHHHhccCcccc-CcEEEEEeCCCCCCCChhhcCCCCcceEEEcCC
Q 001491 960 VTDRVVNQFLTELDGVEVL-TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF 1011 (1068)
Q Consensus 960 ~~~~~~~~lL~~Ld~~~~~-~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~ 1011 (1068)
....++++|+..|+..... .+++||+|||+++.++++++| +||++.|+++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 6778899999999987765 569999999999999999998 89999999863
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=2.4e-19 Score=199.65 Aligned_cols=176 Identities=19% Similarity=0.279 Sum_probs=142.8
Q ss_pred CCCCCchhHHHHHHHHHHhccCCchhhhhhCCcc---ccceEEEECCCCCChhHHHHHHHHHc-------CCcEEEEecc
Q 001491 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGP 912 (1068)
Q Consensus 843 ~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~---~~~~lLL~GppGtGKT~lA~alA~~~-------g~~~i~v~~~ 912 (1068)
+.+++|++++|+.+.+.+.+. .+...+...++. ++.++||+||||||||++|+++|+.+ ..+++.++..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~-~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALL-LIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 457999999999999998773 344555555543 34579999999999999999999875 2368999999
Q ss_pred hhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCC-
Q 001491 913 ELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD- 991 (1068)
Q Consensus 913 el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d- 991 (1068)
++.+.|+|.++..++.+|++|.. +||||||+|.++..++ .......+++.|+..|+. ...+++||+|++..+
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN--QRDDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHH
Confidence 99999999999888899988754 4999999999975432 234567889999999984 345678888876432
Q ss_pred ----CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 992 ----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 992 ----~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.++|+|.+ ||+..|+|++|+.+++.+|++.++++.
T Consensus 174 ~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 174 DKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 24699999 999999999999999999999999886
No 79
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=3.4e-19 Score=198.51 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=144.1
Q ss_pred CCCchhHHHHHHHHHHhccCCchhhhhhCCcc---ccceEEEECCCCCChhHHHHHHHHHcC-------CcEEEEecchh
Q 001491 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISVKGPEL 914 (1068)
Q Consensus 845 ~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~---~~~~lLL~GppGtGKT~lA~alA~~~g-------~~~i~v~~~el 914 (1068)
.++|++++|+.+.+.+.+ ......+...++. ++.++||+||||||||++|+++|+.+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999999887 4566666666654 455899999999999999999998762 37999999999
Q ss_pred hhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC--CC
Q 001491 915 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP--DL 992 (1068)
Q Consensus 915 ~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~--d~ 992 (1068)
.+.|.|.++..++++|+.|.. +||||||++.+.+.++ ......++++.|++.|+. ...+++||++++.. +.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHH
Confidence 999999999899999998754 5999999999965432 234567888999999973 34677888887643 33
Q ss_pred ---CChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 993 ---LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 993 ---ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
++|+|.+ ||+..|.|++|+.+++..|++.++++.
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 5899999 999999999999999999999999986
No 80
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.4e-19 Score=193.20 Aligned_cols=188 Identities=23% Similarity=0.389 Sum_probs=153.5
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCC-ccccceEEEECCCCCChhHHHHHHHHHc---------CCcEEEEe
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAAC---------SLRFISVK 910 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~-~~~~~~lLL~GppGtGKT~lA~alA~~~---------g~~~i~v~ 910 (1068)
..|+.+.--..+|+.+..+....+.+.+--.+.. +...+-+||+||||||||+|++++|+.+ ...+++++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 4588777777888888877765544333222211 2234568999999999999999999887 34688999
Q ss_pred cchhhhhhccccHHHHHHHHHHHhc-----CCCeEEEEecCCccCCCCCC----CCCCcchHHHHHHHHhccCccccCcE
Q 001491 911 GPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGH----DNTGVTDRVVNQFLTELDGVEVLTGV 981 (1068)
Q Consensus 911 ~~el~~~~~g~se~~l~~lf~~a~~-----~~p~VLfiDEid~l~~~r~~----~~~~~~~~~~~~lL~~Ld~~~~~~~v 981 (1068)
...++++|.+++.+.+..+|++... +.-..++|||+++++..|.. ......-|++|++|++||++....+|
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 9999999999999999999988743 22246789999999888743 22333458999999999999999999
Q ss_pred EEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhhcc
Q 001491 982 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKVCD 1030 (1068)
Q Consensus 982 ~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~~~ 1030 (1068)
++++|+|-.+.||.||.. |-|-+.++++|+.+.|++|++.++..+..
T Consensus 299 liL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred EEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 999999999999999998 99999999999999999999999999843
No 81
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.9e-19 Score=196.61 Aligned_cols=179 Identities=20% Similarity=0.310 Sum_probs=151.1
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhcc
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g 920 (1068)
..++.+..-.+.++.+.+-+....+....|.+.|...++|.|||||||||||+++.|+|+.++++++-++..+..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 578888888899999999999999999999999999999999999999999999999999999999998877642
Q ss_pred ccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCC---C----cchHHHHHHHHhccCccccC--cEEEEEeCCCCC
Q 001491 921 ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT---G----VTDRVVNQFLTELDGVEVLT--GVFVFAATSRPD 991 (1068)
Q Consensus 921 ~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~---~----~~~~~~~~lL~~Ld~~~~~~--~v~viatTn~~d 991 (1068)
...+ ++.++..+... +||+|.+||+.+..++.... + ...-.+..||..+||+-+.. .-+||+|||..+
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2333 88888876444 69999999998775543221 1 12245788999999998776 689999999999
Q ss_pred CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 992 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 992 ~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
.|||||+||||+|.+|+++.=+.+.-..+++..+.-
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 999999999999999999999988877777766644
No 82
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=1e-18 Score=193.12 Aligned_cols=176 Identities=19% Similarity=0.283 Sum_probs=138.2
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCc---cccceEEEECCCCCChhHHHHHHHHHc-------CCcEEEEec
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL---RLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKG 911 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~---~~~~~lLL~GppGtGKT~lA~alA~~~-------g~~~i~v~~ 911 (1068)
.+++++|++++|+.+.+.+.|+..... ....+. ....+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEK-RKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 457899999999999999887644322 222333 234689999999999999999999874 347888999
Q ss_pred chhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCC
Q 001491 912 PELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 991 (1068)
Q Consensus 912 ~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d 991 (1068)
+++.++|+|+++..++++|.+|.. +||||||+|.+... +........++.|++.|+. ....+++++++...+
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~--~~~~~~vila~~~~~ 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMED--NRNEFVLILAGYSDE 154 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhccC---CEEEEechhhhccC---CccchHHHHHHHHHHHHhc--cCCCEEEEecCCcch
Confidence 999999999999999999988753 59999999999632 1222346788999999974 344555655554332
Q ss_pred -----CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 992 -----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 992 -----~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.++|++.+ ||+..|.|++|+.+++.+|++.+++..
T Consensus 155 ~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 155 MDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred hHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 27889998 999999999999999999999999764
No 83
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=5.5e-18 Score=187.32 Aligned_cols=222 Identities=18% Similarity=0.195 Sum_probs=157.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCC---CCceEEEEcCCCCcHHHHHHHHHHHhccCC-ceeeeEEEE
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLP---LPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFV 627 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~---~p~~vLL~GppGtGKTtLaraLA~~L~~~~-~~~~~~~~i 627 (1068)
.+++++|++.+++.+.+.+...... ......|.. ...++||+||||||||++|+++|+.+.... .....++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~---~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN---EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH---HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 4568899999998887765433211 111223332 345799999999999999999999874322 122467788
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCC
Q 001491 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1068)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1068)
+|+++.+.+.+.....+.++|..+. ++||||||+|.|.. ..+ ..........|...++....
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~---~~~----~~~~~~~i~~Ll~~~e~~~~-------- 142 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR---GGE----KDFGKEAIDTLVKGMEDNRN-------- 142 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc---CCc----cchHHHHHHHHHHHHhccCC--------
Confidence 9999988888887777888887653 57999999999952 111 11112345556666665432
Q ss_pred CcEEEEEecCCCC-----CCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc---------
Q 001491 708 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC--------- 773 (1068)
Q Consensus 708 ~~V~vIattn~~~-----~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t--------- 773 (1068)
++++|+++...+ .+++++.+ ||...++||+++.+++.+|++.++...+..++++.+..++...
T Consensus 143 -~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~ 219 (261)
T TIGR02881 143 -EFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSR 219 (261)
T ss_pred -CEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCC
Confidence 366666654422 36789998 9988899999999999999999999888888988877664321
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhc
Q 001491 774 DGYDAYDLEILVDRTVHAAVGRYL 797 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~~a~~r~~ 797 (1068)
..-+++.+.++++.|......|..
T Consensus 220 ~~gn~R~~~n~~e~a~~~~~~r~~ 243 (261)
T TIGR02881 220 EFSNARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHh
Confidence 224678899999998888777765
No 84
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=99.75 E-value=2.1e-18 Score=147.22 Aligned_cols=80 Identities=26% Similarity=0.430 Sum_probs=54.7
Q ss_pred eEEEEeCCcccceeeCCHHHHHHHhhccccCCCCceEEEEEEeCCCCeEEEEecCCcC----CCCceeecHhHHhhcCCC
Q 001491 3 LEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATS----SSSFIEVARQFAECISLA 78 (1068)
Q Consensus 3 ~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~~~~~~w~g~~s----~~~~iei~~~~a~~~gl~ 78 (1068)
+.|.|++ .||||++||++|++.|. +.|+++||++|+++.++|++|++.-+ +.+.+|||++||++|||+
T Consensus 4 vtv~f~n-~kdCFL~Lp~~l~~~L~-------L~q~qAvEvsWg~~~pvfLSW~e~r~~~~~~en~~EinrqlgeKLGl~ 75 (87)
T PF09263_consen 4 VTVVFNN-AKDCFLHLPSRLASQLH-------LQQNQAVEVSWGHQSPVFLSWVEGRSFSDQGENVAEINRQLGEKLGLS 75 (87)
T ss_dssp EEEEEE---SSS-EEE-HHHHHHTT---------TT--EEEESSS---EEE-EEE-SS-------EEEEEHHHHHHTT--
T ss_pred EEEEecC-CcceEEECCHHHHHHHH-------HhhCceEEEEeCCCCcEEEEeecccccCCccccHHHHHHHHHHhhCCC
Confidence 5677877 99999999999999998 46899999999997799999998543 248999999999999999
Q ss_pred CCCEEEEEEeec
Q 001491 79 DHTIVQVRVVSN 90 (1068)
Q Consensus 79 ~~~~v~~~~~~~ 90 (1068)
||++|++++|.+
T Consensus 76 dGeQvfLrpCs~ 87 (87)
T PF09263_consen 76 DGEQVFLRPCSH 87 (87)
T ss_dssp TT-EEEEEE-S-
T ss_pred cCCeEeeeeCCC
Confidence 999999999863
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=1.9e-17 Score=184.53 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=158.8
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCC---CceEEEEcCCCCcHHHHHHHHHHHhccCCc-eeeeEEEEecc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPL---PGHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFVCCS 630 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~---p~~vLL~GppGtGKTtLaraLA~~L~~~~~-~~~~~~~i~~s 630 (1068)
+++|++.+++.+.+.+..... ...+...|+.+ +.++||+||||||||++|+++|+.+..... ...+++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~---~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLV---ERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHH---HHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 578999988888775544322 23444555543 448999999999999999999998853221 12368888888
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcE
Q 001491 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1068)
++.+...+.....+..+|..+ .+++|||||++.+.+.+. ...........|...|+... .++
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~------~~~~~~~~~~~Ll~~le~~~---------~~~ 161 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN------ERDYGQEAIEILLQVMENQR---------DDL 161 (284)
T ss_pred HHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC------ccchHHHHHHHHHHHHhcCC---------CCE
Confidence 877666565555566677665 347999999999853211 11122355666777776432 247
Q ss_pred EEEEecCCC--C---CCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhc-------cCCCCc
Q 001491 711 AFVASAQSL--E---KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK-------CDGYDA 778 (1068)
Q Consensus 711 ~vIattn~~--~---~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~-------t~g~s~ 778 (1068)
++|++++.. + .+++++.+ ||...++||+++.+++.+|++.++.+.+..++++.+..++.+ ..-.++
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChH
Confidence 777776642 2 24789999 999999999999999999999999988888888877766554 223468
Q ss_pred hhHHHHHHHHHHHHHhhhcc
Q 001491 779 YDLEILVDRTVHAAVGRYLH 798 (1068)
Q Consensus 779 ~DL~~Lv~~a~~~a~~r~~~ 798 (1068)
+++++++++++.....|...
T Consensus 240 R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999988888653
No 86
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=2.3e-17 Score=183.79 Aligned_cols=222 Identities=16% Similarity=0.167 Sum_probs=155.4
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCC---ceEEEEcCCCCcHHHHHHHHHHHhccCCc-eeeeEEEEecc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLP---GHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFVCCS 630 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p---~~vLL~GppGtGKTtLaraLA~~L~~~~~-~~~~~~~i~~s 630 (1068)
+++|++.++++|.+.+..+.. ...+...|..++ .++||+||||||||++|+++|+.+..... ...+++.+++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~---~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLI---DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHH---HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 688999998888776543221 233444555433 45999999999999999999998753211 12457888888
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcE
Q 001491 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1068)
++.+.+.+........++..+ .++||||||+|.+...+. .. .........|...|+... .++
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~--~~----~~~~e~~~~L~~~me~~~---------~~~ 162 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDN--ER----DYGSEAIEILLQVMENQR---------DDL 162 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCC--cc----chHHHHHHHHHHHHhcCC---------CCE
Confidence 877666665555556666654 347999999999863211 11 122355666777776532 147
Q ss_pred EEEEecCCCC-----CCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhc------cCCC-Cc
Q 001491 711 AFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK------CDGY-DA 778 (1068)
Q Consensus 711 ~vIattn~~~-----~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~------t~g~-s~ 778 (1068)
++|++++... .++|++.+ ||+.+++|++|+.+++.+|++.++.+.+..++++....+... ...| ++
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNa 240 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANA 240 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccH
Confidence 7777775422 34689999 999999999999999999999999988888887765444332 1233 47
Q ss_pred hhHHHHHHHHHHHHHhhhccc
Q 001491 779 YDLEILVDRTVHAAVGRYLHS 799 (1068)
Q Consensus 779 ~DL~~Lv~~a~~~a~~r~~~~ 799 (1068)
++++++++++......|....
T Consensus 241 R~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 241 RSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998888887643
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.70 E-value=3.5e-16 Score=163.43 Aligned_cols=194 Identities=18% Similarity=0.271 Sum_probs=126.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
++.+++|.+..++.+.-.+..... ...+..|+|||||||+||||||+.+|++++ ..+...+...
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~----------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~------~~~~~~sg~~ 85 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKK----------RGEALDHMLFYGPPGLGKTTLARIIANELG------VNFKITSGPA 85 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHC----------TTS---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEECCC
T ss_pred CHHHccCcHHHHhhhHHHHHHHHh----------cCCCcceEEEECCCccchhHHHHHHHhccC------CCeEeccchh
Confidence 467788888877765444433221 122346899999999999999999999998 5566665543
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc-----ccC----
Q 001491 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRK---- 702 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~~---- 702 (1068)
+. ..+++...+.. . ....||||||||.+- ....+.|+..|+.+.- .+.
T Consensus 86 i~--k~~dl~~il~~----l--~~~~ILFIDEIHRln---------------k~~qe~LlpamEd~~idiiiG~g~~ar~ 142 (233)
T PF05496_consen 86 IE--KAGDLAAILTN----L--KEGDILFIDEIHRLN---------------KAQQEILLPAMEDGKIDIIIGKGPNARS 142 (233)
T ss_dssp ----SCHHHHHHHHT--------TT-EEEECTCCC-----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BE
T ss_pred hh--hHHHHHHHHHh----c--CCCcEEEEechhhcc---------------HHHHHHHHHHhccCeEEEEeccccccce
Confidence 32 22333333322 2 346799999999984 2566778888886541 111
Q ss_pred cccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHH
Q 001491 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1068)
Q Consensus 703 ~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~ 782 (1068)
......++.+|++|++...+.++|+. ||....++..++.++..+|++......++.++++....+|.++.| +|+=..
T Consensus 143 ~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 143 IRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIAN 219 (233)
T ss_dssp EEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHH
T ss_pred eeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHH
Confidence 12234579999999999999999999 999888999999999999999988888999999999999999998 565444
Q ss_pred HHHHH
Q 001491 783 ILVDR 787 (1068)
Q Consensus 783 ~Lv~~ 787 (1068)
+++++
T Consensus 220 rll~r 224 (233)
T PF05496_consen 220 RLLRR 224 (233)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 88
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.69 E-value=2.1e-16 Score=155.26 Aligned_cols=130 Identities=30% Similarity=0.486 Sum_probs=111.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcC-CeEEEEccchhhhcCC
Q 001491 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSS 671 (1068)
Q Consensus 593 vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~-PsILfIDEiD~L~~~~ 671 (1068)
+||+||||||||++++.+|+.++ .+++.+++..+.....+...+.+..+|..+.... |+||||||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------cccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 69999999999999999999997 8899999999998888889999999999998887 9999999999998644
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCC
Q 001491 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 739 (1068)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~ 739 (1068)
..........+.+.|...++...... .++.+|++||.++.+++.+.+ +||+..+++|
T Consensus 75 ----~~~~~~~~~~~~~~L~~~l~~~~~~~------~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 75 ----QPSSSSFEQRLLNQLLSLLDNPSSKN------SRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp ----STSSSHHHHHHHHHHHHHHHTTTTTS------SSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ----ccccccccccccceeeeccccccccc------ccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 22244455678888888888766542 259999999999999999997 7999988876
No 89
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=6.1e-16 Score=161.68 Aligned_cols=160 Identities=24% Similarity=0.379 Sum_probs=112.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
+..+++++|+++++..+.-.+...... -..-.|+|||||||+||||||+.+|++++.+|...+++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 368999999999999887665533111 01235899999999999999999999999999988876532
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccc----------------cCcEEE
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV----------------LTGVFV 983 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~----------------~~~v~v 983 (1068)
...++..++.... ...||||||||++ .+.+...|+..|+...- ..++.+
T Consensus 88 --k~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 --KAGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp --SCHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred --hHHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 1245555655543 4569999999999 67788889999975321 135889
Q ss_pred EEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 984 iatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+||.+..+|.++|+. ||.....+.+|+.++..+|++.-.+.+
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l 195 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARIL 195 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCT
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHh
Confidence 9999999999999998 999988999999999999999887776
No 90
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.1e-16 Score=172.88 Aligned_cols=179 Identities=23% Similarity=0.348 Sum_probs=137.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhcc
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g 920 (1068)
..+++++-...+.+.+.+......... ..+. +-+++|||||||||||.+|+-+|..+|+++-.+.+++.- ++-.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK--~h~a---pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~ 425 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTK--KHQA---PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGA 425 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccc--cccc---hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccch
Confidence 346677766677777765543211110 1112 335899999999999999999999999999999988853 3223
Q ss_pred ccHHHHHHHHHHHhcCC-CeEEEEecCCccCCCCCCCC-CCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhc
Q 001491 921 ASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDN-TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL 998 (1068)
Q Consensus 921 ~se~~l~~lf~~a~~~~-p~VLfiDEid~l~~~r~~~~-~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~ 998 (1068)
..-..+.++|++|...+ .-+|||||+|++...|.... ++..+..+|.||..-. ...+.++++.+||+|.++|.|+-
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~ 503 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVN 503 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHH
Confidence 34467899999997654 45899999999999886543 3345567899886543 45566777789999999999999
Q ss_pred CCCCcceEEEcCCCCHHHHHHHHHHHHHhhc
Q 001491 999 RPGRLDRLLFCDFPSPRERLDILKVISRKVC 1029 (1068)
Q Consensus 999 r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~~ 1029 (1068)
. |||.+|+|+.|..++|..++...+.+.+
T Consensus 504 D--Ride~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 504 D--RIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred h--hhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 8 9999999999999999999999998873
No 91
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.7e-16 Score=174.56 Aligned_cols=208 Identities=15% Similarity=0.208 Sum_probs=144.1
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
.+|..+.=-...+++|++.+..+.. +..+|.+.|.+..+|.|||||||||||+++.|+|++|+ ..++.++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k--~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~------ydIydLeLt 269 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIK--GKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN------YDIYDLELT 269 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHh--cchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC------CceEEeeec
Confidence 3455555344678888888877775 56899999999999999999999999999999999998 666666665
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCC----CCCchhHHHHHHHHHHHHHhhccccCcccC
Q 001491 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEG----SQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~----~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1068)
...... + ++.++... ...+||+|.|||+-+..+..... .+. ....-.+.-|++.+|++-....
T Consensus 270 ~v~~n~--d----Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~-~~~~VTlSGLLNfiDGlwSscg---- 336 (457)
T KOG0743|consen 270 EVKLDS--D----LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEG-DLSRVTLSGLLNFLDGLWSSCG---- 336 (457)
T ss_pred cccCcH--H----HHHHHHhC--CCCcEEEEeecccccccccccccccccccC-CcceeehHHhhhhhccccccCC----
Confidence 544332 2 34443333 45589999999997642222111 111 1111234446666666543221
Q ss_pred CCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCC--CCchhHHH
Q 001491 707 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG--YDAYDLEI 783 (1068)
Q Consensus 707 ~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g--~s~~DL~~ 783 (1068)
.--++|+|||.++.|||||.||||++.++++...+.++...++..++.... +...+..+.+..++ .+|+|+..
T Consensus 337 -~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 337 -DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred -CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHH
Confidence 136889999999999999999999999999999999999999988876532 23334444443333 36766643
No 92
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.2e-15 Score=165.07 Aligned_cols=186 Identities=19% Similarity=0.281 Sum_probs=131.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcC-CeEEEEccchh
Q 001491 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA-PSIVIFDNLDS 666 (1068)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~-PsILfIDEiD~ 666 (1068)
.+-++||||||||||||++|+.||+.-+ ..+-.....+..-.. ...-..+..+|+.+.... .-+|||||.|.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SG------lDYA~mTGGDVAPlG-~qaVTkiH~lFDWakkS~rGLllFIDEADA 454 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSG------LDYAIMTGGDVAPLG-AQAVTKIHKLFDWAKKSRRGLLLFIDEADA 454 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcC------CceehhcCCCccccc-hHHHHHHHHHHHHHhhcccceEEEehhhHH
Confidence 3447799999999999999999999876 223333333333222 222345788888887654 45889999999
Q ss_pred hhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHH
Q 001491 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 746 (1068)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er 746 (1068)
++..+....-+ ......|..+|.+.-+. . .+++++.+||+|.++|.++.. ||+..++||.|..++|
T Consensus 455 FLceRnktymS--EaqRsaLNAlLfRTGdq----S------rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEER 520 (630)
T KOG0742|consen 455 FLCERNKTYMS--EAQRSALNALLFRTGDQ----S------RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEER 520 (630)
T ss_pred HHHHhchhhhc--HHHHHHHHHHHHHhccc----c------cceEEEeccCCccchhHHHHh--hhhheeecCCCChHHH
Confidence 98766544322 11222333333332221 1 158999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhcc----------------------cc----CCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHh
Q 001491 747 KAILEHEIQRRS----------------------LE----CSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (1068)
Q Consensus 747 ~~IL~~~l~~~~----------------------l~----~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~ 794 (1068)
..++..++.++- +. ..+..+...|..|+||+|++|..|+-.....++.
T Consensus 521 fkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYg 594 (630)
T KOG0742|consen 521 FKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYG 594 (630)
T ss_pred HHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhc
Confidence 999998877532 11 2234577889999999999999998765554443
No 93
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.9e-14 Score=176.21 Aligned_cols=397 Identities=18% Similarity=0.230 Sum_probs=227.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCC----ceeeeEEEEeccccc--ccchhhHHHHHHHHHHHHH-hcCCeEEEEcc
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEAL-DHAPSIVIFDN 663 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i~~s~l~--~~~~~~~~~~l~~~f~~a~-~~~PsILfIDE 663 (1068)
++-+|+|.||+|||.++.-+|+...... .....++.++...+. ..+.++++..++.+..++. .....||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 5678999999999999999999876432 233556667766544 4566888999999998887 44567999999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCC-----CCChhhhcCCcccccccC
Q 001491 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQL 738 (1068)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~-----~L~~aL~~~gRF~~~i~l 738 (1068)
++.+.+.... + . .....+.|...+.. +.+.+|+||+... .-+|++-+ ||+ .+.+
T Consensus 289 lh~lvg~g~~-~---~---~~d~~nlLkp~L~r-----------g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v 347 (898)
T KOG1051|consen 289 LHWLVGSGSN-Y---G---AIDAANLLKPLLAR-----------GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLV 347 (898)
T ss_pred eeeeecCCCc-c---h---HHHHHHhhHHHHhc-----------CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEe
Confidence 9999864433 1 1 22344444443322 2378898887422 23788888 998 6788
Q ss_pred CCCCHHHHHHHHHHHHhh----ccccCCHHHHHHHhhc-----cCCCCchhHHHHHHHHHHHHHhhhc--c----c----
Q 001491 739 PAPAASERKAILEHEIQR----RSLECSDEILLDVASK-----CDGYDAYDLEILVDRTVHAAVGRYL--H----S---- 799 (1068)
Q Consensus 739 ~~P~~~er~~IL~~~l~~----~~l~~~~~~l~~la~~-----t~g~s~~DL~~Lv~~a~~~a~~r~~--~----~---- 799 (1068)
+.|+.+....||...-.. ++..+++..+...+.. +..+.+.-...++++|+........ + .
T Consensus 348 ~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~ 427 (898)
T KOG1051|consen 348 PIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERV 427 (898)
T ss_pred ccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhh
Confidence 899988777777755443 2232333222111111 1112222222223332211110000 0 0
Q ss_pred CC-----------ccc----------cccc--------------------------cccchhh-hhhhhcc--c------
Q 001491 800 DS-----------SFE----------KHIK--------------------------PTLVRDD-FSQAMHE--F------ 823 (1068)
Q Consensus 800 ~~-----------~~~----------~~~~--------------------------~~lt~ed-f~~Al~~--~------ 823 (1068)
.. ... .... ..+.... +.++... +
T Consensus 428 ~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l 507 (898)
T KOG1051|consen 428 DIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDL 507 (898)
T ss_pred hhhhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhc
Confidence 00 000 0000 0000000 0000000 0
Q ss_pred ------------------ccceeecccccccCCC----------------CCCCCCCCchhHHHHHHHHHHhccCCchhh
Q 001491 824 ------------------LPVAMRDITKTSAEGG----------------RSGWDDVGGLTDIQNAIKEMIELPSKFPNI 869 (1068)
Q Consensus 824 ------------------~P~slr~v~~~~~~~~----------------~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~ 869 (1068)
.|.....+.......+ ...-..+.|++++..++.+++......
T Consensus 508 ~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~g--- 584 (898)
T KOG1051|consen 508 RYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAG--- 584 (898)
T ss_pred cccccchhhhhhcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcc---
Confidence 0000000000000000 001223466666666666665543210
Q ss_pred hhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhh---------hhhccccHHHHHHHHHHHhcCC
Q 001491 870 FAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL---------NKYIGASEQAVRDIFSKATAAA 937 (1068)
Q Consensus 870 ~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~---------~~~~g~se~~l~~lf~~a~~~~ 937 (1068)
...+ .+...+||.||.|+|||.+|+++|..+ .-.|+.++++++. ..|+|..+.. .+.+..+..+
T Consensus 585 -l~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~LteavrrrP 660 (898)
T KOG1051|consen 585 -LKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAVKRRP 660 (898)
T ss_pred -cCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHHhcCC
Confidence 0011 356789999999999999999999887 4568899988632 2255655443 6677778888
Q ss_pred CeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc---------ccCcEEEEEeCCCCCC----------------
Q 001491 938 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL---------------- 992 (1068)
Q Consensus 938 p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~---------~~~~v~viatTn~~d~---------------- 992 (1068)
.+|++|||||.. +..+++.|++.||..+ .+++++||+|+|....
T Consensus 661 ~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~ 729 (898)
T KOG1051|consen 661 YSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMD 729 (898)
T ss_pred ceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccch
Confidence 899999999998 6789999999998654 3457999999774211
Q ss_pred ------------------------CChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 993 ------------------------LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 993 ------------------------ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
..|.+++ |.|..+.|.+.+.++..+|....+...
T Consensus 730 ~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~n--rid~i~lf~~l~~~~~~~i~~~~~~e~ 787 (898)
T KOG1051|consen 730 EKRGSYRLKKVQVSDAVRIYNKQFFRKEFLN--RIDELDLNLPLDRDELIEIVNKQLTEI 787 (898)
T ss_pred hhhhhhhhhhhhhhhhhhcccccccChHHhc--ccceeeeecccchhhHhhhhhhHHHHH
Confidence 1233333 788888888888777666666555443
No 94
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.66 E-value=9e-16 Score=193.30 Aligned_cols=202 Identities=22% Similarity=0.254 Sum_probs=147.6
Q ss_pred CCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhh--------
Q 001491 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------- 915 (1068)
Q Consensus 844 ~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~-------- 915 (1068)
+++.|++++++.+.+++...... +...+.++||+||||||||++|+++|+.++.+++.++.....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999999876643211 111234799999999999999999999999999998765432
Q ss_pred -hhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCc-------------cccCcE
Q 001491 916 -NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-------------EVLTGV 981 (1068)
Q Consensus 916 -~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~-------------~~~~~v 981 (1068)
..|+|.....+.+.|..+....| |+||||||++.+...+ ...+.|+..||.. ....++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-------DPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-------CHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 35788888888889998876666 8999999999753221 2356777777631 112578
Q ss_pred EEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh--ccCCCCCchhhHHHHHHHHHhhhhhcccccc
Q 001491 982 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV--CDTSIPFSSLFCNELLICKLWHFFMCVSLNL 1059 (1068)
Q Consensus 982 ~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~--~~~~id~~~l~~~~~~~~~l~~~~~~~~~~~ 1059 (1068)
++|+|||.++.|+++|++ ||+ +|.|+.|+.+++..|++..+.+. ....++-.++...+.+..++.+ .+.++-++
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~ 540 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIK-YYTREAGV 540 (775)
T ss_pred EEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCC
Confidence 999999999999999999 995 78999999999999998876433 2233444445556666666666 34555555
Q ss_pred ccccc
Q 001491 1060 SSYII 1064 (1068)
Q Consensus 1060 ~~~~~ 1064 (1068)
|++.+
T Consensus 541 R~l~r 545 (775)
T TIGR00763 541 RNLER 545 (775)
T ss_pred hHHHH
Confidence 55443
No 95
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.6e-15 Score=160.81 Aligned_cols=244 Identities=19% Similarity=0.224 Sum_probs=164.4
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcC-----CCCCceEEEEcCCCCcHHHHHHHHHHHhccC---Cceee
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYH-----LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDLVA 622 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~-----~~~p~~vLL~GppGtGKTtLaraLA~~L~~~---~~~~~ 622 (1068)
.-.++++--...++++..+....+. |...+ +...+-+||+||||||||+|++++|+.|.-+ .-...
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~------fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~ 212 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALL------FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKG 212 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHH------HHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccc
Confidence 3344555445567777776633221 22222 2335669999999999999999999998622 22236
Q ss_pred eEEEEecccccccchhhHHHHHHHHHHHHHh---cCC--eEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001491 623 HIVFVCCSRLSLEKGPIIRQALSNFISEALD---HAP--SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1068)
Q Consensus 623 ~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~---~~P--sILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1068)
..+.++|..+..+++++..+.+..+|+.... ... -.++|||+++|...|........+....++.+.++..+|++
T Consensus 213 ~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl 292 (423)
T KOG0744|consen 213 QLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL 292 (423)
T ss_pred eEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh
Confidence 6888999999999998888887777776543 222 25678999999876533322223333457788888999987
Q ss_pred ccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhc---cccCC------------
Q 001491 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR---SLECS------------ 762 (1068)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~---~l~~~------------ 762 (1068)
... .+|++++|+|-.+.+|.++.. |-+..+++.+|+.+.+.+|++..+... ++-..
T Consensus 293 K~~-------~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~ 363 (423)
T KOG0744|consen 293 KRY-------PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIK 363 (423)
T ss_pred ccC-------CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhH
Confidence 654 369999999999999999999 889899999999999999999776531 21111
Q ss_pred -HHH-HHHHhhc-cCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 763 -DEI-LLDVASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 763 -~~~-l~~la~~-t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
.+. ...++.. +.|.+||.|+.+---| |..+.+ ...++.++|..|+..
T Consensus 364 ~~~~~~~~~~~~~~~gLSGRtlrkLP~La-ha~y~~------------~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 364 YQKALRNILIELSTVGLSGRTLRKLPLLA-HAEYFR------------TFTVDLSNFLLALLE 413 (423)
T ss_pred hhHhHHHHHHHHhhcCCccchHhhhhHHH-HHhccC------------CCccChHHHHHHHHH
Confidence 011 1222222 4889999888765433 222211 145777777766543
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.8e-14 Score=152.85 Aligned_cols=200 Identities=20% Similarity=0.305 Sum_probs=145.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
.+.+.+|.+..++.+.=.+... +.......|+||+||||.||||||+.+|++++ ..+...+...
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AA----------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg------vn~k~tsGp~ 87 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAA----------KKRGEALDHVLLFGPPGLGKTTLAHIIANELG------VNLKITSGPA 87 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHH----------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc------CCeEeccccc
Confidence 3567778877666654444332 22244557999999999999999999999998 3333222222
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-----ccc----C
Q 001491 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-----EKR----K 702 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-----~~~----~ 702 (1068)
....+++...+..+ ...+||||||||.+.+ .+-+.|...|+.|. .++ .
T Consensus 88 --leK~gDlaaiLt~L------e~~DVLFIDEIHrl~~---------------~vEE~LYpaMEDf~lDI~IG~gp~Ars 144 (332)
T COG2255 88 --LEKPGDLAAILTNL------EEGDVLFIDEIHRLSP---------------AVEEVLYPAMEDFRLDIIIGKGPAARS 144 (332)
T ss_pred --ccChhhHHHHHhcC------CcCCeEEEehhhhcCh---------------hHHHHhhhhhhheeEEEEEccCCccce
Confidence 22333333333221 3457999999999952 45567778887764 111 1
Q ss_pred cccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHH
Q 001491 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1068)
Q Consensus 703 ~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~ 782 (1068)
-.....++.+|++|++...+...|+. ||+...++..++.++..+|+.......++.++++....+|++..| +|+=..
T Consensus 145 v~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAn 221 (332)
T COG2255 145 IRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIAN 221 (332)
T ss_pred EeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHH
Confidence 23345689999999999999999999 999999999999999999999998888999999999999999988 676666
Q ss_pred HHHHHHHHHHH
Q 001491 783 ILVDRTVHAAV 793 (1068)
Q Consensus 783 ~Lv~~a~~~a~ 793 (1068)
.+++|..-.|.
T Consensus 222 RLLrRVRDfa~ 232 (332)
T COG2255 222 RLLRRVRDFAQ 232 (332)
T ss_pred HHHHHHHHHHH
Confidence 66666655554
No 97
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=2.7e-14 Score=163.18 Aligned_cols=218 Identities=17% Similarity=0.249 Sum_probs=149.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
.+.+++|.+..++.+...+...... ..++.++||+||||||||++|+++|++++ ..+..++...
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG~GKT~la~~ia~~l~------~~~~~~~~~~ 86 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKR----------GEALDHVLLYGPPGLGKTTLANIIANEMG------VNIRITSGPA 86 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCCccHHHHHHHHHHHhC------CCeEEEeccc
Confidence 4678889998888776655332211 23457899999999999999999999987 3333343332
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc-----cc----C
Q 001491 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KR----K 702 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~----~ 702 (1068)
+. ..+. +..++... ..+++|||||+|.+.. ...+.|...++.... .. .
T Consensus 87 ~~--~~~~----l~~~l~~l--~~~~vl~IDEi~~l~~---------------~~~e~l~~~~e~~~~~~~l~~~~~~~~ 143 (328)
T PRK00080 87 LE--KPGD----LAAILTNL--EEGDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPAARS 143 (328)
T ss_pred cc--ChHH----HHHHHHhc--ccCCEEEEecHhhcch---------------HHHHHHHHHHHhcceeeeeccCccccc
Confidence 22 1122 22333322 4568999999999841 112234444444321 00 0
Q ss_pred cccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHH
Q 001491 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1068)
Q Consensus 703 ~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~ 782 (1068)
......++.+|++|+....++++|++ ||...+.+++|+.+++.+|++..+...++.++++.+..++..+.|+ ++.+.
T Consensus 144 ~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~ 220 (328)
T PRK00080 144 IRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIAN 220 (328)
T ss_pred eeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHH
Confidence 01123457899999999999999998 9988899999999999999999999889999999999999999984 57788
Q ss_pred HHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 783 ILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 783 ~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
.+++++...+..+ ....++.++...++..
T Consensus 221 ~~l~~~~~~a~~~-----------~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 221 RLLRRVRDFAQVK-----------GDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHH
Confidence 8887766655432 1123566666665533
No 98
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.59 E-value=5.3e-14 Score=159.33 Aligned_cols=218 Identities=18% Similarity=0.245 Sum_probs=146.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
+|.+++|.+..++.+...+...... ...+.+++|+||||||||++|+++|++++. .+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------~~~~~~~~~ 65 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPGLGKTTLAHIIANEMGV------NLKITSGPA 65 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEeccch
Confidence 4678899999888877766332211 123467999999999999999999999872 233333222
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccc---------cC
Q 001491 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---------RK 702 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~---------~~ 702 (1068)
.. ..+.+. ..+.. ...+.+|||||+|.+.+ ...+.|.+.++..... ..
T Consensus 66 ~~--~~~~l~----~~l~~--~~~~~vl~iDEi~~l~~---------------~~~e~l~~~~~~~~~~~v~~~~~~~~~ 122 (305)
T TIGR00635 66 LE--KPGDLA----AILTN--LEEGDVLFIDEIHRLSP---------------AVEELLYPAMEDFRLDIVIGKGPSARS 122 (305)
T ss_pred hc--CchhHH----HHHHh--cccCCEEEEehHhhhCH---------------HHHHHhhHHHhhhheeeeeccCccccc
Confidence 11 112222 22222 14567999999999842 1123344444433210 00
Q ss_pred cccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHH
Q 001491 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1068)
Q Consensus 703 ~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~ 782 (1068)
......++.+|++|+.+..+++++++ ||...+.+++|+.+++.++++..+...+..++++.+..+++.+.|+ ++.+.
T Consensus 123 ~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~ 199 (305)
T TIGR00635 123 VRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIAN 199 (305)
T ss_pred eeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHH
Confidence 01122358899999999999999999 9987889999999999999999988888889999999999999885 57777
Q ss_pred HHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 783 ILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 783 ~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
.+++.+...+... ....++.+++..++..
T Consensus 200 ~ll~~~~~~a~~~-----------~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 200 RLLRRVRDFAQVR-----------GQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHH
Confidence 7777665443221 1133666666666544
No 99
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2e-14 Score=168.92 Aligned_cols=203 Identities=22% Similarity=0.260 Sum_probs=155.7
Q ss_pred CCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhh-------
Q 001491 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------- 915 (1068)
Q Consensus 843 ~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~------- 915 (1068)
-.+-.|++++|+++.|++...... .-..+.-++|+||||+|||+|++.+|+.+|..|+.+..+.+.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 345678999999999998742111 112234578999999999999999999999999999865543
Q ss_pred --hhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCc-------------cccCc
Q 001491 916 --NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-------------EVLTG 980 (1068)
Q Consensus 916 --~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~-------------~~~~~ 980 (1068)
..|+|+....+-+-+.+|+..+| +++|||||++..+-.++. ..+||.-||-- .....
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP-------aSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP-------ASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh-------HHHHHhhcCHhhcCchhhccccCccchhh
Confidence 34999999999999999999998 999999999964432222 24555555421 23457
Q ss_pred EEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh--ccCCCCCchhhHHHHHHHHHhhhhhccccc
Q 001491 981 VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV--CDTSIPFSSLFCNELLICKLWHFFMCVSLN 1058 (1068)
Q Consensus 981 v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~--~~~~id~~~l~~~~~~~~~l~~~~~~~~~~ 1058 (1068)
|++|||+|..+.|+.+|+. |+ ++|.+.-|+.+|.++|.+.++=+. .+..++-..+...+.++..+.+.|+ |+=.
T Consensus 467 VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YT-REAG 542 (782)
T COG0466 467 VMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYT-REAG 542 (782)
T ss_pred eEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHh-Hhhh
Confidence 9999999999999999998 98 569999999999999999877333 5566777777778888888887654 4445
Q ss_pred cccccc
Q 001491 1059 LSSYII 1064 (1068)
Q Consensus 1059 ~~~~~~ 1064 (1068)
+|++.+
T Consensus 543 VR~LeR 548 (782)
T COG0466 543 VRNLER 548 (782)
T ss_pred hhHHHH
Confidence 555554
No 100
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=1.6e-14 Score=181.27 Aligned_cols=175 Identities=25% Similarity=0.302 Sum_probs=137.7
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEe
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v~ 910 (1068)
..++++.|.++....+.+.+.. +...+++|+||||||||++++++|+.+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 4678889988877766665532 234689999999999999999999987 78899999
Q ss_pred cchhh--hhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCC
Q 001491 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1068)
Q Consensus 911 ~~el~--~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn 988 (1068)
...++ .+|.|+.++.++++|+.+....++||||||+|.+.+.+..+.. ...+.+.|...|. .+.+.+|+||+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~--~~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG--SMDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc--cHHHHHHHHHHHh----CCCeEEEEecC
Confidence 98888 5799999999999999998778999999999999876532221 2234566666653 46788999998
Q ss_pred CCC-----CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhhc-cCCCCCch
Q 001491 989 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKVC-DTSIPFSS 1037 (1068)
Q Consensus 989 ~~d-----~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~~-~~~id~~~ 1037 (1068)
..+ .+|+|+.| ||. .|.++.|+.+++.+|++.+..++. ...+.+.+
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~ 371 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSD 371 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCH
Confidence 643 47999999 997 689999999999999999887752 23444443
No 101
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.3e-14 Score=164.00 Aligned_cols=193 Identities=21% Similarity=0.276 Sum_probs=144.6
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhh------
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------ 915 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~------ 915 (1068)
.-+|-.|++++|+++.|.+....- .+-..+.-++|+||||+|||++++.+|+.+|..|++++.+.+.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhc
Confidence 345678999999999999874211 1112344577999999999999999999999999999865543
Q ss_pred ---hhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-------------ccC
Q 001491 916 ---NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-------------VLT 979 (1068)
Q Consensus 916 ---~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-------------~~~ 979 (1068)
..|+|+....+-+-+++++-.+| +++|||+|++.. +..|.. ..+||..||--. ...
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~----g~qGDP---asALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS----GHQGDP---ASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC----CCCCCh---HHHHHHhcChhhccchhhhccccccchh
Confidence 34999999999999999999888 899999999952 122222 345555555221 235
Q ss_pred cEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh--ccCCCCCchhhHHHHHHHHHhhhh
Q 001491 980 GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV--CDTSIPFSSLFCNELLICKLWHFF 1052 (1068)
Q Consensus 980 ~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~--~~~~id~~~l~~~~~~~~~l~~~~ 1052 (1068)
.|++|||.|..|.|+++|+. |+ ++|.++-|..+|..+|.+..+-+. .+..+.-+..-..+++...|+..|
T Consensus 554 kVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred heEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 79999999999999999998 98 569999999999999999877544 334444444445555555555543
No 102
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.55 E-value=9.9e-14 Score=174.94 Aligned_cols=213 Identities=20% Similarity=0.303 Sum_probs=141.1
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccc-
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS- 633 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~- 633 (1068)
++.|++.+++.+.+.+...... +...+.++||+||||||||++|+++|+.++ ..++.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~---------~~~~~~~lll~GppG~GKT~lAk~iA~~l~------~~~~~i~~~~~~~ 385 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR---------GKMKGPILCLVGPPGVGKTSLGKSIAKALN------RKFVRFSLGGVRD 385 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh---------cCCCCceEEEECCCCCCHHHHHHHHHHHhc------CCeEEEeCCCccc
Confidence 4778888888888866432110 112234699999999999999999999997 556666554332
Q ss_pred --------ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh-----hccc
Q 001491 634 --------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE-----YGEK 700 (1068)
Q Consensus 634 --------~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~-----~~~~ 700 (1068)
..+.+.....+.+.|..+....| |+||||||.+.+.. . . .. ...|++.++. +...
T Consensus 386 ~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~---~---~-~~----~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 386 EAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF---R---G-DP----ASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred HHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc---C---C-CH----HHHHHHhcCHHhcCccccc
Confidence 12223333344555666654455 89999999996311 1 1 11 2233343332 1100
Q ss_pred -cCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHh-----hc-----cccCCHHHHHHH
Q 001491 701 -RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RR-----SLECSDEILLDV 769 (1068)
Q Consensus 701 -~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~-----~~-----~l~~~~~~l~~l 769 (1068)
.....+..++++|+|+|..+.++++|++ ||. .++|+.|+.+++.+|++.++. .+ ++.++++++..+
T Consensus 454 ~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred cCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHH
Confidence 0011122468999999999999999999 896 789999999999999987652 22 346888888887
Q ss_pred hh-ccCCCCchhHHHHHHHHHHHHHhhhc
Q 001491 770 AS-KCDGYDAYDLEILVDRTVHAAVGRYL 797 (1068)
Q Consensus 770 a~-~t~g~s~~DL~~Lv~~a~~~a~~r~~ 797 (1068)
++ ++..+..|+|+..+++.+..+..+..
T Consensus 531 ~~~~~~e~g~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 531 IKYYTREAGVRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred HHhcChhcCChHHHHHHHHHHHHHHHHHH
Confidence 76 44556678898888888777765544
No 103
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.54 E-value=3.8e-14 Score=157.26 Aligned_cols=150 Identities=23% Similarity=0.359 Sum_probs=114.7
Q ss_pred CCCCCCCCchhHHH---HHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhh
Q 001491 840 RSGWDDVGGLTDIQ---NAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k---~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~ 916 (1068)
+..+++++|++.+. ..|..+++. ..-.+++|||||||||||+|+++|+..+.+|..++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---- 82 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---- 82 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc----
Confidence 35677888877654 333344331 1224799999999999999999999999999999873
Q ss_pred hhccccHHHHHHHHHHHhcC----CCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC
Q 001491 917 KYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 992 (1068)
Q Consensus 917 ~~~g~se~~l~~lf~~a~~~----~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ 992 (1068)
-..-+.+|+++++|+.. +..|||+|||+++ .+..+..||..|+ ...-++|-|||..|..
T Consensus 83 ---~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE---~G~iilIGATTENPsF 145 (436)
T COG2256 83 ---TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE---NGTIILIGATTENPSF 145 (436)
T ss_pred ---cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc---CCeEEEEeccCCCCCe
Confidence 34568899999999543 3479999999998 5667888898884 4444556666777765
Q ss_pred -CChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHH
Q 001491 993 -LDAALLRPGRLDRLLFCDFPSPRERLDILKVISR 1026 (1068)
Q Consensus 993 -ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~ 1026 (1068)
+.+||++++ +++.+.+.+.++...+++..+.
T Consensus 146 ~ln~ALlSR~---~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 146 ELNPALLSRA---RVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred eecHHHhhhh---heeeeecCCHHHHHHHHHHHHh
Confidence 999999844 4689999999999999988443
No 104
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.53 E-value=5.3e-14 Score=174.28 Aligned_cols=182 Identities=22% Similarity=0.262 Sum_probs=138.4
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEe
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v~ 910 (1068)
..++.+.|-++..+.+.+.+.. +...++||+||||||||++|+.+|+.. +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3566777777766666665542 124578999999999999999999864 56777777
Q ss_pred cchhh--hhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCC
Q 001491 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1068)
Q Consensus 911 ~~el~--~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn 988 (1068)
...++ .+|.|+.+..++.+|..+....++||||||+|.+++.++.... ...+.+.|...+ ..+.+.+|+||+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g--~~d~~nlLkp~L----~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIKPLL----SSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc--HHHHHHHHHHHH----hCCCeEEEecCC
Confidence 77766 4688999999999999998888899999999999876532211 123334343333 457799999999
Q ss_pred CCC-----CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchhhHHHHH
Q 001491 989 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSLFCNELL 1044 (1068)
Q Consensus 989 ~~d-----~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l~~~~~~ 1044 (1068)
.++ ..|+||.| ||+ .|.++.|+.+++..|++.+..++ ..+.+++.+.....++
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~ 382 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAV 382 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHH
Confidence 875 47999999 996 69999999999999999998877 4567877665554433
No 105
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.1e-13 Score=158.86 Aligned_cols=195 Identities=18% Similarity=0.241 Sum_probs=138.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..+..+...+.. ...+..+||+||+|||||++|+.+|+.+......
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~--------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKS--------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 477888988888776665421 1223458999999999999999999998753210
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...++.+++.. ....+.++.....+..........|+||||+|++.. ...+.|+..
T Consensus 82 ~~i~~g~~~dviEIdaas--~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS--NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhh--cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHHH
Confidence 11233343321 122344444443333222334456999999999841 334555666
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+++|++|+.++.+++.+++ |+. .+.|.+++.++..+.++..+...++.++++++..|+...
T Consensus 145 LEEPp~---------~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S 212 (484)
T PRK14956 145 LEEPPA---------HIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG 212 (484)
T ss_pred hhcCCC---------ceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 48888899999999999999 765 688999999999999999998889999999999999999
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
+| +.||.-.+++.++.
T Consensus 213 ~G-d~RdAL~lLeq~i~ 228 (484)
T PRK14956 213 DG-SVRDMLSFMEQAIV 228 (484)
T ss_pred CC-hHHHHHHHHHHHHH
Confidence 88 57787777777653
No 106
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=4.1e-13 Score=161.33 Aligned_cols=195 Identities=17% Similarity=0.201 Sum_probs=140.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
+|++++|.+..++.+.+.+.. ...+..+||+||+|+|||++++.+|+.+.....
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~--------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDG--------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 477899998888877765421 122345799999999999999999999874321
Q ss_pred ------eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
....++.++..+ ....++++..++............|+||||+|+|.. .-.+.|++.
T Consensus 80 r~I~~G~h~DviEIDAas--~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLKt 142 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS--NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLKT 142 (830)
T ss_pred HHHhcCCCceEEEecccc--cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHHH
Confidence 011244444332 223344555444332222223456999999999841 334556677
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.||.+||.++.|.+.+++ |+. .|.|..++.++..++|+..+...++.++++.+..|++.+
T Consensus 143 LEEPP~---------~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 143 LEEPPP---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210 (830)
T ss_pred HHhcCC---------CeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 777543 37889999999999999999 765 789999999999999999998889999999999999999
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
+| +.++..++++.++.
T Consensus 211 ~G-smRdALsLLdQAia 226 (830)
T PRK07003 211 QG-SMRDALSLTDQAIA 226 (830)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 88 46777777766664
No 107
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.51 E-value=1.1e-13 Score=146.97 Aligned_cols=160 Identities=23% Similarity=0.357 Sum_probs=126.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
+..|++..|++++|+.+.-.++...... ...-|+||+||||.||||||..+|+++|.++-..+++-+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le---- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE---- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc----
Confidence 3678999999999999987776542221 2345999999999999999999999999999998887763
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc----------------ccCcEEE
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFV 983 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~----------------~~~~v~v 983 (1068)
-..++..++..... .+||||||||++.+ .+-.-|-..|+.+. ...++.+
T Consensus 90 --K~gDlaaiLt~Le~--~DVLFIDEIHrl~~-----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 90 --KPGDLAAILTNLEE--GDVLFIDEIHRLSP-----------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred --ChhhHHHHHhcCCc--CCeEEEehhhhcCh-----------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 33466666666433 46999999999943 33344445555332 1246889
Q ss_pred EEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 984 iatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+||-+..+|...|+. ||.....+.+++.++..+|++.-.+.+
T Consensus 155 IGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l 197 (332)
T COG2255 155 IGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKIL 197 (332)
T ss_pred eeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHh
Confidence 9999999999999988 999999999999999999999988766
No 108
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=2e-13 Score=170.51 Aligned_cols=202 Identities=21% Similarity=0.272 Sum_probs=147.6
Q ss_pred CCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhh--------
Q 001491 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------- 915 (1068)
Q Consensus 844 ~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~-------- 915 (1068)
.+..|++++|+.+.+++...... ....+..++|+||||||||++++.+|+.++.+++.++.+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 45889999999999887632211 112345699999999999999999999999999988755432
Q ss_pred -hhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCc-------------cccCcE
Q 001491 916 -NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-------------EVLTGV 981 (1068)
Q Consensus 916 -~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~-------------~~~~~v 981 (1068)
..|.|+....+.+.+..+....| |+||||+|++.+... ....+.|+..||.- ....++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-------g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-------GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-------CCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 24777777777777777765555 899999999965321 12356777777631 134689
Q ss_pred EEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh-h-ccCCCCCchhhHHHHHHHHHhhhhhcccccc
Q 001491 982 FVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK-V-CDTSIPFSSLFCNELLICKLWHFFMCVSLNL 1059 (1068)
Q Consensus 982 ~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~-~-~~~~id~~~l~~~~~~~~~l~~~~~~~~~~~ 1059 (1068)
++|||+|... |+++|+. ||+ +|.|..++.++..+|.+..+.. . ......-..+...+.+..++.+. +.++...
T Consensus 467 ~~i~TaN~~~-i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~-yt~e~Ga 541 (784)
T PRK10787 467 MFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRY-YTREAGV 541 (784)
T ss_pred EEEEcCCCCC-CCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHh-CCcccCC
Confidence 9999999884 9999998 995 7999999999999999988852 2 22222223455667777777774 4477777
Q ss_pred cccccc
Q 001491 1060 SSYIIF 1065 (1068)
Q Consensus 1060 ~~~~~~ 1065 (1068)
|.+.+.
T Consensus 542 R~LeR~ 547 (784)
T PRK10787 542 RSLERE 547 (784)
T ss_pred cHHHHH
Confidence 776654
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=2.1e-13 Score=172.79 Aligned_cols=174 Identities=24% Similarity=0.375 Sum_probs=135.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEe
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v~ 910 (1068)
..++++.|.++..+.+.+.+.. +...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 4678899988876666665542 234689999999999999999999987 78899998
Q ss_pred cchhh--hhhccccHHHHHHHHHHHh-cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeC
Q 001491 911 GPELL--NKYIGASEQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1068)
Q Consensus 911 ~~el~--~~~~g~se~~l~~lf~~a~-~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatT 987 (1068)
.+.++ .+|.|+.+..++.+|..+. ...++||||||+|.+.+.++.+ + ...+.+.|...| ..+.+.+|+||
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~--~-~~d~~~~lkp~l----~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--G-AMDAGNMLKPAL----ARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc--c-chhHHHHhcchh----hcCCCeEEEcC
Confidence 88877 5688999999999999864 4678999999999998765322 1 123455555544 45678999999
Q ss_pred CCCCC-----CChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCch
Q 001491 988 SRPDL-----LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSS 1037 (1068)
Q Consensus 988 n~~d~-----ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~ 1037 (1068)
+..+. +|+|+.| ||+. |.++.|+.+++..|++.+.+++ ..+.+.+.+
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~~-i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d 367 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQK-VFVAEPSVEDTIAILRGLKERYELHHHVQITD 367 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCCE-EEeCCCCHHHHHHHHHHHhhhhccCCCCCcCH
Confidence 98773 8999999 9985 7899999999999999888776 334455443
No 110
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.50 E-value=1.5e-13 Score=157.18 Aligned_cols=160 Identities=26% Similarity=0.375 Sum_probs=118.7
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
+..|+++.|.++.++.+...+..... .-.+..+++|+||||||||++|+++|+.++.++..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 35789999999999998877753211 012346899999999999999999999999988877765431
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc----------------ccCcEEE
Q 001491 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFV 983 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~----------------~~~~v~v 983 (1068)
....+..++... ..++||||||||.+.+ .....|...|+... ...++.+
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 223455555543 3467999999999832 22333444444221 1134778
Q ss_pred EEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 984 iatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|++|++++.+++++.+ ||...+.|++|+.+++.+|++..+...
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~ 196 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARIL 196 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999988 999999999999999999999887764
No 111
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.49 E-value=4.8e-13 Score=143.55 Aligned_cols=181 Identities=23% Similarity=0.303 Sum_probs=133.3
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
+.+.++.|.+.+.+-+.+.+..-. ..++|||||||||||+.|+++|+++......-..+...+.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~---------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRI---------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcC---------------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 456678888888777777653311 14699999999999999999999998543333445555666
Q ss_pred cccccchhhHHHHHHHHHHHHHh--------cCC-eEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcccc
Q 001491 631 RLSLEKGPIIRQALSNFISEALD--------HAP-SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~--------~~P-sILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1068)
+..|.... +..+...-..... ..| .|++|||+|.+.. .....|.+.|+.+..
T Consensus 98 derGisvv--r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 98 DERGISVV--REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTMEDFSR-- 158 (346)
T ss_pred ccccccch--hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHhcccc--
Confidence 66655422 2222221111111 112 5999999999952 445567778887654
Q ss_pred CcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCC
Q 001491 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1068)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g 775 (1068)
.+.||..||..+.++..+.+ |.. .+.|++...+.....|+..+.+.++.++++++..+++.++|
T Consensus 159 -------~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 159 -------TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred -------ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 37899999999999999999 776 78899999999999999999999999999999999999888
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=3.4e-13 Score=170.27 Aligned_cols=174 Identities=22% Similarity=0.305 Sum_probs=132.0
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEe
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v~ 910 (1068)
..++++.|.++..+.+.+.+.. +...+++|+||||||||++|+.+|+.+ +.+++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 5688899988876666655432 234589999999999999999999876 35678888
Q ss_pred cchhhh--hhccccHHHHHHHHHHHhc-CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeC
Q 001491 911 GPELLN--KYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1068)
Q Consensus 911 ~~el~~--~~~g~se~~l~~lf~~a~~-~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatT 987 (1068)
.+.+.. .|.|+.+..++.+|+.+.. ..++||||||+|.+.+.++.... ..+.+.|+..| ..+.+.+|+||
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~n~Lkp~l----~~G~l~~IgaT 323 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ---GDAANLLKPAL----ARGELRTIAAT 323 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---ccHHHHhhHHh----hCCCeEEEEec
Confidence 877763 6889999999999999864 56889999999999876542211 12345555554 45678888888
Q ss_pred CCCC-----CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhhc-cCCCCCch
Q 001491 988 SRPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKVC-DTSIPFSS 1037 (1068)
Q Consensus 988 n~~d-----~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~~-~~~id~~~ 1037 (1068)
+..+ .+|+||.| ||. .|.++.|+.+++..|++.+.+.+- .+.+.+.+
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d 376 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILD 376 (852)
T ss_pred CHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCH
Confidence 8643 38999999 995 799999999999999988877652 23455543
No 113
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=5.4e-13 Score=158.59 Aligned_cols=195 Identities=16% Similarity=0.198 Sum_probs=140.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCC-----c-------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-----D------- 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~-----~------- 619 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+.... .
T Consensus 14 tFddVIGQe~vv~~L~~al~~--------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQ--------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHh--------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 477899999888877765532 12235589999999999999999999997521 0
Q ss_pred -----------eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHH
Q 001491 620 -----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1068)
Q Consensus 620 -----------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1068)
....++.++... ....+++++.+..........+..|+||||+|+|.. ...+
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas--~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS--NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHH
Confidence 001334444332 234555666555443333334456999999999841 3345
Q ss_pred HHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHH
Q 001491 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1068)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~ 768 (1068)
.|+..+++... .+.||.+|+.++.+.+.++| |+. .+.|+.++.++..+.++..+...++.++++.+..
T Consensus 143 ALLKTLEEPP~---------~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~ 210 (700)
T PRK12323 143 AMLKTLEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRL 210 (700)
T ss_pred HHHHhhccCCC---------CceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56667776442 47888899999999999999 764 7899999999999999998888888899999999
Q ss_pred HhhccCCCCchhHHHHHHHHHH
Q 001491 769 VASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 769 la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
|+..+.| +.++..++++.++.
T Consensus 211 IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 211 LAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9998887 67777777766553
No 114
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.9e-13 Score=156.77 Aligned_cols=195 Identities=18% Similarity=0.239 Sum_probs=139.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
+|.+++|.+...+.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.....
T Consensus 13 tFddVIGQe~vv~~L~~aI~~--------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALER--------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 577899998887777665531 223466899999999999999999999874221
Q ss_pred ------eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
....++.++.+.- ...+.++..+...-......+..|+||||+|+|.. ...+.|+..
T Consensus 79 ~~I~~g~hpDviEIDAAs~--~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~NALLKt 141 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR--TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFNALLKT 141 (702)
T ss_pred HHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHHHHHHH
Confidence 1113344444321 23344444443332222224456999999999841 234556667
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.+|++|+.+..+++.+++ |+. .++|.+++.++..+.++..+.+.++.++++.+..++..+
T Consensus 142 LEEPP~---------~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 142 LEEPPE---------HVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HhcCCC---------CcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 766432 36778888888888888888 765 789999999999999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
.| +.+++.++++.++.
T Consensus 210 ~G-dLRdALnLLDQaIa 225 (702)
T PRK14960 210 QG-SLRDALSLTDQAIA 225 (702)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 77 77788777776653
No 115
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.47 E-value=4.5e-13 Score=155.82 Aligned_cols=210 Identities=18% Similarity=0.169 Sum_probs=136.5
Q ss_pred CCCchhHHHHHHHHHHhccCCchhhhhh---CCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhh-hhhcc
Q 001491 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQ---APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIG 920 (1068)
Q Consensus 845 ~i~gl~~~k~~l~e~i~~~~~~~~~~~~---~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~-~~~~g 920 (1068)
.+.|++++++.+...+....+....... ......+++||+||||||||++|+++|+.++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3899999999997766432111110000 1112457899999999999999999999999999999998865 35888
Q ss_pred ccHHH-HHHHHHHH----hcCCCeEEEEecCCccCCCCCCCC---CCcchHHHHHHHHhccCcc-----------ccCcE
Q 001491 921 ASEQA-VRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVE-----------VLTGV 981 (1068)
Q Consensus 921 ~se~~-l~~lf~~a----~~~~p~VLfiDEid~l~~~r~~~~---~~~~~~~~~~lL~~Ld~~~-----------~~~~v 981 (1068)
..... +..++..+ ....++||||||+|++.+++++.+ ......+++.||+.|++-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 76544 34444432 234678999999999987643211 1223468899999998531 12245
Q ss_pred EEEEeCCCCC----------------------------------------------------CCChhhcCCCCcceEEEc
Q 001491 982 FVFAATSRPD----------------------------------------------------LLDAALLRPGRLDRLLFC 1009 (1068)
Q Consensus 982 ~viatTn~~d----------------------------------------------------~ld~al~r~gRfd~~i~~ 1009 (1068)
++|+|+|-.- .+.|+|+ ||+|.++.|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 6666666400 0234554 499999999
Q ss_pred CCCCHHHHHHHHH----HHHHhh----ccCCCCCchhhHHHHHHHHHhhhhhcccccc
Q 001491 1010 DFPSPRERLDILK----VISRKV----CDTSIPFSSLFCNELLICKLWHFFMCVSLNL 1059 (1068)
Q Consensus 1010 ~~p~~~~r~~Il~----~~l~~~----~~~~id~~~l~~~~~~~~~l~~~~~~~~~~~ 1059 (1068)
.+++.++..+|+. .+++++ ....+ .+...+.+..++.+..+.....-
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i---~L~~t~~al~~Ia~~~~~~~~GA 364 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGV---ELEFTDEALEAIAKKAIERKTGA 364 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc---EEEECHHHHHHHHHhCCCCCCCC
Confidence 9999999999998 344433 22333 23344555555555544444333
No 116
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.47 E-value=5.4e-13 Score=151.08 Aligned_cols=158 Identities=22% Similarity=0.346 Sum_probs=115.0
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccc
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGA 921 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~ 921 (1068)
.|+++.|++++++.+...+...... .....+++|+||||||||++|+++|+.++.++..+.++...
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~------ 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------ 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc------
Confidence 5889999999999988877532111 12345799999999999999999999999887666554321
Q ss_pred cHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc----------------ccCcEEEEE
Q 001491 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFVFA 985 (1068)
Q Consensus 922 se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~----------------~~~~v~via 985 (1068)
....+...+... ..+.+|||||++.+.+ .....|+..|+... ...++.+++
T Consensus 68 ~~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 68 KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred CchhHHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 112333333332 3456999999999842 33444555554222 123478889
Q ss_pred eCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 986 ATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 986 tTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+|+++..+++++.+ ||...+.+++|+.+++.+|++..+...
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~ 175 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLL 175 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999988 998889999999999999999888753
No 117
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.6e-12 Score=153.88 Aligned_cols=192 Identities=19% Similarity=0.272 Sum_probs=126.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
++.+++|.+...+.+...+. . ...+.++||+|||||||||+|+++|+.+......
T Consensus 12 ~~~divGq~~i~~~L~~~i~---~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALK---K-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CHHHccCcHHHHHHHHHHHH---c-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 46778888777555544321 1 1234569999999999999999999998642110
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHH-HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~-a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1068)
...+..+++.. ....+.+++.. +.... .......++||||+|.+.. .....|+.
T Consensus 78 ~~i~~g~~~dv~el~aa~--~~gid~iR~i~-~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~LLk 139 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS--NRGIDEIRKIR-DAVGYRPMEGKYKVYIIDEVHMLTK---------------EAFNALLK 139 (472)
T ss_pred HHHhcCCCCccEEEeCcc--cCCHHHHHHHH-HHHhhChhcCCeEEEEEEChHHhHH---------------HHHHHHHH
Confidence 11344444432 12233333322 11111 1113446999999999841 22344556
Q ss_pred HHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhc
Q 001491 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1068)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1068)
.++.... .+++|++|+.+..+++++.+ |+. .+.|.+++.++...+++..+...++.++++++..++..
T Consensus 140 ~LE~p~~---------~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 140 TLEEPPS---------HVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHhCCC---------cEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6655332 36677777777889999999 775 78999999999999999999888899999999999998
Q ss_pred cCCCCchhHHHHHHHH
Q 001491 773 CDGYDAYDLEILVDRT 788 (1068)
Q Consensus 773 t~g~s~~DL~~Lv~~a 788 (1068)
+.| +.+++-+.++.+
T Consensus 208 s~G-dlR~aln~Le~l 222 (472)
T PRK14962 208 ASG-GLRDALTMLEQV 222 (472)
T ss_pred hCC-CHHHHHHHHHHH
Confidence 766 445555555543
No 118
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.5e-13 Score=155.87 Aligned_cols=212 Identities=22% Similarity=0.309 Sum_probs=144.1
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccc-
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS- 633 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~- 633 (1068)
+-.|++++++.|++++..-.... -..+.-++|+||||+|||+|++.+|+.++ ..|+.++...+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~---------~~kGpILcLVGPPGVGKTSLgkSIA~al~------RkfvR~sLGGvrD 388 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK---------KLKGPILCLVGPPGVGKTSLGKSIAKALG------RKFVRISLGGVRD 388 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc---------cCCCcEEEEECCCCCCchhHHHHHHHHhC------CCEEEEecCcccc
Confidence 56789999999999985522111 11123489999999999999999999998 677777765543
Q ss_pred --------ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH-----HHHhhccc
Q 001491 634 --------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD-----IMDEYGEK 700 (1068)
Q Consensus 634 --------~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~-----~ld~~~~~ 700 (1068)
-.+.|.+-.++-+-+..+....| +++|||||.+.. +-.+. + ...+++.|.. +.|.|-.-
T Consensus 389 EAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~s---s~rGD-P---aSALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 389 EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGS---SFRGD-P---ASALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred HHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccC---CCCCC-h---HHHHHhhcCHhhcCchhhccccC
Confidence 24567777777777777777777 889999999963 11111 1 1245554432 22333321
Q ss_pred cCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHh-----hcc-----ccCCHHHHHHHh
Q 001491 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RRS-----LECSDEILLDVA 770 (1068)
Q Consensus 701 ~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~-----~~~-----l~~~~~~l~~la 770 (1068)
..+..+|+||+|+|+.+.+|.+|+. |+. .|++..++.+|..+|.+.++- .++ +.++++++..+.
T Consensus 461 ---~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 461 ---PYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred ---ccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 2233479999999999999999999 887 899999999999999987643 233 447888888776
Q ss_pred hccCCCCc-hhHHHHHHHHHHHHHhh
Q 001491 771 SKCDGYDA-YDLEILVDRTVHAAVGR 795 (1068)
Q Consensus 771 ~~t~g~s~-~DL~~Lv~~a~~~a~~r 795 (1068)
+....-+| |.|+.-+...++.+...
T Consensus 535 ~~YTREAGVR~LeR~i~ki~RK~~~~ 560 (782)
T COG0466 535 RYYTREAGVRNLEREIAKICRKAAKK 560 (782)
T ss_pred HHHhHhhhhhHHHHHHHHHHHHHHHH
Confidence 65432222 44444444444444333
No 119
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=4.2e-13 Score=156.32 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=116.9
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
+..|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 368999999999999988877632 223358999999999999999999998653
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++++... ...-..+|++.+.+. .++..|+||||+|.+ .....+.||+.
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHHHHHHHH
Confidence 33333211 111245566655543 345679999999999 56789999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
|+ +....+++|++|+.++.|.+.+++ |+. .+.|.+++.++..+.++.++++
T Consensus 145 LE--EPp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 145 LE--EPPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred hh--cCCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHH
Confidence 97 455678888888889999999998 664 5889999998888888887765
No 120
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2e-12 Score=152.41 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=140.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
+|.+++|.+...+.+.+.+.. ...+.++||+||+|+||||+|+.+|+.+....+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~--------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTL--------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 577889998877766554321 233567999999999999999999998753221
Q ss_pred ------eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
....+++++.++ ....+.++..+...-.........|+||||+|.+.. .-.+.|+..
T Consensus 77 ~~i~~~~~~Dv~eidaas--~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS--NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEeccc--CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHHHHHH
Confidence 123455666543 223455555444332222223456999999999841 234556666
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.+|.+|+..+.+.+.+++ |+. .++|.+++.++..+.+...+.+.++.++++.+..++..+
T Consensus 140 LEePp~---------~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 140 LEEPAP---------HVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS 207 (491)
T ss_pred HhCCCC---------CeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776443 36777778888889999999 665 689999999999999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
+| +.+++..+++.++.
T Consensus 208 ~G-slR~alslLdqli~ 223 (491)
T PRK14964 208 SG-SMRNALFLLEQAAI 223 (491)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 77888888877664
No 121
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.6e-12 Score=157.37 Aligned_cols=194 Identities=21% Similarity=0.246 Sum_probs=137.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCcee----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~---------- 621 (1068)
+|.+++|.+..+..+.+.+.. ...+..+||+||+|||||++||++|+.+.......
T Consensus 14 tFddIIGQe~Iv~~LknaI~~--------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQ--------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHh--------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 477889998888776654421 12234479999999999999999999987532100
Q ss_pred --------eeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 622 --------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 622 --------~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
..++.++... ......++..+..+..........|+||||+|+|. ....+.|+..
T Consensus 80 ~~i~~g~~~DviEidAas--~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT---------------~eAqNALLKt 142 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS--RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS---------------RSSFNALLKT 142 (944)
T ss_pred HHHhcCCCceEEEecccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC---------------HHHHHHHHHH
Confidence 1112222221 12234455544433322223345699999999994 2455667777
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.||++|+.+..+.+.+++ |.. .+.|++++.++..+.|++.+...++.++++.+..|+..+
T Consensus 143 LEEPP~---------~vrFILaTTe~~kLl~TIlS--RCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S 210 (944)
T PRK14949 143 LEEPPE---------HVKFLLATTDPQKLPVTVLS--RCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA 210 (944)
T ss_pred HhccCC---------CeEEEEECCCchhchHHHHH--hhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 877543 37777788888889999998 654 789999999999999999888878889999999999998
Q ss_pred CCCCchhHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTV 789 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~ 789 (1068)
.| ++|++..+++.++
T Consensus 211 ~G-d~R~ALnLLdQal 225 (944)
T PRK14949 211 NG-SMRDALSLTDQAI 225 (944)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 6777777777665
No 122
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.44 E-value=9.3e-13 Score=152.25 Aligned_cols=178 Identities=19% Similarity=0.237 Sum_probs=123.7
Q ss_pred CCCchhHHHHHHHHHHhccCCchhhhhhCC----c-cccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhh-hhh
Q 001491 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAP----L-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKY 918 (1068)
Q Consensus 845 ~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~----~-~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~-~~~ 918 (1068)
.+.|++++++.+...+....+........+ . ...+++||+||||||||++|+++|+.++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 479999999999877642211111000001 0 1247899999999999999999999999999998887765 358
Q ss_pred ccccH-HHHHHHHHHH----hcCCCeEEEEecCCccCCCCCCCC---CCcchHHHHHHHHhccCcc-----------ccC
Q 001491 919 IGASE-QAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVE-----------VLT 979 (1068)
Q Consensus 919 ~g~se-~~l~~lf~~a----~~~~p~VLfiDEid~l~~~r~~~~---~~~~~~~~~~lL~~Ld~~~-----------~~~ 979 (1068)
+|... ..+..++..+ ....++||||||+|++.+++...+ ...+..+++.||+.|++.. ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 88763 3444444432 234567999999999987643211 1223468999999997642 134
Q ss_pred cEEEEEeCCCC---------------------------C-----------------------CCChhhcCCCCcceEEEc
Q 001491 980 GVFVFAATSRP---------------------------D-----------------------LLDAALLRPGRLDRLLFC 1009 (1068)
Q Consensus 980 ~v~viatTn~~---------------------------d-----------------------~ld~al~r~gRfd~~i~~ 1009 (1068)
+.++|+|+|-. + .+.|+|+. |+|.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 57888888851 0 02355554 99999999
Q ss_pred CCCCHHHHHHHHHHH
Q 001491 1010 DFPSPRERLDILKVI 1024 (1068)
Q Consensus 1010 ~~p~~~~r~~Il~~~ 1024 (1068)
.+.+.+++.+|+...
T Consensus 316 ~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 316 EKLDEEALIAILTKP 330 (413)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999874
No 123
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.2e-12 Score=154.36 Aligned_cols=195 Identities=18% Similarity=0.222 Sum_probs=139.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~f~divGq~~v~~~L~~~~~~--------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQ--------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHh--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 577899999888887776522 1223458999999999999999999999743211
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...+++++... ....+.++..+..+-.........|+||||+|++.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas--~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~naLLk~ 142 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS--RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSFNALLKT 142 (509)
T ss_pred HHHhcCCCceEEEEcccc--cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHHHHHHHH
Confidence 12245555432 233444554443322222223346999999999842 234556677
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.+|.+|+.+..+++.+++ |.. .++|.+++.++....++..+...++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s 210 (509)
T PRK14958 143 LEEPPS---------HVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA 210 (509)
T ss_pred HhccCC---------CeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776543 36777777888888888998 664 788999999999999999999889999999999999998
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
.| +.+++.++++.++.
T Consensus 211 ~G-slR~al~lLdq~ia 226 (509)
T PRK14958 211 NG-SVRDALSLLDQSIA 226 (509)
T ss_pred CC-cHHHHHHHHHHHHh
Confidence 76 78888888877653
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.43 E-value=1.2e-12 Score=166.58 Aligned_cols=175 Identities=24% Similarity=0.377 Sum_probs=134.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEe
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v~ 910 (1068)
..++.+.|.++..+.+.+.+.. +...+++|+||||||||++++.+|..+ +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 4678899988876666665542 234689999999999999999999875 67888888
Q ss_pred cchhh--hhhccccHHHHHHHHHHHhc-CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeC
Q 001491 911 GPELL--NKYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1068)
Q Consensus 911 ~~el~--~~~~g~se~~l~~lf~~a~~-~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatT 987 (1068)
...++ .+|.|..+..++.+|..+.. ..++||||||+|.+.+.++.. + ...+.+.|...+ ..+.+.+|++|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~--~-~~d~~~~Lk~~l----~~g~i~~IgaT 309 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE--G-AMDAGNMLKPAL----ARGELHCIGAT 309 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc--c-hhHHHHHhchhh----hcCceEEEEeC
Confidence 88876 56889999999999999865 468999999999998654322 1 123444444333 45678888898
Q ss_pred CCCC-----CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchh
Q 001491 988 SRPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSL 1038 (1068)
Q Consensus 988 n~~d-----~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l 1038 (1068)
+..+ .+|+++.| ||.. |.++.|+.+++..|++.+..++ ..+.+.+.+-
T Consensus 310 t~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~ 363 (852)
T TIGR03346 310 TLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDP 363 (852)
T ss_pred cHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHH
Confidence 8764 37999999 9975 7899999999999999988777 3455555443
No 125
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=9.4e-13 Score=155.89 Aligned_cols=154 Identities=16% Similarity=0.227 Sum_probs=115.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..++++.|++.+.+.+...+... +.+.++||+||||||||++|+++|+.++.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 468999999999988888776532 23356899999999999999999998754
Q ss_pred ---------cEEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 905 ---------~~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
.++.++.+.- ..-..+|++...+.. +...|+||||+|.+ ....++.|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHHHHHHHH
Confidence 3445544221 112456666655542 24569999999998 45678899999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
|+. ..+.+++|++|+.++.+++++++ |+ ..+.|.+++.++...+++..++.
T Consensus 141 LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 141 LEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred HHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHH
Confidence 873 33456666677778889999998 76 47999999999999998888765
No 126
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.43 E-value=2.7e-12 Score=142.71 Aligned_cols=144 Identities=22% Similarity=0.330 Sum_probs=103.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHh----cCCeEEEEccchh
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDS 666 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsILfIDEiD~ 666 (1068)
.+++|||||||||||+|+.+|+..+ ..|..+++-.. ...+ ++.+++.+.. .+..||||||||.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~------~~f~~~sAv~~---gvkd----lr~i~e~a~~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTN------AAFEALSAVTS---GVKD----LREIIEEARKNRLLGRRTILFLDEIHR 115 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhC------CceEEeccccc---cHHH----HHHHHHHHHHHHhcCCceEEEEehhhh
Confidence 5699999999999999999999987 66777765332 2233 4455555533 3457999999999
Q ss_pred hhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCC-C-CCCChhhhcCCcccccccCCCCCHH
Q 001491 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-L-EKIPQSLTSSGRFDFHVQLPAPAAS 744 (1068)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~-~-~~L~~aL~~~gRF~~~i~l~~P~~~ 744 (1068)
+-. .-...|+..++. +.|++||+|+. | -.++++|+| |.. ++.+.+.+.+
T Consensus 116 fnK---------------~QQD~lLp~vE~-----------G~iilIGATTENPsF~ln~ALlS--R~~-vf~lk~L~~~ 166 (436)
T COG2256 116 FNK---------------AQQDALLPHVEN-----------GTIILIGATTENPSFELNPALLS--RAR-VFELKPLSSE 166 (436)
T ss_pred cCh---------------hhhhhhhhhhcC-----------CeEEEEeccCCCCCeeecHHHhh--hhh-eeeeecCCHH
Confidence 841 113446665554 23777776643 3 468999999 543 7899999999
Q ss_pred HHHHHHHHHHh--hcccc-----CCHHHHHHHhhccCCC
Q 001491 745 ERKAILEHEIQ--RRSLE-----CSDEILLDVASKCDGY 776 (1068)
Q Consensus 745 er~~IL~~~l~--~~~l~-----~~~~~l~~la~~t~g~ 776 (1068)
+..+++++.+. .+++. ++++.+..++..+.|-
T Consensus 167 di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 167 DIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred HHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 99999998433 34444 7788999999998883
No 127
>PRK06893 DNA replication initiation factor; Validated
Probab=99.43 E-value=2.3e-12 Score=139.68 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=111.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
..++||||||||||+|++++|+++.... ..+.+++...... ...+.+... .+..+|+|||++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIGN 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcCC
Confidence 3489999999999999999999875332 2334555432111 011222222 34579999999998521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCC---hhhhcCCcccccccCCCCCHHHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRFDFHVQLPAPAASERK 747 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~---~aL~~~gRF~~~i~l~~P~~~er~ 747 (1068)
......+.+ .++.....+. .++++++...+..++ +.+.++.+++..+.+++|+.++|.
