Query 001496
Match_columns 1066
No_of_seqs 187 out of 190
Neff 2.2
Searched_HMMs 29240
Date Tue Mar 26 16:37:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001496.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_797-801//hhsearch_pdb/001496hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 1.0 1 1 50.9 -0.7 42 675-716 46-89 (156)
2 3q2s_C Cleavage and polyadenyl 1.0 1 1 49.9 -1.2 44 674-717 74-121 (229)
3 2j8a_A Histone-lysine N-methyl 1.0 1 1 44.3 -1.6 42 676-717 14-57 (136)
4 3pgw_S U1-70K; protein-RNA com 1.0 1 1 43.2 4.3 42 675-716 109-152 (437)
5 2lxi_A RNA-binding protein 10; 1.0 1 1 42.5 -0.2 43 675-717 8-53 (91)
6 2lkz_A RNA-binding protein 5; 1.0 1 1 41.7 0.9 43 675-717 16-62 (95)
7 2m2b_A RNA-binding protein 10; 1.0 1 1 40.4 1.1 44 674-717 29-76 (131)
8 3s8s_A Histone-lysine N-methyl 1.0 1 1 40.4 -1.4 43 675-717 13-57 (110)
9 4fxv_A ELAV-like protein 1; RN 1.0 1 1 40.3 -1.8 42 675-716 26-69 (99)
10 1s79_A Lupus LA protein; RRM, 1.0 1 1 40.0 -0.3 42 675-717 18-61 (103)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=1.00 E-value=1 Score=50.94 Aligned_cols=42 Identities=10% Similarity=-0.126 Sum_probs=39.1
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 8988876445346--55687301206899888888888877789
Q 001496 675 SGSDDANQESSWG--KKQGNWNSGSRDGHQESSWGKKSDWNSRS 716 (1066)
Q Consensus 675 SLSFDANEDSVWe--se~GSI~SVRIPTDqESG~pKGFGYV~~~ 716 (1066)
-|+++++++.|.+ ++||.|..|+|+.+++++.+|+|+||++.
T Consensus 46 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 89 (156)
T 1h2v_Z 46 NLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 89 (156)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEEC
T ss_conf 99998899999999983398689998754899954408999979
No 2
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=1.00 E-value=1 Score=49.90 Aligned_cols=44 Identities=7% Similarity=-0.187 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCCC--CCCC--CCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 88988876445346--5568--73012068998888888888777899
Q 001496 674 NSGSDDANQESSWG--KKQG--NWNSGSRDGHQESSWGKKSDWNSRSE 717 (1066)
Q Consensus 674 nSLSFDANEDSVWe--se~G--SI~SVRIPTDqESG~pKGFGYV~~~e 717 (1066)
.-|+++++++.|.+ ++|| .|..|+|+.|++|+..|+|+||++..
T Consensus 74 gnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~ 121 (229)
T 3q2s_C 74 GNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGS 121 (229)
T ss_dssp ESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred ECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECC
T ss_conf 598998999999999998789635899987548999505389999798
No 3
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=44.31 Aligned_cols=42 Identities=12% Similarity=-0.058 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 988876445346--556873012068998888888888777899
Q 001496 676 GSDDANQESSWG--KKQGNWNSGSRDGHQESSWGKKSDWNSRSE 717 (1066)
Q Consensus 676 LSFDANEDSVWe--se~GSI~SVRIPTDqESG~pKGFGYV~~~e 717 (1066)
-++.++++.|.+ ++||+|.++++.+||+|+.++||++|.+.+
T Consensus 14 ~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 14 TTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEECC
T ss_conf 99988999999999864982799987669988442189999788
No 4
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=1.00 E-value=1 Score=43.23 Aligned_cols=42 Identities=7% Similarity=-0.118 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 8988876445346--55687301206899888888888877789
Q 001496 675 SGSDDANQESSWG--KKQGNWNSGSRDGHQESSWGKKSDWNSRS 716 (1066)
Q Consensus 675 SLSFDANEDSVWe--se~GSI~SVRIPTDqESG~pKGFGYV~~~ 716 (1066)
-|+++++++.|.+ .+||.|..|.|+.|+.++.+++|+||++.
