Query 001497
Match_columns 1066
No_of_seqs 776 out of 4800
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-62 3.4E-67 624.5 42.3 542 352-982 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 8.4E-57 1.8E-61 572.0 41.9 521 375-983 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.6E-40 1E-44 346.5 6.3 376 529-985 81-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.7E-38 1E-42 331.4 3.5 363 505-948 81-446 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2E-39 4.4E-44 327.2 -14.5 477 351-954 44-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.5E-38 5.5E-43 319.3 -13.2 437 470-978 84-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 6.3E-33 1.4E-37 294.3 -2.1 393 454-959 9-409 (1255)
8 KOG0618 Serine/threonine phosp 100.0 3.1E-33 6.8E-38 311.8 -7.1 486 353-951 22-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.4E-32 5.1E-37 290.0 -4.7 369 525-981 6-378 (1255)
10 KOG0618 Serine/threonine phosp 100.0 5.9E-31 1.3E-35 293.8 -0.6 474 469-979 13-490 (1081)
11 KOG4237 Extracellular matrix p 99.9 2.7E-27 5.9E-32 239.8 -2.4 284 519-816 60-346 (498)
12 KOG4237 Extracellular matrix p 99.9 2.5E-27 5.4E-32 240.0 -3.1 398 530-951 50-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 3.8E-22 8.3E-27 253.3 28.4 339 521-928 553-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 2.3E-22 5.1E-27 255.2 26.4 340 542-951 549-903 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1.4E-21 3E-26 228.2 17.3 266 552-939 202-467 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 7.1E-21 1.5E-25 222.3 17.2 268 526-916 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 5.1E-19 1.1E-23 208.7 11.1 118 552-685 179-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.2E-19 1.3E-23 208.0 11.6 158 529-709 181-338 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 9E-19 1.9E-23 194.1 -1.8 57 580-636 3-63 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-18 3.4E-23 192.2 0.1 207 555-806 2-235 (319)
21 KOG0617 Ras suppressor protein 99.6 6.3E-18 1.4E-22 151.8 -5.0 160 742-959 31-191 (264)
22 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.2E-22 149.5 -4.1 164 718-941 32-196 (264)
23 PLN03150 hypothetical protein; 99.6 3.2E-15 7E-20 176.9 10.8 118 870-987 419-538 (623)
24 PLN03150 hypothetical protein; 99.3 3.1E-12 6.8E-17 151.6 10.9 114 793-959 419-533 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 3.5E-13 7.7E-18 144.4 -4.9 173 721-956 77-249 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 1.2E-12 2.5E-17 140.5 -4.6 194 648-928 75-271 (722)
27 COG4886 Leucine-rich repeat (L 99.1 6.4E-11 1.4E-15 134.9 8.4 198 676-959 97-295 (394)
28 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3E-15 132.2 7.4 36 649-685 141-176 (394)
29 KOG3207 Beta-tubulin folding c 99.0 5.1E-11 1.1E-15 124.4 1.5 217 19-260 119-339 (505)
30 KOG1909 Ran GTPase-activating 99.0 1E-10 2.2E-15 119.0 2.4 69 216-284 180-253 (382)
31 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.4E-15 121.9 2.5 115 168-283 119-233 (505)
32 PF14580 LRR_9: Leucine-rich r 99.0 3.5E-10 7.5E-15 108.7 5.3 119 56-183 7-126 (175)
33 KOG1909 Ran GTPase-activating 99.0 1.3E-10 2.8E-15 118.2 2.3 68 346-413 235-310 (382)
34 KOG1259 Nischarin, modulator o 98.9 1.7E-10 3.6E-15 114.1 0.1 60 743-805 283-342 (490)
35 KOG1259 Nischarin, modulator o 98.9 3.7E-10 8E-15 111.7 2.2 226 19-261 180-413 (490)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.6E-09 3.5E-14 104.1 6.0 130 41-178 14-148 (175)
37 KOG4341 F-box protein containi 98.8 3.8E-10 8.2E-15 117.4 -1.4 290 94-386 139-436 (483)
38 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.8E-14 84.1 3.5 60 870-929 2-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.8 4.4E-09 9.5E-14 82.9 3.0 61 893-953 1-61 (61)
40 KOG4341 F-box protein containi 98.7 1.3E-09 2.9E-14 113.4 -1.1 163 217-382 290-458 (483)
41 KOG0531 Protein phosphatase 1, 98.7 2.2E-09 4.7E-14 122.2 -0.6 225 644-958 91-322 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.6 2.7E-08 5.8E-13 120.6 5.3 132 43-181 520-653 (889)
43 KOG0531 Protein phosphatase 1, 98.6 8.6E-09 1.9E-13 117.3 -1.1 127 20-158 71-199 (414)
44 KOG4658 Apoptotic ATPase [Sign 98.5 8.6E-08 1.9E-12 116.2 6.5 84 620-704 567-650 (889)
45 KOG2120 SCF ubiquitin ligase, 98.5 5.8E-09 1.3E-13 103.5 -3.0 183 123-307 187-373 (419)
46 KOG2120 SCF ubiquitin ligase, 98.5 6.2E-09 1.4E-13 103.3 -3.1 187 146-335 186-374 (419)
47 KOG2982 Uncharacterized conser 98.4 9.6E-08 2.1E-12 95.0 1.2 210 20-234 44-262 (418)
48 KOG2982 Uncharacterized conser 98.4 7.1E-08 1.5E-12 95.9 0.3 62 120-183 70-134 (418)
49 KOG4579 Leucine-rich repeat (L 98.3 3.9E-08 8.6E-13 86.2 -3.2 64 870-936 78-141 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.3 7.1E-07 1.5E-11 87.8 4.7 150 169-318 156-324 (388)
51 KOG3665 ZYG-1-like serine/thre 98.2 7.9E-07 1.7E-11 105.1 3.7 83 20-102 147-229 (699)
52 KOG1859 Leucine-rich repeat pr 98.2 7.5E-08 1.6E-12 107.0 -5.6 201 21-234 84-292 (1096)
53 KOG1859 Leucine-rich repeat pr 98.2 4.4E-08 9.6E-13 108.8 -7.4 180 14-209 102-293 (1096)
54 COG5238 RNA1 Ran GTPase-activa 98.1 1.9E-06 4.1E-11 84.9 3.9 196 90-285 27-255 (388)
55 KOG3665 ZYG-1-like serine/thre 98.1 1.9E-06 4E-11 102.1 3.5 186 8-200 71-280 (699)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 57.1 3.3 36 894-930 2-37 (44)
57 KOG4579 Leucine-rich repeat (L 97.8 8E-07 1.7E-11 78.2 -4.2 105 528-637 29-136 (177)
58 PRK15386 type III secretion pr 97.7 7.5E-05 1.6E-09 81.1 8.3 57 893-953 156-218 (426)
59 PF12799 LRR_4: Leucine Rich r 97.7 2.5E-05 5.3E-10 55.9 2.6 37 870-907 2-38 (44)
60 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 69.7 5.4 85 94-184 43-127 (233)
61 PF13306 LRR_5: Leucine rich r 97.4 0.00035 7.6E-09 65.2 7.2 106 545-656 6-111 (129)
62 KOG1644 U2-associated snRNP A' 97.4 0.00025 5.4E-09 67.6 5.5 129 23-158 21-153 (233)
63 PRK15386 type III secretion pr 97.4 0.00065 1.4E-08 74.0 9.4 15 501-515 51-65 (426)
64 KOG2123 Uncharacterized conser 97.4 1E-05 2.3E-10 80.1 -4.0 83 45-133 18-100 (388)
65 PF13306 LRR_5: Leucine rich r 97.3 0.0005 1.1E-08 64.1 6.9 125 567-698 4-128 (129)
66 KOG1947 Leucine rich repeat pr 97.1 0.00012 2.5E-09 86.5 -0.7 115 169-283 187-306 (482)
67 KOG2123 Uncharacterized conser 97.0 2.8E-05 6.2E-10 77.1 -5.4 105 20-127 18-123 (388)
68 KOG1947 Leucine rich repeat pr 97.0 0.00016 3.5E-09 85.4 -0.3 244 90-364 185-439 (482)
69 KOG2739 Leucine-rich acidic nu 96.8 0.00067 1.4E-08 67.8 2.2 88 90-183 40-129 (260)
70 KOG2739 Leucine-rich acidic nu 96.8 0.00072 1.6E-08 67.6 2.4 112 42-156 39-154 (260)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0052 1.1E-07 36.4 0.9 12 895-906 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0051 1.1E-07 36.4 0.4 21 918-939 1-21 (22)
73 KOG4308 LRR-containing protein 92.7 0.0026 5.5E-08 72.5 -8.9 88 95-182 89-184 (478)
74 KOG4308 LRR-containing protein 92.5 0.0032 7E-08 71.7 -8.4 40 147-186 89-131 (478)
75 PF13504 LRR_7: Leucine rich r 91.0 0.14 3E-06 28.0 1.3 11 895-905 3-13 (17)
76 KOG0473 Leucine-rich repeat pr 89.7 0.011 2.3E-07 57.8 -6.5 82 870-954 43-124 (326)
77 smart00369 LRR_TYP Leucine-ric 88.6 0.38 8.3E-06 29.8 2.1 13 894-906 3-15 (26)
78 smart00370 LRR Leucine-rich re 88.6 0.38 8.3E-06 29.8 2.1 13 894-906 3-15 (26)
79 KOG3864 Uncharacterized conser 87.7 0.16 3.5E-06 49.1 -0.0 81 94-178 102-184 (221)
80 PF13504 LRR_7: Leucine rich r 87.6 0.37 8.1E-06 26.3 1.4 12 577-588 3-14 (17)
81 smart00370 LRR Leucine-rich re 87.3 0.46 9.9E-06 29.4 1.9 23 791-813 1-23 (26)
82 smart00369 LRR_TYP Leucine-ric 87.3 0.46 9.9E-06 29.4 1.9 23 791-813 1-23 (26)
83 KOG0473 Leucine-rich repeat pr 83.7 0.04 8.7E-07 54.0 -6.2 99 876-977 25-123 (326)
84 KOG4242 Predicted myosin-I-bin 82.9 5.5 0.00012 44.0 8.6 42 321-362 437-478 (553)
85 PF13516 LRR_6: Leucine Rich r 82.1 0.35 7.6E-06 29.2 -0.4 13 918-930 3-15 (24)
86 PF13516 LRR_6: Leucine Rich r 79.2 1.7 3.8E-05 26.1 2.0 22 247-268 2-23 (24)
87 KOG3864 Uncharacterized conser 77.2 0.55 1.2E-05 45.6 -0.9 65 122-186 102-168 (221)
88 smart00365 LRR_SD22 Leucine-ri 74.8 2.5 5.5E-05 26.1 1.8 15 916-930 1-15 (26)
89 PF08693 SKG6: Transmembrane a 68.9 2.2 4.9E-05 29.3 0.7 26 1013-1038 13-38 (40)
90 smart00364 LRR_BAC Leucine-ric 62.7 4.9 0.00011 24.8 1.3 13 894-906 3-15 (26)
91 TIGR00864 PCC polycystin catio 58.6 2.8 6E-05 56.8 -0.5 34 923-956 1-34 (2740)
92 smart00368 LRR_RI Leucine rich 55.0 14 0.00031 23.2 2.6 23 247-269 2-24 (28)
93 KOG4242 Predicted myosin-I-bin 52.6 76 0.0016 35.6 9.0 142 220-366 164-313 (553)
94 PF15102 TMEM154: TMEM154 prot 49.8 8.6 0.00019 35.3 1.2 22 1017-1038 66-87 (146)
95 PF01102 Glycophorin_A: Glycop 39.0 12 0.00026 33.6 0.4 18 1016-1033 70-87 (122)
96 KOG3763 mRNA export factor TAP 37.8 29 0.00063 39.6 3.3 82 195-278 218-307 (585)
97 KOG3763 mRNA export factor TAP 36.4 20 0.00043 40.9 1.7 39 219-257 216-254 (585)
98 TIGR00864 PCC polycystin catio 29.9 31 0.00067 47.6 2.2 32 875-906 1-32 (2740)
