Query 001491
Match_columns 1068
No_of_seqs 451 out of 4082
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 16:23:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001491.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_793-796//hhsearch_pdb/001491hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 645.6 41.7 462 550-1035 200-672 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 468.5 22.8 477 550-1049 200-696 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 323.6 22.0 250 550-827 144-393 (405)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 317.2 22.5 261 550-827 473-747 (806)
5 4b4t_L 26S protease subunit RP 1.0 1 1 313.6 20.9 250 550-827 177-426 (437)
6 4b4t_I 26S protease regulatory 1.0 1 1 313.5 20.1 251 549-827 177-427 (437)
7 4b4t_M 26S protease regulatory 1.0 1 1 312.8 17.6 254 550-831 177-430 (434)
8 4b4t_H 26S protease regulatory 1.0 1 1 310.3 21.1 249 550-826 205-453 (467)
9 4b4t_K 26S protease regulatory 1.0 1 1 308.3 19.1 248 550-825 168-416 (428)
10 4b4t_J 26S protease regulatory 1.0 1 1 305.4 24.2 214 839-1052 143-370 (405)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=645.57 Aligned_cols=462 Identities=33% Similarity=0.566 Sum_probs=410.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 44223431103489999999997-41997200131028999962999968988199999999999425775011699972
Q 001491 550 DSNVSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~e~i~~-~l~~~s~~l~~~~~~~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~i~ 628 (1068)
...+.+++|++.+++++.+.+.. +.. +++|..++..+|+|+|||||||||||++|+++|++++ .+++.++
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~---p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~ 270 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRH---PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLIN 270 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHC---CGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEE
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHCCC---HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CEEEEEE
T ss_conf 999035149999999999999987519---8988635899997589779899988999999999719------8399997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 26444663256999999999999806990999926301104899999999833699999999999975033467655778
Q 001491 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1068)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1068)
|.++.+.+.+..++.++.+|..|.+++|+||||||+|.+++.+.+..+ .....+...|+..|+.+....
T Consensus 271 ~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~----~~~~riv~~LL~~mdg~~~~~------- 339 (806)
T 3cf2_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG----EVERRIVSQLLTLMDGLKQRA------- 339 (806)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC----TTHHHHHHHHHTHHHHCCGGG-------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCC----HHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 379543331678999999999999729929998510023344577887----399999999999974666669-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 67999943999878922112796332124899999999999999875112567989999784206898701088999999
Q 001491 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~~RF~~~i~l~~P~~~eR~~IL~~~l~~~~l~~~~~~l~~la~~teGys~~DL~~Lv~rA 788 (1068)
+|++|++||+++.+|++++|+|||++.++++.|+.++|.+||+.++++.... .+.++..+|..|+||+++||..+|++|
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA 418 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEA 418 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8799996698032698885786361688668979899999999985689988-643899999756899899999999999
Q ss_pred HHHHHHHHCCCC----C--CCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999986200368----8--6333456654100043320002122000122246689887777778625899999999714
Q 001491 789 VHAAVGRYLHSD----S--SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIEL 862 (1068)
Q Consensus 789 ~~~a~~r~~~~~----~--~~~~~~~~~it~edf~~Al~~~~P~slr~v~~~~~~~~~~~~~~i~gl~~~k~~L~~~~~~ 862 (1068)
.+.+.+|..... . .........++.+||..|+..+.|+++++.....+. +.|++++|++++++.+.+.+.|
T Consensus 419 ~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~---v~w~diggl~~~k~~l~e~v~~ 495 (806)
T 3cf2_A 419 ALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ---VTWEDIGGLEDVKRELQELVQY 495 (806)
T ss_dssp HHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCC---CCSTTCCSCHHHHHHHTTTTTT
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCC---CCHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999984145120001332045522556519999999972878311234445788---7888817889999999999975