T Consensus 109 nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~ 152 (437)
T 3pgw_S 109 RVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYE 152 (437)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEC
T ss_conf 89998999999999987098648774115888973515888623
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=42.50 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCC--CCCC-CCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8988876445346--5568-73012068998888888888777899
Q 001496 675 SGSDDANQESSWG--KKQG-NWNSGSRDGHQESSWGKKSDWNSRSE 717 (1066)
Q Consensus 675 SLSFDANEDSVWe--se~G-SI~SVRIPTDqESG~pKGFGYV~~~e 717 (1066)
-|+++++|+.|.+ ++|| .|.+|+|+.|++|+.+|||+||.+..
T Consensus 8 nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~ 53 (91)
T 2lxi_A 8 MLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH 53 (91)
T ss_dssp TCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCEEEEEECC
T ss_conf 9999999999998998749875899998549999857528999649
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=41.74 Aligned_cols=43 Identities=7% Similarity=-0.100 Sum_probs=38.6
Q ss_pred CCCCCCCCCCCCC--CCCC--CCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8988876445346--5568--73012068998888888888777899
Q 001496 675 SGSDDANQESSWG--KKQG--NWNSGSRDGHQESSWGKKSDWNSRSE 717 (1066)
Q Consensus 675 SLSFDANEDSVWe--se~G--SI~SVRIPTDqESG~pKGFGYV~~~e 717 (1066)
-|+++++++.|.+ ++|| .+..|+++.|+.|+.+|||+||.+..
T Consensus 16 nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~ 62 (95)
T 2lkz_A 16 NIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSS 62 (95)
T ss_dssp SCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECC
T ss_conf 89986899999999986289608999998528999776576999899
No 7
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=40.43 Aligned_cols=44 Identities=9% Similarity=-0.005 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCC--CCCCCCEE--EECCCCCCCCCCCCCCCCCCCC
Q ss_conf 88988876445346--55687301--2068998888888888777899
Q 001496 674 NSGSDDANQESSWG--KKQGNWNS--GSRDGHQESSWGKKSDWNSRSE 717 (1066)
Q Consensus 674 nSLSFDANEDSVWe--se~GSI~S--VRIPTDqESG~pKGFGYV~~~e 717 (1066)
.-|+++++++.|.+ ++||.|.. |+|+.|++|+..|||+||.+..
T Consensus 29 ~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~ 76 (131)
T 2m2b_A 29 RNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLST 76 (131)
T ss_dssp CSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCH
T ss_pred ECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECC
T ss_conf 298988999999999997498342468998769999866589999888
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=40.36 Aligned_cols=43 Identities=9% Similarity=-0.130 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8988876445346--556873012068998888888888777899
Q 001496 675 SGSDDANQESSWG--KKQGNWNSGSRDGHQESSWGKKSDWNSRSE 717 (1066)
Q Consensus 675 SLSFDANEDSVWe--se~GSI~SVRIPTDqESG~pKGFGYV~~~e 717 (1066)
-|+++++++.|.+ ++||.|..|+|+.|++|+..|||+||++..
T Consensus 13 nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~ 57 (110)
T 3s8s_A 13 RLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTS 57 (110)
T ss_dssp SCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEECC
T ss_conf 999999999999999856974489997779999460699999897
No 9
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=40.31 Aligned_cols=42 Identities=7% Similarity=-0.038 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 8988876445346--55687301206899888888888877789
Q 001496 675 SGSDDANQESSWG--KKQGNWNSGSRDGHQESSWGKKSDWNSRS 716 (1066)
Q Consensus 675 SLSFDANEDSVWe--se~GSI~SVRIPTDqESG~pKGFGYV~~~ 716 (1066)
-|+++++++.|.+ ++||.|.+|+++.|++|+.+|||+||.+.
T Consensus 26 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~ 69 (99)
T 4fxv_A 26 YLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV 69 (99)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEES
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEC
T ss_conf 99998999999999971498888675453888950621899987
No 10
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=1.00 E-value=1 Score=40.00 Aligned_cols=42 Identities=12% Similarity=-0.113 Sum_probs=38.6
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8988876445346--556873012068998888888888777899
Q 001496 675 SGSDDANQESSWG--KKQGNWNSGSRDGHQESSWGKKSDWNSRSE 717 (1066)
Q Consensus 675 SLSFDANEDSVWe--se~GSI~SVRIPTDqESG~pKGFGYV~~~e 717 (1066)
-|+++++++.|.+ ++||.|.+|+|+.|++ +.+|||+||++..
T Consensus 18 ~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~ 61 (103)
T 1s79_A 18 GFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDS 61 (103)
T ss_dssp CCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESS
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEEECCC-CCCCCEEEEEECC
T ss_conf 9999999999999986169889999998899-9875589999887
Done!