Query 001494
Match_columns 1067
No_of_seqs 755 out of 7479
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 15:50:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001494.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_797-801//hhsearch_pdb/001494hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 752.7 43.1 707 2-725 12-755 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 607.5 34.9 610 68-683 95-738 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 547.2 41.4 572 73-690 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 538.6 45.6 596 78-712 9-626 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 491.6 38.0 525 71-691 22-566 (844)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 486.6 37.5 157 552-712 401-564 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 479.9 38.0 518 74-661 34-560 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 478.5 39.1 522 98-690 34-565 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 474.2 31.6 522 73-690 32-563 (606)
10 4eco_A Uncharacterized protein 1.0 1 1 473.8 27.3 394 2-446 30-470 (636)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=752.70 Aligned_cols=707 Identities=31% Similarity=0.432 Sum_probs=641.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCC---CCCCCCCCCCCCCEE
Q ss_conf 67999999986145699999889999899998578620159819999522665101355443---368757889975668
Q 001494 2 EEAHALLRWKTSLQNHNNGSPLSSWTFNNVTKIGSCAWVGIHCNHGGRVNSINLTSIGLKGT---LHDFSFSSFPHLAYL 78 (1067)
Q Consensus 2 ~~~~~ll~~k~~~~~~~~~~~l~sw~~~~~~~~~~c~w~gv~C~~~~~v~~l~l~~~~l~~~---l~~~~~~~l~~L~~L 78 (1067)
+|++|||+||+++.+ +. .++||+ .+.+||.|.||+|+ .|||++++|...++.|. +++ .+..+++|+.+
T Consensus 12 ~~~~all~~k~~~~~--~~-~l~~W~----~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~-~l~~L~~L~~l 82 (768)
T 3rgz_A 12 REIHQLISFKDVLPD--KN-LLPDWS----SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSS-SLLSLTGLESL 82 (768)
T ss_dssp HHHHHHHHHHTTCSC--TT-SSTTCC----TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHH-HTTTCTTCCEE
T ss_pred HHHHHHHHHHHHCCC--CC-CCCCCC----CCCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCCCH-HHHCCCCCCCC
T ss_conf 999999999966789--62-146878----99987688413878-99278987789986775576696-57316802246
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 5359823357897643347664530688734588996--53232334342023422226788766-66443332001125
Q 001494 79 DLWSNQLFGNIPPQIGNISKLKYLDLSSNLFSGAIPP--QIGHLSYLKTLHLFKNQLSGSIPLEV-GGLSSLNNLALYSN 155 (1067)
Q Consensus 79 ~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~n 155 (1067)
+++.+.+.. +|..|+.+++|++|+|++|.+++.+|. .++.+++|++|+|++|.+.+..|..+ .++++|++|++++|
T Consensus 83 ~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 83 FLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp ECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred CCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 786888678-7033245788998989898578707896787278899989896882677479778563889998989798
Q ss_pred CCCCCCCCC---CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 345656877---56888653999763587685577656623244010214543465588877643355231256767799
Q 001494 156 YLEDIIPHS---LGNLTNLVTLCLYNNLLSGSIPSEIGNLKYLLDLNLYNNELNGSIPQSLGNLSNLAMLNLSSNSLFGS 232 (1067)
Q Consensus 156 ~~~~~~p~~---~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 232 (1067)
.+.+..|.. +.++++|++|++++|.+++..+. ..+++|++|++++|.+.+.+|. ++.+++|+.|++++|.+++.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred CCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCC
T ss_conf 35885871556643589889898978803465784--5478689898928827887711-12699999897948858781
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 78546776447815720764665458643475541568870642532488755467-86557994123345876664467
Q 001494 233 IPSELGNLKYLSDLKLADNKLNGSIPHSLCNLTNLVILYIYNNSLSGLIPSEIGNL-KFLSKIALSYNKFSGLIPHSLGN 311 (1067)
Q Consensus 233 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~l~~ 311 (1067)
+|..+..+++|+.|++++|.+.+.+|.. .+++|+.|++++|.+++.+|..+... ++|+.|++++|.+.+..|..|++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 6577744888898989888665716724--36878989791785577258888844686889989689677842367755
Q ss_pred CCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCC
Q ss_conf 764317863687776778721-23689888698008502334883432878-9993883388676556734579--9999
Q 001494 312 LSNIAFLFLDSNSLFGLIPSE-LRNLKSLSILELGNNKLCGSIPHFLGNLT-NLSVLFIYNNSLSGSIPCEIGN--LKSL 387 (1067)
Q Consensus 312 l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~--l~~L 387 (1067)
+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..|..+..+. +|++|++++|.+.+.++..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCC
T ss_conf 87766778978852573797887248888788484784376230989863227719986278747876766653324776
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCC
Q ss_conf 979764786645699740002477679802683765696211076888589689984667789-9878775518850586
Q 001494 388 SYLNLAFNKLTSSIPISLSNLTNLSVLSFYKNSLSGAIPKEYRNLVKLTKLFLGDNQFQGPIP-NLKNLTSLVRVHLDRN 466 (1067)
Q Consensus 388 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~l~~~~~L~~L~l~~n 466 (1067)
++|++++|.+++.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCC
T ss_conf 18989778465424877756898798989588466854677744998898989788154718978828777329990199
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 33446542123678601997246434587888878889741674368723898898655788774997689712476730
Q 001494 467 YLTSNISESFYIYPNLTFIDLSYNNLYGEISSDWGRCPKLGALDFSKNNITGNIPPKIGYSSQLEVLDLSSNHVVGDIPA 546 (1067)
Q Consensus 467 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 546 (1067)
.++......+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf 51375887881699899897539951896876885689999898978943374887770889899898988846882795
Q ss_pred CCCCCCCCCEEECCCC----------------------CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 0057874453340446----------------------045785311133443408991289889986311244122440
Q 001494 547 ELGKLSFLIKLILAQN----------------------QLSGQLSPKLGLLVQLEHLDLSSNNLSNAIPESLGNLVKLHY 604 (1067)
Q Consensus 547 ~~~~~~~L~~L~l~~N----------------------~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 604 (1067)
.+.....+..+.+..+ .+.+..+..+..+..+..++++.|.+.+..+..|..++.|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCE
T ss_conf 78604212232013454211113444322223322210013556323200232110011331004627433403356657
Q ss_pred ECCCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 01357533444112211001236111456547886245431144564001246513565551123574221998125757
Q 001494 605 LNLSNNQFSWEIPIKLEELIHLSELDLSYNFLGRAIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEMHALQCIDISYNEL 684 (1067)
Q Consensus 605 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~l~~N~l 684 (1067)
|+|++|++++..|..+..++.|+.|+|++|++++..|..+..+++|+.|+|++|++++.+|..+..++.|+.+|+++|++
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
T ss_conf 97858801555877884141578784868803887896784777899898978802386886775788789787968815
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89899997645787420259988668888999732224675
Q 001494 685 RGPIPNSTAFRDAPIKALQGNKGLCGDFKGLPSCKALKSNK 725 (1067)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~p~c~~~~~~~ 725 (1067)
++.+|...+|..++..++.|||+.|+.+ +++|.......