99 smart00367 LRR_CC Leucine-rich 29.4 18 0.00039 22.2 0.0 13 20-32 1-13 (26)
100 PF08374 Protocadherin: Protoc 27.9 52 0.0011 32.5 2.8 28 1009-1037 37-64 (221)
101 PHA03099 epidermal growth fact 27.1 19 0.00041 31.9 -0.2 30 1017-1046 107-136 (139)
102 PTZ00382 Variant-specific surf 23.8 33 0.00071 29.6 0.6 7 1014-1020 70-76 (96)
103 PF08114 PMP1_2: ATPase proteo 23.5 91 0.002 21.6 2.4 9 1031-1039 28-36 (43)
104 PF04478 Mid2: Mid2 like cell 23.4 21 0.00045 33.2 -0.7 8 1015-1022 56-63 (154)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-62 Score=624.48 Aligned_cols=542 Identities=34% Similarity=0.517 Sum_probs=494.6
Q ss_pred CCCcEEECCCCccccccchhccCCCCCcEEecccCcCcCCCCCccccCCCCCCEEEcccCcccccCCcccccCCCCccEE
Q 001497 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 431 (1066)
Q Consensus 352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l 431 (1066)
.+++.|++++|.+.+.++..|..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+.+|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 47899999999999988999999999999999999998888655566899999999999998877664 345677777
Q ss_pred ecCCCcccccccccCCCCCcccceEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccC
Q 001497 432 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 511 (1066)
Q Consensus 432 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 511 (1066)
++++|.+. +.+|..+..+++|+.|++++|.+.+.+|.. +.++++|+.|++++
T Consensus 146 ~Ls~n~~~---------------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~ 197 (968)
T PLN00113 146 DLSNNMLS---------------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLAS 197 (968)
T ss_pred ECcCCccc---------------------------ccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccC
Confidence 77776643 245666777889999999999998888887 57899999999999
Q ss_pred CcccCcCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCcccc
Q 001497 512 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 591 (1066)
Q Consensus 512 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i 591 (1066)
|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|++++.+
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 9999988988999999999999999999889988775 899999999999999999999999999999999999999888
Q ss_pred ChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCC
Q 001497 592 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 671 (1066)
Q Consensus 592 p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 671 (1066)
|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+
T Consensus 277 p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 277 PPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred chhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 88874 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCC-CCcccEEEcCCCccccccCcccccCCCCccEEE
Q 001497 672 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 750 (1066)
Q Consensus 672 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 750 (1066)
++|+.|++++|++.+.+|..++.+++|+.|++++|++.+.+|..+. ..+|+.|++++|.+.+.+|. .|..+++|+.|+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ 434 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLD 434 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEE
Confidence 9999999999999999999999999999999999999999888765 46899999999999998887 899999999999
Q ss_pred ccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCC
Q 001497 751 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 830 (1066)
Q Consensus 751 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 830 (1066)
+++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..|.+++
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-------------- 499 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-------------- 499 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh--------------
Confidence 99999999999999999999999999999999888766 468999999999999999988776543
Q ss_pred CccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccc
Q 001497 831 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 910 (1066)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 910 (1066)
.|+.|+|++|++++.+|..++.+++|++|+|++|.++|.+|
T Consensus 500 ---------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 500 ---------------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred ---------------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 78999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCCCCCC
Q 001497 911 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 982 (1066)
Q Consensus 911 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~ 982 (1066)
..|+++++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|. .+++.++...++.|||++|+.+
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999998 7899999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.4e-57 Score=572.04 Aligned_cols=521 Identities=32% Similarity=0.513 Sum_probs=483.7
Q ss_pred CCCCcEEecccCcCcCCCCCccccCCCCCCEEEcccCcccccCCcccccCCCCccEEecCCCcccccccccCCCCCcccc
Q 001497 375 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 454 (1066)
Q Consensus 375 l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L 454 (1066)
..+++.|++++|.+++.+ +..+..+++|++|++++|.+.+.+|...+.++++|++|++++|.+.+..+.
T Consensus 68 ~~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---------- 136 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---------- 136 (968)
T ss_pred CCcEEEEEecCCCccccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc----------
Confidence 357999999999999887 678999999999999999999888887777999999999999987643221
Q ss_pred eEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccCcCCCCCCCCCCccEEEcc
Q 001497 455 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVS 534 (1066)
Q Consensus 455 ~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 534 (1066)
..++.|++|++++|.+.+.+|.. +.++++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 137 -------------------~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 137 -------------------GSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred -------------------cccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 23467899999999999999987 5789999999999999999999999999999999999
Q ss_pred CCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccc
Q 001497 535 NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 614 (1066)
Q Consensus 535 ~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~ 614 (1066)
+|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+
T Consensus 197 ~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 197 SNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred CCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeec
Confidence 99999999988776 8999999999999999999999999999999999999998899876 589999999999999999
Q ss_pred cccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccC
Q 001497 615 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 694 (1066)
Q Consensus 615 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 694 (1066)
..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEccCCcccccCCCCCCC-CcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEE
Q 001497 695 LDSLQILDISDNNISGSLPSCFYP-LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 773 (1066)
Q Consensus 695 l~~L~~L~l~~n~~~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 773 (1066)
+++|+.|++++|++++.+|..+.. .+++.+++++|.+.+.+|. .+..+++|+.|++++|++++.+|..+..+++|+.|
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 999999999999999999987754 5899999999999999988 89999999999999999999999999999999999
Q ss_pred eCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhh
Q 001497 774 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE 853 (1066)
Q Consensus 774 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1066)
++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--------------------------------------- 474 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--------------------------------------- 474 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---------------------------------------
Confidence 99999999999999999999999999999999888875532
Q ss_pred hhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCcccc
Q 001497 854 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933 (1066)
Q Consensus 854 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i 933 (1066)
+.|+.||+++|++++.+|..|.++++|+.|+|++|++++.+|..++++++|++|+|++|+++|.+
T Consensus 475 ---------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 475 ---------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred ---------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 26899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCCCCCCC
Q 001497 934 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 983 (1066)
Q Consensus 934 p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l 983 (1066)
|..+..++.|+.|++++|+++|.+|.....+..+....+.+|+..+..|.