T Consensus 107 ---------~~~~~~l~~----l~n~~~~~~~------~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 107 ---------EEWELAIFD----LFNRIKEQGK------TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred ---------hHHHHHHHH----HHHHHHHcCC------cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 111123333 3333322111 245566666676654 788986666678899999999999
Q ss_pred HHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 748 ~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+|++..+..+++.++++++..++.+.+| +.+.+..++++..
T Consensus 168 ~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 168 IVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 9999999888999999999999999886 5667777776654
No 128
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.43 E-value=1.9e-12 Score=156.21 Aligned_cols=229 Identities=16% Similarity=0.208 Sum_probs=146.0
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCC----ceeeeEEE
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVF 626 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~ 626 (1068)
..|.+++|.+..++.+...+ . .+.+.++||+||||||||++|+++++...... .....++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al---~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL---C------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH---h------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 34678899988887776432 1 22357899999999999999999988654221 11357888
Q ss_pred EecccccccchhhHHHHHH----------HHH----------HHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHH
Q 001491 627 VCCSRLSLEKGPIIRQALS----------NFI----------SEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (1068)
Q Consensus 627 i~~s~l~~~~~~~~~~~l~----------~~f----------~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l 686 (1068)
++|........+.....+. ..| ........++|||||++.+. ...+..+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~-----------~~~q~~L 195 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH-----------PVQMNKL 195 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC-----------HHHHHHH
Confidence 8886421110000000000 000 01112234799999999984 2223344
Q ss_pred HHHHHHHHHh-----hccccCc----------ccCCCcEE-EEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHH
Q 001491 687 TKFLVDIMDE-----YGEKRKS----------SCGIGPIA-FVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAIL 750 (1068)
Q Consensus 687 ~~~L~~~ld~-----~~~~~~~----------~~~~~~V~-vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL 750 (1068)
...|.+.... +...+.. .....++. +++|++.++.+++++++ |+. .+.+++++.+++.+|+
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il 272 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIA 272 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHH
Confidence 4333221100 0000000 00011344 44566779999999999 775 7889999999999999
Q ss_pred HHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhc
Q 001491 751 EHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1068)
Q Consensus 751 ~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~ 821 (1068)
+..+++.++.++++.++.++.++. +++++.++++.|+..+..+ ....++.+|+..++.
T Consensus 273 ~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-----------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 273 KNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-----------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-----------CCcEEcHHHHHHHhC
Confidence 999998888999999998887764 7899999999988666433 124588889888875
No 129
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4.1e-12 Score=153.93 Aligned_cols=195 Identities=19% Similarity=0.264 Sum_probs=139.2
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce----------
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------- 620 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~---------- 620 (1068)
.+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~--------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL--------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 3577889998888877665422 1123447999999999999999999998753210
Q ss_pred --------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001491 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1068)
Q Consensus 621 --------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1068)
...++.++... ....+.++..+..+..........|+||||+|++.. ...+.|+.
T Consensus 79 C~~i~~g~~~D~ieidaas--~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLK 141 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS--RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLK 141 (647)
T ss_pred HHHHHcCCCCCceeecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHH
Confidence 01233344322 123455555544433322334456999999999841 34566777
Q ss_pred HHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhc
Q 001491 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1068)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1068)
.+++... .+.||.+|+.+..+.+.+++ |+ ..++|.+++.++....|+..+...++.+++..+..++..
T Consensus 142 tLEEPp~---------~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 142 TLEEPPE---------HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA 209 (647)
T ss_pred HHHcCCC---------CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7777543 37788888889999999999 75 488999999999999999988888888999999999999
Q ss_pred cCCCCchhHHHHHHHHH
Q 001491 773 CDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 773 t~g~s~~DL~~Lv~~a~ 789 (1068)
+.| +.++...+++.++
T Consensus 210 s~G-s~R~Al~lldqai 225 (647)
T PRK07994 210 ADG-SMRDALSLTDQAI 225 (647)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 887 5677777776654
No 130
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4e-12 Score=153.12 Aligned_cols=195 Identities=18% Similarity=0.219 Sum_probs=137.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 tFddIIGQe~vv~~L~~ai~~--------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDE--------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 477899999888877776532 1234669999999999999999999998643211
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...++.++... ....+.++..+.............|+||||+|.+.. ...+.|+..
T Consensus 80 r~i~~g~~~DvlEidaAs--~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLKt 142 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS--NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLKT 142 (709)
T ss_pred HHHhccCccceEEEeccc--cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHHH
Confidence 01223333222 122334444333221111223456999999998731 234556666
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.+|++|+.+..+.+.+++ |+. .|.|++++.++....++..+.+.++.++++.+..|++.+
T Consensus 143 LEEPp~---------~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 143 LEEPPE---------HVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred HHhCCC---------CcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 766432 36778888888899989888 764 789999999999999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
.| +.+++.++++.++.
T Consensus 211 ~G-slRdAlnLLDqaia 226 (709)
T PRK08691 211 AG-SMRDALSLLDQAIA 226 (709)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 78888888887764
No 131
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=6.1e-12 Score=146.19 Aligned_cols=226 Identities=19% Similarity=0.234 Sum_probs=142.7
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCC---ceeeeEEEEeccc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSR 631 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~---~~~~~~~~i~~s~ 631 (1068)
.+.|.+..++++...+...+. ...+++++|+||||||||++++++++.+.... .....+++++|..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~-----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR-----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 678899999999888866443 22345699999999999999999999875221 1125678889876
Q ss_pred ccccc--hh------------------hHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHH
Q 001491 632 LSLEK--GP------------------IIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1068)
Q Consensus 632 l~~~~--~~------------------~~~~~l~~~f~~a~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (1068)
..... .. ...+.+..++..... ..+.||+|||+|.+.+ .. . .+...|
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---~~-----~----~~L~~l 152 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---DD-----D----DLLYQL 152 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---CC-----c----HHHHhH
Confidence 43211 00 112223334443332 4467899999999962 10 0 223333
Q ss_pred HHHHHhhccccCcccCCCcEEEEEecCCCC---CCChhhhcCCccc-ccccCCCCCHHHHHHHHHHHHhh--ccccCCHH
Q 001491 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDE 764 (1068)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~L~~aL~~~gRF~-~~i~l~~P~~~er~~IL~~~l~~--~~l~~~~~ 764 (1068)
.+..+.... ...++.+|+++|.++ .+++.+.+ ||. ..++|++++.+++.+|++..+.. ....++++
T Consensus 153 ~~~~~~~~~------~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~ 224 (365)
T TIGR02928 153 SRARSNGDL------DNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG 224 (365)
T ss_pred hccccccCC------CCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh
Confidence 332111000 012588888888875 46777777 664 56899999999999999988763 22346777
Q ss_pred HHHHHhhc---cCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 765 ILLDVASK---CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 765 ~l~~la~~---t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
++..++.. +.| .++.+..++++|...|..+ ....++.+++.+|+...
T Consensus 225 ~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~-----------~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 225 VIPLCAALAAQEHG-DARKAIDLLRVAGEIAERE-----------GAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 66655444 344 3455556777777655433 12458888888777654
No 132
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4.5e-12 Score=150.62 Aligned_cols=196 Identities=22% Similarity=0.247 Sum_probs=136.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..+..+...+.. ...+.++||+||+|||||++|+++|+.+......
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~--------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILN--------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 467888998887766554311 2234679999999999999999999998743210
Q ss_pred -----------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHH
Q 001491 621 -----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1068)
Q Consensus 621 -----------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1068)
...++.++... ....+.++..+.............|+||||+|.+.. ...+.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas--~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~na 147 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS--KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFNA 147 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC--CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHHH
Confidence 01233333321 123344444443322222223456999999999841 22444
Q ss_pred HHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHH
Q 001491 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1068)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~l 769 (1068)
|+..++.... .+.+|++|+..+.+++.+.+ |+. .++|.+++.++...+++..+...+..++++.+..+
T Consensus 148 LLk~LEepp~---------~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~I 215 (507)
T PRK06645 148 LLKTLEEPPP---------HIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRII 215 (507)
T ss_pred HHHHHhhcCC---------CEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555665332 36777778888889999998 664 68899999999999999999998999999999999
Q ss_pred hhccCCCCchhHHHHHHHHHHH
Q 001491 770 ASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 770 a~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
+..++| +.+++.++++.++..
T Consensus 216 a~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 216 AYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 999887 778888888887643
No 133
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.41 E-value=9.4e-12 Score=149.73 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=124.3
Q ss_pred cccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccC----CceeeeEEEEec
Q 001491 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH----KDLVAHIVFVCC 629 (1068)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~----~~~~~~~~~i~~ 629 (1068)
..|.|.+..++.|...|...+.. ..++..++|+|+||||||++++.+++++... ......+++++|
T Consensus 755 D~LPhREeEIeeLasfL~paIkg----------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ----------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc----------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 46788999999998888665531 1222335699999999999999999887521 111256789999
Q ss_pred ccccccc-----------------hhhHHHHHHHHHHHHHh--cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHH
Q 001491 630 SRLSLEK-----------------GPIIRQALSNFISEALD--HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1068)
Q Consensus 630 s~l~~~~-----------------~~~~~~~l~~~f~~a~~--~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (1068)
..+.... .......+..+|..... ....||+|||||.|... . +.+ |
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~-QDV---L 889 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------T-QKV---L 889 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------H-HHH---H
Confidence 6644221 11122345555655422 33569999999999631 0 122 2
Q ss_pred HHHHHhhccccCcccCCCcEEEEEecCC---CCCCChhhhcCCcccc-cccCCCCCHHHHHHHHHHHHhhccccCCHHHH
Q 001491 691 VDIMDEYGEKRKSSCGIGPIAFVASAQS---LEKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQRRSLECSDEIL 766 (1068)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~V~vIattn~---~~~L~~aL~~~gRF~~-~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l 766 (1068)
..+++...... ..+.+||.+|. ++.+++.+++ ||.. .+.|++++.+++.+||+..+......++++++
T Consensus 890 YnLFR~~~~s~------SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAI 961 (1164)
T PTZ00112 890 FTLFDWPTKIN------SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAI 961 (1164)
T ss_pred HHHHHHhhccC------CeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 33333222111 24889999987 4456778888 5543 48899999999999999988764445889999
Q ss_pred HHHhhccC
Q 001491 767 LDVASKCD 774 (1068)
Q Consensus 767 ~~la~~t~ 774 (1068)
..+|+...
T Consensus 962 ELIArkVA 969 (1164)
T PTZ00112 962 QLCARKVA 969 (1164)
T ss_pred HHHHHhhh
Confidence 88888544
No 134
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=1.8e-12 Score=147.57 Aligned_cols=201 Identities=22% Similarity=0.325 Sum_probs=143.2
Q ss_pred CCCchhHHHHHHHHHHhccCCchhhhhhCCcc---ccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhh-hhcc
Q 001491 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG 920 (1068)
Q Consensus 845 ~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~---~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~-~~~g 920 (1068)
.+.|++++++.+...+....+...+ ..+.+ .+.++||+||||||||++|+++|+.++.+|+.+++.++.. .|+|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l--~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQL--PEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC--CcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 4899999999998776532111111 01111 2479999999999999999999999999999999998885 6888
Q ss_pred c-cHHHHHHHHHHHh-----------------------------------------------------------------
Q 001491 921 A-SEQAVRDIFSKAT----------------------------------------------------------------- 934 (1068)
Q Consensus 921 ~-se~~l~~lf~~a~----------------------------------------------------------------- 934 (1068)
. .+..++++|..|.
T Consensus 94 ~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~i 173 (443)
T PRK05201 94 RDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEI 173 (443)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEE
Confidence 4 4667777776661
Q ss_pred -------------------------------------------------------------------------cCCCeEE
Q 001491 935 -------------------------------------------------------------------------AAAPCLL 941 (1068)
Q Consensus 935 -------------------------------------------------------------------------~~~p~VL 941 (1068)
+....|+
T Consensus 174 ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIV 253 (443)
T PRK05201 174 EIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIV 253 (443)
T ss_pred EEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0123599
Q ss_pred EEecCCccCCCCCCC-CCCcchHHHHHHHHhccCc--------cccCcEEEEEeCC----CCCCCChhhcCCCCcceEEE
Q 001491 942 FFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGV--------EVLTGVFVFAATS----RPDLLDAALLRPGRLDRLLF 1008 (1068)
Q Consensus 942 fiDEid~l~~~r~~~-~~~~~~~~~~~lL~~Ld~~--------~~~~~v~viatTn----~~d~ld~al~r~gRfd~~i~ 1008 (1068)
||||||+++.+.+.+ .+.....++..||..|+|- -..+++++||+.. .|+.|-|.|. |||.-.+.
T Consensus 254 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 254 FIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999999775432 2333456899999999873 2346788888753 5666667887 49999999
Q ss_pred cCCCCHHHHHHHH----HHHHHhh----ccC--CCCCchhhHHHHHHHHHh
Q 001491 1009 CDFPSPRERLDIL----KVISRKV----CDT--SIPFSSLFCNELLICKLW 1049 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il----~~~l~~~----~~~--~id~~~l~~~~~~~~~l~ 1049 (1068)
+.+++.++..+|| ..++++. ... .+.|.+-.....+..++.
T Consensus 332 L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 332 LDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 9999999999999 4466655 223 344555555555555543
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=3.3e-12 Score=152.25 Aligned_cols=196 Identities=17% Similarity=0.284 Sum_probs=132.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
.+++||||+|+|||+|++++++++.... ....++++++..+.......+.......|.... ..+++|+|||++.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC
Confidence 5699999999999999999999986432 125678888887754433333321112232222 35789999999998521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCC---CChhhhcCCccc--ccccCCCCCHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---L~~aL~~~gRF~--~~i~l~~P~~~e 745 (1068)
. .....+...|....+. + ..++|++...+.. +++.+.+ ||. ..+.+++|+.++
T Consensus 227 ~---------~~~~~l~~~~n~l~~~----~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEA----G-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLET 284 (450)
T ss_pred H---------HHHHHHHHHHHHHHHC----C-------CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHH
Confidence 1 1122333433333222 1 1355555555544 6688888 775 478999999999
Q ss_pred HHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 746 r~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
|.+|++..+...++.++++++..+|....| +.++|..++.+....+... ...++.+.+.+++...
T Consensus 285 r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~------------~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 285 RIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT------------GKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHh
Confidence 999999999988899999999999999877 6788888887776544322 1336777777776653
No 136
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.41 E-value=2.1e-12 Score=163.99 Aligned_cols=165 Identities=24% Similarity=0.323 Sum_probs=132.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEe
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v~ 910 (1068)
..++++.|-++..+.+.+.+.. +.+.+++|+||||||||++|+.+|... +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4688899988888888877652 244689999999999999999999886 47899999
Q ss_pred cchhh--hhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCC
Q 001491 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1068)
Q Consensus 911 ~~el~--~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn 988 (1068)
...++ .+|.|+.++.++.+|+.+....++||||||+|.+.+.++.... ..+.+.|...| ..+.+.+|++|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~---~~~a~lLkp~l----~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA---IDAANILKPAL----ARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc---ccHHHHhHHHH----hCCCcEEEEeCC
Confidence 98887 4789999999999999998888999999999999876542211 13344444444 456688888888
Q ss_pred CCC-----CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 989 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 989 ~~d-----~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
..+ ..|+++.+ ||.. |.+..|+.++...|++.+...+
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~ 357 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRY 357 (821)
T ss_pred HHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHH
Confidence 664 47999999 9965 7999999999999999887665
No 137
>PLN03025 replication factor C subunit; Provisional
Probab=99.41 E-value=4.8e-12 Score=144.15 Aligned_cols=189 Identities=20% Similarity=0.216 Sum_probs=126.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
++.+++|.+..++.+.+.+ .. ....|+||+||||||||++|+++|+++.... ....+..++.++
T Consensus 11 ~l~~~~g~~~~~~~L~~~~----~~-----------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd 74 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIA----RD-----------GNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASD 74 (319)
T ss_pred CHHHhcCcHHHHHHHHHHH----hc-----------CCCceEEEECCCCCCHHHHHHHHHHHHhccc-Cccceeeecccc
Confidence 4567777877666554432 11 1124699999999999999999999984321 113355566554
Q ss_pred ccccchhhHHHHHHHHHHHHH---hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCC
Q 001491 632 LSLEKGPIIRQALSNFISEAL---DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~---~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1068)
..+ .+.++..+........ .....+++|||+|.+.. ...+.|...++.+...
T Consensus 75 ~~~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------~aq~aL~~~lE~~~~~-------- 129 (319)
T PLN03025 75 DRG--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------------GAQQALRRTMEIYSNT-------- 129 (319)
T ss_pred ccc--HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------HHHHHHHHHHhcccCC--------
Confidence 332 2334444333211110 12356999999999842 2234456666654432
Q ss_pred cEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHH
Q 001491 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1068)
Q Consensus 709 ~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~ 786 (1068)
..+|.+||....+.+++++ |.. .++|++|+.+++...++..+.+.++.++++.+..++..+.| +.+.+-+.++
T Consensus 130 -t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 130 -TRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred -ceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4577788888888899998 654 78999999999999999999999999999999999988765 3344434443
No 138
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=1.3e-12 Score=157.21 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=119.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
...|++++|++.+++.|...+... +....+||+||+|||||++|+++|+.+++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 468999999999999999887632 22345799999999999999999998854
Q ss_pred ---------cEEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 905 ---------~~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
++++++..+ ...-..++++++.+.. .+..|+||||+|.+ +....|.||+.
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~NALLKt 142 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAFNAMLKT 142 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHHHHHHHH
Confidence 233333221 1123456777776532 34679999999999 56789999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+ +....+.||++||.++.|.+.+++ |+ ..|.|..++.++..+.++.++++.
T Consensus 143 LE--EPP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 143 LE--EPPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred HH--hcCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHc
Confidence 97 455678888899999999999998 66 568999999999999998887653
No 139
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=3.5e-12 Score=150.76 Aligned_cols=276 Identities=13% Similarity=0.186 Sum_probs=165.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
.+++||||+|+|||+|++++++++.... ....+.+++++++.......+...-..-|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 4599999999999999999999875322 125678888877654433332211112233333446889999999988531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCC---CChhhhcCCcc--cccccCCCCCHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRF--DFHVQLPAPAASE 745 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---L~~aL~~~gRF--~~~i~l~~P~~~e 745 (1068)
......+...+....+. . ..+++++...+.. +.+.+.+ || +..+.+++|+.+.
T Consensus 210 ---------~~~q~elf~~~n~l~~~----~-------k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 210 ---------TGVQTELFHTFNELHDS----G-------KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEET 267 (440)
T ss_pred ---------HHHHHHHHHHHHHHHHc----C-------CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHH
Confidence 11112344433333221 1 2455555556655 4567777 66 4567999999999
Q ss_pred HHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhccccc
Q 001491 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1068)
Q Consensus 746 r~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P 825 (1068)
|.+|++..+...++.++++++..||....| +.++|+.++.+....+... ...++.+...+++.++..
T Consensus 268 r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~------------~~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 268 RKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT------------GEEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHHHhc
Confidence 999999999888899999999999999877 6788888887765444322 133666666666655321
Q ss_pred ceeecccccccCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc
Q 001491 826 VAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1068)
Q Consensus 826 ~slr~v~~~~~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~ 905 (1068)
.. .-......+.+.+.+.+..... ... |.|++-..+-..||.+|-.+-..
T Consensus 335 ~~--------------~~~~~i~~~~I~~~V~~~~~i~--~~~--------------l~s~~R~~~i~~aR~iamyl~r~ 384 (440)
T PRK14088 335 PN--------------RVKAMDPIDELIEIVAKVTGVS--REE--------------ILSNSRNVKALLARRIGMYVAKN 384 (440)
T ss_pred cc--------------cccCCCCHHHHHHHHHHHcCCc--HHH--------------HhCCCCCccccHHHHHHHHHHHH
Confidence 00 0001233556666666554321 111 24455556666777777555333
Q ss_pred EEEEecchhhhhhccccHHHHHHHHHHH
Q 001491 906 FISVKGPELLNKYIGASEQAVRDIFSKA 933 (1068)
Q Consensus 906 ~i~v~~~el~~~~~g~se~~l~~lf~~a 933 (1068)
....+.+++ ++..|.+-..+-...++.
T Consensus 385 ~~~~s~~~I-g~~fgr~hstV~~a~~~i 411 (440)
T PRK14088 385 YLGSSLRTI-AEKFNRSHPVVVDSVKKV 411 (440)
T ss_pred HhCCCHHHH-HHHhCCCHHHHHHHHHHH
Confidence 333344443 233354444444444443
No 140
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=6.3e-12 Score=145.49 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=130.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
++.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~--------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSL--------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 467888998888777664421 1223558999999999999999999998632110
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1068)
...+..++... ...... ++++.+.+. .....|+||||+|.+.. ...+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~--~~~v~~----ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~na 138 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS--RTKVEE----MREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNA 138 (363)
T ss_pred HHHhcCCCCceEEecccc--cCCHHH----HHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHH
Confidence 01222232211 112233 333333322 12345999999999831 22344
Q ss_pred HHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHH
Q 001491 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1068)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~l 769 (1068)
|+..++.... .+.+|.+|+.++.+.+.+.+ |+. .+++++|+.++..++++..+...+..++++.+..+
T Consensus 139 LLk~lEe~~~---------~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~i 206 (363)
T PRK14961 139 LLKTLEEPPQ---------HIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLI 206 (363)
T ss_pred HHHHHhcCCC---------CeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5566665432 36677777888889999988 764 78999999999999999999888888999999999
Q ss_pred hhccCCCCchhHHHHHHHHH
Q 001491 770 ASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 770 a~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+..+.| +++++.++++.++
T Consensus 207 a~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 207 AYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 998877 6777777777664
No 141
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=7.9e-13 Score=157.23 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=119.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
...|++++|++.+++.|...+... +....+||+||+|||||++|+++|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 468999999999999999887632 22345799999999999999999998865
Q ss_pred --------------cEEEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHH
Q 001491 905 --------------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 966 (1068)
Q Consensus 905 --------------~~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~ 966 (1068)
++++++..+ ...-..+|++.+.+. .++..|+||||+|.+ +....|
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-----------s~~AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----------TNHAFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------CHHHHH
Confidence 223333221 112355677766653 345679999999999 567899
Q ss_pred HHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 967 QFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 967 ~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
.||+.|+ +...++++|++|+.++.|.+.+++ |+ ..+.|..++.++..+.++.++.+
T Consensus 143 ALLKTLE--EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~ 198 (700)
T PRK12323 143 AMLKTLE--EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGE 198 (700)
T ss_pred HHHHhhc--cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHH
Confidence 9999998 456678888889999999999998 66 45899999999998888888765
No 142
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.39 E-value=3.8e-12 Score=144.96 Aligned_cols=203 Identities=21% Similarity=0.284 Sum_probs=141.2
Q ss_pred CCCchhHHHHHHHHHHhccCCchhhhhh-CCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhh-hhcc-c
Q 001491 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQ-APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG-A 921 (1068)
Q Consensus 845 ~i~gl~~~k~~l~e~i~~~~~~~~~~~~-~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~-~~~g-~ 921 (1068)
-+.|++++++.+..++....+....... ..-..+.++||+||||||||++|+++|..++.+|+.++..++.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 4789999999998776632111111000 00123479999999999999999999999999999999988774 6777 4
Q ss_pred cHHHHHHHHHHH--------------------------------------------------------------------
Q 001491 922 SEQAVRDIFSKA-------------------------------------------------------------------- 933 (1068)
Q Consensus 922 se~~l~~lf~~a-------------------------------------------------------------------- 933 (1068)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 566667776665
Q ss_pred -----------------------------------------------------------------------hcCCCeEEE
Q 001491 934 -----------------------------------------------------------------------TAAAPCLLF 942 (1068)
Q Consensus 934 -----------------------------------------------------------------------~~~~p~VLf 942 (1068)
+.....|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 011345999
Q ss_pred EecCCccCCCCCCCC-CCcchHHHHHHHHhccCcc--------ccCcEEEEEeCC----CCCCCChhhcCCCCcceEEEc
Q 001491 943 FDEFDSIAPKRGHDN-TGVTDRVVNQFLTELDGVE--------VLTGVFVFAATS----RPDLLDAALLRPGRLDRLLFC 1009 (1068)
Q Consensus 943 iDEid~l~~~r~~~~-~~~~~~~~~~lL~~Ld~~~--------~~~~v~viatTn----~~d~ld~al~r~gRfd~~i~~ 1009 (1068)
|||||+++.+.+... +.....++..||..|+|-. ..+++++||+.. .|+.|=|.|. |||.-.+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 999999997653222 3334568999999998732 346788888754 4555666776 599999999
Q ss_pred CCCCHHHHHHHH----HHHHHhh----ccC--CCCCchhhHHHHHHHHHh
Q 001491 1010 DFPSPRERLDIL----KVISRKV----CDT--SIPFSSLFCNELLICKLW 1049 (1068)
Q Consensus 1010 ~~p~~~~r~~Il----~~~l~~~----~~~--~id~~~l~~~~~~~~~l~ 1049 (1068)
.+++.++..+|| ..+.++. ... .+.|.+-.....+..++.
T Consensus 331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 999999999999 4455554 222 344555555555554443
No 143
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.6e-11 Score=144.25 Aligned_cols=226 Identities=20% Similarity=0.232 Sum_probs=144.6
Q ss_pred cccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccc
Q 001491 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1068)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~ 633 (1068)
..+.|.+..++++...+...+. ...+.+++|+||||||||++++.+++.+.... ....+++++|....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~-----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~ 97 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR-----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDR 97 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCC
Confidence 3577889999998887755442 12345699999999999999999999885332 12567888886543
Q ss_pred ccc------------------hhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 001491 634 LEK------------------GPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1068)
Q Consensus 634 ~~~------------------~~~~~~~l~~~f~~a~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1068)
... .......+..+...... ..+.||+|||+|.+.. .. + ......|.+.+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~-~~---~-------~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE-KE---G-------NDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc-cC---C-------chHHHHHHHhh
Confidence 210 00122333333333322 3457999999999961 10 0 12334444444
Q ss_pred HhhccccCcccCCCcEEEEEecCCCC---CCChhhhcCCccc-ccccCCCCCHHHHHHHHHHHHhhc--cccCCHHHHHH
Q 001491 695 DEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRR--SLECSDEILLD 768 (1068)
Q Consensus 695 d~~~~~~~~~~~~~~V~vIattn~~~---~L~~aL~~~gRF~-~~i~l~~P~~~er~~IL~~~l~~~--~l~~~~~~l~~ 768 (1068)
+.... .++.+|+++|..+ .+++.+.+ ||. ..+.|++++.++..+|++..+... ...+++++++.
T Consensus 167 ~~~~~--------~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 236 (394)
T PRK00411 167 EEYPG--------ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDL 236 (394)
T ss_pred hccCC--------CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHH
Confidence 43321 1477888888753 46677776 553 468999999999999999887642 23478888888
Q ss_pred HhhccCCCC--chhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 769 VASKCDGYD--AYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 769 la~~t~g~s--~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
+++.+.+.+ .+.+-.++.+|...|..+ ....++.+++.+|+...
T Consensus 237 i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~-----------~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 237 IADLTAREHGDARVAIDLLRRAGLIAERE-----------GSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 888874422 334445666666555433 22468889998887664
No 144
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=1e-11 Score=148.37 Aligned_cols=198 Identities=15% Similarity=0.182 Sum_probs=130.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
..++|||++|+|||+|++++++++.... ....+.|+++..+.......+.....+.|.... ...++|+||||+.+.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC
Confidence 3499999999999999999999875311 125678888887765444433332222333322 35689999999998521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCC---CCChhhhcCCcccccccCCCCCHHHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDFHVQLPAPAASERK 747 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~L~~aL~~~gRF~~~i~l~~P~~~er~ 747 (1068)
. .....+.+.|... ...+ .-+||++...+. .+++.|.++......+.+..|+.+.|.
T Consensus 393 e---------~tqeeLF~l~N~l----~e~g-------k~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 393 E---------STQEEFFHTFNTL----HNAN-------KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred H---------HHHHHHHHHHHHH----HhcC-------CCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 1 1122344433333 2211 123343333333 467889993333567799999999999
Q ss_pred HHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 748 ~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
+||+..+..+++.++++++..|+....+ +.++|+.++.+....+... ...++.+.....++++
T Consensus 453 aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~------------~~~itl~la~~vL~~~ 515 (617)
T PRK14086 453 AILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN------------RQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999776 5778888887765444322 1335666666555544
No 145
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.8e-12 Score=154.57 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=118.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..|+++.|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 368999999999999998887621 23456899999999999999999999865
Q ss_pred ---------cEEEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 905 ---------~~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++.+++++- ..-..+|++...+. .++..|+||||+|.+ .....+.|++.
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~NALLKt 141 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFNALLKT 141 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHH
Confidence 3444444321 12345677766553 245679999999998 56788999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ....+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++..+.++.++++.
T Consensus 142 LEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 142 LEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred Hhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHc
Confidence 973 44566777777888888888876 66 458999999999999888888764
No 146
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.38 E-value=1.6e-11 Score=130.44 Aligned_cols=195 Identities=22% Similarity=0.293 Sum_probs=138.3
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
..+.+|.|.+.+++.++++...++. ..|..++||+|++|||||++++++..++.... ..++.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~-----------G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~ 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ-----------GLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKE 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc-----------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHH
Confidence 4567899999999999999887775 55678899999999999999999999987544 445666555
Q ss_pred cccccchhhHHHHHHHHHHHHH-hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 631 RLSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~-~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
++.. +.+++.... ...+-|||+||+. + . ++. .-...|..++++-.... ..+
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLs--F---e--~~d-------~~yk~LKs~LeGgle~~-----P~N 141 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLS--F---E--EGD-------TEYKALKSVLEGGLEAR-----PDN 141 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCC--C---C--CCc-------HHHHHHHHHhcCccccC-----CCc
Confidence 4432 233344433 2345699999973 1 1 111 22455666776644322 237
Q ss_pred EEEEEecCCCCCCChhhhc---------------------CCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHH-
Q 001491 710 IAFVASAQSLEKIPQSLTS---------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL- 767 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~---------------------~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~- 767 (1068)
|++.||+|+.+-++..+.. .-||+..+.|.+|+.++..+|++.++...++.++.+.+.
T Consensus 142 vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~ 221 (249)
T PF05673_consen 142 VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQ 221 (249)
T ss_pred EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999986544322111 139999999999999999999999999999998875433
Q ss_pred ---HHhhccCCCCchhHHHHHHH
Q 001491 768 ---DVASKCDGYDAYDLEILVDR 787 (1068)
Q Consensus 768 ---~la~~t~g~s~~DL~~Lv~~ 787 (1068)
..|....|.||+-..++++.
T Consensus 222 ~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 222 EALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 45556677888877766653
No 147
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.3e-11 Score=147.38 Aligned_cols=194 Identities=19% Similarity=0.249 Sum_probs=132.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
.+.+++|.+..++.+.+.+.. ...+..+||+||||||||++|+++|+.+.....
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~--------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQ--------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 467888998887777665432 122344699999999999999999999863211
Q ss_pred -----eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 001491 620 -----LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1068)
Q Consensus 620 -----~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1068)
....+..+++.. ......++.....+........+.++||||+|.+. ....+.|+..+
T Consensus 78 ~i~~~~h~dv~el~~~~--~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS--NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEecccc--cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHHHHHHHHH
Confidence 112344555432 22233333322222111122456699999998773 13344555666
Q ss_pred HhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccC
Q 001491 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (1068)
Q Consensus 695 d~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~ 774 (1068)
+.... .+++|.+++.+..+.+.+.+ |+. .++|++|+.++....++..+...++.++++.+..++..+.
T Consensus 141 Eep~~---------~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 141 EEPPE---------HVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred HhCCC---------CEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 55432 36777778888899999998 665 7899999999999999999998899999999999999988
Q ss_pred CCCchhHHHHHHHHH
Q 001491 775 GYDAYDLEILVDRTV 789 (1068)
Q Consensus 775 g~s~~DL~~Lv~~a~ 789 (1068)
| +.+++.++++++.
T Consensus 209 G-dlR~aln~Lekl~ 222 (504)
T PRK14963 209 G-AMRDAESLLERLL 222 (504)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 4566666666553
No 148
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.37 E-value=5.1e-12 Score=154.82 Aligned_cols=187 Identities=20% Similarity=0.235 Sum_probs=114.9
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhh--hcccc--------HHHHHHHHHHHhcCCCeEEEEecC
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGAS--------EQAVRDIFSKATAAAPCLLFFDEF 946 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~--~~g~s--------e~~l~~lf~~a~~~~p~VLfiDEi 946 (1068)
...++||.|.||+|||+|..++|+..|..+++++.++-..- ..|.. -.....-|..|...+ ..+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehh
Confidence 34689999999999999999999999999999997653211 11111 112334455554443 39999999
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHhccCc-cccCcEEEEEeCCCCC------CCChhhcCCCCcceEEEcCCCCHHHHHH
Q 001491 947 DSIAPKRGHDNTGVTDRVVNQFLTELDGV-EVLTGVFVFAATSRPD------LLDAALLRPGRLDRLLFCDFPSPRERLD 1019 (1068)
Q Consensus 947 d~l~~~r~~~~~~~~~~~~~~lL~~Ld~~-~~~~~v~viatTn~~d------~ld~al~r~gRfd~~i~~~~p~~~~r~~ 1019 (1068)
.-...+.-.+.+.+.+..-..++.++|.. ....+..|+||-|.-+ .++..++. ||.. ++++.++.++...
T Consensus 1621 NLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFsv-V~~d~lt~dDi~~ 1697 (4600)
T COG5271 1621 NLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFSV-VKMDGLTTDDITH 1697 (4600)
T ss_pred hhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhhe-EEecccccchHHH
Confidence 86532211111111122222333444432 2345677877776543 38999998 9965 7899999999999
Q ss_pred HHHHHHHhh-ccCCCCCchhhH--HHHHH--HHHhhhhhcccccccccccccc
Q 001491 1020 ILKVISRKV-CDTSIPFSSLFC--NELLI--CKLWHFFMCVSLNLSSYIIFCF 1067 (1068)
Q Consensus 1020 Il~~~l~~~-~~~~id~~~l~~--~~~~~--~~l~~~~~~~~~~~~~~~~~~~ 1067 (1068)
|...+..++ -|.-..+..+++ .+-.. .....+.-+|++|+++-+||.-
T Consensus 1698 Ia~~~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~ 1750 (4600)
T COG5271 1698 IANKMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLI 1750 (4600)
T ss_pred HHHhhCCccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHHHH
Confidence 998888765 111111112211 11111 2234455589999999999853
No 149
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.2e-12 Score=146.55 Aligned_cols=189 Identities=22% Similarity=0.357 Sum_probs=130.4
Q ss_pred cccccchhHHHHHHHHHHH-hcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccc
Q 001491 554 SSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1068)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~-ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l 632 (1068)
.+-+|++..++.|++.+.+ -+. +-..+.-+.|+||||+|||++++.+|+.|+ ..|+.++...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr----------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALn------RkFfRfSvGG~ 474 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR----------GSVQGKILCFVGPPGVGKTSIAKSIARALN------RKFFRFSVGGM 474 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc----------ccCCCcEEEEeCCCCCCcccHHHHHHHHhC------CceEEEecccc
Confidence 3567899999999998844 222 122345589999999999999999999998 55666654433
Q ss_pred c---------ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH-----HHHhhc
Q 001491 633 S---------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD-----IMDEYG 698 (1068)
Q Consensus 633 ~---------~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~-----~ld~~~ 698 (1068)
. -.+.|.+-.++-+.+....-..| +++|||+|++.+ ...++ ....+++.|.. ++|.|-
T Consensus 475 tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~---g~qGD----PasALLElLDPEQNanFlDHYL 546 (906)
T KOG2004|consen 475 TDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS---GHQGD----PASALLELLDPEQNANFLDHYL 546 (906)
T ss_pred ccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC---CCCCC----hHHHHHHhcChhhccchhhhcc
Confidence 2 24566666666666666666666 889999999952 11111 11244444422 333333
Q ss_pred cccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhh-----cc-----ccCCHHHHHH
Q 001491 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR-----RS-----LECSDEILLD 768 (1068)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~-----~~-----l~~~~~~l~~ 768 (1068)
+ -..+...|.||+|+|..+.+|++|+. |+. .|+++-+..++...|.+.++-. ++ +.++++++..
T Consensus 547 d---Vp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~ 620 (906)
T KOG2004|consen 547 D---VPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLA 620 (906)
T ss_pred c---cccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHH
Confidence 2 12334479999999999999999999 887 8999999999999999877542 22 3466766555
Q ss_pred Hhhc
Q 001491 769 VASK 772 (1068)
Q Consensus 769 la~~ 772 (1068)
+.++
T Consensus 621 lI~~ 624 (906)
T KOG2004|consen 621 LIER 624 (906)
T ss_pred HHHH
Confidence 5443
No 150
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.1e-11 Score=150.10 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=133.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.....
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~--------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQ--------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 577888988877766664422 122345799999999999999999999874210
Q ss_pred -----------eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHH
Q 001491 620 -----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1068)
Q Consensus 620 -----------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1068)
....++.++... ....+.++..+.............|+||||+|++.. .-.+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas--~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS--NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc--ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHHH
Confidence 001233333221 123344444443321111112345999999999842 2244
Q ss_pred HHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHH
Q 001491 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1068)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~ 768 (1068)
.|+..+++... .+.+|.+|+.+..+.+.+++ |.. .++|..++.++..+.++..+.+.++.++++.+..
T Consensus 143 aLLKtLEEPP~---------~~~fIL~Ttd~~kil~TIlS--Rc~-~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~ 210 (618)
T PRK14951 143 AMLKTLEEPPE---------YLKFVLATTDPQKVPVTVLS--RCL-QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRL 210 (618)
T ss_pred HHHHhcccCCC---------CeEEEEEECCchhhhHHHHH--hce-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56666665432 36777777888888888888 654 7899999999999999999998899999999999
Q ss_pred HhhccCCCCchhHHHHHHHHHH
Q 001491 769 VASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 769 la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
++..+.| +.+++.++++.++.
T Consensus 211 La~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 211 LARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9998887 67777777776654
No 151
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.36 E-value=7e-12 Score=147.60 Aligned_cols=194 Identities=19% Similarity=0.306 Sum_probs=128.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHH-HHHHHHHHHHhcCCeEEEEccchhhhc
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~-~l~~~f~~a~~~~PsILfIDEiD~L~~ 669 (1068)
.+++||||+|+|||+|++++++++.... ....++++++.++.......... .+.. |.... ..+++|+|||+|.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRNNKMEE-FKEKY-RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHcCCHHH-HHHHH-HhCCEEEEehhhhhcC
Confidence 5699999999999999999999985331 12567788887765332222211 1112 22212 2467999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCC---CChhhhcCCccc--ccccCCCCCHH
Q 001491 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 744 (1068)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---L~~aL~~~gRF~--~~i~l~~P~~~ 744 (1068)
.. .....+...+....+. + ..++|++...+.. +++.+.+ ||. ..+.+++|+.+
T Consensus 214 ~~---------~~~~~l~~~~n~~~~~----~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHEN----G-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLE 271 (405)
T ss_pred CH---------HHHHHHHHHHHHHHHC----C-------CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHH
Confidence 11 1112333333332221 1 1345555555544 5678888 775 47899999999
Q ss_pred HHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 745 er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
+|.+|++..+...++.++++++..+|....+ +.++|+.++.+....+... ...++.+...+++..
T Consensus 272 ~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~------------~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 272 TRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT------------GKPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHH
Confidence 9999999999999999999999999988876 6788888888776554322 133666666666554
No 152
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2e-11 Score=146.01 Aligned_cols=195 Identities=16% Similarity=0.245 Sum_probs=135.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~--------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALET--------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 467888999888877665421 1223458999999999999999999988642110
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...++.++... ....+.++..+..+-.........|+||||+|.+.. ...+.|+..
T Consensus 80 ~~i~~~~~~dlieidaas--~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS--RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeeccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHHHH
Confidence 11233333321 122334444443332222223456999999999841 345567777
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.+|++|+.+..+.+.+++ |.. .++|.+++.++....++..+...++.+++..+..++..+
T Consensus 143 LEepp~---------~v~fIL~Ttd~~kil~tI~S--Rc~-~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 143 LEEPPE---------YVKFILATTDYHKIPVTILS--RCI-QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred HhcCCC---------CceEEEEECChhhhhhhHHH--hee-eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776543 36677777778888888888 664 789999999999999999888888999999999999988
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
.| +.+++.++++.++.
T Consensus 211 ~G-dlR~alnlLek~i~ 226 (546)
T PRK14957 211 KG-SLRDALSLLDQAIS 226 (546)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 66 67777777776653
No 153
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.36 E-value=2e-11 Score=132.86 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=113.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
.+++||||+|||||+|++++++++.... ..+.+++....... ..+.++... ...+|+|||++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~---~~v~y~~~~~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~- 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRG---RAVGYVPLDKRAWF--------VPEVLEGME--QLSLVCIDNIECIAG- 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEHHHHhhh--------hHHHHHHhh--hCCEEEEeChhhhcC-
Confidence 5799999999999999999999876332 34455555442211 111111111 235899999999842
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCC---CChhhhcCCccc--ccccCCCCCHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---L~~aL~~~gRF~--~~i~l~~P~~~e 745 (1068)
.......+.+.+...++. +. ..+++++++++.. +.+.|++ |+. ..+.+.+|+.++
T Consensus 112 --------~~~~~~~lf~l~n~~~e~----g~------~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 112 --------DELWEMAIFDLYNRILES----GR------TRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEE 171 (235)
T ss_pred --------CHHHHHHHHHHHHHHHHc----CC------CeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHH
Confidence 112223455555544432 10 1244455555555 5789999 663 688999999999
Q ss_pred HHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 746 r~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
+.++++..+..+++.++++++..++.+.+| +.+.+..++++..+.+
T Consensus 172 ~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 172 KLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 999999988888999999999999999887 6777777777754333
No 154
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.5e-11 Score=149.06 Aligned_cols=195 Identities=18% Similarity=0.245 Sum_probs=135.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
+|.+++|.+...+.+.+.+.. ...+..+||+||+|||||++|+.+|+.+.....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQ--------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 477889998888877776532 122355899999999999999999999864321
Q ss_pred ------eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
....++.++... ......++..+..+..........|+||||+|++.. ...+.|+..
T Consensus 80 ~~i~~g~~~dv~eidaas--~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS--NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc--cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHH
Confidence 112344444422 123333443333222111223446999999999841 234455566
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+++|.+|+.++.+++.+++ |+. .+.|++|+.++....++..+.+.++.++++.+..++..+
T Consensus 143 LEepp~---------~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 143 LEEPPA---------HVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred hcCCCC---------CeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 36677777788999999998 665 678999999999999999999889999999999999988
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
.| +.+++..+++.++.
T Consensus 211 ~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 211 EG-GMRDALSILDQAIS 226 (559)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 77 67777777776543
No 155
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=2.4e-11 Score=145.33 Aligned_cols=193 Identities=20% Similarity=0.247 Sum_probs=133.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
.|.+++|.+..++.+.+.+.. ...+.++||+||+|+|||++|+++|+.+......
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~--------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILN--------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 467888998888777664421 2224669999999999999999999998643211
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...++.++... ....+.++..+..+-.........|++|||+|.+.. ...+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas--~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS--NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEecccc--ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHHH
Confidence 01233343322 123344444433322222223345999999999841 224556677
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+++|++|+.++.+.+.+++ |+. .++|++++.++....++..+.+.+..++++.+..++..+
T Consensus 143 LEEPp~---------~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS 210 (605)
T PRK05896 143 LEEPPK---------HVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLA 210 (605)
T ss_pred HHhCCC---------cEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776442 36777777888999999998 765 789999999999999999998888889999999999998
Q ss_pred CCCCchhHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRT 788 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a 788 (1068)
.| +.+++..+++.+
T Consensus 211 ~G-dlR~AlnlLekL 224 (605)
T PRK05896 211 DG-SLRDGLSILDQL 224 (605)
T ss_pred CC-cHHHHHHHHHHH
Confidence 77 566666666654
No 156
>PRK04195 replication factor C large subunit; Provisional
Probab=99.35 E-value=1.1e-11 Score=148.77 Aligned_cols=189 Identities=18% Similarity=0.287 Sum_probs=129.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
++.+++|.+..++.+.+.+..... ..+++++||+||||||||++|+++|++++ ..++.+++++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~-----------g~~~~~lLL~GppG~GKTtla~ala~el~------~~~ielnasd 74 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLK-----------GKPKKALLLYGPPGVGKTSLAHALANDYG------WEVIELNASD 74 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEEcccc
Confidence 467888999999888887754332 23367899999999999999999999987 6677888776
Q ss_pred ccccchhhHHHHHHHHHHHHH-h-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 632 LSLEKGPIIRQALSNFISEAL-D-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~-~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
.... ..+...+........ . ..+.+|+|||+|.+.+. . . ......|.+.++.. +
T Consensus 75 ~r~~--~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~----~---d----~~~~~aL~~~l~~~-----------~ 130 (482)
T PRK04195 75 QRTA--DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN----E---D----RGGARAILELIKKA-----------K 130 (482)
T ss_pred cccH--HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc----c---c----hhHHHHHHHHHHcC-----------C
Confidence 4421 222222222111100 1 24679999999998531 0 0 01223344444421 2
Q ss_pred EEEEEecCCCCCCCh-hhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQ-SLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 710 V~vIattn~~~~L~~-aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a 788 (1068)
..+|.++|.+..+.. .+++ |+ ..+.|++|+..++..+++..+...++.++++++..|+..+.| |++.++...
T Consensus 131 ~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred CCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 346667788777776 6665 44 478999999999999999999989999999999999998765 555555433
No 157
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.3e-11 Score=146.70 Aligned_cols=194 Identities=18% Similarity=0.193 Sum_probs=136.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|||||++|+++|+.+.....
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~--------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDA--------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 477888998888777665522 122344899999999999999999999874221
Q ss_pred --------eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHH
Q 001491 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1068)
Q Consensus 620 --------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (1068)
....++.++... ....+.+++...............|+||||+|.+.. ...+.|+
T Consensus 77 ~~i~~~~~~~~dvieidaas--~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAAS--HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEecccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHH
Confidence 112344444432 123455554443333222223446999999999841 2345566
Q ss_pred HHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhh
Q 001491 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1068)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~ 771 (1068)
..+++... .+++|++|+.++.+.+.+++ |.. +++|..++.++..+.+...+...++.++++.+..++.
T Consensus 140 K~LEEpp~---------~~~fIL~tte~~kll~TI~S--Rc~-~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 140 KIVEEPPE---------HLIFIFATTEPEKVLPTIRS--RTH-HYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHhcCCC---------CeEEEEEeCChHhhHHHHHH--hce-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77776543 37777777888899999999 643 7899999999999999999998899999999999988
Q ss_pred ccCCCCchhHHHHHHHHH
Q 001491 772 KCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 772 ~t~g~s~~DL~~Lv~~a~ 789 (1068)
...| +.+++.++++..+
T Consensus 208 ~s~G-dlR~aln~Ldql~ 224 (584)
T PRK14952 208 AGGG-SPRDTLSVLDQLL 224 (584)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7765 6677777777654
No 158
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=5.6e-12 Score=154.49 Aligned_cols=154 Identities=19% Similarity=0.248 Sum_probs=115.1
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcE-------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF------------- 906 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~------------- 906 (1068)
+..|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 368999999999999988876531 2234469999999999999999999986531
Q ss_pred -----------EEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 907 -----------ISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 907 -----------i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
++++..+ ...-..+|++...+. .++..|+||||+|++ .....+.||+.
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKt 142 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKT 142 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHH
Confidence 1111110 011234566665543 345579999999999 67899999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
|+ +....+.+|++|+.+..|.+.++. |+ ..+.|.+++.++....++.+++.
T Consensus 143 LE--EPP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 143 LE--EPPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred Hh--ccCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 97 455667777778888888888887 55 56899999999999888888766
No 159
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.35 E-value=2.5e-11 Score=131.22 Aligned_cols=167 Identities=21% Similarity=0.314 Sum_probs=112.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~ 669 (1068)
+++++|+||+|||||++|+++++.+.... ..+++++|..+.... .+++... ....+|+|||+|.+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQAD--------PEVLEGL--EQADLVCLDDVEAIAG 104 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHHhH--------HHHHhhc--ccCCEEEEeChhhhcC
Confidence 47799999999999999999999875322 467788988775322 1222222 2346999999999841
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCC---hhhhcCCcc--cccccCCCCCHH
Q 001491 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRF--DFHVQLPAPAAS 744 (1068)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~---~aL~~~gRF--~~~i~l~~P~~~ 744 (1068)
.......+.. .++...... ..++++++..+..++ +.+.+ |+ ...+.+++|+.+
T Consensus 105 ---------~~~~~~~L~~----~l~~~~~~~-------~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~ 162 (226)
T TIGR03420 105 ---------QPEWQEALFH----LYNRVREAG-------GRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDE 162 (226)
T ss_pred ---------ChHHHHHHHH----HHHHHHHcC-------CeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHH
Confidence 0011123333 333322111 133443333443332 66777 55 467899999999
Q ss_pred HHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 745 er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
++..+++.++.+.++.++++.+..++.. .+.+.+++..+++++...+
T Consensus 163 e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 163 EKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRAS 209 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 9999999888878888999999999996 4558899999988866433
No 160
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2e-11 Score=152.52 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=138.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|||||++|+.+|+.|.....
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~--------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDS--------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 467888988887777665532 122344899999999999999999999974221
Q ss_pred --------eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHH
Q 001491 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1068)
Q Consensus 620 --------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (1068)
....++.++... ....+.++......+.........|+||||+|+|.. .-.+.|+
T Consensus 79 ~~~~~g~~~~~dv~eidaas--~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLL 141 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAAS--HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALL 141 (824)
T ss_pred HHHHcCCCCCCcEEEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHHH
Confidence 012233443322 123455555444433333334556999999999941 3455677
Q ss_pred HHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhh
Q 001491 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1068)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~ 771 (1068)
+.+++... .++||++|+..+.|.+.|++ |.. ++.|..++.++..++|+..+...++.++++.+..++.
T Consensus 142 K~LEEpP~---------~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 142 KIVEEPPE---------HLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred HHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777543 37777778888888889998 654 7899999999999999999988899999999999988
Q ss_pred ccCCCCchhHHHHHHHHH
Q 001491 772 KCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 772 ~t~g~s~~DL~~Lv~~a~ 789 (1068)
...| +.+++..++++.+
T Consensus 210 ~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 210 AGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8877 6677777777655
No 161
>PLN03025 replication factor C subunit; Provisional
Probab=99.35 E-value=6.2e-12 Score=143.23 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=111.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc-C----CcEEEEecchh
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S----LRFISVKGPEL 914 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-g----~~~i~v~~~el 914 (1068)
+..++++.|.+++.+.|...+... ...|+||+||||||||++|+++|+.+ + ..+++++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 467899999999988887765421 12379999999999999999999987 2 24666666553
Q ss_pred hhhhccccHHHHHHHHHHH-h------cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeC
Q 001491 915 LNKYIGASEQAVRDIFSKA-T------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1068)
Q Consensus 915 ~~~~~g~se~~l~~lf~~a-~------~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatT 987 (1068)
.+ -..+++..... . ...+.|++|||+|.+ +....+.|+..|+.. ...+.++.+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~--~~~t~~il~~ 136 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY--SNTTRFALAC 136 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc--cCCceEEEEe
Confidence 22 12333333221 1 134679999999998 455678888888632 3344566678
Q ss_pred CCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 988 SRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 988 n~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|....+.+++++ |. ..+.|++|+.++....++.++++-
T Consensus 137 n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 137 NTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred CCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHc
Confidence 888888889987 65 468999999999999998888764
No 162
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.34 E-value=2.8e-11 Score=138.93 Aligned_cols=187 Identities=19% Similarity=0.269 Sum_probs=121.4
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccc
Q 001491 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1068)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l 632 (1068)
+.+++|.+..++.+...+ .. +...++||+||||||||++|+++++++.... ....+.+++|+++
T Consensus 14 ~~~~~g~~~~~~~L~~~~----~~-----------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~ 77 (337)
T PRK12402 14 LEDILGQDEVVERLSRAV----DS-----------PNLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADF 77 (337)
T ss_pred HHHhcCCHHHHHHHHHHH----hC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhh
Confidence 567778777666665533 21 1123699999999999999999999986432 1234667777665
Q ss_pred cccchh--------------------hHHHHHHHHHHHHHh-----cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHH
Q 001491 633 SLEKGP--------------------IIRQALSNFISEALD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 687 (1068)
Q Consensus 633 ~~~~~~--------------------~~~~~l~~~f~~a~~-----~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~ 687 (1068)
...... .....++.+...... ..+.+|+|||+|.+.. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~---------------~~~ 142 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE---------------DAQ 142 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------HHH
Confidence 321100 011223333322222 2345999999998731 223
Q ss_pred HHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHH
Q 001491 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL 767 (1068)
Q Consensus 688 ~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~ 767 (1068)
+.|...++.... ...+|.+++.+..+.+.+.+ |+. .+.+++|+.+++..+++..+...++.++++++.
T Consensus 143 ~~L~~~le~~~~---------~~~~Il~~~~~~~~~~~L~s--r~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 143 QALRRIMEQYSR---------TCRFIIATRQPSKLIPPIRS--RCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHhccC---------CCeEEEEeCChhhCchhhcC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 345555555432 13455566666677778887 653 689999999999999999999889999999999
Q ss_pred HHhhccCCCCchhHHH
Q 001491 768 DVASKCDGYDAYDLEI 783 (1068)
Q Consensus 768 ~la~~t~g~s~~DL~~ 783 (1068)
.++..+.| +.+++..
T Consensus 211 ~l~~~~~g-dlr~l~~ 225 (337)
T PRK12402 211 LIAYYAGG-DLRKAIL 225 (337)
T ss_pred HHHHHcCC-CHHHHHH
Confidence 99998744 3444333
No 163
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.34 E-value=2.2e-11 Score=140.95 Aligned_cols=190 Identities=19% Similarity=0.258 Sum_probs=129.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
.+.+++|.+..++.+.+.+.. ...+..+||+||||+|||++|+++++.+......
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~--------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKN--------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 466788999988887765521 2234568999999999999999999998633110
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1068)
...++.++... ...... +++++..+.. ....+++|||+|.+.. ...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~----~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~~~ 136 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS--NNGVDD----IREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAFNA 136 (355)
T ss_pred HHHhcCCCCCEEEeeccc--cCCHHH----HHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHHHH
Confidence 12233333321 112222 3344443332 2345999999998831 22344
Q ss_pred HHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHH
Q 001491 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1068)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~l 769 (1068)
|+..++.... .+.+|++++.++.+.+.+++ |+. .+++++|+.+++.+++...+...++.++++.+..+
T Consensus 137 Ll~~le~~~~---------~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l 204 (355)
T TIGR02397 137 LLKTLEEPPE---------HVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELI 204 (355)
T ss_pred HHHHHhCCcc---------ceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555554322 36777777888888888888 765 78999999999999999999988999999999999
Q ss_pred hhccCCCCchhHHHHHHHHH
Q 001491 770 ASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 770 a~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+..+.| +++.+.+.++.+.
T Consensus 205 ~~~~~g-~~~~a~~~lekl~ 223 (355)
T TIGR02397 205 ARAADG-SLRDALSLLDQLI 223 (355)
T ss_pred HHHcCC-ChHHHHHHHHHHH
Confidence 988876 5566666555544
No 164
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.3e-11 Score=142.88 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=115.1
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
+..|+++.|++.+.+.+...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 367999999999999988877531 223457999999999999999999987532
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
++.+++.. ...-..++++...+.. +...|++|||+|.+ .....+.||+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~naLLk~ 142 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSFNALLKT 142 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHHHHHHHH
Confidence 22222211 1223456777666532 23469999999998 45678899999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ....+.+|++|+.++.+.+.+.. |+ ..+.|.+|+.++..++++..+++.
T Consensus 143 lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~ 194 (363)
T PRK14961 143 LEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKE 194 (363)
T ss_pred Hhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 873 44566677778888889888887 66 568999999999999999887764
No 165
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2.2e-11 Score=148.29 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=133.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCcee----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~---------- 621 (1068)
.|.+++|.+.+++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.......
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~--------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKS--------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 577889998888777765532 12235589999999999999999999987432100
Q ss_pred -----eeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 001491 622 -----AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (1068)
Q Consensus 622 -----~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (1068)
..++.++.. .....+.++..+..+-.........|++|||+|.+.. ...+.|+..+++
T Consensus 82 ~~~~~~Dvieidaa--sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLEE 144 (725)
T PRK07133 82 NVNNSLDIIEMDAA--SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLEE 144 (725)
T ss_pred hhcCCCcEEEEecc--ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhhc
Confidence 011112211 1112333444333322222224456999999999842 234556666776
Q ss_pred hccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCC
Q 001491 697 YGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1068)
Q Consensus 697 ~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~ 776 (1068)
... .+++|.+|+.++.+.+.+++ |+. .+.|.+++.++...++...+.+.++.++++++..+|..+.|
T Consensus 145 PP~---------~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G- 211 (725)
T PRK07133 145 PPK---------HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG- 211 (725)
T ss_pred CCC---------ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 442 37777788888999999998 765 78999999999999999988888899999999999998887
Q ss_pred CchhHHHHHHHHH
Q 001491 777 DAYDLEILVDRTV 789 (1068)
Q Consensus 777 s~~DL~~Lv~~a~ 789 (1068)
+.+++..+++.+.
T Consensus 212 slR~AlslLekl~ 224 (725)
T PRK07133 212 SLRDALSIAEQVS 224 (725)
T ss_pred CHHHHHHHHHHHH
Confidence 5566666666543
No 166
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.34 E-value=2.6e-11 Score=142.89 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=110.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
.+++|+||||||||++|+++|+.++ ..+..+++... ....++..+.............+|||||+|.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~------~~~~~l~a~~~---~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~- 106 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATD------APFEALSAVTS---GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK- 106 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecccc---cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-
Confidence 5799999999999999999999876 55666766532 2233344333333222233567999999999841
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecC--CCCCCChhhhcCCcccccccCCCCCHHHHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ--SLEKIPQSLTSSGRFDFHVQLPAPAASERKA 748 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn--~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~ 748 (1068)
...+.|+..++. +.+++|++++ ....+++++++ |+ ..+.+++++.++...
T Consensus 107 --------------~~q~~LL~~le~-----------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 107 --------------AQQDALLPHVED-----------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQ 158 (413)
T ss_pred --------------HHHHHHHHHhhc-----------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHH
Confidence 223344444443 1366666543 34578899999 77 478999999999999
Q ss_pred HHHHHHhhc--cc-cCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 749 ILEHEIQRR--SL-ECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 749 IL~~~l~~~--~l-~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+++..+... ++ .++++.+..+++.+.| +++.+.++++.+.
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 999877642 33 7888999999998855 5666666666554
No 167
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.7e-11 Score=146.01 Aligned_cols=195 Identities=20% Similarity=0.250 Sum_probs=133.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~divGq~~v~~~L~~~i~~--------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQ--------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 477889998888777665422 1223458999999999999999999998643210
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...++.++... ....+.++..+.............|+||||+|.+.. .-.+.|+..
T Consensus 80 ~~i~~~~~~d~~ei~~~~--~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS--NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc--cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHH
Confidence 01233333321 122334443333221111123346999999999841 234456666
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.+|.+|+.+..+.+.+++ |.. .++|++++.++....+...+...++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIL~t~d~~kil~tI~S--Rc~-~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s 210 (527)
T PRK14969 143 LEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAA 210 (527)
T ss_pred HhCCCC---------CEEEEEEeCChhhCchhHHH--HHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 666432 36777777888888888888 654 789999999999999999888888889999999999988
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
.| +.+++.++++.++.
T Consensus 211 ~G-slr~al~lldqai~ 226 (527)
T PRK14969 211 AG-SMRDALSLLDQAIA 226 (527)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 67777788877654
No 168
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=3.4e-11 Score=143.25 Aligned_cols=196 Identities=18% Similarity=0.183 Sum_probs=134.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
++.+++|.+...+.+...+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~--------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDN--------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 467889998887777665521 1234557999999999999999999998532211
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...++.++... ......++..+.............|++|||+|.+.. ...+.|+..
T Consensus 78 ~~~~~~~h~dv~eldaas--~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~NALLK~ 140 (535)
T PRK08451 78 QSALENRHIDIIEMDAAS--NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAFNALLKT 140 (535)
T ss_pred HHHhhcCCCeEEEecccc--ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHH
Confidence 11223333211 112334443332211111112235999999999841 344566777
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.+|.+|+.+..+.+.+++ |.. .++|.+++.++..+.+...+...++.++++++..++...
T Consensus 141 LEEpp~---------~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s 208 (535)
T PRK08451 141 LEEPPS---------YVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSG 208 (535)
T ss_pred HhhcCC---------ceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 776543 36677777888899999999 644 889999999999999999999889999999999999988
Q ss_pred CCCCchhHHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~~ 791 (1068)
.| +.+++..+++.++..
T Consensus 209 ~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred CC-cHHHHHHHHHHHHHh
Confidence 87 778888888776643
No 169
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.3e-11 Score=146.81 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=119.1
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
+..|+++.|++.+.+.|...+... +.+.++||+||+|||||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 468999999999999988876531 234689999999999999999999988542
Q ss_pred --------------EEEEecchhhhhhccccHHHHHHHHHHHhcC----CCeEEEEecCCccCCCCCCCCCCcchHHHHH
Q 001491 906 --------------FISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 967 (1068)
Q Consensus 906 --------------~i~v~~~el~~~~~g~se~~l~~lf~~a~~~----~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~ 967 (1068)
+++++..+ ......++++++.+... ...|++|||+|.+ ....++.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~na 147 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAFNA 147 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHHHH
Confidence 22222111 12346778888777533 4569999999998 4577899
Q ss_pred HHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 968 FLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 968 lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|++.|+ +....+++|++|+.++.+.+.+++ |+ ..+.|.+++.++..++++..+++.
T Consensus 148 LLk~LE--epp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 148 LLKTLE--EPPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred HHHHHh--hcCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHc
Confidence 999997 345567777778888889999987 66 468899999999999999888764
No 170
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.32 E-value=3.9e-11 Score=136.63 Aligned_cols=175 Identities=21% Similarity=0.332 Sum_probs=121.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
++.+++|.+...+.+...+.. ...+..+||+||||+|||++++++++.++ ..+.+++++.
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~lll~G~~G~GKT~la~~l~~~~~------~~~~~i~~~~ 78 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKK--------------GRIPNMLLHSPSPGTGKTTVAKALCNEVG------AEVLFVNGSD 78 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhc--------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC------ccceEeccCc
Confidence 567788888887777665531 22345577799999999999999999875 5677888877
Q ss_pred ccccchhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcE
Q 001491 632 LSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V 710 (1068)
+. ...++..+......... ..+.+|+|||+|.+.. . .....|...++.+.. .+
T Consensus 79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~----~~~~~L~~~le~~~~---------~~ 132 (316)
T PHA02544 79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------A----DAQRHLRSFMEAYSK---------NC 132 (316)
T ss_pred --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------H----HHHHHHHHHHHhcCC---------Cc
Confidence 22 34444434433332221 3567999999998721 1 122344555555432 36
Q ss_pred EEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHH-------hhccccCCHHHHHHHhhccCC
Q 001491 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI-------QRRSLECSDEILLDVASKCDG 775 (1068)
Q Consensus 711 ~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l-------~~~~l~~~~~~l~~la~~t~g 775 (1068)
.+|+++|.+..+.+++++ ||. .+.++.|+.+++.++++.++ ...+..++++++..++....|
T Consensus 133 ~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 133 SFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred eEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 788899999999999999 886 78999999999987766433 335677888888888877654
No 171
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.32 E-value=1.3e-11 Score=145.47 Aligned_cols=150 Identities=24% Similarity=0.367 Sum_probs=112.6
Q ss_pred CCCCCCCchhHHHHH---HHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhh
Q 001491 841 SGWDDVGGLTDIQNA---IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~---l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~ 917 (1068)
..++++.|++++... +...+... ...+++|+||||||||++|+++|+.++.+|+.++....
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 568888898887544 66665421 22489999999999999999999999999999887432
Q ss_pred hccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEe-CCCC-C
Q 001491 918 YIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA-TSRP-D 991 (1068)
Q Consensus 918 ~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viat-Tn~~-d 991 (1068)
....++.+++.+. .+...||||||+|.+ .....+.|+..|+. +.+++|++ |..+ .
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le~----~~iilI~att~n~~~ 133 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVED----GTITLIGATTENPSF 133 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhhc----CcEEEEEeCCCChhh
Confidence 2345666766663 335679999999998 45667788888753 34555554 4333 4
Q ss_pred CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 992 LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 992 ~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.+++++++ |+ ..+.|.+++.++...+++..+...
T Consensus 134 ~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 134 EVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred hccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHh
Confidence 68999998 77 678999999999999999887664
No 172
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.32 E-value=2e-11 Score=152.69 Aligned_cols=231 Identities=18% Similarity=0.260 Sum_probs=145.8
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1068)
+..|++..++.|++.+...... ....+..++|+||||+|||++++.+|+.++ ..+..+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~---------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~------~~~~~i~~~~~~d 387 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV---------NKIKGPILCLVGPPGVGKTSLGQSIAKATG------RKYVRMALGGVRD 387 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc---------ccCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEEcCCCCC
Confidence 4788999999998877543221 112334599999999999999999999987 4555565544321
Q ss_pred ---------cchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh-----ccc
Q 001491 635 ---------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY-----GEK 700 (1068)
Q Consensus 635 ---------~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~-----~~~ 700 (1068)
.+.+.....+...+..+....| |++|||+|.+.+. ..+ .....|++.+|.- ...
T Consensus 388 ~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~---~~g--------~~~~aLlevld~~~~~~~~d~ 455 (784)
T PRK10787 388 EAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSD---MRG--------DPASALLEVLDPEQNVAFSDH 455 (784)
T ss_pred HHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccc---cCC--------CHHHHHHHHhccccEEEEecc
Confidence 1222222233333443332334 8999999998531 111 1123444544421 100
Q ss_pred -cCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhh----------ccccCCHHHHHHH
Q 001491 701 -RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----------RSLECSDEILLDV 769 (1068)
Q Consensus 701 -~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~----------~~l~~~~~~l~~l 769 (1068)
-....+..++++|+|+|.. .++++|++ ||. .+.+.+++.++..+|.+.++.. ..+.++++++..+
T Consensus 456 ~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~i 531 (784)
T PRK10787 456 YLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGI 531 (784)
T ss_pred cccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHH
Confidence 0011234579999999987 59999999 996 7899999999999999877741 1345788888887
Q ss_pred hhc-cCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhh
Q 001491 770 ASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1068)
Q Consensus 770 a~~-t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al 820 (1068)
+.. +..+-.|.|+..+++.+...+.+...... .....++.+++.+.+
T Consensus 532 i~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~----~~~v~v~~~~~~~~l 579 (784)
T PRK10787 532 IRYYTREAGVRSLEREISKLCRKAVKQLLLDKS----LKHIEINGDNLHDYL 579 (784)
T ss_pred HHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCC----CceeeecHHHHHHHh
Confidence 753 34455688888888877777665432111 112346666665544
No 173
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3.2e-11 Score=146.90 Aligned_cols=195 Identities=21% Similarity=0.207 Sum_probs=135.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..++.+.+.+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDT--------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 477899999888777765532 1234568999999999999999999998743211
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...+++++... ....+.++..+..+-.........|+||||+|++.. .-.+.|+..
T Consensus 80 ~~i~~g~~~d~~eid~~s--~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~naLLk~ 142 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS--NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFNALLKT 142 (576)
T ss_pred HHHhcCCCCCeeeeeccC--ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHHHHHHH
Confidence 11233343322 122333433332221111112335999999999841 334567777
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
+++... .+.+|.+|+.++.+.+.+++ |+. .++|..++.++....+...+.+.++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 143 LEEPPP---------HVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHcCCC---------CeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 776543 37788888888999999998 665 789999999999999999999889999999999999998
Q ss_pred CCCCchhHHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~ 790 (1068)
.| +.+++..+++.++.
T Consensus 211 ~G-~lr~al~~Ldqlia 226 (576)
T PRK14965 211 DG-SMRDSLSTLDQVLA 226 (576)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 87 56676666666543
No 174
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=9.9e-12 Score=144.02 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=114.9
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc---------------
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~--------------- 905 (1068)
..|++++|++.+++.|+..+.....+... .+.+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~---~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAA---AGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccccc---cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 36899999999999999999866543222 223345679999999999999999999876432
Q ss_pred --------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhcc
Q 001491 906 --------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1068)
Q Consensus 906 --------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld 973 (1068)
+..+.. +- ....-..+|++++.+.. ++..|+||||+|.+ .....|.||+.|+
T Consensus 79 ~~~~~hpD~~~i~~-~~----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAP-EG----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecc-cc----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhh
Confidence 111111 10 01123457888887743 34579999999999 5667899999997
Q ss_pred CccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHH
Q 001491 974 GVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILK 1022 (1068)
Q Consensus 974 ~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~ 1022 (1068)
. ...++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+.
T Consensus 143 e--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 143 E--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred c--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHH
Confidence 3 34455555566668999999998 66 579999999998887775
No 175
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=1.9e-11 Score=144.13 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=127.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
.+++||||+|+|||+|++++++++.... ..+.++++..+.......++..-...|.... ....+|+|||++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC
Confidence 5699999999999999999999885332 5567787766543322222211111233322 45679999999998521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCC---CCChhhhcCCccc--ccccCCCCCHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAASE 745 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~L~~aL~~~gRF~--~~i~l~~P~~~e 745 (1068)
. .....+...+....+. . ..+++++...+. .+++.|.+ ||. ..+.+++|+.++
T Consensus 218 ~---------~~qeelf~l~N~l~~~----~-------k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 218 G---------ATQEEFFHTFNSLHTE----G-------KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEG 275 (445)
T ss_pred h---------hhHHHHHHHHHHHHHC----C-------CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHH
Confidence 1 1122344433333321 1 234444444443 46788888 774 688999999999
Q ss_pred HHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHH-HHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA-AVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 746 r~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~-a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
|.+|++..+...++.++++++..++....+ +.+.|...+.+.+.. ++.+. ....++.++..+++.++
T Consensus 276 r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~----------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 276 LRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL----------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh----------hCCCCCHHHHHHHHHHh
Confidence 999999999998999999999999998765 566777766666432 22221 11346777777777654
No 176
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=5.6e-11 Score=138.26 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=127.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc----eeeeEEEE
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~i 627 (1068)
++.+++|.+..++.+.+.+.. ...+.++|||||||+|||++|+++++.+..... ...++..+
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~--------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIEN--------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 467888998888777765532 223467999999999999999999999864211 00112222
Q ss_pred ecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCC
Q 001491 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1068)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1068)
..........+.++..+...........+.+++|||+|.+.. ...+.|+..++....
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~~~-------- 137 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEPPA-------- 137 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCCCC--------
Confidence 222111122233333332221111123456999999998741 223445455544221
Q ss_pred CcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHH
Q 001491 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1068)
Q Consensus 708 ~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1068)
..++|.+++....+.+++.+ |+. .+++++|+.++...++...+.+.++.++++++..++..+.| +.+.+...+++
T Consensus 138 -~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 138 -HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred -ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 25566667777888889988 654 68999999999999999999888999999999999998765 55666666665
Q ss_pred HH
Q 001491 788 TV 789 (1068)
Q Consensus 788 a~ 789 (1068)
..
T Consensus 213 l~ 214 (367)
T PRK14970 213 VV 214 (367)
T ss_pred HH
Confidence 44
No 177
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.31 E-value=1e-10 Score=136.27 Aligned_cols=232 Identities=18% Similarity=0.153 Sum_probs=138.1
Q ss_pred cccchhHHHHHHHHHHH-hcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccc
Q 001491 556 LSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1068)
Q Consensus 556 l~G~~~~~~~i~~~l~~-ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1068)
++|.+.+++.+...+.. ................+.+++||+||||||||++|+++|+.++ .+++.+++..+..
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------~pf~~id~~~l~~ 146 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------VPFAIADATTLTE 146 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------CCceecchhhccc
Confidence 67888888877554421 1110000000000112347799999999999999999999987 6788888877653
Q ss_pred -cchhh-HHHHHHHHHHH----HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCcc
Q 001491 635 -EKGPI-IRQALSNFISE----ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSS 704 (1068)
Q Consensus 635 -~~~~~-~~~~l~~~f~~----a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~ 704 (1068)
.+.|. ....+..++.. .....++||||||+|.+...+...... .......+.+.|+++|++.. ......
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~-~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSIT-RDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcC-CCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 23332 33444444432 223467899999999997542211110 00111245666777776421 111111
Q ss_pred cCCCcEEEEEecCCCC----------------------------------------------------CCChhhhcCCcc
Q 001491 705 CGIGPIAFVASAQSLE----------------------------------------------------KIPQSLTSSGRF 732 (1068)
Q Consensus 705 ~~~~~V~vIattn~~~----------------------------------------------------~L~~aL~~~gRF 732 (1068)
....+.++|.|+|-.- .+.|++. +|+
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRl 303 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRL 303 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCC
Confidence 1112334444433300 0123333 489
Q ss_pred cccccCCCCCHHHHHHHHHH----HHh-------h--ccccCCHHHHHHHhhc--cCCCCchhHHHHHHHHHHHHHhhh
Q 001491 733 DFHVQLPAPAASERKAILEH----EIQ-------R--RSLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (1068)
Q Consensus 733 ~~~i~l~~P~~~er~~IL~~----~l~-------~--~~l~~~~~~l~~la~~--t~g~s~~DL~~Lv~~a~~~a~~r~ 796 (1068)
+..+.|.+.+.+++.+|+.. +++ . ..+.+++++++.|++. ...+-+|.|+.++++.+...+.+.
T Consensus 304 d~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 304 PVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 98899999999999999872 222 2 2345899999999986 456778999999999888777654
No 178
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=6.2e-11 Score=142.50 Aligned_cols=192 Identities=17% Similarity=0.222 Sum_probs=129.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+.....
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~--------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQE--------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 467788888776666554421 112356999999999999999999999874311
Q ss_pred ------eeeeEEEEecccccccchhhHHHHHHHHHHHH-HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001491 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1068)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a-~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1068)
....++.++... ....+.++. +.+.+... ......|+||||+|.+.. ...+.|+.
T Consensus 80 ~~i~~g~hpDv~eId~a~--~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a~naLLk 141 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS--NRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTR---------------EAFNALLK 141 (624)
T ss_pred HHHhcCCCCceEEEeccc--ccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCH---------------HHHHHHHH
Confidence 011234443321 122334443 22222222 223456999999999841 33455666
Q ss_pred HHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhc
Q 001491 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1068)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1068)
.+++... .+++|++|+.+..+.+.+++ |+. .++|++++.++...+|+..+...++.++++.+..++..
T Consensus 142 ~LEEP~~---------~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 142 TLEEPPA---------RVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HhhccCC---------CEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665432 37788888888888888888 765 78999999999999999988888888999999999998
Q ss_pred cCCCCchhHHHHHHHH
Q 001491 773 CDGYDAYDLEILVDRT 788 (1068)
Q Consensus 773 t~g~s~~DL~~Lv~~a 788 (1068)
+.| +.+++..+++++
T Consensus 210 s~G-dlR~Al~lLeql 224 (624)
T PRK14959 210 AAG-SVRDSMSLLGQV 224 (624)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 876 445555555543
No 179
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.31 E-value=2.3e-11 Score=138.48 Aligned_cols=160 Identities=15% Similarity=0.224 Sum_probs=113.3
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhh
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~ 918 (1068)
.+..++++.|.+++++.+...+... +.+..+||+||||+|||++|+++++..+.+++.+++.+ .+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 3467899999999999988887521 12345566999999999999999999999999988866 21
Q ss_pred ccccHHHHHHHHHHH-hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhh
Q 001491 919 IGASEQAVRDIFSKA-TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAAL 997 (1068)
Q Consensus 919 ~g~se~~l~~lf~~a-~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al 997 (1068)
+......+....... ....++||+|||+|.+. .....+.|...|+. ...++.+|+|||.++.+++++
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~--~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEA--YSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHh--cCCCceEEEEcCChhhchHHH
Confidence 111111222221111 11357899999999872 12344555555653 235667788999999999999
Q ss_pred cCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 998 LRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 998 ~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
++ |+. .+.|+.|+.+++..+++.+++..
T Consensus 149 ~s--R~~-~i~~~~p~~~~~~~il~~~~~~~ 176 (316)
T PHA02544 149 RS--RCR-VIDFGVPTKEEQIEMMKQMIVRC 176 (316)
T ss_pred Hh--hce-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 98 874 68999999999999888766554
No 180
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=7.3e-12 Score=149.87 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=115.8
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
+..|++++|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 368999999999999999887632 223457999999999999999999988542
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++++..+ ...-..+|++.+.+. .++..|+||||+|.+ +....|.||+.
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~naLLk~ 142 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSFNALLKT 142 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHHHHHHHH
Confidence 44444332 122345677766553 245579999999999 56789999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ....+.+|++|+.+..+.+.++. |+ ..+.|.+++.++..+.++.++++.
T Consensus 143 LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~e 194 (509)
T PRK14958 143 LEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEE 194 (509)
T ss_pred Hhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 983 44567777777778888888887 55 457899999888888777777664
No 181
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.2e-11 Score=149.03 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=116.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
...|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 468999999999999999887632 334568999999999999999999987542
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++++..+ +..-..+++++..+.. ++..|+||||+|.+ .....+.||+.
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~NALLKt 142 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFNAMLKT 142 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHHHHHHH
Confidence 22222211 1223567787776532 34579999999988 46778999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ..+.+.+|++|+.+..+.+.++. |+ ..+.|..++.++....++.++++.
T Consensus 143 LEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kE 194 (709)
T PRK08691 143 LEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSE 194 (709)
T ss_pred HHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 973 44567777788888888888876 66 347788999999998888888764
No 182
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=6.1e-11 Score=143.93 Aligned_cols=194 Identities=18% Similarity=0.232 Sum_probs=135.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCcee----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~---------- 621 (1068)
+|.+++|.+..++.+.+.+.. ...+.++||+||+|+|||++|+++|+.+.......