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~--l~~C~~~~~~~ 755 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYP--LPRCDPSNADG 755 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTT--SCCCCSCC---
T ss_pred CCCCCCCHHHCCCCHHHHCCCCHHCCCC--CCCCCCCCCCC
T ss_conf 5608996010248977756983210887--76788876688
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=607.51 Aligned_cols=610 Identities=32% Similarity=0.451 Sum_probs=415.1
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCC---C
Q ss_conf 578899756685359823357897--64334766453068873458899653-23233434202342222678876---6
Q 001494 68 SFSSFPHLAYLDLWSNQLFGNIPP--QIGNISKLKYLDLSSNLFSGAIPPQI-GHLSYLKTLHLFKNQLSGSIPLE---V 141 (1067)
Q Consensus 68 ~~~~l~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~---~ 141 (1067)
.|..+++|++|+|++|.+.+.+|. .++.+++|++|+|++|.+.+..|..+ ..+++|++|++++|.+++..|.. +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred HHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHH
T ss_conf 32457889989898985787078967872788999898968826774797785638899989897983588587155664
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 66443332001125345656877568886539997635876855776566232440102145434655888776433552
Q 001494 142 GGLSSLNNLALYSNYLEDIIPHSLGNLTNLVTLCLYNNLLSGSIPSEIGNLKYLLDLNLYNNELNGSIPQSLGNLSNLAM 221 (1067)
Q Consensus 142 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 221 (1067)
.++++|++|++++|.+.+..| +..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+..+++|+.
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred CCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
T ss_conf 358988989897880346578--45478689898928827887711-126999998979488587816577744888898
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 3125676779978546776447815720764665458643475-541568870642532488755467865579941233
Q 001494 222 LNLSSNSLFGSIPSELGNLKYLSDLKLADNKLNGSIPHSLCNL-TNLVILYIYNNSLSGLIPSEIGNLKFLSKIALSYNK 300 (1067)
Q Consensus 222 L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 300 (1067)
|++++|.+.+.+|.. .+++|+.|++++|.+.+.+|..+... ++|+.|++++|.+++..|..|..+++|+.|++++|.
T Consensus 252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 989888665716724--368789897917855772588888446868899896896778423677558776677897885
Q ss_pred CCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCC
Q ss_conf 45876664-46776431786368777677872123689-8886980085023348834328--78999388338867655
Q 001494 301 FSGLIPHS-LGNLSNIAFLFLDSNSLFGLIPSELRNLK-SLSILELGNNKLCGSIPHFLGN--LTNLSVLFIYNNSLSGS 376 (1067)
Q Consensus 301 l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~ 376 (1067)
+.+.+|.. +..+++|++|++++|++.+..|..+..++ +|+.|++++|.+++..+..+.. +++|++|++++|.+.+.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 25737978872488887884847843762309898632277199862787478767666533247761898977846542
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCC
Q ss_conf 67345799999979764786645699740002477679802683765696211076888589689984667789-98787
Q 001494 377 IPCEIGNLKSLSYLNLAFNKLTSSIPISLSNLTNLSVLSFYKNSLSGAIPKEYRNLVKLTKLFLGDNQFQGPIP-NLKNL 455 (1067)
Q Consensus 377 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~l~~~ 455 (1067)
+|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+ .+..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCC
T ss_conf 48777568987989895884668546777449988989897881547189788287773299901995137588788169
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 75518850586334465421236786019972464345878888788897416743687238988986557887749976
Q 001494 456 TSLVRVHLDRNYLTSNISESFYIYPNLTFIDLSYNNLYGEISSDWGRCPKLGALDFSKNNITGNIPPKIGYSSQLEVLDL 535 (1067)
Q Consensus 456 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 535 (1067)
++|+.|++++|.++......+..+++|+.|++++|.+.+..+..+..++.|+.|++++|.+.+..|..+.....+..+++
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHC
T ss_conf 98998975399518968768856899998989789433748877708898998989888468827957860421223201
Q ss_pred CCC----------------------CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 897----------------------1247673000578744533404460457853111334434089912898899863
Q 001494 536 SSN----------------------HVVGDIPAELGKLSFLIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNNLSNAIP 593 (1067)
Q Consensus 536 ~~N----------------------~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 593 (1067)
..+ .+.+..+..+..+..+..+++..|.+++..+..+..++.|+.|||++|++++..|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 34542111134443222233222100135563232002321100113310046274334033566579785880155587
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11244122440013575334441122110012361114565478862454311445640012465135655511235742
Q 001494 594 ESLGNLVKLHYLNLSNNQFSWEIPIKLEELIHLSELDLSYNFLGRAIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEMHA 673 (1067)
Q Consensus 594 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~ 673 (1067)
..++.++.|+.|+|++|.+++..|..+..++.|+.|||++|++++..|..+..++.|+.|++++|++++.+|.. ..+..