Q ss_pred CCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 67713466308966444099987999975599999999919938998350023330045378999999998629996999
Q 001491 863 PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLF 942 (1068)
Q Consensus 863 ~~~~~~~~~~~~l~~~~~iLL~GppGtGKT~la~~iA~~~~~~~i~v~~~el~~~~~G~se~~vr~if~~A~~~~p~VLf 942 (1068)
|.+++..|.+.+++++.++|||||||||||++|+++|.+++.+|+.+++++++++|+|++++.++.+|..|+...|||||
T Consensus 496 p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iif 575 (806)
T 3cf2_A 496 PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLF 575 (806)
T ss_dssp TTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 66689999714888886079866877896399999999838966874241121033436899999999999972996352
Q ss_pred EECCCCCCCCCCCC---CCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 94699437889999---987532789999974017211596899996799998785210989836399917999999999
Q 001491 943 FDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD 1019 (1068)
Q Consensus 943 iDEid~l~~~~~~~---~~~~~~~v~~~ll~~ld~~~~~~~v~viatTn~~d~ld~allr~gR~~~~i~~~~p~~~er~~ 1019 (1068)
|||+|++++.|+.. ..++.++++++||++||++....+|+||+|||+|+.||+|++|||||++.|++++|+.++|.+
T Consensus 576 iDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~ 655 (806)
T 3cf2_A 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp CSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHH
T ss_pred CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHH
T ss_conf 04256776315888889866999999999999748787799899993798043898471778550799979969999999
Q ss_pred HHHHHHHHH-CCCCCCC
Q ss_conf 999988833-0689997
Q 001491 1020 ILKVISRKV-CDTSIPF 1035 (1068)
Q Consensus 1020 Il~~~~~~~-~~~~id~ 1035 (1068)
||+.+++++ ....+|+
T Consensus 656 il~~~l~~~~~~~~~dl 672 (806)
T 3cf2_A 656 ILKANLRKSPVAKDVDL 672 (806)
T ss_dssp TTTTTSSCC--CCC---
T ss_pred HHHHHHCCCCCCCCCCH
T ss_conf 99998567999877899
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=468.47 Aligned_cols=477 Identities=33% Similarity=0.534 Sum_probs=399.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 44223431103489999999997419972001310289999629999689881999999999994257750116999722
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~e~i~~~l~~~s~~l~~~~~~~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.+++|++.+++.+.+.+...+. .+.+|..++..++.++||+||||||||++++++++.++ .+++.++|
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~--~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~------~~~i~v~~ 271 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING 271 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHH--CGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT------CEEEEEEH
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC------CCEEEEEC
T ss_conf 89988828809999999999998742--98999863889997389989399987999999999719------96899975
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 64446632569999999999998069909999263011048999999998336999999999999750334676557786
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
.++.+...+.....+..+|+.+....|+++|+||+|.+.+.+... .......+...|...++..... ..
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~~~~~Ll~ll~g~~~~-------~~ 340 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQR-------AH 340 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC----CSHHHHHHHHHHHHHHHSSCTT-------SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHCCC-------CC
T ss_conf 576544101589999999999986499579830077751114666----3168899999999986541146-------61
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 79999439998789221127963321248999999999999998751125679899997842068987010889999999
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~~L~s~~RF~~~i~l~~P~~~eR~~IL~~~l~~~~l~~~~~~l~~la~~teGys~~DL~~Lv~rA~ 789 (1068)
+++|+++|+++.+++++.+++||+..+.++.|+.++|.+|++.++....+. .+..+..++..++||+++|+..++..+.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~ 419 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 787602398100499986465544435569999999999999987338776-2200677777614753689999999999
Q ss_pred HHHHHHHCCCCC------CCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 999862003688------63334566541000433200021220001222466898877777786258999999997146
Q 001491 790 HAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP 863 (1068)
Q Consensus 790 ~~a~~r~~~~~~------~~~~~~~~~it~edf~~Al~~~~P~slr~v~~~~~~~~~~~~~~i~gl~~~k~~L~~~~~~~ 863 (1068)
..+.++...... .........++.+||..++....|...+......+ ...|++++|++++++.+.+.+.++