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~--------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFET--------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 577899999888877775531 23346799999999999999999999987432100
Q ss_pred -------------eeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHH
Q 001491 622 -------------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1068)
Q Consensus 622 -------------~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1068)
..++.++... ....+.++..+.............|+||||+|.+.. .-.+
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s--~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~n 150 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAAS--HTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAFN 150 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHHH
Confidence 1122222221 122344444333322222223456999999999841 3345
Q ss_pred HHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHH
Q 001491 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1068)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~ 768 (1068)
.|+..+++... .+.+|++|+..+.+.+.+++ |+. .+.|..++.++....++..+.+.+..++++.+..
T Consensus 151 aLLKtLEePp~---------~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~l 218 (598)
T PRK09111 151 ALLKTLEEPPP---------HVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALAL 218 (598)
T ss_pred HHHHHHHhCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 66666776543 36677777887888888888 664 7899999999999999999999999999999999
Q ss_pred HhhccCCCCchhHHHHHHHHH
Q 001491 769 VASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 769 la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
++..+.| +.+++..+++.++
T Consensus 219 Ia~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 219 IARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9999887 6777777777654
No 183
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=2.1e-11 Score=147.85 Aligned_cols=155 Identities=20% Similarity=0.277 Sum_probs=117.8
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
...|++++|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 368999999999999998877632 223347999999999999999999998652
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++++..+ ...-..+|++...+. .++..|+||||+|.+ .....|.||+.
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHHHHHHH
Confidence 23333321 012245666665543 345679999999999 67889999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+ +....+++|++|+.++.|.+.++. |+ ..+.|.+++.++....++.++++.
T Consensus 143 LE--EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 143 LE--EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred HH--cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 98 556677777788888899999988 65 668999999999888888877653
No 184
>PRK04195 replication factor C large subunit; Provisional
Probab=99.30 E-value=2.2e-11 Score=146.27 Aligned_cols=160 Identities=23% Similarity=0.290 Sum_probs=116.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~ 919 (1068)
+..++++.|.+++++.+.+++....+ + +++.++||+||||||||++|+++|+.++.+++.++.++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 46789999999999999988763221 1 22568999999999999999999999999999999876432
Q ss_pred cccHHHHHHHHHHHhc------CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCC
Q 001491 920 GASEQAVRDIFSKATA------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 993 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~------~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~l 993 (1068)
...++.+...+.. ..+.||+|||+|.+.+.. ....++.|+..++. .+..+|+++|.+..+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~~~iIli~n~~~~~ 143 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AKQPIILTANDPYDP 143 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CCCCEEEeccCcccc
Confidence 2233444333322 256799999999985421 22456777777752 233455678888877
Q ss_pred Ch-hhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 994 DA-ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 994 d~-al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
++ .+++ |. ..|.|++|+.+++..+++.++++.
T Consensus 144 ~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 144 SLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred chhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 76 5554 33 579999999999999999888654
No 185
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.29 E-value=2.4e-11 Score=130.60 Aligned_cols=175 Identities=20% Similarity=0.367 Sum_probs=111.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHH-HHHHHHHHHHhcCCeEEEEccchhhhc
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~-~l~~~f~~a~~~~PsILfIDEiD~L~~ 669 (1068)
.+++||||+|+|||+|++++++++..... ...+.|+++.++.......+.. .+.+ |.... ....+|+|||++.+.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~-~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFIREFADALRDGEIEE-FKDRL-RSADLLIIDDIQFLAG 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHH-CTSSEEEEETGGGGTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHHHHHHHHHHcccchh-hhhhh-hcCCEEEEecchhhcC
Confidence 45999999999999999999998753211 2567888887766544333322 1122 22222 3567999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCC---CChhhhcCCccc--ccccCCCCCHH
Q 001491 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 744 (1068)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---L~~aL~~~gRF~--~~i~l~~P~~~ 744 (1068)
....+..+.. +++.+...+ ..+++++...|.. +++.|.+ ||. ..+.+.+|+.+
T Consensus 112 ---------~~~~q~~lf~----l~n~~~~~~-------k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 112 ---------KQRTQEELFH----LFNRLIESG-------KQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDE 169 (219)
T ss_dssp ---------HHHHHHHHHH----HHHHHHHTT-------SEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HH
T ss_pred ---------chHHHHHHHH----HHHHHHhhC-------CeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHH
Confidence 1112233444 444333221 2455555555554 4688888 664 47899999999
Q ss_pred HHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001491 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 745 er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
.|.+|++..+..+++.++++++..++....+ +.++|..++++....
T Consensus 170 ~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 170 DRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765 677787777766543
No 186
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=6.2e-11 Score=143.26 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=134.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..++.+...+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIES--------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 477899999988887776632 1223569999999999999999999998743110
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...++.++... ....+.+++....+..........|+||||+|.+.. ...+.|+..
T Consensus 80 ~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~ 142 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKT 142 (563)
T ss_pred HHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHh
Confidence 01122222111 122334443333222222234556999999999831 234456666
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
++.... .+.+|++++.+..+.+.+++ |+. .++|.+++.++..++++..+...++.++++++..++...
T Consensus 143 LEepp~---------~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s 210 (563)
T PRK06647 143 IEEPPP---------YIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS 210 (563)
T ss_pred hccCCC---------CEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 37777777878889999998 766 688999999999999999988888999999999999988
Q ss_pred CCCCchhHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTV 789 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~ 789 (1068)
.| +.+++..+++.++
T Consensus 211 ~G-dlR~alslLdkli 225 (563)
T PRK06647 211 TG-SVRDAYTLFDQVV 225 (563)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 77 6777777777654
No 187
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=2.8e-11 Score=146.78 Aligned_cols=155 Identities=25% Similarity=0.314 Sum_probs=118.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..|+++.|++.+.+.+...+... +.+..+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 368999999999999998887631 22345899999999999999999998642
Q ss_pred ---------cEEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 905 ---------~~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++.+++.. +..-..+|++...+.. +...|++|||+|.+ +....+.||+.
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHHHH
Confidence 344444321 1234567778777653 34579999999998 56789999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ....+++|++|+.++.|.+.+++ |+. .+.|.+|+.++....++.++++.
T Consensus 143 LEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 143 LEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred hcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHc
Confidence 973 44566666677788999999987 664 47899999999988888887654
No 188
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.29 E-value=5.5e-11 Score=128.83 Aligned_cols=162 Identities=16% Similarity=0.238 Sum_probs=109.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~ 668 (1068)
...+++|+||+|||||+||+++++.+.... ..+.+++|..+... + .......+|+|||+|.+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~~~------------~--~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPLLA------------F--DFDPEAELYAVDDVERLD 103 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhHHH------------H--hhcccCCEEEEeChhhcC
Confidence 456799999999999999999999874222 46777887664311 1 112345799999999873
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCC-CC--CCChhhhcCCcc--cccccCCCCCH
Q 001491 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-LE--KIPQSLTSSGRF--DFHVQLPAPAA 743 (1068)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~-~~--~L~~aL~~~gRF--~~~i~l~~P~~ 743 (1068)
. .....+ ...++...... ..+++.+++. +. .+.+.+.+ || ...+++++|+.
T Consensus 104 ~-----------~~~~~L----~~~~~~~~~~~-------~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~ 159 (227)
T PRK08903 104 D-----------AQQIAL----FNLFNRVRAHG-------QGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSD 159 (227)
T ss_pred c-----------hHHHHH----HHHHHHHHHcC-------CcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCH
Confidence 1 111233 33333322211 2334444433 22 24567777 66 46889999999
Q ss_pred HHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 744 SERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 744 ~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
+++..++...+...++.++++.+..++....| +.+++..+++.....+
T Consensus 160 ~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 160 ADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 99999999888888999999999999996555 7888888888754433
No 189
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=1.5e-11 Score=153.75 Aligned_cols=155 Identities=18% Similarity=0.261 Sum_probs=115.1
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
...|++++|++.+++.|...+..- +....+||+||+|||||++|+++|+.+.+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 368999999999999998887631 22234899999999999999999999853
Q ss_pred -----------cEEEEecchhhhhhccccHHHHHHHHHHH----hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHH
Q 001491 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1068)
Q Consensus 905 -----------~~i~v~~~el~~~~~g~se~~l~~lf~~a----~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL 969 (1068)
+++.++.... ..-..+|++.+++ ...+..|+||||+|++ +....|.||
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~a~NaLL 141 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQGFNALL 141 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHHHHHHHH
Confidence 2233332111 1123455544333 2345679999999999 678899999
Q ss_pred HhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 970 ~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+.|+ +....+++|++|+.++.|-+.++. |. .+|.|..++.++..++++.++++.
T Consensus 142 K~LE--EpP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 142 KIVE--EPPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred HHHh--CCCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence 9998 445677777788888888888887 54 568999999999888888877654
No 190
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=6.7e-11 Score=137.17 Aligned_cols=195 Identities=16% Similarity=0.166 Sum_probs=122.7
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1068)
.|++++|.+..++.+.+.+..-.. .+..++...+..+||+||+|+|||++|+++|+.+.....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~-----~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA-----DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc-----cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 366888999988888776643211 122233445677999999999999999999998864321
Q ss_pred -----eeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 001491 620 -----LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1068)
Q Consensus 620 -----~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1068)
....+.++.+.. ..-..+.++..++............|+||||+|.+.. ...+.|+..+
T Consensus 78 ~~~~~~hpD~~~i~~~~-~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------~aanaLLk~L 141 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEG-LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------RAANALLKAV 141 (394)
T ss_pred HHhcCCCCCEEEecccc-ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------HHHHHHHHHh
Confidence 001122333322 1122334443332222212223445999999999841 2235566667
Q ss_pred HhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccC
Q 001491 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (1068)
Q Consensus 695 d~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~ 774 (1068)
++... ++++|.+|+.++.+.+.++| |+. .+.|++|+.++..+++... . .++++.+..++..+.
T Consensus 142 Eep~~---------~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~---~--~~~~~~a~~la~~s~ 204 (394)
T PRK07940 142 EEPPP---------RTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRR---D--GVDPETARRAARASQ 204 (394)
T ss_pred hcCCC---------CCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHh---c--CCCHHHHHHHHHHcC
Confidence 66432 24455555558899999999 764 8899999999987777631 1 256777888899999
Q ss_pred CCCchhHHHH
Q 001491 775 GYDAYDLEIL 784 (1068)
Q Consensus 775 g~s~~DL~~L 784 (1068)
|..++.++.+
T Consensus 205 G~~~~A~~l~ 214 (394)
T PRK07940 205 GHIGRARRLA 214 (394)
T ss_pred CCHHHHHHHh
Confidence 9776554433
No 191
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.6e-11 Score=144.88 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=119.5
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC----------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---------------- 903 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g---------------- 903 (1068)
+..|++++|++.+.+.|...+..- +.+.++||+||+|+|||++|+++|+.+.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 468999999999999998776531 3345799999999999999999998642
Q ss_pred --------CcEEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 904 --------LRFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 904 --------~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
.+++++++++- ..-..+|++.+.+.. +...|++|||+|.+ +...+|.|++.
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHHHHHHH
Confidence 24555555421 233567888777643 34579999999998 56789999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ....+.+|++|+.++.+.+.++. |+ ..+.|.+++.++..+.++.++++.
T Consensus 140 LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 140 LEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred HhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHc
Confidence 983 44567777778888889999887 55 458999999999999998888764
No 192
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=7.2e-11 Score=128.28 Aligned_cols=163 Identities=23% Similarity=0.329 Sum_probs=108.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
..++|+||+|||||+|+++++.++.... ..+.+++..++. ..+.+.+... ....+|+|||++.+.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQ 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCC
Confidence 4599999999999999999999875432 345556554422 1222333322 34569999999988521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecC-CCCCC---ChhhhcCCcc--cccccCCCCCHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ-SLEKI---PQSLTSSGRF--DFHVQLPAPAAS 744 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn-~~~~L---~~aL~~~gRF--~~~i~l~~P~~~ 744 (1068)
. .....+. +.++..... ...+|+|++ .+..+ .+++.+ || ...+.+++|+.+
T Consensus 109 ~---------~~~~~lf----~l~n~~~~~--------~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e 165 (233)
T PRK08727 109 R---------EDEVALF----DFHNRARAA--------GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDV 165 (233)
T ss_pred h---------HHHHHHH----HHHHHHHHc--------CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHH
Confidence 1 1112333 333332211 133444444 55554 688998 76 457899999999
Q ss_pred HHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 001491 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 745 er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
++.+|++..+..+++.++++++..++.++.| +.+.+.+++++...
T Consensus 166 ~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~ 210 (233)
T PRK08727 166 ARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDR 210 (233)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 9999999988888999999999999999875 34444444665543
No 193
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.28 E-value=5.7e-11 Score=146.88 Aligned_cols=161 Identities=20% Similarity=0.325 Sum_probs=109.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHH-HhcCCeEEEEccchhhhc
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIIS 669 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a-~~~~PsILfIDEiD~L~~ 669 (1068)
.+++|+||||||||++|+++++.+. ..+..+++.... ...++..+....... ......+|||||+|.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~------~~f~~lna~~~~---i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTR------AHFSSLNAVLAG---VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc------Ccceeehhhhhh---hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 5799999999999999999999876 456666664321 122333333221111 123457999999999831
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCC--CCCCChhhhcCCcccccccCCCCCHHHHH
Q 001491 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1068)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~--~~~L~~aL~~~gRF~~~i~l~~P~~~er~ 747 (1068)
...+.|...++. +.+++|++++. ...+++++.+ |.. .+.|++++.+++.
T Consensus 124 ---------------~qQdaLL~~lE~-----------g~IiLI~aTTenp~~~l~~aL~S--R~~-v~~l~pLs~edi~ 174 (725)
T PRK13341 124 ---------------AQQDALLPWVEN-----------GTITLIGATTENPYFEVNKALVS--RSR-LFRLKSLSDEDLH 174 (725)
T ss_pred ---------------HHHHHHHHHhcC-----------ceEEEEEecCCChHhhhhhHhhc--ccc-ceecCCCCHHHHH
Confidence 112334444432 13677766543 3457889998 543 6899999999999
Q ss_pred HHHHHHHh-------hccccCCHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 001491 748 AILEHEIQ-------RRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 748 ~IL~~~l~-------~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
.+++..+. ..++.++++.+..++..+.| +.+.+.++++.++.
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99998887 34577899999999998855 67777777777653
No 194
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=3.7e-11 Score=143.50 Aligned_cols=155 Identities=21% Similarity=0.283 Sum_probs=115.8
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..|+++.|++.+.+.|...+... +.+..+||+||||||||++|+++|+.+.+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 368999999999999998887631 22234699999999999999999998743
Q ss_pred --------cEEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhc
Q 001491 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1068)
Q Consensus 905 --------~~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~L 972 (1068)
+++.++..+ ...-..++++...+.. ..+.|++|||+|.+ ....++.|+..|
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHHHHHH
Confidence 134444321 1223456666554432 35679999999987 467789999999
Q ss_pred cCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 973 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 973 d~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+. ....+++|++|+.+..+.+.+.+ |+. .+.|.+|+.++..+.++.++++.
T Consensus 141 Ee--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~e 191 (504)
T PRK14963 141 EE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAE 191 (504)
T ss_pred Hh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHc
Confidence 73 34567777788888899999987 654 68999999999999998888764
No 195
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.28 E-value=1.8e-11 Score=131.63 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=113.9
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC------cEEEEecc
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------RFISVKGP 912 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~------~~i~v~~~ 912 (1068)
.+..++++.|++.+.+.|+..+.. +...++|||||||||||+.|+++|+++.. .+.+.+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 346799999999999999998774 22358999999999999999999999854 23344444
Q ss_pred hhhhhhccccHHHHHHHHHHHhcC----------CCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEE
Q 001491 913 ELLNKYIGASEQAVRDIFSKATAA----------APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVF 982 (1068)
Q Consensus 913 el~~~~~g~se~~l~~lf~~a~~~----------~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~ 982 (1068)
+..+.-++.. .+ .-|.+.... .+.|++|||+|.+ +....++|..-|+. ..+.+.
T Consensus 98 derGisvvr~--Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~--~s~~tr 161 (346)
T KOG0989|consen 98 DERGISVVRE--KI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED--FSRTTR 161 (346)
T ss_pred ccccccchhh--hh-cCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc--cccceE
Confidence 4433222111 11 112222111 1269999999999 67889999999985 445566
Q ss_pred EEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 983 VFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 983 viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+|..||..+.|...+.. |..+ +.|+....+...+.++.++.+-
T Consensus 162 FiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E 204 (346)
T KOG0989|consen 162 FILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKE 204 (346)
T ss_pred EEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHh
Confidence 66679999998888887 6654 6788888888888888777664
No 196
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=4.2e-11 Score=142.63 Aligned_cols=194 Identities=18% Similarity=0.233 Sum_probs=129.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
.|.+++|.+..+..+.+.+.. ...+..+|||||+|+|||++|+.+|+.+......
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKL--------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred cHHHccChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 467888998888877765522 1123458999999999999999999998632110
Q ss_pred -------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
...++.++... ....+.++.....+-.........|++|||+|.+.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas--~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~ 142 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS--NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKT 142 (486)
T ss_pred HHHhcCCCCcEEEEeCcc--CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHH
Confidence 01122232211 122233333222211111223456999999998841 223445555
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhcc
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t 773 (1068)
++.... .+++|.+++.++.+.+.+.+ |+. .+.+++++.+++..++...+...++.++++++..++..+
T Consensus 143 LEepp~---------~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s 210 (486)
T PRK14953 143 LEEPPP---------RTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS 210 (486)
T ss_pred HhcCCC---------CeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 555332 25566666777888888888 665 689999999999999999999889999999999999988
Q ss_pred CCCCchhHHHHHHHHH
Q 001491 774 DGYDAYDLEILVDRTV 789 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~ 789 (1068)
.| +.+++..+++.+.
T Consensus 211 ~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 211 EG-GMRDAASLLDQAS 225 (486)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 5677777777665
No 197
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.27 E-value=1.1e-10 Score=124.10 Aligned_cols=180 Identities=23% Similarity=0.296 Sum_probs=132.5
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhh
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 916 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~ 916 (1068)
.+.++++.|++..++.+.+..+..+.. .+..|+||+|+.|||||++++++...+ |+.++++...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~- 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG- 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc-
Confidence 478999999999999998776543221 356799999999999999999999877 8899999876653
Q ss_pred hhccccHHHHHHHHHHHhcC-CCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--ccCcEEEEEeCCCCCCC
Q 001491 917 KYIGASEQAVRDIFSKATAA-APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VLTGVFVFAATSRPDLL 993 (1068)
Q Consensus 917 ~~~g~se~~l~~lf~~a~~~-~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--~~~~v~viatTn~~d~l 993 (1068)
.+.++++..+.. .+=|||+|++. +...+.-.+.|-..|+|.. ..++|+|.||+||-.++
T Consensus 93 --------~l~~l~~~l~~~~~kFIlf~DDLs----------Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 93 --------DLPELLDLLRDRPYKFILFCDDLS----------FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred --------cHHHHHHHHhcCCCCEEEEecCCC----------CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 345566655432 34499999853 3345667788889998764 34589999999987765
Q ss_pred ChhhcC----------C-----------CCcceEEEcCCCCHHHHHHHHHHHHHhhccCCCCCc-hhhHHHHHHHHHhh
Q 001491 994 DAALLR----------P-----------GRLDRLLFCDFPSPRERLDILKVISRKVCDTSIPFS-SLFCNELLICKLWH 1050 (1068)
Q Consensus 994 d~al~r----------~-----------gRfd~~i~~~~p~~~~r~~Il~~~l~~~~~~~id~~-~l~~~~~~~~~l~~ 1050 (1068)
..-+.. + .||.-+|.|.+|++++.++|.+..+++. .+++. +....+++.+++.|
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~---g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY---GLELDEEELRQEALQWALRR 230 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHc
Confidence 433221 1 3999999999999999999999999775 44444 33344455555444
No 198
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=2.7e-11 Score=146.21 Aligned_cols=155 Identities=17% Similarity=0.281 Sum_probs=115.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+.+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 368999999999999999887632 22234799999999999999999988753
Q ss_pred -----------cEEEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHH
Q 001491 905 -----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1068)
Q Consensus 905 -----------~~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL 969 (1068)
++++++++.. ..-..+|++.+.+. .....|++|||+|.+ +....|.||
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHHHHHH
Confidence 2233332211 11244555554442 234569999999998 567899999
Q ss_pred HhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 970 ~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+.|+ +....+++|++|+.++.|.+.++. |. ..+.|..++.++..+.++.++++.
T Consensus 140 K~LE--Epp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~e 193 (584)
T PRK14952 140 KIVE--EPPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQE 193 (584)
T ss_pred HHHh--cCCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence 9998 455678888888888899999987 54 568999999999888888877764
No 199
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.4e-10 Score=137.41 Aligned_cols=193 Identities=21% Similarity=0.235 Sum_probs=131.2
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..++.+.+.+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~--------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRF--------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 577889999888877665522 1234569999999999999999999998643110
Q ss_pred --------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001491 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1068)
Q Consensus 621 --------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1068)
...++.++... ....+.++...+.+..........|+||||+|.+.. ...+.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~--~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGAS--HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeeccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHHHH
Confidence 01223332211 112233443322222122224567999999999841 23455666
Q ss_pred HHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhc
Q 001491 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1068)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1068)
.++.... .+.+|++++.+..+.+.+++ |+. .++|++++.++....+...+.+.+..++++.+..++..
T Consensus 144 ~lEep~~---------~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 144 TLEEPPQ---------HVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HhhcCCC---------CceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6666432 36677777888889999998 665 78999999999999999988888889999999999999
Q ss_pred cCCCCchhHHHHHHHH
Q 001491 773 CDGYDAYDLEILVDRT 788 (1068)
Q Consensus 773 t~g~s~~DL~~Lv~~a 788 (1068)
+.| +.+++.++++..
T Consensus 212 s~g-dlr~a~~~Lekl 226 (451)
T PRK06305 212 AQG-SLRDAESLYDYV 226 (451)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 876 555555555544
No 200
>PRK05642 DNA replication initiation factor; Validated
Probab=99.27 E-value=8.8e-11 Score=127.67 Aligned_cols=166 Identities=19% Similarity=0.255 Sum_probs=113.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
.+++|+||+|+|||+|++++++++.... ..+.++++.++.... ..+.+... ...+|+|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~---~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGK 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCC
Confidence 5699999999999999999998875332 456777777655321 11222221 2358999999987421
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCC---ChhhhcCCcc--cccccCCCCCHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRF--DFHVQLPAPAASE 745 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L---~~aL~~~gRF--~~~i~l~~P~~~e 745 (1068)
......+...+ +.+...+ ..++++++..+..+ .+.|++ || ...+.+.+|+.++
T Consensus 113 ---------~~~~~~Lf~l~----n~~~~~g-------~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 113 ---------ADWEEALFHLF----NRLRDSG-------RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDED 170 (234)
T ss_pred ---------hHHHHHHHHHH----HHHHhcC-------CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHH
Confidence 11122344433 3332211 25666666655443 588888 66 4578899999999
Q ss_pred HHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 746 r~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
+.++++..+..+++.+++++++.++.+..+ +.+.+..++++....+
T Consensus 171 ~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 171 KLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQAS 216 (234)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 999999777777899999999999999877 6777877777765444
No 201
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.26 E-value=1.3e-10 Score=132.46 Aligned_cols=211 Identities=18% Similarity=0.218 Sum_probs=134.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
++.++.|.+.+++.+...+.. ....+++|+||||||||++++++++.+..... ...++.++++.
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~---------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~ 78 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE---------------KNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASD 78 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC---------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEecccc
Confidence 466777888777777665421 11235999999999999999999999853321 23344554443
Q ss_pred ccccchhhHHHHHHHHHHHH-Hh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 632 LSLEKGPIIRQALSNFISEA-LD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a-~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
.. ........+....... .. ..+.+++|||+|.+.. .....|...++.+.. .
T Consensus 79 ~~--~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------~~~~~L~~~le~~~~---------~ 132 (319)
T PRK00440 79 ER--GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------DAQQALRRTMEMYSQ---------N 132 (319)
T ss_pred cc--chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------HHHHHHHHHHhcCCC---------C
Confidence 22 1122223333322211 11 2356999999998841 122345555554332 2
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
..+|.+++....+.+.+.+ |+. .+++++++.++...+++..+...++.++++.+..++..+.| +.+.+.+.++.+.
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 4566677777777778888 665 68999999999999999999988999999999999998766 4444444444332
Q ss_pred HHHHhhhcccCCccccccccccchhhhhhhhcccc
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~ 824 (1068)
.. ...++.+++.++.....
T Consensus 209 ~~----------------~~~it~~~v~~~~~~~~ 227 (319)
T PRK00440 209 AT----------------GKEVTEEAVYKITGTAR 227 (319)
T ss_pred Hc----------------CCCCCHHHHHHHhCCCC
Confidence 21 12467777766654433
No 202
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.26 E-value=2.3e-11 Score=146.96 Aligned_cols=159 Identities=22% Similarity=0.307 Sum_probs=112.1
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEE
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 909 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v 909 (1068)
...|+++.|.++..+.+...+.. ..+.++||+||||||||++|+++.+.+ +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 35788999999888888765321 123589999999999999999998653 3578888
Q ss_pred ecchh-------hhhhccccHH----------------HHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHH
Q 001491 910 KGPEL-------LNKYIGASEQ----------------AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 966 (1068)
Q Consensus 910 ~~~el-------~~~~~g~se~----------------~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~ 966 (1068)
++... ....+|.... .-...+.+| ...+|||||++.+ ....++
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L-----------~~~~q~ 193 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGEL-----------HPVQMN 193 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhC-----------CHHHHH
Confidence 87531 1111111000 001122232 3359999999999 567888
Q ss_pred HHHHhccCcc---------------------------ccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHH
Q 001491 967 QFLTELDGVE---------------------------VLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 1019 (1068)
Q Consensus 967 ~lL~~Ld~~~---------------------------~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~ 1019 (1068)
.|+..|+.-. ..+-.+|.+||+.++.|+|++++ |+. .|.|++++.+++.+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHH
Confidence 8888775311 11235677788899999999998 875 57899999999999
Q ss_pred HHHHHHHhh
Q 001491 1020 ILKVISRKV 1028 (1068)
Q Consensus 1020 Il~~~l~~~ 1028 (1068)
|++..+++.
T Consensus 271 Il~~~a~k~ 279 (531)
T TIGR02902 271 IAKNAAEKI 279 (531)
T ss_pred HHHHHHHHc
Confidence 999999875
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.26 E-value=7.8e-11 Score=130.33 Aligned_cols=133 Identities=26% Similarity=0.355 Sum_probs=96.3
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCCcEEEEecc------hhhhhhccccHHHHHH--------------------HHH
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP------ELLNKYIGASEQAVRD--------------------IFS 931 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~------el~~~~~g~se~~l~~--------------------lf~ 931 (1068)
+.++||+||||||||++|+++|+.+|.+++.+++. ++++.+.|.....+.+ .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45899999999999999999999999999998764 4444443322221111 112
Q ss_pred HHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--------------ccCcEEEEEeCCCCC-----C
Q 001491 932 KATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------------VLTGVFVFAATSRPD-----L 992 (1068)
Q Consensus 932 ~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--------------~~~~v~viatTn~~d-----~ 992 (1068)
.|.. .+.+|+|||++.+ ...+.+.|+..|+.-. ...++.||+|+|... .
T Consensus 101 ~A~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 2222 2349999999997 5678888888886321 123567999999763 4
Q ss_pred CChhhcCCCCcceEEEcCCCCHHHHHHHHHHHH
Q 001491 993 LDAALLRPGRLDRLLFCDFPSPRERLDILKVIS 1025 (1068)
Q Consensus 993 ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l 1025 (1068)
+++++++ || ..+++++|+.++..+|++...
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 6899999 88 568999999999999988753
No 204
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=4.1e-11 Score=143.31 Aligned_cols=155 Identities=20% Similarity=0.260 Sum_probs=113.1
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..|+++.|++.+.+.+...+... +.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 367999999999999988877631 22345899999999999999999997753
Q ss_pred ---------cEEEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 905 ---------~~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
++++++...- . .-..++++...+. .+...|+||||+|.+ .....+.||..
T Consensus 80 ~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHHHHHHHH
Confidence 2333332111 1 1234556655543 234579999999998 56789999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+ +..+.+++|++|+.+..+.+.++. |. ..++|.+++.++....++.++++.
T Consensus 143 LE--epp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 143 LE--EPPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred Hh--cCCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHc
Confidence 98 344566666666667888888887 55 668999999999888888877763
No 205
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.25 E-value=7.3e-11 Score=128.52 Aligned_cols=125 Identities=28% Similarity=0.446 Sum_probs=95.0
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCc---EEEEecchhhhhhccccHHHHHHHHHHHhc-----CCCeEEEEecCCccCC
Q 001491 880 NVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAP 951 (1068)
Q Consensus 880 ~lLL~GppGtGKT~lA~alA~~~g~~---~i~v~~~el~~~~~g~se~~l~~lf~~a~~-----~~p~VLfiDEid~l~~ 951 (1068)
.++|+||||||||+||+.++.....+ |++++.. ...-+++|++|+.++. .+..||||||++++
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-- 234 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-- 234 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh--
Confidence 79999999999999999999888554 7777652 3456789999999865 45679999999998
Q ss_pred CCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC-CChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 952 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL-LDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 952 ~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~-ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.+...+.||... +...-.+|-|||..|.. +..||+.++ +++.+.....++...|+.+...-+
T Consensus 235 ---------NksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC---~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 235 ---------NKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRC---RVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred ---------hhhhhhccccee---ccCceEEEecccCCCccchhHHHHhcc---ceeEeccCCHHHHHHHHHHHHHhh
Confidence 345566666554 44444556666777765 889999855 357778888898888888766544
No 206
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=3.7e-11 Score=145.48 Aligned_cols=155 Identities=18% Similarity=0.263 Sum_probs=115.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
...|++++|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 367999999999999999887632 223457999999999999999999987541
Q ss_pred ---------------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHH
Q 001491 906 ---------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVN 966 (1068)
Q Consensus 906 ---------------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~ 966 (1068)
+++++..+ ...-..+|++.+.+.. ++..|++|||+|.+ .....|
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-----------s~~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-----------TNTAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------CHHHHH
Confidence 22222211 1123467777776543 33579999999998 567799
Q ss_pred HHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 967 QFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 967 ~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.||+.|+ +....+.+|++|+.+..+.+.++. |. ..+.|..++.++..+.++.++++.
T Consensus 143 aLLKtLE--EPP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~e 199 (618)
T PRK14951 143 AMLKTLE--EPPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAE 199 (618)
T ss_pred HHHHhcc--cCCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHc
Confidence 9999997 345666677777778888888887 55 568999999999888888777653
No 207
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=3.8e-11 Score=143.54 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=115.7
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..|+++.|++.+.+.+...+... +.+..+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 367999999999999988876521 22356999999999999999999998742
Q ss_pred ---------cEEEEecchhhhhhccccHHHHHHHHHHHhcC----CCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 905 ---------~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~----~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++.+++.. ...-..+|.+...+... ...|++|||+|.+ +....+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STSAWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHHHHHHHHHH
Confidence 233333221 11234567777665432 3469999999998 45678999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+ +....+++|++|+.++.|.+.+++ |+. .+.|.+|+.++....++..+++.
T Consensus 143 LE--EPp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~ke 194 (605)
T PRK05896 143 LE--EPPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKE 194 (605)
T ss_pred HH--hCCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHc
Confidence 97 445567777788888999999988 664 58999999999998888877653
No 208
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.24 E-value=8.9e-11 Score=134.81 Aligned_cols=160 Identities=19% Similarity=0.312 Sum_probs=108.8
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC-----CcEEEEecchh
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPEL 914 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g-----~~~i~v~~~el 914 (1068)
+..++++.|.+++++.+...+... ...+++|+||||||||++|+++++.+. .+++.+++.++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 356888999999999888876521 123799999999999999999999873 34677887665
Q ss_pred hhhh-------------ccc-------cHHHHHHHHHHHhc-----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHH
Q 001491 915 LNKY-------------IGA-------SEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1068)
Q Consensus 915 ~~~~-------------~g~-------se~~l~~lf~~a~~-----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL 969 (1068)
.... .+. ....++.+...... ..+.+|+|||+|.+ .....+.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~~~~~~~L~ 146 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------REDAQQALR 146 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------CHHHHHHHH
Confidence 4221 111 01223333333222 23469999999988 334566677
Q ss_pred HhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 970 ~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
..|+... ....+|++|+.+..+.+.+.+ |+ ..+.|.+|+.++...+++..+++.
T Consensus 147 ~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 147 RIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred HHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 7776432 233445566666677777877 65 468999999999999999887764
No 209
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=4.3e-11 Score=143.84 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=114.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
...|+++.|++.+++.|...+... +....+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 467999999999999999887631 223579999999999999999999998642
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHH----hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a----~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
++++++..- ..-..++.+.+.+ ......|+||||+|.+ +....+.|++.
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~naLLk~ 142 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAFNALLKT 142 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHHHHHHHH
Confidence 334433211 1113344443332 2344579999999998 56778999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ....+++|++|+.++.+.+.+++ |+. .|.|.+++.++..++++..+++.
T Consensus 143 LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 143 LEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred hhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHc
Confidence 973 44567787888888888888887 663 58999999999998888877653
No 210
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.23 E-value=5.1e-11 Score=140.03 Aligned_cols=198 Identities=17% Similarity=0.244 Sum_probs=144.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCcee--eeEEEEec
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV--AHIVFVCC 629 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~--~~~~~i~~ 629 (1068)
.|.+++|.+.....+.+.+.. ..-..+.||.||.|+|||++||.+|+.++...... ..-....|
T Consensus 14 ~F~evvGQe~v~~~L~nal~~--------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALEN--------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHh--------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 467788888877777765522 11235699999999999999999999998653211 11111222
Q ss_pred cccc--------------ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHH
Q 001491 630 SRLS--------------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (1068)
Q Consensus 630 s~l~--------------~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (1068)
..+. ....++++...+.+.......+..|.+|||+|+|. ....+.|+..++
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTLE 144 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTLE 144 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhcccc
Confidence 2222 22344445444444333333455699999999995 244555666666
Q ss_pred hhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCC
Q 001491 696 EYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1068)
Q Consensus 696 ~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g 775 (1068)
+-.. .|.+|.+|+.++.++..+.| |.. ++.|...+.++....+...+.+.++.++++.+..+|+..+|
T Consensus 145 EPP~---------hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 145 EPPS---------HVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred cCcc---------CeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 5432 48999999999999999999 655 67899999999999999999999999999999999999988
Q ss_pred CCchhHHHHHHHHHHH
Q 001491 776 YDAYDLEILVDRTVHA 791 (1068)
Q Consensus 776 ~s~~DL~~Lv~~a~~~ 791 (1068)
+.||...+++.+...
T Consensus 213 -s~RDalslLDq~i~~ 227 (515)
T COG2812 213 -SLRDALSLLDQAIAF 227 (515)
T ss_pred -ChhhHHHHHHHHHHc
Confidence 789999999888754
No 211
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.23 E-value=1.8e-10 Score=131.41 Aligned_cols=136 Identities=20% Similarity=0.282 Sum_probs=87.8
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc-ccCcccCCCcEEEEEecC----CCCCCChhhhcC
Q 001491 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-KRKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (1068)
Q Consensus 655 ~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-~~~~~~~~~~V~vIattn----~~~~L~~aL~~~ 729 (1068)
+.+|+||||||+++......... -....+.+.|+.++++-.- .........+|.||++.- .+.+|-|.|..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~D---vS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGAD---VSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCC---CCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 44699999999998543211111 1223566667777775321 112234445788988754 35556667766
Q ss_pred CcccccccCCCCCHHHHHHHHH----HHHh-------h--ccccCCHHHHHHHhhcc-------CCCCchhHHHHHHHHH
Q 001491 730 GRFDFHVQLPAPAASERKAILE----HEIQ-------R--RSLECSDEILLDVASKC-------DGYDAYDLEILVDRTV 789 (1068)
Q Consensus 730 gRF~~~i~l~~P~~~er~~IL~----~~l~-------~--~~l~~~~~~l~~la~~t-------~g~s~~DL~~Lv~~a~ 789 (1068)
||...+.+.+++.++...||. .+++ . ..+.++++++..+|+.. ++.-+|-|..++++.+
T Consensus 323 -R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 323 -RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999983 2222 2 23558888888887764 3555567777777776
Q ss_pred HHHHhh
Q 001491 790 HAAVGR 795 (1068)
Q Consensus 790 ~~a~~r 795 (1068)
......
T Consensus 402 ~d~~fe 407 (441)
T TIGR00390 402 EDISFE 407 (441)
T ss_pred HHHHhc
Confidence 655443
No 212
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=5.9e-11 Score=144.61 Aligned_cols=160 Identities=20% Similarity=0.281 Sum_probs=117.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEE---ec-----
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV---KG----- 911 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v---~~----- 911 (1068)
+..|+++.|++.+.+.|...+... +.+..+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 468999999999999998887632 2234579999999999999999998875421000 00
Q ss_pred -----chhhhhhcc---ccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccC
Q 001491 912 -----PELLNKYIG---ASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLT 979 (1068)
Q Consensus 912 -----~el~~~~~g---~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~ 979 (1068)
.+++. .-+ .....+|++.+.+.. +...|++|||+|.+ +....+.||..|+ +...
T Consensus 82 ~~~~~~Dvie-idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKtLE--EPP~ 147 (725)
T PRK07133 82 NVNNSLDIIE-MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKTLE--EPPK 147 (725)
T ss_pred hhcCCCcEEE-EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHHhh--cCCC
Confidence 01100 001 123557888777653 34579999999998 4568999999998 4456
Q ss_pred cEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 980 GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 980 ~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.+++|++|+.++.|.+.+++ |+. .+.|.+++.++..+.++..+++.
T Consensus 148 ~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 148 HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHc
Confidence 77777788888999999988 664 68999999999998888776654
No 213
>PRK06620 hypothetical protein; Validated
Probab=99.22 E-value=1.5e-10 Score=123.80 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
..++||||||||||+|++++++..+ .. ++...... .+. . ....+|+|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~------~~--~~~~~~~~-----------~~~----~-~~~d~lliDdi~~~~-- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN------AY--IIKDIFFN-----------EEI----L-EKYNAFIIEDIENWQ-- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC------CE--Ecchhhhc-----------hhH----H-hcCCEEEEeccccch--
Confidence 5699999999999999999988754 21 12211100 011 1 234689999998541
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCC--CChhhhcCCccc--ccccCCCCCHHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD--FHVQLPAPAASER 746 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~--L~~aL~~~gRF~--~~i~l~~P~~~er 746 (1068)
. ..+...+....+. +..++++++..+.. + ++|++ |+. ..+.+.+|+.+++
T Consensus 99 --------~----~~lf~l~N~~~e~-----------g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~ 152 (214)
T PRK06620 99 --------E----PALLHIFNIINEK-----------QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELI 152 (214)
T ss_pred --------H----HHHHHHHHHHHhc-----------CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHH
Confidence 0 1344333333222 13566776666554 5 78888 664 4689999999999
Q ss_pred HHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 747 ~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
.++++..+..+++.+++++++.++.+..+ +.+.+..++++..
T Consensus 153 ~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 194 (214)
T PRK06620 153 KILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENIN 194 (214)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 99999998888899999999999999876 6677777777644
No 214
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=1.5e-10 Score=137.08 Aligned_cols=197 Identities=16% Similarity=0.251 Sum_probs=129.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHH---HHHHHHHHHHhcCCeEEEEccchhh
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ---ALSNFISEALDHAPSIVIFDNLDSI 667 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~---~l~~~f~~a~~~~PsILfIDEiD~L 667 (1068)
.+++|||++|+|||+|++++++++.... ....++++++.++.......+.. .+...... .....+|+|||++.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 4699999999999999999999875321 12566788887766544333322 12222111 145679999999988
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCC---CCChhhhcCCcc--cccccCCCCC
Q 001491 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRF--DFHVQLPAPA 742 (1068)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~---~L~~aL~~~gRF--~~~i~l~~P~ 742 (1068)
.+ .......+...+....+. + ..+++++...|. .+++.|.+ || +..+.+.+|+
T Consensus 219 ~~---------k~~~~e~lf~l~N~~~~~----~-------k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd 276 (450)
T PRK14087 219 SY---------KEKTNEIFFTIFNNFIEN----D-------KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLD 276 (450)
T ss_pred cC---------CHHHHHHHHHHHHHHHHc----C-------CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcC
Confidence 42 111222344444333322 1 123444333443 35788888 66 4568999999
Q ss_pred HHHHHHHHHHHHhhccc--cCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhh
Q 001491 743 ASERKAILEHEIQRRSL--ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1068)
Q Consensus 743 ~~er~~IL~~~l~~~~l--~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al 820 (1068)
.++|.+|+++.+...++ .++++++..|+..+.| ++|.+..++.++...+.... ....++.+.+.+++
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~----------~~~~it~~~v~~~l 345 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP----------EEKIITIEIVSDLF 345 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc----------CCCCCCHHHHHHHH
Confidence 99999999999987665 6899999999999887 78889988888875443320 01346777777766
Q ss_pred ccc
Q 001491 821 HEF 823 (1068)
Q Consensus 821 ~~~ 823 (1068)
.+.
T Consensus 346 ~~~ 348 (450)
T PRK14087 346 RDI 348 (450)
T ss_pred hhc
Confidence 553
No 215
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.21 E-value=1.9e-10 Score=141.51 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=86.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc------ccccch----hhH---HHHHHHHHHHHHhcCCe
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKG----PII---RQALSNFISEALDHAPS 657 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~------l~~~~~----~~~---~~~l~~~f~~a~~~~Ps 657 (1068)
-++||.||..||||+++..+|++.+ ..++.++-.. ..|.++ |.+ +..+-+.++ ..-
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tg------hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-----~Gy 957 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETG------HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-----RGY 957 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhC------ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-----cCc
Confidence 4699999999999999999999988 5566665432 222221 111 222222222 234
Q ss_pred EEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh----ccccCc-ccCCCcEEEEEecCCCC------CCChhh
Q 001491 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY----GEKRKS-SCGIGPIAFVASAQSLE------KIPQSL 726 (1068)
Q Consensus 658 ILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~----~~~~~~-~~~~~~V~vIattn~~~------~L~~aL 726 (1068)
.+++||++... . .+++.|.+++|.. ....+. ...++++.++||-|+|. .+..++
T Consensus 958 WIVLDELNLAp-----------T----DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAF 1022 (4600)
T COG5271 958 WIVLDELNLAP-----------T----DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAF 1022 (4600)
T ss_pred EEEeeccccCc-----------H----HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHH
Confidence 68999997653 1 4455555555542 222222 33345688888888765 356777
Q ss_pred hcCCcccccccCCCCCHHHHHHHHHHHH
Q 001491 727 TSSGRFDFHVQLPAPAASERKAILEHEI 754 (1068)
Q Consensus 727 ~~~gRF~~~i~l~~P~~~er~~IL~~~l 754 (1068)
+. ||- .++|..-..++...||+..+
T Consensus 1023 RN--RFl-E~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1023 RN--RFL-EMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred Hh--hhH-hhhcccCcHHHHHHHHhccC
Confidence 77 887 67888888899999988543
No 216
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.1e-10 Score=138.78 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=128.5
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
.|.+++|.+..+..+...+.. ...+.++||+||+|+|||++|+++|+.+......
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~--------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALIS--------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred cHhhccChHHHHHHHHHHHHc--------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 466788888887777665432 1123569999999999999999999998753110
Q ss_pred ---------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHH
Q 001491 621 ---------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1068)
Q Consensus 621 ---------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (1068)
...++.++.. .....+.+++.+.............|+||||+|.+.. ...+.|+
T Consensus 80 ~C~~i~~g~h~D~~ei~~~--~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naLL 142 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA--SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNALL 142 (620)
T ss_pred HHHHHhcCCCccEEEEecc--ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHHH
Confidence 0122333322 1122334444333222111123346999999999831 3345566
Q ss_pred HHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhh
Q 001491 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1068)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~ 771 (1068)
..+++... .+++|++|+.++.+.+.+++ |+. .++|+.++.++....+...+.+.+..++++.+..++.
T Consensus 143 K~LEePp~---------~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~ 210 (620)
T PRK14948 143 KTLEEPPP---------RVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQ 210 (620)
T ss_pred HHHhcCCc---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 66765432 36777777788888888988 665 6789999999998888888888888899999999999
Q ss_pred ccCCCCchhHHHHHHH
Q 001491 772 KCDGYDAYDLEILVDR 787 (1068)
Q Consensus 772 ~t~g~s~~DL~~Lv~~ 787 (1068)
.+.|. .+++..+++.
T Consensus 211 ~s~G~-lr~A~~lLek 225 (620)
T PRK14948 211 RSQGG-LRDAESLLDQ 225 (620)
T ss_pred HcCCC-HHHHHHHHHH
Confidence 98874 4666666654
No 217
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.21 E-value=1.1e-10 Score=135.08 Aligned_cols=155 Identities=24% Similarity=0.311 Sum_probs=116.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..|+++.|.+.+++.+...+... +.+..+||+||||+|||++|+++|+.+..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 367999999999999988877531 23356899999999999999999988642
Q ss_pred ---------cEEEEecchhhhhhccccHHHHHHHHHHHhcC----CCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 905 ---------~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~----~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++.+++.+ ......+++++..+... ...|++|||+|.+ .....+.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~~~~~~Ll~~ 140 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SKSAFNALLKT 140 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CHHHHHHHHHH
Confidence 233333321 12334577787776442 3469999999988 45678999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ....+++|++|+.++.+.+++++ |+ ..+.|.+|+.++..++++..+++.
T Consensus 141 le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 141 LEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKE 192 (355)
T ss_pred HhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence 974 34567777788888888889887 76 468999999999999999887764
No 218
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.21 E-value=1.8e-10 Score=131.51 Aligned_cols=135 Identities=20% Similarity=0.282 Sum_probs=87.7
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc-ccCcccCCCcEEEEEecC----CCCCCChhhhcC
Q 001491 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-KRKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (1068)
Q Consensus 655 ~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-~~~~~~~~~~V~vIattn----~~~~L~~aL~~~ 729 (1068)
+-+|+||||||+++....... ..-....+.+.|+.++++-.- .........+|.||++.- .+.++-|.|..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~---~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSG---PDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCCC---CCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 346999999999986432211 111223566677777775321 111233445788888753 35566677776
Q ss_pred CcccccccCCCCCHHHHHHHHH----HHHh---------hccccCCHHHHHHHhhcc-------CCCCchhHHHHHHHHH
Q 001491 730 GRFDFHVQLPAPAASERKAILE----HEIQ---------RRSLECSDEILLDVASKC-------DGYDAYDLEILVDRTV 789 (1068)
Q Consensus 730 gRF~~~i~l~~P~~~er~~IL~----~~l~---------~~~l~~~~~~l~~la~~t-------~g~s~~DL~~Lv~~a~ 789 (1068)
||...+.+.+++.++...||. .++. +..+.+++++++.+|+.. ++.-+|-|..++++..
T Consensus 325 -R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 325 -RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999983 2222 223558888888887765 3444567777777776
Q ss_pred HHHHh
Q 001491 790 HAAVG 794 (1068)
Q Consensus 790 ~~a~~ 794 (1068)
.....
T Consensus 404 ~d~~F 408 (443)
T PRK05201 404 EDISF 408 (443)
T ss_pred HHHhc
Confidence 65543
No 219
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.3e-10 Score=132.79 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=126.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
++.+++|.+..++.+...+.. ...+..+||+||||+|||++|+++|+.+......
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~--------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRM--------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred cHhhccChHHHHHHHHHHHHh--------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 467888988887766554421 1234569999999999999999999998642100
Q ss_pred ---------------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHH
Q 001491 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1068)
Q Consensus 621 ---------------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1068)
...+..++... ....+.++.....+-.........++||||+|.+.. .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~--~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------~ 142 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAAS--NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------A 142 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccc--cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------H
Confidence 01122222211 111233333222221111122345999999999841 2
Q ss_pred HHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHH
Q 001491 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (1068)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~ 765 (1068)
-.+.|+..++.... ...+|.+++.+..+.+.+.+ |.. .+++++++.++..+.++..+...+..++++.
T Consensus 143 ~~~~LLk~LEep~~---------~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~a 210 (397)
T PRK14955 143 AFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADA 210 (397)
T ss_pred HHHHHHHHHhcCCC---------CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 23345555554332 25666666777788888888 665 7899999999999999999988888999999
Q ss_pred HHHHhhccCCCCchhHHHHHHHHH
Q 001491 766 LLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 766 l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+..++..+.| +.+.+.+.++++.
T Consensus 211 l~~l~~~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 211 LQLIGRKAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999877 5566666666544
No 220
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.21 E-value=2.8e-11 Score=144.33 Aligned_cols=137 Identities=20% Similarity=0.353 Sum_probs=97.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecchhhhhhccccHHH-HHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQA-VRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~-----g~~~i~v~~~el~~~~~g~se~~-l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
.+++|+||+|||||+|++++|+.+ +..++.+++.++.+.+.+..... ...+....+ .+++|+|||++.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 469999999999999999999887 56788999988877665443221 222222222 4679999999998533
Q ss_pred CCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC---CChhhcCCCCcc--eEEEcCCCCHHHHHHHHHHHHHh
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~---ld~al~r~gRfd--~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
+ .....|+..++.....+..+|++++..|.. +++.+.. ||. .++.+.+|+.++|.+|++..++.
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1 234455555554444445556655555544 6788887 886 47899999999999999999876
Q ss_pred h
Q 001491 1028 V 1028 (1068)
Q Consensus 1028 ~ 1028 (1068)
.
T Consensus 296 ~ 296 (450)
T PRK00149 296 E 296 (450)
T ss_pred c
Confidence 3
No 221
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.21 E-value=3.3e-10 Score=139.07 Aligned_cols=162 Identities=25% Similarity=0.412 Sum_probs=108.9
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEE
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISV 909 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v 909 (1068)
...++++.|.+...+.+...+..+ .+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 357889999988877776554321 23579999999999999999998765 3568888
Q ss_pred ecchhh-------hhhccccHHH----HHHHHHHH----------hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHH
Q 001491 910 KGPELL-------NKYIGASEQA----VRDIFSKA----------TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 968 (1068)
Q Consensus 910 ~~~el~-------~~~~g~se~~----l~~lf~~a----------~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~l 968 (1068)
++..+- ..+.|..... .+..+... ......+|||||++.+ .......|
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~L 285 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNKL 285 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHHH
Confidence 876541 1122221111 11111110 0123359999999988 55667777
Q ss_pred HHhccCcc--------------------------ccCc-EEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHH
Q 001491 969 LTELDGVE--------------------------VLTG-VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL 1021 (1068)
Q Consensus 969 L~~Ld~~~--------------------------~~~~-v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il 1021 (1068)
+..|+.-. .... +++.+||+.++.+++++++ ||. .+.|++++.+++..|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 77775321 0112 4444566778889999987 886 4789999999999999
Q ss_pred HHHHHhh
Q 001491 1022 KVISRKV 1028 (1068)
Q Consensus 1022 ~~~l~~~ 1028 (1068)
+..+++.
T Consensus 363 ~~~a~~~ 369 (615)
T TIGR02903 363 LNAAEKI 369 (615)
T ss_pred HHHHHHc
Confidence 9988864
No 222
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.20 E-value=7.5e-11 Score=145.88 Aligned_cols=151 Identities=22% Similarity=0.314 Sum_probs=106.4
Q ss_pred CCCCCCCCchhHHHH---HHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhh
Q 001491 840 RSGWDDVGGLTDIQN---AIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~---~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~ 916 (1068)
+..++++.|++.+.. .+...+.. ....+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 356888889888763 44454431 122489999999999999999999999999888876421
Q ss_pred hhccccHHHHHHHHHHHh-----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeC-CCC
Q 001491 917 KYIGASEQAVRDIFSKAT-----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT-SRP 990 (1068)
Q Consensus 917 ~~~g~se~~l~~lf~~a~-----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatT-n~~ 990 (1068)
....+++.+..+. .....+|||||+|.+ .....+.|+..|+. +.+++|++| ..+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE~----g~IiLI~aTTenp 148 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVEN----GTITLIGATTENP 148 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhcC----ceEEEEEecCCCh
Confidence 1123444444431 234569999999998 34556778877752 345555554 333
Q ss_pred -CCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 991 -DLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 991 -d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
..+++++++ |. ..+.|++++.+++..|++.+++..
T Consensus 149 ~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 149 YFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred HhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHH
Confidence 458899987 53 458999999999999999988753
No 223
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=4.8e-10 Score=136.32 Aligned_cols=194 Identities=17% Similarity=0.229 Sum_probs=129.3
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..++.+.+.+.. ...+.++||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~--------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRM--------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 467888988887776664421 1233569999999999999999999999753210
Q ss_pred ---------------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHH
Q 001491 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1068)
Q Consensus 621 ---------------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1068)
...+..++... ....+.++.....+..........|+||||+|.+.. .
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s--~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~ 142 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAAS--NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------A 142 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------H
Confidence 01122222211 112344444333322212223446999999999841 2
Q ss_pred HHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHH
Q 001491 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (1068)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~ 765 (1068)
-.+.|+..+++... .+++|.+++..+.+.+.+.+ |.. .++|.+++.++....+...+...++.++++.
T Consensus 143 a~naLLK~LEePp~---------~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~ea 210 (620)
T PRK14954 143 AFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADA 210 (620)
T ss_pred HHHHHHHHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 24556677776543 25666666777888888888 554 7899999999999999988888888899999
Q ss_pred HHHHhhccCCCCchhHHHHHHHHH
Q 001491 766 LLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 766 l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
+..++..+.| +.+++...++..+
T Consensus 211 l~~La~~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 211 LQLIARKAQG-SMRDAQSILDQVI 233 (620)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHH
Confidence 9999999877 4555555555544
No 224
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=9.2e-11 Score=141.39 Aligned_cols=154 Identities=20% Similarity=0.283 Sum_probs=113.9
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
+..|+++.|++.+.+.+...+... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 357999999999999998887631 223457999999999999999999998552
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
++.++... ...-..+|++...+.. ++..|++|||+|.+ +....|.||+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHHHHHHHH
Confidence 22222211 1223567777776643 34569999999998 56789999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
|+. ....+++|++|+.++.+.+.++. |. ..+.|..++.++..+.++..+++
T Consensus 143 LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~ 193 (527)
T PRK14969 143 LEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQ 193 (527)
T ss_pred HhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHH
Confidence 984 44566666777778888777776 55 56899999999888877777754
No 225
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.1e-10 Score=142.42 Aligned_cols=155 Identities=19% Similarity=0.288 Sum_probs=116.9
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
+..|++++|++++++.|...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 368999999999999999887631 233457999999999999999999987532
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
++++++.+ ...-..++++...+.. ....|++|||+|.+ +....|.|++.
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~naLLk~ 142 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFNALLKT 142 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHHHHHHH
Confidence 33333322 1123467777766643 23469999999998 56789999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+ +....+++|++|+.++.|.+.++. |. ..+.|..++.++....++.++++.
T Consensus 143 LE--epp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~e 194 (576)
T PRK14965 143 LE--EPPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQE 194 (576)
T ss_pred HH--cCCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHh
Confidence 98 455677777888888999999887 55 357899999988888887777654
No 226
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.20 E-value=4.4e-11 Score=140.90 Aligned_cols=137 Identities=21% Similarity=0.367 Sum_probs=95.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecchhhhhhccccHH-HHHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~-----g~~~i~v~~~el~~~~~g~se~-~l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
.+++|+||+|+|||+|++++++.+ +..++.+++.++...+.+.... .+..+....+ .+++|+|||++.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 468999999999999999999887 6788999988877655433211 1222222222 3569999999998543
Q ss_pred CCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC---CChhhcCCCCcce--EEEcCCCCHHHHHHHHHHHHHh
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLDR--LLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~---ld~al~r~gRfd~--~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
. .....|+..++.....+..+|++++..|+. +++.+.+ ||.. .+.+++|+.++|..|++..++.
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 233455555554444445566655555554 5677777 8864 7899999999999999999877
Q ss_pred h
Q 001491 1028 V 1028 (1068)
Q Consensus 1028 ~ 1028 (1068)
.
T Consensus 284 ~ 284 (405)
T TIGR00362 284 E 284 (405)
T ss_pred c
Confidence 4
No 227
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=1.1e-10 Score=138.27 Aligned_cols=154 Identities=19% Similarity=0.274 Sum_probs=112.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..|+++.|++.+.+.+...+... +.+..+||+||+|+|||++|+++|+.+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 368999999999999988887631 23356899999999999999999998743
Q ss_pred ----------cEEEEecchhhhhhccccHHHHHHHHHHH----hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHH
Q 001491 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1068)
Q Consensus 905 ----------~~i~v~~~el~~~~~g~se~~l~~lf~~a----~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~ 970 (1068)
+++.+++... . .-..++++.+.+ ......|++|||+|.+ .....+.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t~~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------TKEAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------CHHHHHHHHH
Confidence 2333333211 1 113344433322 2245679999999998 4567899999
Q ss_pred hccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 971 ~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
.|+. ..+.+++|++|+.+..|.+++++ |+ ..+.|..++.++..+.++..+++
T Consensus 144 ~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 144 TLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred Hhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 9985 34566777777888889999988 65 46899999999988888877765
No 228
>PHA02244 ATPase-like protein
Probab=99.19 E-value=8.2e-10 Score=124.44 Aligned_cols=162 Identities=21% Similarity=0.179 Sum_probs=99.7
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhh---hccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK---YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~---~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~ 954 (1068)
+.++||+||||||||++|+++|+.++.+|+.++...-... +++........-|.+|.. ...+|+|||++.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a----- 192 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS----- 192 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcC-----
Confidence 4579999999999999999999999999999874210001 111111111122333332 3459999999988
Q ss_pred CCCCCcchHHHHHHHHhccC---------ccccCcEEEEEeCCCC-----------CCCChhhcCCCCcceEEEcCCCCH
Q 001491 955 HDNTGVTDRVVNQFLTELDG---------VEVLTGVFVFAATSRP-----------DLLDAALLRPGRLDRLLFCDFPSP 1014 (1068)
Q Consensus 955 ~~~~~~~~~~~~~lL~~Ld~---------~~~~~~v~viatTn~~-----------d~ld~al~r~gRfd~~i~~~~p~~ 1014 (1068)
...+...|...++. .....++.+|+|+|.+ ..+++|++. ||- .|+|++|+.
T Consensus 193 ------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 193 ------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred ------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 34555555555541 1234578999999973 458999999 995 699999984
Q ss_pred HHHHHHHHHHHHhhccCCCCCchhhHHHHHHH-HHhhhhhccccccccccccc
Q 001491 1015 RERLDILKVISRKVCDTSIPFSSLFCNELLIC-KLWHFFMCVSLNLSSYIIFC 1066 (1068)
Q Consensus 1015 ~~r~~Il~~~l~~~~~~~id~~~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~ 1066 (1068)
.|. .|... .+ .++.--...+ .+......+.+++|.++.|+
T Consensus 264 ~E~-~i~~~-~~----------~lv~~a~~lR~~~~~~~l~~~~StR~li~~a 304 (383)
T PHA02244 264 IEH-LISNG-DE----------DLVNFVALLRHEMAEKGLDHVFSMRAIIHGK 304 (383)
T ss_pred HHH-HHhhh-HH----------HHHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 333 44331 11 1222222221 23444555566777666654
No 229
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=2.1e-10 Score=140.22 Aligned_cols=154 Identities=20% Similarity=0.262 Sum_probs=116.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
...|+++.|++.+.+.|...+... +...++||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 367999999999999998887642 223579999999999999999999998652
Q ss_pred ------------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHH
Q 001491 906 ------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1068)
Q Consensus 906 ------------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL 969 (1068)
+++++. ..+..-..+|++...+.. +...|++|||+|.+ .....+.||
T Consensus 80 ~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~naLL 142 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFNALL 142 (620)
T ss_pred HHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHHHHH
Confidence 222221 112334678888877643 34569999999998 567889999
Q ss_pred HhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 970 TELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 970 ~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
+.|+ +....+++|++|+.++.+-+.++. |+ ..+.|..++.++....++.++++
T Consensus 143 K~LE--ePp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 143 KTLE--EPPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred HHHh--cCCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHH
Confidence 9998 445567777777888888889887 65 45789999988877777766655
No 230
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=1.2e-10 Score=140.89 Aligned_cols=155 Identities=21% Similarity=0.277 Sum_probs=115.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
+..|+++.|++.+.+.|...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 368999999999999998887631 223469999999999999999999987542
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
++.+++.. ...-+.++++.+.+. .+...|++|||+|.+ .....+.||..
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~naLLK~ 142 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFNALLKT 142 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHHHHHHh
Confidence 22222211 012245666654443 345679999999998 56788999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+ +....+++|++|+.++.+.++++. |+. .+.|.+++.++..+.++..+++.
T Consensus 143 LE--epp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 143 IE--EPPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred hc--cCCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHc
Confidence 98 345677777788888889999987 664 58999999999988888877653
No 231
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.18 E-value=3.7e-10 Score=130.83 Aligned_cols=198 Identities=21% Similarity=0.252 Sum_probs=125.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccc-cchhh-HHHHHHHHHHHH----HhcCCeEEEEcc
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-EKGPI-IRQALSNFISEA----LDHAPSIVIFDN 663 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~-~~~~~-~~~~l~~~f~~a----~~~~PsILfIDE 663 (1068)
.+++||+||||||||++|+++|+.++ .++..+++..+.. .+.+. ....+...+..+ ....+++|||||
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~------~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDE 189 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDE 189 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC------CCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecc
Confidence 46799999999999999999999886 5667778777652 23332 344444444322 234678999999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc----ccCcccCCCcEEEEEecCCC--------------------
Q 001491 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSL-------------------- 719 (1068)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~V~vIattn~~-------------------- 719 (1068)
+|.+.+.+..+... ....-..+.+.|+..+++... .........+.++|.|+|-.
T Consensus 190 Idkl~~~~~~~s~~-~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~ 268 (413)
T TIGR00382 190 IDKISRKSENPSIT-RDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGK 268 (413)
T ss_pred cchhchhhcccccc-ccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhh
Confidence 99997532221110 000011345556666654321 11111222356667776641
Q ss_pred -------C-----------------------CCChhhhcCCcccccccCCCCCHHHHHHHHHHH----Hh---------h
Q 001491 720 -------E-----------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHE----IQ---------R 756 (1068)
Q Consensus 720 -------~-----------------------~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~----l~---------~ 756 (1068)
+ .+.|+|. +|++..+.|.+.+.+++.+|+... ++ +
T Consensus 269 ~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~g 346 (413)
T TIGR00382 269 SSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDN 346 (413)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 0113333 489988999999999999998642 22 2
Q ss_pred ccccCCHHHHHHHhhc--cCCCCchhHHHHHHHHHHHHHhhh
Q 001491 757 RSLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (1068)
Q Consensus 757 ~~l~~~~~~l~~la~~--t~g~s~~DL~~Lv~~a~~~a~~r~ 796 (1068)
..+.+++++++.+++. ...|-+|.|+.++++.+...+...
T Consensus 347 i~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 347 VELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred eEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 2355889999999986 356778899999998888776654
No 232
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.3e-10 Score=126.91 Aligned_cols=219 Identities=19% Similarity=0.240 Sum_probs=143.3
Q ss_pred cccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccccc
Q 001491 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1068)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1068)
+.+.+.+++++...+...+. ...|.++++||+||||||.+++.+++++...... ..++++||......
T Consensus 19 l~~Re~ei~~l~~~l~~~~~-----------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~-~~~~yINc~~~~t~ 86 (366)
T COG1474 19 LPHREEEINQLASFLAPALR-----------GERPSNIIIYGPTGTGKTATVKFVMEELEESSAN-VEVVYINCLELRTP 86 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc-----------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc-CceEEEeeeeCCCH
Confidence 56688899998887766554 3445669999999999999999999998744221 22889999776542
Q ss_pred ch----------------hhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc
Q 001491 636 KG----------------PIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1068)
Q Consensus 636 ~~----------------~~~~~~l~~~f~~a~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1068)
+. ....+.+..+++.... ....|+++||+|.|..... .++..|....+..
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc-
Confidence 21 1112223333333333 3456899999999973111 2333343433332
Q ss_pred cccCcccCCCcEEEEEecCCC---CCCChhhhcCCccc-ccccCCCCCHHHHHHHHHHHHhh--ccccCCHHHHHHHhhc
Q 001491 699 EKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDEILLDVASK 772 (1068)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~---~~L~~aL~~~gRF~-~~i~l~~P~~~er~~IL~~~l~~--~~l~~~~~~l~~la~~ 772 (1068)
...+.+|+.+|.. +.+++.+.+ +|. .++.||+++.+|...|++..... ..-.+++.++..+|..
T Consensus 154 --------~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~ 223 (366)
T COG1474 154 --------KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAAL 223 (366)
T ss_pred --------ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 1248899999985 457888888 443 35899999999999999987764 2334677777666644
Q ss_pred cCCC--CchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhh
Q 001491 773 CDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1068)
Q Consensus 773 t~g~--s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al 820 (1068)
.... +++-.-.++++|...|-.+ ....++.++..+|.
T Consensus 224 ~a~~~GDAR~aidilr~A~eiAe~~-----------~~~~v~~~~v~~a~ 262 (366)
T COG1474 224 VAAESGDARKAIDILRRAGEIAERE-----------GSRKVSEDHVREAQ 262 (366)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHhh-----------CCCCcCHHHHHHHH
Confidence 3222 4455556777777776544 23557777777663
No 233
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.18 E-value=4.5e-10 Score=137.83 Aligned_cols=238 Identities=18% Similarity=0.200 Sum_probs=138.9
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc----eeeeEEE
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVF 626 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~ 626 (1068)
.++.+++|.+..+..+.+.+. .+.+.+++|+||||||||++|+++++....... ....++.
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia---------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVA---------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHh---------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 356788899888887765431 122467999999999999999999887642211 1356888
Q ss_pred Eecccccccc-------hhhHH----HHHHHHHHH----------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHH
Q 001491 627 VCCSRLSLEK-------GPIIR----QALSNFISE----------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1068)
Q Consensus 627 i~~s~l~~~~-------~~~~~----~~l~~~f~~----------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1068)
++|..+.... .+... +.....+.. ......++|||||++.|- ...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHH
Confidence 8887653111 00000 000011110 011235699999998873 222233
Q ss_pred HHHHHHHHHHh-----hccccC----------cccCCCcEEEEE-ecCCCCCCChhhhcCCcccccccCCCCCHHHHHHH
Q 001491 686 LTKFLVDIMDE-----YGEKRK----------SSCGIGPIAFVA-SAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (1068)
Q Consensus 686 l~~~L~~~ld~-----~~~~~~----------~~~~~~~V~vIa-ttn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~I 749 (1068)
+...+.+..-. +...+. .......+++|+ |++.++.++++|++ ||. .+.+++++.+++..|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 33333321000 000000 000112355555 45567889999998 887 678999999999999
Q ss_pred HHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 750 LEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 750 L~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
++..+...+..++++++..++..+. .++..-+.+..++..+..+.... ........++.+|+.+++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~---~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA---GKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh---ccCCCCeeECHHHHHHHhCC
Confidence 9999887777789999988888765 34444445544443332221100 01112246788888887754
No 234
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.1e-10 Score=139.11 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=112.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
+..|+++.|++.+.+.+...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 367899999999999998887531 223457899999999999999999987531
Q ss_pred ----------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 906 ----------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++++++. ...-..+|.+.+.+.. +.+.|++|||+|.+ +....+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naLLk~ 142 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNALLKT 142 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHHHHH
Confidence 12221111 0112345666655543 34579999999988 45678999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ....+++|.+|+.++.+.+++++ |+. .+.|.+|+.++....++..+++.
T Consensus 143 LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 143 LEE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred Hhc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHc
Confidence 974 33455555666778888888887 654 68999999999999998887764
No 235
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=5.9e-10 Score=136.64 Aligned_cols=194 Identities=17% Similarity=0.206 Sum_probs=128.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~--------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAE--------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHh--------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 467889998888777664421 1223558999999999999999999998632110
Q ss_pred --------eeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001491 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1068)
Q Consensus 621 --------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1068)
...++.++... ....+.++..+..+..........|+||||+|.+.. ...+.|+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~--~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLLk 142 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS--HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALLK 142 (585)
T ss_pred HHHHhcCCCCeEEEEeccc--cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHHH
Confidence 01123333321 112233333322211111123346999999998841 23445566
Q ss_pred HHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhc
Q 001491 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1068)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1068)
.++.... .+++|.+++..+.+.+.+++ |+. .+.|+.++..+...++...+...++.++++.+..++..
T Consensus 143 ~LEepp~---------~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~ 210 (585)
T PRK14950 143 TLEEPPP---------HAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARA 210 (585)
T ss_pred HHhcCCC---------CeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665432 35666667777778888888 655 68899999999999999999888889999999999998
Q ss_pred cCCCCchhHHHHHHHHH
Q 001491 773 CDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 773 t~g~s~~DL~~Lv~~a~ 789 (1068)
+.| +.+++.+.+++..
T Consensus 211 s~G-dlr~al~~LekL~ 226 (585)
T PRK14950 211 ATG-SMRDAENLLQQLA 226 (585)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 877 6777777766543
No 236
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.18 E-value=1.2e-10 Score=125.94 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=101.3
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~ 954 (1068)
..+++|+||+|||||++|+++++.+ +.+++.+++.++.... .+++.... ...+|+|||+|.+...
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~-- 105 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ-- 105 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCC--
Confidence 4689999999999999999999876 5778888887765422 23333322 2359999999998321
Q ss_pred CCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCC---ChhhcCCCCc--ceEEEcCCCCHHHHHHHHHHHHHhhc
Q 001491 955 HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL---DAALLRPGRL--DRLLFCDFPSPRERLDILKVISRKVC 1029 (1068)
Q Consensus 955 ~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~l---d~al~r~gRf--d~~i~~~~p~~~~r~~Il~~~l~~~~ 1029 (1068)
......+...++.....+..+|+.++..+..+ ++.+.+ |+ ...+.+++|+.+++..+++..+.+.
T Consensus 106 -------~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~- 175 (226)
T TIGR03420 106 -------PEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARR- 175 (226)
T ss_pred -------hHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHc-
Confidence 11133444444433333344454444344333 267776 55 4789999999999999998876653
Q ss_pred cCCCCCchhhHHHHHHHHHhhhhhcccccccccc
Q 001491 1030 DTSIPFSSLFCNELLICKLWHFFMCVSLNLSSYI 1063 (1068)
Q Consensus 1030 ~~~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 1063 (1068)
++...+.+...|.....++-.++..++
T Consensus 176 -------~~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 176 -------GLQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred -------CCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 233455555666666666655555544
No 237
>PRK06893 DNA replication initiation factor; Validated
Probab=99.17 E-value=6.8e-11 Score=128.19 Aligned_cols=148 Identities=9% Similarity=0.099 Sum_probs=92.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~ 955 (1068)
..++|+||||||||+|++++|+++ +.....++..+.. ....+++... .+.++|+|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCCh--
Confidence 358999999999999999999886 4455555543211 1112333333 245699999999985321
Q ss_pred CCCCcchHHHHHHHHhccCccccCcE-EEEEeCCCCCCC---ChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhhccC
Q 001491 956 DNTGVTDRVVNQFLTELDGVEVLTGV-FVFAATSRPDLL---DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKVCDT 1031 (1068)
Q Consensus 956 ~~~~~~~~~~~~lL~~Ld~~~~~~~v-~viatTn~~d~l---d~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~~~~ 1031 (1068)
.....|...++.....+.. ++++++..|..+ ++.+.++.++...+.+++|+.++|.+|++..+...
T Consensus 108 -------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~--- 177 (229)
T PRK06893 108 -------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR--- 177 (229)
T ss_pred -------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc---
Confidence 1122344444444444444 444445556654 48888855556789999999999999999888654
Q ss_pred CCCCchhhHHHHHHHHHhhhhh
Q 001491 1032 SIPFSSLFCNELLICKLWHFFM 1053 (1068)
Q Consensus 1032 ~id~~~l~~~~~~~~~l~~~~~ 1053 (1068)
++...+.+..+|.+++.
T Consensus 178 -----~l~l~~~v~~~L~~~~~ 194 (229)
T PRK06893 178 -----GIELSDEVANFLLKRLD 194 (229)
T ss_pred -----CCCCCHHHHHHHHHhcc
Confidence 23334444444444444
No 238
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=2.1e-10 Score=133.47 Aligned_cols=155 Identities=21% Similarity=0.283 Sum_probs=113.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc------------EE
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------FI 907 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~------------~i 907 (1068)
+..|+++.|++.+.+.+...+... +.+.++|||||+|+|||++|+++|+.+... ++
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 367999999999999988887632 234689999999999999999999987542 11
Q ss_pred EEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEE
Q 001491 908 SVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFV 983 (1068)
Q Consensus 908 ~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~v 983 (1068)
.++.. .......++++++.+.. +.+.|++|||+|.+ .....+.|+..|+. .....++
T Consensus 81 ~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-----------~~~~~~~ll~~le~--~~~~~~~ 141 (367)
T PRK14970 81 ELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-----------SSAAFNAFLKTLEE--PPAHAIF 141 (367)
T ss_pred Eeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc-----------CHHHHHHHHHHHhC--CCCceEE
Confidence 12111 11233577788876643 34579999999987 34567889888864 3344556
Q ss_pred EEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 984 iatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|++|+.+..+.+++.+ |+ .++.|.+|+.++...++...+++.
T Consensus 142 Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~ 183 (367)
T PRK14970 142 ILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKE 183 (367)
T ss_pred EEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHc
Confidence 6667777888889887 55 468999999999988888877654
No 239
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.17 E-value=4.4e-10 Score=128.69 Aligned_cols=217 Identities=19% Similarity=0.273 Sum_probs=151.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~ 669 (1068)
...++||||.|+|||+|++|++.+..... ....+++++.+.+.......++..-.+-|.+.+ .-.+|+|||++.+.+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~-~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANG-PNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhC-CCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 35699999999999999999999885433 335688888877766665555554445555555 456999999999963
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCC---ChhhhcCCccc--ccccCCCCCHH
Q 001491 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRFD--FHVQLPAPAAS 744 (1068)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L---~~aL~~~gRF~--~~i~l~~P~~~ 744 (1068)
+. .....+.+.|..+.+.- .-+++.+...|..+ .+.|++ ||. ..+.+.+|+.+
T Consensus 190 k~---------~~qeefFh~FN~l~~~~-----------kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e 247 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLENG-----------KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDE 247 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhcC-----------CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHH
Confidence 11 12346666666555431 23555555556654 588999 665 46799999999
Q ss_pred HHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcccc
Q 001491 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1068)
Q Consensus 745 er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~ 824 (1068)
.|..||+..+...++.++++++..++..... +.++|+..+++....+... ...+|.+...++++...
T Consensus 248 ~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~------------~~~iTi~~v~e~L~~~~ 314 (408)
T COG0593 248 TRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFT------------KRAITIDLVKEILKDLL 314 (408)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhc------------CccCcHHHHHHHHHHhh
Confidence 9999999999999999999999999998765 6788888887776655432 12466666666665543
Q ss_pred cceeecccccccCCCCCCCCCCCchhHHHHHHHHHHh
Q 001491 825 PVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIE 861 (1068)
Q Consensus 825 P~slr~v~~~~~~~~~~~~~~i~gl~~~k~~l~e~i~ 861 (1068)
... . . ...+.+.+.+.++..
T Consensus 315 ~~~--------------~--~-itie~I~~~Va~~y~ 334 (408)
T COG0593 315 RAG--------------E--K-ITIEDIQKIVAEYYN 334 (408)
T ss_pred ccc--------------c--c-CCHHHHHHHHHHHhC
Confidence 221 1 2 445666666666655
No 240
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.9e-10 Score=137.21 Aligned_cols=178 Identities=24% Similarity=0.350 Sum_probs=137.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEe
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v~ 910 (1068)
..++.++|-++-.+.+.+.+.. +...+-+|+|+||+|||.++.-+|... +..++.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 5688888877777776666553 334578999999999999999999775 67788899
Q ss_pred cchhh--hhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCC
Q 001491 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1068)
Q Consensus 911 ~~el~--~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn 988 (1068)
.+.+. .+|-|++|.+++.+.+.+....+.||||||+|.+.+..+... + .-.+.|-|...| ..+.+-+|++|.
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaL----ARGeL~~IGATT 307 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPAL----ARGELRCIGATT 307 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHH----hcCCeEEEEecc
Confidence 88887 469999999999999999988899999999999987654322 2 334556666555 445556666665
Q ss_pred CCC-----CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh-ccCCCCCchhhH
Q 001491 989 RPD-----LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIPFSSLFC 1040 (1068)
Q Consensus 989 ~~d-----~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~-~~~~id~~~l~~ 1040 (1068)
.-+ .-|+||-| ||.. |.++.|+.++-..|++.+-.++ ..+.+-+.+-..
T Consensus 308 ~~EYRk~iEKD~AL~R--RFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al 362 (786)
T COG0542 308 LDEYRKYIEKDAALER--RFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEAL 362 (786)
T ss_pred HHHHHHHhhhchHHHh--cCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHH
Confidence 322 25999999 9976 7999999999999999999888 555666654433
No 241
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.16 E-value=3e-10 Score=123.08 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=98.9
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~ 954 (1068)
..+++|+||+|||||++|+++++.. +..++.+++.++... +. ......+|+|||+|.+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~---- 103 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLD---- 103 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcC----
Confidence 4589999999999999999999875 678888887665321 11 12235699999999872
Q ss_pred CCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCC---CCChhhcCCCCc--ceEEEcCCCCHHHHHHHHHHHHHhhc
Q 001491 955 HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD---LLDAALLRPGRL--DRLLFCDFPSPRERLDILKVISRKVC 1029 (1068)
Q Consensus 955 ~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d---~ld~al~r~gRf--d~~i~~~~p~~~~r~~Il~~~l~~~~ 1029 (1068)
......|+..++.....+..++++|++.+. .+.+.+.. || ...+.+++|+.+++..+++.+..+.