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~ 728 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFET 728 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGG
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCC
T ss_conf 78841415787848688038878967847778998989788023868867757887897879688155608996-01024
Q ss_pred CCEEECCCCC
Q ss_conf 2199812575
Q 001494 674 LQCIDISYNE 683 (1067)
Q Consensus 674 L~~l~l~~N~ 683 (1067)
+....+.+|+
T Consensus 729 ~~~~~~~gN~ 738 (768)
T 3rgz_A 729 FPPAKFLNNP 738 (768)
T ss_dssp SCGGGGCSCT
T ss_pred CCHHHHCCCC
T ss_conf 8977756983
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=547.19 Aligned_cols=572 Identities=26% Similarity=0.271 Sum_probs=319.5
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97566853598233578976433476645306887345889965323233434202342222678876666443332001
Q 001494 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNLFSGAIPPQIGHLSYLKTLHLFKNQLSGSIPLEVGGLSSLNNLAL 152 (1067)
Q Consensus 73 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 152 (1067)
+.+++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88768889899778759788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCCEEECCCCCCC
Q ss_conf 12534565687756888653999763587685577656623244010214543465588877--6433552312567677
Q 001494 153 YSNYLEDIIPHSLGNLTNLVTLCLYNNLLSGSIPSEIGNLKYLLDLNLYNNELNGSIPQSLG--NLSNLAMLNLSSNSLF 230 (1067)
Q Consensus 153 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~ls~n~l~ 230 (1067)
++|.+.++.|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 89966853966741567888898989952466721112455677797458843652978862446663217988898256
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---CCCCEEEEEEECCCCCCCCCCCCCCCCC--CCEEEECCCCCCCCC
Q ss_conf 99785467764478157207646654586434---7554156887064253248875546786--557994123345876
Q 001494 231 GSIPSELGNLKYLSDLKLADNKLNGSIPHSLC---NLTNLVILYIYNNSLSGLIPSEIGNLKF--LSKIALSYNKFSGLI 305 (1067)
Q Consensus 231 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~Ls~n~l~~~~ 305 (1067)
+..|..+..+++|+.++++++.+.......+. ..++|+.|++++|.+++..|..|..+.. |+.|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 55815553223445543056646805677787775315100887457743646866751467677888778788767568
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---------CCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 66446776431786368777677872123689888698008502334---------883432878999388338867655
Q 001494 306 PHSLGNLSNIAFLFLDSNSLFGLIPSELRNLKSLSILELGNNKLCGS---------IPHFLGNLTNLSVLFIYNNSLSGS 376 (1067)
Q Consensus 306 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------~~~~l~~l~~L~~L~l~~n~l~~~ 376 (1067)
+..|..+++|++|++++|++.+..+..|..+++|+.|++++|...+. ....|..+++|++|++++|.+.+.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 02116741056855778856765865626788855773633132133333554543865624677788887989826878
Q ss_pred CCCCCCCCCCCCEEECCCCCCCC--CCCCCCCCC--CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 67345799999979764786645--699740002--47767980268376569621107688858968998466778998
Q 001494 377 IPCEIGNLKSLSYLNLAFNKLTS--SIPISLSNL--TNLSVLSFYKNSLSGAIPKEYRNLVKLTKLFLGDNQFQGPIPNL 452 (1067)
Q Consensus 377 ~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l 452 (1067)
.+..+..+++|++|++++|.+.. .....|..+ ++|+.|++++|++.+..+..|..+++|+.|++++|.+.+.
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---- 420 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE---- 420 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE----
T ss_pred CHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCC----
T ss_conf 8557406568728988798014432353220245568676688999977767754420778888886778757543----
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 78775518850586334465421236786019972464345878888788897416743687238988986557887749
Q 001494 453 KNLTSLVRVHLDRNYLTSNISESFYIYPNLTFIDLSYNNLYGEISSDWGRCPKLGALDFSKNNITGNIPPKIGYSSQLEV 532 (1067)
Q Consensus 453 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 532 (1067)
++.. .|..++.|+.|++++|.+....+..|..+++|+.
T Consensus 421 ------------------~~~~------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 421 ------------------LTGQ------------------------EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp ------------------CCSG------------------------GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred ------------------CCCC------------------------CCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCC
T ss_conf ------------------5755------------------------3257546127844899754227645500754310
Q ss_pred EECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--------CCCCCCCCCC
Q ss_conf 976897124--767300057874453340446045785311133443408991289889986--------3112441224
Q 001494 533 LDLSSNHVV--GDIPAELGKLSFLIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNNLSNAI--------PESLGNLVKL 602 (1067)
Q Consensus 533 L~L~~N~l~--~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~--------~~~l~~l~~L 602 (1067)
|++++|.+. +..+..+..+++|+.|++++|+++.+.+..|..+++|+.|++++|.++... ...|..+++|
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCC
T ss_conf 11014644225667764555787899989999877679446345534688858899730000000467741423379988
Q ss_pred CEECCCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEECCC
Q ss_conf 4001357533444112211001236111456547886245431144564001246513565551123-574221998125
Q 001494 603 HYLNLSNNQFSWEIPIKLEELIHLSELDLSYNFLGRAIPSQICIMQSLEKLNLSHNSLSGVIPRCFE-EMHALQCIDISY 681 (1067)
Q Consensus 603 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~-~l~~L~~l~l~~ 681 (1067)
+.|+|++|+++.+.+..|.++++|+.|++++|+|+.+.+..+..+++|+.|++++|++++..+..+. .+++|+.+++++
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCC
T ss_conf 88889999788779777346667522389999777679768378988888989999687059668301146657798318
Q ss_pred CCCCCCCCC
Q ss_conf 757898999
Q 001494 682 NELRGPIPN 690 (1067)
Q Consensus 682 N~l~~~~~~ 690 (1067)
|++.|.++.
T Consensus 619 N~~~c~c~~ 627 (680)
T 1ziw_A 619 NPFDCTCES 627 (680)
T ss_dssp CCCCBCCCC
T ss_pred CCCCCCCCC
T ss_conf 970257766
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=538.59 Aligned_cols=596 Identities=22% Similarity=0.215 Sum_probs=443.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 85359823357897643347664530688734588996532323343420234222267887666644333200112534
Q 001494 78 LDLWSNQLFGNIPPQIGNISKLKYLDLSSNLFSGAIPPQIGHLSYLKTLHLFKNQLSGSIPLEVGGLSSLNNLALYSNYL 157 (1067)
Q Consensus 78 L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 157 (1067)
++.+++++. .+|..+. +.+++|+|++|.+++..+..|.++++|++|++++|.+++..|..++++++|++|++++|.+
T Consensus 9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred EECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 487779805-2641248--8876888989977875978871787675887889964856977874066768888999856
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 56568775688865399976358768557765662324401021454346558887764335523125676779978546
Q 001494 158 EDIIPHSLGNLTNLVTLCLYNNLLSGSIPSEIGNLKYLLDLNLYNNELNGSIPQSLGNLSNLAMLNLSSNSLFGSIPSEL 237 (1067)
Q Consensus 158 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~~ 237 (1067)
..+.+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 75685453038888989898996685396674156788889898995246672111245567779745884365297886
Q ss_pred C--CCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC---CCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 7--764478157207646654586434755415688706425324887554---67865579941233458766644677
Q 001494 238 G--NLKYLSDLKLADNKLNGSIPHSLCNLTNLVILYIYNNSLSGLIPSEIG---NLKFLSKIALSYNKFSGLIPHSLGNL 312 (1067)
Q Consensus 238 ~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~~~~~~l~~l 312 (1067)
. .+++|+.|++++|.+.+..|..+..+.+|+.|+++++.+.......+. ..++|+.|++++|.+.+..+.+|.++
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCC
T ss_conf 24466632179888982565581555322344554305664680567778777531510088745774364686675146
Q ss_pred CC--CCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 64--3178636877767787212368988869800850233488343287899938833886765567345799999979
Q 001494 313 SN--IAFLFLDSNSLFGLIPSELRNLKSLSILELGNNKLCGSIPHFLGNLTNLSVLFIYNNSLSGSIPCEIGNLKSLSYL 390 (1067)
Q Consensus 313 ~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 390 (1067)
+. |+.|++++|++.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|++++|...+.++
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~------------ 313 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS------------ 313 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---------------
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCC------------
T ss_conf 76778887787887675680211674105685577885676586562678885577363313213333------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 76478664569974000247767980268376569621107688858968998466778998787755188505863344
Q 001494 391 NLAFNKLTSSIPISLSNLTNLSVLSFYKNSLSGAIPKEYRNLVKLTKLFLGDNQFQGPIPNLKNLTSLVRVHLDRNYLTS 470 (1067)
Q Consensus 391 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~ 470 (1067)
.+.+.......|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.. ..
