BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001492
(1067 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/486 (31%), Positives = 230/486 (47%), Gaps = 71/486 (14%)
Query: 189 DTGGQIKYVVELARALARMPGVYRVDLFSRQVSSPEVDWSYGEPAEMLTGGPEDDGIEVG 248
D GGQ+ YV E++ ALA M GV +VD+ +R++ + +W PE G E+
Sbjct: 31 DFGGQLVYVKEVSLALAEM-GV-QVDIITRRIK--DENW------------PEFSG-EID 73
Query: 249 ---ESSGAYIIRIPFGPRDKYLRKELLWPYIQEFVDGALAHCLNMSKVLGEQIGGGQPVW 305
E++ I+RIPFG DK+L KE LWPY+ E+V+ +N + G+ +
Sbjct: 74 YYQETNKVRIVRIPFGG-DKFLPKEELWPYLHEYVN----KIINFYREEGK--------F 120
Query: 306 PYVIHGHYXXXXXXXXXXXXXXNVPMVLTGHSLGRNKLEQLLKQGRQSKEDINSTYKIMR 365
P V+ HY +P TGHSLG K+E+L KE ++ +K R
Sbjct: 121 PQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKE-MDERFKFHR 179
Query: 366 RIEGEELSLDAAELVITSTKQEIDEQWGLYDGFDVKLEKVLRARARRGVNCHGRYMPRMV 425
RI E L++ A+ +I ST QE ++G Y R VN +
Sbjct: 180 RIIAERLTMSYADKIIVSTSQE---RFGQYS----------HDLYRGAVNVEDD--DKFS 224
Query: 426 VIPPGMDFSNVVAQEDTPEVDGELTSLIGGTDGSSPKAIPAIWSDVMRFLTNPHKPMILA 485
VIPPG++ + V E ++ ++T + GS +PAI +A
Sbjct: 225 VIPPGVN-TRVFDGEYGDKIKAKITKYLERDLGSERMELPAI----------------IA 267
Query: 486 LSRPDPKKNITTLLKAFGECRPLRELANLTLIM-GNRDDIEEMSSGN---ASVLITVLKL 541
SR D KKN L++A+ + + L++ ANL L + G + E+ S +L +++L
Sbjct: 268 SSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIEL 327
Query: 542 IDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVA 601
ID D G+V+ + Q ++ Y A VF + EPFGL +EA A GLP V
Sbjct: 328 IDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVV 387
Query: 602 TKNGGPVDIHRALNNGLLVDPHDQQAIADALLKLVSEKNLWVECRKNGWKNI-HLFSWPE 660
T+NGGP +I G+LVDP D + IA LLK + W ++ G + + ++W E
Sbjct: 388 TRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQE 447
Query: 661 HCRTYL 666
R YL
Sbjct: 448 TARGYL 453
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 142/535 (26%), Positives = 238/535 (44%), Gaps = 86/535 (16%)
Query: 168 IVLISLHGLVRGENMELGRDSDTGGQIKYVVELARAL-------ARMPGVY---RVDLFS 217
+V++S HG +N+ LG DTGGQ+ Y+++ RAL + G+ R+ + +
Sbjct: 281 VVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILT 338
Query: 218 RQVSSPEVDWSYGEPAEMLTGGPEDDGIEVGESSGAYIIRIPF----GPRDKYLRKELLW 273
R + V + GE E V +S I+R+PF G K++ + +W
Sbjct: 339 RLLPDA-VGTTCGERLE-----------RVYDSEYCDILRVPFRTEKGIVRKWISRFEVW 386
Query: 274 PYIQEFVDGALAHCLNMSKVLGEQIGGGQPVWPYVIHGHYXXXXXXXXXXXXXXNVPMVL 333
PY++ + + A + +SK L + P +I G+Y N+ L
Sbjct: 387 PYLETYTEDA---AVELSKELNGK--------PDLIIGNY-----------SDGNLVASL 424
Query: 334 TGHSLGRNK--LEQLLKQGRQSKEDI-----NSTYKIMRRIEGEELSLDAAELVITSTKQ 386
H LG + + L++ + DI + Y + + +++ + +ITST Q
Sbjct: 425 LAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQ 484
Query: 387 EI---DEQWGLYDGFDVKLEKVLRARARRGVNCHGRYMPRMVVIPPGMDFSNVVAQEDTP 443