T Consensus 420 ~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~---~v~~~di~gl~~vk~~l~~~v~~~ 496 (806)
T 1ypw_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVP---QVTWEDIGGLEDVKRELQELVQYP 496 (806)
T ss_dssp HHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCC---CCSSCSSSCCCCHHHHHHTTTTSS
T ss_pred HHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC---CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99876420101155420101244455555665311112357144420002575---421111244302222189999755
Q ss_pred CCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 77134663089664440999879999755999999999199389983500233300453789999999986299969999
Q 001491 864 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFF 943 (1068)
Q Consensus 864 ~~~~~~~~~~~l~~~~~iLL~GppGtGKT~la~~iA~~~~~~~i~v~~~el~~~~~G~se~~vr~if~~A~~~~p~VLfi 943 (1068)
.+++..+...++.++.++||+||||||||++|+++|..++.+|+.++++++.++|+|.++..++.+|..|+...|||+||
T Consensus 497 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~i 576 (806)
T 1ypw_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp SSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCC
T ss_pred HHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 53639897548887753689779998789999999998489879986167655305754788999999987069859999
Q ss_pred ECCCCCCCCCCCCC---CCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 46994378899999---875327899999740172115968999967999987852109898363999179999999999
Q 001491 944 DEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDI 1020 (1068)
Q Consensus 944 DEid~l~~~~~~~~---~~~~~~v~~~ll~~ld~~~~~~~v~viatTn~~d~ld~allr~gR~~~~i~~~~p~~~er~~I 1020 (1068)
||+|.+++.++... .+...+++++|+.+|++.....+++||+|||+++.+|++++|||||+..+++++|+.++|.+|
T Consensus 577 DEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~I 656 (806)
T 1ypw_A 577 DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI 656 (806)
T ss_dssp SSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHH
T ss_pred ECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHH
T ss_conf 87445421126877776416899999999987545666876999843871227987837655673055599799999999
Q ss_pred HHHHHHHH-CCC----------CCCCCHHHHHHHHHHHHH
Q ss_conf 99988833-068----------999734568999999785
Q 001491 1021 LKVISRKV-CDT----------SIPFSSLFCNELLICKLW 1049 (1068)
Q Consensus 1021 l~~~~~~~-~~~----------~id~~~~~~~~~~~~~l~ 1049 (1068)
++.++++. ... ...|++.....++..+..
T Consensus 657 l~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~ 696 (806)
T 1ypw_A 657 LKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACK 696 (806)
T ss_dssp TTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9998645999752279999973500599999999999999
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=323.61 Aligned_cols=250 Identities=22% Similarity=0.349 Sum_probs=215.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 44223431103489999999997419972001310289999629999689881999999999994257750116999722
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~e~i~~~l~~~s~~l~~~~~~~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~i~~ 629 (1068)
+.++.+++|++.+++++.+.+...+. .+++|..++.++|+|+|||||||||||++|+++|++++ .+++.+++
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~--~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~~ 215 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVK--HPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVSG 215 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC------CCCEEEEH
T ss_conf 99888828889999999999999874--99999867999888258858999987899999998518------88528886
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 64446632569999999999998069909999263011048999999998336999999999999750334676557786
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+++...+.|...+.++.+|..|..++|+||||||+|.+++.+.+..+.. ..........|++.||.+.... +
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~-~~~~~~~l~~lL~~lDg~~~~~-------~ 287 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG-DSEVQRTMLELLNQLDGFETSK-------N 287 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGG-GGHHHHHHHHHHHHHHTTTCCC-------C
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC-------C
T ss_conf 8951133546899999999999870994676533411115778889997-6899999999999604338888-------7
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 79999439998789221127963321248999999999999998751125679899997842068987010889999999
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~~L~s~~RF~~~i~l~~P~~~eR~~IL~~~l~~~~l~~~~~~l~~la~~teGys~~DL~~Lv~rA~ 789 (1068)
|++|+|||+++.+|++++|+|||+..++++.|+.++|.+||+.++++..+. .+.++..+|..|+||+|+||+.+|..|.