T Consensus 104 -------~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~- 173 (227)
T PRK08903 104 -------DAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAER- 173 (227)
T ss_pred -------chHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHc-
Confidence 233455555555444444544444554332 24566765 66 4689999999988888888776553
Q ss_pred cCCCCCchhhHHHHHHHHHhhhhhcccccccccc
Q 001491 1030 DTSIPFSSLFCNELLICKLWHFFMCVSLNLSSYI 1063 (1068)
Q Consensus 1030 ~~~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 1063 (1068)
++...+.+..+|.+...++-..+.+++
T Consensus 174 -------~v~l~~~al~~L~~~~~gn~~~l~~~l 200 (227)
T PRK08903 174 -------GLQLADEVPDYLLTHFRRDMPSLMALL 200 (227)
T ss_pred -------CCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 233455566666665555555544443
No 242
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.16 E-value=4.4e-10 Score=111.33 Aligned_cols=120 Identities=38% Similarity=0.517 Sum_probs=85.7
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccHHH---HHHHHHHHhcCCCeEEEEecCCccCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQA---VRDIFSKATAAAPCLLFFDEFDSIAP 951 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se~~---l~~lf~~a~~~~p~VLfiDEid~l~~ 951 (1068)
..+++++||||||||++++.+++.. +..++.++..+............ ....+..+....+.+|+|||++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~-- 96 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL-- 96 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh--
Confidence 4589999999999999999999998 88999998877655432221111 122233445567889999999987
Q ss_pred CCCCCCCCcchHHHHHHHHhccCccc----cCcEEEEEeCCCCC--CCChhhcCCCCcceEEEcC
Q 001491 952 KRGHDNTGVTDRVVNQFLTELDGVEV----LTGVFVFAATSRPD--LLDAALLRPGRLDRLLFCD 1010 (1068)
Q Consensus 952 ~r~~~~~~~~~~~~~~lL~~Ld~~~~----~~~v~viatTn~~d--~ld~al~r~gRfd~~i~~~ 1010 (1068)
.......++..+..... ..++.+|++|+... .+++.+.. ||+..+.++
T Consensus 97 ---------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 97 ---------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ---------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 23444556655554433 36788899999887 67788877 998777765
No 243
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.2e-09 Score=133.69 Aligned_cols=194 Identities=19% Similarity=0.189 Sum_probs=133.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCC-------------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK------------- 618 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~------------- 618 (1068)
+|.+++|.+...+.+.+.+.. ...+..+|||||+|+|||++|+.+|+.+....
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~--------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIAT--------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 467888998888887776532 12235599999999999999999999986321
Q ss_pred ------ceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001491 619 ------DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1068)
Q Consensus 619 ------~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1068)
.....+..+++.+ ......++..+..+-.........|++|||+|.+.. ...+.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~--~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS--NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHH
Confidence 0112334444332 112333333332221111122345999999999841 33556777
Q ss_pred HHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhc
Q 001491 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1068)
Q Consensus 693 ~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~ 772 (1068)
.++.... ..++|.+++....+.+.+++ |.. .++|.+++.++....++..+...++.++++.+..++..
T Consensus 144 ~LEepp~---------~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~ 211 (614)
T PRK14971 144 TLEEPPS---------YAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQK 211 (614)
T ss_pred HHhCCCC---------CeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7776543 25677777777889999999 655 68999999999999999999988999999999999998
Q ss_pred cCCCCchhHHHHHHHHH
Q 001491 773 CDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 773 t~g~s~~DL~~Lv~~a~ 789 (1068)
+.| +.+++..+++..+
T Consensus 212 s~g-dlr~al~~Lekl~ 227 (614)
T PRK14971 212 ADG-GMRDALSIFDQVV 227 (614)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 866 5666666666544
No 244
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.14 E-value=1.4e-10 Score=129.41 Aligned_cols=136 Identities=17% Similarity=0.217 Sum_probs=99.7
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhh--hccccHH----------HHHHHHHHHhcCCCeEEEEec
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQ----------AVRDIFSKATAAAPCLLFFDE 945 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~--~~g~se~----------~l~~lf~~a~~~~p~VLfiDE 945 (1068)
++++||.||||||||++++.+|+.+|.+++.+++...+.. ++|...- .....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4689999999999999999999999999999987766554 4454211 11223444433 457899999
Q ss_pred CCccCCCCCCCCCCcchHHHHHHHHhccC------------ccccCcEEEEEeCCCCC------------CCChhhcCCC
Q 001491 946 FDSIAPKRGHDNTGVTDRVVNQFLTELDG------------VEVLTGVFVFAATSRPD------------LLDAALLRPG 1001 (1068)
Q Consensus 946 id~l~~~r~~~~~~~~~~~~~~lL~~Ld~------------~~~~~~v~viatTn~~d------------~ld~al~r~g 1001 (1068)
++.+ ...+.+.|...|+. +.....+.||||+|..+ .++.|++.
T Consensus 143 in~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9997 34455554444441 11234688999999865 26899998
Q ss_pred CcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 1002 RLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 1002 Rfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
||-.++.+++|+.++-.+|++.....
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888999999999999999876543
No 245
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.13 E-value=8.5e-11 Score=121.17 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=79.8
Q ss_pred cccceEEEECCCCCChhHHHHHHHHHcCC----cEEEEecchhhhhhccccHHHHHHHHHHH----hcCCCeEEEEecCC
Q 001491 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL----RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFD 947 (1068)
Q Consensus 876 ~~~~~lLL~GppGtGKT~lA~alA~~~g~----~~i~v~~~el~~~~~g~se~~l~~lf~~a----~~~~p~VLfiDEid 947 (1068)
||...+||+||+|||||.+|+++|+.++. +++.++++++... ++.+..+..++..+ ......||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 35678999999999999999999999996 9999999887651 11122222222211 11111299999999
Q ss_pred ccCCCCCCCCCCcchHHHHHHHHhccCcc---------ccCcEEEEEeCCCCCC
Q 001491 948 SIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL 992 (1068)
Q Consensus 948 ~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~---------~~~~v~viatTn~~d~ 992 (1068)
++.++.+...+.....+.+.||+.|++.. ..+++++|+|+|-...
T Consensus 79 Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 79 KAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred hccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 99876444444445578999999997432 3467999999996544
No 246
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=3.3e-10 Score=137.63 Aligned_cols=161 Identities=20% Similarity=0.190 Sum_probs=117.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEe-c-------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK-G------- 911 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~-~------- 911 (1068)
+..|+++.|++.+++.|...+..- +.+..+||+||+|+|||++|+++|+.+.+.....+ +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 468999999999999999887632 33457999999999999999999998865321111 0
Q ss_pred -------------chhhhhh--ccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhc
Q 001491 912 -------------PELLNKY--IGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1068)
Q Consensus 912 -------------~el~~~~--~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~L 972 (1068)
++++.-. ....-..+|++.+.++. ....|++|||+|.+ .....|.||+.|
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a~naLLKtL 156 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAAFNALLKTL 156 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHHHHHHHHHH
Confidence 0111000 00123567888777643 33579999999998 457789999999
Q ss_pred cCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 973 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 973 d~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+ +....+++|++|+.++.+.+.++. |+ ..+.|..++.++....++..+++.
T Consensus 157 E--ePp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~ke 207 (598)
T PRK09111 157 E--EPPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKE 207 (598)
T ss_pred H--hCCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 7 444567777777878888888887 65 468999999999998888887654
No 247
>PRK09087 hypothetical protein; Validated
Probab=99.13 E-value=4e-10 Score=121.64 Aligned_cols=172 Identities=18% Similarity=0.254 Sum_probs=112.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
..++|+||+|||||+|++++++..+ ..+++...+.... +.... ..+|+|||++.+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~~~~~~~-----------~~~~~---~~~l~iDDi~~~~-- 100 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPNEIGSDA-----------ANAAA---EGPVLIEDIDAGG-- 100 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHHHcchHH-----------HHhhh---cCeEEEECCCCCC--
Confidence 4499999999999999999998653 2245443322211 11111 1489999998762
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCC---CChhhhcCCcc--cccccCCCCCHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRF--DFHVQLPAPAASE 745 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~---L~~aL~~~gRF--~~~i~l~~P~~~e 745 (1068)
. . ...+.+.+....+. +..++++++..+.. ..+.|++ || ...+++.+|+.++
T Consensus 101 -~------~---~~~lf~l~n~~~~~-----------g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 101 -F------D---ETGLFHLINSVRQA-----------GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDAL 157 (226)
T ss_pred -C------C---HHHHHHHHHHHHhC-----------CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHH
Confidence 0 1 12344444333322 12456666555543 3577888 66 3578999999999
Q ss_pred HHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 746 r~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
|.+|+++.+..+++.++++++..++++..+ +.+.+..++++....+... ...++...+.++++.
T Consensus 158 ~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~------------~~~it~~~~~~~l~~ 221 (226)
T PRK09087 158 LSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER------------KSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHh
Confidence 999999999999999999999999999875 4555655555554443322 133566666655544
No 248
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.12 E-value=2.9e-09 Score=111.12 Aligned_cols=196 Identities=20% Similarity=0.232 Sum_probs=138.0
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
..+.+|.|.+.+.+.+.++...++. ..|..++||+|..|||||+|+||+..+++.... ..+.++.+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~-----------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl---rLVEV~k~ 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE-----------GLPANNVLLWGARGTGKSSLVKALLNEYADEGL---RLVEVDKE 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc-----------CCcccceEEecCCCCChHHHHHHHHHHHHhcCC---eEEEEcHH
Confidence 4567899999999999998877665 556688999999999999999999999875443 36667665
Q ss_pred cccccchhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 631 RLSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
++.. +-.+++..+. ...-|||+||+-- .++. .-...|...+++-.... ..+
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------e~gd-------~~yK~LKs~LeG~ve~r-----P~N 174 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSF-------EEGD-------DAYKALKSALEGGVEGR-----PAN 174 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCC-------CCCc-------hHHHHHHHHhcCCcccC-----CCe
Confidence 5442 2233333333 3456999999722 1111 23455666676644332 237
Q ss_pred EEEEEecCCCCCCChhhh--------------------cCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHH--
Q 001491 710 IAFVASAQSLEKIPQSLT--------------------SSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL-- 767 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~--------------------~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~-- 767 (1068)
|++.||+|+.+.++..+. -+-||+..+.|++++.++..+|+.++++..++.++++.++
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~e 254 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAE 254 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999766652221 1239999999999999999999999999999998876654
Q ss_pred --HHhhccCCCCchhHHHHHHHH
Q 001491 768 --DVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 768 --~la~~t~g~s~~DL~~Lv~~a 788 (1068)
..|....|-||+-..++++..
T Consensus 255 Al~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 255 ALQWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHHHhcCCCccHhHHHHHHHH
Confidence 344455677777666665543
No 249
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.12 E-value=1e-10 Score=138.33 Aligned_cols=138 Identities=17% Similarity=0.312 Sum_probs=94.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecchhhhhhccccH-HHHHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASE-QAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~-----g~~~i~v~~~el~~~~~g~se-~~l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
.+++||||+|||||+|++++|+.+ +..++.+++.++...+..... ..+.+ |.......+++|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 369999999999999999999886 567888998888776543321 12222 33222235779999999988532
Q ss_pred CCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC---CChhhcCCCCcc--eEEEcCCCCHHHHHHHHHHHHHh
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~---ld~al~r~gRfd--~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
......|+..++.+...+..+|+++...|.. +++.+.+ ||. .++.+.+|+.++|..|++..++.
T Consensus 210 ---------~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 ---------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred ---------HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 1233445555544444455666655556655 4566666 764 57789999999999999998875
Q ss_pred h
Q 001491 1028 V 1028 (1068)
Q Consensus 1028 ~ 1028 (1068)
.
T Consensus 279 ~ 279 (440)
T PRK14088 279 E 279 (440)
T ss_pred c
Confidence 3
No 250
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.1e-10 Score=137.37 Aligned_cols=188 Identities=21% Similarity=0.223 Sum_probs=137.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcE-------E-----
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF-------I----- 907 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~-------i----- 907 (1068)
+..|+++.|++.+.+.|...+..- +....+||.||.|||||++||.+|+.+++.- .
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 367999999999999999998753 3345799999999999999999999985441 1
Q ss_pred -EEecchhhh--hhccc---cHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccc
Q 001491 908 -SVKGPELLN--KYIGA---SEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV 977 (1068)
Q Consensus 908 -~v~~~el~~--~~~g~---se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~ 977 (1068)
.++-+.+.+ .+.++ .-.++|++.+++.- +++.|.+|||+|++ +..+.|.||+.|+ +.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE--EP 146 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE--EP 146 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc--cC
Confidence 111111110 01111 23567888888743 45679999999999 7889999999998 77
Q ss_pred cCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHhhhhhcccc
Q 001491 978 LTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKVCDTSIPFSSLFCNELLICKLWHFFMCVSL 1057 (1068)
Q Consensus 978 ~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~~~~~id~~~l~~~~~~~~~l~~~~~~~~~ 1057 (1068)
...|++|++|-.++.+++-++. |.. .+.|...+.++....+..++.+. ++..++.+...+.+...+-..
T Consensus 147 P~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E--------~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 147 PSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKE--------GINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred ccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhc--------CCccCHHHHHHHHHHcCCChh
Confidence 7889999999999999998887 443 36788899998888888888775 555556666666666655444
Q ss_pred cccccc
Q 001491 1058 NLSSYI 1063 (1068)
Q Consensus 1058 ~~~~~~ 1063 (1068)
.--|++
T Consensus 216 DalslL 221 (515)
T COG2812 216 DALSLL 221 (515)
T ss_pred hHHHHH
Confidence 443433
No 251
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=2e-10 Score=137.55 Aligned_cols=136 Identities=21% Similarity=0.360 Sum_probs=96.3
Q ss_pred eEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCC
Q 001491 880 NVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1068)
Q Consensus 880 ~lLL~GppGtGKT~lA~alA~~~-----g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~ 954 (1068)
.++|||++|||||+|+.++++.+ |..+++++..++.+.+.........+.|.+.. ..+++|+|||++.+.++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH-
Confidence 59999999999999999999876 67889999999887775543332223344322 246799999999986432
Q ss_pred CCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC----CCCChhhcCCCCcce--EEEcCCCCHHHHHHHHHHHHHhh
Q 001491 955 HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP----DLLDAALLRPGRLDR--LLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 955 ~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~----d~ld~al~r~gRfd~--~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.....|+..++.+...+..+|| |++.+ ..+++.|.+ ||.. ++.+..|+.+.|..|++..++..
T Consensus 394 --------~tqeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 394 --------STQEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred --------HHHHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 2233444444444444444444 66654 347888888 8854 66889999999999999988765
No 252
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.10 E-value=4.5e-09 Score=109.66 Aligned_cols=184 Identities=21% Similarity=0.272 Sum_probs=135.5
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecc
Q 001491 836 AEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 912 (1068)
Q Consensus 836 ~~~~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~ 912 (1068)
+......+.++.|.+..++.+.+..+.... . .+..|+||+|..||||+++++|+-.++ |..+++|+-.
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~------G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAE------G---LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHc------C---CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 334457889999999999998766553221 1 234699999999999999999999887 7889999877
Q ss_pred hhhhhhccccHHHHHHHHHHHhcCC-CeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--ccCcEEEEEeCCC
Q 001491 913 ELLNKYIGASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VLTGVFVFAATSR 989 (1068)
Q Consensus 913 el~~~~~g~se~~l~~lf~~a~~~~-p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--~~~~v~viatTn~ 989 (1068)
++. .+..+++..+..+ .=|||+|++ +++.++.....|-..|+|.- ...+|+|.||+||
T Consensus 123 dl~---------~Lp~l~~~Lr~~~~kFIlFcDDL----------SFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 DLA---------TLPDLVELLRARPEKFILFCDDL----------SFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred HHh---------hHHHHHHHHhcCCceEEEEecCC----------CCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 764 3455666655543 348888876 34557788899999998754 3457999999999
Q ss_pred CCCCChhhc-C-------------------CCCcceEEEcCCCCHHHHHHHHHHHHHhhccCCCCCch-hhHHHHHHHHH
Q 001491 990 PDLLDAALL-R-------------------PGRLDRLLFCDFPSPRERLDILKVISRKVCDTSIPFSS-LFCNELLICKL 1048 (1068)
Q Consensus 990 ~d~ld~al~-r-------------------~gRfd~~i~~~~p~~~~r~~Il~~~l~~~~~~~id~~~-l~~~~~~~~~l 1048 (1068)
-.+|+..+. + ..||.-.+-|.++++++.+.|+...+++. .+|+++ ..-.+++.|+.
T Consensus 184 RHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~---~l~~~~e~l~~eAl~WAt 260 (287)
T COG2607 184 RHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF---GLDISDEELHAEALQWAT 260 (287)
T ss_pred cccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHH
Confidence 887763332 1 13999999999999999999999999876 555543 34445555555
Q ss_pred hh
Q 001491 1049 WH 1050 (1068)
Q Consensus 1049 ~~ 1050 (1068)
.|
T Consensus 261 ~r 262 (287)
T COG2607 261 TR 262 (287)
T ss_pred hc
Confidence 44
No 253
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.09 E-value=2.1e-10 Score=135.37 Aligned_cols=138 Identities=17% Similarity=0.305 Sum_probs=94.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~ 955 (1068)
.+++||||+|+|||+|++++++.+ |.+++.++..++...+.......-...|.... ...++|+|||++.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 479999999999999999999876 78899999877766544332211122344332 346799999999985321
Q ss_pred CCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCC---CCChhhcCCCCcc--eEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD---LLDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 956 ~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d---~ld~al~r~gRfd--~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.....|...++.....+..+|++++..|. .+++.+.+ ||. ..+.+.+|+.++|..|++..++..
T Consensus 219 -------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 219 -------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred -------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 22334444443333334445554444443 46788888 885 688999999999999999988774
No 254
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=9.3e-10 Score=133.89 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=110.5
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEE-----------E
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI-----------S 908 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i-----------~ 908 (1068)
+..|+++.|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+.+.-. .
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 367999999999999988876531 23356999999999999999999999865210 0
Q ss_pred E--ec-----------chhhhhhccc---cHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHH
Q 001491 909 V--KG-----------PELLNKYIGA---SEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 968 (1068)
Q Consensus 909 v--~~-----------~el~~~~~g~---se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~l 968 (1068)
- .+ .++ ..+.|. .-..++++.+.+. .+...|++|||+|.+ .....+.|
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------t~~a~naL 147 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------STAAFNAF 147 (620)
T ss_pred CCccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------CHHHHHHH
Confidence 0 00 000 001121 1346666665552 234569999999998 45678999
Q ss_pred HHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 969 LTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 969 L~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
|..|+. ....+++|++|+.++.|-+.+++ |. ..+.|.+++.++....++.++++
T Consensus 148 LK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 148 LKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred HHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHH
Confidence 999973 33455555566667888888887 44 56899999998888777776654
No 255
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=4.9e-10 Score=131.29 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
+..|+++.|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 468999999999999888876621 233469999999999999999999988552
Q ss_pred ------------------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchH
Q 001491 906 ------------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDR 963 (1068)
Q Consensus 906 ------------------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~ 963 (1068)
++.+++.+ ...-..++++.+.+.. +...|+||||+|.+ +..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-----------~~~ 142 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML-----------SIA 142 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-----------CHH
Confidence 12222111 0113456666555522 23469999999998 446
Q ss_pred HHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 964 VVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 964 ~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
..+.|+..|+ ......++|++|+.++.+-+.+++ |.. .+.|.+++.++....++..+++
T Consensus 143 ~~~~LLk~LE--ep~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 143 AFNAFLKTLE--EPPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred HHHHHHHHHh--cCCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHH
Confidence 7788999987 333455566666777788888887 553 5899999998888888777654
No 256
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.09 E-value=1.2e-09 Score=121.00 Aligned_cols=156 Identities=17% Similarity=0.244 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc------ccc
Q 001491 561 TTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSL 634 (1068)
Q Consensus 561 ~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~------l~~ 634 (1068)
..++++.+++...+.. +.++||+||||||||++|+++|+.++ ..++.++|.. +.+
T Consensus 5 ~~~~~l~~~~l~~l~~-------------g~~vLL~G~~GtGKT~lA~~la~~lg------~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS-------------GYPVHLRGPAGTGKTTLAMHVARKRD------RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHHHHHhc-------------CCeEEEEcCCCCCHHHHHHHHHHHhC------CCEEEEeCCccCCHHHHhh
Confidence 3456666666444332 36799999999999999999999876 6677777654 222
Q ss_pred cchhhH-HHHHHH-------------------HHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 001491 635 EKGPII-RQALSN-------------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1068)
Q Consensus 635 ~~~~~~-~~~l~~-------------------~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1068)
...+.. ...+.. .+..+. ..+.+|+|||+|.+-+ .....|...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~-~~g~~lllDEi~r~~~---------------~~q~~Ll~~L 129 (262)
T TIGR02640 66 SYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAV-REGFTLVYDEFTRSKP---------------ETNNVLLSVF 129 (262)
T ss_pred hhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHH-HcCCEEEEcchhhCCH---------------HHHHHHHHHh
Confidence 211100 111111 111122 2356999999999731 3445555666
Q ss_pred Hhhc----ccc---CcccCCCcEEEEEecCCCC-----CCChhhhcCCcccccccCCCCCHHHHHHHHHHHH
Q 001491 695 DEYG----EKR---KSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1068)
Q Consensus 695 d~~~----~~~---~~~~~~~~V~vIattn~~~-----~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l 754 (1068)
++.. ... .......++.+|+|+|+.. .+++++.+ ||. .+.++.|+.++..+|++..+
T Consensus 130 e~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 130 EEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 5421 000 0001223678999999753 56888998 885 78999999999999998754
No 257
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=7.8e-10 Score=131.80 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=113.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC---------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------------- 904 (1068)
+..|+++.|++.+++.+...+... +.+..+||+||+|+|||++|+++|+.+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 368999999999999998887531 22345699999999999999999988731
Q ss_pred ---------cEEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 905 ---------~~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
.++.+++.+- ..-..++++...+.. +...|++|||+|.+ +....+.||..
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~NALLK~ 140 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAFNALLKT 140 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHHHH
Confidence 2333332110 112466776655432 23469999999998 67889999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+.. ...+.+|++|+.+..|.++++. |. ..++|.+++.++....++.++++-
T Consensus 141 LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 141 LEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred Hhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHc
Confidence 9843 4556666667778889999988 64 578999999988888888777653
No 258
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.07 E-value=6.6e-10 Score=127.20 Aligned_cols=132 Identities=30% Similarity=0.432 Sum_probs=95.7
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhh--hccccHHHHH------------HHHHHHhcCCCeEEE
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQAVR------------DIFSKATAAAPCLLF 942 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~--~~g~se~~l~------------~lf~~a~~~~p~VLf 942 (1068)
.++|+||.||||||||++|+.+|+.++.+|+.+.+...+.. .+|...-... -+|...+ +|+|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 34789999999999999999999999999999987654432 1222111111 0111111 4999
Q ss_pred EecCCccCCCCCCCCCCcchHHHHHHHHhccC----------ccccCcEEEEEeCC-----CCCCCChhhcCCCCcceEE
Q 001491 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG----------VEVLTGVFVFAATS-----RPDLLDAALLRPGRLDRLL 1007 (1068)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~----------~~~~~~v~viatTn-----~~d~ld~al~r~gRfd~~i 1007 (1068)
+|||++. ...+.+.|+..|+. .....+++|++|+| .-..+++|+++ ||...+
T Consensus 118 ~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 9999997 56889999999975 33346788999989 44558999999 998889
Q ss_pred EcCCC-CHHHHHHHHHHHH
Q 001491 1008 FCDFP-SPRERLDILKVIS 1025 (1068)
Q Consensus 1008 ~~~~p-~~~~r~~Il~~~l 1025 (1068)
++++| +.++...+.....
T Consensus 185 ~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 185 YVDYPDSEEEERIILARVG 203 (329)
T ss_pred ecCCCCchHHHHHHHHhCc
Confidence 99999 5555555555444
No 259
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.7e-10 Score=120.86 Aligned_cols=128 Identities=22% Similarity=0.379 Sum_probs=88.8
Q ss_pred CCchhHHHHHHHHHHhccCCchhhhhhCC---c-cccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhh-hhhcc
Q 001491 846 VGGLTDIQNAIKEMIELPSKFPNIFAQAP---L-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIG 920 (1068)
Q Consensus 846 i~gl~~~k~~l~e~i~~~~~~~~~~~~~~---~-~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~-~~~~g 920 (1068)
++|++..|+.|.-++. .+|.++..... . -..+++||.||+|||||.||+.+|+.++.+|.--+...+. ..|+|
T Consensus 63 VIGQe~AKKvLsVAVY--NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVY--NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeeh--hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 6778888877765444 23333322211 1 1367999999999999999999999999999888877776 35899
Q ss_pred ccHHHH-HHHHHHH----hcCCCeEEEEecCCccCCCCCCCC---CCcchHHHHHHHHhccCc
Q 001491 921 ASEQAV-RDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGV 975 (1068)
Q Consensus 921 ~se~~l-~~lf~~a----~~~~p~VLfiDEid~l~~~r~~~~---~~~~~~~~~~lL~~Ld~~ 975 (1068)
+.-+++ ..++..| ..+...|++|||||+++.+...-+ +-.+..+..+||+.|+|-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 876554 4444433 222345999999999976543211 233567889999999863
No 260
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.07 E-value=5.9e-10 Score=119.90 Aligned_cols=159 Identities=20% Similarity=0.301 Sum_probs=107.6
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecchhhhhhccccHH-HHHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~-----g~~~i~v~~~el~~~~~g~se~-~l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
..++||||+|+|||+|.+++++.. +..++.++..++...+...... .+.++....+ ..++|+||+++.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~- 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG- 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC-
Confidence 458999999999999999999774 6789999998888766544322 2223323332 446999999999842
Q ss_pred CCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC---CChhhcCCCCcce--EEEcCCCCHHHHHHHHHHHHHh
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLDR--LLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~---ld~al~r~gRfd~--~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
..+....|...++.....+..+|+++...|.. +++.|.. ||.. ++.+.+|+.++|.+|++..++.
T Consensus 112 --------~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 112 --------KQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred --------chHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 23456667767766666777777766666665 5677776 7755 7889999999999999999987
Q ss_pred hccCCCCCchhhHHHHHHHHHhhhhhccccc
Q 001491 1028 VCDTSIPFSSLFCNELLICKLWHFFMCVSLN 1058 (1068)
Q Consensus 1028 ~~~~~id~~~l~~~~~~~~~l~~~~~~~~~~ 1058 (1068)
. ++...+.+..+|.+.+.....+
T Consensus 182 ~--------~~~l~~~v~~~l~~~~~~~~r~ 204 (219)
T PF00308_consen 182 R--------GIELPEEVIEYLARRFRRDVRE 204 (219)
T ss_dssp T--------T--S-HHHHHHHHHHTTSSHHH
T ss_pred h--------CCCCcHHHHHHHHHhhcCCHHH
Confidence 6 5556777777777776554333
No 261
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.06 E-value=1.3e-09 Score=112.56 Aligned_cols=181 Identities=18% Similarity=0.246 Sum_probs=122.4
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
.+.+++|.+..++.+ ..+... ... .+++|.||||+||||-+.++|++|-.. .....+..+++++
T Consensus 25 ~l~dIVGNe~tv~rl----~via~~----------gnm-P~liisGpPG~GKTTsi~~LAr~LLG~-~~ke~vLELNASd 88 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERL----SVIAKE----------GNM-PNLIISGPPGTGKTTSILCLARELLGD-SYKEAVLELNASD 88 (333)
T ss_pred HHHHhhCCHHHHHHH----HHHHHc----------CCC-CceEeeCCCCCchhhHHHHHHHHHhCh-hhhhHhhhccCcc
Confidence 356788888776654 332221 122 359999999999999999999997422 1123455666666
Q ss_pred ccccchhhHHHHHHHHHHHHHhcC---CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCC
Q 001491 632 LSLEKGPIIRQALSNFISEALDHA---PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~---PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1068)
-.+ .+..+..++..-+.-.... -.|+++||+|++.. ...+.|.+.|+-|...
T Consensus 89 eRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~---------------gAQQAlRRtMEiyS~t-------- 143 (333)
T KOG0991|consen 89 ERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA---------------GAQQALRRTMEIYSNT-------- 143 (333)
T ss_pred ccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh---------------HHHHHHHHHHHHHccc--------
Confidence 443 3455665654433332222 24999999999851 3456677778877654
Q ss_pred cEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCC
Q 001491 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1068)
Q Consensus 709 ~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s 777 (1068)
..+..+||..+.+-+.+.+ |.. .+.+...+..+...-+....+..++.++++.++.+....+|..
T Consensus 144 -tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDM 208 (333)
T KOG0991|consen 144 -TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDM 208 (333)
T ss_pred -chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchH
Confidence 5678889998988888888 554 4556666777766666666777788899999999888777743
No 262
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=9.1e-10 Score=134.96 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=110.9
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc--------------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------- 905 (1068)
...|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 367999999999999988876531 123457999999999999999999887532
Q ss_pred -----------EEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHH
Q 001491 906 -----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1068)
Q Consensus 906 -----------~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~ 970 (1068)
++.++... ...-..++++...+.. ....|++|||+|.+ .....+.||+
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~naLLk 142 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAFNALLK 142 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHHHHHHH
Confidence 12222110 1123455666555432 33569999999998 4577899999
Q ss_pred hccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 971 ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 971 ~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.|+.. ...+++|++|+..+.+.+.+++ |+. .+.|..++..+...+++..+++.
T Consensus 143 ~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~e 195 (585)
T PRK14950 143 TLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAE 195 (585)
T ss_pred HHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHc
Confidence 99743 3456666677777778888877 554 58899999999888888776653
No 263
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.05 E-value=3e-09 Score=116.11 Aligned_cols=185 Identities=20% Similarity=0.305 Sum_probs=112.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHh-----cCCeEEEEccch
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIVIFDNLD 665 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~-----~~PsILfIDEiD 665 (1068)
..++|+||||||||+|||.|+....... ..|+.+++..- ...+ ++++|+.+.. .+..||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a---~t~d----vR~ife~aq~~~~l~krkTilFiDEiH 232 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNA---KTND----VRDIFEQAQNEKSLTKRKTILFIDEIH 232 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEecccc---chHH----HHHHHHHHHHHHhhhcceeEEEeHHhh
Confidence 3499999999999999999999765332 44555544332 2222 4444544432 456899999999
Q ss_pred hhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCC-C-CCCChhhhcCCcccccccCCCCCH
Q 001491 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-L-EKIPQSLTSSGRFDFHVQLPAPAA 743 (1068)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~-~-~~L~~aL~~~gRF~~~i~l~~P~~ 743 (1068)
.+-. .+ ...|+..++. |.|.+|++|+. | =.++.+|.+++| +|.+.....
T Consensus 233 RFNk----sQ-----------QD~fLP~VE~-----------G~I~lIGATTENPSFqln~aLlSRC~---VfvLekL~~ 283 (554)
T KOG2028|consen 233 RFNK----SQ-----------QDTFLPHVEN-----------GDITLIGATTENPSFQLNAALLSRCR---VFVLEKLPV 283 (554)
T ss_pred hhhh----hh-----------hhcccceecc-----------CceEEEecccCCCccchhHHHHhccc---eeEeccCCH
Confidence 9842 11 1223332221 35888877643 3 357899999444 677888888
Q ss_pred HHHHHHHHHHHh---h--c---c-----ccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCccccccccc
Q 001491 744 SERKAILEHEIQ---R--R---S-----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPT 810 (1068)
Q Consensus 744 ~er~~IL~~~l~---~--~---~-----l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~ 810 (1068)
+....||.+-+. . + + +.+++.+++.++..++|-..+.|..| +.+......|.. ...+..
T Consensus 284 n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~L-ems~~m~~tr~g-------~~~~~~ 355 (554)
T KOG2028|consen 284 NAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNAL-EMSLSMFCTRSG-------QSSRVL 355 (554)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHhhcC-------Ccccce
Confidence 999888887444 1 1 1 12556678999999998654444332 333222333311 112345
Q ss_pred cchhhhhhhhcc
Q 001491 811 LVRDDFSQAMHE 822 (1068)
Q Consensus 811 lt~edf~~Al~~ 822 (1068)
++.+|+..++..
T Consensus 356 lSidDvke~lq~ 367 (554)
T KOG2028|consen 356 LSIDDVKEGLQR 367 (554)
T ss_pred ecHHHHHHHHhh
Confidence 777887776654
No 264
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.05 E-value=6.5e-10 Score=120.99 Aligned_cols=149 Identities=17% Similarity=0.115 Sum_probs=91.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~ 955 (1068)
.+++|+||+|||||+|++++++.. |..+..++..+... ...++++.... ..+|+|||++.+.++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~--- 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD--- 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---
Confidence 479999999999999999999875 44556665544221 11122222221 258999999998432
Q ss_pred CCCCcchHHHHHHHHhccCccccCc-EEEEEeCCCCCC---CChhhcCCCCcc--eEEEcCCCCHHHHHHHHHHHHHhhc
Q 001491 956 DNTGVTDRVVNQFLTELDGVEVLTG-VFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKVC 1029 (1068)
Q Consensus 956 ~~~~~~~~~~~~lL~~Ld~~~~~~~-v~viatTn~~d~---ld~al~r~gRfd--~~i~~~~p~~~~r~~Il~~~l~~~~ 1029 (1068)
......|...++.....+. .+++++++.|.. +.|.|.+ |+. .++.+.+|+.++|.++++......
T Consensus 113 ------~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~- 183 (235)
T PRK08084 113 ------ELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLR- 183 (235)
T ss_pred ------HHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHc-
Confidence 1112223233332223333 455555555555 6789988 875 688999999999999998765543
Q ss_pred cCCCCCchhhHHHHHHHHHhhhhhccc
Q 001491 1030 DTSIPFSSLFCNELLICKLWHFFMCVS 1056 (1068)
Q Consensus 1030 ~~~id~~~l~~~~~~~~~l~~~~~~~~ 1056 (1068)
++...+.+..+|.++..+..
T Consensus 184 -------~~~l~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 184 -------GFELPEDVGRFLLKRLDREM 203 (235)
T ss_pred -------CCCCCHHHHHHHHHhhcCCH
Confidence 23344555555555554433
No 265
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.05 E-value=1.1e-09 Score=122.43 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=91.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc------ccccchhhHH------HHHHHHHHHHHhcCCe
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKGPIIR------QALSNFISEALDHAPS 657 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~------l~~~~~~~~~------~~l~~~f~~a~~~~Ps 657 (1068)
++++||.|+||||||++++.+|+.++ ..++.++|.. +.+...-..+ ......+..|. ..+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~------~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~ 136 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN------WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNV 136 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC------CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCe
Confidence 47899999999999999999999998 5566666543 3332111000 00011222222 3567
Q ss_pred EEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh-----hccccCcccCCCcEEEEEecCCCC------------
Q 001491 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE-----YGEKRKSSCGIGPIAFVASAQSLE------------ 720 (1068)
Q Consensus 658 ILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~-----~~~~~~~~~~~~~V~vIattn~~~------------ 720 (1068)
+|++||+|..-+ .....|..+++. +...........++.+|||+|+.+
T Consensus 137 illlDEin~a~p---------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~ 201 (327)
T TIGR01650 137 ALCFDEYDAGRP---------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQ 201 (327)
T ss_pred EEEechhhccCH---------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeee
Confidence 899999998731 233444445442 111111122334799999999854
Q ss_pred CCChhhhcCCcccccccCCCCCHHHHHHHHHHHH
Q 001491 721 KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1068)
Q Consensus 721 ~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l 754 (1068)
.++++++. ||...+.+..|+.++-.+|+....
T Consensus 202 ~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 202 QINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred cCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 35788888 998778999999999999988654
No 266
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.03 E-value=2.5e-09 Score=121.87 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=124.7
Q ss_pred cccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccccc
Q 001491 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1068)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1068)
++|....+.++.+.+..+.... .+|||+|++||||+++|+++...... ...+++.++|..+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~-------------~pVLI~GE~GtGK~~lAr~iH~~s~r---~~~pfv~vnc~~~~~~ 64 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLD-------------RPVLIIGERGTGKELIAARLHYLSKR---WQGPLVKLNCAALSEN 64 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCChHHHHHHHHHHhcCc---cCCCeEEEeCCCCChH
Confidence 3567788888988887665432 67999999999999999999875432 2368999999876532
Q ss_pred chhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--
Q 001491 636 KGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1068)
Q Consensus 636 ~~~~~~~~l~~~f~~---------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1068)
.. +. .+|.. ......+.|||||++.|- . .+...|...++...
T Consensus 65 ~l---~~---~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~-----------~----~~Q~~Ll~~l~~~~~~ 123 (329)
T TIGR02974 65 LL---DS---ELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATAS-----------L----LVQEKLLRVIEYGEFE 123 (329)
T ss_pred HH---HH---HHhccccccccCcccccCCchhhCCCCEEEeCChHhCC-----------H----HHHHHHHHHHHcCcEE
Confidence 11 11 11110 112345799999999983 2 33334444443321
Q ss_pred cccCcccCCCcEEEEEecCCC-------CCCChhhhcCCccc-ccccCCCCC--HHHHHHHHHHHHhh----cc----cc
Q 001491 699 EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQR----RS----LE 760 (1068)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~-------~~L~~aL~~~gRF~-~~i~l~~P~--~~er~~IL~~~l~~----~~----l~ 760 (1068)
..+.......++.+|++++.. ..+.+.|.. |+. ..|.+|+.. .++...++++++.. .+ ..
T Consensus 124 ~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ 201 (329)
T TIGR02974 124 RVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPG 201 (329)
T ss_pred ecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 101111112358889888752 233455555 553 345666654 24455555555442 22 35
Q ss_pred CCHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 761 ~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
++++++..+..+..-.+.++|++++++++..+
T Consensus 202 ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 202 FTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 89999999999887778899999999887654
No 267
>PRK08727 hypothetical protein; Validated
Probab=99.03 E-value=1.2e-09 Score=118.82 Aligned_cols=128 Identities=21% Similarity=0.209 Sum_probs=84.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~ 955 (1068)
..++|+||+|||||+|+.+++..+ |.....++..++.. .+.+.++... ...+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 359999999999999999997664 66667777655432 2334444443 34599999999885322
Q ss_pred CCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC---CChhhcCCCCc--ceEEEcCCCCHHHHHHHHHHHHHh
Q 001491 956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRL--DRLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 956 ~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~---ld~al~r~gRf--d~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
.-...++..++.....+.-+|+++...|+. +++++.+ || ..++.+++|+.++|.+|++..+..
T Consensus 110 -------~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 112233333433333333344434445554 4789988 76 457899999999999999987665
No 268
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.02 E-value=3.3e-09 Score=111.49 Aligned_cols=154 Identities=20% Similarity=0.209 Sum_probs=98.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------------eeeeEEEEecccccccchhhHHHHHHHHHHH
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISE 650 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~ 650 (1068)
.+..+||+||+|+|||++|+.+++.+..... ....+..+....- ....+.++..+..+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-SIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-cCCHHHHHHHHHHHccC
Confidence 3456999999999999999999999863200 0011222221110 11223333323222211
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCC
Q 001491 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1068)
Q Consensus 651 a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~g 730 (1068)
.......|++|||+|.+.. ...+.|+..++.... ...+|++++.+..+.+++++
T Consensus 92 ~~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~~~---------~~~~il~~~~~~~l~~~i~s-- 145 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNE---------------AAANALLKTLEEPPP---------NTLFILITPSPEKLLPTIRS-- 145 (188)
T ss_pred cccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChHhChHHHHh--
Confidence 1223456999999999841 223445566655332 25666667777889999998
Q ss_pred cccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCC
Q 001491 731 RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1068)
Q Consensus 731 RF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~ 776 (1068)
|+. .+++++|+.++..+++... + ++++++..++..+.|.
T Consensus 146 r~~-~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 146 RCQ-VLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred hcE-EeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 664 7999999999998888765 3 6788888888888764
No 269
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.02 E-value=6.8e-10 Score=125.82 Aligned_cols=156 Identities=20% Similarity=0.313 Sum_probs=105.5
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc-------CC--cEEEEec
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SL--RFISVKG 911 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-------g~--~~i~v~~ 911 (1068)
..|+++.|++++++.+.-....+ ..+|+||+|+||||||++|+++|..+ +. ++..+.+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 56889999999998877543221 12589999999999999999999998 33 2221111
Q ss_pred -c--------hhhhh-------hccccHHHH------------------HHHHHHHhcCCCeEEEEecCCccCCCCCCCC
Q 001491 912 -P--------ELLNK-------YIGASEQAV------------------RDIFSKATAAAPCLLFFDEFDSIAPKRGHDN 957 (1068)
Q Consensus 912 -~--------el~~~-------~~g~se~~l------------------~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~ 957 (1068)
+ ++... -.+.++..+ ...+.+| ...+||+||++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl-------- 140 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL-------- 140 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC--------
Confidence 0 01000 001111111 1111112 1249999999998
Q ss_pred CCcchHHHHHHHHhccCcc-----------ccCcEEEEEeCCCCC-CCChhhcCCCCcceEEEcCCCCH-HHHHHHHHHH
Q 001491 958 TGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFPSP-RERLDILKVI 1024 (1068)
Q Consensus 958 ~~~~~~~~~~lL~~Ld~~~-----------~~~~v~viatTn~~d-~ld~al~r~gRfd~~i~~~~p~~-~~r~~Il~~~ 1024 (1068)
.+.+++.|+..|+... ...++++++|+|..+ .++++++. ||...+.+++|.. ++|.+|++..
T Consensus 141 ---~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 141 ---EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ---CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 6788899999886432 224688888888655 48999998 9999999998876 8999999875
Q ss_pred H
Q 001491 1025 S 1025 (1068)
Q Consensus 1025 l 1025 (1068)
.
T Consensus 216 ~ 216 (334)
T PRK13407 216 D 216 (334)
T ss_pred h
Confidence 4
No 270
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.02 E-value=6e-09 Score=114.07 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=93.5
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCC------------CCCC
Q 001491 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKI 722 (1068)
Q Consensus 655 ~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~------------~~~L 722 (1068)
-|+||||||+|+|- -....+|.+.|+.-- .+++ |.+||+ |+.+
T Consensus 291 VpGVLFIDEvHmLD---------------IE~FsFlnrAlEse~---------aPIi-i~AtNRG~~kiRGTd~~sPhGI 345 (450)
T COG1224 291 VPGVLFIDEVHMLD---------------IECFSFLNRALESEL---------APII-ILATNRGMTKIRGTDIESPHGI 345 (450)
T ss_pred ecceEEEechhhhh---------------HHHHHHHHHHhhccc---------CcEE-EEEcCCceeeecccCCcCCCCC
Confidence 38899999999883 255667777666421 2444 445554 6677
Q ss_pred ChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCc
Q 001491 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 802 (1068)
Q Consensus 723 ~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~ 802 (1068)
|..|.. |.- .+...+++.++..+|++..+...++.+++++++.++.....-+-+-.-+|+.-|...|.+|
T Consensus 346 P~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------- 415 (450)
T COG1224 346 PLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------- 415 (450)
T ss_pred CHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-------
Confidence 888877 655 6788899999999999999999999999999999998877666655556666565555554
Q ss_pred cccccccccchhhhhhhhccc
Q 001491 803 FEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 803 ~~~~~~~~lt~edf~~Al~~~ 823 (1068)
....+..+|++.|..-|
T Consensus 416 ----g~~~V~~~dVe~a~~lF 432 (450)
T COG1224 416 ----GSKRVEVEDVERAKELF 432 (450)
T ss_pred ----CCCeeehhHHHHHHHHH
Confidence 22456777777765544
No 271
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=3.1e-09 Score=130.13 Aligned_cols=154 Identities=18% Similarity=0.277 Sum_probs=113.9
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC----------------
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~---------------- 904 (1068)
..|+++.|++.+.+.|...+... +.+..+||+||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 57999999999999998887631 22345899999999999999999998742
Q ss_pred ---------cEEEEecchhhhhhccccHHHHHHHHHHHhcC----CCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHh
Q 001491 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1068)
Q Consensus 905 ---------~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~----~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~ 971 (1068)
+++.+++.+ ...-..++++...+... ...|++|||+|.+ .....+.|+..
T Consensus 82 ~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a~naLLK~ 144 (614)
T PRK14971 82 VAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAAFNAFLKT 144 (614)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHHHHHHHHH
Confidence 233333221 11235677777666432 3469999999998 45789999999
Q ss_pred ccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|+. ....+++|++|+....|-+.++. |. .++.|.+++.++....++.++++.
T Consensus 145 LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~e 196 (614)
T PRK14971 145 LEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKE 196 (614)
T ss_pred HhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHc
Confidence 984 34556666666677788889988 55 458999999999888888777664
No 272
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.01 E-value=5.6e-10 Score=111.26 Aligned_cols=110 Identities=26% Similarity=0.378 Sum_probs=73.7
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhh--hccccHHH------HHHHHHHHhcCCCeEEEEecCCccCC
Q 001491 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQA------VRDIFSKATAAAPCLLFFDEFDSIAP 951 (1068)
Q Consensus 880 ~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~--~~g~se~~------l~~lf~~a~~~~p~VLfiDEid~l~~ 951 (1068)
++||+||||||||++|+.+|+.++.+++.+.++..... +.|.-.-. ....+.++. ..++|++|||++.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 58999999999999999999999999999887653221 11111100 000000111 15679999999987
Q ss_pred CCCCCCCCcchHHHHHHHHhccCccc-----------cC------cEEEEEeCCCCC----CCChhhcCCCCc
Q 001491 952 KRGHDNTGVTDRVVNQFLTELDGVEV-----------LT------GVFVFAATSRPD----LLDAALLRPGRL 1003 (1068)
Q Consensus 952 ~r~~~~~~~~~~~~~~lL~~Ld~~~~-----------~~------~v~viatTn~~d----~ld~al~r~gRf 1003 (1068)
...++..|+..|+.-.. .. ++.+|||+|..+ .+++|+++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 56778888777764321 11 389999999998 79999999 87
No 273
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.01 E-value=2.4e-09 Score=122.02 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=105.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC-----CcEEEEecchh
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPEL 914 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g-----~~~i~v~~~el 914 (1068)
+..|+++.|.+++.+.+...+... ...+++|+||+|||||++++++++.+. ..++.++.++.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 357889999999999988876531 113689999999999999999999872 34555544332
Q ss_pred hhhhccccHHHHHHHHHH-Hhc-----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCC
Q 001491 915 LNKYIGASEQAVRDIFSK-ATA-----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1068)
Q Consensus 915 ~~~~~g~se~~l~~lf~~-a~~-----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn 988 (1068)
.+ ...+++.+.. +.. ..+.+++|||+|.+ .....+.|+..|+... ....+|+++|
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~~--~~~~lIl~~~ 140 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMYS--QNTRFILSCN 140 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcCC--CCCeEEEEeC
Confidence 11 1112222221 111 23569999999988 3345667777776433 2344555677
Q ss_pred CCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 989 RPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 989 ~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.+..+.+++.+ |+. .+.|++++.++...+++..+++.
T Consensus 141 ~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 141 YSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENE 177 (319)
T ss_pred CccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHc
Confidence 77777777877 664 58999999999999998888754
No 274
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.01 E-value=3.6e-09 Score=123.01 Aligned_cols=164 Identities=18% Similarity=0.192 Sum_probs=109.3
Q ss_pred CCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC---------CcEEEEecchh
Q 001491 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---------LRFISVKGPEL 914 (1068)
Q Consensus 844 ~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g---------~~~i~v~~~el 914 (1068)
+.+.|-++..+.+...+..... + ..+.+++++||||||||++++.+++.+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 3677777777777766552211 1 2235799999999999999999997652 46777776543
Q ss_pred hh----------hhc--c-------cc-HHHHHHHHHHHh-cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhcc
Q 001491 915 LN----------KYI--G-------AS-EQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1068)
Q Consensus 915 ~~----------~~~--g-------~s-e~~l~~lf~~a~-~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld 973 (1068)
.+ ... | .+ ++....++.... ..++.||+|||+|.+... ...++.+|+...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------DDDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------CcHHHHhHhcccc
Confidence 21 111 1 11 223344555443 345789999999999621 2245566665422
Q ss_pred Cc-cccCcEEEEEeCCCCCC---CChhhcCCCCcc-eEEEcCCCCHHHHHHHHHHHHH
Q 001491 974 GV-EVLTGVFVFAATSRPDL---LDAALLRPGRLD-RLLFCDFPSPRERLDILKVISR 1026 (1068)
Q Consensus 974 ~~-~~~~~v~viatTn~~d~---ld~al~r~gRfd-~~i~~~~p~~~~r~~Il~~~l~ 1026 (1068)
.. ....++.+|+++|.++. +++.+.+ ||. ..+.|++|+.++..+|++..++
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 11 12356888889998864 7788877 774 6799999999999999998886
No 275
>PRK05642 DNA replication initiation factor; Validated
Probab=98.99 E-value=1.8e-09 Score=117.43 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=97.5
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~ 955 (1068)
.+++|+||+|||||+|++++++++ |..++.++..++.... ..+.+..+. ..+|+|||++.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCC---
Confidence 578999999999999999998764 6788888887776421 223333332 248999999987432
Q ss_pred CCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC---CChhhcCCCCcc--eEEEcCCCCHHHHHHHHHHHHHhhcc
Q 001491 956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKVCD 1030 (1068)
Q Consensus 956 ~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~---ld~al~r~gRfd--~~i~~~~p~~~~r~~Il~~~l~~~~~ 1030 (1068)
.....+|...++.....+..++++++..|.. ..|.+.+ ||. .++.+.+|+.++|..|++..+...
T Consensus 113 ------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~-- 182 (234)
T PRK05642 113 ------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRR-- 182 (234)
T ss_pred ------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHc--
Confidence 1223445555554455556667666655544 4678887 874 567789999999999999655443
Q ss_pred CCCCCchhhHHHHHHHHHhhhhhcc
Q 001491 1031 TSIPFSSLFCNELLICKLWHFFMCV 1055 (1068)
Q Consensus 1031 ~~id~~~l~~~~~~~~~l~~~~~~~ 1055 (1068)
. +...+.+..++.+....-
T Consensus 183 -~-----~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 183 -G-----LHLTDEVGHFILTRGTRS 201 (234)
T ss_pred -C-----CCCCHHHHHHHHHhcCCC
Confidence 1 223345555555554443
No 276
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.99 E-value=4.8e-09 Score=121.33 Aligned_cols=121 Identities=20% Similarity=0.385 Sum_probs=80.6
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCCc-------EEEEec----chhhhhh----cccc--HHHHHHHHHHHhc--CCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR-------FISVKG----PELLNKY----IGAS--EQAVRDIFSKATA--AAP 938 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~~-------~i~v~~----~el~~~~----~g~s--e~~l~~lf~~a~~--~~p 938 (1068)
+.+++|+||||||||++|+.+|..++.. ++.+.. .+++..+ +|.. ...+.+++.+|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4689999999999999999999887432 222221 2333222 1111 1133455666654 357
Q ss_pred eEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccC--------------------ccccCcEEEEEeCCCCC----CCC
Q 001491 939 CLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG--------------------VEVLTGVFVFAATSRPD----LLD 994 (1068)
Q Consensus 939 ~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~--------------------~~~~~~v~viatTn~~d----~ld 994 (1068)
++|||||+++.- ..++..++++.|+. +.-..+++||||+|..| .+|
T Consensus 274 ~vliIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 274 YVFIIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred cEEEEehhhccC----------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 899999999863 34556666666652 12234799999999998 699
Q ss_pred hhhcCCCCcceEEEcCC
Q 001491 995 AALLRPGRLDRLLFCDF 1011 (1068)
Q Consensus 995 ~al~r~gRfd~~i~~~~ 1011 (1068)
.||+| ||.. |++.+
T Consensus 344 ~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 344 YALRR--RFSF-IDIEP 357 (459)
T ss_pred HHHHh--hhhe-EEecC
Confidence 99999 9965 55544
No 277
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.99 E-value=5.3e-09 Score=119.36 Aligned_cols=200 Identities=16% Similarity=0.133 Sum_probs=126.7
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccc
Q 001491 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1068)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l 632 (1068)
+.+++|.+..+..+++.+..+... +.+|||+|++||||+++|+++..... ....+++.++|..+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~-------------~~pVlI~GE~GtGK~~lA~~iH~~s~---r~~~pfv~v~c~~~ 68 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL-------------DKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAAL 68 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCCcHHHHHHHHHHhCC---ccCCCeEEEeCCCC
Confidence 456889999999999998776543 26799999999999999999986432 12368999999986
Q ss_pred cccchhhHHHHHHHHHH---------------HHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001491 633 SLEKGPIIRQALSNFIS---------------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1068)
Q Consensus 633 ~~~~~~~~~~~l~~~f~---------------~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1068)
.... +.. .+|. .......+.|||||+|.|. . .+...|...++.-
T Consensus 69 ~~~~---~~~---~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~-----------~----~~Q~~L~~~l~~~ 127 (326)
T PRK11608 69 NENL---LDS---ELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP-----------M----LVQEKLLRVIEYG 127 (326)
T ss_pred CHHH---HHH---HHccccccccCCcccccCCchhccCCCeEEeCChhhCC-----------H----HHHHHHHHHHhcC
Confidence 4221 111 1111 1122345689999999984 2 3334444444431
Q ss_pred c--cccCcccCCCcEEEEEecCCC-------CCCChhhhcCCccc-ccccCCCCCH--HHHHHHHHHHHhh----cc---
Q 001491 698 G--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS--- 758 (1068)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~-------~~L~~aL~~~gRF~-~~i~l~~P~~--~er~~IL~~~l~~----~~--- 758 (1068)
. ..+.......++.+|++++.. ..+.+.|.. ||. ..|.+|+... ++...++.+++.. .+
T Consensus 128 ~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~ 205 (326)
T PRK11608 128 ELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPL 205 (326)
T ss_pred cEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 1 101000111247888887752 234555655 663 3456655543 3444555555432 22
Q ss_pred -ccCCHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001491 759 -LECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 759 -l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
..++++++..+..+..-.+-++|++++++++..
T Consensus 206 ~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 206 FPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 347899999999988888899999999998764
No 278
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=3.8e-08 Score=109.33 Aligned_cols=195 Identities=20% Similarity=0.297 Sum_probs=116.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc------------cccccc----hhhHHHHHHHHH-HHHHh
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------------RLSLEK----GPIIRQALSNFI-SEALD 653 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s------------~l~~~~----~~~~~~~l~~~f-~~a~~ 653 (1068)
+.++|+||+|+|||++++.+++.+....... ...+++. .+.... .......+...+ .....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~--~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVA--AKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE--eeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4589999999999999999999876322111 1111111 010000 011112222222 22334
Q ss_pred cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCC--CCCC----Chhhh
Q 001491 654 HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKI----PQSLT 727 (1068)
Q Consensus 654 ~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~--~~~L----~~aL~ 727 (1068)
..+.+++|||++.+.. .....+..+.+ +..... ..+.++.+... .+.+ ...+.
T Consensus 122 ~~~~vliiDe~~~l~~---------------~~~~~l~~l~~-~~~~~~-----~~~~vvl~g~~~~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 122 GKRALLVVDEAQNLTP---------------ELLEELRMLSN-FQTDNA-----KLLQIFLVGQPEFRETLQSPQLQQLR 180 (269)
T ss_pred CCCeEEEEECcccCCH---------------HHHHHHHHHhC-cccCCC-----CeEEEEEcCCHHHHHHHcCchhHHHH
Confidence 5677999999988731 11222222221 111100 12333444332 1111 12344
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHhhcc----ccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCcc
Q 001491 728 SSGRFDFHVQLPAPAASERKAILEHEIQRRS----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (1068)
Q Consensus 728 ~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~----l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~ 803 (1068)
+ |+...+++++.+.++..+++...+...+ ..++++.++.+++.+.|+ ++.+..+++.+...+..+
T Consensus 181 ~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~-------- 249 (269)
T TIGR03015 181 Q--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLE-------- 249 (269)
T ss_pred h--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHc--------
Confidence 4 7777889999999999999998887543 358899999999999997 566999999998887765
Q ss_pred ccccccccchhhhhhhhcc
Q 001491 804 EKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 804 ~~~~~~~lt~edf~~Al~~ 822 (1068)
....++.+++..++..
T Consensus 250 ---~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 250 ---EKREIGGEEVREVIAE 265 (269)
T ss_pred ---CCCCCCHHHHHHHHHH
Confidence 2245888888877654
No 279
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.98 E-value=7e-09 Score=102.65 Aligned_cols=128 Identities=22% Similarity=0.374 Sum_probs=79.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHH---HHHHHHHHHhcCCeEEEEccch
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQA---LSNFISEALDHAPSIVIFDNLD 665 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~---l~~~f~~a~~~~PsILfIDEiD 665 (1068)
.+++++++||||||||++++.+++.+... ...++++++.............. ............+.++++||++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~ 94 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChh
Confidence 34679999999999999999999988421 15677888877654332221111 1122233444678899999999
Q ss_pred hhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCC--CCChhhhcCCcccccccCC
Q 001491 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDFHVQLP 739 (1068)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~--~L~~aL~~~gRF~~~i~l~ 739 (1068)
.+.. .....+...+....... .....+.+|++++... .+++.+.+ ||+.++.++
T Consensus 95 ~~~~---------------~~~~~~~~~i~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 95 SLSR---------------GAQNALLRVLETLNDLR---IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hhhH---------------HHHHHHHHHHHhcCcee---ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 8721 11223333333332110 0012478888888876 67777777 887677665
No 280
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.97 E-value=6e-09 Score=109.56 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=92.2
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcCCc------------------------EEEEecchhhhhhccccHHHHHHHHHH
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLR------------------------FISVKGPELLNKYIGASEQAVRDIFSK 932 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g~~------------------------~i~v~~~el~~~~~g~se~~l~~lf~~ 932 (1068)
.+..+||+||+|+|||++|+.+|+.+-.. +..+.... . ...-+.++++...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34569999999999999999999886331 22221100 0 0123566666766
Q ss_pred Hhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEE
Q 001491 933 ATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 1008 (1068)
Q Consensus 933 a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~ 1008 (1068)
+.. +...|++|||+|.+ .....+.||..|+. .....++|++|+.++.+.+++++ |. ..+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~-~~~~ 151 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RC-QVLP 151 (188)
T ss_pred HccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hc-EEee
Confidence 643 34579999999998 45678899999975 34456666677777889999998 66 4799
Q ss_pred cCCCCHHHHHHHHHHH
Q 001491 1009 CDFPSPRERLDILKVI 1024 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il~~~ 1024 (1068)
|.+|+.++..++++..
T Consensus 152 ~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 9999999988888765
No 281
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.96 E-value=4.5e-09 Score=103.00 Aligned_cols=123 Identities=28% Similarity=0.338 Sum_probs=82.6
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCCc---EEEEecchhhhh--------------hccccHHHHHHHHHHHhcCCCeE
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNK--------------YIGASEQAVRDIFSKATAAAPCL 940 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~~---~i~v~~~el~~~--------------~~g~se~~l~~lf~~a~~~~p~V 940 (1068)
+.+++|+||||||||++++.+|..++.. ++.+++...... .........+.++..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4589999999999999999999999775 777776654321 12234456778888888887899
Q ss_pred EEEecCCccCCCCCCCCCCcchHHHHHHHH-----hccCccccCcEEEEEeCCC-CCCCChhhcCCCCcceEEEcCCC
Q 001491 941 LFFDEFDSIAPKRGHDNTGVTDRVVNQFLT-----ELDGVEVLTGVFVFAATSR-PDLLDAALLRPGRLDRLLFCDFP 1012 (1068)
Q Consensus 941 LfiDEid~l~~~r~~~~~~~~~~~~~~lL~-----~Ld~~~~~~~v~viatTn~-~d~ld~al~r~gRfd~~i~~~~p 1012 (1068)
+||||++.+.... ....... ............+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999985321 1111110 1111234556778888886 3334445555 88888877654
No 282
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.96 E-value=1.4e-09 Score=133.78 Aligned_cols=417 Identities=13% Similarity=0.057 Sum_probs=212.9
Q ss_pred CCCCceEEEEcCCCCcHHHHH-HHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHh----------cC
Q 001491 587 LPLPGHILIHGPPGSGKTSLA-KAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----------HA 655 (1068)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLa-raLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~----------~~ 655 (1068)
+...++++++||||+|||++. -++-.++- ..+++++-+.-... ...+.-+-+.... .+
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~------~ev~~~Nfs~~t~T-----~s~ls~Ler~t~yy~~tg~~~l~PK 1559 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELI------TEVKYFNFSTCTMT-----PSKLSVLERETEYYPNTGVVRLYPK 1559 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhh------eeeeEEeeccccCC-----HHHHHHHHhhceeeccCCeEEEccC
Confidence 344588999999999999974 34433332 55666664432211 1111111111110 01
Q ss_pred ----CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCc
Q 001491 656 ----PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1068)
Q Consensus 656 ----PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gR 731 (1068)
-.|||.|||+..- .....++.- .-+++.|...-.-+..-...|.++.++.+.|+||++.+... ..-+.|
T Consensus 1560 ~~vK~lVLFcDeInLp~---~~~y~~~~v---I~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eR 1632 (3164)
T COG5245 1560 PVVKDLVLFCDEINLPY---GFEYYPPTV---IVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYER 1632 (3164)
T ss_pred cchhheEEEeeccCCcc---ccccCCCce---EEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHH
Confidence 1289999998432 222222111 12222333322224444456777889999999999776431 011113
Q ss_pred ccc---cccCCCCCHHHHHHHHHHHHhhccccC------CHHHH--------------HHHhhccCCCCchhHHHHHHHH
Q 001491 732 FDF---HVQLPAPAASERKAILEHEIQRRSLEC------SDEIL--------------LDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 732 F~~---~i~l~~P~~~er~~IL~~~l~~~~l~~------~~~~l--------------~~la~~t~g~s~~DL~~Lv~~a 788 (1068)
|.+ .+.+..|....+..|++.++.+.-+.+ ++... ........||+|+||...++..
T Consensus 1633 f~r~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i 1712 (3164)
T COG5245 1633 FIRKPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAI 1712 (3164)
T ss_pred HhcCceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHH
Confidence 432 467789999999999987766432222 11111 1111223689999988877544
Q ss_pred HHHHHhhhcccCCc----------------cccccccccchhhhhhhhcccccceeecccccccCCCCCCCCCC--Cchh
Q 001491 789 VHAAVGRYLHSDSS----------------FEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDV--GGLT 850 (1068)
Q Consensus 789 ~~~a~~r~~~~~~~----------------~~~~~~~~lt~edf~~Al~~~~P~slr~v~~~~~~~~~~~~~~i--~gl~ 850 (1068)
.-.|-.+....+.+ +..+.+....+++..+..-...| +............++++ .|++
T Consensus 1713 ~~yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~----e~~~g~i~e~~I~fS~Il~~g~~ 1788 (3164)
T COG5245 1713 FGYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIR----EMIAGHIGEAEITFSMILFFGMA 1788 (3164)
T ss_pred HhHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh----hhhhcccchhhhhHHHHHhccHH
Confidence 33222221000000 00000011111121111111111 11000000001122222 1111
Q ss_pred HH-HHHH----HHHHh---------------ccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEe
Q 001491 851 DI-QNAI----KEMIE---------------LPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK 910 (1068)
Q Consensus 851 ~~-k~~l----~e~i~---------------~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~ 910 (1068)
.+ ++.+ .+... ..+.|.-.+.+.-...++|.++.|..|+||+.+.+++++..+.+++++.
T Consensus 1789 ~l~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~e~~ 1868 (3164)
T COG5245 1789 CLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIF 1868 (3164)
T ss_pred HHhhhhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCccchhhhh
Confidence 11 1111 11111 0011112233333456789999999999999999999999999998887
Q ss_pred cchhhhhhccccHHHHHHHHHHHhc-CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCC
Q 001491 911 GPELLNKYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1068)
Q Consensus 911 ~~el~~~~~g~se~~l~~lf~~a~~-~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~ 989 (1068)
+..-.. +|+.+..+.....++.- ....++||||--.+ ...+|..|..+.....+.-++..|.
T Consensus 1869 ~hr~~~--~~Df~d~lk~~~~~~~~~~~r~Cl~I~Esi~~---------------es~fLe~~N~LL~n~~~~~lf~gne 1931 (3164)
T COG5245 1869 GHRDEL--TGDFRDSLKVQDLRRNIHGGRECLFIFESIPV---------------ESSFLEDFNPLLDNNRFLCLFSGNE 1931 (3164)
T ss_pred cccccc--hhhHHHHHHHHHHhccccCCceEEEEecCCcc---------------chHHHHHhhhhhhccccchhccchh
Confidence 765433 56666666555555422 33457888774322 3445555555556667777778887
Q ss_pred CCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh--------ccCCCCCchhhHHHHHH
Q 001491 990 PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV--------CDTSIPFSSLFCNELLI 1045 (1068)
Q Consensus 990 ~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~--------~~~~id~~~l~~~~~~~ 1045 (1068)
-+.|...+..- .+...+..-++++..+++-....+. ..+++++......+++.
T Consensus 1932 ~~~I~~nlr~~---~es~~L~~dTe~tlt~vFl~~~~~Nl~vVFs~c~s~d~~~~a~i~spal~ 1992 (3164)
T COG5245 1932 RIRIPENLRFV---FESTSLEKDTEATLTRVFLVYMEENLPVVFSACCSQDTSVLAGIRSPALK 1992 (3164)
T ss_pred HHHHHHHHHhh---hhccccccCCHHHHHHHHHHHHHhcCCeEEEEecCCCchHhhccCCHHHh
Confidence 77777766532 2223444557788877777665554 22566666665666554
No 283
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.95 E-value=6.3e-09 Score=125.93 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=104.9
Q ss_pred CCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEecchh
Q 001491 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPEL 914 (1068)
Q Consensus 845 ~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v~~~el 914 (1068)
.+.+-++..+.|...+.-.+. . ..+...++++|+||||||++++.+.+++ .+.++.+++..+
T Consensus 756 ~LPhREeEIeeLasfL~paIk------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIK------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHh------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 455555555555555442221 1 1122335699999999999999998765 256788988443
Q ss_pred hhhh----------------cc-ccHHHHHHHHHHHh--cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCc
Q 001491 915 LNKY----------------IG-ASEQAVRDIFSKAT--AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV 975 (1068)
Q Consensus 915 ~~~~----------------~g-~se~~l~~lf~~a~--~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~ 975 (1068)
...+ .| .+...+..+|.... .....||+|||||.|..+ ...++-.|+....
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR~~~-- 897 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFDWPT-- 897 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHHHhh--
Confidence 2211 01 12244566666542 234579999999999642 2344444444432
Q ss_pred cccCcEEEEEeCCCC---CCCChhhcCCCCcce-EEEcCCCCHHHHHHHHHHHHHhh
Q 001491 976 EVLTGVFVFAATSRP---DLLDAALLRPGRLDR-LLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 976 ~~~~~v~viatTn~~---d~ld~al~r~gRfd~-~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.....+.||+++|.. +.++|.+.. ||.. .|.|++|+.+++.+|++..++..
T Consensus 898 ~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A 952 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENC 952 (1164)
T ss_pred ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 234568899999864 457788776 6643 47899999999999999988763
No 284
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.95 E-value=1.5e-08 Score=119.83 Aligned_cols=176 Identities=19% Similarity=0.315 Sum_probs=120.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHH----hcCCeEEEE
Q 001491 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIF 661 (1068)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsILfI 661 (1068)
+.|+.+-+||+||||-||||||+.+|+..+ ..++.+++++-. ....++..+..+...-. ..+|.+|++
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaG------YsVvEINASDeR--t~~~v~~kI~~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAG------YSVVEINASDER--TAPMVKEKIENAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcC------ceEEEecccccc--cHHHHHHHHHHHHhhccccccCCCcceEEE
Confidence 345556799999999999999999999988 888999988744 33444555555444322 257999999
Q ss_pred ccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh-----hcccc-------CcccCCCcEEEEEecCCCCCCChhhhcC
Q 001491 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE-----YGEKR-------KSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (1068)
Q Consensus 662 DEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~-----~~~~~-------~~~~~~~~V~vIattn~~~~L~~aL~~~ 729 (1068)
||||.-. ......++.++.. ..... ......-..-||+.||... -|+|+.-
T Consensus 394 DEIDGa~---------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~L 456 (877)
T KOG1969|consen 394 DEIDGAP---------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPL 456 (877)
T ss_pred ecccCCc---------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhc
Confidence 9998742 1334444444431 11000 0000001235677788643 4666654
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 001491 730 GRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 730 gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
.-|...++|.+|......+-|+..+...++.++...+..++..|++ |++..++....
T Consensus 457 r~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQf 513 (877)
T KOG1969|consen 457 RPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQF 513 (877)
T ss_pred ccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999988775 66666554433
No 285
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.93 E-value=3.2e-09 Score=120.53 Aligned_cols=159 Identities=20% Similarity=0.275 Sum_probs=107.8
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC-------CcEEEE-ecc
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISV-KGP 912 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g-------~~~i~v-~~~ 912 (1068)
..|+++.|+++++..|.-....| .-+++||.|++|||||++|++++..+. .+|... +.+
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p 80 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDP 80 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCCh
Confidence 46889999999999998776643 225899999999999999999988762 122100 000
Q ss_pred h-----hhhh---------------h----ccccHHHH------HHHHHHHh---------cCCCeEEEEecCCccCCCC
Q 001491 913 E-----LLNK---------------Y----IGASEQAV------RDIFSKAT---------AAAPCLLFFDEFDSIAPKR 953 (1068)
Q Consensus 913 e-----l~~~---------------~----~g~se~~l------~~lf~~a~---------~~~p~VLfiDEid~l~~~r 953 (1068)
+ +... + .|.++..+ ...|.... .....+||+||++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL---- 156 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL---- 156 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC----
Confidence 1 0000 0 12233321 12222110 112349999999998
Q ss_pred CCCCCCcchHHHHHHHHhccCc----c-------ccCcEEEEEeCCCCC-CCChhhcCCCCcceEEEcCCCC-HHHHHHH
Q 001491 954 GHDNTGVTDRVVNQFLTELDGV----E-------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFPS-PRERLDI 1020 (1068)
Q Consensus 954 ~~~~~~~~~~~~~~lL~~Ld~~----~-------~~~~v~viatTn~~d-~ld~al~r~gRfd~~i~~~~p~-~~~r~~I 1020 (1068)
.+.++..|+..|+.. + ...++++++|.|..+ .+.++++. ||...+.++.|+ .+++.+|
T Consensus 157 -------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 157 -------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred -------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHH
Confidence 677888899888641 1 123578888777655 48999999 999999999998 6999999
Q ss_pred HHHHH
Q 001491 1021 LKVIS 1025 (1068)
Q Consensus 1021 l~~~l 1025 (1068)
++...
T Consensus 228 l~~~~ 232 (350)
T CHL00081 228 VEQRT 232 (350)
T ss_pred HHhhh
Confidence 98854
No 286
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.93 E-value=1.6e-08 Score=118.88 Aligned_cols=165 Identities=17% Similarity=0.218 Sum_probs=107.4
Q ss_pred CCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecchhh---
Q 001491 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELL--- 915 (1068)
Q Consensus 844 ~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-----g~~~i~v~~~el~--- 915 (1068)
+.+.|-++..+.+...+....+ + ..+.+++++||||||||++++.+++.+ +..++.+++....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 3455666666666655532111 1 123579999999999999999999876 5778888875432
Q ss_pred -------hhhcc-------cc-HHHHHHHHHHHh-cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccC
Q 001491 916 -------NKYIG-------AS-EQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLT 979 (1068)
Q Consensus 916 -------~~~~g-------~s-e~~l~~lf~~a~-~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~ 979 (1068)
..+.+ .+ +..+..++.... ...+.||+|||+|.+.... ....+..|+..++... ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhccC-CC
Confidence 11212 11 222333333333 3456899999999986111 2356777777665433 23
Q ss_pred cEEEEEeCCCCC---CCChhhcCCCCcc-eEEEcCCCCHHHHHHHHHHHHHh
Q 001491 980 GVFVFAATSRPD---LLDAALLRPGRLD-RLLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 980 ~v~viatTn~~d---~ld~al~r~gRfd-~~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
++.+|+++|..+ .+++.+.+ ||. ..|.|++++.++..+|++..++.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~ 222 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEE 222 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHh
Confidence 688888888764 36777765 553 57899999999999999988754
No 287
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.92 E-value=1.1e-08 Score=124.79 Aligned_cols=202 Identities=16% Similarity=0.183 Sum_probs=128.4
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
..+..++|.+..+.++++.+..+.... .+|||+|++|||||++|+++...... ...+++.++|.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~-------------~pvli~Ge~GtGK~~lA~~ih~~s~r---~~~pfv~i~c~ 256 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSN-------------STVLLRGESGTGKELIAKAIHYLSPR---AKRPFVKVNCA 256 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcC-------------CCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeecC
Confidence 346688999999999999987765432 67999999999999999999986432 23689999999
Q ss_pred cccccchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHH
Q 001491 631 RLSLEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~---------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (1068)
.+.... ++. .+|.. ......++|||||++.+. . .+...|...++
T Consensus 257 ~~~~~~---~~~---~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~-----------~----~~Q~~Ll~~l~ 315 (534)
T TIGR01817 257 ALSETL---LES---ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS-----------P----AFQAKLLRVLQ 315 (534)
T ss_pred CCCHHH---HHH---HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC-----------H----HHHHHHHHHHh
Confidence 874321 111 11110 111235699999999983 2 33344444444
Q ss_pred hhc--cccCcccCCCcEEEEEecCCC-------CCCChhhhcCCccc-ccccCCCCC--HHHHHHHHHHHHhhc------
Q 001491 696 EYG--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR------ 757 (1068)
Q Consensus 696 ~~~--~~~~~~~~~~~V~vIattn~~-------~~L~~aL~~~gRF~-~~i~l~~P~--~~er~~IL~~~l~~~------ 757 (1068)
.-. ..+.......++.+|++++.. ..+.+.|.. |+. ..+.+|+.. .++...++++++...
T Consensus 316 ~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~ 393 (534)
T TIGR01817 316 EGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR 393 (534)
T ss_pred cCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCC
Confidence 311 101000111247888887652 122333333 443 245666665 355556666665532
Q ss_pred cccCCHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001491 758 SLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 758 ~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
...++++.+..+..+....+.++|++++++++..
T Consensus 394 ~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 394 PLTITPSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred CCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 2468999999999988777889999999998754
No 288
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.92 E-value=5.9e-09 Score=118.21 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=56.3
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCcccCCCcEEEEEecCCCC-CCChhhhcCC
Q 001491 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1068)
Q Consensus 656 PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~L~~aL~~~g 730 (1068)
.++||+||++.+- ..+...|.+.|++-. ..+.......++++++++|+.+ .+++++..
T Consensus 129 ~GiL~lDEInrl~---------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 129 RGYLYIDEVNLLE---------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred CCeEEecChHhCC---------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--
Confidence 3599999999983 155566666665422 1111111123689999999755 58889998
Q ss_pred cccccccCCCCCH-HHHHHHHHHH
Q 001491 731 RFDFHVQLPAPAA-SERKAILEHE 753 (1068)
Q Consensus 731 RF~~~i~l~~P~~-~er~~IL~~~ 753 (1068)
||...+.+++|.. ++|.+|+...
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHh
Confidence 9998999988877 8889998864
No 289
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.92 E-value=5.6e-09 Score=119.34 Aligned_cols=210 Identities=19% Similarity=0.220 Sum_probs=131.2
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.+++|...++.++.+.+..+..++ ..|||.|++||||-.+||+|.+.-. ....+++++||
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd-------------~tVLi~GETGtGKElvAraIH~~S~---R~~kPfV~~NC 282 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD-------------STVLIRGETGTGKELVARAIHQLSP---RRDKPFVKLNC 282 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC-------------CeEEEecCCCccHHHHHHHHHhhCc---ccCCCceeeec
Confidence 3456689999999999999998887655 5699999999999999999988543 34488999999
Q ss_pred ccccccchh-hHHHHHHHHHHHHHh--------cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH-HHhhcc
Q 001491 630 SRLSLEKGP-IIRQALSNFISEALD--------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI-MDEYGE 699 (1068)
Q Consensus 630 s~l~~~~~~-~~~~~l~~~f~~a~~--------~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~-ld~~~~ 699 (1068)
..+...-.+ ++=...+..|.-|.. ...+-||+|||..+ +...+.++++.|.+. ++....
T Consensus 283 AAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 283 AALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred cccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecCC
Confidence 887533211 111111122222221 23458999999776 333444555544321 111221
Q ss_pred ccCcccCCCcEEEEEecCCCCCCChhhhcCCcccc-------cccCCCCCHHHHH----HHHHHHHh----hc---cccC
Q 001491 700 KRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAASERK----AILEHEIQ----RR---SLEC 761 (1068)
Q Consensus 700 ~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~-------~i~l~~P~~~er~----~IL~~~l~----~~---~l~~ 761 (1068)
. ..-..+|.+||+||+ +|....+ .|+|.. ++.+..|...+|. -+.+++++ .. .+.+
T Consensus 352 ~---r~ikVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~l 425 (550)
T COG3604 352 D---RTIKVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSL 425 (550)
T ss_pred C---ceeEEEEEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCccccc
Confidence 1 112236999999997 2222222 123321 3444444443332 22233333 22 3458
Q ss_pred CHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 762 SDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 762 ~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
+.++++.+..+..-.+-++|+++++||+..|
T Consensus 426 s~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 426 SAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 8999999988877778899999999999877
No 290
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.91 E-value=5.2e-09 Score=119.61 Aligned_cols=208 Identities=18% Similarity=0.183 Sum_probs=128.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.+++|.+..+++++++++.+- +...+||++|++||||+.+|+++...-. .. ...+++.+||
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a-------------p~~~~vLi~GetGtGKel~A~~iH~~s~-r~-~~~PFI~~NC 138 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA-------------PSGLPVLIIGETGTGKELFARLIHALSA-RR-AEAPFIAFNC 138 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC-------------CCCCcEEEecCCCccHHHHHHHHHHhhh-cc-cCCCEEEEEH
Confidence 3456789999999999999997732 3347799999999999999999994432 21 4589999999
Q ss_pred ccccccchhhHHHHHHHHHHHH---------------HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 001491 630 SRLSLEKGPIIRQALSNFISEA---------------LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a---------------~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1068)
..+........ +|... .+...+.||+|||..+- . .....|...+
T Consensus 139 a~~~en~~~~e------LFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP-----------~----~~Q~kLl~~l 197 (403)
T COG1221 139 AAYSENLQEAE------LFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP-----------P----EGQEKLLRVL 197 (403)
T ss_pred HHhCcCHHHHH------HhccccceeecccCCcCchheecCCCEEehhhhhhCC-----------H----hHHHHHHHHH
Confidence 98875543211 22211 11234599999999984 2 3334444555
Q ss_pred Hhhc--cccCcccCCCcEEEEEecCCC--CCCCh--hhhcCCcccccccCCCCCH--HHHHHHHHHHHh----hcccc--
Q 001491 695 DEYG--EKRKSSCGIGPIAFVASAQSL--EKIPQ--SLTSSGRFDFHVQLPAPAA--SERKAILEHEIQ----RRSLE-- 760 (1068)
Q Consensus 695 d~~~--~~~~~~~~~~~V~vIattn~~--~~L~~--aL~~~gRF~~~i~l~~P~~--~er~~IL~~~l~----~~~l~-- 760 (1068)
+... .-+.......+|.+|++|+.. +.+-. .+.++ |+...|++|+... +++..++++++. +.+..
T Consensus 198 e~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~ 276 (403)
T COG1221 198 EEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLS 276 (403)
T ss_pred HcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 5421 111112223468899888751 11212 23221 5555666666544 333344444443 33333
Q ss_pred -CCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHh
Q 001491 761 -CSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (1068)
Q Consensus 761 -~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~ 794 (1068)
.+++.+..+-.+.--.+-++|++++++++..+..