EI E G Y+ L R G++ + P+ ++ PG D S +
Sbjct: 485 EIAGSKETVGQYESHTAFTLPGL-YRVVHGIDV---FDPKFNIVSPGADMSIYFPYTEEK 540
Query: 444 EVDGELTSLIGGTDGSSPKAIPAIWSDV-----MRFLTNPHKPMILALSRPDPKKNITTL 498
+ S I ++SDV + L + KP++ ++R D KN++ L
Sbjct: 541 RRLTKFHSEIE----------ELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGL 590
Query: 499 LKAFGECRPLRELANLTLIMGNRDDIEEMSSGNASVLITVLKLIDKYDLYGQVAY-PKHH 557
++ +G+ LRELANL ++ G+R E + + + + LI++Y L GQ +
Sbjct: 591 VEWYGKNTRLRELANLVVVGGDRRK-ESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQM 649
Query: 558 KQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNG 617
+ E+YR TKG F+ PAL E FGLT++EA GLP AT GGP +I +G
Sbjct: 650 DRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSG 709
Query: 618 LLVDPH--DQQA--IADALLKLVSEKNLWVECRKNGWKNI-HLFSWPEHCRTYLT 667
+DP+ DQ A +AD K + + W E K G + I ++W + + LT
Sbjct: 710 FHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 142/539 (26%), Positives = 235/539 (43%), Gaps = 94/539 (17%)
Query: 168 IVLISLHGLVRGENMELGRDSDTGGQIKYVVELARALA-------RMPGVY---RVDLFS 217
+V++S HG +N+ LG DTGGQ+ Y+++ RAL + G+ R+ + +
Sbjct: 281 VVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEXLQRIKQQGLNIKPRILILT 338
Query: 218 RQVSSPEVDWSYGEPAEMLTGGPEDDGIEVGESSGAYIIRIPF----GPRDKYLRKELLW 273
R + V + GE E V +S I+R+PF G K++ + +W
Sbjct: 339 RLLPDA-VGTTCGERLE-----------RVYDSEYCDILRVPFRTEKGIVRKWISRFEVW 386
Query: 274 PYIQEFVDGALAHCLNMSKVLGEQIGGGQPVWPYVIHGHYXXXXXXXXXXXXXXNVPMVL 333
PY++ + + A + +SK L + P +I G+Y N+ L
Sbjct: 387 PYLETYTEDA---AVELSKELNGK--------PDLIIGNYSDG-----------NLVASL 424
Query: 334 TGHSLGRNK--LEQLLKQGRQSKEDI-----NSTYKIMRRIEGEELSLDAAELVITSTKQ 386
H LG + + L++ + DI + Y + + + + + +ITST Q
Sbjct: 425 LAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTFQ 484
Query: 387 EI---DEQWGLYDGFDVKLEKVLRARARRGVNCHGRYMPRMVVIPPGMD----FSNVVAQ 439
EI E G Y+ L R G++ + P+ ++ PG D F +
Sbjct: 485 EIAGSKETVGQYESHTAFTLPGL-YRVVHGIDV---FDPKFNIVSPGADXSIYFPYTEEK 540
Query: 440 EDTPEVDGELTSLIGGTDGSSPKAIPAIWSDV-----MRFLTNPHKPMILALSRPDPKKN 494
+ E+ L+ +SDV + L + KP++ +R D KN
Sbjct: 541 RRLTKFHSEIEELL--------------YSDVENKEHLCVLKDKKKPILFTXARLDRVKN 586
Query: 495 ITTLLKAFGECRPLRELANLTLIMGNRDDIEEMSSGNASVLITVLKLIDKYDLYGQVAY- 553
++ L++ +G+ LRELANL ++ G+R E + + LI++Y L GQ +
Sbjct: 587 LSGLVEWYGKNTRLRELANLVVVGGDRRK-ESKDNEEKAEXKKXYDLIEEYKLNGQFRWI 645
Query: 554 PKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRA 613
+ E+YR TKG F+ PAL E FGLT++EA GLP AT GGP +I
Sbjct: 646 SSQXDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVH 705
Query: 614 LNNGLLVDPH--DQQA--IADALLKLVSEKNLWVECRKNGWKNI-HLFSWPEHCRTYLT 667
+G +DP+ DQ A +AD K + + W E K G + I ++W + + LT
Sbjct: 706 GKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 110/495 (22%), Positives = 189/495 (38%), Gaps = 106/495 (21%)