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~ 366 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAG 366 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 578812698144899672877676699769969999999999985599999-6579999998779999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE
Q ss_conf 99986200368863334566541000433200021220
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~it~edf~~Al~~~~P~s 827 (1068)
..|.++. ...++++||..|+....+..
T Consensus 367 ~~Air~~-----------~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 367 MYALRER-----------RIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp HHHHHTT-----------CSBCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCC-----------CCCCCHHHHHHHHHHHHCCC
T ss_conf 9999869-----------98759999999999985726
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=317.23 Aligned_cols=261 Identities=21% Similarity=0.306 Sum_probs=216.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 44223431103489999999997419972001310289999629999689881999999999994257750116999722
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~e~i~~~l~~~s~~l~~~~~~~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~i~~ 629 (1068)
...+.+++|++..++++.+.+.. ....+.+|...+..+++++|||||||||||++|+++|.+++ .+++.++.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~--p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~------~~f~~v~~ 544 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQY--PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKG 544 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTT--TTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT------CEEEECCH
T ss_pred CCCHHHHCCHHHHHHHHHHHHHH--HHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHC------CCEEEECC
T ss_conf 87888817889999999999975--66689999714888886079866877896399999999838------96687424
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 64446632569999999999998069909999263011048999999998336999999999999750334676557786
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+++..++.+..++.+..+|..|+..+||||||||+|.+++.+....+. ......++...|+..|+.+.... +
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~-~~~~~~rv~~~lL~~mdg~~~~~-------~ 616 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD-GGGAADRVINQILTEMDGMSTKK-------N 616 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSS-------S
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC-------C
T ss_conf 112103343689999999999997299635204256776315888889-86699999999999974878779-------9
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 79999439998789221127963321248999999999999998751125679899997842068987010889999999
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~~L~s~~RF~~~i~l~~P~~~eR~~IL~~~l~~~~l~~~~~~l~~la~~teGys~~DL~~Lv~rA~ 789 (1068)
|++|++||+++.||++++|+|||+..++++.|+.++|.+||+.++++..+. .+.++..+|..|+||+|+||+.+|+.|.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHH
T ss_pred EEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 899993798043898471778550799979969999999999985679998-7789999997689999999999999999
Q ss_pred HHHHHHHCCCCC--------------CCCCCCCCCCCHHHHHHHHCCCCCCE
Q ss_conf 999862003688--------------63334566541000433200021220
Q 001491 790 HAAVGRYLHSDS--------------SFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1068)
Q Consensus 790 ~~a~~r~~~~~~--------------~~~~~~~~~it~edf~~Al~~~~P~s 827 (1068)
..++++...... .........++++||..|++...|+-
T Consensus 696 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 696 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp HHHHHHHHC-----------------------CCC----CCTTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999985644433301574100123345668647999999998679999
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=313.56 Aligned_cols=250 Identities=20% Similarity=0.290 Sum_probs=215.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 44223431103489999999997419972001310289999629999689881999999999994257750116999722
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~e~i~~~l~~~s~~l~~~~~~~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~i~~ 629 (1068)
+.++.+++|++.+++++.+.+...+. .+.+|..++.++|+|+|||||||||||++|+++|++++ .+++.+++
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~--~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~ 248 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLK--NPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPA 248 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEEEH
T ss_conf 98966717859999999999999874--99999867989787699989999849999999999859------99899841
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 64446632569999999999998069909999263011048999999998336999999999999750334676557786
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+++...+.+...+.+..+|..+..++|+||||||+|.+++.+........ .........|+..|+.+.... +
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~-~~~~~~l~~lL~~lDg~~~~~-------~ 320 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSAD-REIQRTLMELLTQMDGFDNLG-------Q 320 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSST-THHHHHHHHHHHHHHSSSCTT-------S
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCC-------C
T ss_conf 46205520178999999999998638964642044333333344788753-689999999999834666779-------8
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 79999439998789221127963321248999999999999998751125679899997842068987010889999999
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~~L~s~~RF~~~i~l~~P~~~eR~~IL~~~l~~~~l~~~~~~l~~la~~teGys~~DL~~Lv~rA~ 789 (1068)
++||+|||+++.+|++++|+|||+.+|+++.|+.++|.+||+.++.+.... ++.++..+|..|+||+|+||+.+|..|.