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 99999999999999999999999998788888889999999998886653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-40 Score=346.53 Aligned_cols=376 Identities=26% Similarity=0.306 Sum_probs=233.5
Q ss_pred cEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEcc
Q 001497 529 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 608 (1066)
Q Consensus 529 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~ 608 (1066)
+.|++++|++. .+....+..+++|+.+++.+|.++ .+|..-+...+++.|+|.+|.|+ ++.......++.|+.||||
T Consensus 81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence 34555555554 344444444555555555555555 44444334444555555555554 4443333444555555555
Q ss_pred CccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCC
Q 001497 609 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 688 (1066)
Q Consensus 609 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 688 (1066)
.|.|+.+....|..-.++++|+|++|.|+...-..|..+.+|.+|.|+.|+++...+..|.++++|+.|+|..|++.-.-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 55555444444444455555555555555444445555555555555555555444444445555555555555554322
Q ss_pred CccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCC
Q 001497 689 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 768 (1066)
Q Consensus 689 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 768 (1066)
--.|.++++|+.|.+..|.++ .+..++|.++.++++|+|+.|+++..-..|+.+++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccccc
Confidence 334455555555555555544 35555778888888888888888777777888888
Q ss_pred CCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001497 769 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 848 (1066)
Q Consensus 769 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (1066)
+|+.|+++.|.|..+.++.+...++|+.|||++|+++...+..|..+
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L--------------------------------- 340 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL--------------------------------- 340 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH---------------------------------
Confidence 88888888888887777777777888888888888877766666543
Q ss_pred hhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccch---hccCCCCCCEEeCC
Q 001497 849 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL---TFSNLRHIESLDLS 925 (1066)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls 925 (1066)
..|++|.|++|++...-...|..+++|++|||++|.+++.|.+ .|.+|++|+.|+|.
T Consensus 341 --------------------~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 341 --------------------SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred --------------------HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 3677777777777766666777777777777777777776653 46677777777777
Q ss_pred CCcCccccCccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCCCCCCCCC
Q 001497 926 YNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 985 (1066)
Q Consensus 926 ~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l~~ 985 (1066)
+|+|..+-..+|.++..|+.|||.+|.+-..-|..+.+. .++..-+..-.++|+|.+.|
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 777775555677777777777777777776666655555 55555555667788887654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-38 Score=331.43 Aligned_cols=363 Identities=26% Similarity=0.291 Sum_probs=225.5
Q ss_pred cEEEccCCcccCcCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccC
Q 001497 505 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 584 (1066)
Q Consensus 505 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 584 (1066)
+.|++++|.+....+..|.++++|+.+++.+|.++ .||..... ..+++.|+|.+|.|+.+..+.+..++.|+.||||.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 44666666665555555566666666666666666 56654433 45577777777777666666666667777777777
Q ss_pred ccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCC
Q 001497 585 NKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 664 (1066)
Q Consensus 585 n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 664 (1066)
|.|+ ++|...|..-.++++|+|+.|.|+......|..+.+|..|.|+.|+++...+..|.+++.|+.|+|..|+|.-.-
T Consensus 159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 7776 666665555566777777777777666666777777777777777777555556666777777777777765222
Q ss_pred CccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCC
Q 001497 665 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 744 (1066)
Q Consensus 665 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 744 (1066)
-..|..+++|+.|.|..|.+.......|..+.++++|+|+.|++.. +..+++.+++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------------------vn~g~lfgLt 293 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------------------------VNEGWLFGLT 293 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------------------------hhcccccccc
Confidence 3456667777777777777766666677777777777777777652 2333555556
Q ss_pred CccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCC
Q 001497 745 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 824 (1066)
Q Consensus 745 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~ 824 (1066)
+|+.|+||+|.|..+-++....+++|++|+|+.|+|+...++.|..+..|+.|+|++|+++......|..
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~---------- 363 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG---------- 363 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH----------
Confidence 6666666666665555555555566666666666666555555666666666666666555433333322
Q ss_pred CCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCc---CCCCCCCCCEEECc
Q 001497 825 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP---QIGNLTRIQTLNLS 901 (1066)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls 901 (1066)
+.+|+.|||++|.+++.|.+ .|..++.|+.|+|.
T Consensus 364 -------------------------------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 364 -------------------------------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred -------------------------------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 22555666666666555443 25556666666666
Q ss_pred CccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEc
Q 001497 902 HNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 948 (1066)
Q Consensus 902 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~l 948 (1066)
+|++..+...+|.++.+||.|||.+|.|..+-|.+|..+ .|+.|-+
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 666664444566666666666666666666666666665 5555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2e-39 Score=327.21 Aligned_cols=477 Identities=26% Similarity=0.375 Sum_probs=272.0
Q ss_pred CCCCcEEECCCCccccccchhccCCCCCcEEecccCcCcCCCCCccccCCCCCCEEEcccCcccccCCcccccCCCCccE
Q 001497 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 430 (1066)
Q Consensus 351 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 430 (1066)
-..++.+.+++|.+.. +.+.+.++..|++|++++|+++ ++ |++++.+..++.+++++|++. .+
T Consensus 44 qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls-~l------------- 106 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS-EL------------- 106 (565)
T ss_pred hcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-hc-------------
Confidence 3457778888888773 4445778888888888888887 56 667788888888888888765 22
Q ss_pred EecCCCcccccccccCCCCCcccceEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEcc
Q 001497 431 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 510 (1066)
Q Consensus 431 l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~ 510 (1066)
|+.+.+..++..++.++|++.. +|+. ++.+..++.++..
T Consensus 107 ---------------------------------------p~~i~s~~~l~~l~~s~n~~~e-l~~~-i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 107 ---------------------------------------PEQIGSLISLVKLDCSSNELKE-LPDS-IGRLLDLEDLDAT 145 (565)
T ss_pred ---------------------------------------cHHHhhhhhhhhhhccccceee-cCch-HHHHhhhhhhhcc
Confidence 2222222333333333333332 2222 3455566666666
Q ss_pred CCcccCcCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccc
Q 001497 511 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590 (1066)
Q Consensus 511 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 590 (1066)
+|++.. .|..+..+.++..+++.+|++. ..|.+... ++.|+++|...|.++ .+|..++++.+|..|++..|++. .
T Consensus 146 ~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 146 NNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 666653 3444556666666666666666 45544444 566666666666665 55666666666666666666666 6
Q ss_pred cChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccC
Q 001497 591 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN 670 (1066)
Q Consensus 591 ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 670 (1066)
+|+ |.+|..|++++++.|++.-...+....++++.+||+.+|++. ..|+.+.-+.+|++||+++|.++ ..|..+++
T Consensus 221 lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 221 LPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred CCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 662 235666666666666666443344446666666666666665 55666666666666666666665 45556666
Q ss_pred CCCCcEEEccCCcccCCCCccccC-----CCCCCE----EEccCC---------cccccCCCCCCCCcccEEEcCCCccc
Q 001497 671 LKGLQHIVMPKNHLEGPIPVEFCR-----LDSLQI----LDISDN---------NISGSLPSCFYPLSIKQVHLSKNMLH 732 (1066)
Q Consensus 671 l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~----L~l~~n---------~~~~~~p~~~~~~~L~~L~l~~n~~~ 732 (1066)
+ .|+.|.+.+|.+..+--+-+.+ ++.|+. =.++.- ...+..|+.....+.+.|+++.-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 6 6666666666553210000000 000000 000000 00111122222234555555555554
Q ss_pred cccCcccccCCC--CccEEEccCcccccccchhhhCCCCCCE-EeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCC
Q 001497 733 GQLKEGTFFNCS--SLVTLDLSYNYLNGSIPDWIDGLSQLSH-LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 809 (1066)
Q Consensus 733 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 809 (1066)
.+|...|.... -.+..+++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|+|++|.+.. +|
T Consensus 376 -~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~-LP 451 (565)
T KOG0472|consen 376 -LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLND-LP 451 (565)
T ss_pred -cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhhh-cc
Confidence 44543343322 2555666666666 55555555544433 33343433 3666666666777777776666542 33
Q ss_pred ccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCC
Q 001497 810 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 889 (1066)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 889 (1066)
..++. +..|+.||+|.|+|. .+|..+
T Consensus 452 ~e~~~-----------------------------------------------------lv~Lq~LnlS~NrFr-~lP~~~ 477 (565)
T KOG0472|consen 452 EEMGS-----------------------------------------------------LVRLQTLNLSFNRFR-MLPECL 477 (565)
T ss_pred hhhhh-----------------------------------------------------hhhhheecccccccc-cchHHH
Confidence 33322 124666777777666 566666
Q ss_pred CCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCccc
Q 001497 890 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954 (1066)
Q Consensus 890 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~ 954 (1066)
-.+..++.+-.++|++....|+.+.+|.+|..|||.+|.|. .||..++++++|+.|++++|++.
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 66666666666666666555555677777777777777766 66667777777777777777766
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.5e-38 Score=319.27 Aligned_cols=437 Identities=25% Similarity=0.334 Sum_probs=261.5
Q ss_pred CcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccCcCCCCCCCCCCccEEEccCCcccccCChhhhhc
Q 001497 470 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 549 (1066)
Q Consensus 470 ~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~ 549 (1066)
|+.++....++.++.++|++. .+|+.+ ....++..++.+.|.+.. .+..++.+..+..++..+|+++ ..|.+++.