Query: 166 LYIVLISLHGLVRGENMELGRDSDTGGQIKYVVELARALARMPGVYRVDLFSRQVSSPEV 225
+ + +IS+H ++ D+GG Y++ A LA+ G+ VD+++R
Sbjct: 1 MRVAMISMHT----SPLQQPGTGDSGGMNVYILSTATELAKQ-GI-EVDIYTRATRP--- 51
Query: 226 DWSYGEPAEMLTGGPEDDGIEVGESSGAYIIRIPFGPRDKYLRKELLWPYIQEFVDGALA 285
S GE + V E+ +I I GP + L KE L + F G L+
Sbjct: 52 --SQGEI------------VRVAEN--LRVINIAAGPYEG-LSKEELPTQLAAFTGGMLS 94
Query: 286 HCLNMSKVLGEQIGGGQPVWPYVIHGHYXXXXXXXXXXXXXXNVPMVLTGHSLGRNKLEQ 345
KV + +IH HY +P++ T H+L K
Sbjct: 95 FT-RREKVTYD-----------LIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK--- 139
Query: 346 LLKQGRQSKEDINSTYKIMRRIEGEELSLDAAELVITSTKQEIDEQWGLYDGFDVKLEKV 405
++D ++ RRI ++L +D A+++ +T++E+ + YD
Sbjct: 140 -----NSYRDDSDTPESEARRICEQQL-VDNADVLAVNTQEEMQDLMHHYDADP------ 187
Query: 406 LRARARRGVNCHGRYMPRMVVIPPGMDFSNVVAQEDTPEVDGELTSLIGGTDGSSPKAIP 465
R+ V+ PG D EL S G D ++ ++
Sbjct: 188 ----------------DRISVVSPGADV--------------ELYS--PGNDRATERS-- 213
Query: 466 AIWSDVMRFLTNP-HKPMILALSRPDPKKNITTLLKAFGECRPLRELANLTLIMGNRDDI 524
R L P H ++ + R P K L+KA NL +I+
Sbjct: 214 ------RRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGG--- 264
Query: 525 EEMSSGNASVLITVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEP 584
SG + T + ++ + ++ + ++ +YR A + P+ E
Sbjct: 265 ---PSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAA----DIVAVPSFNES 317
Query: 585 FGLTLIEAAAHGLPMVATKNGG-PVDIHRALNNGLLVDPHDQQAIADALLKLVSEKNLWV 643
FGL +EA A G P++A + GG P+ + GLLVD H A ADAL L+ + +
Sbjct: 318 FGLVAMEAQASGTPVIAARVGGLPIAVAEG-ETGLLVDGHSPHAWADALATLLDDDETRI 376
Query: 644 ECRKNGWKNIHLFSW 658
++ ++ FSW
Sbjct: 377 RMGEDAVEHARTFSW 391
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 109/499 (21%), Positives = 189/499 (37%), Gaps = 106/499 (21%)
Query: 162 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQIKYVVELARALARMPGVYRVDLFSRQVS 221
+ + + +IS+H ++ D+GG Y++ A LA+ G+ VD+++R
Sbjct: 17 RGSHMRVAMISMHT----SPLQQPGTGDSGGMNVYILSTATELAKQ-GI-EVDIYTRATR 70
Query: 222 SPEVDWSYGEPAEMLTGGPEDDGIEVGESSGAYIIRIPFGPRDKYLRKELLWPYIQEFVD 281
S GE + V E+ +I I GP + L KE L + F
Sbjct: 71 P-----SQGEI------------VRVAEN--LRVINIAAGPYEG-LSKEELPTQLAAFTG 110
Query: 282 GALAHCLNMSKVLGEQIGGGQPVWPYVIHGHYXXXXXXXXXXXXXXNVPMVLTGHSLGRN 341
G L+ + V +IH HY +P++ T H+L
Sbjct: 111 GMLSFTRR------------EKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAV 158
Query: 342 KLEQLLKQGRQSKEDINSTYKIMRRIEGEELSLDAAELVITSTKQEIDEQWGLYDGFDVK 401
K ++D ++ RRI ++L +D A+++ +T++E+ + YD
Sbjct: 159 K--------NSYRDDSDTPESEARRICEQQL-VDNADVLAVNTQEEMQDLMHHYDADP-- 207
Query: 402 LEKVLRARARRGVNCHGRYMPRMVVIPPGMDFSNVVAQEDTPEVDGELTSLIGGTDGSSP 461
R+ V+ PG D EL S G D ++