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~ 399 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAG 399 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 699993399033189782777102001359969999999999986589998-6458999997689999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE
Q ss_conf 99986200368863334566541000433200021220
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~it~edf~~Al~~~~P~s 827 (1068)
..|.++. ...++.+||..|+....|..
T Consensus 400 ~~air~~-----------~~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 400 FFAIRDD-----------RDHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp HHHHHTT-----------CSSBCHHHHHHHHHHHHHTC
T ss_pred HHHHHCC-----------CCCCCHHHHHHHHHHHHHCC
T ss_conf 9999869-----------98779999999999987503
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=313.51 Aligned_cols=251 Identities=20% Similarity=0.289 Sum_probs=215.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 44422343110348999999999741997200131028999962999968988199999999999425775011699972
Q 001491 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1068)
Q Consensus 549 ~~~~~~~l~G~~~~~~~i~e~i~~~l~~~s~~l~~~~~~~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~i~ 628 (1068)
-+.++.+++|++.+++++.+.+...+. .+.+|..++.++|+|+|||||||||||++|+++|++++ .+++.++
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~--~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~ 248 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLT--HPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIV 248 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHH--CCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCCEECCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHC------CCEEEEE
T ss_conf 998600557699999999999999876--99999867999777884488999639999999999859------9879988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 26444663256999999999999806990999926301104899999999833699999999999975033467655778
Q 001491 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1068)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1068)
++++...+.+...+.++.+|..|...+|+||||||+|.+++.+.......... .......|++.++.+....
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~-~~~~l~~LL~~lDg~~~~~------- 320 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGERE-IQRTMLELLNQLDGFDDRG------- 320 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCH-HHHHHHHHHHHHHHCCCSS-------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCCCC-------
T ss_conf 79953144766999999999999865991898761222036677888776589-9999999999724767889-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 67999943999878922112796332124899999999999999875112567989999784206898701088999999
Q 001491 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~~RF~~~i~l~~P~~~eR~~IL~~~l~~~~l~~~~~~l~~la~~teGys~~DL~~Lv~rA 788 (1068)
+|++|+|||+++.||++++|+|||+.+|+|+.|+.++|.+||+.++.+..+. .+.++..+|..|+||+|+||+.+|..|
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA 399 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEA 399 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9799995798055599886488602799808969999999999996489999-767999999767999899999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE
Q ss_conf 999986200368863334566541000433200021220
Q 001491 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1068)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~it~edf~~Al~~~~P~s 827 (1068)
...|.++. ...++.+||..|+....|..
T Consensus 400 ~~~Air~~-----------~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 400 GLLALRER-----------RMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHTT-----------CSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC-----------CCCCCHHHHHHHHHHHHCCC
T ss_conf 99999848-----------99669999999999870798
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=312.78 Aligned_cols=254 Identities=20% Similarity=0.312 Sum_probs=217.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 44223431103489999999997419972001310289999629999689881999999999994257750116999722
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~e~i~~~l~~~s~~l~~~~~~~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~i~~ 629 (1068)
..++.+++|++.+++++.+.+...+. .+.+|...+.++|+|+|||||||||||++|+++|++++ .+++.+++
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~--~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~~ 248 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMK--RADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN------ATFLKLAA 248 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHH--CSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHCCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEEEH
T ss_conf 99867609579999999999999974--99999867999887268779499988999999999959------98899864
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 64446632569999999999998069909999263011048999999998336999999999999750334676557786
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+...+.|...+.++.+|..+..++|+||||||+|.+++.+.+...+.. .........|++.|+.+.... +
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~-~~~~~~~~~lL~~ldg~~~~~-------~ 320 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGD-REVQRTMLELLNQLDGFSSDD-------R 320 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTT-HHHHHHHHHHHHHHTTSCSSC-------S
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCC-------C
T ss_conf 46431345638999999999998619908960332566522577888874-699999999999713668889-------9
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 79999439998789221127963321248999999999999998751125679899997842068987010889999999
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~~L~s~~RF~~~i~l~~P~~~eR~~IL~~~l~~~~l~~~~~~l~~la~~teGys~~DL~~Lv~rA~ 789 (1068)
|+||||||+++.+|+++.|+|||+.+++++.|+.++|.+||+.++++.... .+.++..+|..|+||+|+||+.+|..|.