T Consensus 314 ---~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~---------------------~~ 369 (680)
T 1ziw_A 314 ---LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL---------------------RT 369 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC---------------------CE
T ss_pred ---CCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHH---------------------HH
T ss_conf ---355454386562467778888798982687885574065687289887980144---------------------32
Q ss_pred CCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 65421236--7860199724643458788887888974167436872389889-86557887749976897124767300
Q 001494 471 NISESFYI--YPNLTFIDLSYNNLYGEISSDWGRCPKLGALDFSKNNITGNIP-PKIGYSSQLEVLDLSSNHVVGDIPAE 547 (1067)
Q Consensus 471 ~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~ 547 (1067)
+....|.. .+.|+.+++++|.+.+..+..|..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++....+..
T Consensus 370 l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 449 (680)
T 1ziw_A 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449 (680)
T ss_dssp ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT
T ss_pred CCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHH
T ss_conf 35322024556867668899997776775442077888888677875754357553257546127844899754227645
Q ss_pred CCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCH-------
Q ss_conf 057874453340446045--78531113344340899128988998631124412244001357533444112-------
Q 001494 548 LGKLSFLIKLILAQNQLS--GQLSPKLGLLVQLEHLDLSSNNLSNAIPESLGNLVKLHYLNLSNNQFSWEIPI------- 618 (1067)
Q Consensus 548 ~~~~~~L~~L~l~~N~l~--~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~------- 618 (1067)
|..++.|+.|++++|.++ +..+..+..+++|+.|++++|.++...+..|..+++|++|++++|.++.....
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred HHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCC
T ss_conf 50075431011014644225667764555787899989999877679446345534688858899730000000467741
Q ss_pred -HHHHCCCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-C-CCC
Q ss_conf -2110012361114565478862454311445640012465135655511235742219981257578989999-7-645
Q 001494 619 -KLEELIHLSELDLSYNFLGRAIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEMHALQCIDISYNELRGPIPNS-T-AFR 695 (1067)
Q Consensus 619 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~-~-~~~ 695 (1067)
.|.++++|++|++++|+++.+.+..|..+++|+.|++++|+++.+.+..|..+++|+.+++++|++++..+.. . .++
T Consensus 530 ~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 609 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHT
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 42337998888889999788779777346667522389999777679768378988888989999687059668301146
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 78742025998866888
Q 001494 696 DAPIKALQGNKGLCGDF 712 (1067)
Q Consensus 696 ~~~~~~~~~n~~~c~~~ 712 (1067)
.+....+.+|||.|+|.
T Consensus 610 ~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 610 NLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCSEEECTTCCCCBCCC
T ss_pred CCCEEECCCCCCCCCCC
T ss_conf 65779831897025776
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=491.62 Aligned_cols=525 Identities=22% Similarity=0.210 Sum_probs=291.2
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8997566853598233578976433476645306887345889-965323233434202342222678876666443332
Q 001494 71 SFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNLFSGAI-PPQIGHLSYLKTLHLFKNQLSGSIPLEVGGLSSLNN 149 (1067)
Q Consensus 71 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 149 (1067)
..+++++|+|++|.+.+..|..|.++++|++|+|++|...+.+ |..|+++++|++|+|++|.+++..|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCEECCCCCCCCCCCCCCCCCC--CCCCEEEC
Q ss_conf 001125345656877--5688865399976358768557-765662324401021454346558887764--33552312
Q 001494 150 LALYSNYLEDIIPHS--LGNLTNLVTLCLYNNLLSGSIP-SEIGNLKYLLDLNLYNNELNGSIPQSLGNL--SNLAMLNL 224 (1067)
Q Consensus 150 L~l~~n~~~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l 224 (1067)
|++++|.+.+..|.. |.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred CCCCCCCCCCCCCCCCCC------CCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 567677997854677644------78157207646654586434755415688706425324887554678655799412
Q 001494 225 SSNSLFGSIPSELGNLKY------LSDLKLADNKLNGSIPHSLCNLTNLVILYIYNNSLSGLIPSEIGNLKFLSKIALSY 298 (1067)
Q Consensus 225 s~n~l~~~~~~~~~~l~~------L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 298 (1067)
+.|.+.+..|..+..+++ |+.|++++|.+.+..+..+.... ....++.+.++.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l---------------------~~~~l~~L~l~~ 240 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI---------------------SKSQAFSLILAH 240 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---------------------CSCCBSEEECCS
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHC---------------------CCCCCCCEECCC
T ss_conf 78866655455332237722357400796578868656778887642---------------------744100112121
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 33458766644677643178636877767787212368--9888698008502334883432878999388338867655
Q 001494 299 NKFSGLIPHSLGNLSNIAFLFLDSNSLFGLIPSELRNL--KSLSILELGNNKLCGSIPHFLGNLTNLSVLFIYNNSLSGS 376 (1067)
Q Consensus 299 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 376 (1067)
+..... +..+.+.......|.++ ++++.|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus 241 ~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 241 HIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp SCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred CCCCCC---------------CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 223466---------------44456688985565255547861898979945515863452589999998979818987
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 67345799999979764786645699740002477679802683765696211076888589689984667789987877
Q 001494 377 IPCEIGNLKSLSYLNLAFNKLTSSIPISLSNLTNLSVLSFYKNSLSGAIPKEYRNLVKLTKLFLGDNQFQGPIPNLKNLT 456 (1067)
Q Consensus 377 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~~~ 456 (1067)
.+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.++... .