Sbjct: 208 --------------------DRISVVSPGADV--------------ELYS--PGNDRATE 231
Query: 462 KAIPAIWSDVMRFLTNP-HKPMILALSRPDPKKNITTLLKAFGECRPLRELANLTLIMGN 520
++ R L P H ++ + R P K L+KA NL +I+
Sbjct: 232 RS--------RRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICG 283
Query: 521 RDDIEEMSSGNASVLITVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPA 580
SG + T + ++ + ++ + ++ +YR A + P+
Sbjct: 284 G------PSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAA----DIVAVPS 333
Query: 581 LVEPFGLTLIEAAAHGLPMVATKNGG-PVDIHRALNNGLLVDPHDQQAIADALLKLVSEK 639
E FGL +EA A G P++A + GG P+ + GLLVD H A ADAL L+ +
Sbjct: 334 FNESFGLVAMEAQASGTPVIAARVGGLPIAVAEG-ETGLLVDGHSPHAWADALATLLDDD 392
Query: 640 NLWVECRKNGWKNIHLFSW 658
+ ++ ++ FSW
Sbjct: 393 ETRIRMGEDAVEHARTFSW 411
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 131/375 (34%), Gaps = 79/375 (21%)
Query: 306 PYVIHGHYXXXXXXXXXXXXXXNVPMVLTGHSLGRNKLEQLLKQGRQSKEDINSTYKIMR 365
P V+H H +P V T H L ++KL E S
Sbjct: 123 PDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFH-----EAGLSELAPYP 177
Query: 366 RIEGEELSLDAAELVITSTKQEIDEQWGLYDGFDVKLEKVLRARARRGVNCHGRYMPRMV 425
I+ E A++V T ++ + ++WG + F+ K+ V G++C
Sbjct: 178 DIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFN-----GIDC--------- 223
Query: 426 VIPPGMDFSNVVAQEDTPEVDGELTSLIGGTDGSSPKAIPAIWSDVMRFLTNPHKPMILA 485
+ S + D E L S G +G + +
Sbjct: 224 ---SFWNESYLTGSRD--ERKKSLLSKFGMDEGVT----------------------FMF 256
Query: 486 LSRPD-PKKNITTLLKAFGECRPLRELANLTLIMGNRDDIE--------EMSSGNASVLI 536
+ R D +K + LLKA +E + I+ + D E E GN V+
Sbjct: 257 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVIT 316
Query: 537 TVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHG 596
+L +LYG V + I P+ EPFGL +EA G
Sbjct: 317 EMLSREFVRELYGSVDF----------------------VIIPSYFEPFGLVALEAMCLG 354
Query: 597 LPMVATKNGGPVDIHRALNNGLLVDPHDQQAIADALLK-LVSEKNLWVECRKNGWKNIHL 655
+A+ GG DI G+LV D +A+A+LK L ++ + R+N K
Sbjct: 355 AIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMS 413
Query: 656 FSWPEHCRTYLTRVA 670
FSW + Y+ A
Sbjct: 414 FSWEKSAERYVKAYA 428
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 130/371 (35%), Gaps = 79/371 (21%)
Query: 306 PYVIHGHYXXXXXXXXXXXXXXNVPMVLTGHSLGRNKLEQLLKQGRQSKEDINSTYKIMR 365
P V+H H +P V T H L ++KL E S
Sbjct: 123 PDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFH-----EAGLSELAPYP 177
Query: 366 RIEGEELSLDAAELVITSTKQEIDEQWGLYDGFDVKLEKVLRARARRGVNCHGRYMPRMV 425
I+ E A++V T ++ + ++WG + F+ K+ V G++C
Sbjct: 178 DIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFN-----GIDC--------- 223
Query: 426 VIPPGMDFSNVVAQEDTPEVDGELTSLIGGTDGSSPKAIPAIWSDVMRFLTNPHKPMILA 485
+ S + D E L S G +G + +
Sbjct: 224 ---SFWNESYLTGSRD--ERKKSLLSKFGMDEGVT----------------------FMF 256