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 899994899223399671577403899808959999999999985689998-7679999998689989999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECC
Q ss_conf 999862003688633345665410004332000212200012
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDI 831 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~it~edf~~Al~~~~P~slr~v 831 (1068)
..|.++. ...++.+||..|+....|...+.+
T Consensus 400 ~~a~r~~-----------~~~i~~~Df~~Al~~v~~~~~~~i 430 (434)
T 4b4t_M 400 MIALRNG-----------QSSVKHEDFVEGISEVQARKSKSV 430 (434)
T ss_dssp HHHHHHT-----------CSSBCHHHHHHHHHSCSSSCCCCC
T ss_pred HHHHHCC-----------CCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 9999869-----------987699999999999737777573
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=310.33 Aligned_cols=249 Identities=20% Similarity=0.253 Sum_probs=212.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 44223431103489999999997419972001310289999629999689881999999999994257750116999722
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~e~i~~~l~~~s~~l~~~~~~~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~i~~ 629 (1068)
+.++.+++|++.+++++.+.+...+. .+++|..++.++|+|+|||||||||||++|+++|++++ .+++.+++
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~--~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~ 276 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLL--SPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIG 276 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHC--CHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC------CCEEEEEH
T ss_conf 99878854599999999999998842--99999877999998147648999809999999984468------98699886
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 64446632569999999999998069909999263011048999999998336999999999999750334676557786
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+.+...+.|...+.++.+|..|..++|+||||||+|.+++.+.+..... ..........+++.|+.+.... +
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~-~~~~~~~l~~lL~~lDg~~~~~-------~ 348 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGG-DNEVQRTMLELITQLDGFDPRG-------N 348 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGG-GGHHHHHHHHHHHHHHSSCCTT-------T
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC-------C
T ss_conf 9950266778999999999998761784675223211013556767786-2789999999999865557888-------3
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 79999439998789221127963321248999999999999998751125679899997842068987010889999999
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1068)
Q Consensus 710 V~vIattn~~~~L~~~L~s~~RF~~~i~l~~P~~~eR~~IL~~~l~~~~l~~~~~~l~~la~~teGys~~DL~~Lv~rA~ 789 (1068)
|++|+|||+++.+|++++|+|||+++++|+.|+.++|.+||+.++++..+. .+.++..+|..|+||+|+||+.+|..|.
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa 427 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAG 427 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 798828789311795463666550799838969999999999985489998-7779999997779999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 9998620036886333456654100043320002122
Q 001491 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1068)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~it~edf~~Al~~~~P~ 826 (1068)
..|.++. ...++.+||..|+....+.