T Consensus 84 p~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~- 158 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVN- 158 (565)
T ss_pred CHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHH-
Confidence 444444455566666666654 455542 345556666666666553 2334455555666666666665 55555554
Q ss_pred CCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeE
Q 001497 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 629 (1066)
Q Consensus 550 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 629 (1066)
+.++..+++.+|+++...|+.+. ++.|+++|...|-+. .+|..++ ++.+|+.|++.+|++. ..| .|.++..|++|
T Consensus 159 ~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~El 233 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKEL 233 (565)
T ss_pred HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHH
Confidence 45566666666666533333333 666666666666554 5666553 4566666666666655 233 55566666666
Q ss_pred eccCccccccCCCCCC-CCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcc
Q 001497 630 LLEGNHFVGEIPQSLS-KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 708 (1066)
Q Consensus 630 ~L~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 708 (1066)
+++.|++. .+|.... +++++.+||+.+|++. +.|..+.-+.+|++||+++|.++ ..|..++++ .|+.|-+.+|++
T Consensus 234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 66666655 3444333 5566666666666665 55555556666666666666665 344455555 566666666655
Q ss_pred cccCCCCCCC---CcccEEE-------cCCCcc----ccccCccc---ccCCCCccEEEccCcccccccchhhhCC--CC
Q 001497 709 SGSLPSCFYP---LSIKQVH-------LSKNML----HGQLKEGT---FFNCSSLVTLDLSYNYLNGSIPDWIDGL--SQ 769 (1066)
Q Consensus 709 ~~~~p~~~~~---~~L~~L~-------l~~n~~----~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~p~~~~~l--~~ 769 (1066)
...-.+.... .-+++|+ ++...- .+..+... .....+.+.|++++-+++....+.|..- .-
T Consensus 310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI 389 (565)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc
Confidence 4211111100 0011110 000000 00011111 1223455566666666663322233221 12
Q ss_pred CCEEeCcCCcccccCChhhhcCCCCCEE-ECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001497 770 LSHLNLAHNNLEGEVPIQLCRLNQLQLL-DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 848 (1066)
Q Consensus 770 L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (1066)
.+.+++++|++. .+|..+..+..+.+. ++++|.+ +.+|..+.
T Consensus 390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~----------------------------------- 432 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELS----------------------------------- 432 (565)
T ss_pred eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHH-----------------------------------
Confidence 556666666666 556555555544432 3333332 23332222
Q ss_pred hhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCc
Q 001497 849 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 928 (1066)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 928 (1066)
.++.++.|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+-.+..+|.+-.++|+
T Consensus 433 ------------------~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 433 ------------------QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred ------------------hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 2558999999999998 89999999999999999999999 899999888899999999999
Q ss_pred CccccCccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCC
Q 001497 929 LSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFL 978 (1066)
Q Consensus 929 l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~l 978 (1066)
+....|+.+.++..|..||+.+|.+....|. .+..+++....+.|||+-
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence 9977777899999999999999999966666 889999999999999985
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.3e-33 Score=294.30 Aligned_cols=393 Identities=27% Similarity=0.371 Sum_probs=245.1
Q ss_pred ceEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccCcCCCCCCCCCCccEEEc
Q 001497 454 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 533 (1066)
Q Consensus 454 L~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 533 (1066)
.+-.++++|....+.+|+.+..+++++.|.+...++. .+|+. ++.+.+|++|.+.+|++.. +...+..++.|+.+++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhh
Confidence 3445555665556678888888888888888776653 67777 4678888888888888763 2345567777777777
Q ss_pred cCCcccc-cCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccc
Q 001497 534 SNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 612 (1066)
Q Consensus 534 s~n~l~~-~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l 612 (1066)
..|++.. -||.++|. +..|+.||||+|+++ ..|..+..-+++-+|+||+|+|. .||..+|.+++.|-+||||+|.+
T Consensus 86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 7777642 36777776 777777777777777 56667777777777777777776 77777777777777777777777
Q ss_pred cccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCC-CCCCccccCCCCCcEEEccCCcccCCCCcc
Q 001497 613 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 691 (1066)
Q Consensus 613 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 691 (1066)
. .+|+.+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..|++
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 6 34555566666666666666654332233344455555555554322 234444444444444444444443 34444
Q ss_pred ccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCC
Q 001497 692 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 771 (1066)
Q Consensus 692 ~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 771 (1066)
+..+++|+.|+||+| +|+ .+.-..+.-.+|+
T Consensus 241 ly~l~~LrrLNLS~N------------------------------------------------~it-eL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGN------------------------------------------------KIT-ELNMTEGEWENLE 271 (1255)
T ss_pred HhhhhhhheeccCcC------------------------------------------------cee-eeeccHHHHhhhh
Confidence 444444444444444 444 1222222233455
Q ss_pred EEeCcCCcccccCChhhhcCCCCCEEECcCCcCcc-cCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhh
Q 001497 772 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 850 (1066)
Q Consensus 772 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (1066)
+|+++.|+++ .+|.+++.++.|+.|.+.+|+++- -+|+.++.+
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL----------------------------------- 315 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL----------------------------------- 315 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh-----------------------------------
Confidence 5555555555 455555555555555555555431 133333332
Q ss_pred hhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCc
Q 001497 851 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 930 (1066)
Q Consensus 851 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 930 (1066)
..|..+..++|++. .+|+.++.+..|+.|+|++|++. ..|+++.-++.|+.|||..|.=-
T Consensus 316 ------------------~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 ------------------IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ------------------hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 25566667777776 78999999999999999999988 78999999999999999999644
Q ss_pred cccCccccCCCCCCEEEcccC-----cccccCCC
Q 001497 931 GKIPRQLVDLNTLAIFIVAYN-----NLSGKIPE 959 (1066)
Q Consensus 931 ~~ip~~l~~l~~L~~l~ls~N-----~l~g~ip~ 959 (1066)
-..|.-=..-+.|+.-|+.+- +|.|..|.
T Consensus 376 VMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 376 VMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred cCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence 233322222256666555442 35665554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.1e-33 Score=311.84 Aligned_cols=486 Identities=27% Similarity=0.322 Sum_probs=300.2
Q ss_pred CCcEEECCCCccccccchhccCCCCCcEEecccCcCcCCCCCccccCCCCCCEEEcccCcccccCCcccccCCCCccEEe
Q 001497 353 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 432 (1066)
Q Consensus 353 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~ 432 (1066)
.++.|+++.|-+....-+...+.-+|+.||+++|.+. .. |..+..+.+|+.|+++.|.+. ..| ....++.+|+++.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLN 97 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cC-CchhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhhe
Confidence 3777777777665433344455566888888888776 55 667777778888888888776 333 3456677777777
Q ss_pred cCCCcccccccccCCCCCcccceEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCC
Q 001497 433 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 512 (1066)
Q Consensus 433 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n 512 (1066)
+.+|.+.. .|..+..+.+|+.++++.|.+. .+|.. ...++.++.+..++|
T Consensus 98 L~~n~l~~----------------------------lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 98 LKNNRLQS----------------------------LPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred eccchhhc----------------------------CchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcc
Confidence 77776542 3444555556666666666653 44543 345666666777776
Q ss_pred cccCcCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccC
Q 001497 513 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP 592 (1066)
Q Consensus 513 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 592 (1066)
...... +. ..++.+++..|.+.+.++.++.. +.. .|+|++|.+. -..+..+.+|+.+....|+++ .+.
T Consensus 148 ~~~~~l----g~-~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~ 215 (1081)
T KOG0618|consen 148 EKIQRL----GQ-TSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE 215 (1081)
T ss_pred hhhhhh----cc-ccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE
Confidence 222111 11 12667777777777777766543 333 5888888776 234556777888888888776 333
Q ss_pred hhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCC
Q 001497 593 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 672 (1066)
Q Consensus 593 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 672 (1066)
. ..++|+.|+.++|.+....+. ..-.+|+++++++|+++ .+|.+++.+.+|+.+...+|.++ .+|..+...+
T Consensus 216 ~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~ 287 (1081)
T KOG0618|consen 216 I----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRIT 287 (1081)
T ss_pred e----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhh
Confidence 2 346788888888887733221 23356788888888877 45677888888888888888885 6777777778
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCC---CcccEEEcCCCccccccCcccccCCCCccEE
Q 001497 673 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP---LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 749 (1066)
Q Consensus 673 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 749 (1066)
+|+.|.+..|.+. -+|....+.++|+.|++..|++. ..|+.+.. .++..+..+.|++. ..|...=...+.|+.|
T Consensus 288 ~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 288 SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQEL 364 (1081)
T ss_pred hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHH
Confidence 8888888888876 45556667788888888888876 34443221 24555555555554 2222122234566667
Q ss_pred EccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCC
Q 001497 750 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 829 (1066)
Q Consensus 750 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~ 829 (1066)
.+.+|.++...-..+.+.++|+.|+|++|++.......+.++..|+.|+||+|+++.. |.+..++.