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~-- 379 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----F-- 379 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----S--
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC----C--
T ss_conf 9688368889998989899788518788468999998989899877628666137888999889899778616----8--
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 55188505863344654212367860199724643458788887888974167436872389889865578877499768
Q 001494 457 SLVRVHLDRNYLTSNISESFYIYPNLTFIDLSYNNLYGEISSDWGRCPKLGALDFSKNNITGNIPPKIGYSSQLEVLDLS 536 (1067)
Q Consensus 457 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~ 536 (1067)
+++|+.+++++|.+..... ....++.|++++|.+.....
T Consensus 380 ----------------------~~~L~~L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~~--------------- 418 (844)
T 3j0a_A 380 ----------------------IPSIPDIFLSGNKLVTLPK----INLTANLIHLSENRLENLDI--------------- 418 (844)
T ss_dssp ----------------------CCSCSEEEEESCCCCCCCC----CCTTCCEEECCSCCCCSSTT---------------
T ss_pred ----------------------CCCCCHHCCCCCCCCCCCC----CCCCCCEEECCCCCCCCCCH---------------
T ss_conf ----------------------8982320058997231455----45543122145675345755---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC-----CCCCCCCCCCCCCCEECCCCC
Q ss_conf 9712476730005787445334044604578531-1133443408991289889-----986311244122440013575
Q 001494 537 SNHVVGDIPAELGKLSFLIKLILAQNQLSGQLSP-KLGLLVQLEHLDLSSNNLS-----NAIPESLGNLVKLHYLNLSNN 610 (1067)
Q Consensus 537 ~N~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~~~~L~~L~Ls~N~l~-----~~~~~~l~~l~~L~~L~L~~N 610 (1067)
...+..+++|+.|++++|++++.... .+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|
T Consensus 419 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 419 --------LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp --------HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred --------HHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf --------666512776666667787125555433356687310024777736441013553555447553657778898
Q ss_pred CCCCCCCHHHHHCCCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 33444112211001236111456547886245431144564001246513565551123574221998125757898999
Q 001494 611 QFSWEIPIKLEELIHLSELDLSYNFLGRAIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEMHALQCIDISYNELRGPIPN 690 (1067)
Q Consensus 611 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~ 690 (1067)
.+++..+..|.++++|+.|+|++|+|+.+.+..+. ++|+.|+|++|++++..+..+. +|+.+++++|++.|.++.
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred CCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCC
T ss_conf 56553955704501221569999978745710110--0455888988847888966837---768899319970253661
Q ss_pred C
Q ss_conf 9
Q 001494 691 S 691 (1067)
Q Consensus 691 ~ 691 (1067)
.
T Consensus 566 ~ 566 (844)
T 3j0a_A 566 S 566 (844)
T ss_dssp C
T ss_pred H
T ss_conf 8
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=486.61 Aligned_cols=157 Identities=25% Similarity=0.227 Sum_probs=85.6
Q ss_pred CCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEECCCCCCCC-----CCCCHHHHHCC
Q ss_conf 744533404460457853-1113344340899128988998631-1244122440013575334-----44112211001
Q 001494 552 SFLIKLILAQNQLSGQLS-PKLGLLVQLEHLDLSSNNLSNAIPE-SLGNLVKLHYLNLSNNQFS-----WEIPIKLEELI 624 (1067)
Q Consensus 552 ~~L~~L~l~~N~l~~~~~-~~~~~~~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~ 624 (1067)
..++.|++++|+++.... ..+..+++|+.|+|++|.+++..+. .+..+++|+.|+|++|.++ +..+..|.+++
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~ 480 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred CCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 54312214567534575566651277666666778712555543335668731002477773644101355355544755
Q ss_pred CCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23611145654788624543114456400124651356555112357422199812575789899997645787420259
Q 001494 625 HLSELDLSYNFLGRAIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEMHALQCIDISYNELRGPIPNSTAFRDAPIKALQG 704 (1067)
Q Consensus 625 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 704 (1067)
+|+.|+|++|.|++..+..+..+++|+.|+|++|+++++.+..+. ++|+.|++++|++++..|.. +..+....+.+
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~ 556 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITH 556 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEE
T ss_pred CCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCCCCEEEECC
T ss_conf 365777889856553955704501221569999978745710110--04558889888478889668--37768899319
Q ss_pred CCCCCCCC
Q ss_conf 98866888
Q 001494 705 NKGLCGDF 712 (1067)
Q Consensus 705 n~~~c~~~ 712 (1067)
|||.|+|.
T Consensus 557 Np~~C~c~ 564 (844)
T 3j0a_A 557 NKFICECE 564 (844)
T ss_dssp ECCCCSSS
T ss_pred CCCCCCCC
T ss_conf 97025366
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=479.90 Aligned_cols=518 Identities=21% Similarity=0.205 Sum_probs=228.4
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75668535982335789764334766453068873458899653232334342023422226788766664433320011
Q 001494 74 HLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNLFSGAIPPQIGHLSYLKTLHLFKNQLSGSIPLEVGGLSSLNNLALY 153 (1067)
Q Consensus 74 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (1067)
.+++|+|++|.+.+..|..|+++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 25345656877568886539997635876855776566232440102145434655888776433552312567677997
Q 001494 154 SNYLEDIIPHSLGNLTNLVTLCLYNNLLSGSIPSEIGNLKYLLDLNLYNNELNGSIPQSLGNLSNLAMLNLSSNSLFGSI 233 (1067)
Q Consensus 154 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 233 (1067)
+|.+.++.+ ..|.++++|++|++++|.+++.....+..+++|+.|++++|.+.+..
T Consensus 114 ~n~i~~l~~------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 114 QTGISSIDF------------------------IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp TSCCSCGGG------------------------SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CCCCCCCCC------------------------CHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 267665781------------------------01223782238988798341147654568765687776568445549
Q ss_pred CCCCCCCCCCC--CEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 85467764478--1572076466545864347554156887064253248875546786557994123345876664467
Q 001494 234 PSELGNLKYLS--DLKLADNKLNGSIPHSLCNLTNLVILYIYNNSLSGLIPSEIGNLKFLSKIALSYNKFSGLIPHSLGN 311 (1067)
Q Consensus 234 ~~~~~~l~~L~--~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 311 (1067)
+..+..+++|+ .|++++|.+.+..|..+.. .+|+.|++++|.. .+..+..+..+....+..+.+...