T Consensus 277 ~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 277 VDSPEALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred CCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 3345666666665555789999999999987643
No 291
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=4e-08 Score=112.67 Aligned_cols=188 Identities=20% Similarity=0.228 Sum_probs=116.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc----ee------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LV------ 621 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~----~~------ 621 (1068)
.+..++|++.+.+.+...+.. ...+..+||+||+|+|||++|+.+|+.+..... ..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~--------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE--------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc--------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 466788998888877665421 223456999999999999999999999865210 00
Q ss_pred --------------eeEEEEecc-ccc------ccchhhHHHHHHHHHHH-HHhcCCeEEEEccchhhhcCCCCCCCCCC
Q 001491 622 --------------AHIVFVCCS-RLS------LEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQP 679 (1068)
Q Consensus 622 --------------~~~~~i~~s-~l~------~~~~~~~~~~l~~~f~~-a~~~~PsILfIDEiD~L~~~~~~~~~~~~ 679 (1068)
..+..+... +-. .-..+.++. +.+.+.. .......|++|||+|.+..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~-l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRR-VGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHH-HHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 001111100 000 011233333 2233332 2223456999999999841
Q ss_pred chhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccc
Q 001491 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (1068)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l 759 (1068)
.-.+.|+..+++... ...+|..++.++.+.+.+++ |+. .+.|++|+.++..+++.......+
T Consensus 156 -----~aanaLLk~LEEpp~---------~~~fiLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~- 217 (351)
T PRK09112 156 -----NAANAILKTLEEPPA---------RALFILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQG- 217 (351)
T ss_pred -----HHHHHHHHHHhcCCC---------CceEEEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccC-
Confidence 233446666666443 24555556778888899998 764 899999999999999987432222
Q ss_pred cCCHHHHHHHhhccCCCCchhHHHH
Q 001491 760 ECSDEILLDVASKCDGYDAYDLEIL 784 (1068)
Q Consensus 760 ~~~~~~l~~la~~t~g~s~~DL~~L 784 (1068)
++++.+..++..+.|. ++....+
T Consensus 218 -~~~~~~~~i~~~s~G~-pr~Al~l 240 (351)
T PRK09112 218 -SDGEITEALLQRSKGS-VRKALLL 240 (351)
T ss_pred -CCHHHHHHHHHHcCCC-HHHHHHH
Confidence 6677788888887774 4433333
No 292
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.91 E-value=1.6e-08 Score=119.48 Aligned_cols=172 Identities=16% Similarity=0.211 Sum_probs=112.6
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHhcc----CC--chhh-----------hh----hCCccccceEEEECCCCCChhHHHH
Q 001491 838 GGRSGWDDVGGLTDIQNAIKEMIELP----SK--FPNI-----------FA----QAPLRLRSNVLLYGPPGCGKTHIVG 896 (1068)
Q Consensus 838 ~~~~~~~~i~gl~~~k~~l~e~i~~~----~~--~~~~-----------~~----~~~~~~~~~lLL~GppGtGKT~lA~ 896 (1068)
.....|.++.|-+.+-+.+..++..- .+ ...+ +. ....++..-+||+||||-||||||+
T Consensus 265 y~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAH 344 (877)
T KOG1969|consen 265 YRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAH 344 (877)
T ss_pred cChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHH
Confidence 33456777778777777776665521 00 0111 11 1122345668899999999999999
Q ss_pred HHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHH--------hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHH
Q 001491 897 AAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA--------TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQF 968 (1068)
Q Consensus 897 alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a--------~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~l 968 (1068)
.+|+++|+.++++|.++-. +...++.....| ...+|.+|+|||||.. ...+++.+
T Consensus 345 ViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-----------~~~~Vdvi 407 (877)
T KOG1969|consen 345 VIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-----------PRAAVDVI 407 (877)
T ss_pred HHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------cHHHHHHH
Confidence 9999999999999998742 333444333333 1257889999999975 35667777
Q ss_pred HHhccCc-------cc--c-------C---cEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 969 LTELDGV-------EV--L-------T---GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 969 L~~Ld~~-------~~--~-------~---~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+..+..- .. . . .--||+.+|. +.-|||+.-.=|-++|.|.+|+.....+=++.++.+-
T Consensus 408 lslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE 484 (877)
T KOG1969|consen 408 LSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRE 484 (877)
T ss_pred HHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhh
Confidence 7666411 11 0 0 1346667884 5567775322478899999999988877777777554
No 293
>PRK06620 hypothetical protein; Validated
Probab=98.90 E-value=3.7e-09 Score=113.21 Aligned_cols=114 Identities=11% Similarity=0.148 Sum_probs=76.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT 958 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~ 958 (1068)
..++||||+|||||+|++++++..+..++. .... ..+.+ ....+|+|||+|.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~--------- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENW--------- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccc---------
Confidence 579999999999999999999887653322 1000 01111 12359999999954
Q ss_pred CcchHHHHHHHHhccCccccCcEEEEEeCCCCCC--CChhhcCCCCcce--EEEcCCCCHHHHHHHHHHHHHh
Q 001491 959 GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL--LDAALLRPGRLDR--LLFCDFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 959 ~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~--ld~al~r~gRfd~--~i~~~~p~~~~r~~Il~~~l~~ 1027 (1068)
....+-.++ +.+...+..++++++..|.. + |+|+. |+.. ++.+.+|+.+++..+++...+.
T Consensus 98 --~~~~lf~l~---N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 98 --QEPALLHIF---NIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred --hHHHHHHHH---HHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 122222333 33334556677766665554 5 78887 8853 6899999999999999888775
No 294
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.89 E-value=6.4e-09 Score=120.88 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=128.8
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
....++|....++++.+.+..+.... .+|||+|++||||-.+||+|.+.-. ....+|+.+||..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~-------------a~VLI~GESGtGKElvAr~IH~~S~---R~~~PFVavNcaA 202 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSD-------------ASVLITGESGTGKELVARAIHQASP---RAKGPFIAVNCAA 202 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCCcHHHHHHHHHhhCc---ccCCCceeeeccc
Confidence 45678999999999999997766544 5699999999999999999988543 2337899999987
Q ss_pred ccccchhhHHHHHHHHHH---------------HHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 001491 632 LSLEKGPIIRQALSNFIS---------------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~---------------~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (1068)
+.....+. ++|. .......+.||||||..+. ...+.++++.|.+. .
T Consensus 203 ip~~l~ES------ELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp-----------l~~Q~kLLRvLqe~--~ 263 (464)
T COG2204 203 IPENLLES------ELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP-----------LELQVKLLRVLQER--E 263 (464)
T ss_pred CCHHHHHH------HhhcccccCcCCcccccCcceeEcCCceEEeeccccCC-----------HHHHHHHHHHHHcC--e
Confidence 65432111 1222 1111245699999997772 33344454444321 1
Q ss_pred hccccCcccCCCcEEEEEecCCC-------CCCChhhhcCCcccccccCCCCCHHHHHH----HHHHHHhh----c---c
Q 001491 697 YGEKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFDFHVQLPAPAASERKA----ILEHEIQR----R---S 758 (1068)
Q Consensus 697 ~~~~~~~~~~~~~V~vIattn~~-------~~L~~aL~~~gRF~~~i~l~~P~~~er~~----IL~~~l~~----~---~ 758 (1068)
+..-+......-+|.||++||.. ..+-+.|.- |+. ++.+..|...+|.+ ++++++.+ . .
T Consensus 264 ~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~ 340 (464)
T COG2204 264 FERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPP 340 (464)
T ss_pred eEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCC
Confidence 11111111122369999999872 112223322 333 45666666555543 44444442 2 2
Q ss_pred ccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 759 LECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 759 l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
..++++.+..+..+..--+-++|++++++++..+
T Consensus 341 ~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 341 KGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 3488888998888877778899999999988654
No 295
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.89 E-value=2e-08 Score=114.29 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=85.2
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCcccCCCcEEEEEecCCCC-CCChhhhcCC
Q 001491 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1068)
Q Consensus 656 PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~L~~aL~~~g 730 (1068)
.++||+||++.+- . .+...|.+.|+.-. ..+.......++++|+++|..+ .+++++..
T Consensus 132 ~GvL~lDEi~~L~-----------~----~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld-- 194 (337)
T TIGR02030 132 RGILYIDEVNLLE-----------D----HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD-- 194 (337)
T ss_pred CCEEEecChHhCC-----------H----HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--
Confidence 4699999999973 1 44455555554321 1111111112588888888755 58899999
Q ss_pred cccccccCCCCCH-HHHHHHHHHHHhh-----------------------------ccccCCHHHHHHH---hhccCCCC
Q 001491 731 RFDFHVQLPAPAA-SERKAILEHEIQR-----------------------------RSLECSDEILLDV---ASKCDGYD 777 (1068)
Q Consensus 731 RF~~~i~l~~P~~-~er~~IL~~~l~~-----------------------------~~l~~~~~~l~~l---a~~t~g~s 777 (1068)
||...+.++.|+. ++|.+|++..... ..+.++++.+..+ +..+..-+
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s 274 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDG 274 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCC
Confidence 9999999998876 8888888763221 1123455544433 33333334
Q ss_pred chhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcccccc
Q 001491 778 AYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1068)
Q Consensus 778 ~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~~P~ 826 (1068)
+|.-..+++.|...|..+ +...++.+|+..+..-..+.
T Consensus 275 ~Ra~i~l~raArA~Aal~-----------GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 275 LRGELTLNRAAKALAAFE-----------GRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred CcHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHHHHH
Confidence 455555555555444433 33568889988776554443
No 296
>PRK04132 replication factor C small subunit; Provisional
Probab=98.88 E-value=1.6e-08 Score=125.84 Aligned_cols=167 Identities=18% Similarity=0.181 Sum_probs=124.0
Q ss_pred ceEEEEc--CCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhc--CCeEEEEccchh
Q 001491 591 GHILIHG--PPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH--APSIVIFDNLDS 666 (1068)
Q Consensus 591 ~~vLL~G--ppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~--~PsILfIDEiD~ 666 (1068)
-+-+..| |++.||||+|+++|+++... .....++.+|+++..+ .+.+++.+.......... ...|+||||+|.
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rg--id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERG--INVIREKVKEFARTKPIGGASFKIIFLDEADA 641 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCccc--HHHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence 3577789 99999999999999998422 2226789999987543 345555554443222111 236999999999
Q ss_pred hhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHH
Q 001491 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 746 (1068)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er 746 (1068)
+.. ...+.|+..|+.+.. .+.+|++||++..+.+++++ |.. .+.|++|+.++.
T Consensus 642 Lt~---------------~AQnALLk~lEep~~---------~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i 694 (846)
T PRK04132 642 LTQ---------------DAQQALRRTMEMFSS---------NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDI 694 (846)
T ss_pred CCH---------------HHHHHHHHHhhCCCC---------CeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHH
Confidence 941 345667788887653 37899999999999999999 754 789999999999
Q ss_pred HHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHH
Q 001491 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 747 ~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a 788 (1068)
...++..+.+.++.++++.+..++..+.|- .+..-++++.+
T Consensus 695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GD-lR~AIn~Lq~~ 735 (846)
T PRK04132 695 AKRLRYIAENEGLELTEEGLQAILYIAEGD-MRRAINILQAA 735 (846)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 999999888888889999999999998883 34444444433
No 297
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=3.2e-08 Score=113.44 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=110.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc----E--EEE----
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----F--ISV---- 909 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~----~--i~v---- 909 (1068)
+..++++.|++++.+.+...+... +.+..+||+||+|+|||++|+.+|+.+... . ...
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 467889999999999999887632 233469999999999999999999887441 0 000
Q ss_pred -ec-----------chhh---hhh--------ccccHHHHHHHHHHH----hcCCCeEEEEecCCccCCCCCCCCCCcch
Q 001491 910 -KG-----------PELL---NKY--------IGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962 (1068)
Q Consensus 910 -~~-----------~el~---~~~--------~g~se~~l~~lf~~a----~~~~p~VLfiDEid~l~~~r~~~~~~~~~ 962 (1068)
.+ ++++ ..+ ..-+-..+|++.... ..++..|++|||+|.+ ..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~~ 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------NR 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------CH
Confidence 00 1110 000 001123445444332 2345679999999998 67
Q ss_pred HHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHH
Q 001491 963 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI 1024 (1068)
Q Consensus 963 ~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~ 1024 (1068)
...|.||+.|+. ...++++|..|+.++.+.|.++. |+ ..+.|++|+.++..++++..
T Consensus 156 ~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 156 NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 788999999984 34455555567878888899987 76 57999999999999998873
No 298
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=5.3e-08 Score=110.83 Aligned_cols=180 Identities=15% Similarity=0.151 Sum_probs=114.0
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc--eeeeEEEEec
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCC 629 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~--~~~~~~~i~~ 629 (1068)
+|.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+..... ....+..+..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~--------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK--------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc--------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 366788888888877765521 223456899999999999999999998753211 1112222322
Q ss_pred ccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCc
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
.+-..-..+.++..+..+..........|++||++|.+. ....+.|+..+++... .
T Consensus 68 ~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~---------------~~a~naLLK~LEepp~---------~ 123 (313)
T PRK05564 68 INKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT---------------EQAQNAFLKTIEEPPK---------G 123 (313)
T ss_pred ccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC---------------HHHHHHHHHHhcCCCC---------C
Confidence 111112233444433322222222345699999998883 1335566677776442 3
Q ss_pred EEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCC
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1068)
Q Consensus 710 V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~ 776 (1068)
+.+|.+|+.++.+.+.+++ |.. .++|++|+.++....+...+. .++++.+..++..+.|-
T Consensus 124 t~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 124 VFIILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGI 183 (313)
T ss_pred eEEEEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCC
Confidence 5666666778899999999 654 789999999998877765432 35666677777777664
No 299
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.87 E-value=2.9e-08 Score=112.80 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=98.1
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCcee-eeEE-----
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV-AHIV----- 625 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~-~~~~----- 625 (1068)
.|+.++|.+..+..++..+ .+ +..+++||.|++|||||+++|++++.+....... ..|.
T Consensus 15 pf~~ivGq~~~k~al~~~~---~~------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNV---ID------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CHHHHhChHHHHHHHHHhc---cC------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 4778899988776664422 11 2347899999999999999999998875321100 0010
Q ss_pred -EEeccccccc-------------------chhhHHHH------HHHHHHHHH---------hcCCeEEEEccchhhhcC
Q 001491 626 -FVCCSRLSLE-------------------KGPIIRQA------LSNFISEAL---------DHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 626 -~i~~s~l~~~-------------------~~~~~~~~------l~~~f~~a~---------~~~PsILfIDEiD~L~~~ 670 (1068)
...|+...+. ..+..... +...+.... ....++||+||++.+-
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 0000000000 00001110 111111111 1224699999999984
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCcccCCCcEEEEEecCCCC-CCChhhhcCCcccccccCCCCC-HH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSGRFDFHVQLPAPA-AS 744 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~L~~aL~~~gRF~~~i~l~~P~-~~ 744 (1068)
. .+...|.+.|+.-. ..+.......++++|+|.|..+ .+++++.. ||...+.+..|+ .+
T Consensus 158 ---------~----~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 ---------D----HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred ---------H----HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 1 44445555555411 0111111123688888888765 58999999 999999999997 58
Q ss_pred HHHHHHHHH
Q 001491 745 ERKAILEHE 753 (1068)
Q Consensus 745 er~~IL~~~ 753 (1068)
.+.+|++..
T Consensus 223 ~e~~il~~~ 231 (350)
T CHL00081 223 LRVKIVEQR 231 (350)
T ss_pred HHHHHHHhh
Confidence 999998864
No 300
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.87 E-value=1e-08 Score=116.62 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=103.7
Q ss_pred CCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc-------CCcEE--------
Q 001491 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFI-------- 907 (1068)
Q Consensus 843 ~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-------g~~~i-------- 907 (1068)
|..+.|+++++..+.-.+..| ..+|+++.|++|+|||+++++++... +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 678899999998876655433 24689999999999999999999877 22221
Q ss_pred -----EE---------------ecchhhh-----hhccccH--HH--------HHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 908 -----SV---------------KGPELLN-----KYIGASE--QA--------VRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 908 -----~v---------------~~~el~~-----~~~g~se--~~--------l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
.. ...++-. .++|..+ .. -..++.+|. ..+||+||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhC---
Confidence 00 0011110 1222211 00 011222222 349999999998
Q ss_pred CCCCCCCcchHHHHHHHHhccCcc-----------ccCcEEEEEeCCCCC-CCChhhcCCCCcceEEEcCCCCH-HHHHH
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFPSP-RERLD 1019 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~-----------~~~~v~viatTn~~d-~ld~al~r~gRfd~~i~~~~p~~-~~r~~ 1019 (1068)
.+.+++.|+..|+.-. ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 5788899998886321 123578888887554 58999999 9999999999975 89999
Q ss_pred HHHHHH
Q 001491 1020 ILKVIS 1025 (1068)
Q Consensus 1020 Il~~~l 1025 (1068)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998743
No 301
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=3.9e-08 Score=113.38 Aligned_cols=157 Identities=20% Similarity=0.195 Sum_probs=112.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcE----E--------
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF----I-------- 907 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~----i-------- 907 (1068)
+..++++.|++++++.+...+... +.+..+||+||+|+||+++|.++|+.+-+.- -
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 467899999999999999887642 3345699999999999999999998762110 0
Q ss_pred -EEe-------------cchhhhhh-----cc------ccHHHHHHHHHHH----hcCCCeEEEEecCCccCCCCCCCCC
Q 001491 908 -SVK-------------GPELLNKY-----IG------ASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNT 958 (1068)
Q Consensus 908 -~v~-------------~~el~~~~-----~g------~se~~l~~lf~~a----~~~~p~VLfiDEid~l~~~r~~~~~ 958 (1068)
.+. -+++.--. .| -.-+.+|++...+ ..+.+.|++|||+|.+
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--------- 153 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--------- 153 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc---------
Confidence 000 01111000 00 1124456665544 3356789999999998
Q ss_pred CcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHH
Q 001491 959 GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI 1024 (1068)
Q Consensus 959 ~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~ 1024 (1068)
.....|.||+.|+ +...++++|.+|+.++.+.+.+++ |. ..+.|++|+.++..+++...
T Consensus 154 --~~~aanaLLK~LE--epp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 154 --NANAANALLKVLE--EPPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred --CHHHHHHHHHHHh--cCCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHh
Confidence 6788999999997 445667777789999999888877 66 45899999999988888764
No 302
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.86 E-value=3.1e-09 Score=111.05 Aligned_cols=118 Identities=24% Similarity=0.340 Sum_probs=68.1
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC-CcE---EE---------
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-LRF---IS--------- 908 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g-~~~---i~--------- 908 (1068)
++.+|.|++.+|+++.-...- +.|+||+||||||||++|+.+...+- ... .+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 368999999999998876552 25899999999999999999997761 110 00
Q ss_pred -------EecchhhhhhccccHHHH--------HHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhcc
Q 001491 909 -------VKGPELLNKYIGASEQAV--------RDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1068)
Q Consensus 909 -------v~~~el~~~~~g~se~~l--------~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld 973 (1068)
+...-+...--..+...+ -..+..|.. .|||+||+-.+ .+.+++.|++.|+
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef-----------~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF-----------DRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS------------HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc-----------CHHHHHHHHHHHH
Confidence 000000000011111111 011222323 39999999877 7899999999996
Q ss_pred Ccc-----------ccCcEEEEEeCC
Q 001491 974 GVE-----------VLTGVFVFAATS 988 (1068)
Q Consensus 974 ~~~-----------~~~~v~viatTn 988 (1068)
.-. .--++++|+|+|
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~N 157 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMN 157 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-
T ss_pred CCeEEEEECCceEEEecccEEEEEec
Confidence 321 122578888887
No 303
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.86 E-value=1.2e-08 Score=118.94 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=83.4
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcCC--cEEEEe-----cchhhhhhccccHHHHHHHHHHHhcC---CCeEEEEecC
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVK-----GPELLNKYIGASEQAVRDIFSKATAA---APCLLFFDEF 946 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g~--~~i~v~-----~~el~~~~~g~se~~l~~lf~~a~~~---~p~VLfiDEi 946 (1068)
.++++||+||||||||++|++++..++. .|..+. ..++++...- ....-..-|.+...+ ...+||+|||
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i-~~~~~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSI-QALKDEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHH-hhhhhcCchhhhcCCccccccEEeeccc
Confidence 3579999999999999999999998743 233222 2233322100 000001223322222 2349999999
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHhccCcc--------ccCcEEEEEeCCCCCC---CChhhcCCCCcceEEEcCCCC-H
Q 001491 947 DSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------VLTGVFVFAATSRPDL---LDAALLRPGRLDRLLFCDFPS-P 1014 (1068)
Q Consensus 947 d~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--------~~~~v~viatTn~~d~---ld~al~r~gRfd~~i~~~~p~-~ 1014 (1068)
..+ .....+.||..|..-. .....++++|||.... ..+|+.. ||-..+.+++|+ .
T Consensus 117 ~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~ 183 (498)
T PRK13531 117 WKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDK 183 (498)
T ss_pred ccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCch
Confidence 987 6789999999994211 2223455556674322 3458888 998889999997 4
Q ss_pred HHHHHHHHHH
Q 001491 1015 RERLDILKVI 1024 (1068)
Q Consensus 1015 ~~r~~Il~~~ 1024 (1068)
++-.+|++..
T Consensus 184 ~~e~~lL~~~ 193 (498)
T PRK13531 184 ANFRSMLTSQ 193 (498)
T ss_pred HHHHHHHHcc
Confidence 5557777653
No 304
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.85 E-value=8.7e-09 Score=122.16 Aligned_cols=136 Identities=19% Similarity=0.342 Sum_probs=95.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecchhhhhhccccHH---HHHHHHHHHhcCCCeEEEEecCCccC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ---AVRDIFSKATAAAPCLLFFDEFDSIA 950 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~-----g~~~i~v~~~el~~~~~g~se~---~l~~lf~~a~~~~p~VLfiDEid~l~ 950 (1068)
.+++|||++|||||+|++++++.+ +..++.++..++...+...... .+..+.... ...++|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 469999999999999999999854 5788999998988776543222 222222222 345699999999884
Q ss_pred CCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCC-CCC---CChhhcCCCCcc--eEEEcCCCCHHHHHHHHHHH
Q 001491 951 PKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR-PDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVI 1024 (1068)
Q Consensus 951 ~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~-~d~---ld~al~r~gRfd--~~i~~~~p~~~~r~~Il~~~ 1024 (1068)
++ ......|...++.....+..+|+ |++. |+. +++.+.. ||. -++.+.+|+.++|..|++..
T Consensus 220 ~k---------~~~~e~lf~l~N~~~~~~k~iIl-tsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YK---------EKTNEIFFTIFNNFIENDKQLFF-SSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CC---------HHHHHHHHHHHHHHHHcCCcEEE-ECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHH
Confidence 32 23444555555544444554554 5554 433 5777877 885 47788999999999999998
Q ss_pred HHhh
Q 001491 1025 SRKV 1028 (1068)
Q Consensus 1025 l~~~ 1028 (1068)
++..
T Consensus 288 ~~~~ 291 (450)
T PRK14087 288 IKNQ 291 (450)
T ss_pred HHhc
Confidence 8763
No 305
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.85 E-value=3.9e-08 Score=123.45 Aligned_cols=208 Identities=15% Similarity=0.171 Sum_probs=124.7
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
..+.+++|.+..+..+.+.+..+... ..+|||+|++|||||++|+++...... ...+++.++|.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-------------~~pVLI~GE~GTGK~~lA~~ih~~s~r---~~~~~v~i~c~ 436 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-------------DSTVLILGETGTGKELIARAIHNLSGR---NNRRMVKMNCA 436 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCcCHHHHHHHHHHhcCC---CCCCeEEEecc
Confidence 45668899999999999988765542 257999999999999999999886432 22688999998
Q ss_pred cccccchhh---------HHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--c
Q 001491 631 RLSLEKGPI---------IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--E 699 (1068)
Q Consensus 631 ~l~~~~~~~---------~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~ 699 (1068)
.+....... .................++|||||++.+- . .+...|.+.++... .
T Consensus 437 ~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~-----------~----~~Q~~L~~~l~~~~~~~ 501 (686)
T PRK15429 437 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP-----------L----ELQPKLLRVLQEQEFER 501 (686)
T ss_pred cCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCC-----------H----HHHHHHHHHHHhCCEEe
Confidence 764221110 00000001111122345799999999983 2 33344444443311 1
Q ss_pred ccCcccCCCcEEEEEecCCCC-------CCChhhhcCCcccccccCCCCCHHHH----HHHHHHHHhh----cc--c-cC
Q 001491 700 KRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASER----KAILEHEIQR----RS--L-EC 761 (1068)
Q Consensus 700 ~~~~~~~~~~V~vIattn~~~-------~L~~aL~~~gRF~~~i~l~~P~~~er----~~IL~~~l~~----~~--l-~~ 761 (1068)
.+.......++.+|++++..- .+...|.. |+. .+.+..|...+| ..++++++.+ .+ . .+
T Consensus 502 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~ 578 (686)
T PRK15429 502 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSI 578 (686)
T ss_pred CCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 111111123588999887631 12222222 332 233444444444 3345554432 22 2 37
Q ss_pred CHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 762 SDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 762 ~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
+++.+..+..+..-.+.++|++++++++..+
T Consensus 579 s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 579 PAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 8999999998888788999999999988643
No 306
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.4e-08 Score=113.69 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=110.1
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC--------cEEEEecch
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------RFISVKGPE 913 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~--------~~i~v~~~e 913 (1068)
.|+++.|++.+++.+...+... +.+..+||+||.|+|||++|+++|+.+-+ ++..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 4788999999999988886521 23346799999999999999999997632 222332210
Q ss_pred hhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCC
Q 001491 914 LLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1068)
Q Consensus 914 l~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~ 989 (1068)
++ ...-..+|++...+. .+...|++||++|.+ +....|.||+.|+ +...++++|.+|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LE--epp~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIE--EPPKGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCCCeEEEEEeCC
Confidence 11 112345777766442 334569999999998 6778999999998 45567777777788
Q ss_pred CCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHH
Q 001491 990 PDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI 1024 (1068)
Q Consensus 990 ~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~ 1024 (1068)
++.+.|.++. |. ..+.|.+|+.++....++..
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHH
Confidence 9999999988 55 57899999999887777644
No 307
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=7.1e-08 Score=111.26 Aligned_cols=180 Identities=18% Similarity=0.194 Sum_probs=112.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1068)
.+.+++|.+.+++.+.+.+.. ...+..+||+||+|+||+++|.++|+.+-.....
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~--------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRS--------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 467889998888887765422 2234569999999999999999999998532210
Q ss_pred -----------------eeeEEEEecc--ccc-----ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCC
Q 001491 621 -----------------VAHIVFVCCS--RLS-----LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEG 676 (1068)
Q Consensus 621 -----------------~~~~~~i~~s--~l~-----~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~ 676 (1068)
...+..+... +-. .-..+.++.....+-.......+.|++|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 0011222210 100 01123333322222222233567799999999883
Q ss_pred CCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhh
Q 001491 677 SQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (1068)
Q Consensus 677 ~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~ 756 (1068)
..-.+.|+..+++... ..++|.+|+.++.+.+.+++ |.. .+.|++|+.++..+++....
T Consensus 155 -------~~aanaLLK~LEepp~---------~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~-- 213 (365)
T PRK07471 155 -------ANAANALLKVLEEPPA---------RSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAG-- 213 (365)
T ss_pred -------HHHHHHHHHHHhcCCC---------CeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhc--
Confidence 1334556666666432 35677788888888888888 655 78999999999988887642
Q ss_pred ccccCCHHHHHHHhhccCCC
Q 001491 757 RSLECSDEILLDVASKCDGY 776 (1068)
Q Consensus 757 ~~l~~~~~~l~~la~~t~g~ 776 (1068)
...++..+..++..+.|-
T Consensus 214 --~~~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 214 --PDLPDDPRAALAALAEGS 231 (365)
T ss_pred --ccCCHHHHHHHHHHcCCC
Confidence 223444445677777663
No 308
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.84 E-value=3.5e-08 Score=115.15 Aligned_cols=141 Identities=14% Similarity=0.175 Sum_probs=77.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc-----cccccchhhHHHHH-HHHHHHHHhc---CCeEE
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-----RLSLEKGPIIRQAL-SNFISEALDH---APSIV 659 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s-----~l~~~~~~~~~~~l-~~~f~~a~~~---~PsIL 659 (1068)
.++++||+||||||||++|+++++.+.... ++.+..|. ++.|.. .+...- ...|...... ...+|
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp~DLfG~l--~i~~~~~~g~f~r~~~G~L~~A~lL 111 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTPEEVFGPL--SIQALKDEGRYQRLTSGYLPEAEIV 111 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCcHHhcCcH--HHhhhhhcCchhhhcCCccccccEE
Confidence 347899999999999999999999865321 22333322 222211 001000 1112111111 23489
Q ss_pred EEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-cccCcccCCCcEEEEEecCCCCC---CChhhhcCCccccc
Q 001491 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFDFH 735 (1068)
Q Consensus 660 fIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-~~~~~~~~~~~V~vIattn~~~~---L~~aL~~~gRF~~~ 735 (1068)
|+|||+.+. ......|+..|++-. ..+......+..++++++|.... ..+++.. ||...
T Consensus 112 fLDEI~ras---------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFlir 174 (498)
T PRK13531 112 FLDEIWKAG---------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIR 174 (498)
T ss_pred eecccccCC---------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEE
Confidence 999998763 145566666664422 11111222233455555564221 2247777 89888
Q ss_pred ccCCCCC-HHHHHHHHHH
Q 001491 736 VQLPAPA-ASERKAILEH 752 (1068)
Q Consensus 736 i~l~~P~-~~er~~IL~~ 752 (1068)
+.+|+|+ .++..+|+..
T Consensus 175 i~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 175 LWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EECCCCCchHHHHHHHHc
Confidence 9999997 4555777764
No 309
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.84 E-value=7.1e-08 Score=105.87 Aligned_cols=67 Identities=22% Similarity=0.405 Sum_probs=49.7
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC--CcEEEEecchhhh
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLN 916 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g--~~~i~v~~~el~~ 916 (1068)
.-+.++|+.+++++.--.+++. +.+...++++|+.||||||||.||-++|+++| .+|..++++++++
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mi--------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMI--------KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHH--------HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 4566889998888765444332 12334567999999999999999999999996 6777777666643
No 310
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.84 E-value=5.6e-08 Score=108.65 Aligned_cols=66 Identities=26% Similarity=0.398 Sum_probs=45.7
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC--CcEEEEecchhh
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELL 915 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g--~~~i~v~~~el~ 915 (1068)
.-+.++|+.+++++.--.+.+.. .+.-.++++||.||||||||.||-++|+++| .+|+.+++++++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk--------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIK--------EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHH--------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHh--------cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 34678999999988766555321 1222457899999999999999999999996 677777766664
No 311
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.84 E-value=6.9e-08 Score=116.96 Aligned_cols=202 Identities=15% Similarity=0.170 Sum_probs=126.2
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccc
Q 001491 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1068)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l 632 (1068)
..+++|.+..+.++.+.+..+... +.+|||+|++||||+++|+++...... ...+++.++|..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~-------------~~pVlI~Ge~GtGK~~~A~~ih~~s~r---~~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS-------------DLNVLILGETGVGKELVARAIHAASPR---ADKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC-------------CCcEEEECCCCccHHHHHHHHHHhCCc---CCCCeEEEEcccC
Confidence 456888999999999998776543 367999999999999999999986432 2368999999987
Q ss_pred cccchhhHHHHHHHHHH---------------HHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001491 633 SLEKGPIIRQALSNFIS---------------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1068)
Q Consensus 633 ~~~~~~~~~~~l~~~f~---------------~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1068)
..... +. .+|. .......+.|||||+|.|. . .+...|.+.++.-
T Consensus 250 ~~~~~---e~---~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~-----------~----~~Q~~Ll~~l~~~ 308 (509)
T PRK05022 250 PESLA---ES---ELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP-----------L----ALQAKLLRVLQYG 308 (509)
T ss_pred ChHHH---HH---HhcCccccccCCCcccCCcchhhcCCCEEEecChhhCC-----------H----HHHHHHHHHHhcC
Confidence 53211 11 1111 0112345689999999983 2 3333444444321
Q ss_pred c--cccCcccCCCcEEEEEecCCC-------CCCChhhhcCCccc-ccccCCCCCH--HHHHHHHHHHHhh-------cc
Q 001491 698 G--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR-------RS 758 (1068)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~-------~~L~~aL~~~gRF~-~~i~l~~P~~--~er~~IL~~~l~~-------~~ 758 (1068)
. .-+.......++.+|++|+.. ..+...|.. |+. ..|++|+... ++...++++++.+ ..
T Consensus 309 ~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~ 386 (509)
T PRK05022 309 EIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRS 386 (509)
T ss_pred CEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCC
Confidence 1 100001111257899988763 123333333 333 1244554433 3333444444432 22
Q ss_pred ccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHH
Q 001491 759 LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1068)
Q Consensus 759 l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~ 793 (1068)
..++++.+..+..+..-.+.++|++++++++..+.
T Consensus 387 ~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 387 LRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 45899999999999888899999999999987653
No 312
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.83 E-value=4.6e-08 Score=118.54 Aligned_cols=204 Identities=14% Similarity=0.162 Sum_probs=124.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
..|.+++|.+..+.++++++..+.... .+|||+|++||||+++|+++..... ....+++.++|.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~-------------~pvlI~GE~GtGK~~lA~aiH~~s~---r~~~pfv~inca 264 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLD-------------APLLITGDTGTGKDLLAYACHLRSP---RGKKPFLALNCA 264 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCccHHHHHHHHHHhCC---CCCCCeEEeccc
Confidence 457789999999999999887654422 5699999999999999999876432 222678899999
Q ss_pred cccccchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHH
Q 001491 631 RLSLEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (1068)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~---------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (1068)
.+..... +. .+|.. ......+.|||||++.+. ...+..+.+++.+.
T Consensus 265 ~~~~~~~---e~---elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~-- 325 (520)
T PRK10820 265 SIPDDVV---ES---ELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMS-----------PRMQAKLLRFLNDG-- 325 (520)
T ss_pred cCCHHHH---HH---HhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCC-----------HHHHHHHHHHHhcC--
Confidence 8753211 11 11210 111235689999999983 23333444443221
Q ss_pred hhccccCcccCCCcEEEEEecCCC-------CCCChhhhcCCccc-ccccCCCCCH--HHHHHHHHHHHh----hcc---
Q 001491 696 EYGEKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQ----RRS--- 758 (1068)
Q Consensus 696 ~~~~~~~~~~~~~~V~vIattn~~-------~~L~~aL~~~gRF~-~~i~l~~P~~--~er~~IL~~~l~----~~~--- 758 (1068)
.+...+.......++.+|++|+.. ..+.+.|.. |+. ..+++|+... +++..++++++. +.+
T Consensus 326 ~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~ 403 (520)
T PRK10820 326 TFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPR 403 (520)
T ss_pred CcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCC
Confidence 011111111112357888887653 123444444 443 3455555543 234444444433 333
Q ss_pred ccCCHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001491 759 LECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 759 l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
..++++++..+..+....+-++|++++.+|+..
T Consensus 404 ~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 404 PKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 358899999998887777889999999988764
No 313
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.83 E-value=1.5e-08 Score=117.60 Aligned_cols=207 Identities=14% Similarity=0.167 Sum_probs=126.3
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
..+|.+++|....+.++++.++.+...+ ..|||.|++||||..+|+++.+.- .....+|+.+||
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~td-------------stVLi~GESGTGKElfA~~IH~~S---~R~~~PFIaiNC 304 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTD-------------STVLILGESGTGKELFARAIHNLS---PRANGPFIAINC 304 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCC-------------CcEEEecCCCccHHHHHHHHHhcC---cccCCCeEEEec
Confidence 4568899999999999998887665443 569999999999999999998843 344588999999
Q ss_pred ccccccchhh-HHHHHHHHHHHHHh---------cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-
Q 001491 630 SRLSLEKGPI-IRQALSNFISEALD---------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1068)
Q Consensus 630 s~l~~~~~~~-~~~~l~~~f~~a~~---------~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1068)
..+...-.++ +=..-...|.-|.. ...+-||+|||..+- . .+...|++.+++-.
T Consensus 305 aAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp-----------l----~LQaKLLRVLQEkei 369 (560)
T COG3829 305 AAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP-----------L----PLQAKLLRVLQEKEI 369 (560)
T ss_pred ccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC-----------H----HHHHHHHHHHhhceE
Confidence 7765321110 00000011112211 123479999997772 2 34444444444321
Q ss_pred -cccCcccCCCcEEEEEecCCCCCCChhhhcCCcccc-------cccCCCCCHHHH----HHHHHHHHhh----cc--c-
Q 001491 699 -EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAASER----KAILEHEIQR----RS--L- 759 (1068)
Q Consensus 699 -~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~-------~i~l~~P~~~er----~~IL~~~l~~----~~--l- 759 (1068)
.-+.......+|.+|||||.. +-..+ ..|+|.. ++.+..|...+| ..+..+++.+ ++ .
T Consensus 370 ~rvG~t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~ 446 (560)
T COG3829 370 ERVGGTKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVK 446 (560)
T ss_pred EecCCCCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcc
Confidence 111112223479999999972 11111 1223322 344444444443 3334444442 22 2
Q ss_pred cCCHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 001491 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1068)
Q Consensus 760 ~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~ 790 (1068)
.++++++..+.++..-.+-|+|++++++++.
T Consensus 447 ~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 447 GLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred cCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 2788999988888777788999999999885
No 314
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.82 E-value=1.6e-09 Score=104.22 Aligned_cols=111 Identities=25% Similarity=0.356 Sum_probs=62.2
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCCcEEEEecc-hhh-hhhccccHHHH-HHHHHHHh-cCCCeEEEEecCCccCCCCCC
Q 001491 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP-ELL-NKYIGASEQAV-RDIFSKAT-AAAPCLLFFDEFDSIAPKRGH 955 (1068)
Q Consensus 880 ~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~-el~-~~~~g~se~~l-~~lf~~a~-~~~p~VLfiDEid~l~~~r~~ 955 (1068)
|+||.|+||+|||++|+++|+.+|..|..|.+. ++. +...|..--+. ...|.-.+ ---..|+++||+.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 799999999999999999999999999988753 332 11111100000 00000000 000139999999997
Q ss_pred CCCCcchHHHHHHHHhccCcc---------ccCcEEEEEeCCCCCC-----CChhhcCCCCc
Q 001491 956 DNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATSRPDL-----LDAALLRPGRL 1003 (1068)
Q Consensus 956 ~~~~~~~~~~~~lL~~Ld~~~---------~~~~v~viatTn~~d~-----ld~al~r~gRf 1003 (1068)
..+++..||..|..-. -.++.+||||-|..+. ++.|++. ||
T Consensus 75 -----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 -----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 6788999999996321 2346899999998763 8888887 77
No 315
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.82 E-value=5.1e-09 Score=121.35 Aligned_cols=198 Identities=21% Similarity=0.259 Sum_probs=133.1
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~ 917 (1068)
..++++.|-......+.+...... +....+|+.|.+||||-.+|+++-+.+ +.+|+.+||+.+-..
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 578888887766666555544321 234689999999999999999999887 689999998765322
Q ss_pred -------------hccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-----cc-
Q 001491 918 -------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----VL- 978 (1068)
Q Consensus 918 -------------~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----~~- 978 (1068)
|.|+....-..+|+.|..+ -||+|||..+ ....+..||..|+.-+ +.
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCCCC
Confidence 3444443345677777666 8999999998 6788899998886321 11
Q ss_pred ---CcEEEEEeCCCCCCCChhhcCCCCcce-------EEEcCCCCHHHHHHHHHHHHHhhcc-----CCCCCchhhHHHH
Q 001491 979 ---TGVFVFAATSRPDLLDAALLRPGRLDR-------LLFCDFPSPRERLDILKVISRKVCD-----TSIPFSSLFCNEL 1043 (1068)
Q Consensus 979 ---~~v~viatTn~~d~ld~al~r~gRfd~-------~i~~~~p~~~~r~~Il~~~l~~~~~-----~~id~~~l~~~~~ 1043 (1068)
-.|-||||||+. +-.++ ..|||.+ ++.+..|...+|.+-+..+...+++ ..-+. .-.+.++
T Consensus 377 ~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v-~~ls~~a 452 (560)
T COG3829 377 PIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNV-KGLSPDA 452 (560)
T ss_pred ceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCc-ccCCHHH
Confidence 158999999973 21122 2244422 5667777777776544444444322 12222 2235666
Q ss_pred HHHHHhhhhhcccccccccccccc
Q 001491 1044 LICKLWHFFMCVSLNLSSYIIFCF 1067 (1068)
Q Consensus 1044 ~~~~l~~~~~~~~~~~~~~~~~~~ 1067 (1068)
+..-+.+...+|..+|++++|.++
T Consensus 453 ~~~L~~y~WPGNVRELeNviER~v 476 (560)
T COG3829 453 LALLLRYDWPGNVRELENVIERAV 476 (560)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHH
Confidence 667777788889999999998875
No 316
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.82 E-value=4.3e-08 Score=122.34 Aligned_cols=201 Identities=13% Similarity=0.175 Sum_probs=123.6
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1068)
.|.+++|.+..+.++++.+..+.... .+|||+|++||||+++|+++...... ...+++.++|..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~-------------~pvli~Ge~GtGK~~~A~~ih~~s~r---~~~pfv~vnc~~ 386 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSS-------------FPVLLCGEEGVGKALLAQAIHNESER---AAGPYIAVNCQL 386 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcC-------------CCEEEECCCCcCHHHHHHHHHHhCCc---cCCCeEEEECCC
Confidence 46788899999999999887765432 56999999999999999999886432 226899999988
Q ss_pred ccccchhhHHHHHHHHHHH------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-
Q 001491 632 LSLEKGPIIRQALSNFISE------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1068)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1068)
+..... -.++|.. ......+.|||||++.+. . .+...|.+.++.-.
T Consensus 387 ~~~~~~------~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~-----------~----~~Q~~Ll~~l~~~~~ 445 (638)
T PRK11388 387 YPDEAL------AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS-----------P----ELQSALLQVLKTGVI 445 (638)
T ss_pred CChHHH------HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC-----------H----HHHHHHHHHHhcCcE
Confidence 753211 1122221 111245689999999983 2 33334444444321
Q ss_pred -cccCcccCCCcEEEEEecCCCC-------CCChhhhcCCccc-ccccCCCCCH--HHHHHHHHHHHhhc------cccC
Q 001491 699 -EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQRR------SLEC 761 (1068)
Q Consensus 699 -~~~~~~~~~~~V~vIattn~~~-------~L~~aL~~~gRF~-~~i~l~~P~~--~er~~IL~~~l~~~------~l~~ 761 (1068)
..+.......++.+|++|+..- .+.+.|.- |+. ..+.+|+... ++...++++++... .+.+
T Consensus 446 ~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~ 523 (638)
T PRK11388 446 TRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKI 523 (638)
T ss_pred EeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCc
Confidence 0010000012478888887521 12222222 222 2344544433 23344455554432 2458
Q ss_pred CHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001491 762 SDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 762 ~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
+++.+..+..+....+.++|++++++++..
T Consensus 524 s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 524 DDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred CHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 999999999988777889999999987753
No 317
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3e-08 Score=110.97 Aligned_cols=97 Identities=29% Similarity=0.465 Sum_probs=75.1
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhh-hhccccHH-HHHHHHHHH----hcCCCeEEEEecCCccCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIGASEQ-AVRDIFSKA----TAAAPCLLFFDEFDSIAP 951 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~-~~~g~se~-~l~~lf~~a----~~~~p~VLfiDEid~l~~ 951 (1068)
.+++||.||+|+|||.||+.+|+.++.+|...++..+.. .|+|+.-+ -+.+++..| .+.+..|+||||+|++..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 478999999999999999999999999999999988864 58998754 445666554 223345999999999985
Q ss_pred CCCCC---CCCcchHHHHHHHHhccC
Q 001491 952 KRGHD---NTGVTDRVVNQFLTELDG 974 (1068)
Q Consensus 952 ~r~~~---~~~~~~~~~~~lL~~Ld~ 974 (1068)
+...- -+-.+..+...||+.++|
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 43221 133456788999999975
No 318
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.80 E-value=5.1e-08 Score=117.30 Aligned_cols=205 Identities=15% Similarity=0.158 Sum_probs=123.6
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
..|.+++|.+..+..+.+.+..+.... .+|||+|++||||+++|+++..... ....+++.++|.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~-------------~pVLI~GE~GTGKe~lA~~IH~~S~---r~~~pfv~inC~ 272 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSD-------------ATVLILGESGTGKELVAQAIHQLSG---RRDFPFVAINCG 272 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC-------------CcEEEECCCCcCHHHHHHHHHHhcC---cCCCCEEEeccc
Confidence 446789999999999999887665433 6799999999999999999987542 223789999998
Q ss_pred cccccchhh-----HHHH--------HHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001491 631 RLSLEKGPI-----IRQA--------LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1068)
Q Consensus 631 ~l~~~~~~~-----~~~~--------l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1068)
.+.....+. .+.. -..+|+. ...+.|||||++.|. . .+...|.+.++..
T Consensus 273 ~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp-----------~----~~Q~~Ll~~L~~~ 334 (526)
T TIGR02329 273 AIAESLLEAELFGYEEGAFTGARRGGRTGLIEA---AHRGTLFLDEIGEMP-----------L----PLQTRLLRVLEER 334 (526)
T ss_pred cCChhHHHHHhcCCcccccccccccccccchhh---cCCceEEecChHhCC-----------H----HHHHHHHHHHhcC
Confidence 875321110 0000 0011221 234689999999983 2 3344444444432
Q ss_pred c--cccCcccCCCcEEEEEecCCCC-------CCChhhhcCCccc-ccccCCCCCH--HHHHHHHHHHHhh----ccccC
Q 001491 698 G--EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RSLEC 761 (1068)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~~-------~L~~aL~~~gRF~-~~i~l~~P~~--~er~~IL~~~l~~----~~l~~ 761 (1068)
. .-+.......++.+|++++..- .+.+.|.. |+. ..+++|+... ++...++.+++.. .+..+
T Consensus 335 ~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 412 (526)
T TIGR02329 335 EVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPD 412 (526)
T ss_pred cEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 1 1000011112468888887531 12222222 332 2345555533 3444455555543 34457
Q ss_pred CHHHHHH-------HhhccCCCCchhHHHHHHHHHHH
Q 001491 762 SDEILLD-------VASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 762 ~~~~l~~-------la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
+++.+.. +..+..-.+-++|++++++++..
T Consensus 413 ~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 8877766 77777667889999999998764
No 319
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.2e-08 Score=104.36 Aligned_cols=198 Identities=23% Similarity=0.285 Sum_probs=124.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccc--cchhhHHHHHHHHHHHHHh----cCCeEEEEccc
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL--EKGPIIRQALSNFISEALD----HAPSIVIFDNL 664 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~--~~~~~~~~~l~~~f~~a~~----~~PsILfIDEi 664 (1068)
.++||.||.|||||.||+.+|+.|+ .+|...++..|.. --+++.+..+..+++.|.. .+.+|++||||
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~Ln------VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEI 171 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEI 171 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhC------CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEech
Confidence 5699999999999999999999998 8888889888873 3345677777788777643 45679999999
Q ss_pred hhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc--------ccC----cccCCCcEEEEEecCC--------------
Q 001491 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--------KRK----SSCGIGPIAFVASAQS-------------- 718 (1068)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~--------~~~----~~~~~~~V~vIattn~-------------- 718 (1068)
|++...+.++.-. ..-.-+.+.+.|+.++++-.. +.. -..+..++.||+..--
T Consensus 172 DKIarkSeN~SIT-RDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~ 250 (408)
T COG1219 172 DKIARKSENPSIT-RDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKK 250 (408)
T ss_pred hhhhccCCCCCcc-cccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCC
Confidence 9998654333211 001123666777777775321 110 0112235555543210
Q ss_pred --------C-----C--------CCChhhhcC-------CcccccccCCCCCHHHHHHHHHH-----------HHh--hc
Q 001491 719 --------L-----E--------KIPQSLTSS-------GRFDFHVQLPAPAASERKAILEH-----------EIQ--RR 757 (1068)
Q Consensus 719 --------~-----~--------~L~~aL~~~-------gRF~~~i~l~~P~~~er~~IL~~-----------~l~--~~ 757 (1068)
. . -.+..|..- ||+.....+...+.+.+.+||.. ++. ..
T Consensus 251 ~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V 330 (408)
T COG1219 251 GIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGV 330 (408)
T ss_pred cccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCc
Confidence 0 0 012222221 47776778889999999988751 121 22
Q ss_pred cccCCHHHHHHHhhcc--CCCCchhHHHHHHHHHHHHHhh
Q 001491 758 SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGR 795 (1068)
Q Consensus 758 ~l~~~~~~l~~la~~t--~g~s~~DL~~Lv~~a~~~a~~r 795 (1068)
.+.++++++..+|... ...-+|-|+.++++.....+..
T Consensus 331 ~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfe 370 (408)
T COG1219 331 ELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFE 370 (408)
T ss_pred eEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhh
Confidence 3557888888887753 2333566777777776655443
No 320
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.79 E-value=8e-08 Score=102.20 Aligned_cols=160 Identities=19% Similarity=0.297 Sum_probs=116.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCC---------------ce--------eeeEEEEecccccccchhhHHHHHHHH
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK---------------DL--------VAHIVFVCCSRLSLEKGPIIRQALSNF 647 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~---------------~~--------~~~~~~i~~s~l~~~~~~~~~~~l~~~ 647 (1068)
.|+|+|||+|+||-|.+.++.+++.... .. ..+...+++++......-.++..++++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 4799999999999999999999875211 00 022334445554433333334444433
Q ss_pred HHHHH-----hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCC
Q 001491 648 ISEAL-----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI 722 (1068)
Q Consensus 648 f~~a~-----~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L 722 (1068)
-+... ...-.+++|.|+|.|.. .....|.+.|+.|.. ++.+|..||+...+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~---------------dAQ~aLRRTMEkYs~---------~~RlIl~cns~Sri 170 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTR---------------DAQHALRRTMEKYSS---------NCRLILVCNSTSRI 170 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhH---------------HHHHHHHHHHHHHhc---------CceEEEEecCcccc
Confidence 22110 11224899999999952 445668888888875 37899999999999
Q ss_pred ChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCC
Q 001491 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1068)
Q Consensus 723 ~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s 777 (1068)
-+++++ |.- .+.+|.|+.++...++...+.+.++.++.+.+..+|+.++|..
T Consensus 171 IepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 171 IEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNL 222 (351)
T ss_pred hhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccH
Confidence 999999 543 5789999999999999999999999999999999999988753
No 321
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.79 E-value=9e-08 Score=115.05 Aligned_cols=207 Identities=15% Similarity=0.151 Sum_probs=120.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhcc-----CCceeeeEEE
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH-----HKDLVAHIVF 626 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~-----~~~~~~~~~~ 626 (1068)
.+.+++|.+..+.++.+.+..+.... .+|||+|++||||+++|+++...+.. ......+|+.
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~-------------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSS-------------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCC-------------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 46789999999999999886655433 67999999999999999999886210 1223478999
Q ss_pred EecccccccchhhH-----HHHH--------HHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 627 VCCSRLSLEKGPII-----RQAL--------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 627 i~~s~l~~~~~~~~-----~~~l--------~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
++|..+.....+.. +..+ ..+|+. ...+.||||||+.+- . .+...|.+.
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp-----------~----~~Q~kLl~~ 345 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI---AHGGTLFLDEIGEMP-----------L----PLQTRLLRV 345 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhc---cCCCEEEEcChHhCC-----------H----HHHHHHHhh
Confidence 99998753221110 0000 011221 234689999999983 2 333444444
Q ss_pred HHhhc--cccCcccCCCcEEEEEecCCC-C------CCChhhhcCCccc-ccccCCCCCH--HHHHHHHHHHHhh----c
Q 001491 694 MDEYG--EKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----R 757 (1068)
Q Consensus 694 ld~~~--~~~~~~~~~~~V~vIattn~~-~------~L~~aL~~~gRF~-~~i~l~~P~~--~er~~IL~~~l~~----~ 757 (1068)
++... .-+.......++.+|++|+.. . .+.+.|.. |+. ..+++|+... ++...++++++.+ .
T Consensus 346 L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~ 423 (538)
T PRK15424 346 LEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAAL 423 (538)
T ss_pred hhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc
Confidence 44321 100111112257889888753 1 11222222 222 1344444432 3344455666554 3
Q ss_pred cccCCHHHH-------HHHhhccCCCCchhHHHHHHHHHHH
Q 001491 758 SLECSDEIL-------LDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 758 ~l~~~~~~l-------~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
+..++++.+ ..+..+..-.+-++|++++++++..
T Consensus 424 ~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 424 SAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 445666554 4555565666789999999998763
No 322
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.77 E-value=2.1e-08 Score=99.96 Aligned_cols=117 Identities=21% Similarity=0.363 Sum_probs=69.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccccc------chhh-HHHHH-HHHHHHHHhcCCeEEEEcc
Q 001491 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------KGPI-IRQAL-SNFISEALDHAPSIVIFDN 663 (1068)
Q Consensus 592 ~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~------~~~~-~~~~l-~~~f~~a~~~~PsILfIDE 663 (1068)
+|||+||||||||++++.+|+.++ ..+..+.|...... ..-. ....+ ...+..+ ...+.+++|||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a-~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRA-MRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTT-HHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeeccccccccccccccc-ccceeEEEECC
Confidence 589999999999999999999996 66777776553211 1000 00000 0000000 02567999999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccc---cCcccCCC-------cEEEEEecCCCC----CCChhhhcC
Q 001491 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---RKSSCGIG-------PIAFVASAQSLE----KIPQSLTSS 729 (1068)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~---~~~~~~~~-------~V~vIattn~~~----~L~~aL~~~ 729 (1068)
++..- ..+...|..+++...-. ........ ++.+|+|+|+.+ .+++++++
T Consensus 74 in~a~---------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~- 137 (139)
T PF07728_consen 74 INRAP---------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD- 137 (139)
T ss_dssp CGG-----------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT-
T ss_pred cccCC---------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh-
Confidence 99863 25666677777653211 01111111 389999999988 78999999
Q ss_pred Ccc
Q 001491 730 GRF 732 (1068)
Q Consensus 730 gRF 732 (1068)
||
T Consensus 138 -Rf 139 (139)
T PF07728_consen 138 -RF 139 (139)
T ss_dssp -T-
T ss_pred -hC
Confidence 76
No 323
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=4e-08 Score=111.78 Aligned_cols=129 Identities=22% Similarity=0.306 Sum_probs=95.6
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcCC------------------------cEEEEecchhhhhhccccHHHHHHHHHH
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFSK 932 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g~------------------------~~i~v~~~el~~~~~g~se~~l~~lf~~ 932 (1068)
.+..+||+||+|+|||++|+++|+.+-+ +++.+...+- ++ .-.-+.+|++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 4456999999999999999999988743 1222221100 00 1123567776665
Q ss_pred Hh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEE
Q 001491 933 AT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 1008 (1068)
Q Consensus 933 a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~ 1008 (1068)
+. .++..|++|||+|++ +....|.||+.|+ +...++++|.+|+.++.+.|.+++ |... +.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LE--EPp~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~ 161 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLE--EPSGDTVLLLISHQPSRLLPTIKS--RCQQ-QA 161 (328)
T ss_pred HhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHh--CCCCCeEEEEEECChhhCcHHHHh--hcee-ee
Confidence 53 345679999999999 6789999999998 455788888999999999999998 6644 89
Q ss_pred cCCCCHHHHHHHHHHH
Q 001491 1009 CDFPSPRERLDILKVI 1024 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il~~~ 1024 (1068)
|++|+.++..+.++..
T Consensus 162 ~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 162 CPLPSNEESLQWLQQA 177 (328)
T ss_pred CCCcCHHHHHHHHHHh
Confidence 9999998887777643
No 324
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.4e-07 Score=107.30 Aligned_cols=156 Identities=17% Similarity=0.255 Sum_probs=103.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCce------------------eeeEEEEeccccc-ccchhhHHHHHHHHHHH
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLS-LEKGPIIRQALSNFISE 650 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~------------------~~~~~~i~~s~l~-~~~~~~~~~~l~~~f~~ 650 (1068)
+..+||+||+|+|||++|+++|+.+...... ...+..+....-. .-..+.+++....+...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 4569999999999999999999998643110 0123333332111 12345555544444333
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCC
Q 001491 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1068)
Q Consensus 651 a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~g 730 (1068)
.......|++||++|.+. ..-.+.|+..+++... ++.+|.+|+.++.+.+.++|
T Consensus 102 ~~~~~~kv~iI~~a~~m~---------------~~aaNaLLK~LEEPp~---------~~~fiL~t~~~~~ll~TI~S-- 155 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMN---------------RNAANALLKSLEEPSG---------DTVLLLISHQPSRLLPTIKS-- 155 (328)
T ss_pred cccCCCeEEEECChhhCC---------------HHHHHHHHHHHhCCCC---------CeEEEEEECChhhCcHHHHh--
Confidence 333455699999999984 1445667777777543 37888999999999999999
Q ss_pred cccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCC
Q 001491 731 RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1068)
Q Consensus 731 RF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~ 776 (1068)
|.. .+.|++|+.++..+.+..... ..+++....++....|-
T Consensus 156 Rc~-~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 156 RCQ-QQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGS 196 (328)
T ss_pred hce-eeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCC
Confidence 766 689999999988877765321 23444555666666664
No 325
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.76 E-value=7.5e-08 Score=109.90 Aligned_cols=122 Identities=24% Similarity=0.318 Sum_probs=90.8
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC------------------------CcEEEEecchhhhhhccccHHHHHHHHHHHhc
Q 001491 880 NVLLYGPPGCGKTHIVGAAAAACS------------------------LRFISVKGPELLNKYIGASEQAVRDIFSKATA 935 (1068)
Q Consensus 880 ~lLL~GppGtGKT~lA~alA~~~g------------------------~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~ 935 (1068)
.+||+||||+|||++|.++|+.+. -++++++.++....- -....++++-.....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 499999999999999999999986 477777776653311 123445555444322
Q ss_pred ----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCC
Q 001491 936 ----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF 1011 (1068)
Q Consensus 936 ----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~ 1011 (1068)
++..|++|||+|.+ +..+.|.++..|. +.....++|.+||.+..|-+.+.. |. ..+.|.+
T Consensus 104 ~~~~~~~kviiidead~m-----------t~~A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~ 167 (325)
T COG0470 104 SPLEGGYKVVIIDEADKL-----------TEDAANALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKP 167 (325)
T ss_pred CCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cc-eeeecCC
Confidence 34679999999999 5688999999997 667778888899999998888887 44 4478877
Q ss_pred CCHHHHHH
Q 001491 1012 PSPRERLD 1019 (1068)
Q Consensus 1012 p~~~~r~~ 1019 (1068)
|+...+..
T Consensus 168 ~~~~~~i~ 175 (325)
T COG0470 168 PSRLEAIA 175 (325)
T ss_pred chHHHHHH
Confidence 66544433
No 326
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.75 E-value=3.2e-08 Score=122.46 Aligned_cols=154 Identities=20% Similarity=0.293 Sum_probs=104.5
Q ss_pred CCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc--------------------
Q 001491 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------------------- 902 (1068)
Q Consensus 843 ~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-------------------- 902 (1068)
|..|.|++.++..+.-....+ ..+++||.|++|||||++|++++..+
T Consensus 3 f~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 678999999888776554422 12579999999999999999999987
Q ss_pred ---------------CCcEEEEecchhhhhhccccH--HHH--------HHHHHHHhcCCCeEEEEecCCccCCCCCCCC
Q 001491 903 ---------------SLRFISVKGPELLNKYIGASE--QAV--------RDIFSKATAAAPCLLFFDEFDSIAPKRGHDN 957 (1068)
Q Consensus 903 ---------------g~~~i~v~~~el~~~~~g~se--~~l--------~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~ 957 (1068)
..+|+.+.........+|.-+ ..+ ..++..| ...||||||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC--------
Confidence 234444433322222233211 001 1111122 2249999999998
Q ss_pred CCcchHHHHHHHHhccCc----cc-------cCcEEEEEeCCCC-CCCChhhcCCCCcceEEEcCCCC-HHHHHHHHHHH
Q 001491 958 TGVTDRVVNQFLTELDGV----EV-------LTGVFVFAATSRP-DLLDAALLRPGRLDRLLFCDFPS-PRERLDILKVI 1024 (1068)
Q Consensus 958 ~~~~~~~~~~lL~~Ld~~----~~-------~~~v~viatTn~~-d~ld~al~r~gRfd~~i~~~~p~-~~~r~~Il~~~ 1024 (1068)
.+.+++.|+..|+.- .. ..++.+|+|+|.. ..+.++|+. ||+..|.++.+. .+++.+|++..
T Consensus 139 ---~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 139 ---DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ---CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 678899999998632 11 1358889988853 358889998 999889888775 67888888764
Q ss_pred H
Q 001491 1025 S 1025 (1068)
Q Consensus 1025 l 1025 (1068)
.
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 4
No 327
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.75 E-value=2.5e-08 Score=102.97 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=79.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhc-cCCceeeeEEEEecccccccchhhHHHHHHHHHHHH----HhcCCeEEEEccc
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLE-HHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNL 664 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~-~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a----~~~~PsILfIDEi 664 (1068)
-..+||+||+|+|||.+|+++|+.+. ... ..++.++|+.+.. .+.....+...+..+ ......|||||||
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~---~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSE---RPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSC---CEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCc---cchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 35699999999999999999999997 222 5789999999887 111111122222211 1122249999999
Q ss_pred hhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc--ccCcccCCCcEEEEEecCCCC
Q 001491 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--KRKSSCGIGPIAFVASAQSLE 720 (1068)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~--~~~~~~~~~~V~vIattn~~~ 720 (1068)
|++.+. ...........+.+.|+.++++-.- .........++++|+|+|--.
T Consensus 78 dKa~~~----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 78 DKAHPS----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGCSHT----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhcccc----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 999753 1112223444778888888886432 222245566899999998644
No 328
>PHA02244 ATPase-like protein
Probab=98.75 E-value=1.3e-07 Score=106.91 Aligned_cols=128 Identities=16% Similarity=0.266 Sum_probs=76.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc----cccccchhhHHHHHH-HHHHHHHhcCCeEEEEccch
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS----RLSLEKGPIIRQALS-NFISEALDHAPSIVIFDNLD 665 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s----~l~~~~~~~~~~~l~-~~f~~a~~~~PsILfIDEiD 665 (1068)
.++||+||||||||++|+++|..++ .+++.++.. .+.+.... ...+. ..+-.+. ..+.+|+|||++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg------~pfv~In~l~d~~~L~G~i~~--~g~~~dgpLl~A~-~~GgvLiLDEId 190 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALD------LDFYFMNAIMDEFELKGFIDA--NGKFHETPFYEAF-KKGGLFFIDEID 190 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecChHHHhhcccccc--cccccchHHHHHh-hcCCEEEEeCcC
Confidence 5699999999999999999999987 445555421 11110000 00111 1122222 356799999999
Q ss_pred hhhcCCCCCCCCCCchhHHHHHHHHHHHHHh-h-ccccCcccCCCcEEEEEecCCC-----------CCCChhhhcCCcc
Q 001491 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDE-Y-GEKRKSSCGIGPIAFVASAQSL-----------EKIPQSLTSSGRF 732 (1068)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~-~-~~~~~~~~~~~~V~vIattn~~-----------~~L~~aL~~~gRF 732 (1068)
.+.+ .....|...++. + ...+.......++.+|+|+|.. ..++++++. ||
T Consensus 191 ~a~p---------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF 253 (383)
T PHA02244 191 ASIP---------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF 253 (383)
T ss_pred cCCH---------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc
Confidence 8731 223334444432 1 1111111123468999999973 457899999 99
Q ss_pred cccccCCCCCHHH
Q 001491 733 DFHVQLPAPAASE 745 (1068)
Q Consensus 733 ~~~i~l~~P~~~e 745 (1068)
. ++++..|+..+
T Consensus 254 v-~I~~dyp~~~E 265 (383)
T PHA02244 254 A-PIEFDYDEKIE 265 (383)
T ss_pred E-EeeCCCCcHHH
Confidence 7 78999988433
No 329
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.75 E-value=2.6e-07 Score=103.45 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=60.3
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCC------------CCCCC
Q 001491 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKIP 723 (1068)
Q Consensus 656 PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~------------~~~L~ 723 (1068)
|+||||||+|+|- .....+|.+.++.-- .++ +|.+||+ |+.+|
T Consensus 279 pGVLFIDEvHmLD---------------iEcFsfLnralEs~~---------sPi-iIlATNRg~~~irGt~~~sphGiP 333 (398)
T PF06068_consen 279 PGVLFIDEVHMLD---------------IECFSFLNRALESEL---------SPI-IILATNRGITKIRGTDIISPHGIP 333 (398)
T ss_dssp E-EEEEESGGGSB---------------HHHHHHHHHHHTSTT-----------E-EEEEES-SEEE-BTTS-EEETT--
T ss_pred cceEEecchhhcc---------------HHHHHHHHHHhcCCC---------CcE-EEEecCceeeeccCccCcCCCCCC
Confidence 7899999999983 255667777766422 134 4555563 55678
Q ss_pred hhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCC
Q 001491 724 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1068)
Q Consensus 724 ~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s 777 (1068)
..|+. |+- .+...+++.++..+|++..++..++.++++++..++......+
T Consensus 334 ~DlLD--Rll-II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~S 384 (398)
T PF06068_consen 334 LDLLD--RLL-IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETS 384 (398)
T ss_dssp HHHHT--TEE-EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-
T ss_pred cchHh--hcE-EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhcc
Confidence 88887 665 6788999999999999999999999999999888776544333
No 330
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.74 E-value=9.4e-08 Score=93.56 Aligned_cols=76 Identities=30% Similarity=0.420 Sum_probs=55.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccch--------------hhHHHHHHHHHHHHHhcC
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG--------------PIIRQALSNFISEALDHA 655 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~--------------~~~~~~l~~~f~~a~~~~ 655 (1068)
+.+++|+||||||||++++.+|..+.... ..+++++++....... ......+...+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999987432 2477777766443211 122344556777777767
Q ss_pred CeEEEEccchhhh
Q 001491 656 PSIVIFDNLDSII 668 (1068)
Q Consensus 656 PsILfIDEiD~L~ 668 (1068)
+.++|+||++.+.
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 8999999999985
No 331
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=6.1e-08 Score=110.84 Aligned_cols=149 Identities=16% Similarity=0.195 Sum_probs=106.8
Q ss_pred CCCCCCc-hhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC----------------
Q 001491 842 GWDDVGG-LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1068)
Q Consensus 842 ~~~~i~g-l~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~---------------- 904 (1068)
.|+.+.| ++.+.+.+...+..- +.+..+||+||+|+|||++|+++|+.+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3666666 888888888876521 23456799999999999999999988622
Q ss_pred --------cEEEEecchhhhhhccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhc
Q 001491 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1068)
Q Consensus 905 --------~~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~L 972 (1068)
++..+... ++ ...-+.+|++.+.+. .+...|++|||+|.+ +....|.||+.|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 12222110 00 012245666665543 234569999999998 678899999999
Q ss_pred cCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHH
Q 001491 973 DGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV 1023 (1068)
Q Consensus 973 d~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~ 1023 (1068)
+ +..+++++|.+|+.++.|.|.++. |. ..++|.+|+.++..++++.
T Consensus 135 E--EPp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 E--EPSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred c--CCCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 8 456677777788888899999998 54 5689999999887776653
No 332
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.73 E-value=1.6e-07 Score=96.67 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=76.8
Q ss_pred cccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccccc
Q 001491 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1068)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1068)
++|.+..+.++++.++.+... +.+|||+|++||||+++|+++.+.. .....+|+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-------------~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~~~~ 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-------------DLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAALPEE 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-------------TS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS-HH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-------------CCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhhhhcc
Confidence 467888999999988776543 3679999999999999999998843 223378999999987532
Q ss_pred chhhHHHHHHHHHH---------------HHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--
Q 001491 636 KGPIIRQALSNFIS---------------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1068)
Q Consensus 636 ~~~~~~~~l~~~f~---------------~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1068)
.. -.++|. .......+.||||||+.|. . .+...|.+.++.-.
T Consensus 65 ~~------e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~-----------~----~~Q~~Ll~~l~~~~~~ 123 (168)
T PF00158_consen 65 LL------ESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP-----------P----ELQAKLLRVLEEGKFT 123 (168)
T ss_dssp HH------HHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS------------H----HHHHHHHHHHHHSEEE
T ss_pred hh------hhhhhccccccccccccccCCceeeccceEEeecchhhhH-----------H----HHHHHHHHHHhhchhc
Confidence 11 112222 1122345699999999984 2 34444555555321
Q ss_pred cccCcccCCCcEEEEEecCC
Q 001491 699 EKRKSSCGIGPIAFVASAQS 718 (1068)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~ 718 (1068)
..+.......++.+|++|+.
T Consensus 124 ~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 124 RLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccceEEeecCc
Confidence 11111111236899999885
No 333
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.73 E-value=3.9e-08 Score=112.88 Aligned_cols=139 Identities=22% Similarity=0.367 Sum_probs=101.1
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHc-----CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCC
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~-----g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~ 951 (1068)
....++|||+.|+|||+|++|+++.. ...++.+...++.+.++-+.-.+-.+-|++-. .-++|+||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34579999999999999999999887 44688888888887776654444445566555 456999999999965
Q ss_pred CCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC---CChhhcCCCCcce--EEEcCCCCHHHHHHHHHHHHH
Q 001491 952 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLDR--LLFCDFPSPRERLDILKVISR 1026 (1068)
Q Consensus 952 ~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~---ld~al~r~gRfd~--~i~~~~p~~~~r~~Il~~~l~ 1026 (1068)
+ ++...+|...+..+...++.+|+.+...|.. ++|.|.+ ||.. .+.+.+|+.+.|..|++...+
T Consensus 190 k---------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 K---------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred C---------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 4 2334555555555556666666644445554 5688887 8876 667899999999999999665
Q ss_pred hh
Q 001491 1027 KV 1028 (1068)
Q Consensus 1027 ~~ 1028 (1068)
.-
T Consensus 259 ~~ 260 (408)
T COG0593 259 DR 260 (408)
T ss_pred hc
Confidence 54
No 334
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.6e-08 Score=104.06 Aligned_cols=82 Identities=24% Similarity=0.345 Sum_probs=63.7
Q ss_pred eEEEEecCCccCCCCCCCCCCcch-HHHHHHHHhccCcc--------ccCcEEEEEeC----CCCCCCChhhcCCCCcce
Q 001491 939 CLLFFDEFDSIAPKRGHDNTGVTD-RVVNQFLTELDGVE--------VLTGVFVFAAT----SRPDLLDAALLRPGRLDR 1005 (1068)
Q Consensus 939 ~VLfiDEid~l~~~r~~~~~~~~~-~~~~~lL~~Ld~~~--------~~~~v~viatT----n~~d~ld~al~r~gRfd~ 1005 (1068)
.|+||||||+++.+.+.+..++.+ .+...||..++|-. ..+.+++||+. ..|.+|=|.|- |||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 599999999999887655534444 57788998887542 34578899885 46777777775 59999
Q ss_pred EEEcCCCCHHHHHHHHH
Q 001491 1006 LLFCDFPSPRERLDILK 1022 (1068)
Q Consensus 1006 ~i~~~~p~~~~r~~Il~ 1022 (1068)
.+++...+.++-.+|+.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888875
No 335
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.6e-07 Score=105.26 Aligned_cols=198 Identities=22% Similarity=0.310 Sum_probs=127.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccc--cchhhHHHHHHHHHHHHH----hcCCeEEEEccc
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL--EKGPIIRQALSNFISEAL----DHAPSIVIFDNL 664 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~--~~~~~~~~~l~~~f~~a~----~~~PsILfIDEi 664 (1068)
.+|||.||+|+|||.||+.||+.+. .++...||..|.. --+++++..+..++..|. ..+.+|+||||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC------CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 4699999999999999999999998 8899999999873 234567777777777763 346679999999
Q ss_pred hhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccC--------cccCCCcEEEEEecCC--------------
Q 001491 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRK--------SSCGIGPIAFVASAQS-------------- 718 (1068)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~--------~~~~~~~V~vIattn~-------------- 718 (1068)
|++......- +....-.-+.+.+.|+.++++-. .++. -..+..+|+||+..--
T Consensus 301 DKi~~~~~~i-~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~ 379 (564)
T KOG0745|consen 301 DKITKKAESI-HTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDK 379 (564)
T ss_pred hhhcccCccc-cccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcch
Confidence 9997321111 10001111355666666666421 1111 1122336777764321
Q ss_pred ------C------------CCCC------h---------hhhc-------CCcccccccCCCCCHHHHHHHHH-------
Q 001491 719 ------L------------EKIP------Q---------SLTS-------SGRFDFHVQLPAPAASERKAILE------- 751 (1068)
Q Consensus 719 ------~------------~~L~------~---------aL~~-------~gRF~~~i~l~~P~~~er~~IL~------- 751 (1068)
+ .... . .|.+ -|||...+.|...+.+++.+||.
T Consensus 380 slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~ 459 (564)
T KOG0745|consen 380 SLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALG 459 (564)
T ss_pred hcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHH
Confidence 0 0000 0 0111 15999889999999999998875
Q ss_pred ----HHHhh--ccccCCHHHHHHHhhcc--CCCCchhHHHHHHHHHHHHHhh
Q 001491 752 ----HEIQR--RSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGR 795 (1068)
Q Consensus 752 ----~~l~~--~~l~~~~~~l~~la~~t--~g~s~~DL~~Lv~~a~~~a~~r 795 (1068)
.++.. ..+.+++++++.+|+.. .+.-+|-|+.+++.+...+...
T Consensus 460 ~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 460 KQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 12222 23558899988888753 3444677889998888877654
No 336
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=6e-08 Score=109.75 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=110.9
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc----------EEEEec
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FISVKG 911 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~----------~i~v~~ 911 (1068)
.|+++.|++++++.+...+... +.+..+||+||.|+||+++|.++|+.+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999999987632 334689999999999999999999886221 111122
Q ss_pred chhh---------hh--------hcc--------ccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcch
Q 001491 912 PELL---------NK--------YIG--------ASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTD 962 (1068)
Q Consensus 912 ~el~---------~~--------~~g--------~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~ 962 (1068)
+++. ++ ..| -.-..+|++...+. .+...|++||++|.+ ..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 2221 00 000 01134566655543 245679999999998 67
Q ss_pred HHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHH
Q 001491 963 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVIS 1025 (1068)
Q Consensus 963 ~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l 1025 (1068)
...|.||+.|+... . .++|..|+.++.|-|.++. |. ..+.|++|+.++..++++...
T Consensus 139 ~aaNaLLK~LEEPp--~-~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 139 AAANALLKTLEEPG--N-GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred HHHHHHHHHHhCCC--C-CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhh
Confidence 88999999998543 3 3556677889999999998 55 568999999999988888664
No 337
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.71 E-value=1.6e-08 Score=115.87 Aligned_cols=140 Identities=23% Similarity=0.333 Sum_probs=86.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccc------ccchhhHHHHHHHHHHHHHh--cCC--eEE
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS------LEKGPIIRQALSNFISEALD--HAP--SIV 659 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~------~~~~~~~~~~l~~~f~~a~~--~~P--sIL 659 (1068)
.+++||.||||||||++|+.+|+.++ ..+..+.|..-. +.+.......-...+....+ ... .++
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~il 116 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVIL 116 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEE
Confidence 47899999999999999999999998 667777775432 22211111000000000000 011 399
Q ss_pred EEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCc---ccCCCcEEEEEecCC-----CCCCChhhhcCCc
Q 001491 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS---SCGIGPIAFVASAQS-----LEKIPQSLTSSGR 731 (1068)
Q Consensus 660 fIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~---~~~~~~V~vIattn~-----~~~L~~aL~~~gR 731 (1068)
++|||+...+ .+...|+..|++..-.... ..-..++++|+|.|+ ...+++++++ |
T Consensus 117 l~DEInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--R 179 (329)
T COG0714 117 LLDEINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--R 179 (329)
T ss_pred EEeccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--h
Confidence 9999988631 5566677777764321111 112346888899894 4568999999 9
Q ss_pred ccccccCCCC-CHHHHHHHHHH
Q 001491 732 FDFHVQLPAP-AASERKAILEH 752 (1068)
Q Consensus 732 F~~~i~l~~P-~~~er~~IL~~ 752 (1068)
|...++++.| +..+...++..
T Consensus 180 f~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 180 FLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred EEEEEecCCCCchHHHHHHHHh
Confidence 9778899999 44444444443
No 338
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2.6e-07 Score=104.61 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=114.4
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------e
Q 001491 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------L 620 (1068)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------~ 620 (1068)
|.+++|.+.+++.+.+.+.. ...+..+||+||+|+||+++|.++|+.+..... .
T Consensus 3 f~~iiGq~~~~~~L~~~i~~--------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQ--------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 66888999888887775522 122456999999999999999999999854320 0
Q ss_pred eeeEEEEeccccc-ccc---------------hhhH-HHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCCCCCC
Q 001491 621 VAHIVFVCCSRLS-LEK---------------GPII-RQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQP 679 (1068)
Q Consensus 621 ~~~~~~i~~s~l~-~~~---------------~~~~-~~~l~~~f~~a~----~~~PsILfIDEiD~L~~~~~~~~~~~~ 679 (1068)
...+..+.+.... +.. ...+ -..++++.+.+. .....|++||++|.+.
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 1112223221100 100 0000 112333333332 2345699999999984
Q ss_pred chhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccc
Q 001491 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (1068)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l 759 (1068)
..-.+.|+..+++.. . .++|..|+.++.+.+.++| |.. .++|++++.++..+++.........
T Consensus 138 ----~~aaNaLLK~LEEPp-~---------~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~ 200 (314)
T PRK07399 138 ----EAAANALLKTLEEPG-N---------GTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL 200 (314)
T ss_pred ----HHHHHHHHHHHhCCC-C---------CeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc
Confidence 134566777777754 2 3566677788999999999 655 7899999999999998875432111
Q ss_pred cCCHHHHHHHhhccCCCCchhHHHHH
Q 001491 760 ECSDEILLDVASKCDGYDAYDLEILV 785 (1068)
Q Consensus 760 ~~~~~~l~~la~~t~g~s~~DL~~Lv 785 (1068)
+.....++....| +++....++
T Consensus 201 ---~~~~~~l~~~a~G-s~~~al~~l 222 (314)
T PRK07399 201 ---NINFPELLALAQG-SPGAAIANI 222 (314)
T ss_pred ---hhHHHHHHHHcCC-CHHHHHHHH
Confidence 1224566666666 443333333
No 339
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.71 E-value=1.9e-08 Score=116.93 Aligned_cols=198 Identities=22% Similarity=0.234 Sum_probs=128.0
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh-
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK- 917 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~- 917 (1068)
...+++|.....+.+.+.+.... ....++|++|.+||||..+|+++-+.. +.+|+.+||+.+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 35567777776666666655321 233579999999999999999999887 569999998765432
Q ss_pred ----hcc----ccHHH---HHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-----ccC--
Q 001491 918 ----YIG----ASEQA---VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----VLT-- 979 (1068)
Q Consensus 918 ----~~g----~se~~---l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----~~~-- 979 (1068)
..| ++... -...|+.|.++ .||+|||..+ ...++..||..|+.-. +..