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~------------- 430 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLG------------- 430 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhh-------------
Confidence 7777777665555566666777777777776644444556666677777777766633 34333322
Q ss_pred CCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCcccc
Q 001497 830 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 909 (1066)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 909 (1066)
.|++|...+|++. ..| ++..++.|+++|+|.|+++...
T Consensus 431 ----------------------------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 431 ----------------------------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ----------------------------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence 5566666666666 455 5666667777777777666332
Q ss_pred chhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccC
Q 001497 910 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 951 (1066)
Q Consensus 910 p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N 951 (1066)
-..-...++|++|||++|.=.-..-..|..+..+..+++.-|
T Consensus 469 l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 222222256667777666522233344445555555555555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.4e-32 Score=289.97 Aligned_cols=369 Identities=27% Similarity=0.371 Sum_probs=201.0
Q ss_pred CCCccEEEccCCccc-ccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCC
Q 001497 525 HKRLRFLDVSNNNFQ-GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 603 (1066)
Q Consensus 525 ~~~L~~L~ls~n~l~-~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~ 603 (1066)
++-.+-+|+++|.++ +.+|.++-+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence 344555666777766 356665554 666666666666665 55666666666666666666665 443333 2456666
Q ss_pred EEEccCccccc-cccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCC
Q 001497 604 FLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 682 (1066)
Q Consensus 604 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 682 (1066)
.+++.+|++.. -+|..+..+..|..|||++|++. ..|..+....++-+|+|++|+|.......|.+++.|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 66666666542 24555556666666666666665 45656666666666666666665222234455666666666666
Q ss_pred cccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccc-cccc
Q 001497 683 HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-GSIP 761 (1066)
Q Consensus 683 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p 761 (1066)
++. .+|+.+..+..|+.|+|++|++...- -..+..+++|++|.+++.+-+ ..+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ------------------------LrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ------------------------LRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHH------------------------HhcCccchhhhhhhcccccchhhcCC
Confidence 665 44445556666666666666553110 002223444555555543322 2345
Q ss_pred hhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCC
Q 001497 762 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 841 (1066)
Q Consensus 762 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1066)
..+..+.+|..+|++.|.+. .+|+.+..+++|+.|+||+|+|+..-- +.+.
T Consensus 216 tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~--------------------------- 266 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGE--------------------------- 266 (1255)
T ss_pred CchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHH---------------------------
Confidence 55555555555666655555 555555555666666666655542210 0000
Q ss_pred CchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCc-cccchhccCCCCCC
Q 001497 842 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRHIE 920 (1066)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~ 920 (1066)
-..+.+|+||.|+++ ..|..+..++.|+.|.+.+|+++ .-||+.++++.+|+
T Consensus 267 --------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 267 --------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred --------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 013455555555555 45555555555555555555544 23455555555555
Q ss_pred EEeCCCCcCccccCccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCCCCC
Q 001497 921 SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGL 981 (1066)
Q Consensus 921 ~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~ 981 (1066)
.+..++|++. ..|.+++.+..|+.|.|++|+|- ..|+...-+..++..++..||.+--+
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCC
Confidence 5555555555 55555555555555555555554 23433334444555555555555443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=5.9e-31 Score=293.76 Aligned_cols=474 Identities=27% Similarity=0.329 Sum_probs=359.8
Q ss_pred cCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccCcCCCCCCCCCCccEEEccCCcccccCChhhhh
Q 001497 469 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 548 (1066)
Q Consensus 469 ~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~ 548 (1066)
+|..+..-..++.+.+..|-+... |-.+...+-+|+.|++++|.+. .+|.++..+.+|+.|+++.|.+. ..|.....
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~ 89 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN 89 (1081)
T ss_pred cchhhccHHHHHhhhccccccccC-chHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence 344333333466777777765542 3444455666999999988875 56778888899999999999997 78876665
Q ss_pred cCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCe
Q 001497 549 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 628 (1066)
Q Consensus 549 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 628 (1066)
+.+|+++.|.+|.+. ..|..+..+++|++|+++.|.+. .+|..+. .++.++.+..++|......+. .. .+.
T Consensus 90 -~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~lg~----~~-ik~ 160 (1081)
T KOG0618|consen 90 -MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQRLGQ----TS-IKK 160 (1081)
T ss_pred -hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhhhcc----cc-chh
Confidence 889999999999988 78999999999999999999997 8998885 688899999999932222222 22 888
Q ss_pred EeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcc
Q 001497 629 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 708 (1066)
Q Consensus 629 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 708 (1066)
+++..|.+.+.++..+..++. .|++++|.+. -..+.++.+|+.|....|++.... -.-++|+.|+.++|.+
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l 231 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPL 231 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcc
Confidence 999999998888888877766 7999999886 344678889999999999886322 2357899999999999
Q ss_pred cccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhh
Q 001497 709 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 788 (1066)
Q Consensus 709 ~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 788 (1066)
+ ..-..+.+.++++++++.|+++ .+|. ++..|.+|+.++..+|.++ .+|..+...++|+.|+...|.+. .+|...
T Consensus 232 ~-~~~~~p~p~nl~~~dis~n~l~-~lp~-wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l 306 (1081)
T KOG0618|consen 232 T-TLDVHPVPLNLQYLDISHNNLS-NLPE-WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL 306 (1081)
T ss_pred e-eeccccccccceeeecchhhhh-cchH-HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc
Confidence 8 5556677889999999999997 5774 9999999999999999996 78888888999999999999998 677788
Q ss_pred hcCCCCCEEECcCCcCcccCCccccCCcc-ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhcccccc--cccc
Q 001497 789 CRLNQLQLLDLSDNNLHGLIPSCFDNTTL-HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY--AYQG 865 (1066)
Q Consensus 789 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 865 (1066)
..+++|+.|||..|++...++..|.-... ....+...+...... ..+.......+.+..+.+.... ....
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-------~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-------SYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-------cccchhhHHHHHHHHhcCcccccchhhh
Confidence 88999999999999998766644433221 111111111000000 0111112234444444443332 1222
Q ss_pred ccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCE
Q 001497 866 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 945 (1066)
Q Consensus 866 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 945 (1066)
.....|+.|+|++|+|.......+.++..|+.|+||+|+++ .+|.++.++..|++|...+|+|. ..| .+..++.|+.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 34668999999999998544455889999999999999999 78899999999999999999998 677 8899999999
Q ss_pred EEcccCccccc-CCCCccccCccCccccCCCCCCC
Q 001497 946 FIVAYNNLSGK-IPEWTAQFATFNKSSYDGNPFLC 979 (1066)
Q Consensus 946 l~ls~N~l~g~-ip~~~~~~~~~~~~~~~gN~~lc 979 (1066)
+|+|.|+|+-. +|. .....+++..++.||+++-
T Consensus 457 lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred Eecccchhhhhhhhh-hCCCcccceeeccCCcccc
Confidence 99999999754 444 3333678888999999754
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=2.7e-27 Score=239.76 Aligned_cols=284 Identities=21% Similarity=0.185 Sum_probs=191.0
Q ss_pred CCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccC-ccCccccChhhhh
Q 001497 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN-NKLTGEIPDHLAM 597 (1066)
Q Consensus 519 ~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~ip~~~~~ 597 (1066)
..|-.-.+....++|..|+++ .||...|+.+++|+.||||+|+|+.+.|++|.+++++..|-+.+ |+|+ .+|...|.
T Consensus 60 eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFG 137 (498)
T ss_pred cCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhh
Confidence 333334566778899999998 89999998899999999999999999999999999888877766 8998 89999999
Q ss_pred cCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEE
Q 001497 598 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI 677 (1066)
Q Consensus 598 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 677 (1066)
++.+++.|.+.-|++.....+.|..+++|..|.+.+|.+..+-..+|..+.+++.+.+..|.+-. ..+++.+...
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~ 212 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADD 212 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhH
Confidence 99999999999999998888999999999999999999885555588888999999888887421 1222222211
Q ss_pred EccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCC--cccEEEcCCCccccccCcccccCCCCccEEEccCcc
Q 001497 678 VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 755 (1066)
Q Consensus 678 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~ 755 (1066)
....|..+++.+...-..+.+.++...-+..|... ++..-..+.+...+..|...|..+++|+.|+|++|+
T Consensus 213 -------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 213 -------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred -------HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 01122233333333334444444443333333222 221112222333344455556666666666666666
Q ss_pred cccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCc
Q 001497 756 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816 (1066)
Q Consensus 756 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 816 (1066)
++++-+.||.+...+++|.|..|++.......|.++..|++|+|.+|+|+...|..|....
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 6666666666666666666666666655555666666666666666666666666665544
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=2.5e-27 Score=240.04 Aligned_cols=398 Identities=22% Similarity=0.271 Sum_probs=253.5
Q ss_pred EEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccC
Q 001497 530 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609 (1066)
Q Consensus 530 ~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~ 609 (1066)
..+.++-.++ ++|.++ .+.-+.++|..|+|+.+.|.+|+.+++|+.|||++|.|+ .|....|.++.+|..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence 4566666677 788775 468889999999999999999999999999999999998 78777788999988777766
Q ss_pred -ccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCC
Q 001497 610 -NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 688 (1066)
Q Consensus 610 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 688 (1066)
|+|+......|.++..|+-|.+.-|++.....+.|..+++|..|.+.+|.+....-..|..+.+++.+.+..|.+.