Query: 486 LSRPD-PKKNITTLLKAFGECRPLRELANLTLIMGNRDDIE--------EMSSGNASVLI 536
+ R D +K + LLKA +E + I+ + D E E GN V+
Sbjct: 257 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVIT 316
Query: 537 TVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHG 596
+L +LYG V + I P+ EPFGL +EA G
Sbjct: 317 EMLSREFVRELYGSVDF----------------------VIIPSYFEPFGLVALEAMCLG 354
Query: 597 LPMVATKNGGPVDIHRALNNGLLVDPHDQQAIADALLK-LVSEKNLWVECRKNGWKNIHL 655
+A+ GG DI G+LV D +A+A+LK L ++ + R+N K
Sbjct: 355 AIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMS 413
Query: 656 FSWPEHCRTYL 666
FSW + Y+
Sbjct: 414 FSWEKSAERYV 424
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 130/371 (35%), Gaps = 79/371 (21%)
Query: 306 PYVIHGHYXXXXXXXXXXXXXXNVPMVLTGHSLGRNKLEQLLKQGRQSKEDINSTYKIMR 365
P V+H H +P V T H L ++KL E S
Sbjct: 124 PDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFH-----EAGLSELAPYP 178
Query: 366 RIEGEELSLDAAELVITSTKQEIDEQWGLYDGFDVKLEKVLRARARRGVNCHGRYMPRMV 425
I+ E A++V T ++ + ++WG + F+ K+ V G++C
Sbjct: 179 DIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFN-----GIDC--------- 224
Query: 426 VIPPGMDFSNVVAQEDTPEVDGELTSLIGGTDGSSPKAIPAIWSDVMRFLTNPHKPMILA 485
+ S + D E L S G +G + +
Sbjct: 225 ---SFWNESYLTGSRD--ERKKSLLSKFGMDEGVT----------------------FMF 257
Query: 486 LSRPD-PKKNITTLLKAFGECRPLRELANLTLIMGNRDDIE--------EMSSGNASVLI 536
+ R D +K + LLKA +E + I+ + D E E GN V+
Sbjct: 258 IGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVIT 317
Query: 537 TVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHG 596
+L +LYG V + I P+ EPFGL +EA G
Sbjct: 318 EMLSREFVRELYGSVDF----------------------VIIPSYFEPFGLVALEAMCLG 355
Query: 597 LPMVATKNGGPVDIHRALNNGLLVDPHDQQAIADALLK-LVSEKNLWVECRKNGWKNIHL 655
+A+ GG DI G+LV D +A+A+LK L ++ + R+N K
Sbjct: 356 AIPIASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMS 414
Query: 656 FSWPEHCRTYL 666
FSW + Y+
Sbjct: 415 FSWEKSAERYV 425
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 523 DIEEMSSGNASVLITVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALV 582
D + + G+ T+L+L+ + +V + KQ +V E+ LA + ++
Sbjct: 241 DAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLG--KQDNVAEL--LAMSDLMLLLSEK-- 294
Query: 583 EPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNGLLVDPHDQQAIADALLKLVSEKNL 641
E FGL L+EA A G+P + T+ GG ++ + + G L + D +AD ++L+ ++ L
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEEL 353
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 523 DIEEMSSGNASVLITVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALV 582
D + + G+ T+L+L+ + +V + KQ +V E+ LA + ++
Sbjct: 261 DAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLG--KQDNVAEL--LAMSDLMLLLSEK-- 314
Query: 583 EPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNGLLVDPHDQQAIADALLKLVSEKNL 641