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCccc
Confidence 122 11111 12356666555 9999999998 6788899998886322 111
Q ss_pred --cEEEEEeCCCC--CC-----CChhhcCCCCcceEEEcCCCCHHHHH----HHHHHHHHhhccC-CCCCchhhHHHHHH
Q 001491 980 --GVFVFAATSRP--DL-----LDAALLRPGRLDRLLFCDFPSPRERL----DILKVISRKVCDT-SIPFSSLFCNELLI 1045 (1068)
Q Consensus 980 --~v~viatTn~~--d~-----ld~al~r~gRfd~~i~~~~p~~~~r~----~Il~~~l~~~~~~-~id~~~l~~~~~~~ 1045 (1068)
+|-||+|||+. +. +-+.|.- |+. ++.+..|...+|. .++++++++.... .... .-...+++.
T Consensus 274 ~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~-~~~s~~a~~ 349 (464)
T COG2204 274 KVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPP-KGFSPEALA 349 (464)
T ss_pred ceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCC-CCCCHHHHH
Confidence 48899999973 11 2222222 442 5777888877776 4555566555222 1111 122455555
Q ss_pred HHHhhhhhccccccccccccccC
Q 001491 1046 CKLWHFFMCVSLNLSSYIIFCFL 1068 (1068)
Q Consensus 1046 ~~l~~~~~~~~~~~~~~~~~~~~ 1068 (1068)
.-..+...+|..+|++++|++.+
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHh
Confidence 56667778888899999888753
No 340
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.70 E-value=1.3e-07 Score=109.77 Aligned_cols=134 Identities=17% Similarity=0.220 Sum_probs=76.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCce-eeeEEEEe----ccccc-cc---chh--hHHHHHHHHHHHHHh--cCC
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVC----CSRLS-LE---KGP--IIRQALSNFISEALD--HAP 656 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~-~~~~~~i~----~s~l~-~~---~~~--~~~~~l~~~f~~a~~--~~P 656 (1068)
.++++|+||||||||++|+.+|..+...... ....+.+. ..++. +- ..+ .....+.+++..|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 3679999999999999999999988532110 01111121 11221 11 001 011234455555554 357
Q ss_pred eEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh------------ccc-cCcccCCCcEEEEEecCCCC---
Q 001491 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY------------GEK-RKSSCGIGPIAFVASAQSLE--- 720 (1068)
Q Consensus 657 sILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~------------~~~-~~~~~~~~~V~vIattn~~~--- 720 (1068)
.+|||||+|..-. .++...+..+++.- ... .....-..++.+|||+|..+
T Consensus 274 ~vliIDEINRani--------------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 274 YVFIIDEINRANL--------------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred cEEEEehhhccCH--------------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 8999999988531 12222223333311 000 01233345899999999977
Q ss_pred -CCChhhhcCCcccccccCCC
Q 001491 721 -KIPQSLTSSGRFDFHVQLPA 740 (1068)
Q Consensus 721 -~L~~aL~~~gRF~~~i~l~~ 740 (1068)
.++.+|+| ||. .+++.+
T Consensus 340 ~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 340 AVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hhccHHHHh--hhh-eEEecC
Confidence 68999999 887 556654
No 341
>PRK09087 hypothetical protein; Validated
Probab=98.70 E-value=3.1e-08 Score=107.04 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=79.7
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT 958 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~ 958 (1068)
..++|+||+|||||||+++++...+..++ +..++.. +++..... .+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGS-----------DAANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcch-----------HHHHhhhc---CeEEEECCCCCCC-------
Confidence 35899999999999999999987665533 3222221 11122222 3799999997621
Q ss_pred CcchHHHHHHHHhccCccccCcEEEEEeCCCCCC---CChhhcCCCCcc--eEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 959 GVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL---LDAALLRPGRLD--RLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 959 ~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~---ld~al~r~gRfd--~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.. .+|...++.....+..+|++++..|.. ..+.++. ||. .++.+.+|+.++|..|++..++..
T Consensus 102 --~~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 102 --DE---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred --CH---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 12 234444444445555666655555543 4677877 775 688999999999999999998774
No 342
>PRK04132 replication factor C small subunit; Provisional
Probab=98.69 E-value=7.4e-08 Score=120.09 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=102.8
Q ss_pred ccceEEEEC--CCCCChhHHHHHHHHHc-----CCcEEEEecchhhhhhccccHHHHHHHHHHHhcC------CCeEEEE
Q 001491 877 LRSNVLLYG--PPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAA------APCLLFF 943 (1068)
Q Consensus 877 ~~~~lLL~G--ppGtGKT~lA~alA~~~-----g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~------~p~VLfi 943 (1068)
|+-+-+..| |.+.||||+|.++|+.+ +.+++++++++..+ -..+|++...+... +..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 345667778 99999999999999997 56899999987432 23566666554321 2469999
Q ss_pred ecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHH
Q 001491 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV 1023 (1068)
Q Consensus 944 DEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~ 1023 (1068)
||+|.+ +....+.|+..|+ .....+.+|++||.+..+.+++++ |+ ..+.|++|+.++....++.
T Consensus 637 DEaD~L-----------t~~AQnALLk~lE--ep~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADAL-----------TQDAQQALRRTME--MFSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccC-----------CHHHHHHHHHHhh--CCCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 999999 5678999999997 345678888899999999999998 65 5689999999999988888
Q ss_pred HHHh
Q 001491 1024 ISRK 1027 (1068)
Q Consensus 1024 ~l~~ 1027 (1068)
++++
T Consensus 701 I~~~ 704 (846)
T PRK04132 701 IAEN 704 (846)
T ss_pred HHHh
Confidence 8775
No 343
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.66 E-value=3.5e-08 Score=112.97 Aligned_cols=197 Identities=21% Similarity=0.232 Sum_probs=126.8
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecchhhh
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLN 916 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----g~~~i~v~~~el~~ 916 (1068)
....+++|....-+.+.+.+.. ++ +.+.++|++|++||||+.+|+++...+ +.+|+.+||+.+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~---~a--------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA---YA--------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh---hC--------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 4566777766666666666553 11 345689999999999999999998654 56899999988754
Q ss_pred h-------------hccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-----c-
Q 001491 917 K-------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----V- 977 (1068)
Q Consensus 917 ~-------------~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----~- 977 (1068)
. |.| ....-..+|+.|.++ +||+|||+.+ .......|++.||... .
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCC
Confidence 3 334 233445677777666 9999999999 5678889999998532 1
Q ss_pred ---cCcEEEEEeCCCC--CCCCh--hhcCCCCcceEEEcCCCCHHHH----HHHHHHHHHhhcc-CCCCCchhhHHHHHH
Q 001491 978 ---LTGVFVFAATSRP--DLLDA--ALLRPGRLDRLLFCDFPSPRER----LDILKVISRKVCD-TSIPFSSLFCNELLI 1045 (1068)
Q Consensus 978 ---~~~v~viatTn~~--d~ld~--al~r~gRfd~~i~~~~p~~~~r----~~Il~~~l~~~~~-~~id~~~l~~~~~~~ 1045 (1068)
...|.+|+||+.. +.+-. .|.+ .|+...| ..|+..+| ..+.+++++.... ...++.... .+++.
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I--~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~-~~a~~ 284 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTI--TLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDS-PEALR 284 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhh-hhcCcee--cCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCC-HHHHH
Confidence 2257778777742 11222 3333 1344444 45555444 4555566655522 234443333 55555
Q ss_pred HHHhhhhhcccccccccccccc
Q 001491 1046 CKLWHFFMCVSLNLSSYIIFCF 1067 (1068)
Q Consensus 1046 ~~l~~~~~~~~~~~~~~~~~~~ 1067 (1068)
.-+.-.+.+|-.+|.++++++.
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~ 306 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAV 306 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHH
Confidence 6666667888888888877754
No 344
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.66 E-value=2.4e-07 Score=114.76 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=83.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcc-----------CC------------------ceeeeEEEEecccccccchhh--
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEH-----------HK------------------DLVAHIVFVCCSRLSLEKGPI-- 639 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~-----------~~------------------~~~~~~~~i~~s~l~~~~~~~-- 639 (1068)
+++||.|++|||||++|+++++.+.. .. ....+++.+.++.....-+|.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 67999999999999999999998731 00 001234444333221111111
Q ss_pred HHHHHHH---HHH--HHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCcccCCCcE
Q 001491 640 IRQALSN---FIS--EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPI 710 (1068)
Q Consensus 640 ~~~~l~~---~f~--~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V 710 (1068)
+.+.+.. .+. .......++|||||++.+- ..+...|++.++.-. ..........++
T Consensus 106 ~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~---------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~ 170 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAEAHRGILYIDEVNLLD---------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARF 170 (633)
T ss_pred HHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------------HHHHHHHHHHHhcCCEEEEECCceeeecCCe
Confidence 1111100 000 0001133599999999984 144555666665321 111111112358
Q ss_pred EEEEecCCC-CCCChhhhcCCcccccccCCCCC-HHHHHHHHHH
Q 001491 711 AFVASAQSL-EKIPQSLTSSGRFDFHVQLPAPA-ASERKAILEH 752 (1068)
Q Consensus 711 ~vIattn~~-~~L~~aL~~~gRF~~~i~l~~P~-~~er~~IL~~ 752 (1068)
.+|+|+|.. ..++++|.. ||..++.++.+. .+++.+|++.
T Consensus 171 ~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 171 VLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred EEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 999999874 357888998 999888888774 5777777765
No 345
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.65 E-value=1.5e-07 Score=113.92 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=83.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEE---Eecccccccchhh-HHH--HHHHHHHHHHhcCCeEEEEcc
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF---VCCSRLSLEKGPI-IRQ--ALSNFISEALDHAPSIVIFDN 663 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~---i~~s~l~~~~~~~-~~~--~l~~~f~~a~~~~PsILfIDE 663 (1068)
..|+||+|+||||||++|+++++..... .+.. .++..+....... ... .++. ........++++|||
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~--G~l~~A~~Gil~iDE 308 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSAVGLTAAVTRDPETREFTLEG--GALVLADNGVCCIDE 308 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCcCCccccceEccCcceEEecC--ccEEecCCCEEEEec
Confidence 3489999999999999999999976421 1111 1222222110000 000 0000 000112356999999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc---cc-cCcccCCCcEEEEEecCCCC-------------CCChhh
Q 001491 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE-------------KIPQSL 726 (1068)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~V~vIattn~~~-------------~L~~aL 726 (1068)
+|.+-. .....|.+.|+.-. .+ +....-..++.+|||+|+.+ .+++++
T Consensus 309 i~~l~~---------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~l 373 (509)
T smart00350 309 FDKMDD---------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPI 373 (509)
T ss_pred hhhCCH---------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHH
Confidence 999831 33444555565321 11 11111123689999999863 488999
Q ss_pred hcCCcccccc-cCCCCCHHHHHHHHHHHHh
Q 001491 727 TSSGRFDFHV-QLPAPAASERKAILEHEIQ 755 (1068)
Q Consensus 727 ~~~gRF~~~i-~l~~P~~~er~~IL~~~l~ 755 (1068)
.+ ||+..+ -...|+.+...+|+++.+.
T Consensus 374 Ls--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 374 LS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred hC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99 998654 5578999999898887654
No 346
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.64 E-value=1.6e-06 Score=95.64 Aligned_cols=216 Identities=18% Similarity=0.231 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhcC-CCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCc---eeeeEEEEecccccc---
Q 001491 562 TASDVINRIKVLLS-PDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD---LVAHIVFVCCSRLSL--- 634 (1068)
Q Consensus 562 ~~~~i~~~l~~ll~-~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~---~~~~~~~i~~s~l~~--- 634 (1068)
...++.+.+..++. |. .....++||+|++|.|||++++.+++....... ...+++++.+..-.+
T Consensus 41 ~A~~~L~~L~~Ll~~P~---------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 41 RAKEALDRLEELLEYPK---------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred HHHHHHHHHHHHHhCCc---------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 34556666655443 22 222345999999999999999999986542221 123566665422111
Q ss_pred -------------cchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcccc
Q 001491 635 -------------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1068)
Q Consensus 635 -------------~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1068)
.......+.-..........++.+|+|||++.++. ++...++.+.+.|..+...+.-
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~NeL~i-- 181 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGNELQI-- 181 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhhccCC--
Confidence 00111222222333444556788999999999863 1233345666666555444321
Q ss_pred CcccCCCcEEEEEecCCCCCC--ChhhhcCCcccccccCCCCCH-HHHHHHHHHHHhhcccc----C-CHHHHHHHhhcc
Q 001491 702 KSSCGIGPIAFVASAQSLEKI--PQSLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSLE----C-SDEILLDVASKC 773 (1068)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~L--~~aL~~~gRF~~~i~l~~P~~-~er~~IL~~~l~~~~l~----~-~~~~l~~la~~t 773 (1068)
+++.+||......+ |+.+.+ ||. .+.+|.... ++...++..+-....+. + +.+....+-..+
T Consensus 182 -------piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s 251 (302)
T PF05621_consen 182 -------PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERS 251 (302)
T ss_pred -------CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHc
Confidence 35555554333322 567777 998 567776544 34455665544432221 2 344567888889
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhh
Q 001491 774 DGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQ 818 (1068)
Q Consensus 774 ~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~ 818 (1068)
+|..| ++..++..|+..|+.. +...++.+.+.+
T Consensus 252 ~G~iG-~l~~ll~~aA~~AI~s-----------G~E~It~~~l~~ 284 (302)
T PF05621_consen 252 EGLIG-ELSRLLNAAAIAAIRS-----------GEERITREILDK 284 (302)
T ss_pred CCchH-HHHHHHHHHHHHHHhc-----------CCceecHHHHhh
Confidence 98655 6778888888777654 224466666654
No 347
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.5e-07 Score=107.22 Aligned_cols=132 Identities=21% Similarity=0.268 Sum_probs=97.1
Q ss_pred cccceEEEECCCCCChhHHHHHHHHHcCCc-------------------------EEEEecchhh---------------
Q 001491 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------------------FISVKGPELL--------------- 915 (1068)
Q Consensus 876 ~~~~~lLL~GppGtGKT~lA~alA~~~g~~-------------------------~i~v~~~el~--------------- 915 (1068)
+.+..+||+||+|+||+++|+.+|+.+.+. +..+.....-
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 556789999999999999999999887332 1111110000
Q ss_pred ---hh----h-ccccHHHHHHHHHHHh----cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEE
Q 001491 916 ---NK----Y-IGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFV 983 (1068)
Q Consensus 916 ---~~----~-~g~se~~l~~lf~~a~----~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~v 983 (1068)
++ . -.-.-..+|++...+. .++..|++||++|.+ +....|.||+.|+ +...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE--EPPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCcCcEE
Confidence 00 0 0012245666665542 344569999999999 7789999999999 77788999
Q ss_pred EEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHH
Q 001491 984 FAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV 1023 (1068)
Q Consensus 984 iatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~ 1023 (1068)
|.+|++++.|.|.+++ |. ..|.|++|+.++..+.+..
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 9999999999999998 66 5689999999988877764
No 348
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.3e-07 Score=105.90 Aligned_cols=128 Identities=24% Similarity=0.314 Sum_probs=87.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCCc------------------eeeeEEEEecccccccchhhHHHHHHHHHHHHHh
Q 001491 592 HILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD 653 (1068)
Q Consensus 592 ~vLL~GppGtGKTtLaraLA~~L~~~~~------------------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~ 653 (1068)
.+||+||||+|||++|.++|+.+..... ....+..++.++..... .....++++.+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 4999999999999999999999873321 12457777777766542 122233333333322
Q ss_pred ----cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcC
Q 001491 654 ----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (1068)
Q Consensus 654 ----~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~ 729 (1068)
...-|++|||+|.+.. ...+.++..++.... +..+|.+||.+..+-+.+++
T Consensus 104 ~~~~~~~kviiidead~mt~---------------~A~nallk~lEep~~---------~~~~il~~n~~~~il~tI~S- 158 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE---------------DAANALLKTLEEPPK---------NTRFILITNDPSKILPTIRS- 158 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHhccCCC---------CeEEEEEcCChhhccchhhh-
Confidence 3346999999999952 345566677776553 47888899999999999999
Q ss_pred CcccccccCCCCCHHHHHH
Q 001491 730 GRFDFHVQLPAPAASERKA 748 (1068)
Q Consensus 730 gRF~~~i~l~~P~~~er~~ 748 (1068)
|.. .+.|++|+...+..
T Consensus 159 -Rc~-~i~f~~~~~~~~i~ 175 (325)
T COG0470 159 -RCQ-RIRFKPPSRLEAIA 175 (325)
T ss_pred -cce-eeecCCchHHHHHH
Confidence 554 67787765554443
No 349
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.63 E-value=8.8e-09 Score=114.19 Aligned_cols=150 Identities=22% Similarity=0.358 Sum_probs=85.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHh-------cCCeEEEEc
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-------HAPSIVIFD 662 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~-------~~PsILfID 662 (1068)
.+++||+||+|||||++++.+.+.+.... .....++++... ....+++.++..+....+ .+..|+|||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~---~~~~~~~~s~~T--ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDK---YLVITINFSAQT--TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCC---EEEEEEES-TTH--HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccc---cceeEeeccCCC--CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 47899999999999999998776654221 223345554422 112222222111111111 234499999
Q ss_pred cchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh---hccccCcccCCCcEEEEEecCCCC---CCChhhhcCCcccccc
Q 001491 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE---YGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDFHV 736 (1068)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~---~~~~~~~~~~~~~V~vIattn~~~---~L~~aL~~~gRF~~~i 736 (1068)
|++... .+..+.+ ...++|..+++. |...+..+..+.++.+||++++.. .+++.+.| .|. .+
T Consensus 108 DlN~p~---~d~ygtq------~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~ 175 (272)
T PF12775_consen 108 DLNMPQ---PDKYGTQ------PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-IL 175 (272)
T ss_dssp TTT-S------TTS--------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EE
T ss_pred ccCCCC---CCCCCCc------CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EE
Confidence 998875 3444433 344555565653 333344567778899999998743 35566665 554 67
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 001491 737 QLPAPAASERKAILEHEIQR 756 (1068)
Q Consensus 737 ~l~~P~~~er~~IL~~~l~~ 756 (1068)
.++.|+.+....|+..++..
T Consensus 176 ~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E----TCCHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhh
Confidence 99999999999999887764
No 350
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=3.1e-07 Score=105.00 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCce------------------eeeEEEEecccccccchhhHHHHHHHHHHH
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISE 650 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~------------------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~ 650 (1068)
.+..+||+||+|+|||++|+++|+.+...... ...+.++.... ..-..+.++..+..+...
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~-~~i~id~ir~l~~~~~~~ 105 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG-QSIKKDQIRYLKEEFSKS 105 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc-ccCCHHHHHHHHHHHhhC
Confidence 34568999999999999999999997533200 01122222211 011123333333222111
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCC
Q 001491 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1068)
Q Consensus 651 a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~g 730 (1068)
.......|++|||+|.+. ....+.|+..+++... .+.+|.+|+.++.+.+.+++
T Consensus 106 ~~~~~~kvviI~~a~~~~---------------~~a~NaLLK~LEEPp~---------~~~~Il~t~~~~~ll~TIrS-- 159 (329)
T PRK08058 106 GVESNKKVYIIEHADKMT---------------ASAANSLLKFLEEPSG---------GTTAILLTENKHQILPTILS-- 159 (329)
T ss_pred CcccCceEEEeehHhhhC---------------HHHHHHHHHHhcCCCC---------CceEEEEeCChHhCcHHHHh--
Confidence 112334599999999984 1345667777777543 36777788888899999999
Q ss_pred cccccccCCCCCHHHHHHHHHH
Q 001491 731 RFDFHVQLPAPAASERKAILEH 752 (1068)
Q Consensus 731 RF~~~i~l~~P~~~er~~IL~~ 752 (1068)
|.. .++|++|+.++..++++.
T Consensus 160 Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 160 RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hce-eeeCCCCCHHHHHHHHHH
Confidence 655 789999999988777753
No 351
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.62 E-value=1.4e-07 Score=114.14 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=102.0
Q ss_pred CCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEE----ecchhhhh---
Q 001491 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISV----KGPELLNK--- 917 (1068)
Q Consensus 845 ~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v----~~~el~~~--- 917 (1068)
.+.|++.++..+.-.+.-... ...-....++...|+||+|+||||||++|+++++.+....+.. ++..+...
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 456777777776554432110 0111112334445999999999999999999999875432221 11111110
Q ss_pred --hccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-----------ccCcEEEE
Q 001491 918 --YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVF 984 (1068)
Q Consensus 918 --~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----------~~~~v~vi 984 (1068)
..|...- -...+..| ...+++|||++.+ .+.....|+..|+.-. -..++.||
T Consensus 283 ~~~~g~~~~-~~G~l~~A---~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 283 DPETREFTL-EGGALVLA---DNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred ccCcceEEe-cCccEEec---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 0011000 00111122 2349999999998 5667788888885321 11368899
Q ss_pred EeCCCCC-------------CCChhhcCCCCcceEEEc-CCCCHHHHHHHHHHHHHh
Q 001491 985 AATSRPD-------------LLDAALLRPGRLDRLLFC-DFPSPRERLDILKVISRK 1027 (1068)
Q Consensus 985 atTn~~d-------------~ld~al~r~gRfd~~i~~-~~p~~~~r~~Il~~~l~~ 1027 (1068)
||+|..+ .|++++++ |||-.+.+ +.|+.+...+|.++++..
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 9999642 48999999 99986554 889999999999987753
No 352
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.62 E-value=2.1e-07 Score=95.34 Aligned_cols=134 Identities=23% Similarity=0.324 Sum_probs=90.7
Q ss_pred chhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC-----------------------
Q 001491 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL----------------------- 904 (1068)
Q Consensus 848 gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~----------------------- 904 (1068)
|++++.+.|...+..- +.+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 5677777777776531 33456899999999999999999988621
Q ss_pred cEEEEecchhhhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCc
Q 001491 905 RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG 980 (1068)
Q Consensus 905 ~~i~v~~~el~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~ 980 (1068)
++..++..+... .-.-+.++++...+.. ....|++|||+|.+ +..+.|.||+.|+ +...+
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LE--epp~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLE--EPPEN 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHH--STTTT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhc--CCCCC
Confidence 233333222100 1133667777766533 34679999999999 7899999999998 66688
Q ss_pred EEEEEeCCCCCCCChhhcCCCCcceEEEcCCC
Q 001491 981 VFVFAATSRPDLLDAALLRPGRLDRLLFCDFP 1012 (1068)
Q Consensus 981 v~viatTn~~d~ld~al~r~gRfd~~i~~~~p 1012 (1068)
+++|.+|+.++.|-|.++. |. ..|.|++.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 9999999999999999998 54 34666554
No 353
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.3e-07 Score=106.84 Aligned_cols=139 Identities=22% Similarity=0.341 Sum_probs=99.3
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCC-----cEEEEecchhhhhh---------------ccccHHH-HHHHHHHHh-c
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSL-----RFISVKGPELLNKY---------------IGASEQA-VRDIFSKAT-A 935 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~-----~~i~v~~~el~~~~---------------~g~se~~-l~~lf~~a~-~ 935 (1068)
+.++++||+||||||..++.+++++.. .++++|+....+.| .|.+... ...+++... .
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 346999999999999999999998833 38889986654332 2233222 233333332 2
Q ss_pred CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCC---CCChhhcCCCCc-ceEEEcCC
Q 001491 936 AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD---LLDAALLRPGRL-DRLLFCDF 1011 (1068)
Q Consensus 936 ~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d---~ld~al~r~gRf-d~~i~~~~ 1011 (1068)
...-|+++||+|.+..+.+ .++..|+...+.. ..++.+|+.+|..+ .+|+-+.+ || ...|.|++
T Consensus 122 ~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~p 189 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPP 189 (366)
T ss_pred CCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCC
Confidence 4566999999999975432 5667777666543 56788999999874 47888876 54 34589999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 001491 1012 PSPRERLDILKVISRKV 1028 (1068)
Q Consensus 1012 p~~~~r~~Il~~~l~~~ 1028 (1068)
++.+|..+|++.-.+.-
T Consensus 190 Y~a~el~~Il~~R~~~~ 206 (366)
T COG1474 190 YTAEELYDILRERVEEG 206 (366)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999888754
No 354
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=1.1e-06 Score=100.21 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=105.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------------eeeeEEEEecccc-cccchhhHHHHHHHHHH
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRL-SLEKGPIIRQALSNFIS 649 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------------~~~~~~~i~~s~l-~~~~~~~~~~~l~~~f~ 649 (1068)
.+..+||+||+|+||+++|+++|+.+-.... ....+.++....- ..-..+.++...+.+..
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 3467999999999999999999999854210 0112333332211 11234555555544444
Q ss_pred HHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcC
Q 001491 650 EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (1068)
Q Consensus 650 ~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~ 729 (1068)
........|++||++|.+. ..-.+.|+..+++-.. +.++|..|+.++.+.+.++|
T Consensus 103 ~~~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLEEPp~---------~t~fiL~t~~~~~lLpTIrS- 157 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLT---------------DAAANALLKTLEEPPE---------NTWFFLACREPARLLATLRS- 157 (334)
T ss_pred ccccCCceEEEEcchHhhC---------------HHHHHHHHHHhcCCCC---------CeEEEEEECChhhChHHHHh-
Confidence 4444455699999999985 2456677778887543 47888889999999999999
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCC
Q 001491 730 GRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1068)
Q Consensus 730 gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s 777 (1068)
|.. .+.|++|+.++..+.+... ..++++....++..+.|-.
T Consensus 158 -RCq-~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~ 198 (334)
T PRK07993 158 -RCR-LHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAP 198 (334)
T ss_pred -ccc-cccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCH
Confidence 666 6799999998877766532 1245555666677777643
No 355
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.61 E-value=7.9e-08 Score=109.71 Aligned_cols=172 Identities=20% Similarity=0.215 Sum_probs=102.3
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhh-----ccccH-------HHHHHHHHHHhcCCCeEEE
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASE-------QAVRDIFSKATAAAPCLLF 942 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~-----~g~se-------~~l~~lf~~a~~~~p~VLf 942 (1068)
..++||+|++||||+++|+++-... +.+|+.+++..+.... .|... ..-...|..|. ..+||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 4579999999999999999998766 4789999987653211 11110 01122345443 34999
Q ss_pred EecCCccCCCCCCCCCCcchHHHHHHHHhccCccc---------cCcEEEEEeCCCC-------CCCChhhcCCCCcceE
Q 001491 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATSRP-------DLLDAALLRPGRLDRL 1006 (1068)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~---------~~~v~viatTn~~-------d~ld~al~r~gRfd~~ 1006 (1068)
|||++.+ ...+...|+..|+.-.. ..++.+|+||+.. ..+.+.|.. ||..
T Consensus 99 Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~- 164 (329)
T TIGR02974 99 LDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAF- 164 (329)
T ss_pred eCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhcc-
Confidence 9999998 67788888888864221 1347888888753 234556665 6643
Q ss_pred EEcCCCCHHHHHH----HHHHHHHhhccC-CCCCchhhHHHHHHHHHhhhhhccccccccccccc
Q 001491 1007 LFCDFPSPRERLD----ILKVISRKVCDT-SIPFSSLFCNELLICKLWHFFMCVSLNLSSYIIFC 1066 (1068)
Q Consensus 1007 i~~~~p~~~~r~~----Il~~~l~~~~~~-~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1066 (1068)
+.+..|...+|.+ +++.++.+...+ .....--...++...-..+...+|..+|.++++.+
T Consensus 165 ~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~ 229 (329)
T TIGR02974 165 DVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERS 229 (329)
T ss_pred hhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 4556666666654 444545443211 11110012333333444444567777777766544
No 356
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.60 E-value=1.2e-06 Score=104.05 Aligned_cols=232 Identities=19% Similarity=0.218 Sum_probs=138.0
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhcc----CCceeeeEEEEecc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH----HKDLVAHIVFVCCS 630 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~----~~~~~~~~~~i~~s 630 (1068)
.|-+.+..+++|-..+..++... ..+..+.+.|-||||||..++.+.+.|.. .......++.+|.-
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~----------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm 466 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ----------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL 466 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC----------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce
Confidence 45567888888888887766531 11236999999999999999999998762 22223445555554
Q ss_pred cccccc---hh-------------hHHHHHHHHHHHH-HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001491 631 RLSLEK---GP-------------IIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1068)
Q Consensus 631 ~l~~~~---~~-------------~~~~~l~~~f~~a-~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1068)
.+.+.. .. ..-..+...|... ....++||+|||+|.|+. +-...|.++
T Consensus 467 ~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvt---------------r~QdVlYn~ 531 (767)
T KOG1514|consen 467 RLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVT---------------RSQDVLYNI 531 (767)
T ss_pred eecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhc---------------ccHHHHHHH
Confidence 443210 00 0011222233211 224578999999999983 112345555
Q ss_pred HHhhccccCcccCCCcEEEEEecCCCCCCChhhhc---CCccc-ccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHH
Q 001491 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS---SGRFD-FHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1068)
Q Consensus 694 ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~---~gRF~-~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~l 769 (1068)
++...... .+++||+.+|..+. +..+.. ..|.+ ..+.|.+++.+|+++|+...+... ..+..++.+.+
T Consensus 532 fdWpt~~~------sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielv 603 (767)
T KOG1514|consen 532 FDWPTLKN------SKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELV 603 (767)
T ss_pred hcCCcCCC------CceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHH
Confidence 55543322 14788888887543 333322 11444 258999999999999999888764 34566666666
Q ss_pred hhccCCCCc--hhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhccc
Q 001491 770 ASKCDGYDA--YDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1068)
Q Consensus 770 a~~t~g~s~--~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~ 823 (1068)
|+.-...+| +-...+|++|...|-.+.... .......++..++.+|+.++
T Consensus 604 arkVAavSGDaRraldic~RA~Eia~~~~~~~----k~~~~q~v~~~~v~~Ai~em 655 (767)
T KOG1514|consen 604 ARKVAAVSGDARRALDICRRAAEIAEERNVKG----KLAVSQLVGILHVMEAINEM 655 (767)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhhhcccc----cccccceeehHHHHHHHHHH
Confidence 665444333 445567888887776554311 11122446666777766654
No 357
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.60 E-value=8e-09 Score=99.37 Aligned_cols=114 Identities=23% Similarity=0.289 Sum_probs=58.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc------cccccchhhHHHHHHHHHHHHHhcC---CeEEEEc
Q 001491 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------RLSLEKGPIIRQALSNFISEALDHA---PSIVIFD 662 (1068)
Q Consensus 592 ~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s------~l~~~~~~~~~~~l~~~f~~a~~~~---PsILfID 662 (1068)
|+||.|+||+|||++|+++|+.++ ..+..+.+. ++.+...-..+. ..|. .... ..|+++|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~--~~~GPif~~ill~D 69 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------LSFKRIQFTPDLLPSDILGFPVYDQET---GEFE--FRPGPIFTNILLAD 69 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT--HHHHHEEEEEETTT---TEEE--EEE-TT-SSEEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------CceeEEEecCCCCcccceeeeeeccCC---CeeE--eecChhhhceeeec
Confidence 699999999999999999999988 344444432 222211111000 0000 0011 2499999
Q ss_pred cchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccc-cC-cccCCCcEEEEEecCCCC-----CCChhhhcCCccc
Q 001491 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-RK-SSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFD 733 (1068)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-~~-~~~~~~~V~vIattn~~~-----~L~~aL~~~gRF~ 733 (1068)
||+...+ +....|++.|.+..-. .. ...-..++.||||.|+.+ .++.++.. ||-
T Consensus 70 EiNrapp---------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 70 EINRAPP---------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp TGGGS-H---------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ccccCCH---------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 9988742 5566677777764321 11 111123589999999876 47788777 763
No 358
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.60 E-value=1.1e-07 Score=103.45 Aligned_cols=181 Identities=18% Similarity=0.199 Sum_probs=118.5
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.++++.++....+.+.. . .+.-.|+|+|||||+|||+...+.|+.+.........+...+.
T Consensus 37 P~~l~dv~~~~ei~st~~~~~----~-----------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYS----G-----------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CchhhhHhcCCchhhHHHHhc----c-----------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 444566677766666655531 1 1111389999999999999999999998753322222333444
Q ss_pred ccccccchhhHHHHHHHHHHHHHh-------cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccC
Q 001491 630 SRLSLEKGPIIRQALSNFISEALD-------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~-------~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (1068)
++-.+- +..++.+ ..|..++. ..+.++++||.|.+.. ...+.|.+..+.+..
T Consensus 102 Sd~rgi--d~vr~qi-~~fast~~~~~fst~~~fKlvILDEADaMT~---------------~AQnALRRviek~t~--- 160 (360)
T KOG0990|consen 102 SDDRGI--DPVRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAMTR---------------DAQNALRRVIEKYTA--- 160 (360)
T ss_pred cCccCC--cchHHHH-HHHHhhccceeccccCceeEEEecchhHhhH---------------HHHHHHHHHHHHhcc---
Confidence 443322 2222222 22333332 2567999999999852 334445556666653
Q ss_pred cccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCC
Q 001491 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1068)
Q Consensus 703 ~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g 775 (1068)
++.|...+|++..+.+++++ ||. .+.+.+.+..+....+.+.+.......+++....++...-|
T Consensus 161 ------n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g 224 (360)
T KOG0990|consen 161 ------NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG 224 (360)
T ss_pred ------ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH
Confidence 36777889999999999999 777 67788888888888888888877777777776666655444
No 359
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.59 E-value=4.1e-07 Score=111.46 Aligned_cols=142 Identities=23% Similarity=0.249 Sum_probs=86.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHH---------HhcCCeEEE
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA---------LDHAPSIVI 660 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a---------~~~~PsILf 660 (1068)
-+||||.|+||||||++|+++++.+... ..|+.+.+......-.|.+. +...+... .....++||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 3789999999999999999999987531 23454543221111112110 01101101 012235999
Q ss_pred EccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc---cc-cCcccCCCcEEEEEecCCCC---CCChhhhcCCccc
Q 001491 661 FDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD 733 (1068)
Q Consensus 661 IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~V~vIattn~~~---~L~~aL~~~gRF~ 733 (1068)
+||++.+-+ .+...|.+.|+.-. .. +.......++.+|+|+|..+ .+++.|.. ||.
T Consensus 90 lDEi~rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~ 152 (589)
T TIGR02031 90 VDMANLLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLA 152 (589)
T ss_pred ccchhhCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hcc
Confidence 999999841 45556666665422 10 11111123589999999865 68889998 999
Q ss_pred ccccCC-CCCHHHHHHHHHHHH
Q 001491 734 FHVQLP-APAASERKAILEHEI 754 (1068)
Q Consensus 734 ~~i~l~-~P~~~er~~IL~~~l 754 (1068)
.++.+. .|+.++|.+|++..+
T Consensus 153 l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 153 LHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CeeecCCCCCHHHHHHHHHHHH
Confidence 877665 456777888887654
No 360
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.5e-06 Score=98.39 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=93.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCce------------------eeeEEEEecccccccchhhHHHHHHHHHHHH
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA 651 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~------------------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a 651 (1068)
+..+||+||+|+||+++|+++|+.+...... ...+.++....-..-..+.++...+.+....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 4669999999999999999999998643210 1123333322111123445554444433333
Q ss_pred HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCc
Q 001491 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1068)
Q Consensus 652 ~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gR 731 (1068)
......|++||++|.+. ..-.+.|+..+++-.. .+++|.+|+.++.+.+.++| |
T Consensus 104 ~~g~~KV~iI~~a~~m~---------------~~AaNaLLKtLEEPp~---------~~~fiL~t~~~~~llpTI~S--R 157 (325)
T PRK06871 104 QQGGNKVVYIQGAERLT---------------EAAANALLKTLEEPRP---------NTYFLLQADLSAALLPTIYS--R 157 (325)
T ss_pred ccCCceEEEEechhhhC---------------HHHHHHHHHHhcCCCC---------CeEEEEEECChHhCchHHHh--h
Confidence 33445699999999984 2446667777777543 47888899999999999999 6
Q ss_pred ccccccCCCCCHHHHHHHHHHH
Q 001491 732 FDFHVQLPAPAASERKAILEHE 753 (1068)
Q Consensus 732 F~~~i~l~~P~~~er~~IL~~~ 753 (1068)
.. .+.|++|+.++..+.|...
T Consensus 158 C~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 158 CQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred ce-EEeCCCCCHHHHHHHHHHH
Confidence 55 7899999999887777653
No 361
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.59 E-value=3.9e-07 Score=93.39 Aligned_cols=125 Identities=23% Similarity=0.320 Sum_probs=79.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCce-----------------eeeEEEEeccccc-ccchhhHHHHHHHHHHH
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-----------------VAHIVFVCCSRLS-LEKGPIIRQALSNFISE 650 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~-----------------~~~~~~i~~s~l~-~~~~~~~~~~l~~~f~~ 650 (1068)
.|..+||+||+|+||+++|+++|+.+...... ...+..++..... .-..+.++.....+...
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 34669999999999999999999988643321 2345555444331 12334444332222222
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCC
Q 001491 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1068)
Q Consensus 651 a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~g 730 (1068)
.......|++|||+|.+. ....+.|+..+++... ++.+|.+|+.++.+.+.++|
T Consensus 98 ~~~~~~KviiI~~ad~l~---------------~~a~NaLLK~LEepp~---------~~~fiL~t~~~~~il~TI~S-- 151 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLT---------------EEAQNALLKTLEEPPE---------NTYFILITNNPSKILPTIRS-- 151 (162)
T ss_dssp -TTSSSEEEEEETGGGS----------------HHHHHHHHHHHHSTTT---------TEEEEEEES-GGGS-HHHHT--
T ss_pred HhcCCceEEEeehHhhhh---------------HHHHHHHHHHhcCCCC---------CEEEEEEECChHHChHHHHh--
Confidence 222345699999999985 2567778888888764 48899999999999999999
Q ss_pred cccccccCCC
Q 001491 731 RFDFHVQLPA 740 (1068)
Q Consensus 731 RF~~~i~l~~ 740 (1068)
|.. .+.+++
T Consensus 152 Rc~-~i~~~~ 160 (162)
T PF13177_consen 152 RCQ-VIRFRP 160 (162)
T ss_dssp TSE-EEEE--
T ss_pred hce-EEecCC
Confidence 654 455554
No 362
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.58 E-value=1.8e-07 Score=106.93 Aligned_cols=196 Identities=21% Similarity=0.225 Sum_probs=113.3
Q ss_pred CCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh--
Q 001491 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-- 917 (1068)
Q Consensus 843 ~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~-- 917 (1068)
++++.|.....+.+.+.+.... +...++|++|++||||+++|+++-... +.+|+.++|..+-..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3456666666666655554321 234579999999999999999998766 468999998775321
Q ss_pred ---hccccH-------HHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--cc-------
Q 001491 918 ---YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL------- 978 (1068)
Q Consensus 918 ---~~g~se-------~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--~~------- 978 (1068)
+.|... ......|..|. ...|||||++.+ ...+...|+..|+... ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 112110 00122344443 348999999998 5677888888875422 11
Q ss_pred CcEEEEEeCCCC-------CCCChhhcCCCCcceEEEcCCCCHHHH----HHHHHHHHHhhccC-CCCCchhhHHHHHHH
Q 001491 979 TGVFVFAATSRP-------DLLDAALLRPGRLDRLLFCDFPSPRER----LDILKVISRKVCDT-SIPFSSLFCNELLIC 1046 (1068)
Q Consensus 979 ~~v~viatTn~~-------d~ld~al~r~gRfd~~i~~~~p~~~~r----~~Il~~~l~~~~~~-~id~~~l~~~~~~~~ 1046 (1068)
..+.||+||+.. ..+.+.|.. ||.. +.+..|...+| ..+++.++++.... ......-...+++..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLAF-DVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcCC-CEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 147788888763 235566666 7743 34445555555 44555555554211 111000123444444
Q ss_pred HHhhhhhccccccccccccc
Q 001491 1047 KLWHFFMCVSLNLSSYIIFC 1066 (1068)
Q Consensus 1047 ~l~~~~~~~~~~~~~~~~~~ 1066 (1068)
-..+...+|..+|.++++.+
T Consensus 217 L~~y~WPGNvrEL~~vl~~a 236 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERS 236 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHH
Confidence 44455556666666655543
No 363
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.57 E-value=3.5e-07 Score=111.70 Aligned_cols=197 Identities=21% Similarity=0.196 Sum_probs=118.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~ 917 (1068)
..++.+.|.....+.+.+.+.... +...++||+|++||||+++|+++.... +.+|+.+++..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 356677887776666666655332 234579999999999999999999886 579999999765322
Q ss_pred h-----ccccHH-------HHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--cc-----
Q 001491 918 Y-----IGASEQ-------AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL----- 978 (1068)
Q Consensus 918 ~-----~g~se~-------~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--~~----- 978 (1068)
. .|.... .....|..| ...+|||||++.+ .......|+..|+.-. ..
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCCce
Confidence 1 111100 001123333 2349999999998 5678888888886422 11
Q ss_pred --CcEEEEEeCCCC-------CCCChhhcCCCCcce-EEEcCCCC--HHHHHHHHHHHHHhhcc-CCCCCchhhHHHHHH
Q 001491 979 --TGVFVFAATSRP-------DLLDAALLRPGRLDR-LLFCDFPS--PRERLDILKVISRKVCD-TSIPFSSLFCNELLI 1045 (1068)
Q Consensus 979 --~~v~viatTn~~-------d~ld~al~r~gRfd~-~i~~~~p~--~~~r~~Il~~~l~~~~~-~~id~~~l~~~~~~~ 1045 (1068)
-++.+|+||+.. ..+.+.|.. ||+. .|.+++.. .++...|++.++++... .... ....+.+.
T Consensus 328 ~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~---~~~s~~a~ 402 (534)
T TIGR01817 328 LKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRP---LTITPSAI 402 (534)
T ss_pred EeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCC---CCCCHHHH
Confidence 147788888753 123334443 4432 34444443 24455667777766522 1111 22334444
Q ss_pred HHHhh-hhhcccccccccccccc
Q 001491 1046 CKLWH-FFMCVSLNLSSYIIFCF 1067 (1068)
Q Consensus 1046 ~~l~~-~~~~~~~~~~~~~~~~~ 1067 (1068)
..|.+ ...+|..+|.++++.++
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~ 425 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTA 425 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHH
Confidence 44444 45777788888777654
No 364
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=7.9e-07 Score=97.10 Aligned_cols=113 Identities=21% Similarity=0.318 Sum_probs=74.2
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-cccCcccCCCcEEEEEecC----CCCCCChhhhcCC
Q 001491 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASAQ----SLEKIPQSLTSSG 730 (1068)
Q Consensus 656 PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-~~~~~~~~~~~V~vIattn----~~~~L~~aL~~~g 730 (1068)
-+|+||||||.++....... +.-..+.+.+-|+.++++.. .+..+......++|||+.- .|.+|-|.|..
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~---~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG-- 325 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGG---PDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG-- 325 (444)
T ss_pred cCeEEEehhhHHHhcCCCCC---CCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--
Confidence 45999999999985333111 12223456666777776543 2223344445789998753 47777788877
Q ss_pred cccccccCCCCCHHHHHHHHHH-----------HHhh--ccccCCHHHHHHHhhcc
Q 001491 731 RFDFHVQLPAPAASERKAILEH-----------EIQR--RSLECSDEILLDVASKC 773 (1068)
Q Consensus 731 RF~~~i~l~~P~~~er~~IL~~-----------~l~~--~~l~~~~~~l~~la~~t 773 (1068)
||...+++...+.++...||.. ++.. ..+.++++.+..+|...
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 9999999999999999988751 1222 23457788777776654
No 365
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.56 E-value=3.9e-07 Score=108.97 Aligned_cols=200 Identities=15% Similarity=0.161 Sum_probs=118.3
Q ss_pred cccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccc
Q 001491 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1068)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~ 633 (1068)
..+.|....++.+.+.+..+... ..+++|+|++||||+++|+++...... ...+++.++|..+.
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~v~v~c~~~~ 202 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPS-------------DITVLLLGESGTGKEVLARALHQLSDR---KDKRFVAINCAAIP 202 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCcCHHHHHHHHHHhCCc---CCCCeEEEECCCCC
Confidence 34666777778777766554332 256999999999999999999886432 22678899999874
Q ss_pred ccchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc
Q 001491 634 LEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1068)
Q Consensus 634 ~~~~~~~~~~l~~~f~~---------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1068)
.... .. .+|.. ......+.|||||++.+. ...+..+.+++.+.. +.
T Consensus 203 ~~~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~--~~ 263 (445)
T TIGR02915 203 ENLL---ES---ELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP-----------LNLQAKLLRFLQERV--IE 263 (445)
T ss_pred hHHH---HH---HhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC-----------HHHHHHHHHHHhhCe--EE
Confidence 3211 11 11211 111345789999999983 233334444333211 11
Q ss_pred cccCcccCCCcEEEEEecCCC-------CCCChhhhcCCcccccccCCCCCHHHHH----HHHHHHHhh----cc---cc
Q 001491 699 EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFDFHVQLPAPAASERK----AILEHEIQR----RS---LE 760 (1068)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~-------~~L~~aL~~~gRF~~~i~l~~P~~~er~----~IL~~~l~~----~~---l~ 760 (1068)
..+.......++.+|++++.. ..+.+.|.. |+. .+.+..|...+|. .++++++.. .+ ..
T Consensus 264 ~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (445)
T TIGR02915 264 RLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKG 340 (445)
T ss_pred eCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 000000111257888888763 233444433 333 2334444444443 344444432 22 35
Q ss_pred CCHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001491 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 761 ~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
++++.+..+..+..-.+.++|++++++++..
T Consensus 341 ~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 341 FTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 8899999999888777889999999998854
No 366
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.56 E-value=1.3e-07 Score=113.68 Aligned_cols=197 Identities=22% Similarity=0.240 Sum_probs=114.7
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHH-----------cCCcEEEE
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA-----------CSLRFISV 909 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~-----------~g~~~i~v 909 (1068)
..++++.|.....+.+.+.+.... +...++|++|++||||+.+|+++-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 356778888777777766655321 23357999999999999999999887 36799999
Q ss_pred ecchhhhh-----hccccH--------HHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc
Q 001491 910 KGPELLNK-----YIGASE--------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE 976 (1068)
Q Consensus 910 ~~~el~~~-----~~g~se--------~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~ 976 (1068)
+|..+... ..|..+ ..-..+|+.|.++ .|||||++.+ .......|+..|+.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 98765322 122111 1112356655444 8999999998 6778888888886422
Q ss_pred -----cc----CcEEEEEeCCCCC--C-----CChhhcCCCCcceEEEcCCCCHHHHHH----HHHHHHHhhcc-CCCCC
Q 001491 977 -----VL----TGVFVFAATSRPD--L-----LDAALLRPGRLDRLLFCDFPSPRERLD----ILKVISRKVCD-TSIPF 1035 (1068)
Q Consensus 977 -----~~----~~v~viatTn~~d--~-----ld~al~r~gRfd~~i~~~~p~~~~r~~----Il~~~l~~~~~-~~id~ 1035 (1068)
.. -++-+|+|||..- . +.+.|.. |+. .+.+..|...+|.+ +++.++++... ....+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 11 1357888887631 1 1222222 332 35666777666654 44555555311 12334
Q ss_pred chhh--H-HHHHHHHHhhhhhcccccccccccc
Q 001491 1036 SSLF--C-NELLICKLWHFFMCVSLNLSSYIIF 1065 (1068)
Q Consensus 1036 ~~l~--~-~~~~~~~l~~~~~~~~~~~~~~~~~ 1065 (1068)
+.-. . .++...-..+...+|..+|.++++-
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier 460 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMER 460 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3211 1 1111222333345566666666553
No 367
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.2e-06 Score=106.87 Aligned_cols=202 Identities=15% Similarity=0.180 Sum_probs=108.5
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
..+.++.|.+..++++...+...... ..+.+.++|+||||||||++++.+|+.++...... .-.++|.
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~----------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew--~npv~~~ 148 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLE----------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW--SNPTLPD 148 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccc----------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH--hhhhhhc
Confidence 34677888888888877766443221 22334599999999999999999999886321100 0011111
Q ss_pred cccc------------cchhhHHHHHHHHHHHHH----------hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHH
Q 001491 631 RLSL------------EKGPIIRQALSNFISEAL----------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1068)
Q Consensus 631 ~l~~------------~~~~~~~~~l~~~f~~a~----------~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1068)
.... ..+....+.+..++..+. .....||||||++.++. + ... .+..
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~-r-------~~~---~lq~ 217 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY-R-------DTR---ALHE 217 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-h-------hHH---HHHH
Confidence 1100 001112233444444443 13456999999998762 0 011 1222
Q ss_pred HHHHHHHhhccccCcccCCCcEEEEEecCCC------C-C------CChhhhcCCcccccccCCCCCHHHHHHHHHHHHh
Q 001491 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSL------E-K------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 755 (1068)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~V~vIattn~~------~-~------L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~ 755 (1068)
.|. . .+.... . .++++|.+-+.. + . +.+++++..|.. +|.|++.+..+..+.|+..+.
T Consensus 218 lLr-~--~~~e~~--~---~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 218 ILR-W--KYVSIG--R---CPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred HHH-H--HhhcCC--C---ceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHH
Confidence 222 0 111111 0 123333332211 0 0 235666544544 689999999998888887776
Q ss_pred hcccc------C-CHHHHHHHhhccCCCCchhHHHHHHHH
Q 001491 756 RRSLE------C-SDEILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 756 ~~~l~------~-~~~~l~~la~~t~g~s~~DL~~Lv~~a 788 (1068)
..+.. + +++.+..++....| |++..+...
T Consensus 289 ~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~L 324 (637)
T TIGR00602 289 IEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSL 324 (637)
T ss_pred hhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHH
Confidence 54221 2 35678888776555 665555433
No 368
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.55 E-value=3.3e-07 Score=115.16 Aligned_cols=194 Identities=23% Similarity=0.259 Sum_probs=119.3
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh-
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK- 917 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~- 917 (1068)
.+.++.|.....+.+.+.++... ....++|++|++|||||++|+++.... +.+|+.+++..+...
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 45677887777777766665422 223579999999999999999998865 678999998765321
Q ss_pred ----hccc--------cHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--c------
Q 001491 918 ----YIGA--------SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V------ 977 (1068)
Q Consensus 918 ----~~g~--------se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--~------ 977 (1068)
..|. ... ....|..|. ..+|||||++.+ ...+...|+..|+... .
T Consensus 443 ~~~~lfg~~~~~~~g~~~~-~~g~le~a~---~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQ-RIGRFELAD---KSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred hhhhhcCcccccccccccc-hhhHHHhcC---CCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 1121 111 123444443 349999999998 5678888888886422 1
Q ss_pred -cCcEEEEEeCCCCC-------CCChhhcCCCCcceEEEcCCCCHHHHHH----HHHHHHHhhcc---CCCCCchhhHHH
Q 001491 978 -LTGVFVFAATSRPD-------LLDAALLRPGRLDRLLFCDFPSPRERLD----ILKVISRKVCD---TSIPFSSLFCNE 1042 (1068)
Q Consensus 978 -~~~v~viatTn~~d-------~ld~al~r~gRfd~~i~~~~p~~~~r~~----Il~~~l~~~~~---~~id~~~l~~~~ 1042 (1068)
..++-+|+||+..- .+.+.|.. |+. .+.+..|...+|.+ +++.++++... ..+. -...+
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~---~~s~~ 581 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNID---SIPAE 581 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCC---CcCHH
Confidence 13577888887641 12333333 443 34566777666654 45555555422 2221 12344
Q ss_pred HHHHHHhhhhhcccccccccccccc
Q 001491 1043 LLICKLWHFFMCVSLNLSSYIIFCF 1067 (1068)
Q Consensus 1043 ~~~~~l~~~~~~~~~~~~~~~~~~~ 1067 (1068)
++..-..+...+|..+|.++++.++
T Consensus 582 al~~L~~y~WPGNvrEL~~~i~~a~ 606 (686)
T PRK15429 582 TLRTLSNMEWPGNVRELENVIERAV 606 (686)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 4444445566777777777776553
No 369
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.55 E-value=1.1e-07 Score=116.42 Aligned_cols=134 Identities=20% Similarity=0.238 Sum_probs=94.8
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCC--cEEEEecchhhhhhccccH--HHHH--------HHHHHHhcCCCeEEEEec
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKYIGASE--QAVR--------DIFSKATAAAPCLLFFDE 945 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~--~~i~v~~~el~~~~~g~se--~~l~--------~lf~~a~~~~p~VLfiDE 945 (1068)
-+|+||.|+||||||++|++++..++. +|+.+..........|.-. ..++ .++.+| ...+||+||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 368999999999999999999998864 4777764333333344321 0000 011112 224999999
Q ss_pred CCccCCCCCCCCCCcchHHHHHHHHhccCcc-----------ccCcEEEEEeCCCCC---CCChhhcCCCCcceEEEcCC
Q 001491 946 FDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPD---LLDAALLRPGRLDRLLFCDF 1011 (1068)
Q Consensus 946 id~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----------~~~~v~viatTn~~d---~ld~al~r~gRfd~~i~~~~ 1011 (1068)
++.+ .+.+++.|+..|+.-. ...++.||||+|..+ .+.++|+. ||+.++.+..
T Consensus 93 i~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~ 159 (589)
T TIGR02031 93 ANLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLED 159 (589)
T ss_pred hhhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCC
Confidence 9998 6788999999996321 113578889888765 68999998 9999887754
Q ss_pred -CCHHHHHHHHHHHHHh
Q 001491 1012 -PSPRERLDILKVISRK 1027 (1068)
Q Consensus 1012 -p~~~~r~~Il~~~l~~ 1027 (1068)
|+.++|.+|++.....
T Consensus 160 ~~~~~er~eil~~~~~~ 176 (589)
T TIGR02031 160 VASQDLRVEIVRRERCN 176 (589)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 5678899999887643
No 370
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.55 E-value=6.6e-07 Score=119.43 Aligned_cols=329 Identities=17% Similarity=0.256 Sum_probs=179.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHH---HhcCC----eEEEEcc
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA---LDHAP----SIVIFDN 663 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a---~~~~P----sILfIDE 663 (1068)
+.++++||+|+|||.++............ ..++-+...+ .......+...+..- .+..| .++|+||
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~-----~~~~fs~~ts--~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~dd 200 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREV-----YLLNFSSVTS--SELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDD 200 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchh-----eEEeeeeecc--HHHHHHHHHHHHHHhcccCCCCCCCceeEEEEec
Confidence 56999999999999998877766432111 1122222111 111111121111111 11222 3899999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCC----CCChhhhcCCcccccccCC
Q 001491 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE----KIPQSLTSSGRFDFHVQLP 739 (1068)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~----~L~~aL~~~gRF~~~i~l~ 739 (1068)
++... .+..+.+.. ..+.+++.+....+......+..+.++.++++++.+. .+++.+.| .|. .+.+.
T Consensus 201 inmp~---~~~yg~q~~---~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~ 271 (1395)
T KOG3595|consen 201 INMPA---LDKYGDQPP---IELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLN 271 (1395)
T ss_pred cCCch---hhhcCCccH---HHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeC
Confidence 98875 333444322 2555555555555555445677778999999999743 34455554 443 56889
Q ss_pred CCCHHHHHHHHHHHHhhccccCCHHH---HHHHhhc------------c-------CCCCchh-----------------
Q 001491 740 APAASERKAILEHEIQRRSLECSDEI---LLDVASK------------C-------DGYDAYD----------------- 780 (1068)
Q Consensus 740 ~P~~~er~~IL~~~l~~~~l~~~~~~---l~~la~~------------t-------~g~s~~D----------------- 780 (1068)
.|+.+....|+..++..+.. +.+.. ...++.. . .-|+.+|
T Consensus 272 ~~~~~sl~~if~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~ 350 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTGHLR-FAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALL 350 (1395)
T ss_pred CCChhhHHHHHHHHHhcccC-ccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhc
Confidence 99999999999988775432 11111 1111110 0 1123343
Q ss_pred -HHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhccc-------ccceeecccccccCCCCCCCCCCCchhHH
Q 001491 781 -LEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF-------LPVAMRDITKTSAEGGRSGWDDVGGLTDI 852 (1068)
Q Consensus 781 -L~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~~-------~P~slr~v~~~~~~~~~~~~~~i~gl~~~ 852 (1068)
+..+++-+.|.+.+-+... +.+........+.+...+... .|....++.... ...|..+...+.+
T Consensus 351 ~~~~l~~~~~~e~~rv~~dr---lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~~~~~~~l 423 (1395)
T KOG3595|consen 351 TLEDLIRLWVHEAIRVFADR---LVDDEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSES----HKIYEEVLSVELL 423 (1395)
T ss_pred cHHHHHHHHHHHHHHhhhhh---cccHHHHHHHHHHHHHHHHHHhhhhhhcCCceeeeccccc----ccccCchHhHHHH
Confidence 4455666666665543211 001111111222222222111 122211111111 1356677666666
Q ss_pred HHHHHHHHhccC----------------CchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhh
Q 001491 853 QNAIKEMIELPS----------------KFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1068)
Q Consensus 853 k~~l~e~i~~~~----------------~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~ 916 (1068)
...+........ .|.....+.-..+++|.++.|..|+||+++.+..+..+++.++++.....++
T Consensus 424 ~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~ 503 (1395)
T KOG3595|consen 424 RGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRSYN 503 (1395)
T ss_pred HHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeeccccCc
Confidence 666554433211 1111222333457899999999999999999999999999999988776654
Q ss_pred hhccccHHHHHHHHHHHhcCCCe-EEEEec
Q 001491 917 KYIGASEQAVRDIFSKATAAAPC-LLFFDE 945 (1068)
Q Consensus 917 ~~~g~se~~l~~lf~~a~~~~p~-VLfiDE 945 (1068)
.......++.+...+...... ++.++|
T Consensus 504 --~~~~~~dl~~~~r~~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 504 --IEDFREDLKAILRKAGLKNKETVFILTD 531 (1395)
T ss_pred --HHHHHHHHHHHHHHhccCCCceEEeech
Confidence 234556777888887665544 455555
No 371
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.54 E-value=2.1e-06 Score=97.28 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=47.2
Q ss_pred CCC-CCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCC-------cEEEEec
Q 001491 842 GWD-DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISVKG 911 (1068)
Q Consensus 842 ~~~-~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~-------~~i~v~~ 911 (1068)
.|+ ++.|+++.+..+.+.+..... ..+ ..+.-++|+||||||||++|+++++.++. +++.+.+
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~------g~~-~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ------GLE-ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh------cCC-CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 455 899999998888877653321 111 23456899999999999999999999865 7777765
No 372
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2.1e-06 Score=96.95 Aligned_cols=156 Identities=20% Similarity=0.237 Sum_probs=97.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCce---------------eeeEEEE--eccccccc-chhhHHHHHHHHHHHH
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------VAHIVFV--CCSRLSLE-KGPIIRQALSNFISEA 651 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~---------------~~~~~~i--~~s~l~~~-~~~~~~~~l~~~f~~a 651 (1068)
|..+||+||+|+||+++|.++|+.+-..... ...+..+ ..+.-..+ ........++++.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4569999999999999999999988643210 0112222 12110000 0001122333443333
Q ss_pred H----hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhh
Q 001491 652 L----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLT 727 (1068)
Q Consensus 652 ~----~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~ 727 (1068)
. ...-.|++||++|.+. ..-.+.|+..+++... ++.+|.+++.++.+.+.++
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLEEPp~---------~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN---------------RAACNALLKTLEEPSP---------GRYLWLISAQPARLPATIR 161 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC---------------HHHHHHHHHHhhCCCC---------CCeEEEEECChhhCchHHH
Confidence 2 2233599999999984 2445667778887653 3678888888999999999
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCc
Q 001491 728 SSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (1068)
Q Consensus 728 ~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~ 778 (1068)
| |.. .+.|++|+.++..+.+.. .+ +++.....++..+.|-.+
T Consensus 162 S--RCq-~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 162 S--RCQ-RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPG 203 (319)
T ss_pred h--hhe-EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHH
Confidence 9 765 788999999887777653 22 344445556666666433
No 373
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.53 E-value=2.2e-07 Score=95.63 Aligned_cols=97 Identities=25% Similarity=0.380 Sum_probs=69.2
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh-----hccccH-------HHHHHHHHHHhcCCCeEEEE
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGASE-------QAVRDIFSKATAAAPCLLFF 943 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~-----~~g~se-------~~l~~lf~~a~~~~p~VLfi 943 (1068)
.++|++|++||||+.+|+++-+.. +.+|+.++++.+... ..|... ..-..+|..|..+ +|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEee
Confidence 689999999999999999999876 468999999775432 223211 1123677777666 9999
Q ss_pred ecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-----c----cCcEEEEEeCCC
Q 001491 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----V----LTGVFVFAATSR 989 (1068)
Q Consensus 944 DEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----~----~~~v~viatTn~ 989 (1068)
|||+.+ ...++..|+..|+.-. . .-++-||+||+.
T Consensus 100 d~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhh-----------HHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 999999 6788899998887321 1 126889999986
No 374
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.52 E-value=1.1e-06 Score=105.80 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=124.6
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccc
Q 001491 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1068)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l 632 (1068)
+.++.|....+.++.+.+..+... ..+++|.|++|||||++|+++..... ....+++.++|..+
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~---~~~~~~i~i~c~~~ 200 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRS-------------SISVLINGESGTGKELVAHALHRHSP---RAKAPFIALNMAAI 200 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhcc-------------CCeEEEEeCCCCcHHHHHHHHHhcCC---CCCCCeEeeeCCCC
Confidence 345777888888888777554432 35699999999999999999988643 22378999999887
Q ss_pred cccchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001491 633 SLEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1068)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~---------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1068)
.... +. ..+|.. .....++.|||||++.+. . .+...|.+.++..
T Consensus 201 ~~~~---~~---~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~-----------~----~~q~~L~~~l~~~ 259 (469)
T PRK10923 201 PKDL---IE---SELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP-----------L----DVQTRLLRVLADG 259 (469)
T ss_pred CHHH---HH---HHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC-----------H----HHHHHHHHHHhcC
Confidence 4321 11 112221 111235689999999984 2 3333444444432
Q ss_pred c--cccCcccCCCcEEEEEecCCC-------CCCChhhhcCCccc-ccccCCCCCH--HHHHHHHHHHHhh----cc---
Q 001491 698 G--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS--- 758 (1068)
Q Consensus 698 ~--~~~~~~~~~~~V~vIattn~~-------~~L~~aL~~~gRF~-~~i~l~~P~~--~er~~IL~~~l~~----~~--- 758 (1068)
. ..+.......++.+|++++.. ..+.+.|.. ||. ..+.+|+... ++...++.+++.. .+
T Consensus 260 ~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~ 337 (469)
T PRK10923 260 QFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEA 337 (469)
T ss_pred cEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCC
Confidence 1 100001111257888888752 234455555 553 3456665543 4445556655543 22
Q ss_pred ccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 759 LECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 759 l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
..++++++..+..+..-.+-++|++++++++..+
T Consensus 338 ~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 338 KLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 2478899999999988888999999999987643
No 375
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.50 E-value=3e-07 Score=95.42 Aligned_cols=131 Identities=16% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc-C----CcEEEEecchh
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S----LRFISVKGPEL 914 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-g----~~~i~v~~~el 914 (1068)
+..+.+++|.++....+.-....- .-.|+++.||||||||+-+.++|+++ | -.+.++|.++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~g-------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEG-------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcC-------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 457889999999888877655421 11389999999999999999999887 3 23455665543
Q ss_pred hhhhccccHHHHHHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 915 LNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 915 ~~~~~g~se~~l~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
.+ +.- -.+--+.|..-+- ++-.|+++||+|++ +..+..+|-.-|+-. ....-+..++|..
T Consensus 90 RG--IDv-VRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiy--S~ttRFalaCN~s 153 (333)
T KOG0991|consen 90 RG--IDV-VRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIY--SNTTRFALACNQS 153 (333)
T ss_pred cc--cHH-HHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHH--cccchhhhhhcch
Confidence 21 110 1122233433322 22359999999998 567777787777632 3334445578877
Q ss_pred CCCChhhcC
Q 001491 991 DLLDAALLR 999 (1068)
Q Consensus 991 d~ld~al~r 999 (1068)
+.|=..+-.
T Consensus 154 ~KIiEPIQS 162 (333)
T KOG0991|consen 154 EKIIEPIQS 162 (333)
T ss_pred hhhhhhHHh
Confidence 775444443
No 376
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=7.4e-07 Score=100.79 Aligned_cols=127 Identities=18% Similarity=0.263 Sum_probs=93.9
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcCCc------------------------EEEEecchhhhhhccccHHHHHHHHHH
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLR------------------------FISVKGPELLNKYIGASEQAVRDIFSK 932 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g~~------------------------~i~v~~~el~~~~~g~se~~l~~lf~~ 932 (1068)
.+..+||+||.|+||+++|+++|+.+-+. +..+...+ ++. -.-..+|++.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHH
Confidence 34578899999999999999999886321 22221100 111 123566666555
Q ss_pred H----hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEE
Q 001491 933 A----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 1008 (1068)
Q Consensus 933 a----~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~ 1008 (1068)
+ ..++..|++||++|++ +....|.||+.|+ +...++++|.+|+.++.|.|.+++ |. ..+.
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~~~ 162 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QTWL 162 (325)
T ss_pred HhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eEEe
Confidence 4 3345579999999999 6789999999998 677888888999999999999988 55 4589
Q ss_pred cCCCCHHHHHHHHHH
Q 001491 1009 CDFPSPRERLDILKV 1023 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il~~ 1023 (1068)
|.+|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 163 IHPPEEQQALDWLQA 177 (325)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999998887766654
No 377
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.49 E-value=1.9e-07 Score=116.55 Aligned_cols=196 Identities=18% Similarity=0.177 Sum_probs=115.7
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhh--
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-- 916 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~-- 916 (1068)
.++++.|.....+.+.+.+.... +...++||+|++||||+++|+++.... +.+|+.+++..+..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 46677776665555554444221 233579999999999999999999876 46899999876532
Q ss_pred ---hhcccc----HHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccc--cC-------c
Q 001491 917 ---KYIGAS----EQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LT-------G 980 (1068)
Q Consensus 917 ---~~~g~s----e~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~--~~-------~ 980 (1068)
.+.|.. .......|+.| ...+|||||++.+ ...+...|+..|+.-.- .+ +
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 122211 11111123333 3459999999998 66788888888863221 11 4
Q ss_pred EEEEEeCCCCC-------CCChhhcCCCCcceEEEcCCCCHHHHH----HHHHHHHHhhccC-CCCCchhhHHHHHHHHH
Q 001491 981 VFVFAATSRPD-------LLDAALLRPGRLDRLLFCDFPSPRERL----DILKVISRKVCDT-SIPFSSLFCNELLICKL 1048 (1068)
Q Consensus 981 v~viatTn~~d-------~ld~al~r~gRfd~~i~~~~p~~~~r~----~Il~~~l~~~~~~-~id~~~l~~~~~~~~~l 1048 (1068)
+.||+||+..- .+.+.|.- ||. .+.+..|...+|. .+++.+++++... .... . .+.+++..-.
T Consensus 458 ~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~-~-~s~~a~~~L~ 532 (638)
T PRK11388 458 VRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRL-K-IDDDALARLV 532 (638)
T ss_pred EEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCC-C-cCHHHHHHHH
Confidence 77888888631 12233332 332 3556667666664 4455555554211 1111 1 2344444444
Q ss_pred hhhhhcccccccccccccc
Q 001491 1049 WHFFMCVSLNLSSYIIFCF 1067 (1068)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~ 1067 (1068)
.+...+|..+|.++++.++
T Consensus 533 ~y~WPGNvreL~~~l~~~~ 551 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLA 551 (638)
T ss_pred cCCCCChHHHHHHHHHHHH
Confidence 4555788888888887754
No 378
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=1.1e-06 Score=107.11 Aligned_cols=169 Identities=11% Similarity=0.198 Sum_probs=103.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEE-Eecch-----
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS-VKGPE----- 913 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~-v~~~e----- 913 (1068)
+..++++.+.++..+.+..++.... .+..++..++|+||||||||++++++|+.++..+++ .+...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 3578888998888887777655321 112233458999999999999999999999876544 22110
Q ss_pred -----------hhhhhccccHHHHHHHHHHHh----------cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHH-h
Q 001491 914 -----------LLNKYIGASEQAVRDIFSKAT----------AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT-E 971 (1068)
Q Consensus 914 -----------l~~~~~g~se~~l~~lf~~a~----------~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~-~ 971 (1068)
-+..+ ...-..++.++.++. .....|||||||+.++.+ ..+.+..+|. .
T Consensus 152 ~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lLr~~ 222 (637)
T TIGR00602 152 NDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEILRWK 222 (637)
T ss_pred cccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHHHHH
Confidence 00111 112234556666554 234579999999987522 2234555554 2
Q ss_pred ccCccccCcEEEEEeCCCCC--------------CCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 972 LDGVEVLTGVFVFAATSRPD--------------LLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 972 Ld~~~~~~~v~viatTn~~d--------------~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.. +...-.+|+++|..+. .|.++++...|. .+|.|++.+.....+.++.+++..
T Consensus 223 ~~--e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 223 YV--SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred hh--cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 21 2222334444442221 134677753455 368999999999888888888754
No 379
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.49 E-value=9.1e-07 Score=106.46 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=55.0
Q ss_pred CCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhh------cc----------------------c
Q 001491 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY------IG----------------------A 921 (1068)
Q Consensus 873 ~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~------~g----------------------~ 921 (1068)
.++.++..+|+.||||+|||+++-.++... |.+.+.+...|-...+ +| .
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 467788899999999999999987777644 6677777644432211 01 0
Q ss_pred cHHHHHHHHHHHhcCCCeEEEEecCCccC
Q 001491 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1068)
Q Consensus 922 se~~l~~lf~~a~~~~p~VLfiDEid~l~ 950 (1068)
.+..+..+.+.+...+|.+++||-+..+.
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 14455666777777788999999988764
No 380
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=1.1e-06 Score=100.16 Aligned_cols=138 Identities=20% Similarity=0.248 Sum_probs=91.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhccCCce-------------------eeeEEEEeccccc---------------
Q 001491 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-------------------VAHIVFVCCSRLS--------------- 633 (1068)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~-------------------~~~~~~i~~s~l~--------------- 633 (1068)
..+..+||+||+|+||+++|+++|+.+...... ...+..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 445679999999999999999999998653210 0112333222110
Q ss_pred ------------ccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcccc
Q 001491 634 ------------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1068)
Q Consensus 634 ------------~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1068)
.-..+.++.....+..........|++||++|.+.. .-.+.|+..+++...
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~-- 161 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLEEPPP-- 161 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCc--
Confidence 011233333322222112223345999999999842 445667777777543
Q ss_pred CcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHH
Q 001491 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1068)
Q Consensus 702 ~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~ 752 (1068)
++++|.+|+.++.+.+.++| |.. .+.|++|+.++..+.|..
T Consensus 162 -------~t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 162 -------GTVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -------CcEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHH
Confidence 47889999999999999999 765 789999999998888765
No 381
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.49 E-value=2.8e-07 Score=111.73 Aligned_cols=196 Identities=18% Similarity=0.231 Sum_probs=115.4
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~ 917 (1068)
..++++.|.....+.+.+.+.... ....++||+|++||||+++|+++-... +.+|+.++|..+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 567778777665555554443211 123569999999999999999987665 468999998775321
Q ss_pred -----hccccH-------HHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--c------
Q 001491 918 -----YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V------ 977 (1068)
Q Consensus 918 -----~~g~se-------~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--~------ 977 (1068)
..|... ..-..+|+.|.. ..|||||++.+ .......|+..++.-. .
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCCcc
Confidence 112111 111234555543 38999999998 5677788888876421 1
Q ss_pred -cCcEEEEEeCCCC-------CCCChhhcCCCCcceEEEcCCCCHHHHH----HHHHHHHHhhccC-CCCCchhhHHHHH
Q 001491 978 -LTGVFVFAATSRP-------DLLDAALLRPGRLDRLLFCDFPSPRERL----DILKVISRKVCDT-SIPFSSLFCNELL 1044 (1068)
Q Consensus 978 -~~~v~viatTn~~-------d~ld~al~r~gRfd~~i~~~~p~~~~r~----~Il~~~l~~~~~~-~id~~~l~~~~~~ 1044 (1068)
..++.||+||+.. ..+.+.|.. |+.. +.+..|...+|. .+++.++++...+ .... ....+.+
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~--~~ls~~a 410 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPR--PKLAADL 410 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCC--CCcCHHH
Confidence 1246788888764 124445554 6543 556666665555 3445555554221 1111 1123344
Q ss_pred HHHH-hhhhhccccccccccccc
Q 001491 1045 ICKL-WHFFMCVSLNLSSYIIFC 1066 (1068)
Q Consensus 1045 ~~~l-~~~~~~~~~~~~~~~~~~ 1066 (1068)
...| .+...+|..+|.++++.+
T Consensus 411 ~~~L~~y~WPGNvreL~nvl~~a 433 (520)
T PRK10820 411 NTVLTRYGWPGNVRQLKNAIYRA 433 (520)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHH
Confidence 4444 334677777777766654
No 382
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.48 E-value=1.4e-07 Score=113.57 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=100.9
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~ 917 (1068)
..++++.|.....+.+.+.+.... +...++|++|++||||+++|+++-... +.+|+.++|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 457788888877777766665321 223589999999999999999998765 578999998765321
Q ss_pred -----hccccH--------HHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-----ccC
Q 001491 918 -----YIGASE--------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----VLT 979 (1068)
Q Consensus 918 -----~~g~se--------~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----~~~ 979 (1068)
..|..+ ..-..+|+.|..+ .|||||++.+ .......|+..|+.-. ...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 122111 1123455555444 8999999998 6778888888886322 111
Q ss_pred ----cEEEEEeCCCCC--C-----CChhhcCCCCcceEEEcCCCCHHHHH----HHHHHHHHhh
Q 001491 980 ----GVFVFAATSRPD--L-----LDAALLRPGRLDRLLFCDFPSPRERL----DILKVISRKV 1028 (1068)
Q Consensus 980 ----~v~viatTn~~d--~-----ld~al~r~gRfd~~i~~~~p~~~~r~----~Il~~~l~~~ 1028 (1068)
++-+|+||+..- . +.+.|.. |++ .+.+..|...+|. .+++.++++.
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~ 404 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQA 404 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHH
Confidence 357888887641 1 2233333 443 2455566665555 4455555554
No 383
>PRK08116 hypothetical protein; Validated
Probab=98.48 E-value=5.5e-07 Score=99.89 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=79.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccc----cHHHHHHHHHHHhcCCCeEEEEecCCccCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA----SEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~----se~~l~~lf~~a~~~~p~VLfiDEid~l~~ 951 (1068)
.+++|+|++|||||+||.++|+.+ |.+++.++.++++..+... ......+++.... ...+|+|||++...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~- 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER- 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-
Confidence 479999999999999999999986 7888999988887654321 1122333444332 33599999996531
Q ss_pred CCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC-CC----CChhhcCCCCc---ceEEEcCCCCHHHHHHHHHH
Q 001491 952 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP-DL----LDAALLRPGRL---DRLLFCDFPSPRERLDILKV 1023 (1068)
Q Consensus 952 ~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~-d~----ld~al~r~gRf---d~~i~~~~p~~~~r~~Il~~ 1023 (1068)
..+.....|...++..... +..+|.|||.+ +. ++..+.. |+ -..|.|.-++. |.++.+.
T Consensus 192 --------~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~~~e 258 (268)
T PRK08116 192 --------DTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEIAKE 258 (268)
T ss_pred --------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHHHHH
Confidence 1334455566666643333 33455678865 22 4555554 54 33466666654 4444443
No 384
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.47 E-value=4.8e-07 Score=109.66 Aligned_cols=192 Identities=22% Similarity=0.206 Sum_probs=117.6
Q ss_pred CCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh--
Q 001491 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-- 917 (1068)
Q Consensus 843 ~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~-- 917 (1068)
..++.|.....+.+.+.+.... ....++||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 3456666666666666655321 234589999999999999999999886 578999998776321
Q ss_pred ---hccccH-------HHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccc---------c
Q 001491 918 ---YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------L 978 (1068)
Q Consensus 918 ---~~g~se-------~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~---------~ 978 (1068)
+.|... ......|..|. ...|||||++.+ ...+...|+..|+.-.- .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCccee
Confidence 112110 00112344443 348999999998 56778888888764221 1
Q ss_pred CcEEEEEeCCCC-------CCCChhhcCCCCcceEEEcCCCCHHHHH----HHHHHHHHhhcc----CCCCCchhhHHHH
Q 001491 979 TGVFVFAATSRP-------DLLDAALLRPGRLDRLLFCDFPSPRERL----DILKVISRKVCD----TSIPFSSLFCNEL 1043 (1068)
Q Consensus 979 ~~v~viatTn~~-------d~ld~al~r~gRfd~~i~~~~p~~~~r~----~Il~~~l~~~~~----~~id~~~l~~~~~ 1043 (1068)
-++-||+||++. ..+.+.|.. |+. .+.+..|...+|. .++++++++... ..+. ...++
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~----~s~~a 393 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLR----LSPAA 393 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCC----CCHHH
Confidence 257888888864 123444443 443 2455666666664 445555555421 1122 24455
Q ss_pred HHHHHhhhhhccccccccccccc
Q 001491 1044 LICKLWHFFMCVSLNLSSYIIFC 1066 (1068)
Q Consensus 1044 ~~~~l~~~~~~~~~~~~~~~~~~ 1066 (1068)
+..-..+...+|..+|.++++.+
T Consensus 394 ~~~L~~y~WPGNvrEL~~~i~ra 416 (509)
T PRK05022 394 QAALLAYDWPGNVRELEHVISRA 416 (509)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHH
Confidence 55555566677777777777654
No 385
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.47 E-value=2.7e-06 Score=91.05 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=68.5
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCC-------------CCC
Q 001491 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-------------LEK 721 (1068)
Q Consensus 655 ~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~-------------~~~ 721 (1068)
-|++|||||+++|- .....+|...++... .++ +|+++|+ |+.