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i--- 201 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI--- 201 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc---
Confidence 8999888889999999999999999999888889999999999999999997444448888899999988887653
Q ss_pred CccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCC-CCccEEEccCcccccccc-hhhhC
Q 001497 689 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYNYLNGSIP-DWIDG 766 (1066)
Q Consensus 689 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p-~~~~~ 766 (1066)
..++++.+.. ++..|.+.........+..+ .+.++. +++...|.-. .++..=-.+.+...+.-| ..|..
T Consensus 202 --cdCnL~wla~-~~a~~~ietsgarc~~p~rl-----~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 202 --CDCNLPWLAD-DLAMNPIETSGARCVSPYRL-----YYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred --cccccchhhh-HHhhchhhcccceecchHHH-----HHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 3455554443 22223322111111111112 222221 2332233222 122211222333333444 57999
Q ss_pred CCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCC-----CCCCCccccccC---
Q 001497 767 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-----PDKPFKTSFSIS--- 838 (1066)
Q Consensus 767 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--- 838 (1066)
+++|++|+|++|+++++-+.+|.+...++.|.|..|++.......|.++.-+......++ ....|...++..
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 999999999999999999999999999999999999999887777877654333222111 001111100000
Q ss_pred --CCCCchhhhhhhhhhhh-ccccccccccccccccceEEcc-------------------------------------C
Q 001497 839 --GPQGSVEKKILEIFEFT-TKNIAYAYQGRVLSLLAGLDLS-------------------------------------C 878 (1066)
Q Consensus 839 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls-------------------------------------~ 878 (1066)
..+........=..++. .+.......-.....++.++++ +
T Consensus 353 l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn 432 (498)
T KOG4237|consen 353 LLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN 432 (498)
T ss_pred hccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence 00000000000000000 0000000000111122333333 2
Q ss_pred CcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccC
Q 001497 879 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 951 (1066)
Q Consensus 879 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N 951 (1066)
+.+. .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus 433 k~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 2222 3333332 24567888888888 67766 56777 8899999888766778888888888888887
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.8e-22 Score=253.33 Aligned_cols=339 Identities=22% Similarity=0.268 Sum_probs=194.1
Q ss_pred CCCCCCCccEEEccCCc------ccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChh
Q 001497 521 PIHSHKRLRFLDVSNNN------FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 594 (1066)
Q Consensus 521 ~~~~~~~L~~L~ls~n~------l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~ 594 (1066)
+|..+++|+.|.+..+. +...+|..+....++|+.|++.++.+. .+|..| ...+|+.|++++|++. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 35566677777665442 222345544442345677777666665 445555 3566677777776665 55555
Q ss_pred hhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCC
Q 001497 595 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL 674 (1066)
Q Consensus 595 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 674 (1066)
. ..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus 630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 4 356667777776655433444 35566667777776666555666666666677777776665444555544 56666
Q ss_pred cEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccc---c---ccCcccccCCCCccE
Q 001497 675 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH---G---QLKEGTFFNCSSLVT 748 (1066)
Q Consensus 675 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~~ 748 (1066)
+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+...+|+.|.+.++... + .++...+..+++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 66666666544444432 345666666666654 4454444455555555543211 0 011112223456666
Q ss_pred EEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCC
Q 001497 749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 828 (1066)
Q Consensus 749 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 828 (1066)
|++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------- 844 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------- 844 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence 6666666555666666666666666666654444555444 5666666666665433222211
Q ss_pred CCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCc-cCcc
Q 001497 829 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN-NLTG 907 (1066)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~ 907 (1066)
.++++.|+|++|.++ .+|..++.+++|+.|+|++| +++
T Consensus 845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~- 883 (1153)
T PLN03210 845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ- 883 (1153)
T ss_pred ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-
Confidence 124666777777766 56666677777777777663 344
Q ss_pred ccchhccCCCCCCEEeCCCCc
Q 001497 908 TIPLTFSNLRHIESLDLSYNK 928 (1066)
Q Consensus 908 ~~p~~~~~l~~L~~L~Ls~N~ 928 (1066)
.+|..+..+++|+.++++++.
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCcccccccCCCeeecCCCc
Confidence 456666666777777776663
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.3e-22 Score=255.25 Aligned_cols=340 Identities=22% Similarity=0.278 Sum_probs=235.5
Q ss_pred CChhhhhcCCCCcEEEccCCc------ccccCCccccCc-ccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccc
Q 001497 542 IPVEIGDILPSLVYFNISMNA------LDGSIPSSFGNV-IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 614 (1066)
Q Consensus 542 ip~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l-~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~ 614 (1066)
+....+..+++|+.|.+..+. +...+|..|..+ .+|+.|++.++.+. .+|..+ ...+|+.|++++|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 334445557788888776543 233456666555 35888888888876 777765 4678888888888776
Q ss_pred cccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccC
Q 001497 615 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 694 (1066)
Q Consensus 615 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 694 (1066)
.++..+..+++|+.|+|+++...+.+|. ++.+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ +
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 4566677788888888887765556663 6777888888888877666778888888888888888776555666554 6
Q ss_pred CCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccc-------cccchhhhCC
Q 001497 695 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-------GSIPDWIDGL 767 (1066)
Q Consensus 695 l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~~~~l 767 (1066)
+++|+.|++++|...+.+|.. ..+++.|++++|.+. .+|. .+ .+++|+.|++.++... ...|..+...
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhcc
Confidence 778888888888766666643 347788888888764 4554 22 5677777777764321 1222233345
Q ss_pred CCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhh
Q 001497 768 SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 847 (1066)
Q Consensus 768 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (1066)
++|+.|++++|...+.+|..++++++|+.|++++|+.-+.+|... +
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--------------------------------- 823 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--------------------------------- 823 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C---------------------------------
Confidence 678888888887777788888888888888888776444444332 1
Q ss_pred hhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCC-
Q 001497 848 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY- 926 (1066)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~- 926 (1066)
++.|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|+.|+|++
T Consensus 824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 336778888877655555543 356778888888887 6777888888888888887
Q ss_pred CcCccccCccccCCCCCCEEEcccC
Q 001497 927 NKLSGKIPRQLVDLNTLAIFIVAYN 951 (1066)
Q Consensus 927 N~l~~~ip~~l~~l~~L~~l~ls~N 951 (1066)
|++. .+|..+..++.|+.++++++
T Consensus 880 ~~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 880 NNLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCcC-ccCcccccccCCCeeecCCC
Confidence 4555 47777777888888887776
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.4e-21 Score=228.21 Aligned_cols=266 Identities=27% Similarity=0.326 Sum_probs=138.8
Q ss_pred CCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEec
Q 001497 552 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 631 (1066)
Q Consensus 552 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 631 (1066)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|.. .++|++|++++|+++.. |. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 4556777777777 4565554 36777777777776 56642 35666666666666632 32 1245555566
Q ss_pred cCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCccccc
Q 001497 632 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 711 (1066)
Q Consensus 632 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 711 (1066)
++|.+. .+|..+ ++|+.|++++|+++ .+|.. .++|+.|++++|++++. |.. ..+|+.|++++|.++
T Consensus 270 s~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-- 335 (788)
T PRK15387 270 FSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-- 335 (788)
T ss_pred cCCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCC---cccccccccccCccc--
Confidence 655554 233211 34555555555554 23321 23444444444444431 211 112333334444333
Q ss_pred CCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcC
Q 001497 712 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 791 (1066)
Q Consensus 712 ~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 791 (1066)
.+|. + ..+|+.|+|++|++++ +|.. .++|+.|++++|.+++ +|.. .
T Consensus 336 ----------------------~LP~--l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 336 ----------------------SLPT--L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred ----------------------cccc--c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence 1222 0 1356666666666663 3332 2345566666666663 4432 2
Q ss_pred CCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhcccccccccccccccc
Q 001497 792 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 871 (1066)
Q Consensus 792 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 871 (1066)
.+|+.|++++|++++. |.. .+.|
T Consensus 382 ~~L~~LdLs~N~Lt~L-P~l--------------------------------------------------------~s~L 404 (788)
T PRK15387 382 SGLKELIVSGNRLTSL-PVL--------------------------------------------------------PSEL 404 (788)
T ss_pred cccceEEecCCcccCC-CCc--------------------------------------------------------ccCC
Confidence 3566666666666532 211 0145
Q ss_pred ceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccC
Q 001497 872 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 939 (1066)
Q Consensus 872 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~ 939 (1066)
+.|++++|+|++ +|... .+|+.|+|++|+|+ .+|..|.++++|+.|+|++|+|+|.+|..+..