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~------- 238 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDM------- 238 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTS-------
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHH---HHHHHHHCCCCCHHHEECHHHCCC-------
T ss_conf 65633221564038966798147548667300-1001355677266---777765133564422002011026-------
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 76431786368777677872123689--8886980085023348834328789993883388676556734579999997
Q 001494 312 LSNIAFLFLDSNSLFGLIPSELRNLK--SLSILELGNNKLCGSIPHFLGNLTNLSVLFIYNNSLSGSIPCEIGNLKSLSY 389 (1067)
Q Consensus 312 l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 389 (1067)
. ...+.+..|..+. +++.|++++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++
T Consensus 239 ----~--------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~ 305 (606)
T 3t6q_A 239 ----D--------DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKK 305 (606)
T ss_dssp ----C--------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCE
T ss_pred ----C--------CCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCE
T ss_conf ----4--------1226866743032075059994457658557777445667888956288267-77821416546888
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 976478664569974000247767980268376569-6211076888589689984667789987877551885058633
Q 001494 390 LNLAFNKLTSSIPISLSNLTNLSVLSFYKNSLSGAI-PKEYRNLVKLTKLFLGDNQFQGPIPNLKNLTSLVRVHLDRNYL 468 (1067)
Q Consensus 390 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~l~~~~~L~~L~l~~n~l 468 (1067)
|++++|++.+..+..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+...
T Consensus 306 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------ 367 (606)
T 3t6q_A 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC------------------ 367 (606)
T ss_dssp EECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE------------------
T ss_pred EECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC------------------
T ss_conf 97716876867602330157689888989974443462455066758988788996664567------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 446542123678601997246434587888878889741674368723898898-6557887749976897124767300
Q 001494 469 TSNISESFYIYPNLTFIDLSYNNLYGEISSDWGRCPKLGALDFSKNNITGNIPP-KIGYSSQLEVLDLSSNHVVGDIPAE 547 (1067)
Q Consensus 469 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~ 547 (1067)
....+..+++|+.|++++|.+.+..+..|..++.|+.|++++|.+....+. .+..+++|+.|++++|.+.+..+..
T Consensus 368 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 368 ---CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp ---STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred ---CCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHH
T ss_conf ---52210567888989898996775788873477457768788886777565212417655888989898557768778
Q ss_pred CCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCC
Q ss_conf 05787445334044604578---531113344340899128988998631124412244001357533444112211001
Q 001494 548 LGKLSFLIKLILAQNQLSGQ---LSPKLGLLVQLEHLDLSSNNLSNAIPESLGNLVKLHYLNLSNNQFSWEIPIKLEELI 624 (1067)
Q Consensus 548 ~~~~~~L~~L~l~~N~l~~~---~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 624 (1067)
+..+++|+.|++++|++++. ....+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..++
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 73788788898989988854345431240488766887999966706864632656788898989806868966847566
Q ss_pred CCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 2361114565478862454311445640012465135
Q 001494 625 HLSELDLSYNFLGRAIPSQICIMQSLEKLNLSHNSLS 661 (1067)
Q Consensus 625 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~ 661 (1067)
.| .|++++|++++..+..+..+++|+.|++++|++.
T Consensus 525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 51-8987689414268766256778788967799861
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=478.54 Aligned_cols=522 Identities=20% Similarity=0.191 Sum_probs=401.8
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 66453068873458899653232334342023422226788766664433320011253456568775688865399976
Q 001494 98 KLKYLDLSSNLFSGAIPPQIGHLSYLKTLHLFKNQLSGSIPLEVGGLSSLNNLALYSNYLEDIIPHSLGNLTNLVTLCLY 177 (1067)
Q Consensus 98 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 177 (1067)
.+++|+|++|.+++..|..|.++++|++|+|++|.++ ++.|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------------------~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------------------------WIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------------------------EECTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCC------------------------EECHHHCCCCCCCCEEECC
T ss_conf 6758981587347179667256766528978898355------------------------2485113684336764488
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 35876855776566232440102145434655888776433552312567677997854677644781572076466545
Q 001494 178 NNLLSGSIPSEIGNLKYLLDLNLYNNELNGSIPQSLGNLSNLAMLNLSSNSLFGSIPSELGNLKYLSDLKLADNKLNGSI 257 (1067)
Q Consensus 178 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 257 (1067)
+|.+++..|..|+++++|++|++++|.+++..+..+..+++|+.|++++|.+.+.....+..+++|+.|++++|.+.+..
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 98565458655234421537652126766578101223782238988798341147654568765687776568445549
Q ss_pred CCCCCCCCCEE--EEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 86434755415--6887064253248875546786557994123345876664467764317863687776778721236
Q 001494 258 PHSLCNLTNLV--ILYIYNNSLSGLIPSEIGNLKFLSKIALSYNKFSGLIPHSLGNLSNIAFLFLDSNSLFGLIPSELRN 335 (1067)
Q Consensus 258 p~~~~~l~~L~--~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 335 (1067)
|..+..+++|+ .|++++|.+++..|..|.. ..|+.|++++|. ..+..+.++.++....+.-..+
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~---------- 235 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTF---------- 235 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCC----------
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHH----------
T ss_conf 65633221564038966798147548667300-100135567726---6777765133564422002011----------
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 89888698008502334883432878--9993883388676556734579999997976478664569974000247767
Q 001494 336 LKSLSILELGNNKLCGSIPHFLGNLT--NLSVLFIYNNSLSGSIPCEIGNLKSLSYLNLAFNKLTSSIPISLSNLTNLSV 413 (1067)
Q Consensus 336 l~~L~~L~L~~N~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 413 (1067)
..+....++ +..+.++. +|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.
T Consensus 236 -~~~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~ 305 (606)
T 3t6q_A 236 -EDMDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKK 305 (606)
T ss_dssp -TTSCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCE
T ss_pred -CCCCCCCCC--------HHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCE
T ss_conf -026412268--------66743032075059994457658557777445667888956288267-77821416546888
Q ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 98026837656962110768885896899846677899878775518850586334465421236786019972464345
Q 001494 414 LSFYKNSLSGAIPKEYRNLVKLTKLFLGDNQFQGPIPNLKNLTSLVRVHLDRNYLTSNISESFYIYPNLTFIDLSYNNLY 493 (1067)
Q Consensus 414 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 493 (1067)
|++++|.+.+..+..+..+++|++|++++|.+.+.. +...+..+++|+.|++++|.+.