T Consensus 296 vPGVLFIDEVhMLD---------------iEcFTyL~kalES~i---------aPi-vifAsNrG~~~irGt~d~~sPhG 350 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD---------------IECFTYLHKALESPI---------API-VIFASNRGMCTIRGTEDILSPHG 350 (456)
T ss_pred cCcceEeeehhhhh---------------hHHHHHHHHHhcCCC---------Cce-EEEecCCcceeecCCcCCCCCCC
Confidence 48899999999983 244555666555422 234 4455554 456
Q ss_pred CChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCc
Q 001491 722 IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (1068)
Q Consensus 722 L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~ 778 (1068)
+++.|.. |.- .+...+++.++.++|++...+..++.++++.+..++......+-
T Consensus 351 ip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsL 404 (456)
T KOG1942|consen 351 IPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSL 404 (456)
T ss_pred CCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhH
Confidence 7778777 654 56777888999999999999989999999999988876544333
No 386
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.44 E-value=5.2e-07 Score=107.88 Aligned_cols=144 Identities=21% Similarity=0.304 Sum_probs=90.5
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecc-hhhh
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGP-ELLN 916 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~----g~~~i~v~~~-el~~ 916 (1068)
.++++.|+..+++.+.-... .+.+++|+||||||||++|+.++..+ +..++....- ++.+
T Consensus 190 d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 67788888887666544322 33589999999999999999999754 1112221110 0000
Q ss_pred -----------------------hhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhcc
Q 001491 917 -----------------------KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1068)
Q Consensus 917 -----------------------~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld 973 (1068)
..+|.....-...+..|.. .+|||||++.+ .+.++..|++.|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----------~~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----------KRSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----------CHHHHHHHHHHHH
Confidence 0011100011123344433 49999999987 5678888888886
Q ss_pred Ccc----c-------cCcEEEEEeCCCC-----C------------------CCChhhcCCCCcceEEEcCCCCHHH
Q 001491 974 GVE----V-------LTGVFVFAATSRP-----D------------------LLDAALLRPGRLDRLLFCDFPSPRE 1016 (1068)
Q Consensus 974 ~~~----~-------~~~v~viatTn~~-----d------------------~ld~al~r~gRfd~~i~~~~p~~~~ 1016 (1068)
.-. . ..++.+|+|+|.- + .|...|+. |||-.+.+++++.++
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEK 395 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHH
Confidence 322 1 1357888888852 1 37788888 999999999887653
No 387
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=2.6e-06 Score=96.97 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=88.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhccCCc-------------------eeeeEEEEecccc---cc-----cchhhH
Q 001491 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------------------LVAHIVFVCCSRL---SL-----EKGPII 640 (1068)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~-------------------~~~~~~~i~~s~l---~~-----~~~~~~ 640 (1068)
..+..+||+||+|+|||++|+.+|+.+..... ....++++++..- .+ -..+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34567999999999999999999999863211 0133455554221 01 123444
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCC
Q 001491 641 RQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE 720 (1068)
Q Consensus 641 ~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~ 720 (1068)
+.....+..........|+++|+++.+-. ...+.|+..+++... .+.+|.+|+.++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~~---------~~~~Ilvth~~~ 154 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPPP---------QVVFLLVSHAAD 154 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCcC---------CCEEEEEeCChH
Confidence 44333332222223445899999998831 445556666766532 256777888888
Q ss_pred CCChhhhcCCcccccccCCCCCHHHHHHHHHH
Q 001491 721 KIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1068)
Q Consensus 721 ~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~ 752 (1068)
.+.+.+++ |.. .+.|++|+.++..+.+..
T Consensus 155 ~ll~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 155 KVLPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hChHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 99999998 654 788999999987777653
No 388
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.43 E-value=9.9e-08 Score=109.35 Aligned_cols=197 Identities=22% Similarity=0.185 Sum_probs=121.7
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~ 917 (1068)
.....|+|.......+.+.++...+ ....+|+.|.+||||-.+|+++-+.+ ..+|+.+||+.+...
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~-----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAK-----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhc-----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 3456788888877777777765422 34689999999999999999999888 578999998765432
Q ss_pred ---------hccccHHH---HHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-----ccC-
Q 001491 918 ---------YIGASEQA---VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----VLT- 979 (1068)
Q Consensus 918 ---------~~g~se~~---l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----~~~- 979 (1068)
--|++-.. -+.-|+.|-++ -||+|||..+ ...++..||..|+.-+ +.+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCce
Confidence 12222111 12334444333 8999999998 6678888988876322 222
Q ss_pred ---cEEEEEeCCCCCCCChhhcCCCCcce-------EEEcCCCCHHHHH----HHHHHHHHhhccCCCCCchhhHHHHHH
Q 001491 980 ---GVFVFAATSRPDLLDAALLRPGRLDR-------LLFCDFPSPRERL----DILKVISRKVCDTSIPFSSLFCNELLI 1045 (1068)
Q Consensus 980 ---~v~viatTn~~d~ld~al~r~gRfd~-------~i~~~~p~~~~r~----~Il~~~l~~~~~~~id~~~l~~~~~~~ 1045 (1068)
.|-||||||+ +|-.+... |+|-. ++.+..|...||. -+.+++++++-. ..-...+.....+.
T Consensus 355 ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~-~~gr~~l~ls~~Al 430 (550)
T COG3604 355 IKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRR-RLGRAILSLSAEAL 430 (550)
T ss_pred eEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHH-hcCCcccccCHHHH
Confidence 4899999997 33333332 55432 4556666666664 444555555511 11122222333344
Q ss_pred HHH-hhhhhccccccccccccc
Q 001491 1046 CKL-WHFFMCVSLNLSSYIIFC 1066 (1068)
Q Consensus 1046 ~~l-~~~~~~~~~~~~~~~~~~ 1066 (1068)
..| .-.+.+|..||.++++-+
T Consensus 431 ~~L~~y~wPGNVRELen~veRa 452 (550)
T COG3604 431 ELLSSYEWPGNVRELENVVERA 452 (550)
T ss_pred HHHHcCCCCCcHHHHHHHHHHH
Confidence 333 345566666666666543
No 389
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.41 E-value=6.4e-06 Score=93.48 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=42.4
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhcc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~ 616 (1068)
++.|++++++++.+.+.....- . ....+.++|+|||||||||+|++|++.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g--------~-~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQG--------L-EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhc--------C-CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7899999999999988664421 0 123466899999999999999999999863
No 390
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.3e-06 Score=99.78 Aligned_cols=128 Identities=22% Similarity=0.279 Sum_probs=93.4
Q ss_pred cccceEEEECCCCCChhHHHHHHHHHcCC------------------------cEEEEecchhhhhhccccHHHHHHHHH
Q 001491 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFS 931 (1068)
Q Consensus 876 ~~~~~lLL~GppGtGKT~lA~alA~~~g~------------------------~~i~v~~~el~~~~~g~se~~l~~lf~ 931 (1068)
+.+..+||+||+|+||+++|.++|+.+-+ ++..+.. +--.. .-.-+.+|++.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-~~~~~--~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP-EKGKS--SLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-ccccc--cCCHHHHHHHHH
Confidence 34467889999999999999999988622 1222211 00000 012345566555
Q ss_pred HH----hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEE
Q 001491 932 KA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLL 1007 (1068)
Q Consensus 932 ~a----~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i 1007 (1068)
.+ ..+...|++||++|++ +....|.||+.|+ +...++++|.+|+.++.|.|-+++ |.. .+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred HHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 44 3355679999999999 7889999999998 677888889999999999999998 654 47
Q ss_pred EcCCCCHHHHHHHHH
Q 001491 1008 FCDFPSPRERLDILK 1022 (1068)
Q Consensus 1008 ~~~~p~~~~r~~Il~ 1022 (1068)
.|++|+.++..+.+.
T Consensus 163 ~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 163 YLAPPPEQYALTWLS 177 (334)
T ss_pred cCCCCCHHHHHHHHH
Confidence 999999887776664
No 391
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.40 E-value=3e-06 Score=101.76 Aligned_cols=197 Identities=15% Similarity=0.200 Sum_probs=116.6
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1068)
.+.|....+..+.+.+..+... ..+++++|++||||+++|+++...... ...+++.++|..+..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~~~i~c~~~~~ 207 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALS-------------QASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALPE 207 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCC-------------CcEEEEEcCCCccHHHHHHHHHHhCCC---CCCCeEEEECCCCCH
Confidence 4666677777777776555432 256999999999999999999875432 236789999988753
Q ss_pred cchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-
Q 001491 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1068)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1068)
.. .. ..+|.. ......++|||||++.+. . .+...|...++.-.
T Consensus 208 ~~---~~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~-----------~----~~q~~L~~~l~~~~~ 266 (457)
T PRK11361 208 SL---LE---SELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP-----------L----VLQAKLLRILQEREF 266 (457)
T ss_pred HH---HH---HHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCC-----------H----HHHHHHHHHHhcCcE
Confidence 21 11 111211 111234699999999984 2 23333444443211
Q ss_pred -cccCcccCCCcEEEEEecCCCC-------CCChhhhcCCcccccccCCCCCHHHHH----HHHHHHHhhc----c---c
Q 001491 699 -EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASERK----AILEHEIQRR----S---L 759 (1068)
Q Consensus 699 -~~~~~~~~~~~V~vIattn~~~-------~L~~aL~~~gRF~~~i~l~~P~~~er~----~IL~~~l~~~----~---l 759 (1068)
..+.......++.+|++++..- .+.+.+.. |+. .+.+..|...+|. .++.+++.+. + .
T Consensus 267 ~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~ 343 (457)
T PRK11361 267 ERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDII 343 (457)
T ss_pred EeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 1011111112578899887531 22233322 332 2344445444443 3444443321 1 3
Q ss_pred cCCHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001491 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 760 ~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
.++++++..+..+..-.+.++|++++++++..
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 58899999999888777889999999988754
No 392
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.39 E-value=2.7e-06 Score=102.26 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=122.3
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1068)
.+.|....+.++.+.+..+... ..++++.|++||||+++|+++...... ...+++.++|..+..
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~-------------~~~vli~Ge~GtGK~~~A~~ih~~~~~---~~~~~~~~~c~~~~~ 198 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRS-------------DITVLINGESGTGKELVARALHRHSPR---ANGPFIALNMAAIPK 198 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCc-------------CCeEEEECCCCCCHHHHHHHHHHhCCC---CCCCeEEEeCCCCCH
Confidence 4667777788887777554332 256999999999999999999886432 236788999988743
Q ss_pred cchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-
Q 001491 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1068)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1068)
... +. .+|.. .....++.|||||++.+. .. ....|.+.++...
T Consensus 199 ~~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~-----------~~----~q~~ll~~l~~~~~ 257 (463)
T TIGR01818 199 DLI---ES---ELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP-----------LD----AQTRLLRVLADGEF 257 (463)
T ss_pred HHH---HH---HhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC-----------HH----HHHHHHHHHhcCcE
Confidence 211 11 11110 112235789999999983 22 2333444443211
Q ss_pred -cccCcccCCCcEEEEEecCCC-------CCCChhhhcCCccc-ccccCCCCC--HHHHHHHHHHHHhhc----c---cc
Q 001491 699 -EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR----S---LE 760 (1068)
Q Consensus 699 -~~~~~~~~~~~V~vIattn~~-------~~L~~aL~~~gRF~-~~i~l~~P~--~~er~~IL~~~l~~~----~---l~ 760 (1068)
..+.......++.+|++++.. ..+.+.|.. |+. ..+++|+.. .++...++++++... + ..
T Consensus 258 ~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 335 (463)
T TIGR01818 258 YRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKL 335 (463)
T ss_pred EECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 000001111257788888753 123334443 443 356777766 456666666655432 2 35
Q ss_pred CCHHHHHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 761 ~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
++++++..+..+..-.+-++|++++++++..+
T Consensus 336 ~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 336 LDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 88999999998877677899999999988654
No 393
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=3.9e-06 Score=94.75 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=94.0
Q ss_pred cccceEEEECCCCCChhHHHHHHHHHcCC-----------------------cEEEEecchhhhhhccccHHHHHHHHHH
Q 001491 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL-----------------------RFISVKGPELLNKYIGASEQAVRDIFSK 932 (1068)
Q Consensus 876 ~~~~~lLL~GppGtGKT~lA~alA~~~g~-----------------------~~i~v~~~el~~~~~g~se~~l~~lf~~ 932 (1068)
+.+..+||+||.|+||+++|+.+|+.+-. ++..+...+ -++. -.-+.+|++-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHH
Confidence 34567999999999999999999987621 122222110 0011 123455665544
Q ss_pred H----hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEE
Q 001491 933 A----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 1008 (1068)
Q Consensus 933 a----~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~ 1008 (1068)
+ ..++..|++||++|.+ .....|.||+.|+ +...++++|.+|+.++.|-|-+++ |. ..+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~ 163 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RC-QQWV 163 (319)
T ss_pred HhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc-eeEe
Confidence 4 2344579999999999 6789999999998 677788899999999999999998 55 3589
Q ss_pred cCCCCHHHHHHHHHH
Q 001491 1009 CDFPSPRERLDILKV 1023 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il~~ 1023 (1068)
|++|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999888776653
No 394
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.38 E-value=2.8e-07 Score=96.51 Aligned_cols=46 Identities=28% Similarity=0.405 Sum_probs=32.1
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001491 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1068)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~ 615 (1068)
|+++.|++.++..+.=.. . . +.|+||+||||||||++|+++...|.
T Consensus 2 f~dI~GQe~aKrAL~iAA--a-G--------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAA--A-G--------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHH--H-C--------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHH--c-C--------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 567888887776553211 1 1 36899999999999999999998765
No 395
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=3e-06 Score=95.73 Aligned_cols=131 Identities=24% Similarity=0.323 Sum_probs=91.7
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcCCc---------------------EEEEe-cchhhhh--hccccHHHHHHHHHH
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLR---------------------FISVK-GPELLNK--YIGASEQAVRDIFSK 932 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g~~---------------------~i~v~-~~el~~~--~~g~se~~l~~lf~~ 932 (1068)
.+..+||+||+|+||+++|.++|+.+-+. +..+. .++-.++ ...-.-+.+|++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 34569999999999999999999876221 11111 0100000 000123456666655
Q ss_pred Hhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEE
Q 001491 933 ATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLF 1008 (1068)
Q Consensus 933 a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~ 1008 (1068)
+.. ++..|++||++|.+ +....|.||+.|+ +...++++|.+|+.++.|-|-+++ |. ..+.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RC-q~i~ 168 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RC-QRLE 168 (319)
T ss_pred HhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hh-eEee
Confidence 432 34569999999999 6789999999998 566778888889999999999998 65 4589
Q ss_pred cCCCCHHHHHHHHHH
Q 001491 1009 CDFPSPRERLDILKV 1023 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il~~ 1023 (1068)
|++|+.++-.+.+..
T Consensus 169 ~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 169 FKLPPAHEALAWLLA 183 (319)
T ss_pred CCCcCHHHHHHHHHH
Confidence 999998877766653
No 396
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=9.1e-06 Score=101.08 Aligned_cols=139 Identities=17% Similarity=0.253 Sum_probs=90.8
Q ss_pred cccccchhHHHHHHHHHHHhcCCCcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc-
Q 001491 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL-PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR- 631 (1068)
Q Consensus 554 ~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~-~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~- 631 (1068)
..++|.+.++..|-+.+...-.- ++- .+...+||.||.|+|||-||+++|..+.... ..++.++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g--------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse---~~~IriDmse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG--------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE---ENFIRLDMSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc--------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc---cceEEechhhh
Confidence 45788888888888877543211 111 3556799999999999999999999985333 6688888885
Q ss_pred -----ccccchhhHHHHHHHHHHHHHhcCC-eEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--cccCc
Q 001491 632 -----LSLEKGPIIRQALSNFISEALDHAP-SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRKS 703 (1068)
Q Consensus 632 -----l~~~~~~~~~~~l~~~f~~a~~~~P-sILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~~~ 703 (1068)
+.+...+-.-..--..+.++..+.| +|++|||||...+ .+...|...+|... +..+.
T Consensus 631 ~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~---------------~v~n~llq~lD~GrltDs~Gr 695 (898)
T KOG1051|consen 631 QEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP---------------DVLNILLQLLDRGRLTDSHGR 695 (898)
T ss_pred hhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH---------------HHHHHHHHHHhcCccccCCCc
Confidence 3222111111111123344444555 8999999998641 56666777777644 22233
Q ss_pred ccCCCcEEEEEecCC
Q 001491 704 SCGIGPIAFVASAQS 718 (1068)
Q Consensus 704 ~~~~~~V~vIattn~ 718 (1068)
..+..+++||+|+|.
T Consensus 696 ~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 696 EVDFKNAIFIMTSNV 710 (898)
T ss_pred EeeccceEEEEeccc
Confidence 455678999999886
No 397
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=5.1e-06 Score=94.74 Aligned_cols=196 Identities=19% Similarity=0.208 Sum_probs=120.5
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1068)
.+.|.+..+..+.+.++.-+. ..-++.+.+.|-||||||.+...+...+..... ....++++|..+..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle-----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~-~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE-----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK-SPVTVYINCTSLTE 218 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh-----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcc-cceeEEEeeccccc
Confidence 456788888888888766544 444577999999999999999877776653322 23568899976542
Q ss_pred cc--hhhH-------------HHHHHHHHHHH-Hhc-CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001491 635 EK--GPII-------------RQALSNFISEA-LDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1068)
Q Consensus 635 ~~--~~~~-------------~~~l~~~f~~a-~~~-~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1068)
.. +..+ .......|..- ... .+-++++||+|.|..... ..+..+. .+..+
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~vLy~lF-ewp~l 285 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------TVLYTLF-EWPKL 285 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------ceeeeeh-hcccC
Confidence 11 1110 11111222221 122 356899999999972111 1111111 12222
Q ss_pred ccccCcccCCCcEEEEEecCCCCCCChhhhc----CCcccccccCCCCCHHHHHHHHHHHHhhcccc-CCHHHHHHHhhc
Q 001491 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTS----SGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASK 772 (1068)
Q Consensus 698 ~~~~~~~~~~~~V~vIattn~~~~L~~aL~~----~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~-~~~~~l~~la~~ 772 (1068)
.. ..+++||.+|..+.-|..|.+ .+.-...+.|++++.++..+|++..+...... +-+.+++.+|+.
T Consensus 286 p~--------sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArK 357 (529)
T KOG2227|consen 286 PN--------SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARK 357 (529)
T ss_pred Cc--------ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 22 148899999987654433332 12233467999999999999999887764432 334568888888
Q ss_pred cCCCCchhHHHH
Q 001491 773 CDGYDAYDLEIL 784 (1068)
Q Consensus 773 t~g~s~~DL~~L 784 (1068)
..|.+| |++.+
T Consensus 358 vaa~SG-DlRka 368 (529)
T KOG2227|consen 358 VAAPSG-DLRKA 368 (529)
T ss_pred hccCch-hHHHH
Confidence 888776 55543
No 398
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=7.3e-06 Score=92.60 Aligned_cols=137 Identities=14% Similarity=0.193 Sum_probs=91.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCc-----------------eeeeEEEEecccc-cccchhhHHHHHHHHHHH
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD-----------------LVAHIVFVCCSRL-SLEKGPIIRQALSNFISE 650 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~-----------------~~~~~~~i~~s~l-~~~~~~~~~~~l~~~f~~ 650 (1068)
.+..+||+||.|+||+++|+++|+.+-.... ....+..+....- ..-..+.++.....+...
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 3466999999999999999999998864321 0112333333211 111234444433222222
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCC
Q 001491 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1068)
Q Consensus 651 a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~g 730 (1068)
.......|++||++|.+. ..-.+.|+..+++-.. ++++|..|+.++.+.|.++|
T Consensus 104 ~~~~~~kV~iI~~ae~m~---------------~~AaNaLLKtLEEPp~---------~t~fiL~t~~~~~lLpTI~S-- 157 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMN---------------ESASNALLKTLEEPAP---------NCLFLLVTHNQKRLLPTIVS-- 157 (319)
T ss_pred cccCCceEEEecchhhhC---------------HHHHHHHHHHhcCCCC---------CeEEEEEECChhhChHHHHh--
Confidence 222334699999999984 2456677777877543 47888889999999999999
Q ss_pred cccccccCCCCCHHHHHHHHHH
Q 001491 731 RFDFHVQLPAPAASERKAILEH 752 (1068)
Q Consensus 731 RF~~~i~l~~P~~~er~~IL~~ 752 (1068)
|.. .+.|++|+.++..+.+..
T Consensus 158 RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 158 RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred cce-eEeCCCCCHHHHHHHHHH
Confidence 665 789999999988777654
No 399
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=1.3e-06 Score=94.17 Aligned_cols=183 Identities=20% Similarity=0.264 Sum_probs=94.3
Q ss_pred ccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEec-ccccc-
Q 001491 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC-SRLSL- 634 (1068)
Q Consensus 557 ~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~-s~l~~- 634 (1068)
.|.+..++.+.+.+.. .+...++|+||.|+|||+|++.+.+.+..... ..+++++ .....
T Consensus 2 ~gR~~el~~l~~~l~~---------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~ 63 (234)
T PF01637_consen 2 FGREKELEKLKELLES---------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNES 63 (234)
T ss_dssp -S-HHHHHHHHHCHHH-----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHH
T ss_pred CCHHHHHHHHHHHHHh---------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhh
Confidence 3566666666554321 12367999999999999999999998742211 1112221 11000
Q ss_pred ---------------------------------cchhhHHHHHHHHHHHHHhc-CCeEEEEccchhhhcCCCCCCCCCCc
Q 001491 635 ---------------------------------EKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPS 680 (1068)
Q Consensus 635 ---------------------------------~~~~~~~~~l~~~f~~a~~~-~PsILfIDEiD~L~~~~~~~~~~~~~ 680 (1068)
.........+..++...... ...+|+|||++.+. ....
T Consensus 64 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~~~~------- 135 (234)
T PF01637_consen 64 SLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-IASE------- 135 (234)
T ss_dssp HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-BCTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-hccc-------
Confidence 00112233344455544433 34799999999996 1111
Q ss_pred hhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCC------CChhhhcCCcccccccCCCCCHHHHHHHHHHHH
Q 001491 681 TSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1068)
Q Consensus 681 ~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~------L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l 754 (1068)
....+...|...++...... ++.+|.++..... -...+. +|+.. +.+++.+.++..+++...+
T Consensus 136 -~~~~~~~~l~~~~~~~~~~~-------~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 136 -EDKDFLKSLRSLLDSLLSQQ-------NVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELF 204 (234)
T ss_dssp -TTHHHHHHHHHHHHH----T-------TEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHhhccccC-------CceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHH
Confidence 11255566666666533221 2444444433111 112222 26665 9999999999999999887
Q ss_pred hhccccC--CHHHHHHHhhccCCCC
Q 001491 755 QRRSLEC--SDEILLDVASKCDGYD 777 (1068)
Q Consensus 755 ~~~~l~~--~~~~l~~la~~t~g~s 777 (1068)
... ..+ ++..++.+...+.|+.
T Consensus 205 ~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 205 KEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HCC-------HHHHHHHHHHHTT-H
T ss_pred HHh-hcccCCHHHHHHHHHHhCCCH
Confidence 765 544 8888999999998863
No 400
>PRK15115 response regulator GlrR; Provisional
Probab=98.35 E-value=3.6e-06 Score=100.71 Aligned_cols=197 Identities=14% Similarity=0.232 Sum_probs=115.5
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccc
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1068)
.+.|....+..+.+.+..+... ...++|+|++|||||++|+++.+.... ...+++.++|..+..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~-------------~~~vli~Ge~GtGk~~lA~~ih~~s~r---~~~~f~~i~c~~~~~ 198 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS-------------DVSVLINGQSGTGKEILAQAIHNASPR---ASKPFIAINCGALPE 198 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC-------------CCeEEEEcCCcchHHHHHHHHHHhcCC---CCCCeEEEeCCCCCH
Confidence 3455666666666665444321 246999999999999999999886432 226799999998743
Q ss_pred cchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-
Q 001491 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1068)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1068)
...+ . .+|.. ......+.|||||+|.|. . .....|...++...
T Consensus 199 ~~~~---~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-----------~----~~q~~L~~~l~~~~~ 257 (444)
T PRK15115 199 QLLE---S---ELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP-----------A----PLQVKLLRVLQERKV 257 (444)
T ss_pred HHHH---H---HhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC-----------H----HHHHHHHHHHhhCCE
Confidence 2211 1 12211 111235689999999984 2 23333444443311
Q ss_pred -cccCcccCCCcEEEEEecCCCCCCChhhhcCCcccc-------cccCCCCCHHHHH----HHHHHHHhh----cc---c
Q 001491 699 -EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAASERK----AILEHEIQR----RS---L 759 (1068)
Q Consensus 699 -~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~-------~i~l~~P~~~er~----~IL~~~l~~----~~---l 759 (1068)
..+.......++.+|++++. ++...+ ..++|.. .+.+..|...+|. .++++++.. .+ .
T Consensus 258 ~~~g~~~~~~~~~rii~~~~~--~l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~ 334 (444)
T PRK15115 258 RPLGSNRDIDIDVRIISATHR--DLPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR 334 (444)
T ss_pred EeCCCCceeeeeEEEEEeCCC--CHHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCC
Confidence 00000111125788888875 232222 2234411 2344445554543 344555442 22 2
Q ss_pred cCCHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001491 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 760 ~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
.++++++..+..+....+.++|++++++++..
T Consensus 335 ~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 335 AFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 47899999999998777899999999998754
No 401
>PRK08181 transposase; Validated
Probab=98.35 E-value=1e-06 Score=97.40 Aligned_cols=100 Identities=22% Similarity=0.371 Sum_probs=65.3
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccc-cHHHHHHHHHHHhcCCCeEEEEecCCccCCCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~-se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r 953 (1068)
+.+++|+||||||||+||.++|..+ |..++.++..+++..+... .+....+.+... .++.+|+|||++.....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC-
Confidence 3579999999999999999999754 8889999998988765322 112333444443 34569999999986421
Q ss_pred CCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 954 ~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
+.....|...++..... . -+|.|||.+
T Consensus 183 --------~~~~~~Lf~lin~R~~~-~-s~IiTSN~~ 209 (269)
T PRK08181 183 --------QAETSVLFELISARYER-R-SILITANQP 209 (269)
T ss_pred --------HHHHHHHHHHHHHHHhC-C-CEEEEcCCC
Confidence 22334444444422222 2 355688865
No 402
>PF13173 AAA_14: AAA domain
Probab=98.34 E-value=1.9e-06 Score=84.74 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
+.++|+||.|+||||+++.+++.+. ....+.++++.+.......... +.+.+......++.++||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~-- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP-- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc--
Confidence 4589999999999999999998875 1256778887775542211111 2233333222366799999998872
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCC----ChhhhcCCcccccccCCCCCHHH
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI----PQSLTSSGRFDFHVQLPAPAASE 745 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L----~~aL~~~gRF~~~i~l~~P~~~e 745 (1068)
.+...+..+.+... ++.+|.|+.....+ ...+. ||.. .+++.|.+..|
T Consensus 75 --------------~~~~~lk~l~d~~~----------~~~ii~tgS~~~~l~~~~~~~l~--gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 --------------DWEDALKFLVDNGP----------NIKIILTGSSSSLLSKDIAESLA--GRVI-EIELYPLSFRE 126 (128)
T ss_pred --------------cHHHHHHHHHHhcc----------CceEEEEccchHHHhhcccccCC--CeEE-EEEECCCCHHH
Confidence 23344444444321 24455555443333 23333 3665 67888887765
No 403
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.34 E-value=1.3e-06 Score=95.22 Aligned_cols=100 Identities=16% Similarity=0.257 Sum_probs=65.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccc---cHHHHHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~---se~~l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
.+++|+|+||||||+||.++|..+ |..++.++.+++...+.+. .+.....++.... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 489999999999999999999887 7888889998888654332 1122334554433 46799999998863
Q ss_pred CCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
.+.+...++.+++.. +......+|.|||..
T Consensus 176 ----~s~~~~~~l~~Ii~~----Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 176 ----ESRYEKVIINQIVDR----RSSSKRPTGMLTNSN 205 (244)
T ss_pred ----CCHHHHHHHHHHHHH----HHhCCCCEEEeCCCC
Confidence 122333344444433 223334455578864
No 404
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.9e-06 Score=97.96 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=92.3
Q ss_pred cccceEEEECCCCCChhHHHHHHHHHcCC-------------------------cEEEEecch---hhhhh-ccccHHHH
Q 001491 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------------------RFISVKGPE---LLNKY-IGASEQAV 926 (1068)
Q Consensus 876 ~~~~~lLL~GppGtGKT~lA~alA~~~g~-------------------------~~i~v~~~e---l~~~~-~g~se~~l 926 (1068)
+.+..+||+||+|+|||++|+.+|+.+-+ +|+.+.... --++. ..-.-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44567999999999999999999988632 233333210 00000 00134567
Q ss_pred HHHHHHHhc----CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCC
Q 001491 927 RDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGR 1002 (1068)
Q Consensus 927 ~~lf~~a~~----~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gR 1002 (1068)
|++.+.+.. ++..|++||+++.+ +....+.|++.|+... .++.+|.+|+.++.+.+.+.+ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 777776643 44569999999998 6788999999998543 456677789999999999887 5
Q ss_pred cceEEEcCCCCHHHHHHHHH
Q 001491 1003 LDRLLFCDFPSPRERLDILK 1022 (1068)
Q Consensus 1003 fd~~i~~~~p~~~~r~~Il~ 1022 (1068)
. ..+.|++|+.++..+.++
T Consensus 164 c-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHH
Confidence 5 457899999888776664
No 405
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.33 E-value=1.9e-05 Score=96.02 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=61.9
Q ss_pred CCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhh------cc----------------------c
Q 001491 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY------IG----------------------A 921 (1068)
Q Consensus 873 ~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~------~g----------------------~ 921 (1068)
.|+..+..++++|+||+|||+++..++... |.+++.+...+-...+ .| .
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCC
Confidence 356677889999999999999997777543 6777766543221110 00 0
Q ss_pred cHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCC
Q 001491 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1068)
Q Consensus 922 se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn 988 (1068)
.+..+..+.......++.+++||-+..+.... ....+..++..|-......++.+|+|..
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~~~~~~~~l~~l~~~~k~~~~t~l~t~~ 407 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLSALARGG-------SLNEFRQFVIRLTDYLKSEEITGLFTNL 407 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------CHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 01223333444455678899999998875321 1122233333333333445666666644
No 406
>PRK06526 transposase; Provisional
Probab=98.33 E-value=8.3e-07 Score=97.48 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=62.0
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccc-cHHHHHHHHHHHhcCCCeEEEEecCCccCCCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~-se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r 953 (1068)
+.+++|+||||||||++|.+++..+ |..+..++..+++...... ....+...+... ..+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC--
Confidence 4589999999999999999998775 7777777777776654221 111222333332 3467999999998732
Q ss_pred CCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 954 ~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
.+...+.|...++..... . .+|.|||.+
T Consensus 174 -------~~~~~~~L~~li~~r~~~-~-s~IitSn~~ 201 (254)
T PRK06526 174 -------EPEAANLFFQLVSSRYER-A-SLIVTSNKP 201 (254)
T ss_pred -------CHHHHHHHHHHHHHHHhc-C-CEEEEcCCC
Confidence 122233333333322222 2 366688876
No 407
>PRK12377 putative replication protein; Provisional
Probab=98.33 E-value=1.4e-06 Score=95.06 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=62.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccH--HHHHHHHHHHhcCCCeEEEEecCCccCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASE--QAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se--~~l~~lf~~a~~~~p~VLfiDEid~l~~~r 953 (1068)
.+++|+||||||||+||.++|+.+ |..++.++.++++..+..... ....+++... ...++|+|||++....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~-- 177 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE-- 177 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC--
Confidence 589999999999999999999887 778888888888765422111 1122334333 3456999999987521
Q ss_pred CCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 954 ~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
+.+ ....|...++.-.. ...-+|.|||..
T Consensus 178 ----s~~---~~~~l~~ii~~R~~-~~~ptiitSNl~ 206 (248)
T PRK12377 178 ----TKN---EQVVLNQIIDRRTA-SMRSVGMLTNLN 206 (248)
T ss_pred ----CHH---HHHHHHHHHHHHHh-cCCCEEEEcCCC
Confidence 222 33344444442222 223345578864
No 408
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.32 E-value=6.6e-06 Score=88.43 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=90.3
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCC------------CCCC
Q 001491 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKI 722 (1068)
Q Consensus 655 ~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~------------~~~L 722 (1068)
-|++|||||+++|- -.-..+|.+.++.- ..++++++ ||+ |+.+
T Consensus 288 vpGVLFIDEvHMLD---------------IEcFsFlNrAlE~d---------~~Piiima-TNrgit~iRGTn~~SphGi 342 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLD---------------IECFSFLNRALEND---------MAPIIIMA-TNRGITRIRGTNYRSPHGI 342 (454)
T ss_pred ccceEEEeeehhhh---------------hHHHHHHHHHhhhc---------cCcEEEEE-cCCceEEeecCCCCCCCCC
Confidence 48899999999882 13445565555431 12455444 443 5667
Q ss_pred ChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhhcccCCc
Q 001491 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 802 (1068)
Q Consensus 723 ~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~r~~~~~~~ 802 (1068)
|-.|.. |.- .+...+++.++..+||+..+....+.++++++..+.......+.+---.|+..+...+.+|-
T Consensus 343 P~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk------ 413 (454)
T KOG2680|consen 343 PIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK------ 413 (454)
T ss_pred cHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc------
Confidence 777777 554 67888999999999999999998999999998888777666565555566666666666652
Q ss_pred cccccccccchhhhhhhhcccc
Q 001491 803 FEKHIKPTLVRDDFSQAMHEFL 824 (1068)
Q Consensus 803 ~~~~~~~~lt~edf~~Al~~~~ 824 (1068)
...+..+|+.++..-|.
T Consensus 414 -----~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 414 -----GKVVEVDDIERVYRLFL 430 (454)
T ss_pred -----CceeehhHHHHHHHHHh
Confidence 24466677777765554
No 409
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.31 E-value=2.5e-06 Score=93.09 Aligned_cols=158 Identities=19% Similarity=0.190 Sum_probs=104.8
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc------EEEEecc
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------FISVKGP 912 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~------~i~v~~~ 912 (1068)
++..+.++.+.+++...+.+....+ .-.|+|+|||||+|||+...+.|..+..+ +.+.+.+
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 3456667777777777666653321 12299999999999999999999887543 1112222
Q ss_pred hhhhhhccccHHHHHHHHHHHhc-------CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEE
Q 001491 913 ELLNKYIGASEQAVRDIFSKATA-------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFA 985 (1068)
Q Consensus 913 el~~~~~g~se~~l~~lf~~a~~-------~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~via 985 (1068)
+-.+ ++ ..+.--..|..++. ..+..+++||+|++ +..+.|+|-+.........++. .
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~t~n~rF~--i 166 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKYTANTRFA--T 166 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHhccceEEE--E
Confidence 1111 11 11222344555543 36789999999998 6788999988776544444444 4
Q ss_pred eCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 986 ATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 986 tTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
-+|.+..+.|++.. |+.+ +.|.+.+...-......+.+.-
T Consensus 167 i~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 167 ISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred eccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcc
Confidence 59999999999987 6665 5788888777777777776554
No 410
>PRK09183 transposase/IS protein; Provisional
Probab=98.31 E-value=1.6e-06 Score=95.73 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=65.7
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccc-cHHHHHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~-se~~l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
.+.+++|+||||||||+||.+++... |..+..++..++...+... ....+..++... ...+++++|||++....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~- 178 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF- 178 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC-
Confidence 34689999999999999999998664 7788888888877554321 112344555543 34567999999987632
Q ss_pred CCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
.....+.|...++...... - +|.|||.+
T Consensus 179 --------~~~~~~~lf~li~~r~~~~-s-~iiTsn~~ 206 (259)
T PRK09183 179 --------SQEEANLFFQVIAKRYEKG-S-MILTSNLP 206 (259)
T ss_pred --------ChHHHHHHHHHHHHHHhcC-c-EEEecCCC
Confidence 2233344454444323222 2 55688865
No 411
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.31 E-value=1.5e-06 Score=86.58 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=57.3
Q ss_pred cchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccch
Q 001491 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG 637 (1068)
Q Consensus 558 G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~ 637 (1068)
|....++++.+++..+.... .+|+|+|++||||+++|+++...... ....++.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~a~~~-------------~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~~---- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSS-------------SPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASLP---- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSS-------------S-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCTC----
T ss_pred CCCHHHHHHHHHHHHHhCCC-------------CcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhCc----
Confidence 56778889999887766533 67999999999999999999886442 22455666776644
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 001491 638 PIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1068)
Q Consensus 638 ~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~ 668 (1068)
.++++. ..++.|||+|+|.+.
T Consensus 62 -------~~~l~~---a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 62 -------AELLEQ---AKGGTLYLKNIDRLS 82 (138)
T ss_dssp -------HHHHHH---CTTSEEEEECGCCS-
T ss_pred -------HHHHHH---cCCCEEEECChHHCC
Confidence 223333 366799999999983
No 412
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.31 E-value=3.1e-06 Score=96.29 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=105.5
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc-------CCcEEE-Eecc-
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFIS-VKGP- 912 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-------g~~~i~-v~~~- 912 (1068)
.+.-+.|++..+..|.-....| .-+++|+.|+.|+|||+++|++|..+ |++|-. -+.+
T Consensus 15 pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred chhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 4566788888887765442222 23689999999999999999999887 222110 0000
Q ss_pred -----------------------hhhhhhccccHHHH------HHHHH----------HHhcCCCeEEEEecCCccCCCC
Q 001491 913 -----------------------ELLNKYIGASEQAV------RDIFS----------KATAAAPCLLFFDEFDSIAPKR 953 (1068)
Q Consensus 913 -----------------------el~~~~~g~se~~l------~~lf~----------~a~~~~p~VLfiDEid~l~~~r 953 (1068)
.+++.=.|.++..+ .+..+ -|+++ ..||+|||+..|
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL---- 156 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL---- 156 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc----
Confidence 01111134444422 11111 01222 239999999998
Q ss_pred CCCCCCcchHHHHHHHHhccCc-----------cccCcEEEEEeCCCCC-CCChhhcCCCCcceEEEcCCC-CHHHHHHH
Q 001491 954 GHDNTGVTDRVVNQFLTELDGV-----------EVLTGVFVFAATSRPD-LLDAALLRPGRLDRLLFCDFP-SPRERLDI 1020 (1068)
Q Consensus 954 ~~~~~~~~~~~~~~lL~~Ld~~-----------~~~~~v~viatTn~~d-~ld~al~r~gRfd~~i~~~~p-~~~~r~~I 1020 (1068)
.+.+++.||..+... ...-++++|+|+|-.+ .|-|.|+. ||...|....| +.++|.+|
T Consensus 157 -------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 157 -------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred -------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHH
Confidence 789999999888642 1223689999999654 38888888 99999999777 58899999
Q ss_pred HHHHHHh
Q 001491 1021 LKVISRK 1027 (1068)
Q Consensus 1021 l~~~l~~ 1027 (1068)
.+..+.-
T Consensus 228 i~r~~~f 234 (423)
T COG1239 228 IRRRLAF 234 (423)
T ss_pred HHHHHHh
Confidence 9877654
No 413
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.31 E-value=2.1e-05 Score=93.17 Aligned_cols=56 Identities=25% Similarity=0.210 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCC
Q 001491 927 RDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDL 992 (1068)
Q Consensus 927 ~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ 992 (1068)
|-.+.+|.+..|.+|+.||.-+.. ...+..+.+..|..+...-++..++.|+..+.
T Consensus 437 RvaIARALa~~P~lli~DEp~SaL----------Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v 492 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSAL----------DVSVQAQVLNLLKDLQEELGLTYLFISHDLAV 492 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCcccc----------CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 445567778899999999988764 44556666666665566666667777876543
No 414
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.31 E-value=2.6e-06 Score=96.87 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=63.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccc---cHHHHHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~---se~~l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
.+++|+|++|||||+||.++|+.+ |..++.++..+++..+... ........+.... ..++|+|||++....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC-
Confidence 689999999999999999999987 8889999998887754221 1111122233332 346999999987631
Q ss_pred CCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
.......|...++.....+.- +|.|||.+
T Consensus 261 --------t~~~~~~Lf~iin~R~~~~k~-tIiTSNl~ 289 (329)
T PRK06835 261 --------TEFSKSELFNLINKRLLRQKK-MIISTNLS 289 (329)
T ss_pred --------CHHHHHHHHHHHHHHHHCCCC-EEEECCCC
Confidence 233344555555433333333 44577753
No 415
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.31 E-value=6.9e-06 Score=100.99 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=62.9
Q ss_pred cEEEEEecCCC--CCCChhhhcCCccc---ccccCC---CCCHHHHHHHHHHH---Hhhc--cccCCHHHHHHHhhcc--
Q 001491 709 PIAFVASAQSL--EKIPQSLTSSGRFD---FHVQLP---APAASERKAILEHE---IQRR--SLECSDEILLDVASKC-- 773 (1068)
Q Consensus 709 ~V~vIattn~~--~~L~~aL~~~gRF~---~~i~l~---~P~~~er~~IL~~~---l~~~--~l~~~~~~l~~la~~t-- 773 (1068)
++.+|+++|.. ..+++.|++ ||. ..+.++ +.+.+.+.++.+.. ++.. ...++++.+..+.+..
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57899999874 568999999 887 444443 33456665555443 3333 2347787766665321
Q ss_pred -CC------CCchhHHHHHHHHHHHHHhhhcccCCccccccccccchhhhhhhhcc
Q 001491 774 -DG------YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1068)
Q Consensus 774 -~g------~s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~~~lt~edf~~Al~~ 822 (1068)
.| .+.++|..+++.|...|..+ ....++.+|+.+|++.
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~-----------~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS-----------GKVYVTAEHVLKAKKL 390 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc-----------CCceecHHHHHHHHHH
Confidence 11 23578899998885444322 2246888999887654
No 416
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.30 E-value=1.7e-06 Score=95.17 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=65.7
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhccccHH-HHHHHHHHHhcCCCeEEEEecCCccCCC
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~se~-~l~~lf~~a~~~~p~VLfiDEid~l~~~ 952 (1068)
.+.+++|+||||+|||+||.|+|+.+ |..+..++.++++......... ....-+.+. -....+|+|||+...-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~-- 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP-- 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc--
Confidence 35689999999999999999999887 8899999999998765432221 111112221 1234599999998862
Q ss_pred CCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 953 r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
. +....+.+.+.+......... +.|||.+
T Consensus 181 ----~---~~~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 181 ----F---SQEEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred ----C---CHHHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 1 222334444444433333333 7789975
No 417
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.30 E-value=1e-05 Score=99.59 Aligned_cols=51 Identities=31% Similarity=0.378 Sum_probs=43.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCc
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~ 905 (1068)
...++++.|+++++..+...+.. +.+++|+||||||||++++++|+.++.+
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 36788999999999988877652 2489999999999999999999998654
No 418
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.3e-07 Score=105.32 Aligned_cols=148 Identities=21% Similarity=0.272 Sum_probs=88.9
Q ss_pred CCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC----CcEEEEe-----c
Q 001491 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS----LRFISVK-----G 911 (1068)
Q Consensus 841 ~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g----~~~i~v~-----~ 911 (1068)
..+.|+.|++..|+.+..... -+.|+||+||||||||++|+-+...+- -..++++ .
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 578999999999999887654 235899999999999999988776541 0111111 0
Q ss_pred chhhhh----------hccccHHHHHHHHHHHhc--------CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhcc
Q 001491 912 PELLNK----------YIGASEQAVRDIFSKATA--------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1068)
Q Consensus 912 ~el~~~----------~~g~se~~l~~lf~~a~~--------~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld 973 (1068)
+++.++ ..+.+. ....+.-.-.. ....||||||+-.+ .+.+++.|.+-|+
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsa-S~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef-----------~~~iLe~LR~PLE 308 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSA-SLAALVGGGGVPRPGEISLAHNGVLFLDELPEF-----------KRSILEALREPLE 308 (490)
T ss_pred ccccccCccceeCCccCCCccc-hHHHHhCCCCCCCCCceeeecCCEEEeeccchh-----------hHHHHHHHhCccc
Confidence 111110 001100 11111110000 11249999999876 6788999998886
Q ss_pred Ccc-----------ccCcEEEEEeCCCC-----------------------CCCChhhcCCCCcceEEEcCCCCHHHH
Q 001491 974 GVE-----------VLTGVFVFAATSRP-----------------------DLLDAALLRPGRLDRLLFCDFPSPRER 1017 (1068)
Q Consensus 974 ~~~-----------~~~~v~viatTn~~-----------------------d~ld~al~r~gRfd~~i~~~~p~~~~r 1017 (1068)
.-. ...++..+++||-- +.|.-.|++ |||..++++.++..++
T Consensus 309 ~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~ 384 (490)
T COG0606 309 NGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGEL 384 (490)
T ss_pred cCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHh
Confidence 421 12246677777721 124455555 9999998888775444
No 419
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.27 E-value=1.9e-06 Score=102.76 Aligned_cols=123 Identities=22% Similarity=0.315 Sum_probs=80.8
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcC----CcEEEEe------cc-----hh-----hh--------hhccccHHHHHH
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACS----LRFISVK------GP-----EL-----LN--------KYIGASEQAVRD 928 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g----~~~i~v~------~~-----el-----~~--------~~~g~se~~l~~ 928 (1068)
.+.+++|+||+|||||++++.++..+. -..+++. +. .+ .. ..+|.....-..
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG 288 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence 346899999999999999999997652 1122211 10 00 00 012221111123
Q ss_pred HHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-----------ccCcEEEEEeCCCCC------
Q 001491 929 IFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRPD------ 991 (1068)
Q Consensus 929 lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----------~~~~v~viatTn~~d------ 991 (1068)
.+..|..+ +||+||++.+ .+.++..|++.|+.-. ...++.+|+|+|...
T Consensus 289 ~l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~ 354 (506)
T PRK09862 289 EISLAHNG---VLFLDELPEF-----------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQG 354 (506)
T ss_pred HhhhccCC---EEecCCchhC-----------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCC
Confidence 45555554 9999999887 5688888888885322 123588999998642
Q ss_pred ---------------CCChhhcCCCCcceEEEcCCCCHH
Q 001491 992 ---------------LLDAALLRPGRLDRLLFCDFPSPR 1015 (1068)
Q Consensus 992 ---------------~ld~al~r~gRfd~~i~~~~p~~~ 1015 (1068)
.|..+++. |||-.+.+++|+.+
T Consensus 355 ~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 355 NHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 36778888 99999999999765
No 420
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.26 E-value=2.4e-06 Score=96.37 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=65.3
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhcccc-HHHHHHHHHHHhcCCCeEEEEecCCccCCCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~s-e~~l~~lf~~a~~~~p~VLfiDEid~l~~~r 953 (1068)
..+++|+|++|||||+||.++|+.+ |..+..+..++++..+.... ...+.+.+... ....+|+|||++.-.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e~--- 230 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAEQ--- 230 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCcc---
Confidence 4689999999999999999999988 88888888888876643221 11233444443 345699999998742
Q ss_pred CCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 954 ~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
. ++-....++..+-..+.......|.|||.+
T Consensus 231 ---~---s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 ---M---SSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred ---c---cHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 1 222333344333111222344566689864
No 421
>PF13173 AAA_14: AAA domain
Probab=98.26 E-value=5.2e-06 Score=81.63 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=71.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC--CcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD 956 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~g--~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~ 956 (1068)
..++++||.|||||++++.+++.+. .+++.++..+.........+ +.+.+.+.....+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4689999999999999999998876 78888887665442111111 3334433322356799999999871
Q ss_pred CCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChh--hcCCCCcceEEEcCCCCHHH
Q 001491 957 NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAA--LLRPGRLDRLLFCDFPSPRE 1016 (1068)
Q Consensus 957 ~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~a--l~r~gRfd~~i~~~~p~~~~ 1016 (1068)
.....+-...| ...++-|+.|++....+... -.-+||.. .+.+.|.+..|
T Consensus 75 ------~~~~~lk~l~d---~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVD---NGPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHH---hccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 22222222222 11344555565544443221 11236875 47888888765
No 422
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.26 E-value=3.5e-06 Score=104.83 Aligned_cols=165 Identities=14% Similarity=0.154 Sum_probs=98.3
Q ss_pred CCCchhHHHHHHHHHHhccC-Cchh---h----hhhCCccccceEEEECCCCCChhHHHHHHHHHcC-------CcEEEE
Q 001491 845 DVGGLTDIQNAIKEMIELPS-KFPN---I----FAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISV 909 (1068)
Q Consensus 845 ~i~gl~~~k~~l~e~i~~~~-~~~~---~----~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g-------~~~i~v 909 (1068)
.+.|.+.+|+.+.-.+--.. +... . +....+|...|+||+|.||||||.+|+++++... ..+..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 45677788877754432221 1100 0 0112345567999999999999999999998653 233333
Q ss_pred ecchhhhhhccc-cHHHH--HHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc----------
Q 001491 910 KGPELLNKYIGA-SEQAV--RDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------- 976 (1068)
Q Consensus 910 ~~~el~~~~~g~-se~~l--~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~---------- 976 (1068)
.+..... +.+. +.... ...+..| ...+++|||++.+ .......|+..|+.-.
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCcce
Confidence 2222111 0000 00000 0111112 2349999999998 5667788888885321
Q ss_pred -ccCcEEEEEeCCCCC-------------CCChhhcCCCCcceEEE-cCCCCHHHHHHHHHHHHH
Q 001491 977 -VLTGVFVFAATSRPD-------------LLDAALLRPGRLDRLLF-CDFPSPRERLDILKVISR 1026 (1068)
Q Consensus 977 -~~~~v~viatTn~~d-------------~ld~al~r~gRfd~~i~-~~~p~~~~r~~Il~~~l~ 1026 (1068)
-..++.||||+|... .|+++++. |||-++. .+.|+.+.=..|.+++++
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 123688999999631 16799998 9998754 477787766677666664
No 423
>PF05729 NACHT: NACHT domain
Probab=98.26 E-value=5.8e-06 Score=84.19 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=81.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCCcee---eeEEEEecccccccchh-hHHHHHHH------------HHHHHHhcC
Q 001491 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLV---AHIVFVCCSRLSLEKGP-IIRQALSN------------FISEALDHA 655 (1068)
Q Consensus 592 ~vLL~GppGtGKTtLaraLA~~L~~~~~~~---~~~~~i~~s~l~~~~~~-~~~~~l~~------------~f~~a~~~~ 655 (1068)
-++|+|+||+|||++++.++..+....... ..++++.+......... .+...+.. +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 389999999999999999999887554322 34555665554432211 12211111 111222345
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCC--CChhhhcCCccc
Q 001491 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD 733 (1068)
Q Consensus 656 PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~--L~~aL~~~gRF~ 733 (1068)
..+++||.+|.+...... .....+...+..++..... .++.++.++++... +...+.. .
T Consensus 82 ~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~~~~--------~~~~liit~r~~~~~~~~~~~~~---~- 142 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQALP--------PGVKLIITSRPRAFPDLRRRLKQ---A- 142 (166)
T ss_pred ceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhhccC--------CCCeEEEEEcCChHHHHHHhcCC---C-
Confidence 568999999999631111 1112344445555544111 12455555544222 2222222 1
Q ss_pred ccccCCCCCHHHHHHHHHHHHhh
Q 001491 734 FHVQLPAPAASERKAILEHEIQR 756 (1068)
Q Consensus 734 ~~i~l~~P~~~er~~IL~~~l~~ 756 (1068)
..+.+++.+.+++.++++.+++.
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhhc
Confidence 35789999999999999987753
No 424
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.23 E-value=1.5e-05 Score=85.56 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=49.1
Q ss_pred CCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCC-------------CCCCChhhcCCCCc
Q 001491 937 APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR-------------PDLLDAALLRPGRL 1003 (1068)
Q Consensus 937 ~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~-------------~d~ld~al~r~gRf 1003 (1068)
-|.||||||++.+ .-+.+.-|-+.|+ +.-.-+||++||+ |.-|++.|+. |+
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl 359 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL 359 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he
Confidence 3678999998887 3334444444443 3333456667775 3347777877 65
Q ss_pred ceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 1004 DRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 1004 d~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
-+|..-+++.++.++|++.-++.-
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E 383 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVE 383 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhh
Confidence 356777888999999998876653
No 425
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.23 E-value=1.1e-06 Score=91.40 Aligned_cols=100 Identities=19% Similarity=0.365 Sum_probs=61.2
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhcccc-HHHHHHHHHHHhcCCCeEEEEecCCccCCCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~g~s-e~~l~~lf~~a~~~~p~VLfiDEid~l~~~r 953 (1068)
+.+++|+||+|||||+||.++++.+ |..+..++.++++..+-... .....+.+..... ..+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~--- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP--- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee---
Confidence 4689999999999999999999776 88999999999987653221 1223344444432 3599999997642
Q ss_pred CCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 954 ~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
..+.....|...++.-.. +.- .|.|||..
T Consensus 122 ------~~~~~~~~l~~ii~~R~~-~~~-tIiTSN~~ 150 (178)
T PF01695_consen 122 ------LSEWEAELLFEIIDERYE-RKP-TIITSNLS 150 (178)
T ss_dssp --------HHHHHCTHHHHHHHHH-T-E-EEEEESS-
T ss_pred ------ecccccccchhhhhHhhc-ccC-eEeeCCCc
Confidence 123334444444443333 233 44488854
No 426
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.22 E-value=1.6e-06 Score=103.68 Aligned_cols=172 Identities=18% Similarity=0.218 Sum_probs=102.3
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhc-----cccH-------HHHHHHHHHHhcCCCeEEE
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASE-------QAVRDIFSKATAAAPCLLF 942 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~-----g~se-------~~l~~lf~~a~~~~p~VLf 942 (1068)
..+++++|++||||+++|+++.... +.+|+.+++..+..... |... ......|..| ...+||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEE
Confidence 3579999999999999999998876 46899999877632211 1000 0011122223 345999
Q ss_pred EecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--cc-------CcEEEEEeCCCC-------CCCChhhcCCCCcceE
Q 001491 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL-------TGVFVFAATSRP-------DLLDAALLRPGRLDRL 1006 (1068)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--~~-------~~v~viatTn~~-------d~ld~al~r~gRfd~~ 1006 (1068)
|||++.+ ...++..|+..++.-. .. .++-+|+||+.. ..+.+.|.. |+..
T Consensus 239 l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~- 304 (445)
T TIGR02915 239 LDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAE- 304 (445)
T ss_pred EechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhcc-
Confidence 9999998 5678888888886321 11 146788888764 234444443 4432
Q ss_pred EEcCCCCHHHHHH----HHHHHHHhhccC-CCCCchhhHHHHHHHHHhhhhhcccccccccccccc
Q 001491 1007 LFCDFPSPRERLD----ILKVISRKVCDT-SIPFSSLFCNELLICKLWHFFMCVSLNLSSYIIFCF 1067 (1068)
Q Consensus 1007 i~~~~p~~~~r~~----Il~~~l~~~~~~-~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1067 (1068)
+.+..|...+|.+ +++.++++.... ..... -...+++..-..+...+|..+|.++++.++
T Consensus 305 ~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~-~~~~~a~~~L~~~~wpgNvreL~~~i~~a~ 369 (445)
T TIGR02915 305 ISITIPPLRSRDGDAVLLANAFLERFARELKRKTK-GFTDDALRALEAHAWPGNVRELENKVKRAV 369 (445)
T ss_pred ceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 4566677666664 555555554221 11100 113333333334555777888888877654
No 427
>PRK06921 hypothetical protein; Provisional
Probab=98.21 E-value=5.4e-06 Score=91.85 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=47.7
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc----CCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCc
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDS 948 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~----g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~ 948 (1068)
..+++|+|++|+|||+|+.++|+.+ |..++.+...+++..+.... ......+... ...++|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 4689999999999999999999875 67778888777765432211 1222233332 3456999999954
No 428
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.17 E-value=1.3e-05 Score=91.23 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=60.3
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCcccCCCcEEEEEecCCCC-CCChhhhcCC
Q 001491 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1068)
Q Consensus 656 PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-~L~~aL~~~g 730 (1068)
.+||++||++.|. .++...|++.+..-. ..+-......++++|||+|+.+ .|-+.|+.
T Consensus 145 RGIlYvDEvnlL~---------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD-- 207 (423)
T COG1239 145 RGILYVDEVNLLD---------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD-- 207 (423)
T ss_pred CCEEEEecccccc---------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--
Confidence 3599999998884 277777777776521 1111122223799999999954 57888888
Q ss_pred cccccccCCCC-CHHHHHHHHHHHHhh
Q 001491 731 RFDFHVQLPAP-AASERKAILEHEIQR 756 (1068)
Q Consensus 731 RF~~~i~l~~P-~~~er~~IL~~~l~~ 756 (1068)
||...+.+..| +.++|.+|+++.+..
T Consensus 208 Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 208 RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 99999988666 668999999876654
No 429
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=98.16 E-value=2.4e-05 Score=80.14 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=111.1
Q ss_pred cceeeCCHHHHHHHhhccccCCCCceEEEEEEeC-CCCeEEEEecCCcCCCCceeecHhHHhhcCCCCCCEEEEEEeecC
Q 001491 13 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSR-SNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNV 91 (1068)
Q Consensus 13 ~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~-~~~~~~~~w~g~~s~~~~iei~~~~a~~~gl~~~~~v~~~~~~~~ 91 (1068)
+.=|-||++..+.|.+.+.. .-+..+|+.. .++.+|+|=-..++..++|-+.+-+.+.|||++|+.|.|+ ..+.
T Consensus 25 gdKiiLP~s~L~~L~~~~~~----~P~~F~i~n~~~~~~th~GVlEFsA~eG~i~lP~wmm~~L~l~~g~~V~v~-~~~L 99 (176)
T PF03152_consen 25 GDKIILPPSALDELSRLNIP----YPMLFEISNPDNGKRTHCGVLEFSAEEGTIYLPPWMMQNLGLQEGDIVRVE-YVSL 99 (176)
T ss_dssp TTEEEE-HHHHHHHHHTT------SS-EEEEEETTTTEEEEEEEEEE--CTTEEEE-CHHHHHHT--TTEEEEEE-EEE-
T ss_pred CCeEEcCHHHHHHHHhccCC----CCEEEEEecCCCCcEEEEEEEEeEcCCCeEEeCccHHhhcCCCCCCEEEEE-EeEC
Confidence 34578999999999986542 3467788765 4467999977777777899999999999999999999999 5799
Q ss_pred ccceEEEEecCCCchhHHHHhcHHHHHHHHhcccceecCCCEEeEEecCceEEEEEEeccCCCCCeEEecCCCEEEEec
Q 001491 92 LKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAP 170 (1068)
Q Consensus 92 ~~~~~v~veP~t~dDwEi~e~~a~~le~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~l~~~tev~vap 170 (1068)
|.++.|.+.|.+.+=.+ |+-+-..||.+| .+--+++.|.++.+.- ++..-.|.|..+.|+..+..+..|-||=++|
T Consensus 100 Pkgt~vkLqP~~~~F~~-i~n~KavLE~~L-r~ystLT~Gd~I~i~~-~~~~y~l~V~e~kP~~aV~IidTDl~vDf~~ 175 (176)
T PF03152_consen 100 PKGTFVKLQPQSSDFLD-ISNPKAVLERAL-RNYSTLTKGDTISIEY-NNKTYELDVVEVKPENAVSIIDTDLEVDFEP 175 (176)
T ss_dssp ---SEEEEEESCHHHHC-SS-HHHHHHHHH-CC-SEEETTSEEEEEC-TTEEEEEEEEEECSSSCEE-SSS-SEEEE--
T ss_pred CCCCEEEEeECCCcccc-ccchHHHHHhhc-ccCceeecCCEEEEEe-CCEEEEEEEEEEcCCCEEEEEeCceEEEecC
Confidence 99999999999875334 556667799999 8899999999999996 5667799999999999888999999887765
No 430
>PRK08116 hypothetical protein; Validated
Probab=98.16 E-value=7.1e-06 Score=91.06 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=45.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhH----HHHHHHHHHHHHhcCCeEEEEccch
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII----RQALSNFISEALDHAPSIVIFDNLD 665 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~----~~~l~~~f~~a~~~~PsILfIDEiD 665 (1068)
+.+++|+|++|||||+||.++++++.... ..+++++..++........ .....+++... ....+|+|||+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg 188 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLG 188 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEeccc
Confidence 35799999999999999999999986432 4567777655432211110 01111222222 345699999985
Q ss_pred h
Q 001491 666 S 666 (1068)
Q Consensus 666 ~ 666 (1068)
.
T Consensus 189 ~ 189 (268)
T PRK08116 189 A 189 (268)
T ss_pred C
Confidence 4
No 431
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.15 E-value=7.3e-06 Score=98.16 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=33.9
Q ss_pred cccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001491 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1068)
Q Consensus 552 ~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~ 615 (1068)
.|.++.|....+..+ ... ...+.+++|+||||||||++++.++..+.
T Consensus 190 d~~dv~Gq~~~~~al----~~a-------------a~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 190 DLKDIKGQQHAKRAL----EIA-------------AAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CHHHhcCcHHHHhhh----hhh-------------ccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 567788876654432 222 22346799999999999999999998654
No 432
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.11 E-value=7.8e-05 Score=89.68 Aligned_cols=201 Identities=15% Similarity=0.266 Sum_probs=106.4
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEE-eccc
Q 001491 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV-CCSR 631 (1068)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i-~~s~ 631 (1068)
+.+|.-...-++++.+.+...+.. ..+.+-+||+||+|||||++++.||++++-. +..- +...
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~----------~~~~~iLlLtGP~G~GKtttv~~La~elg~~------v~Ew~np~~ 81 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSG----------SSPKRILLLTGPSGCGKTTTVKVLAKELGFE------VQEWINPVS 81 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhcc----------CCCcceEEEECCCCCCHHHHHHHHHHHhCCe------eEEecCCCC
Confidence 345555667788888888654321 2233568999999999999999999999732 1111 1111
Q ss_pred ----------cccc--chh---hHHHHHHHH-HHHHHh-----------cCCeEEEEccchhhhcCCCCCCCCCCchhHH
Q 001491 632 ----------LSLE--KGP---IIRQALSNF-ISEALD-----------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 684 (1068)
Q Consensus 632 ----------l~~~--~~~---~~~~~l~~~-f~~a~~-----------~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~ 684 (1068)
+.+. ..+ .....+.++ +..+.. ..+.||+|||+=.++. ... .
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~----------~~~-~ 150 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH----------RDT-S 150 (519)
T ss_pred ccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc----------hhH-H
Confidence 0000 000 011122222 111111 2456999999865431 111 2
Q ss_pred HHHHHHHHHHHhhccccCcccCCCcEEEEEe-cCC------CC--------CCChhhhcCCcccccccCCCCCHHHHHHH
Q 001491 685 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS-AQS------LE--------KIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (1068)
Q Consensus 685 ~l~~~L~~~ld~~~~~~~~~~~~~~V~vIat-tn~------~~--------~L~~aL~~~gRF~~~i~l~~P~~~er~~I 749 (1068)
.+...|...+.. ... .++++|.+ +.. .. -+++.+....+.. +|.|.+-...-....
T Consensus 151 ~f~~~L~~~l~~----~~~----~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKa 221 (519)
T PF03215_consen 151 RFREALRQYLRS----SRC----LPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKA 221 (519)
T ss_pred HHHHHHHHHHHc----CCC----CCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHH
Confidence 444444443332 111 05666666 211 11 2455555533433 678888888777777
Q ss_pred HHHHHhhc-----c-ccCC--HHHHHHHhhccCCCCchhHHHHHHHHHHHHH
Q 001491 750 LEHEIQRR-----S-LECS--DEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1068)
Q Consensus 750 L~~~l~~~-----~-l~~~--~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~ 793 (1068)
|+..+... + ...+ ...++.|+..+.| ||+..+......+.
T Consensus 222 L~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 222 LKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 77665543 1 1222 3357888877554 77776655444443
No 433
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.11 E-value=1.4e-05 Score=96.36 Aligned_cols=172 Identities=19% Similarity=0.223 Sum_probs=104.6
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhh-----ccccHH-------HHHHHHHHHhcCCCeEEE
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASEQ-------AVRDIFSKATAAAPCLLF 942 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~-----~g~se~-------~l~~lf~~a~~~~p~VLf 942 (1068)
...+++.|++|||||++|+++.... +.+|+.+++..+.... .|.... .....|..| ....||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEE
Confidence 3579999999999999999999886 4689999997763211 111100 001112222 234899
Q ss_pred EecCCccCCCCCCCCCCcchHHHHHHHHhccCccc---------cCcEEEEEeCCCC-------CCCChhhcCCCCcceE
Q 001491 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATSRP-------DLLDAALLRPGRLDRL 1006 (1068)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~---------~~~v~viatTn~~-------d~ld~al~r~gRfd~~ 1006 (1068)
|||++.+ .......|+..|+.... .-.+-||+||+.. ..+.+.|.. ||..
T Consensus 238 l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~- 303 (469)
T PRK10923 238 LDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNV- 303 (469)
T ss_pred EeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhcc-
Confidence 9999998 56778888888764221 1246788888753 234455655 6632
Q ss_pred EEcCCCCHHHH----HHHHHHHHHhhccC-CCCCchhhHHHHHHHHHhhhhhcccccccccccccc
Q 001491 1007 LFCDFPSPRER----LDILKVISRKVCDT-SIPFSSLFCNELLICKLWHFFMCVSLNLSSYIIFCF 1067 (1068)
Q Consensus 1007 i~~~~p~~~~r----~~Il~~~l~~~~~~-~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1067 (1068)
+.+..|...+| ..+++.++++.... ....- -...+++..-..+.+.+|..+|.++++.++
T Consensus 304 ~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~-~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~ 368 (469)
T PRK10923 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAK-LLHPETEAALTRLAWPGNVRQLENTCRWLT 368 (469)
T ss_pred eeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCC-CcCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 44455554444 45666666655221 11111 124455555566667778888888877654
No 434
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.08 E-value=4.6e-06 Score=83.09 Aligned_cols=85 Identities=25% Similarity=0.378 Sum_probs=58.0
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCC---cEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCC
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSL---RFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~---~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~ 954 (1068)
..++|++|++||||+++|+++....+. .|+.+++.++. .++++.+ ....|||+|+|.+
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L----- 81 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL----- 81 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-----
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----
Confidence 357999999999999999999987754 44444444321 4466665 4449999999999
Q ss_pred CCCCCcchHHHHHHHHhccCccccCcEEEEEeCC
Q 001491 955 HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATS 988 (1068)
Q Consensus 955 ~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn 988 (1068)
.......|+..|.... ..++-+|+++.
T Consensus 82 ------~~~~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 82 ------SPEAQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp -------HHHHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred ------CHHHHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 5677788888876543 33444555544
No 435
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=4.5e-05 Score=84.69 Aligned_cols=126 Identities=13% Similarity=0.192 Sum_probs=80.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCC----------ceeeeEEEEeccccc-ccchhhHHHHHHHHHHHHHhcCCe
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHK----------DLVAHIVFVCCSRLS-LEKGPIIRQALSNFISEALDHAPS 657 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~----------~~~~~~~~i~~s~l~-~~~~~~~~~~l~~~f~~a~~~~Ps 657 (1068)
.+..+||+||+|+||+.+|.++|+.+-... .....+..+....-. .-..+.++...+.+..........
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 346699999999999999999999886421 011223333222111 112344443333332222223345
Q ss_pred EEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCccccccc
Q 001491 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQ 737 (1068)
Q Consensus 658 ILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~ 737 (1068)
|++||++|.+.. .-.+.|+..+++... ++++|..|+.++.+.|.++| |.. .+.
T Consensus 98 v~ii~~ad~mt~---------------~AaNaLLK~LEEPp~---------~~~fiL~~~~~~~ll~TI~S--Rcq-~~~ 150 (290)
T PRK05917 98 IYIIHEADRMTL---------------DAISAFLKVLEDPPQ---------HGVIILTSAKPQRLPPTIRS--RSL-SIH 150 (290)
T ss_pred EEEEechhhcCH---------------HHHHHHHHHhhcCCC---------CeEEEEEeCChhhCcHHHHh--cce-EEE
Confidence 999999999852 445667777887553 47888888899999999999 655 566
Q ss_pred CCCC
Q 001491 738 LPAP 741 (1068)
Q Consensus 738 l~~P 741 (1068)
|+++
T Consensus 151 ~~~~ 154 (290)
T PRK05917 151 IPME 154 (290)
T ss_pred ccch
Confidence 6654
No 436
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.06 E-value=8.4e-05 Score=88.80 Aligned_cols=196 Identities=16% Similarity=0.216 Sum_probs=111.8
Q ss_pred cccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccccc
Q 001491 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1068)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1068)
+.|....+..+.+.+..+.. ....++++|.+||||+++|+++...... ...+++.++|..+...
T Consensus 141 lig~s~~~~~~~~~i~~~~~-------------~~~~vli~ge~g~gk~~~a~~ih~~s~~---~~~~~i~~~c~~~~~~ 204 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-------------SEATVLIHGDSGTGKELVARAIHASSAR---SEKPLVTLNCAALNES 204 (441)
T ss_pred eEecCHHHHHHHHHHhhccC-------------CCCeEEEEecCCCCHHHHHHHHHHcCCC---CCCCeeeeeCCCCCHH
Confidence 45566666666665533322 2366999999999999999999875432 2368999999876532
Q ss_pred chhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--
Q 001491 636 KGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1068)
Q Consensus 636 ~~~~~~~~l~~~f~~---------------a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1068)
. ++. .+|.. .....+++|||||++.+. . .....|...++.-.
T Consensus 205 ~---~~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~-----------~----~~q~~l~~~l~~~~~~ 263 (441)
T PRK10365 205 L---LES---ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS-----------P----MMQVRLLRAIQEREVQ 263 (441)
T ss_pred H---HHH---HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC-----------H----HHHHHHHHHHccCcEE
Confidence 1 111 11111 112346789999999984 1 22333444443211
Q ss_pred cccCcccCCCcEEEEEecCCCCCCChhhhcCCcccc-------cccCCCCCHHH----HHHHHHHHHhh----cc---cc
Q 001491 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAASE----RKAILEHEIQR----RS---LE 760 (1068)
Q Consensus 699 ~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~-------~i~l~~P~~~e----r~~IL~~~l~~----~~---l~ 760 (1068)
..+.......++.+|++|+..- . .+...++|.. .+.+..|...+ ...++++++.. .+ ..
T Consensus 264 ~~~~~~~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (441)
T PRK10365 264 RVGSNQTISVDVRLIAATHRDL--A-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKG 340 (441)
T ss_pred eCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCC
Confidence 0000001112467887776521 1 1122233321 23444444433 34455555443 12 34
Q ss_pred CCHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001491 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 761 ~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
++++++..+..+....+.++|++++++++..
T Consensus 341 ~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 341 FTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred cCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 7899999998888666889999999987754
No 437
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.05 E-value=0.00013 Score=81.16 Aligned_cols=135 Identities=17% Similarity=0.288 Sum_probs=75.9
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC-CcEEE--E-e----cchhhh---hhcccc-----H-HHHHHH---H-HHHhcCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAACS-LRFIS--V-K----GPELLN---KYIGAS-----E-QAVRDI---F-SKATAAA 937 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~g-~~~i~--v-~----~~el~~---~~~g~s-----e-~~l~~l---f-~~a~~~~ 937 (1068)
+.++|+||+|+|||++++.++..+. ..+.. + + ..+++. ...|.. . ...+.+ + .....+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3588999999999999999998875 22221 1 1 111111 111221 1 111222 1 2234567
Q ss_pred CeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--ccCcEEEEEeCCCCCC---CC----hhhcCCCCcceEEE
Q 001491 938 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VLTGVFVFAATSRPDL---LD----AALLRPGRLDRLLF 1008 (1068)
Q Consensus 938 p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--~~~~v~viatTn~~d~---ld----~al~r~gRfd~~i~ 1008 (1068)
+.+|+|||++.+. ......+. .|-... ....+.|+.+ ..++. +. ..+.+ |+...+.
T Consensus 124 ~~vliiDe~~~l~-----------~~~~~~l~-~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 124 RALLVVDEAQNLT-----------PELLEELR-MLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred CeEEEEECcccCC-----------HHHHHHHH-HHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeee
Confidence 7899999999872 23333332 222211 1222333333 33322 11 23444 7778899
Q ss_pred cCCCCHHHHHHHHHHHHHhh
Q 001491 1009 CDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+++.+.++..+++...++..
T Consensus 189 l~~l~~~e~~~~l~~~l~~~ 208 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERA 208 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 99999999999998888755
No 438
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.04 E-value=2.8e-05 Score=76.17 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=46.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCc--eeeeEEEEecccccc----------------cchhhHHHHHHHHHHHH
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCCSRLSL----------------EKGPIIRQALSNFISEA 651 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~--~~~~~~~i~~s~l~~----------------~~~~~~~~~l~~~f~~a 651 (1068)
.+.++++||+|+|||++++.+++.+..... ....++.++|..... .........+..+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 366999999999999999999998742100 015566777644331 00012233333344444
Q ss_pred HhcCCeEEEEccchhhh
Q 001491 652 LDHAPSIVIFDNLDSII 668 (1068)
Q Consensus 652 ~~~~PsILfIDEiD~L~ 668 (1068)
..+...+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 44444699999999973
No 439
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.03 E-value=1.5e-05 Score=95.81 Aligned_cols=171 Identities=20% Similarity=0.231 Sum_probs=100.2
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhh-----ccccHH-------HHHHHHHHHhcCCCeEEE
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASEQ-------AVRDIFSKATAAAPCLLF 942 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~-----~g~se~-------~l~~lf~~a~~~~p~VLf 942 (1068)
..++|++|++||||+++|+++.... +.+|+.+++..+.... .|.... .....|..| ...+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEE
Confidence 3579999999999999999998765 5789999987653221 111000 001123333 234999
Q ss_pred EecCCccCCCCCCCCCCcchHHHHHHHHhccCccc---------cCcEEEEEeCCCC-------CCCChhhcCCCCcceE
Q 001491 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATSRP-------DLLDAALLRPGRLDRL 1006 (1068)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~---------~~~v~viatTn~~-------d~ld~al~r~gRfd~~ 1006 (1068)
|||++.+ .......|+..|+.-.. ..++.||+||+.. ..+.+.+.. |+. .
T Consensus 243 ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~ 308 (457)
T PRK11361 243 LDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-V 308 (457)
T ss_pred EechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-c
Confidence 9999998 56778888888764221 1247888888853 123333332 332 3
Q ss_pred EEcCCCCHHHHHH----HHHHHHHhhccC-CCCCchhhHHHHHHHHHhhhhhccccccccccccc
Q 001491 1007 LFCDFPSPRERLD----ILKVISRKVCDT-SIPFSSLFCNELLICKLWHFFMCVSLNLSSYIIFC 1066 (1068)
Q Consensus 1007 i~~~~p~~~~r~~----Il~~~l~~~~~~-~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1066 (1068)
+.+..|...+|.+ +++.++++.... ...... ...++...-..+...+|..+|.++++.+
T Consensus 309 ~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~-~~~~a~~~L~~~~wpgNv~eL~~~~~~~ 372 (457)
T PRK11361 309 IHLILPPLRDRREDISLLANHFLQKFSSENQRDIID-IDPMAMSLLTAWSWPGNIRELSNVIERA 372 (457)
T ss_pred ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCC-cCHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 5667777776654 444555554221 111111 2344444444555567777777766544
No 440
>PRK15115 response regulator GlrR; Provisional
Probab=98.03 E-value=3e-06 Score=101.36 Aligned_cols=170 Identities=22% Similarity=0.311 Sum_probs=100.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhc-----cccH-------HHHHHHHHHHhcCCCeEEEE
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASE-------QAVRDIFSKATAAAPCLLFF 943 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~-----g~se-------~~l~~lf~~a~~~~p~VLfi 943 (1068)
..++++|++|||||++|+++.... +.+|+.+++..+..... |... .....+|..| ....|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 479999999999999999999886 47899999876532211 1100 0001122222 2349999
Q ss_pred ecCCccCCCCCCCCCCcchHHHHHHHHhccCccc---------cCcEEEEEeCCCCCCCChhhcCCCCcce-------EE
Q 001491 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATSRPDLLDAALLRPGRLDR-------LL 1007 (1068)
Q Consensus 944 DEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~---------~~~v~viatTn~~d~ld~al~r~gRfd~-------~i 1007 (1068)
||+|.+ .......|+..|+.-.. .-++.+|+||+.. ++..+.+ |+|.. .+
T Consensus 235 ~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l~~~ 300 (444)
T PRK15115 235 DEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRLNVV 300 (444)
T ss_pred EccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhhcee
Confidence 999998 56778888888763221 1157888888853 3333332 44421 35
Q ss_pred EcCCCCHHHHHH----HHHHHHHhhccC-CCCCchhhHHHHHHHHHhhhhhccccccccccccc
Q 001491 1008 FCDFPSPRERLD----ILKVISRKVCDT-SIPFSSLFCNELLICKLWHFFMCVSLNLSSYIIFC 1066 (1068)
Q Consensus 1008 ~~~~p~~~~r~~----Il~~~l~~~~~~-~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1066 (1068)
.+..|...+|.+ +++.++++.... ..... -...+++..-..+...+|..+|.++++.+
T Consensus 301 ~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~-~~~~~a~~~L~~~~WpgNvreL~~~i~~~ 363 (444)
T PRK15115 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVR-AFSTDAMKRLMTASWPGNVRQLVNVIEQC 363 (444)
T ss_pred eecCCChHhccccHHHHHHHHHHHHHHHhCCCCC-CcCHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 666777777754 445555554211 11100 12333333333444477888888877764
No 441
>PRK12377 putative replication protein; Provisional
Probab=98.03 E-value=2.6e-05 Score=85.20 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=45.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHH--HHHHHHHHHHHhcCCeEEEEccchhh
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR--QALSNFISEALDHAPSIVIFDNLDSI 667 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~--~~l~~~f~~a~~~~PsILfIDEiD~L 667 (1068)
.+++|+||||||||+||.++|+.+.... ..+.+++..++...-..... ....+.+... ....+|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 5799999999999999999999986432 33455665554432111100 0111222222 46679999999664
No 442
>PF14516 AAA_35: AAA-like domain
Probab=98.02 E-value=0.00038 Score=79.91 Aligned_cols=169 Identities=17% Similarity=0.162 Sum_probs=98.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHH--------------------------
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-------------------------- 642 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~-------------------------- 642 (1068)
++..+.|.||..+|||+++..+.+.+.... ..++++++..+.........+
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~---~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~ 106 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQG---YRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEE 106 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCC---CEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHh
Confidence 346699999999999999999998886432 667788887754322111111
Q ss_pred -----HHHHHHHHH---HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEE
Q 001491 643 -----ALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVA 714 (1068)
Q Consensus 643 -----~l~~~f~~a---~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIa 714 (1068)
.+...|++. ...+|-||+|||+|.++.. ......+...|....+... ....+ ..+.+|.
T Consensus 107 ~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~---------~~~~~dF~~~LR~~~~~~~-~~~~~---~~L~li~ 173 (331)
T PF14516_consen 107 IGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY---------PQIADDFFGLLRSWYEQRK-NNPIW---QKLRLIL 173 (331)
T ss_pred cCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC---------cchHHHHHHHHHHHHHhcc-cCccc---ceEEEEE
Confidence 111122221 1146789999999999731 1112244444444433211 11111 1233333
Q ss_pred ec-CCCCCCChhhhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCCHHHHHHHhhccCCCC
Q 001491 715 SA-QSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1068)
Q Consensus 715 tt-n~~~~L~~aL~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g~s 777 (1068)
+. .........-.++..+...+.++..+.+|...+++. ++...++..++.+-..+.|..
T Consensus 174 ~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 174 AGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHP 233 (331)
T ss_pred ecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCH
Confidence 32 222222122234445556789999999998776654 456677888999999999864
No 443
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.02 E-value=8.4e-05 Score=88.80 Aligned_cols=135 Identities=17% Similarity=0.224 Sum_probs=76.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccc---c---------------cchh-hHHHHHHH---
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS---L---------------EKGP-IIRQALSN--- 646 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~---~---------------~~~~-~~~~~l~~--- 646 (1068)
.+.+++|+||||+|||++++.++..+...... ..+++..+. + ..-. .....+..