E FGL L+EA A G+P + T+ GG ++ + + G L + D +AD ++L+ ++ L
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEEL 373
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 481 PMILALSRPDPKKNITTLLKAFGECRPLRELANLTLIMGNRDDIEEMSSGNASVLITVLK 540
P+I SR P+K +L+KA + R A L ++ R + +++
Sbjct: 199 PVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYE--------STLRRLATD 250
Query: 541 LIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMV 600
+ G++ Y +I+ + A+T+G ++ VE G+ +EA A G+P++
Sbjct: 251 VSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVI 307
Query: 601 A-TKNGGPVDIHRALNNGLLVDPHDQQAIADALLKLVSE 638
A T G P + A GL+V+ D +++ L++L+ +
Sbjct: 308 AGTSGGAPETVTPA--TGLVVEGSDVDKLSELLIELLDD 344
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 481 PMILALSRPDPKKNITTLLKAFGECRPLRELANLTLIMGNRDDIEEMSSGNASVLITVLK 540
P+I SR P+K +L+KA + R A L ++ R + +++
Sbjct: 199 PVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYE--------STLRRLATD 250
Query: 541 LIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMV 600
+ G++ Y +I+ + A+T+G ++ VE G+ +EA A G+P++
Sbjct: 251 VSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVI 307
Query: 601 A-TKNGGPVDIHRALNNGLLVDPHDQQAIADALLKLVSE 638
A T G P + A GL+V+ D +++ L++L+ +
Sbjct: 308 AGTSGGAPETVTPA--TGLVVEGSDVDKLSELLIELLDD 344
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 31/151 (20%)
Query: 492 KKNITTLLKAFGECRPLRELANLTLIMGNRDDIE--------EMSSGNASVLITVLKLID 543
+K + LLKA +E + I+ + D E E GN V+ +L
Sbjct: 49 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREF 108
Query: 544 KYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATK 603
+LYG V + I P+ EPFGL +EA G +A+
Sbjct: 109 VRELYGSVDF----------------------VIIPSYFEPFGLVALEAMCLGAIPIASA 146
Query: 604 NGGPVDIHRALNNGLLVDPHDQQAIADALLK 634
GG DI G+LV D +A+A+LK
Sbjct: 147 VGGLRDIITN-ETGILVKAGDPGELANAILK 176
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 575 VFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNG-LLVDPHDQQAIADALL 633
+ ++PA E G+ L+EA GLP++ T G N G ++ +P Q+ + + L
Sbjct: 273 LLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLR 332
Query: 634 KLVSEKNL---WVECRKNGWKNIHLFSWPEHCRTYLT 667
K +++ L W E ++ L+S PE +T
Sbjct: 333 KALTQSPLRMAWAENARHYADTQDLYSLPEKAADIIT 369
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 578 NPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNG-LLVDPHDQQAIADALLKLV 636
+PA E G+ L+EA GLP++ T G N G ++ +P Q+ + + L K +
Sbjct: 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL 335
Query: 637 SEKNL---WVECRKNGWKNIHLFSWPEHCRTYLT 667
++ L W E ++ L+S PE +T
Sbjct: 336 TQSPLRXAWAENARHYADTQDLYSLPEKAADIIT 369
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 473 RFLTNPHKPMILALSRPDPKKNITTLLKAFGECRPLRELANLTLI-MGNRDDIEEMSSGN 531