T Consensus 428 ~~Air~~-----------~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 428 MFAIRAR-----------RKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHT-----------CSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHCC-----------CCCCCHHHHHHHHHHHHCC
T ss_conf 9999838-----------8766999999999999647
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=308.27 Aligned_cols=248 Identities=20% Similarity=0.302 Sum_probs=213.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 44223431103489999999997419972001310289999629999689881999999999994257750116999722
Q 001491 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1068)
Q Consensus 550 ~~~~~~l~G~~~~~~~i~e~i~~~l~~~s~~l~~~~~~~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~~~~i~~ 629 (1068)
+.++.+++|++.+++++.+.+...+. .+.+|..++.++|+|+|||||||||||++|+++|++++ .+++.+++
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~--~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~~ 239 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLV--QADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNG 239 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEEG
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEEEC
T ss_conf 99888851699999999999999873--99999867999886588889899888999999999867------99699933
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 64446632569999999999998069909999263011048999999998336999999999999750334676557786
Q 001491 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1068)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1068)
+++...+.|...+.++.+|..|..++|+|+||||+|.+++.+......... ....+...|++.|+.+.... +
T Consensus 240 ~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~-~~~r~l~~lL~~ldg~~~~~-------~ 311 (428)
T 4b4t_K 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDR-EVQRILIELLTQMDGFDQST-------N 311 (428)
T ss_dssp GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCC-HHHHHHHHHHHHHHHSCSSC-------S
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCH-HHHHHHHHHHHHHHCCCCCC-------C
T ss_conf 044314546059999999999997399746300224330355678788871-89999999999843878779-------9
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 799994399987892211279633212489-9999999999999875112567989999784206898701088999999
Q 001491 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLP-APAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1068)
Q Consensus 710 V~vIattn~~~~L~~~L~s~~RF~~~i~l~-~P~~~eR~~IL~~~l~~~~l~~~~~~l~~la~~teGys~~DL~~Lv~rA 788 (1068)
|++|+|||+++.+|++++|+|||+..|+|+ +|+.++|..||+.++.+..+. ++.++..+|..|+||+|+||+.+|++|
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCCHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 7999961981556966636875159998199999999999999985579999-635899999777998899999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 9999862003688633345665410004332000212
Q 001491 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1068)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~it~edf~~Al~~~~P 825 (1068)
...|.++. ...++.+||..|+....+
T Consensus 391 ~~~a~r~~-----------~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 391 GLRAVRKN-----------RYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHTT-----------CSSBCHHHHHHHHHHHSC
T ss_pred HHHHHHCC-----------CCCCCHHHHHHHHHHHHC
T ss_conf 99999879-----------987799999999997617
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=305.35 Aligned_cols=214 Identities=39% Similarity=0.596 Sum_probs=192.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 88777777862589999999971467713466308966444099987999975599999999919938998350023330
Q 001491 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1068)
Q Consensus 839 ~~~~~~~i~gl~~~k~~L~~~~~~~~~~~~~~~~~~l~~~~~iLL~GppGtGKT~la~~iA~~~~~~~i~v~~~el~~~~ 918 (1068)
+.+.|+||+|++++++.|++.+.+|++++++|.+.++++++|+|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHCCC
T ss_conf 99988882888999999999999987499999867999888258858999987899999998518885288868951133
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC---CHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 045378999999998629996999946994378899999875---32789999974017211596899996799998785
Q 001491 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDA 995 (1068)
Q Consensus 919 ~G~se~~vr~if~~A~~~~p~VLfiDEid~l~~~~~~~~~~~---~~~v~~~ll~~ld~~~~~~~v~viatTn~~d~ld~ 995 (1068)
+|+++..++.+|..|+..+||||||||+|+++++|+....+. ..+++++||++||++....+|+||+|||+|+.|||
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDp 302 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDP 302 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHCCH
T ss_conf 54689999999999987099467653341111577888999768999999999996043388887578812698144899
Q ss_pred HHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH-CCCCCC----------CCHHHHHHHHHHHHHHHH
Q ss_conf 210989836399917999999999999988833-068999----------734568999999785241
Q 001491 996 ALLRPGRLDRLLFCDFPSPRERLDILKVISRKV-CDTSIP----------FSSLFCNELLICKLWHFF 1052 (1068)
Q Consensus 996 allr~gR~~~~i~~~~p~~~er~~Il~~~~~~~-~~~~id----------~~~~~~~~~~~~~l~~~~ 1052 (1068)
|++||||||+.|++++|+.++|.+||+.+++++ ....+| |++.....++..+....+
T Consensus 303 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 303 ALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 67287767669976996999999999998559999965799999987799999999999999999999
Done!