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~----e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~ 284 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNE----EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAI 284 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCc----EEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCce
Confidence 45679999999999999999999876522110 111111110 0 0000 00000000
Q ss_pred -HHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCcccCCCcEEEEEecCCCC-
Q 001491 647 -FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE- 720 (1068)
Q Consensus 647 -~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~- 720 (1068)
.-.........+||+||++.+- ..+...|.+.|+.-. ..........++.+|+|+|+..
T Consensus 285 ~~pG~l~~A~gGvLfLDEi~e~~---------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pc 349 (506)
T PRK09862 285 PGPGEISLAHNGVLFLDELPEFE---------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPT 349 (506)
T ss_pred ehhhHhhhccCCEEecCCchhCC---------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccc
Confidence 0011122234699999998763 255666666665422 1111111234689999999842
Q ss_pred --------------------CCChhhhcCCcccccccCCCCCHH
Q 001491 721 --------------------KIPQSLTSSGRFDFHVQLPAPAAS 744 (1068)
Q Consensus 721 --------------------~L~~aL~~~gRF~~~i~l~~P~~~ 744 (1068)
.++.+++. ||+.++.++.|+.+
T Consensus 350 G~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 350 GHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred eecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 35667777 99999999988644
No 444
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.00 E-value=5.8e-05 Score=83.28 Aligned_cols=207 Identities=17% Similarity=0.222 Sum_probs=119.7
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1068)
..|..+++....+..++.+.+.+...+ .++||.|..||||-.+|++....- .....+|..++|.
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlD-------------APLLI~GeTGTGKdLlAkaCH~~S---~R~~~pFlalNCA 264 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLD-------------APLLITGETGTGKDLLAKACHLAS---PRHSKPFLALNCA 264 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccC-------------CCeEEecCCCchHHHHHHHHhhcC---cccCCCeeEeecC
Confidence 346677888888888888776654433 459999999999999999875532 2333789999998
Q ss_pred cccccchhh-H------HHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCc
Q 001491 631 RLSLEKGPI-I------RQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS 703 (1068)
Q Consensus 631 ~l~~~~~~~-~------~~~l~~~f~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~ 703 (1068)
.+.....+. + .+--..+|+.+ ..+-+|+|||..+ +...+.+++++|.+.- +..-+..
T Consensus 265 ~lPe~~aEsElFG~apg~~gk~GffE~A---ngGTVlLDeIgEm-----------Sp~lQaKLLRFL~DGt--FRRVGee 328 (511)
T COG3283 265 SLPEDAAESELFGHAPGDEGKKGFFEQA---NGGTVLLDEIGEM-----------SPRLQAKLLRFLNDGT--FRRVGED 328 (511)
T ss_pred CCchhHhHHHHhcCCCCCCCccchhhhc---cCCeEEeehhhhc-----------CHHHHHHHHHHhcCCc--eeecCCc
Confidence 876432211 0 00011233333 2347999999766 3344455555554321 1111111
Q ss_pred ccCCCcEEEEEecCCCC-------CCChhhhcCCcccccccCCCCCHHHHH----HHHH----HHHhhccc---cCCHHH
Q 001491 704 SCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASERK----AILE----HEIQRRSL---ECSDEI 765 (1068)
Q Consensus 704 ~~~~~~V~vIattn~~~-------~L~~aL~~~gRF~~~i~l~~P~~~er~----~IL~----~~l~~~~l---~~~~~~ 765 (1068)
.....+|.||++|+..- .+...|.- |.. ++.+..|...+|. -+.+ .+..+.+. .++++.
T Consensus 329 ~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~ 405 (511)
T COG3283 329 HEVHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADL 405 (511)
T ss_pred ceEEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHH
Confidence 22234799999987631 11222222 222 3344444443332 2222 33333333 367777
Q ss_pred HHHHhhccCCCCchhHHHHHHHHHHHH
Q 001491 766 LLDVASKCDGYDAYDLEILVDRTVHAA 792 (1068)
Q Consensus 766 l~~la~~t~g~s~~DL~~Lv~~a~~~a 792 (1068)
+..+..+..-.+-+.|++.+-+|+...
T Consensus 406 ~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 406 LTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 888887776667889999888887543
No 445
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.99 E-value=1.4e-05 Score=99.70 Aligned_cols=146 Identities=16% Similarity=0.074 Sum_probs=81.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCC-ceeeeEEEEecccccccchhhHHHHHHHHHH---HHHhcCCeEEEEccc
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFVCCSRLSLEKGPIIRQALSNFIS---EALDHAPSIVIFDNL 664 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~-~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~---~a~~~~PsILfIDEi 664 (1068)
...||||+|+||||||.+|+++++...... .....+..+.|....... +.. -..+.. .......++++|||+
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~-d~~---tG~~~le~GaLvlAdgGtL~IDEi 566 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFN-ESD---NGRAMIQPGAVVLANGGVCCIDEL 566 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhc-ccc---cCcccccCCcEEEcCCCeEEecch
Confidence 345899999999999999999998543110 001122233332221000 000 000000 001123469999999
Q ss_pred hhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCcccCCCcEEEEEecCCCC-------------CCChhhh
Q 001491 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-------------KIPQSLT 727 (1068)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-------------~L~~aL~ 727 (1068)
|.+- . .....|.+.|+.-. ..+....-..++.|||++|+.. .++++|+
T Consensus 567 dkms-----------~----~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 567 DKCH-----------N----ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred hhCC-----------H----HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 9983 1 33444555565321 1111111123689999999852 3678899
Q ss_pred cCCcccccc-cCCCCCHHHHHHHHHHHHh
Q 001491 728 SSGRFDFHV-QLPAPAASERKAILEHEIQ 755 (1068)
Q Consensus 728 ~~gRF~~~i-~l~~P~~~er~~IL~~~l~ 755 (1068)
+ ||+..+ -++.|+.+.=..|.++.+.
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 9 998654 6678887766666666554
No 446
>PRK08181 transposase; Validated
Probab=97.99 E-value=2.9e-05 Score=85.92 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=46.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhH-HHHHHHHHHHHHhcCCeEEEEccchhhh
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDSII 668 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~-~~~l~~~f~~a~~~~PsILfIDEiD~L~ 668 (1068)
..+++|+||||||||+|+.+++.++.... ..+.+++..++........ .......+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 36799999999999999999999874332 3456666555443211100 01122222222 456799999998763
No 447
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.99 E-value=1.4e-05 Score=96.12 Aligned_cols=172 Identities=18% Similarity=0.152 Sum_probs=99.0
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhh-----ccccH----HHH---HHHHHHHhcCCCeEEEE
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASE----QAV---RDIFSKATAAAPCLLFF 943 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~-----~g~se----~~l---~~lf~~a~~~~p~VLfi 943 (1068)
..+++.|.+||||+++|+++.... +.+|+.+++..+.... .|... ... ...|. ....+.|||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFE---QADGGTLFL 234 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEE
Confidence 479999999999999999998875 5689999987653221 11100 000 11122 223458999
Q ss_pred ecCCccCCCCCCCCCCcchHHHHHHHHhccCccc---------cCcEEEEEeCCCC-------CCCChhhcCCCCcce-E
Q 001491 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATSRP-------DLLDAALLRPGRLDR-L 1006 (1068)
Q Consensus 944 DEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~---------~~~v~viatTn~~-------d~ld~al~r~gRfd~-~ 1006 (1068)
||++.+ .......|+..|+.... ..++-||+||+.. ..+.+.|.. |+.. .
T Consensus 235 ~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~ 301 (463)
T TIGR01818 235 DEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIR 301 (463)
T ss_pred EchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcce
Confidence 999998 55667788877753211 1146788888753 123444444 4432 4
Q ss_pred EEcCCCC--HHHHHHHHHHHHHhhccC-CCCCchhhHHHHHHHHHhhhhhcccccccccccccc
Q 001491 1007 LFCDFPS--PRERLDILKVISRKVCDT-SIPFSSLFCNELLICKLWHFFMCVSLNLSSYIIFCF 1067 (1068)
Q Consensus 1007 i~~~~p~--~~~r~~Il~~~l~~~~~~-~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1067 (1068)
|.+++.. .++...+++.++++.... ..... ....+++..-..+...+|..+|.++++.++
T Consensus 302 i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~-~~~~~a~~~L~~~~wpgNvreL~~~~~~~~ 364 (463)
T TIGR01818 302 IHLPPLRERREDIPRLARHFLALAARELDVEPK-LLDPEALERLKQLRWPGNVRQLENLCRWLT 364 (463)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHHHHhCCCCC-CcCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 5555544 345566666666665221 11111 123333333334455666677777666543
No 448
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.97 E-value=0.00012 Score=79.16 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=76.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~L~~~ 670 (1068)
.+..++||+|||||..++.+|+.++ .+++..+|+.... ...+.+.+..+.. ..+.+.+||++.+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG------~~~~vfnc~~~~~--~~~l~ril~G~~~-----~GaW~cfdefnrl--- 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALG------RFVVVFNCSEQMD--YQSLSRILKGLAQ-----SGAWLCFDEFNRL--- 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--------EEEEETTSSS---HHHHHHHHHHHHH-----HT-EEEEETCCCS---
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhC------CeEEEeccccccc--HHHHHHHHHHHhh-----cCchhhhhhhhhh---
Confidence 4567899999999999999999999 8899999988442 2333333333332 2457999999998
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCc-------ccCCCcEEEEEecCC----CCCCChhhhcCCcccccccCC
Q 001491 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS-------SCGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQLP 739 (1068)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~-------~~~~~~V~vIattn~----~~~L~~aL~~~gRF~~~i~l~ 739 (1068)
+.+....+.+.+..+.+........ ..-.....++.|.|+ ...+|+.|+. .|. .+.+.
T Consensus 97 --------~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lFR-pvam~ 165 (231)
T PF12774_consen 97 --------SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LFR-PVAMM 165 (231)
T ss_dssp --------SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TEE-EEE--
T ss_pred --------hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hhh-eeEEe
Confidence 3344445555555555544322111 000113456666664 3468888887 454 78888
Q ss_pred CCCHHHHHHHH
Q 001491 740 APAASERKAIL 750 (1068)
Q Consensus 740 ~P~~~er~~IL 750 (1068)
.||.....+++
T Consensus 166 ~PD~~~I~ei~ 176 (231)
T PF12774_consen 166 VPDLSLIAEIL 176 (231)
T ss_dssp S--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88887655544
No 449
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.97 E-value=6.2e-05 Score=90.52 Aligned_cols=142 Identities=17% Similarity=0.254 Sum_probs=83.6
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhh-------hhhccccH---------HHHHHH-HHHHhc-----
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------NKYIGASE---------QAVRDI-FSKATA----- 935 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~-------~~~~g~se---------~~l~~l-f~~a~~----- 935 (1068)
..-+||+||+|||||++++++|+++|..+.+-..+-.. ..|.+... ....++ +..++.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~ 124 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSM 124 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccc
Confidence 34678899999999999999999999998885433221 11111111 011111 111111
Q ss_pred ------CCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEe-C------CCC--------CCCC
Q 001491 936 ------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA-T------SRP--------DLLD 994 (1068)
Q Consensus 936 ------~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viat-T------n~~--------d~ld 994 (1068)
..+.||+|||+=.++.. . ..+..+.|...+..-... ++++|.| + |.. ..++
T Consensus 125 ~g~~~~~~~kvILVEDlPN~~~~----~---~~~f~~~L~~~l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~ 196 (519)
T PF03215_consen 125 SGSNSSSNKKVILVEDLPNVFHR----D---TSRFREALRQYLRSSRCL-PLVFIISETESLSGDNSYRSNSFTAERLFP 196 (519)
T ss_pred cCCCcCCCceEEEeeccccccch----h---HHHHHHHHHHHHHcCCCC-CEEEEEecccccCCCCcccccchhhhhccC
Confidence 24679999998765421 1 234444455555422211 6777666 1 111 1466
Q ss_pred hhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 995 AALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 995 ~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+.++.-.++ ..|.|.+-.+.-..+-++.++...
T Consensus 197 ~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 197 KEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 777764455 458999999887777777777654
No 450
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.96 E-value=2.6e-05 Score=84.00 Aligned_cols=142 Identities=20% Similarity=0.318 Sum_probs=79.6
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCCc---EEEEec---c------hh-------------hhhh-------------c
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR---FISVKG---P------EL-------------LNKY-------------I 919 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~~---~i~v~~---~------el-------------~~~~-------------~ 919 (1068)
...++++||.|+|||++++.+....... .+.+.. . .+ .... .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 4589999999999999999999988321 111111 0 00 0000 0
Q ss_pred cccHHHHHHHHHHHhcCC-CeEEEEecCCccC-CCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCC----
Q 001491 920 GASEQAVRDIFSKATAAA-PCLLFFDEFDSIA-PKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL---- 993 (1068)
Q Consensus 920 g~se~~l~~lf~~a~~~~-p~VLfiDEid~l~-~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~l---- 993 (1068)
......+..++....... ..||+|||++.+. ... ........|...++......++.+|++++.....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhh
Confidence 122345666666654433 4899999999996 211 1356677777777764455565555554432211
Q ss_pred --ChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 994 --DAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 994 --d~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
...+. +|+.. +.+++.+.++..++++...+..
T Consensus 174 ~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 174 DDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp -TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC
T ss_pred cccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh
Confidence 22233 38877 9999999999999999887765
No 451
>PRK06526 transposase; Provisional
Probab=97.95 E-value=1.3e-05 Score=88.12 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhh-HHHHHHHHHHHHHhcCCeEEEEccchhh
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDSI 667 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~-~~~~l~~~f~~a~~~~PsILfIDEiD~L 667 (1068)
+.+++|+||||||||+||.+++.++.... ..+.++++.++....... ....+...+... ..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 46799999999999999999999875322 233444444332211100 001111222221 45679999999876
No 452
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.95 E-value=5e-05 Score=82.84 Aligned_cols=72 Identities=14% Similarity=0.339 Sum_probs=46.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhH---HHHHHHHHHHHHhcCCeEEEEccchhh
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII---RQALSNFISEALDHAPSIVIFDNLDSI 667 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~---~~~l~~~f~~a~~~~PsILfIDEiD~L 667 (1068)
.+++|+|+||||||+|+.++|.++.... ..+.+++..++........ ......++... ...++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 4799999999999999999999986432 4556666655542211111 01112233332 35779999999775
No 453
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=0.00013 Score=78.23 Aligned_cols=153 Identities=13% Similarity=0.253 Sum_probs=104.4
Q ss_pred CCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHc-C--CcEE-----------
Q 001491 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S--LRFI----------- 907 (1068)
Q Consensus 842 ~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~-g--~~~i----------- 907 (1068)
.++.+.+.++....+..... ... -.|+|+|||+|+||-|.+.++-+++ | ..-.
T Consensus 11 sl~~l~~~~e~~~~Lksl~~-~~d------------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS-TGD------------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc-cCC------------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 44556666666666655433 111 1499999999999999998888876 2 1111
Q ss_pred ---------------EEecchhhhhhccccHH-HHHHHHHHHhcC---------CCeEEEEecCCccCCCCCCCCCCcch
Q 001491 908 ---------------SVKGPELLNKYIGASEQ-AVRDIFSKATAA---------APCLLFFDEFDSIAPKRGHDNTGVTD 962 (1068)
Q Consensus 908 ---------------~v~~~el~~~~~g~se~-~l~~lf~~a~~~---------~p~VLfiDEid~l~~~r~~~~~~~~~ 962 (1068)
+++.++ .|..+. -+.++.+...+. ...|++|-|+|.+ +.
T Consensus 78 ~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----------T~ 141 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----------TR 141 (351)
T ss_pred CceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------hH
Confidence 111111 233332 345565554332 3469999999999 78
Q ss_pred HHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 963 RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 963 ~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.+...|-.-|+... ..+-+|..+|....|=++++. |. -.|.++-|+.++-..++...+++-
T Consensus 142 dAQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE 202 (351)
T KOG2035|consen 142 DAQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKE 202 (351)
T ss_pred HHHHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHh
Confidence 89999999998544 445555568888888889988 43 347899999999999999888775
No 454
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.94 E-value=2.9e-05 Score=76.08 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=54.0
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHc--------CCcEEEEecchhhhh----------h----cc-ccHHHHHHHH-HH
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAAC--------SLRFISVKGPELLNK----------Y----IG-ASEQAVRDIF-SK 932 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~--------g~~~i~v~~~el~~~----------~----~g-~se~~l~~lf-~~ 932 (1068)
.++.++++|++|+|||++++.+++.+ ..+++.++.+...+. + .+ .+...+.+.+ +.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34678999999999999999999987 677787775543311 0 11 1223333333 33
Q ss_pred HhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhcc
Q 001491 933 ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1068)
Q Consensus 933 a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld 973 (1068)
.......+|+|||+|.+. ....++.+...++
T Consensus 83 l~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN 113 (131)
T ss_dssp HHHCTEEEEEEETTHHHH----------THHHHHHHHHHTC
T ss_pred HHhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh
Confidence 344444699999999973 2566677766655
No 455
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.93 E-value=0.00013 Score=78.68 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=48.8
Q ss_pred CeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCC------------CCCCChhhcCCCCcce
Q 001491 938 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR------------PDLLDAALLRPGRLDR 1005 (1068)
Q Consensus 938 p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~------------~d~ld~al~r~gRfd~ 1005 (1068)
|.||||||++.| .-+.+.-|-..++ ....++ ++++||+ |.-|+-.|+. |+ -
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE--~d~~Pi-iimaTNrgit~iRGTn~~SphGiP~D~lD--R~-l 351 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALE--NDMAPI-IIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-L 351 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhh--hccCcE-EEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-h
Confidence 679999999987 2333333334443 223344 4456663 3457777776 65 3
Q ss_pred EEEcCCCCHHHHHHHHHHHHHhh
Q 001491 1006 LLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 1006 ~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+|...+++.++...|++.-+..-
T Consensus 352 II~t~py~~~d~~~IL~iRc~EE 374 (454)
T KOG2680|consen 352 IISTQPYTEEDIKKILRIRCQEE 374 (454)
T ss_pred eeecccCcHHHHHHHHHhhhhhh
Confidence 57788999999999999887664
No 456
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.92 E-value=9.5e-05 Score=82.90 Aligned_cols=159 Identities=19% Similarity=0.324 Sum_probs=83.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH--hccCCceeeeEEEEecccccc--------------c-----chhhHHHHHHHHH
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKS--LEHHKDLVAHIVFVCCSRLSL--------------E-----KGPIIRQALSNFI 648 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~--L~~~~~~~~~~~~i~~s~l~~--------------~-----~~~~~~~~l~~~f 648 (1068)
.+-+.|+|++|+|||+||+.+++. ...... .++.++.+.-.. . ....... ....+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~---~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l 94 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFD---GVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEE-LQDQL 94 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT---EEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHH-HHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccc---ccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 466999999999999999999987 333332 233333322110 1 1112222 22333
Q ss_pred HHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhc
Q 001491 649 SEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS 728 (1068)
Q Consensus 649 ~~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~ 728 (1068)
.......+.+|+|||++... .+ ..+...+.... . +..+|.||.... +......
T Consensus 95 ~~~L~~~~~LlVlDdv~~~~----------------~~-~~l~~~~~~~~---~------~~kilvTTR~~~-v~~~~~~ 147 (287)
T PF00931_consen 95 RELLKDKRCLLVLDDVWDEE----------------DL-EELREPLPSFS---S------GSKILVTTRDRS-VAGSLGG 147 (287)
T ss_dssp HHHHCCTSEEEEEEEE-SHH----------------HH--------HCHH---S------S-EEEEEESCGG-GGTTHHS
T ss_pred hhhhccccceeeeeeecccc----------------cc-ccccccccccc---c------cccccccccccc-ccccccc
Confidence 33444568999999987652 11 11111111111 0 245666766532 2111111
Q ss_pred CCcccccccCCCCCHHHHHHHHHHHHhhcc---ccCCHHHHHHHhhccCCCCchhHHH
Q 001491 729 SGRFDFHVQLPAPAASERKAILEHEIQRRS---LECSDEILLDVASKCDGYDAYDLEI 783 (1068)
Q Consensus 729 ~gRF~~~i~l~~P~~~er~~IL~~~l~~~~---l~~~~~~l~~la~~t~g~s~~DL~~ 783 (1068)
. ...++++..+.++-.+++........ ....++....+++.+.|. |-.+..
T Consensus 148 --~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~ 201 (287)
T PF00931_consen 148 --T-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKL 201 (287)
T ss_dssp --C-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHH
T ss_pred --c-ccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 1 34688999999999999998765443 112234567888888774 443433
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.90 E-value=3.2e-05 Score=78.23 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=63.1
Q ss_pred EEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhh----------------------cccc-H-HHHHHHHHHH
Q 001491 881 VLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----------------------IGAS-E-QAVRDIFSKA 933 (1068)
Q Consensus 881 lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~----------------------~g~s-e-~~l~~lf~~a 933 (1068)
++++|+||+|||+++..++... +.+++.+......... .+.. . ...+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 5666666554332211 0000 1 1112234556
Q ss_pred hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCC
Q 001491 934 TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLL 993 (1068)
Q Consensus 934 ~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~l 993 (1068)
....+.+++|||+..+.+.......+ .+......+..+.......++.+|++++.....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREG-YPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 67788999999999886432110001 122223333333222233467777777765443
No 458
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.89 E-value=5.9e-05 Score=85.91 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=45.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhh-H--HHHHHHHHHHHHhcCCeEEEEccchhh
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-I--RQALSNFISEALDHAPSIVIFDNLDSI 667 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~-~--~~~l~~~f~~a~~~~PsILfIDEiD~L 667 (1068)
.+++|+||+|+|||+|+.++|+++-... ..+.+++..++....... . .......+.. .....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 6799999999999999999999985432 456777776654321110 0 0001111222 235579999999665
No 459
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.87 E-value=7.8e-05 Score=79.66 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=53.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccch-----------------------hhHHH
Q 001491 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-----------------------PIIRQ 642 (1068)
Q Consensus 586 ~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~-----------------------~~~~~ 642 (1068)
|++.+.-++|+||||||||+++..++....... ..++++++..+..... .....
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 566666799999999999999999887764322 4567777765211110 11122
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhhc
Q 001491 643 ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1068)
Q Consensus 643 ~l~~~f~~a~~~~PsILfIDEiD~L~~ 669 (1068)
.+..+...+.+..+.+|+||-+..++.
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 244444445556789999999998863
No 460
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.87 E-value=9.4e-05 Score=73.64 Aligned_cols=133 Identities=20% Similarity=0.282 Sum_probs=73.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcC---CcE-------------------EEEecch------------hhhhh---ccc
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAACS---LRF-------------------ISVKGPE------------LLNKY---IGA 921 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~g---~~~-------------------i~v~~~e------------l~~~~---~g~ 921 (1068)
..+.++|+||+||||++.-+|..+. +++ +.+...+ -+++| +..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 4689999999999999999997762 221 1111000 01222 111
Q ss_pred cHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCC
Q 001491 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPG 1001 (1068)
Q Consensus 922 se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~g 1001 (1068)
.+.-....+++|... .+|++|||+..+= -..+.|...++.....+.. +|||-.+-+. +|-+.+--
T Consensus 86 le~i~~~al~rA~~~-aDvIIIDEIGpME------------lks~~f~~~ve~vl~~~kp-liatlHrrsr-~P~v~~ik 150 (179)
T COG1618 86 LEEIAIPALRRALEE-ADVIIIDEIGPME------------LKSKKFREAVEEVLKSGKP-LIATLHRRSR-HPLVQRIK 150 (179)
T ss_pred HHHHhHHHHHHHhhc-CCEEEEecccchh------------hccHHHHHHHHHHhcCCCc-EEEEEecccC-ChHHHHhh
Confidence 222223344445444 4699999999871 1223444444433444443 6667665444 44333221
Q ss_pred CcceEEEcCCCCHHHHHHHHHHHHHhh
Q 001491 1002 RLDRLLFCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 1002 Rfd~~i~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
+....+.| .|++.|-.|+..++..+
T Consensus 151 ~~~~v~v~--lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 151 KLGGVYVF--LTPENRNRILNEILSVL 175 (179)
T ss_pred hcCCEEEE--EccchhhHHHHHHHHHh
Confidence 23344454 67777878888877655
No 461
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.86 E-value=0.0001 Score=90.66 Aligned_cols=49 Identities=29% Similarity=0.391 Sum_probs=41.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcC
Q 001491 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS 903 (1068)
Q Consensus 840 ~~~~~~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g 903 (1068)
...|+++.|++++.+.+...+.. +.+++|+||||||||++|++++..+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 46799999999999988776552 13799999999999999999998874
No 462
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.86 E-value=1.6e-05 Score=95.02 Aligned_cols=171 Identities=21% Similarity=0.259 Sum_probs=96.4
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhhhc-----cccHHH-------HHHHHHHHhcCCCeEEE
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASEQA-------VRDIFSKATAAAPCLLF 942 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~~~-----g~se~~-------l~~lf~~a~~~~p~VLf 942 (1068)
...++++|.+||||+++|+++.... +.+|+.+++..+..... |..... ....|.. ...++||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE---ADGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeE---CCCCEEE
Confidence 3579999999999999999998765 47899999876532211 110000 0011222 2356999
Q ss_pred EecCCccCCCCCCCCCCcchHHHHHHHHhccCcccc---------CcEEEEEeCCCCCCCChhhcCCCCcce-------E
Q 001491 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL---------TGVFVFAATSRPDLLDAALLRPGRLDR-------L 1006 (1068)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~---------~~v~viatTn~~d~ld~al~r~gRfd~-------~ 1006 (1068)
|||++.+ .......|+..++..... -++.+|+||+..- .....+|+|.. .
T Consensus 239 ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~ 304 (441)
T PRK10365 239 LDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNV 304 (441)
T ss_pred EeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhcc
Confidence 9999999 566778888887643211 1456777776531 12223345532 3
Q ss_pred EEcCCCCHHHHH----HHHHHHHHhhccC-CCCCchhhHHHHHHHHHhhhhhccccccccccccc
Q 001491 1007 LFCDFPSPRERL----DILKVISRKVCDT-SIPFSSLFCNELLICKLWHFFMCVSLNLSSYIIFC 1066 (1068)
Q Consensus 1007 i~~~~p~~~~r~----~Il~~~l~~~~~~-~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1066 (1068)
+.+..|...+|. .+++.++++.... .-.... ...++...-..+...++..+|.++++.+
T Consensus 305 ~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~-~~~~a~~~L~~~~wpgN~reL~~~~~~~ 368 (441)
T PRK10365 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKG-FTPQAMDLLIHYDWPGNIRELENAVERA 368 (441)
T ss_pred ceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCC-cCHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 566667666665 4555555554221 111001 1223333333333466666666666654
No 463
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.85 E-value=0.00016 Score=78.28 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=73.3
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNT 958 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~ 958 (1068)
.+-.++||+|||||+.++.+|+.+|..++.+++.+.. +...+.++|.-+... .+++.|||++.+-.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~-GaW~cfdefnrl~~------- 98 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQS-GAWLCFDEFNRLSE------- 98 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSH-------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhc-CchhhhhhhhhhhH-------
Confidence 4667899999999999999999999999999998754 345677777665443 46999999999821
Q ss_pred CcchHHHHHHHHhccC-ccc--------------cCcEEEEEeCCCC----CCCChhhcCCCCcceEEEcCCCCHHHHHH
Q 001491 959 GVTDRVVNQFLTELDG-VEV--------------LTGVFVFAATSRP----DLLDAALLRPGRLDRLLFCDFPSPRERLD 1019 (1068)
Q Consensus 959 ~~~~~~~~~lL~~Ld~-~~~--------------~~~v~viatTn~~----d~ld~al~r~gRfd~~i~~~~p~~~~r~~ 1019 (1068)
..-.++.+.+..+.. +.. ...+-++.|.|.. ..|++.++. -| +.+.+..||.....+
T Consensus 99 -~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~e 174 (231)
T PF12774_consen 99 -EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAE 174 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHH
Confidence 112223333333211 111 1234455566632 458888876 34 668899999665554
Q ss_pred HH
Q 001491 1020 IL 1021 (1068)
Q Consensus 1020 Il 1021 (1068)
++
T Consensus 175 i~ 176 (231)
T PF12774_consen 175 IL 176 (231)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 464
>PRK06921 hypothetical protein; Provisional
Probab=97.82 E-value=4.8e-05 Score=84.33 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=44.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHHHHHHHhcCCeEEEEccchh
Q 001491 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDS 666 (1068)
Q Consensus 590 p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILfIDEiD~ 666 (1068)
..+++|+|++|+|||+|+.++|+++....+ ..++++...++........ ..+...+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g--~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKG--VPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcC--ceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 467999999999999999999999864312 4455666544322111111 111122222 24567999999954
No 465
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.2e-05 Score=90.62 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=38.3
Q ss_pred cccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~ 615 (1068)
.+.|.|+.|.+.++..+.-.. ..+.++|++||||||||++|+.+...|.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA-----------------AGgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA-----------------AGGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH-----------------hcCCcEEEecCCCCchHHhhhhhcccCC
Confidence 567899999988877653311 1236799999999999999999987664
No 466
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.82 E-value=0.00096 Score=77.95 Aligned_cols=192 Identities=15% Similarity=0.212 Sum_probs=97.8
Q ss_pred chhHHHHHHHHHHHh--cCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEe-------c
Q 001491 559 MGTTASDVINRIKVL--LSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC-------C 629 (1068)
Q Consensus 559 ~~~~~~~i~~~l~~l--l~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~-------~ 629 (1068)
+..-++++.+.+..+ +.+ ....+-+||+||+||||||.++.++++++- .+..-. .
T Consensus 87 HkkKI~eVk~WL~~~~~~~~----------~l~~~iLLltGPsGcGKSTtvkvLskelg~------~~~Ew~Npi~~~~~ 150 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTP----------KLGSRILLLTGPSGCGKSTTVKVLSKELGY------QLIEWSNPINLKEP 150 (634)
T ss_pred hHHhHHHHHHHHHHHHHhcc----------CCCceEEEEeCCCCCCchhHHHHHHHhhCc------eeeeecCCcccccc
Confidence 555667777777622 111 112245999999999999999999999982 222211 1
Q ss_pred cccc------ccchhhHHHHHHHHHHHHHh------------cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHH
Q 001491 630 SRLS------LEKGPIIRQALSNFISEALD------------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1068)
Q Consensus 630 s~l~------~~~~~~~~~~l~~~f~~a~~------------~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (1068)
..+. ......--..++.....+.. ..+.+|++||+=..+. . .. ...|.
T Consensus 151 ~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~---------~-d~----~~~f~ 216 (634)
T KOG1970|consen 151 ENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFY---------R-DD----SETFR 216 (634)
T ss_pred ccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhh---------h-hh----HHHHH
Confidence 1111 11111112223333333311 2456899999855541 0 01 12222
Q ss_pred HHHHhhccccCcccCCCcEEEEEecCCCCCCChh------hhcCCcccccccCCCCCHHHHHHHHHHHHhhccccCC---
Q 001491 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQS------LTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECS--- 762 (1068)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~a------L~~~gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~~~--- 762 (1068)
..+..+.... ++ +-|++|.-++..+..++. +....|.. +|.|.|-...-....|+..+.......+
T Consensus 217 evL~~y~s~g--~~--PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k 291 (634)
T KOG1970|consen 217 EVLRLYVSIG--RC--PLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIK 291 (634)
T ss_pred HHHHHHHhcC--CC--cEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCc
Confidence 2233333221 11 124444444444433322 22223554 6788887877777777777765444433
Q ss_pred ---HHHHHHHhhccCCCCchhHHHHHHHHH
Q 001491 763 ---DEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 763 ---~~~l~~la~~t~g~s~~DL~~Lv~~a~ 789 (1068)
...++.++..+.| ||+..+....
T Consensus 292 ~~~~~~v~~i~~~s~G----DIRsAInsLQ 317 (634)
T KOG1970|consen 292 VPDTAEVELICQGSGG----DIRSAINSLQ 317 (634)
T ss_pred CchhHHHHHHHHhcCc----cHHHHHhHhh
Confidence 2335566655544 6766554433
No 467
>PRK09183 transposase/IS protein; Provisional
Probab=97.82 E-value=5.6e-05 Score=83.57 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=47.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchh-hHHHHHHHHHHHHHhcCCeEEEEccchh
Q 001491 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP-IIRQALSNFISEALDHAPSIVIFDNLDS 666 (1068)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~-~~~~~l~~~f~~a~~~~PsILfIDEiD~ 666 (1068)
..+.+++|+||||||||+|+.+++..+.... ..+.++++.++...... .....+...+... ...+.+++|||++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~ 175 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGY 175 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEccccc
Confidence 3456799999999999999999988754222 34555665554422111 1111233334332 24677999999976
Q ss_pred h
Q 001491 667 I 667 (1068)
Q Consensus 667 L 667 (1068)
.
T Consensus 176 ~ 176 (259)
T PRK09183 176 L 176 (259)
T ss_pred C
Confidence 5
No 468
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.81 E-value=0.00072 Score=81.62 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhccC
Q 001491 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1068)
Q Consensus 587 ~~~p~~vLL~GppGtGKTtLaraLA~~L~~~ 617 (1068)
+.++..+-|+|+.|+|||||.+.|+..+...
T Consensus 26 ~~~G~riGLvG~NGaGKSTLLkilaG~~~~~ 56 (530)
T COG0488 26 LNPGERIGLVGRNGAGKSTLLKILAGELEPD 56 (530)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHcCCCcCC
Confidence 4556779999999999999999999987543
No 469
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=9.2e-05 Score=82.25 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=82.0
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcCCc----------------EEEEecchhhhhhccccHHHHHHHHHHHh----cC
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLR----------------FISVKGPELLNKYIGASEQAVRDIFSKAT----AA 936 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g~~----------------~i~v~~~el~~~~~g~se~~l~~lf~~a~----~~ 936 (1068)
.+..+||+||.|+||+.+|.++|+.+-+. +..+. ++--++. -.-+.+|++-..+. .+
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~-p~~~~~~--I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFS-PQGKGRL--HSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEe-cCCCCCc--CcHHHHHHHHHHHhhCccCC
Confidence 34578899999999999999999876321 11121 1100000 12345566555542 34
Q ss_pred CCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCC
Q 001491 937 APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFP 1012 (1068)
Q Consensus 937 ~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p 1012 (1068)
+..|++||++|.+ +....|.||+.|+ +...++++|..|+.++.+.|-+++ |. ..+.|+++
T Consensus 95 ~~kv~ii~~ad~m-----------t~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRM-----------TLDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CceEEEEechhhc-----------CHHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 4579999999999 7789999999998 677788888899999999999887 54 33566654
No 470
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.81 E-value=4.2e-05 Score=85.03 Aligned_cols=137 Identities=20% Similarity=0.316 Sum_probs=78.0
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcC-Cc--EEEEecchhhhhhccccHHHHHHHHHHH-----------hcCCCeEEEE
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACS-LR--FISVKGPELLNKYIGASEQAVRDIFSKA-----------TAAAPCLLFF 943 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g-~~--~i~v~~~el~~~~~g~se~~l~~lf~~a-----------~~~~p~VLfi 943 (1068)
+.++||+||+|||||.+++..-..+. .. ...++.+... +...+.++.+.. ..++.+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 46899999999999999987665543 23 2233332211 112222222111 1234579999
Q ss_pred ecCCccCCCCCCCCCCcchHHHHHHHHhcc---Ccc--------ccCcEEEEEeCCCCC---CCChhhcCCCCcceEEEc
Q 001491 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELD---GVE--------VLTGVFVFAATSRPD---LLDAALLRPGRLDRLLFC 1009 (1068)
Q Consensus 944 DEid~l~~~r~~~~~~~~~~~~~~lL~~Ld---~~~--------~~~~v~viatTn~~d---~ld~al~r~gRfd~~i~~ 1009 (1068)
||+..-.+.. ++..-..+||+++- |.. .-.++.++||++... .+++-|+| .| .++.+
T Consensus 107 DDlN~p~~d~------ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~ 177 (272)
T PF12775_consen 107 DDLNMPQPDK------YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNI 177 (272)
T ss_dssp ETTT-S---T------TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE-
T ss_pred cccCCCCCCC------CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEe
Confidence 9999864432 22222334554442 211 223678888877432 37888887 66 46899
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q 001491 1010 DFPSPRERLDILKVISRKVC 1029 (1068)
Q Consensus 1010 ~~p~~~~r~~Il~~~l~~~~ 1029 (1068)
+.|+.++...|+..++....
T Consensus 178 ~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp ---TCCHHHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHhhhc
Confidence 99999999999999998764
No 471
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00046 Score=77.57 Aligned_cols=125 Identities=12% Similarity=0.120 Sum_probs=89.5
Q ss_pred cceEEEECCCCCChhHHHHHHHHHcCC-------------cEEEEecchhhhhhccccHHHHHHHHHHHh-----cCCCe
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAACSL-------------RFISVKGPELLNKYIGASEQAVRDIFSKAT-----AAAPC 939 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~g~-------------~~i~v~~~el~~~~~g~se~~l~~lf~~a~-----~~~p~ 939 (1068)
...+||+|+.|.||+.+|+.+|+.+-+ +++.++.. +. ...-..++++.+... .+...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCcccCCce
Confidence 356789999999999999999988611 22223200 00 012245666665542 13567
Q ss_pred EEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCCCHHHHHH
Q 001491 940 LLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 1019 (1068)
Q Consensus 940 VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p~~~~r~~ 1019 (1068)
|++||++|.+ +....|.||+.|+ +....+++|.+|+.++.+-+.++. |. ..+.|.+++.++..+
T Consensus 93 vvII~~~e~m-----------~~~a~NaLLK~LE--EPp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 93 ILIIKNIEKT-----------SNSLLNALLKTIE--EPPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILA 156 (299)
T ss_pred EEEEeccccc-----------CHHHHHHHHHHhh--CCCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHH
Confidence 9999999988 6778999999998 566777777778788889888887 43 568999999888776
Q ss_pred HHHH
Q 001491 1020 ILKV 1023 (1068)
Q Consensus 1020 Il~~ 1023 (1068)
.+..
T Consensus 157 ~l~~ 160 (299)
T PRK07132 157 KLLS 160 (299)
T ss_pred HHHH
Confidence 5553
No 472
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.77 E-value=4.2e-05 Score=79.63 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=42.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhH-HHHHHHHHHHHHhcCCeEEEEccchh
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDS 666 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~-~~~l~~~f~~a~~~~PsILfIDEiD~ 666 (1068)
.+.+++|+||+|+|||+||.++++++-... ..+.+++..++...-.... .....+.+... ....+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 347899999999999999999999875432 4566666655532110000 00112222222 3457999999854
No 473
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.00081 Score=72.07 Aligned_cols=177 Identities=21% Similarity=0.322 Sum_probs=104.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccc-------------hhh----HHHHHHHHHHHHH-
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK-------------GPI----IRQALSNFISEAL- 652 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~-------------~~~----~~~~l~~~f~~a~- 652 (1068)
+-+.++|+-|||||++.|++...+..+. ...++++...+.... .-. .++.-+.+.....
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~---~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQ---VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCc---eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 3489999999999999998877765332 223555543332211 111 1122222222222
Q ss_pred hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcC---
Q 001491 653 DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS--- 729 (1068)
Q Consensus 653 ~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~--- 729 (1068)
...|-++++||++.+.. ... .....|.+.-+++.+. -.++++|-. .|.+.++.+
T Consensus 129 g~r~v~l~vdEah~L~~-----------~~l-e~Lrll~nl~~~~~~~-------l~ivL~Gqp----~L~~~lr~~~l~ 185 (269)
T COG3267 129 GKRPVVLMVDEAHDLND-----------SAL-EALRLLTNLEEDSSKL-------LSIVLIGQP----KLRPRLRLPVLR 185 (269)
T ss_pred CCCCeEEeehhHhhhCh-----------hHH-HHHHHHHhhcccccCc-------eeeeecCCc----ccchhhchHHHH
Confidence 24568999999999852 111 2222333332222211 124555432 233332221
Q ss_pred ---CcccccccCCCCCHHHHHHHHHHHHhhcccc---CCHHHHHHHhhccCCCCchhHHHHHHHHHHHHHh
Q 001491 730 ---GRFDFHVQLPAPAASERKAILEHEIQRRSLE---CSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (1068)
Q Consensus 730 ---gRF~~~i~l~~P~~~er~~IL~~~l~~~~l~---~~~~~l~~la~~t~g~s~~DL~~Lv~~a~~~a~~ 794 (1068)
.|+...++++|.+.++-...+++.++..+.. ++++.+..+...+.|| |+-+.+++..|...++.
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYS 255 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHH
Confidence 3787668999999998899999888865433 6777888899888884 66777777777766654
No 474
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.77 E-value=0.00018 Score=87.83 Aligned_cols=202 Identities=13% Similarity=0.104 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHHHHHHH---HH--HHHhcCCeEEEEccch
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNF---IS--EALDHAPSIVIFDNLD 665 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~---f~--~a~~~~PsILfIDEiD 665 (1068)
+||+|-|++|+|||+++++++..+............++-..+.+. .+++..+..- ++ .......+|||+||++
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg--~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGG--LDLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCC--chHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 689999999999999999999987632111111111222333332 2222222110 00 0011123599999998
Q ss_pred hhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc----ccCcccCCCcEEEEEecCCC---CCCChhhhcCCcccccccC
Q 001491 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFHVQL 738 (1068)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~V~vIattn~~---~~L~~aL~~~gRF~~~i~l 738 (1068)
.+- ..+...|++.|+.-.- ......-..++++|++.|.. ..++++++. ||+.++.+
T Consensus 104 ~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 104 RLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 873 2677777777775321 11111112368888875432 348888998 99999999
Q ss_pred CCCCHHHHH-------HHHHHHHhhccccCCHHHHHHHhhccC--CC-CchhHHHHHHHHHHHHHhhhcccCCccccccc
Q 001491 739 PAPAASERK-------AILEHEIQRRSLECSDEILLDVASKCD--GY-DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIK 808 (1068)
Q Consensus 739 ~~P~~~er~-------~IL~~~l~~~~l~~~~~~l~~la~~t~--g~-s~~DL~~Lv~~a~~~a~~r~~~~~~~~~~~~~ 808 (1068)
+.|+..+.. +|....-.-.+..+++..+..++..+. |. +.+....+++-|...|.-+ +.
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~-----------Gr 235 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALA-----------GR 235 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHc-----------CC
Confidence 988765422 333322221356678877776655432 32 4454444444444333322 22
Q ss_pred cccchhhhhhhhcc
Q 001491 809 PTLVRDDFSQAMHE 822 (1068)
Q Consensus 809 ~~lt~edf~~Al~~ 822 (1068)
..++.+|+..|+.-
T Consensus 236 ~~V~~~dv~~Aa~l 249 (584)
T PRK13406 236 TAVEEEDLALAARL 249 (584)
T ss_pred CCCCHHHHHHHHHH
Confidence 45667777666543
No 475
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.76 E-value=0.00051 Score=74.90 Aligned_cols=138 Identities=20% Similarity=0.227 Sum_probs=79.0
Q ss_pred cccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEE-EEeccccc-
Q 001491 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV-FVCCSRLS- 633 (1068)
Q Consensus 556 l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~-~i~~s~l~- 633 (1068)
+.|.--+.+.|...++..+.... -..|--+=|+|++||||..+++.||+.+.........+. ++....+-
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 44566677777777766543220 112233668899999999999999998864332211111 11111221
Q ss_pred ccchhhHHHHHHHHHH-HHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEE
Q 001491 634 LEKGPIIRQALSNFIS-EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (1068)
Q Consensus 634 ~~~~~~~~~~l~~~f~-~a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~v 712 (1068)
....+..+..++.++. .....+.+++++||.|++.+ .+.+.+...+|.+..... ....+.++
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~---------------gLld~lkpfLdyyp~v~g--v~frkaIF 218 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP---------------GLLDVLKPFLDYYPQVSG--VDFRKAIF 218 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH---------------hHHHHHhhhhcccccccc--ccccceEE
Confidence 2233334444444433 34456778999999999952 677777777776543221 11224566
Q ss_pred EEecCC
Q 001491 713 VASAQS 718 (1068)
Q Consensus 713 Iattn~ 718 (1068)
|.-+|.
T Consensus 219 IfLSN~ 224 (344)
T KOG2170|consen 219 IFLSNA 224 (344)
T ss_pred EEEcCC
Confidence 666654
No 476
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.71 E-value=0.00017 Score=72.95 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=46.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccccccc------------------------chhhHHHHHHHHH
Q 001491 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------------------------KGPIIRQALSNFI 648 (1068)
Q Consensus 593 vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~------------------------~~~~~~~~l~~~f 648 (1068)
++|+|+||+|||++++.++..+.... ..+.++++...... .............
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG---GKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAE 78 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHH
Confidence 78999999999999999999875422 33444444322110 0011111112233
Q ss_pred HHHHhcCCeEEEEccchhhhc
Q 001491 649 SEALDHAPSIVIFDNLDSIIS 669 (1068)
Q Consensus 649 ~~a~~~~PsILfIDEiD~L~~ 669 (1068)
..+....+.+++|||+..+..
T Consensus 79 ~~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 79 RLRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHHH
Confidence 445557889999999998863
No 477
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.70 E-value=2.1e-05 Score=93.43 Aligned_cols=170 Identities=23% Similarity=0.274 Sum_probs=113.1
Q ss_pred cceEEEECCCCCChhHHHHHHHHHc--CCcEEEEecchhhhh-------------hccccHHHHHHHHHHHhcCCCeEEE
Q 001491 878 RSNVLLYGPPGCGKTHIVGAAAAAC--SLRFISVKGPELLNK-------------YIGASEQAVRDIFSKATAAAPCLLF 942 (1068)
Q Consensus 878 ~~~lLL~GppGtGKT~lA~alA~~~--g~~~i~v~~~el~~~-------------~~g~se~~l~~lf~~a~~~~p~VLf 942 (1068)
..++++.|.|||||-.+|+++-... ..+|+.+|+.-+-+. +.|...+..+..+..|..+ .||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccH
Confidence 3579999999999999999998776 467999987654332 1222223334444544444 899
Q ss_pred EecCCccCCCCCCCCCCcchHHHHHHHHhccCcc--------ccCcEEEEEeCCCCCCCChhhcCCCCcce-------EE
Q 001491 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------VLTGVFVFAATSRPDLLDAALLRPGRLDR-------LL 1007 (1068)
Q Consensus 943 iDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~--------~~~~v~viatTn~~d~ld~al~r~gRfd~-------~i 1007 (1068)
+|||..+ .-.....||..|..-. ..=.+-||+||++.= .++.+.|||.+ .+
T Consensus 413 ldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 9999988 5677888888875321 111478999998731 24455666653 34
Q ss_pred EcCCCCHHHHH---HHHHHHHHhhccCCCCCchhhHHHHHHHHHhhhhhccccccccccccccC
Q 001491 1008 FCDFPSPRERL---DILKVISRKVCDTSIPFSSLFCNELLICKLWHFFMCVSLNLSSYIIFCFL 1068 (1068)
Q Consensus 1008 ~~~~p~~~~r~---~Il~~~l~~~~~~~id~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1068 (1068)
.+..|...+|. ..+..++++..+..+++ +.++...-+.+.-.+|-.+|.++++++++
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l----~~~~~~~l~~~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQL----DDDALARLLAYRWPGNIRELDNVIERLAA 538 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccC----CHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 55666665554 44444444443333333 55666677888999999999999998763
No 478
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00014 Score=79.99 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhHHH-HHHHHHHHHHhcCCeEEEEccchhh
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSI 667 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~-~l~~~f~~a~~~~PsILfIDEiD~L 667 (1068)
.+.+++|+||||+|||+||-|++.++. ..+ ..+.++...++...-...... .....+... -....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 457899999999999999999999987 332 556666666654322111111 111111111 134569999999664
No 479
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.68 E-value=0.00017 Score=86.20 Aligned_cols=140 Identities=18% Similarity=0.264 Sum_probs=92.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc----------CCcEEEEecchhhhh----------hccccH------HHHHHHHHH
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELLNK----------YIGASE------QAVRDIFSK 932 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~----------g~~~i~v~~~el~~~----------~~g~se------~~l~~lf~~ 932 (1068)
+.+.+.|.||||||.....+-+.+ .+.+++||+-.+.+. +.|... ..++.-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 468889999999999998888754 467888887655432 233322 122333331
Q ss_pred H-hcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcC--CCCcc-eEEE
Q 001491 933 A-TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLR--PGRLD-RLLF 1008 (1068)
Q Consensus 933 a-~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r--~gRfd-~~i~ 1008 (1068)
. -...++||+|||.|.|..+. ..++..|+.+-. .....++||+-.|..|+...-|.. ..|++ ..|.
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~--------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~ 572 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRS--------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRIC 572 (767)
T ss_pred CCCCCCCEEEEeccHHHHhccc--------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhccceeee
Confidence 1 23457899999999996542 345555554432 334567888888877764333321 12543 3589
Q ss_pred cCCCCHHHHHHHHHHHHHhh
Q 001491 1009 CDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 1009 ~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
|.+++.++..+|+..-++..
T Consensus 573 F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 573 FQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred cCCCCHHHHHHHHHHhhcch
Confidence 99999999999999888776
No 480
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.68 E-value=0.00015 Score=81.89 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccchhhH-HHHHHHHHHHHHhcCCeEEEEccchhh
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDSI 667 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~-~~~l~~~f~~a~~~~PsILfIDEiD~L 667 (1068)
...|++|+||+|+|||+|+.++|+++.... ..+.++....+...-.... ...+.+.+... ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG---VSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 347899999999999999999999986332 3344555444332111110 01122233222 45679999999553
No 481
>PRK06851 hypothetical protein; Provisional
Probab=97.66 E-value=0.00057 Score=78.55 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=28.4
Q ss_pred ceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecc
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGP 912 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~ 912 (1068)
..++|.|+||||||++++.++..+ |..+...-++
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 469999999999999999999877 7777666654
No 482
>PHA00729 NTP-binding motif containing protein
Probab=97.66 E-value=0.00013 Score=78.06 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcC
Q 001491 880 NVLLYGPPGCGKTHIVGAAAAACS 903 (1068)
Q Consensus 880 ~lLL~GppGtGKT~lA~alA~~~g 903 (1068)
+++++|+||||||++|.++|..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 483
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00011 Score=89.73 Aligned_cols=142 Identities=22% Similarity=0.290 Sum_probs=77.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEeccc--ccccchhhHHHHH-HHHHHHHH---hcCCeEEEEccc
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR--LSLEKGPIIRQAL-SNFISEAL---DHAPSIVIFDNL 664 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~--l~~~~~~~~~~~l-~~~f~~a~---~~~PsILfIDEi 664 (1068)
-|+||.|.||+|||.|.+.+++.+. ..++.+... -.+-.....+... .+|.-++- -..++|..|||+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aP-------r~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf 392 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAP-------RGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF 392 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCC-------ceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec
Confidence 5799999999999999999998764 122222211 1111111111111 01111111 134679999999
Q ss_pred hhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCcccCCCcEEEEEecCCCC-------------CCChhhh
Q 001491 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-------------KIPQSLT 727 (1068)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~V~vIattn~~~-------------~L~~aL~ 727 (1068)
|.+- + .-...+.+.|+... +.+-...-.....++|++|+.. .+++.|.
T Consensus 393 dKm~----~-----------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lL 457 (682)
T COG1241 393 DKMN----E-----------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLL 457 (682)
T ss_pred cCCC----h-----------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHH
Confidence 9873 1 22334555555422 1110001112467888999854 3678899
Q ss_pred cCCcccccc-cCCCCCHHHHHHHHHHHHhh
Q 001491 728 SSGRFDFHV-QLPAPAASERKAILEHEIQR 756 (1068)
Q Consensus 728 ~~gRF~~~i-~l~~P~~~er~~IL~~~l~~ 756 (1068)
+ ||+..+ -...|+.+.-..|..+.+..
T Consensus 458 S--RFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 458 S--RFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred h--hCCeeEEecCCCCccchHHHHHHHHHH
Confidence 9 999765 34566665555555544443
No 484
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.64 E-value=0.0002 Score=85.07 Aligned_cols=169 Identities=19% Similarity=0.265 Sum_probs=86.0
Q ss_pred ccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccc--
Q 001491 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-- 632 (1068)
Q Consensus 555 ~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l-- 632 (1068)
++.|++..+..+.=+ ++.-....+-..-.....-+|||+|.||||||.+++.+++.+... .|.+...-
T Consensus 430 sIye~edvKkglLLq---LfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg-------~yTSGkGsSa 499 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQ---LFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG-------VYTSGKGSSA 499 (804)
T ss_pred hhhcccchhhhHHHH---HhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc-------eeecCCccch
Confidence 455676666655322 222221211111123333579999999999999999999976521 11111000
Q ss_pred ccc-----chhhHHHHHHHHHHHH---HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh----ccc
Q 001491 633 SLE-----KGPIIRQALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY----GEK 700 (1068)
Q Consensus 633 ~~~-----~~~~~~~~l~~~f~~a---~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~----~~~ 700 (1068)
.+. ..+..++ +.-+. .....++..|||+|++-. .-...|.+.|+.- ...
T Consensus 500 vGLTayVtrd~dtkq----lVLesGALVLSD~GiCCIDEFDKM~d---------------StrSvLhEvMEQQTvSIAKA 560 (804)
T KOG0478|consen 500 VGLTAYVTKDPDTRQ----LVLESGALVLSDNGICCIDEFDKMSD---------------STRSVLHEVMEQQTLSIAKA 560 (804)
T ss_pred hcceeeEEecCccce----eeeecCcEEEcCCceEEchhhhhhhH---------------HHHHHHHHHHHHhhhhHhhc
Confidence 000 0001111 11111 012345888999999831 1122344444421 111
Q ss_pred cCcccC-CCcEEEEEecCCCC-------------CCChhhhcCCcccccc-cCCCCCHHHHHHHHHHHHh
Q 001491 701 RKSSCG-IGPIAFVASAQSLE-------------KIPQSLTSSGRFDFHV-QLPAPAASERKAILEHEIQ 755 (1068)
Q Consensus 701 ~~~~~~-~~~V~vIattn~~~-------------~L~~aL~~~gRF~~~i-~l~~P~~~er~~IL~~~l~ 755 (1068)
+ -.+. -....|+|++|+.. .|++.|++ ||+.++ -+..||...-..+..+...
T Consensus 561 G-II~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 561 G-IIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred c-eeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 1 0111 12467899999632 36899999 999764 5677777644455554443
No 485
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.63 E-value=0.00014 Score=77.73 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=68.7
Q ss_pred CCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhh-hhh---cc-------------------ccHHHH
Q 001491 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL-NKY---IG-------------------ASEQAV 926 (1068)
Q Consensus 873 ~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~-~~~---~g-------------------~se~~l 926 (1068)
.|++.+.-++++||||||||+++..++... |.+.+.++..++. .++ .. .....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 467777889999999999999998887543 6677777765411 100 00 001123
Q ss_pred HHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCC
Q 001491 927 RDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSR 989 (1068)
Q Consensus 927 ~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~ 989 (1068)
..+...+....+++|+||-+..++.....+......+.+..++..|..+....++.+++|...
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 334444455578899999999886321111111111233444444555556677888877543
No 486
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.00092 Score=75.19 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=93.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCC-------ceeeeEEEEecccccccchhhHHHHHHHHHHHHHh-cCCeEEEEc
Q 001491 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK-------DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-HAPSIVIFD 662 (1068)
Q Consensus 591 ~~vLL~GppGtGKTtLaraLA~~L~~~~-------~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~-~~PsILfID 662 (1068)
..+||+|+.|.||+.+++++++.+.... .....+..++... ..-..++++...+.+.-.+.. ....|++||
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~ 97 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-KDLSKSEFLSAINKLYFSSFVQSQKKILIIK 97 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-CcCCHHHHHHHHHHhccCCcccCCceEEEEe
Confidence 5588999999999999999999983211 0001233333111 111223444333333222211 245699999
Q ss_pred cchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCCcccccccCCCCC
Q 001491 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPA 742 (1068)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~gRF~~~i~l~~P~ 742 (1068)
++|.+. ....+.|+..+++... .+++|..|+.++.+-+.+++ |.. .+++++++
T Consensus 98 ~~e~m~---------------~~a~NaLLK~LEEPp~---------~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~ 150 (299)
T PRK07132 98 NIEKTS---------------NSLLNALLKTIEEPPK---------DTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPD 150 (299)
T ss_pred cccccC---------------HHHHHHHHHHhhCCCC---------CeEEEEEeCChHhChHHHHh--CeE-EEECCCCC
Confidence 998873 1345567777777553 36677777777889899998 554 78999999
Q ss_pred HHHHHHHHHHHHhhccccCCHHHHHHHhhccCC
Q 001491 743 ASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1068)
Q Consensus 743 ~~er~~IL~~~l~~~~l~~~~~~l~~la~~t~g 775 (1068)
.++..+.+... + ++++....+|..+.|
T Consensus 151 ~~~l~~~l~~~----~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 151 QQKILAKLLSK----N--KEKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHHHHHHHc----C--CChhHHHHHHHHcCC
Confidence 98887666532 2 455555555555554
No 487
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.59 E-value=0.00081 Score=78.56 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=78.8
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCCcEEEEecc-hh------------hhhhccccHHHHHHHHHHHh-----------
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP-EL------------LNKYIGASEQAVRDIFSKAT----------- 934 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~-el------------~~~~~g~se~~l~~lf~~a~----------- 934 (1068)
+-+||+||+||||||..+.+++++|..+++-.-+ .+ ...++...-........++.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 3577889999999999999999999998885411 11 11111111111122333331
Q ss_pred -cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhc------CCCCcceEE
Q 001491 935 -AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALL------RPGRLDRLL 1007 (1068)
Q Consensus 935 -~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~------r~gRfd~~i 1007 (1068)
...+.+||+||+=..+..- ..+.+...|.++-......-|++|.-+..++..++..+ -..|++. |
T Consensus 191 ~~~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~-I 262 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD-------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISN-I 262 (634)
T ss_pred cccCceEEEeeccchhhhhh-------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcce-E
Confidence 1345689999987664320 23444555555443333332333332333333222222 2236654 7
Q ss_pred EcCCCCHHHHHHHHHHHHHhh
Q 001491 1008 FCDFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 1008 ~~~~p~~~~r~~Il~~~l~~~ 1028 (1068)
.|.+-...-..+.++.++...
T Consensus 263 sFNPIa~T~MKK~L~ric~~e 283 (634)
T KOG1970|consen 263 SFNPIAPTIMKKFLKRICRIE 283 (634)
T ss_pred eecCCcHHHHHHHHHHHHHHh
Confidence 899888877777777777665
No 488
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00034 Score=76.21 Aligned_cols=120 Identities=10% Similarity=0.073 Sum_probs=81.9
Q ss_pred ccceEEEECCCCCChhHHHHHHHHHcCCc--------------EEEEecchhhhhhc---cccHHHHHHHHHHHh-----
Q 001491 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------FISVKGPELLNKYI---GASEQAVRDIFSKAT----- 934 (1068)
Q Consensus 877 ~~~~lLL~GppGtGKT~lA~alA~~~g~~--------------~i~v~~~el~~~~~---g~se~~l~~lf~~a~----- 934 (1068)
++..+||+||.|+||..+|.++|+.+-+. +..-+-+|+.--+. .-.-+.+|++.....
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 45679999999999999999999775211 00001112111000 112344555554432
Q ss_pred cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCC
Q 001491 935 AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFP 1012 (1068)
Q Consensus 935 ~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p 1012 (1068)
.++..|++||++|++ ...+.|.||+.|+ +...++++|.+|+.++.+.|-+++ |... +.|+.+
T Consensus 86 ~~~~KV~II~~ae~m-----------~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq~-~~~~~~ 147 (261)
T PRK05818 86 SNGKKIYIIYGIEKL-----------NKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCVQ-YVVLSK 147 (261)
T ss_pred cCCCEEEEeccHhhh-----------CHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--heee-eecCCh
Confidence 234579999999999 6789999999998 677888999999999999999998 5433 455554
No 489
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.58 E-value=7e-05 Score=71.21 Aligned_cols=94 Identities=13% Similarity=0.226 Sum_probs=51.9
Q ss_pred EEEECCCCCChhHHHHHHHHHcCCcEEEEecchhhhhhccccHHHHHHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCc
Q 001491 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV 960 (1068)
Q Consensus 881 lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~el~~~~~g~se~~l~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~ 960 (1068)
+.|+|+||+|||++|+.+|..+...+-......++. ... -.+.+.- ..+++ ++++||+...... .
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~---~~~---~~~~w~g-Y~~q~-vvi~DD~~~~~~~------~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYT---RNP---GDKFWDG-YQGQP-VVIIDDFGQDNDG------Y- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEe---CCC---ccchhhc-cCCCc-EEEEeecCccccc------c-
Confidence 479999999999999999977743321111111111 000 0112222 22333 8999999886311 1
Q ss_pred chHHHHHHHHhccCcc-------------ccCcEEEEEeCCC
Q 001491 961 TDRVVNQFLTELDGVE-------------VLTGVFVFAATSR 989 (1068)
Q Consensus 961 ~~~~~~~lL~~Ld~~~-------------~~~~v~viatTn~ 989 (1068)
......+++..++... .....+||+|||.
T Consensus 66 ~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 66 NYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred chHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 2335666666665321 1234678888873
No 490
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.58 E-value=3.1e-05 Score=88.68 Aligned_cols=166 Identities=20% Similarity=0.226 Sum_probs=84.8
Q ss_pred CCCchhHHHHHHHHHHhccCCchhhhhhCCccccceEEEECCCCCChhHHHHHHHHHcCCcEEEEecch-----hhhhhc
Q 001491 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPE-----LLNKYI 919 (1068)
Q Consensus 845 ~i~gl~~~k~~l~e~i~~~~~~~~~~~~~~~~~~~~lLL~GppGtGKT~lA~alA~~~g~~~i~v~~~e-----l~~~~~ 919 (1068)
.+.|.+.+|..+.=.+........ -.....|..-|+||+|.|||||+.|.+.+++.....++ +++.. +.....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~-~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKND-PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCC-CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhcccccc-ccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCccceec
Confidence 456777777665422221111000 00111345679999999999999999988766543332 22211 111000
Q ss_pred ---cccHHHH-HHHHHHHhcCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCcc-----------ccCcEEEE
Q 001491 920 ---GASEQAV-RDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVF 984 (1068)
Q Consensus 920 ---g~se~~l-~~lf~~a~~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----------~~~~v~vi 984 (1068)
...+..+ ...+-.|.+ .|++|||+|.+ .+.....|...|+.-. -..+.-|+
T Consensus 103 ~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp CCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred cccccceeEEeCCchhcccC---ceeeecccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 0000000 123333333 39999999998 4456778888886321 12357889
Q ss_pred EeCCCCC-------------CCChhhcCCCCcceEEEc-CCCCHHHHHHHHHHHHHhh
Q 001491 985 AATSRPD-------------LLDAALLRPGRLDRLLFC-DFPSPRERLDILKVISRKV 1028 (1068)
Q Consensus 985 atTn~~d-------------~ld~al~r~gRfd~~i~~-~~p~~~~r~~Il~~~l~~~ 1028 (1068)
||+|... .+++.|+. |||-++.+ +.|+.+.-..|.+++++..
T Consensus 169 aa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 169 AAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred HHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 9988543 26788888 99987765 7777776677777777655
No 491
>PF05729 NACHT: NACHT domain
Probab=97.57 E-value=0.00053 Score=69.70 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=71.6
Q ss_pred eEEEECCCCCChhHHHHHHHHHcCC--------c-EEEEecchhhh------------hhccccHHHHHHH-HHHHhcCC
Q 001491 880 NVLLYGPPGCGKTHIVGAAAAACSL--------R-FISVKGPELLN------------KYIGASEQAVRDI-FSKATAAA 937 (1068)
Q Consensus 880 ~lLL~GppGtGKT~lA~alA~~~g~--------~-~i~v~~~el~~------------~~~g~se~~l~~l-f~~a~~~~ 937 (1068)
-++++|+||+|||++++.++..+.. . ++.+...+... ............. ...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4789999999999999999977611 1 12222222211 1111111122221 12234566
Q ss_pred CeEEEEecCCccCCCCCCCCCCcchHHHHHHH-HhccCccccCcEEEEEeCCCCCCC---ChhhcCCCCcceEEEcCCCC
Q 001491 938 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL-TELDGVEVLTGVFVFAATSRPDLL---DAALLRPGRLDRLLFCDFPS 1013 (1068)
Q Consensus 938 p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL-~~Ld~~~~~~~v~viatTn~~d~l---d~al~r~gRfd~~i~~~~p~ 1013 (1068)
..+++||-+|.+....+. ........++ ..+.. ....++-++.|+. ++.. ...+.. ...+.+.+.+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~-~~~~~~~liit~r-~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ-ALPPGVKLIITSR-PRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh-ccCCCCeEEEEEc-CChHHHHHHhcCC----CcEEEECCCC
Confidence 779999999998643211 0111222222 23322 1123333333333 3232 222222 1568889999
Q ss_pred HHHHHHHHHHHHHh
Q 001491 1014 PRERLDILKVISRK 1027 (1068)
Q Consensus 1014 ~~~r~~Il~~~l~~ 1027 (1068)
.+++.++++...+.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999877653
No 492
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.56 E-value=0.0003 Score=79.46 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=75.2
Q ss_pred CCccccceEEEECCCCCChhHHHHHHHHHc---CCcEEEEecchhhhh----------------hccccHHHHHHHHHHH
Q 001491 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK----------------YIGASEQAVRDIFSKA 933 (1068)
Q Consensus 873 ~~~~~~~~lLL~GppGtGKT~lA~alA~~~---g~~~i~v~~~el~~~----------------~~g~se~~l~~lf~~a 933 (1068)
.|++.+.-++++||||||||+||-.++... |..++.++..+.... .....++.+..+...+
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 366777789999999999999987655443 677777765443221 0111223333333334
Q ss_pred hcCCCeEEEEecCCccCCCCCCC------CCCcchHHHHHHHHhccCccccCcEEEEEeCCCCC
Q 001491 934 TAAAPCLLFFDEFDSIAPKRGHD------NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 991 (1068)
Q Consensus 934 ~~~~p~VLfiDEid~l~~~r~~~------~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d 991 (1068)
+...+++++||-+.++.++..-. ..+...|.++++|..|.+.....++.+|+|....+
T Consensus 130 ~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~ 193 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIRE 193 (321)
T ss_pred hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEeccee
Confidence 56778899999999998753211 11223355667777777777777888887754333
No 493
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.00071 Score=73.74 Aligned_cols=126 Identities=10% Similarity=0.062 Sum_probs=79.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhccCCcee----------------eeEEEEecccccccchhhHHHHHHHHHHHH
Q 001491 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV----------------AHIVFVCCSRLSLEKGPIIRQALSNFISEA 651 (1068)
Q Consensus 588 ~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~----------------~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a 651 (1068)
.+|..+||+||.|+||..+|.++|+.+-...... ..+..+.... ..-..++++...+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCHHHHHHHHHHHccCc
Confidence 3457799999999999999999999875332100 1111211111 1122334444333332222
Q ss_pred Hh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCC
Q 001491 652 LD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1068)
Q Consensus 652 ~~-~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~g 730 (1068)
.. .+..|++||++|.+. ....+.|+..+++-.. ++++|..|+.++.+.+.++|
T Consensus 84 ~e~~~~KV~II~~ae~m~---------------~~AaNaLLK~LEEPp~---------~t~fiLit~~~~~lLpTI~S-- 137 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLN---------------KQSANSLLKLIEEPPK---------NTYGIFTTRNENNILNTILS-- 137 (261)
T ss_pred hhcCCCEEEEeccHhhhC---------------HHHHHHHHHhhcCCCC---------CeEEEEEECChHhCchHhhh--
Confidence 12 234699999999984 2456667777777443 47888899999999999999
Q ss_pred cccccccCCCC
Q 001491 731 RFDFHVQLPAP 741 (1068)
Q Consensus 731 RF~~~i~l~~P 741 (1068)
|.. .+.++.+
T Consensus 138 RCq-~~~~~~~ 147 (261)
T PRK05818 138 RCV-QYVVLSK 147 (261)
T ss_pred hee-eeecCCh
Confidence 654 4556665
No 494
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.00075 Score=75.31 Aligned_cols=128 Identities=12% Similarity=0.168 Sum_probs=84.7
Q ss_pred cccceEEEECCCCCChhHHHHHHHHHcCCcE----------------EEEecchhhhhh-cc--ccHHHHHHHHHHHh--
Q 001491 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRF----------------ISVKGPELLNKY-IG--ASEQAVRDIFSKAT-- 934 (1068)
Q Consensus 876 ~~~~~lLL~GppGtGKT~lA~alA~~~g~~~----------------i~v~~~el~~~~-~g--~se~~l~~lf~~a~-- 934 (1068)
+.+..+||+|| +||+++|+.+|+.+-+.- ..-+-+|+.--. .| -.-+.+|++...+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34567899996 689999999998752110 000112221100 01 12356677665553
Q ss_pred --cCCCeEEEEecCCccCCCCCCCCCCcchHHHHHHHHhccCccccCcEEEEEeCCCCCCCChhhcCCCCcceEEEcCCC
Q 001491 935 --AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFP 1012 (1068)
Q Consensus 935 --~~~p~VLfiDEid~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~~~~~v~viatTn~~d~ld~al~r~gRfd~~i~~~~p 1012 (1068)
.++..|++||++|.+ +....|.||+.|+ +...++++|.+|+.++.+-|-+++ |. ..|.|+.
T Consensus 100 p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~- 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM-----------HVNAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK- 162 (290)
T ss_pred cccCCcEEEEeehhhhc-----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-
Confidence 234579999999999 6789999999998 566778888889999999999998 55 4577755
Q ss_pred CHHHHHHHHH
Q 001491 1013 SPRERLDILK 1022 (1068)
Q Consensus 1013 ~~~~r~~Il~ 1022 (1068)
+.++..+++.
T Consensus 163 ~~~~~~~~L~ 172 (290)
T PRK07276 163 NEAYLIQLLE 172 (290)
T ss_pred cHHHHHHHHH
Confidence 5555444443
No 495
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.54 E-value=0.00018 Score=83.04 Aligned_cols=101 Identities=22% Similarity=0.401 Sum_probs=59.6
Q ss_pred ccccceEEEECCCCCChhHHHHHHHHHcCCc-EEEEecchhh-------hhhccccHHHHHHHHHHHhcCCCeEEEEecC
Q 001491 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-FISVKGPELL-------NKYIGASEQAVRDIFSKATAAAPCLLFFDEF 946 (1068)
Q Consensus 875 ~~~~~~lLL~GppGtGKT~lA~alA~~~g~~-~i~v~~~el~-------~~~~g~se~~l~~lf~~a~~~~p~VLfiDEi 946 (1068)
..++.|+.|+|++|+|||.|..++...+... -..+--.++. ..+.|. ...+..+-+... ....+|.|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~-~~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELA-KESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHH-hcCCEEEEeee
Confidence 3467899999999999999999998877441 1111111111 111111 122333333322 22349999999
Q ss_pred CccCCCCCCCCCCcc-hHHHHHHHHhccCccccCcEEEEEeCCCC
Q 001491 947 DSIAPKRGHDNTGVT-DRVVNQFLTELDGVEVLTGVFVFAATSRP 990 (1068)
Q Consensus 947 d~l~~~r~~~~~~~~-~~~~~~lL~~Ld~~~~~~~v~viatTn~~ 990 (1068)
+-- .+. --++..|+..| -..++++|+|+|++
T Consensus 137 ~V~---------DiaDAmil~rLf~~l----~~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT---------DIADAMILKRLFEAL----FKRGVVLVATSNRP 168 (362)
T ss_pred ecc---------chhHHHHHHHHHHHH----HHCCCEEEecCCCC
Confidence 863 112 23455555554 45789999999975
No 496
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.54 E-value=0.00062 Score=90.84 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=38.4
Q ss_pred ccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccC
Q 001491 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1068)
Q Consensus 553 ~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~ 617 (1068)
+.+++|++..++++...+ ... ....+-+-|+|++|+||||||++++..+...
T Consensus 183 ~~~~vG~~~~l~~l~~lL----~l~---------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLL----HLE---------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred cccccchHHHHHHHHHHH----ccc---------cCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 456788988888776543 211 2234569999999999999999999887643
No 497
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.52 E-value=0.00051 Score=84.57 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=36.4
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhcc
Q 001491 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1068)
Q Consensus 551 ~~~~~l~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~ 616 (1068)
..++++.|.+.+++.+...+. .+++++|+||||||||++++++++.+..
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~-----------------~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAK-----------------QRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHH-----------------hCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 345677888777765544221 1247999999999999999999998763
No 498
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.50 E-value=0.00015 Score=88.44 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=85.1
Q ss_pred ceEEEECCCCCChhHHHHHHHHHcCC--cEEEEecchhhhhhccccH--HHH--------HHHHHHHhcCCCeEEEEecC
Q 001491 879 SNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKYIGASE--QAV--------RDIFSKATAAAPCLLFFDEF 946 (1068)
Q Consensus 879 ~~lLL~GppGtGKT~lA~alA~~~g~--~~i~v~~~el~~~~~g~se--~~l--------~~lf~~a~~~~p~VLfiDEi 946 (1068)
+|+++.|+.|+||++++++++..+.. +|..+-.+---...+|.-+ ..+ ..++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 68999999999999999999999854 6766543333333344321 111 122233322 39999999
Q ss_pred CccCCCCCCCCCCcchHHHHHHHHhccCcc-----------ccCcEEEEEeCCCC---CCCChhhcCCCCcceEEEcCCC
Q 001491 947 DSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATSRP---DLLDAALLRPGRLDRLLFCDFP 1012 (1068)
Q Consensus 947 d~l~~~r~~~~~~~~~~~~~~lL~~Ld~~~-----------~~~~v~viatTn~~---d~ld~al~r~gRfd~~i~~~~p 1012 (1068)
..+ .+.+++.|+..|+.-. .-.++++|+|-|.. ..|.++++. ||+.++.++.|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 988 7899999999997421 12357778764322 338899998 99999999998
Q ss_pred CHHHH
Q 001491 1013 SPRER 1017 (1068)
Q Consensus 1013 ~~~~r 1017 (1068)
+..+.
T Consensus 170 ~~~~~ 174 (584)
T PRK13406 170 ALRDA 174 (584)
T ss_pred ChHHh
Confidence 86643
No 499
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.50 E-value=0.0003 Score=83.97 Aligned_cols=199 Identities=18% Similarity=0.262 Sum_probs=116.2
Q ss_pred ccchhHHHHHHHHHHHhcCCCcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCCceeeeEEEEecccccccc
Q 001491 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK 636 (1068)
Q Consensus 557 ~G~~~~~~~i~~~l~~ll~~~~~~l~~~~~~~~p~~vLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~ 636 (1068)
.+.+......+..+..+.... -++|+.|.+||||-.++|++..... ...+++.++|..+...-
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~-------------~pvll~GEtGtGKe~laraiH~~s~----~~gpfvAvNCaAip~~l 378 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATD-------------LPVLLQGETGTGKEVLARAIHQNSE----AAGPFVAVNCAAIPEAL 378 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcC-------------CCeEecCCcchhHHHHHHHHHhccc----ccCCeEEEEeccchHHh
Confidence 356667777777775554433 5599999999999999999988643 34788999997765322
Q ss_pred h-----hhHHHHHHHHHHHHHh-----cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--cccCcc
Q 001491 637 G-----PIIRQALSNFISEALD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRKSS 704 (1068)
Q Consensus 637 ~-----~~~~~~l~~~f~~a~~-----~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~~~~ 704 (1068)
. |.....+...+...+. ...+.||+|||..+. . .+...|+..+.+-. .-+...
T Consensus 379 iesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p-----------~----~~Qs~LLrVl~e~~v~p~g~~~ 443 (606)
T COG3284 379 IESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMP-----------L----ALQSRLLRVLQEGVVTPLGGTR 443 (606)
T ss_pred hhHHHhccCccccccchhccccccceecCCCccHHHHhhhch-----------H----HHHHHHHHHHhhCceeccCCcc
Confidence 1 1111111111111111 123489999997762 2 33334444444321 111111
Q ss_pred cCCCcEEEEEecCCCCCCChhhhcCCccccc-------ccCCCCCHHH---HHHHHHHHHhhc---cccCCHHHHHHHhh
Q 001491 705 CGIGPIAFVASAQSLEKIPQSLTSSGRFDFH-------VQLPAPAASE---RKAILEHEIQRR---SLECSDEILLDVAS 771 (1068)
Q Consensus 705 ~~~~~V~vIattn~~~~L~~aL~~~gRF~~~-------i~l~~P~~~e---r~~IL~~~l~~~---~l~~~~~~l~~la~ 771 (1068)
...+|.||++|+.. | ..|.+.|||..- +.+..|...+ +...+.+++.++ .+.++++.+..+..
T Consensus 444 -~~vdirvi~ath~d--l-~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~ 519 (606)
T COG3284 444 -IKVDIRVIAATHRD--L-AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLA 519 (606)
T ss_pred -eeEEEEEEeccCcC--H-HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHh
Confidence 22368999998863 1 234445566532 2344444433 344455554433 46688888887777
Q ss_pred ccCCCCchhHHHHHHHHHHH
Q 001491 772 KCDGYDAYDLEILVDRTVHA 791 (1068)
Q Consensus 772 ~t~g~s~~DL~~Lv~~a~~~ 791 (1068)
+..-.+-++|.++++.++..
T Consensus 520 ~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 520 YRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred CCCCCcHHHHHHHHHHHHHc
Confidence 66656889999999887643
No 500
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0016 Score=72.75 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=82.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCCc------------------eeeeEEEEecccccccchhhHHHHHHHHHHH
Q 001491 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISE 650 (1068)
Q Consensus 589 ~p~~vLL~GppGtGKTtLaraLA~~L~~~~~------------------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~ 650 (1068)
.+..+||+|| .||+++|+++|+.+..... ....+..+.... ..-..+.++.....+...
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-QVIKTDTIRELVKNFSQS 99 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC-CcCCHHHHHHHHHHHhhC
Confidence 3466999996 6899999999998764321 011222232211 011234444444333332
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCcccCCCcEEEEEecCCCCCCChhhhcCC
Q 001491 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1068)
Q Consensus 651 a~~~~PsILfIDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~V~vIattn~~~~L~~aL~~~g 730 (1068)
.......|++||++|.+.. .-.+.|+..+++... ++++|..|+.++.+.|.++|
T Consensus 100 p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEEPp~---------~t~~iL~t~~~~~lLpTI~S-- 153 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEEPQS---------EIYIFLLTNDENKVLPTIKS-- 153 (290)
T ss_pred cccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChhhCchHHHH--
Confidence 2333446999999999841 445667777777543 37888888889999999999
Q ss_pred cccccccCCCCCHHHHHHHHH
Q 001491 731 RFDFHVQLPAPAASERKAILE 751 (1068)
Q Consensus 731 RF~~~i~l~~P~~~er~~IL~ 751 (1068)
|.. .++|+. +.++..+++.
T Consensus 154 Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 154 RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cce-eeeCCC-cHHHHHHHHH
Confidence 655 677865 5555555554
Done!