T Consensus 306 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~----------------------~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL----------------------GTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp EECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC----------------------CSSTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC----------------------CHHHHHCCCCCCEEECCCCCCC
T ss_conf 977168768676023301576898889899744434----------------------6245506675898878899666
Q ss_pred CCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 878--88878889741674368723898898655788774997689712476730-005787445334044604578531
Q 001494 494 GEI--SSDWGRCPKLGALDFSKNNITGNIPPKIGYSSQLEVLDLSSNHVVGDIPA-ELGKLSFLIKLILAQNQLSGQLSP 570 (1067)
Q Consensus 494 ~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~L~~L~l~~N~l~~~~~~ 570 (1067)
+.. +..+..++.|+.|++++|.+....+..+..+++|+.|++++|++.+..+. .+..+++|+.|++++|.+....+.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred CCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHH
T ss_conf 45675221056788898989899677578887347745776878888677756521241765588898989855776877
Q ss_pred CCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCCCHHHHHCC
Q ss_conf 113344340899128988998---63112441224400135753344411221100123611145654788624543114
Q 001494 571 KLGLLVQLEHLDLSSNNLSNA---IPESLGNLVKLHYLNLSNNQFSWEIPIKLEELIHLSELDLSYNFLGRAIPSQICIM 647 (1067)
Q Consensus 571 ~~~~~~~L~~L~Ls~N~l~~~---~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 647 (1067)
.+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++..+..|..++.|++|++++|++++..+..+..+
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 87378878889898998885434543124048876688799996670686463265678889898980686896684756
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 4564001246513565551123574221998125757898999
Q 001494 648 QSLEKLNLSHNSLSGVIPRCFEEMHALQCIDISYNELRGPIPN 690 (1067)
Q Consensus 648 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~ 690 (1067)
+.| .|++++|++++..+..+..+++|+.+++++|++.|.++.
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 651-898768941426876625677878896779986166775
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=474.21 Aligned_cols=522 Identities=21% Similarity=0.205 Sum_probs=255.3
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97566853598233578976433476645306887345889965323233434202342222678876666443332001
Q 001494 73 PHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNLFSGAIPPQIGHLSYLKTLHLFKNQLSGSIPLEVGGLSSLNNLAL 152 (1067)
Q Consensus 73 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 152 (1067)
+.+++|+|++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC----EEECCCC
Q ss_conf 1253456568775688865399976358768-5577656623244010214543465588877643355----2312567
Q 001494 153 YSNYLEDIIPHSLGNLTNLVTLCLYNNLLSG-SIPSEIGNLKYLLDLNLYNNELNGSIPQSLGNLSNLA----MLNLSSN 227 (1067)
Q Consensus 153 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~L~ls~n 227 (1067)
++|.+.++.+..++.+++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..++.+++|+ .|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCC
T ss_conf 37755544511348988779896878852325306867326777788766885310573341212034200243004689
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 677997854677644781572076466-5458643475541568870642532488755467865579941233458766
Q 001494 228 SLFGSIPSELGNLKYLSDLKLADNKLN-GSIPHSLCNLTNLVILYIYNNSLSGLIPSEIGNLKFLSKIALSYNKFSGLIP 306 (1067)
Q Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 306 (1067)
.+.+..+..+... +|+.|++++|.+. +..|..+..+++|+.+++..+.+.+.. .+ ....+
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l----------~~~~~ 252 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NL----------EIFEP 252 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CC----------SCCCG
T ss_pred CCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC--------CC----------CCCCH
T ss_conf 7532571105676-04335246785616677888602665652314111103677--------41----------02681
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 64467764317863687776778721236898886980-08502334883432878999388338867655673457999
Q 001494 307 HSLGNLSNIAFLFLDSNSLFGLIPSELRNLKSLSILEL-GNNKLCGSIPHFLGNLTNLSVLFIYNNSLSGSIPCEIGNLK 385 (1067)
Q Consensus 307 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L-~~N~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 385 (1067)
..+.++. .+ .++.+++ ..|.+.+..+. +..+++|+.|++++|.+. .++ .+..++
T Consensus 253 ~~~~~l~---------------------~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~ 307 (606)
T 3vq2_A 253 SIMEGLC---------------------DV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHF 307 (606)
T ss_dssp GGGTTGG---------------------GS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTC
T ss_pred HHHHHHH---------------------HC-CHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCH-HHH-HCCCCC
T ss_conf 7766665---------------------43-4745012366555543222-354887898771476604-435-433401
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 99979764786645699740002477679802683765696211076888589689984667789987877551885058
Q 001494 386 SLSYLNLAFNKLTSSIPISLSNLTNLSVLSFYKNSLSGAIPKEYRNLVKLTKLFLGDNQFQGPIPNLKNLTSLVRVHLDR 465 (1067)
Q Consensus 386 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~~~~L~~L~l~~ 465 (1067)
+|+.|++++|.+. .+| .+ .+++|+.|++++|...... .+..+++|++|++++|.+.+...
T Consensus 308 ~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~--------------- 367 (606)
T 3vq2_A 308 KWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGC--------------- 367 (606)
T ss_dssp CCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEE---------------
T ss_pred CCCEEECCCCCCC-CCC-CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCC---------------
T ss_conf 1778976466676-546-67-8875564454478685310--00248988879775873687752---------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 63344654212367860199724643458788887888974167436872389889-86557887749976897124767
Q 001494 466 NYLTSNISESFYIYPNLTFIDLSYNNLYGEISSDWGRCPKLGALDFSKNNITGNIP-PKIGYSSQLEVLDLSSNHVVGDI 544 (1067)
Q Consensus 466 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~ 544 (1067)
....+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..
T Consensus 368 ------~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 368 ------CSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp ------CCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred ------HHHHHCCCCCCCEEECCCCCCCCCH-HHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC
T ss_conf ------0122146775548678899530005-540688888965898870587537645646213788989689787433
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHC
Q ss_conf 3000578744533404460457853111334434089912898899-863112441224400135753344411221100
Q 001494 545 PAELGKLSFLIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNNLSN-AIPESLGNLVKLHYLNLSNNQFSWEIPIKLEEL 623 (1067)
Q Consensus 545 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 623 (1067)
+..+ ..+++|+.|++++|.+.+ ..+..|..+++|+.|++++|.+++..+..|..+
T Consensus 441 ~~~~------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 441 DGIF------------------------LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTT------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred HHHH------------------------CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 5553------------------------4778789898989837985467760457889989898885776486561546
Q ss_pred CCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCC
Q ss_conf 1236111456547886245431144564001246513565551123574-221998125757898999
Q 001494 624 IHLSELDLSYNFLGRAIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEMH-ALQCIDISYNELRGPIPN 690 (1067)
Q Consensus 624 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~ls~N~l~~~~~~~~~~l~-~L~~l~l~~N~l~~~~~~ 690 (1067)
++|++|++++|++++..+..+..+++|+.|++++|+++.+ +..+..++ +|+.+++++|++.|.++.