RF +P KP+I +SR DP K I +++ + + + L L+ + DD E G
Sbjct: 224 RFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVXAHDDPE----GW 279
Query: 532 ASVLITVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIE 591
T+ K+ + YD+ H + +V R + V + ++ E FGLT+ E
Sbjct: 280 IYFEKTLRKIGEDYDVKVLTNLIGVHAR-EVNAFQRAS----DVILQXSIREGFGLTVTE 334
Query: 592 AAAHGLPMVATKNGG 606
A G P++ GG
Sbjct: 335 AXWKGKPVIGRAVGG 349
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 473 RFLTNPHKPMILALSRPDPKKNITTLLKAFGECRPLRELANLTLI-MGNRDDIEEMSSGN 531
RF +P KP+I +SR DP K I +++ + + + L L+ + DD E G
Sbjct: 224 RFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPE----GW 279
Query: 532 ASVLITVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIE 591
T+ K+ + YD+ H + +V R + V + ++ E FGLT+ E
Sbjct: 280 IYFEKTLRKIGEDYDVKVLTNLIGVHAR-EVNAFQRAS----DVILQMSIREGFGLTVTE 334
Query: 592 AAAHGLPMVATKNGG 606
A G P++ GG
Sbjct: 335 AMWKGKPVIGRAVGG 349
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 29/182 (15%)
Query: 483 ILALSRPD-PKKNITTLLKAFGECRPLRELANLTLIMGNRDDIEEMSSGNASVLITVLKL 541
+L L R D P+K + LL A + + ++ +++ R D +E+ A L L+
Sbjct: 211 VLFLGRYDEPRKGMAVLLAALPKL--VARFPDVEILIVGRGDEDELRE-QAGDLAGHLRF 267
Query: 542 IDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALV-EPFGLTLIEAAAHGLPMV 600
+ + D + + A ++ V+ P L E FG+ L+EA A G +V
Sbjct: 268 LGQVDDATKAS----------------AMRSADVYCAPHLGGESFGIVLVEAMAAGTAVV 311
Query: 601 ATKNGGPVDIHRAL----NNGLLVDPHDQQAIADALLKLVSEKNLWVECRKNGWKNIHLF 656
A+ +D R + + G LV D +A AL+ ++ + L + +H +
Sbjct: 312 ASD----LDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRY 367
Query: 657 SW 658
W
Sbjct: 368 DW 369
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 564 EIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNGLLVDPH 623
E+ L ++ KG+ A E FGLT IEA A G P++A GG + G LV+
Sbjct: 90 ELIDLYSRCKGLLCT-AKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYLVNA- 147
Query: 624 DQQAIADALLKL 635
D I DA K+
Sbjct: 148 DVNEIIDAXKKV 159
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 473 RFLTNPHKPMILALSRPDPKKNITTLLKAFGECRPLRELANLTLI-MGNRDDIEEMSSGN 531
RF +P KP+I +SR DP K I +++ + + + L L+ + DD E G
Sbjct: 224 RFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPE----GW 279
Query: 532 ASVLITVLKLIDKYDLYGQVAYPKHHKQYDVPEIYRLAAKTKGVFINPALVEPFGLTLIE 591
T+ K+ + YD+ H + +V R + V + ++ FGLT+ E
Sbjct: 280 IYFEKTLRKIGEDYDVKVLTNLIGVHAR-EVNAFQRAS----DVILQMSIRAGFGLTVTE 334
Query: 592 AAAHGLPMVATKNGG 606
A G P++ GG
Sbjct: 335 AMWKGKPVIGRAVGG 349
>pdb|2NW0|A Chain A, Crystal Structure Of A Lysin
pdb|2NW0|B Chain B, Crystal Structure Of A Lysin
Length = 189
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 562 VPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDI 610