T Consensus 405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 566666666663 45432 34556666666666 55666666666666666666666666655533
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=7.1e-21 Score=222.31 Aligned_cols=268 Identities=26% Similarity=0.332 Sum_probs=205.1
Q ss_pred CCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEE
Q 001497 526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 605 (1066)
Q Consensus 526 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L 605 (1066)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|.. .++|++|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----cccccee
Confidence 34568999999998 7998764 589999999999994 5643 578999999999999 78753 4789999
Q ss_pred EccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCccc
Q 001497 606 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685 (1066)
Q Consensus 606 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 685 (1066)
++++|.++. +|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|... .+|+.|++++|+++
T Consensus 268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccc
Confidence 999999985 3432 357899999999998 45543 4789999999999984 55432 46888999999998
Q ss_pred CCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhh
Q 001497 686 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 765 (1066)
Q Consensus 686 ~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 765 (1066)
+ +|.. ..+|+.|++++|++++ +|. . .++|+.|++++|++++ +|..
T Consensus 336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~------------------------l---p~~L~~L~Ls~N~L~~-LP~l-- 380 (788)
T PRK15387 336 S-LPTL---PSGLQELSVSDNQLAS-LPT------------------------L---PSELYKLWAYNNRLTS-LPAL-- 380 (788)
T ss_pred c-cccc---ccccceEecCCCccCC-CCC------------------------C---Ccccceehhhcccccc-Cccc--
Confidence 5 4532 2578899999998873 332 1 1345666777777763 4543
Q ss_pred CCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchh
Q 001497 766 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVE 845 (1066)
Q Consensus 766 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1066)
..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|..+
T Consensus 381 -~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~--------------------------------- 421 (788)
T PRK15387 381 -PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP--------------------------------- 421 (788)
T ss_pred -ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---------------------------------
Confidence 2467888888888874 4433 3578899999999885 34321
Q ss_pred hhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCC
Q 001497 846 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 916 (1066)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 916 (1066)
..|+.|++++|+|+ .+|..|++++.|+.|+|++|.|+|.+|..+..+
T Consensus 422 -----------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 422 -----------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -----------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 14677999999998 789999999999999999999999999887554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=5.1e-19 Score=208.71 Aligned_cols=118 Identities=25% Similarity=0.366 Sum_probs=64.5
Q ss_pred CCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEec
Q 001497 552 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 631 (1066)
Q Consensus 552 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 631 (1066)
+...|+++++.++ .+|..+. +.++.|++++|+++ .+|..++ .+|+.|++++|.++. +|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence 5667777777777 3455442 46777777777777 6776553 467777777777663 333222 24555555
Q ss_pred cCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCccc
Q 001497 632 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685 (1066)
Q Consensus 632 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 685 (1066)
++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 555554 3343332 24555555555554 2333322 23444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=6.2e-19 Score=208.05 Aligned_cols=158 Identities=24% Similarity=0.362 Sum_probs=79.5
Q ss_pred cEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEcc
Q 001497 529 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 608 (1066)
Q Consensus 529 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~ 608 (1066)
..|+++++.++ .+|..+ .+.++.|++++|.++ .+|..+. .+|+.|++++|+++ .+|..+. .+|+.|+++
T Consensus 181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls 249 (754)
T PRK15370 181 TELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELS 249 (754)
T ss_pred eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECc
Confidence 34455555544 344433 234555555555555 2333322 35555555555555 4554432 345556666
Q ss_pred CccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCC
Q 001497 609 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 688 (1066)
Q Consensus 609 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 688 (1066)
+|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence 65555 2333332 35666666666665 3454443 36777777777666 3443332 345666666666653 2
Q ss_pred CccccCCCCCCEEEccCCccc
Q 001497 689 PVEFCRLDSLQILDISDNNIS 709 (1066)
Q Consensus 689 ~~~~~~l~~L~~L~l~~n~~~ 709 (1066)
|..+ .++|+.|++++|.++
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALT 338 (754)
T ss_pred Cccc--cccceeccccCCccc
Confidence 3222 135555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=9e-19 Score=194.13 Aligned_cols=57 Identities=26% Similarity=0.224 Sum_probs=28.3
Q ss_pred EEccCccCccccChhhhhcCCCCCEEEccCcccccc----ccccccCCCCCCeEeccCccc
Q 001497 580 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH----IFSRIFSLRNLRWLLLEGNHF 636 (1066)
Q Consensus 580 L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 636 (1066)
|+|..+.+++.--...+..+..|++|+++++.++.. ++..+...+.+++++++++.+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~ 63 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET 63 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence 556666665332233334455566666666665432 233333444455555555444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.6e-18 Score=192.20 Aligned_cols=207 Identities=24% Similarity=0.263 Sum_probs=101.4
Q ss_pred EEEccCCccc-ccCCccccCcccCCEEEccCccCccc----cChhhhhcCCCCCEEEccCccccc------cccccccCC
Q 001497 555 YFNISMNALD-GSIPSSFGNVIFLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKG------HIFSRIFSL 623 (1066)
Q Consensus 555 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~----ip~~~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l 623 (1066)
.|+|..+.++ ...+..+..+..|++++++++.++.. ++..+ ...+++++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4567777776 33445556677788888888877532 33333 355668888888877652 112233334
Q ss_pred CCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCC---CcEEEccCCcccC----CCCccccCC-
Q 001497 624 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG---LQHIVMPKNHLEG----PIPVEFCRL- 695 (1066)
Q Consensus 624 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l- 695 (1066)
++|+.|++++|.+. +..+..+..+.. |++|++++|++.+ .+...+..+
T Consensus 81 ~~L~~L~l~~~~~~------------------------~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~ 136 (319)
T cd00116 81 CGLQELDLSDNALG------------------------PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136 (319)
T ss_pred CceeEEEccCCCCC------------------------hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCC
Confidence 44444444444433 222222222222 4444444443331 111122233
Q ss_pred CCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccc----cchhhhCCCCCC
Q 001497 696 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLS 771 (1066)
Q Consensus 696 ~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~ 771 (1066)
++|+.|++++|.+++.... .+.. .+..+++|+.|++++|.+++. ++..+..+++|+
T Consensus 137 ~~L~~L~L~~n~l~~~~~~-------------------~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~ 196 (319)
T cd00116 137 PALEKLVLGRNRLEGASCE-------------------ALAK-ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196 (319)
T ss_pred CCceEEEcCCCcCCchHHH-------------------HHHH-HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCC
Confidence 4455555555544421110 1111 344455566666666665531 223344445666
Q ss_pred EEeCcCCccccc----CChhhhcCCCCCEEECcCCcCcc
Q 001497 772 HLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLHG 806 (1066)
Q Consensus 772 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 806 (1066)
.|++++|.+++. ++..+..+++|++|++++|++++
T Consensus 197 ~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred EEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 666666665532 22334455666666666666553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=6.3e-18 Score=151.84 Aligned_cols=160 Identities=31% Similarity=0.490 Sum_probs=88.5
Q ss_pred CCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCcccccc
Q 001497 742 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 821 (1066)
Q Consensus 742 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 821 (1066)
++.+.+.|.||+|+++ .+|..++.+.+|+.|++.+|++. ..|..++.++.|+.|+++-|++. ..|..|+.+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~------ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF------ 101 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC------
Confidence 3344455555555555 33444555555555555555555 45555555555555555555554 334444432
Q ss_pred CCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccC-cCCcCCCCCCCCCEEEC
Q 001497 822 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNL 900 (1066)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L 900 (1066)
+.|..|||++|++.. ..|..|..++.|+.|+|
T Consensus 102 -----------------------------------------------p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 102 -----------------------------------------------PALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred -----------------------------------------------chhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 244555555555532 34555555666666666
Q ss_pred cCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcccccCCC
Q 001497 901 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 959 (1066)
Q Consensus 901 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 959 (1066)
++|.|. .+|..++++++|+.|.++.|.+- ..|..++.++.|+.|.+.+|+++-..|+
T Consensus 135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 666665 55555666666666666666655 5566666666666666666666655554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-17 Score=149.51 Aligned_cols=164 Identities=30% Similarity=0.495 Sum_probs=138.0
Q ss_pred CCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEE
Q 001497 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 797 (1066)
Q Consensus 718 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 797 (1066)
...++.|.+++|+++ .+|+ .++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 334444445555443 4555 6888999999999999998 77888999999999999999998 899999999999999
Q ss_pred ECcCCcCcc-cCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEc
Q 001497 798 DLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 876 (1066)
Q Consensus 798 ~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 876 (1066)
||..|++.. ..|.-|.. ++.|+.|+|
T Consensus 108 dltynnl~e~~lpgnff~-----------------------------------------------------m~tlralyl 134 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFY-----------------------------------------------------MTTLRALYL 134 (264)
T ss_pred hccccccccccCCcchhH-----------------------------------------------------HHHHHHHHh
Confidence 999999864 33444322 336888999
Q ss_pred cCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCC
Q 001497 877 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 941 (1066)
Q Consensus 877 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 941 (1066)
+.|.+. .+|+.++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++ .+|..++++.