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC-CHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 4689898989957874877706887689888989837666-876752102174887628986647764
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=473.77 Aligned_cols=394 Identities=20% Similarity=0.290 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHCCCCC------CCCCCCCCCCCCCCCCCCCCE---EEEECCCCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 67999999986145699------999889999899998578620---159819999522665101355443368757889
Q 001494 2 EEAHALLRWKTSLQNHN------NGSPLSSWTFNNVTKIGSCAW---VGIHCNHGGRVNSINLTSIGLKGTLHDFSFSSF 72 (1067)
Q Consensus 2 ~~~~~ll~~k~~~~~~~------~~~~l~sw~~~~~~~~~~c~w---~gv~C~~~~~v~~l~l~~~~l~~~l~~~~~~~l 72 (1067)
.|+.||.++++++.... +....++|++ ..+||.| .||+|+..|||++++|...++.|.+++ .+..+
T Consensus 30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~----~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~~L 104 (636)
T 4eco_A 30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQL 104 (636)
T ss_dssp HHHHHHHHHHHHTTGGGCCCCC------CCCCC----SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGGGC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCH-HHHCC
T ss_conf 889999999997589974547767765788777----9980001477984876789788998427665772885-78568
Q ss_pred CCCCEEECCCCCCC------C------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCCC
Q ss_conf 97566853598233------5------78976433476645306887345889965323-23343420234222267887
Q 001494 73 PHLAYLDLWSNQLF------G------NIPPQIGNISKLKYLDLSSNLFSGAIPPQIGH-LSYLKTLHLFKNQLSGSIPL 139 (1067)
Q Consensus 73 ~~L~~L~l~~n~~~------~------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~ 139 (1067)
++|++|+|++|.+. + .+|... +..|+ ++++.|.+.+.+|..+.. +..+..+++....+..
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~---- 177 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK---- 177 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC----
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC----
T ss_conf 451189876885123774334532356733888--88887-65777554117066677887777642755465410----
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCEECCCCCCCCCCCCCCCC--
Q ss_conf 66664433320011--2534565687756888653999763587685-577656623244010214543465588877--
Q 001494 140 EVGGLSSLNNLALY--SNYLEDIIPHSLGNLTNLVTLCLYNNLLSGS-IPSEIGNLKYLLDLNLYNNELNGSIPQSLG-- 214 (1067)
Q Consensus 140 ~~~~l~~L~~L~l~--~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-- 214 (1067)
.....++.+.+. .|.+++ +|..++++++|++|++++|.+++. ++.... ....+...+.+|..++
T Consensus 178 --~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--------~~~~~~~~~~ip~~l~~~ 246 (636)
T 4eco_A 178 --SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE--------NENSEYAQQYKTEDLKWD 246 (636)
T ss_dssp --CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS--------CTTSHHHHHHTTSCCCGG
T ss_pred --CCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCC--------CCCCCHHCCCCCHHHHHC
T ss_conf --13344213001013677750-7877725647878988688236642322122--------222100102486322004
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCC-CCCCCCCCC------CCEEEEEEECCCCCCCCCC--C
Q ss_conf 64335523125676779978546776447815720764-665-458643475------5415688706425324887--5
Q 001494 215 NLSNLAMLNLSSNSLFGSIPSELGNLKYLSDLKLADNK-LNG-SIPHSLCNL------TNLVILYIYNNSLSGLIPS--E 284 (1067)
Q Consensus 215 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~ 284 (1067)
++++|+.|++++|.+.+.+|..++++++|+.|++++|+ +++ .+|..+..+ ++|+.|++++|.++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHH
T ss_conf 468788898048857762838883499978897847988766533578875430465788888989799377-6676555
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-C
Q ss_conf 546786557994123345876664467764317863687776778721236898886980085023348834328789-9
Q 001494 285 IGNLKFLSKIALSYNKFSGLIPHSLGNLSNIAFLFLDSNSLFGLIPSELRNLKSLSILELGNNKLCGSIPHFLGNLTN-L 363 (1067)
Q Consensus 285 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~-L 363 (1067)
+..+++|+.|++++|.+.+.+| .+..+ ++|+.|++++|.++ .+|..+..+++ |
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~~L 379 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSE------------------------IKLASLNLAYNQIT-EIPANFCGFTEQV 379 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEE------------------------EEESEEECCSSEEE-ECCTTSEEECTTC
T ss_pred HCCCCCCCEEECCCCCCCCCHH-HHCCC------------------------CCCCEEECCCCCCC-CCCHHHHHHCCCC
T ss_conf 4257888989690880705166-64788------------------------98898989899403-0337565102368
Q ss_pred CEEECCCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCC-------CCCCCCEEECCCCCCCCCCCHHHHCCCC
Q ss_conf 9388338867655673457999--999797647866456997400-------0247767980268376569621107688
Q 001494 364 SVLFIYNNSLSGSIPCEIGNLK--SLSYLNLAFNKLTSSIPISLS-------NLTNLSVLSFYKNSLSGAIPKEYRNLVK 434 (1067)
Q Consensus 364 ~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 434 (1067)
++|++++|.+. .+|..+..+. +|++|++++|.+++..|..+. .+++|+.|++++|.++...+..+..+++
T Consensus 380 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 380 ENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp CEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred CEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 68985298275-44665533345766889774885788652442002201125898888977279668678788715898
Q ss_pred CCEEECCCCCCC
Q ss_conf 858968998466
Q 001494 435 LTKLFLGDNQFQ 446 (1067)
Q Consensus 435 L~~L~L~~n~l~ 446 (1067)
|++|++++|.+.
T Consensus 459 L~~L~Ls~N~l~ 470 (636)
T 4eco_A 459 LSSINLMGNMLT 470 (636)
T ss_dssp CSEEECCSSCCS
T ss_pred CCEEECCCCCCC
T ss_conf 898989799788
Done!