+ E+YRL AK G+++ E FG I+ +P K P D+
Sbjct: 106 IDELYRLGAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAYPCDL 154
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a
Trypsin
Length = 394
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 966 LASRSQALRYLFVRWRLNVANMFVILGESGDTDYEELISGAHKTL--IMKGVVEKGSEEL 1023
LA +S + LF + A + LG GDT ++E++ G + L I + + +G +EL
Sbjct: 41 LAHQSNSTNILFSPVSIAAAFAMLSLGAKGDT-HDEILEGLNFNLTEIPEAQIHEGFQEL 99
Query: 1024 LRTTNLRD 1031
LRT N D
Sbjct: 100 LRTLNQPD 107
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 966 LASRSQALRYLFVRWRLNVANMFVILGESGDTDYEELISGAHKTL--IMKGVVEKGSEEL 1023
LA +S + LF + A + LG GDT ++E++ G + L I + + +G +EL
Sbjct: 21 LAHQSNSTNILFSPVSIAAAFAMLSLGAKGDT-HDEILEGLNFNLTEIPEAQIHEGFQEL 79
Query: 1024 LRTTNLRD 1031
LRT N D
Sbjct: 80 LRTLNQPD 87
>pdb|3HMC|A Chain A, Endolysin From Bacillus Anthracis
Length = 192
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 562 VPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMV-ATKNGGPVDIHRALNNG 617
+ E+YRL AK G+++ + PFG+ +++ +P K P DI + G
Sbjct: 110 IDELYRLGAKKVGLYVGHHMYTPFGMANVKSDFVWIPRYGGNKPAYPCDIWQYTETG 166
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 966 LASRSQALRYLFVRWRLNVANMFVILGESGDTDYEELISGAHKTL--IMKGVVEKGSEEL 1023
LA +S + F + A + LG GDT ++E++ G + L I + + +G +EL
Sbjct: 41 LAHQSNSTNIFFSPVSIAAAFAMLSLGAKGDT-HDEILEGLNFNLTEIPEAQIHEGFQEL 99
Query: 1024 LRTTNLRD 1031
LRT N D
Sbjct: 100 LRTLNQPD 107
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 966 LASRSQALRYLFVRWRLNVANMFVILGESGDTDYEELISGAHKTL--IMKGVVEKGSEEL 1023
LA +S + LF + A + LG DT ++E++ G + L I + + +G +EL
Sbjct: 41 LAHQSNSTNILFSPVSIATAFAMLSLGTKADT-HDEILEGLNFNLTEIPEAQIHEGFQEL 99
Query: 1024 LRTTNLRD 1031
LRT N D
Sbjct: 100 LRTLNQPD 107
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 555 KHHKQ------YDVPEIYRLAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPV 608
+HH + Y+ P + + A + I P+ EP GLT + A +G V + GG
Sbjct: 343 RHHGRVGVAIGYNEPLSHLMQAGCDAIII-PSRFEPCGLTQLYALRYGCIPVVARTGGLA 401
Query: 609 DI-----HRALNN----GLLVDPHDQQAIADALLKLV---SEKNLWVECRKNGWKN 652
D H AL + G+ P + A+ + V + LW + +K G K+
Sbjct: 402 DTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKS 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,453,554
Number of Sequences: 62578
Number of extensions: 1386472
Number of successful extensions: 3280
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3243
Number of HSP's gapped (non-prelim): 45
length of query: 1067
length of database: 14,973,337
effective HSP length: 109
effective length of query: 958
effective length of database: 8,152,335
effective search space: 7809936930
effective search space used: 7809936930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)