T Consensus 135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 999998 88999999999999999999998 89999999999999999999999 8888877754
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=3.2e-15 Score=176.86 Aligned_cols=118 Identities=36% Similarity=0.632 Sum_probs=106.4
Q ss_pred ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcc
Q 001497 870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 949 (1066)
Q Consensus 870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls 949 (1066)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCccc-cCccCccccCCCCCCCCCCC-CCCC
Q 001497 950 YNNLSGKIPEWTAQ-FATFNKSSYDGNPFLCGLPL-PICR 987 (1066)
Q Consensus 950 ~N~l~g~ip~~~~~-~~~~~~~~~~gN~~lc~~~l-~~c~ 987 (1066)
+|+++|.+|..... +.......+.+|+++|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999975443 23445677899999999764 3563
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=3.1e-12 Score=151.60 Aligned_cols=114 Identities=32% Similarity=0.515 Sum_probs=100.8
Q ss_pred CCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccc
Q 001497 793 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 872 (1066)
Q Consensus 793 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 872 (1066)
.++.|+|++|.++|.+|..+..++ .|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence 367789999999988888776644 799
Q ss_pred eEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCC-CCCCEEEcccC
Q 001497 873 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYN 951 (1066)
Q Consensus 873 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~l~ls~N 951 (1066)
.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+ ..+..+++++|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998774 46778999999
Q ss_pred cccccCCC
Q 001497 952 NLSGKIPE 959 (1066)
Q Consensus 952 ~l~g~ip~ 959 (1066)
...+.+|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 75544443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=3.5e-13 Score=144.43 Aligned_cols=173 Identities=34% Similarity=0.496 Sum_probs=121.0
Q ss_pred ccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECc
Q 001497 721 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 800 (1066)
Q Consensus 721 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 800 (1066)
....+++.|++. ++|. .+..+-.|+.+.|..|.+. .+|..+.++..|+.|+|+.|+++ ..|..++.|+ |+.|-++
T Consensus 77 t~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 345566666664 5555 5556666666666666666 56666666666777777777766 5566666553 6666666
Q ss_pred CCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCc
Q 001497 801 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 880 (1066)
Q Consensus 801 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 880 (1066)
+|+++.. |..++. +..|..||.|.|.
T Consensus 152 NNkl~~l-p~~ig~-----------------------------------------------------~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 152 NNKLTSL-PEEIGL-----------------------------------------------------LPTLAHLDVSKNE 177 (722)
T ss_pred cCccccC-Cccccc-----------------------------------------------------chhHHHhhhhhhh
Confidence 6666533 322221 2367778888888
Q ss_pred ccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCccccc
Q 001497 881 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 956 (1066)
Q Consensus 881 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ 956 (1066)
+. .+|..++.+.+|+.|++..|++. ..|..+..|+ |..||+|.|+++ .||-.|..|+.|++|-|.+|.|..+
T Consensus 178 i~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 178 IQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 87 67778888888888888888888 5666666554 778888888888 8888888888888888888888754
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=1.2e-12 Score=140.54 Aligned_cols=194 Identities=28% Similarity=0.445 Sum_probs=131.9
Q ss_pred CCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcC
Q 001497 648 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 727 (1066)
Q Consensus 648 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~ 727 (1066)
.--...|++.|++. ++|..+..+..|+.+.+..|.+. .+|.+++++..|+.+|++.|+++ ..|..
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~------------ 139 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDG------------ 139 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChh------------
Confidence 34455677777776 67777777777777777777776 67777888888888888888776 22322
Q ss_pred CCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCccc
Q 001497 728 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 807 (1066)
Q Consensus 728 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 807 (1066)
+..| -|+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++...
T Consensus 140 ------------lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 140 ------------LCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred ------------hhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC
Confidence 2222 2455666666665 55666666666777777777766 5666777777777777777776644
Q ss_pred CCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCc
Q 001497 808 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 887 (1066)
Q Consensus 808 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 887 (1066)
+++ +..+ .|..||+|+|+++ .||-
T Consensus 205 p~E-l~~L------------------------------------------------------pLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 205 PEE-LCSL------------------------------------------------------PLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred CHH-HhCC------------------------------------------------------ceeeeecccCcee-ecch
Confidence 332 2222 3778899999998 7899
Q ss_pred CCCCCCCCCEEECcCccCccccchhccCC---CCCCEEeCCCCc
Q 001497 888 QIGNLTRIQTLNLSHNNLTGTIPLTFSNL---RHIESLDLSYNK 928 (1066)
Q Consensus 888 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~ 928 (1066)
.|..|+.|++|-|.+|.++ ..|..+.-. .=-++|+..-.+
T Consensus 229 ~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 9999999999999999998 677665432 234566666654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=6.4e-11 Score=134.92 Aligned_cols=198 Identities=35% Similarity=0.509 Sum_probs=118.4
Q ss_pred EEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCC-CCccEEEccCc
Q 001497 676 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYN 754 (1066)
Q Consensus 676 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n 754 (1066)
.+++..|.+...+ .....++.++.|++.+|.++.. +. ..... ++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i------------------------~~-~~~~~~~nL~~L~l~~N 150 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI------------------------PP-LIGLLKSNLKELDLSDN 150 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccC------------------------cc-ccccchhhccccccccc
Confidence 4666666553222 2333445666677777666632 22 22333 26666666666
Q ss_pred ccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccc
Q 001497 755 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS 834 (1066)
Q Consensus 755 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1066)
.+. .+|..++.+++|+.|++++|+++ .+|...+..+.|+.|++++|+++...+.. .
T Consensus 151 ~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~--------------------- 206 (394)
T COG4886 151 KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E--------------------- 206 (394)
T ss_pred chh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h---------------------
Confidence 666 44455666677777777777766 45555556667777777777766433211 0
Q ss_pred cccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhcc
Q 001497 835 FSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 914 (1066)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 914 (1066)
.+..|.++++++|++. .++..+..+..+..+.+++|++. ..|..++
T Consensus 207 --------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~ 252 (394)
T COG4886 207 --------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252 (394)
T ss_pred --------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence 0124666677777544 45556667777777777777766 3356666
Q ss_pred CCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcccccCCC
Q 001497 915 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 959 (1066)
Q Consensus 915 ~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 959 (1066)
.+++++.|++++|+++ .++. +..+..++.|++++|.++...|.
T Consensus 253 ~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 253 NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 7777777777777776 3333 66777777777777777666554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.4e-10 Score=132.22 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=14.3
Q ss_pred CCcEEEcccCcCCCCCCccccCCCCCcEEEccCCccc
Q 001497 649 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685 (1066)
Q Consensus 649 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 685 (1066)
+|+.|++++|.+. .+|..++.++.|+.|++++|++.
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh
Confidence 3444444444443 22333334444444444444443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.1e-11 Score=124.40 Aligned_cols=217 Identities=22% Similarity=0.252 Sum_probs=98.8
Q ss_pred CCCCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCcccccc----cCCCCCcEEECCCCcccCccccccccCCCC
Q 001497 19 RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS----KGLSKLKSLGLSGTGFKGTFDVREFDSFNN 94 (1066)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~ 94 (1066)
++++||...|.++........+....|+++|.|||++|-+...... ..+++|+.|+++.|.+........-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3555555555555443111012344555555556655555443222 445555555555555432211111123445
Q ss_pred cCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCccE
Q 001497 95 LEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174 (1066)
Q Consensus 95 L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 174 (1066)
|+.|.|++|+++...+. .-+..+++|..|++..|...........-+..|+.|||++|++.........+.++.|+.
T Consensus 199 lK~L~l~~CGls~k~V~---~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQ---WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hheEEeccCCCCHHHHH---HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 55555555555432111 122344555555555553222222222234455555555555442221123344455555
Q ss_pred EEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccccccCCCCCcEEec
Q 001497 175 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 254 (1066)
Q Consensus 175 L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L 254 (1066)
|.++.+.+..+..... +.......+++|+.|++..|.+... +....+..+++|+.|.+
T Consensus 276 Lnls~tgi~si~~~d~---------------------~s~~kt~~f~kL~~L~i~~N~I~~w-~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDV---------------------ESLDKTHTFPKLEYLNISENNIRDW-RSLNHLRTLENLKHLRI 333 (505)
T ss_pred hhccccCcchhcCCCc---------------------cchhhhcccccceeeecccCccccc-cccchhhccchhhhhhc
Confidence 5555554443332211 0011234567777777777776322 11235555667777776
Q ss_pred CCCccc
Q 001497 255 DDSSLH 260 (1066)
Q Consensus 255 ~~~~~~ 260 (1066)
..+.+.
T Consensus 334 ~~n~ln 339 (505)
T KOG3207|consen 334 TLNYLN 339 (505)
T ss_pred cccccc
Confidence 666654
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=1e-10 Score=119.02 Aligned_cols=69 Identities=22% Similarity=0.461 Sum_probs=32.5
Q ss_pred hccCCCCCcEEeccCCcccc--cccccccccCCCCCcEEecCCCccchhhHHHHhhh---CCCCcEEeccCCcc
Q 001497 216 SMGSFPSLNTLHLESNNFTA--TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI---FPSLKNLSMSGCEV 284 (1066)
Q Consensus 216 ~l~~l~~L~~L~L~~~~~~~--~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~---l~~L~~L~l~~~~~ 284 (1066)
.+...+.|+.+++..|.+.. .......+..+++|++|||.+|.++......++.. ++.|++|++.+|.+
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 34444555555555555432 11223445555666666666665554333332221 34455555555543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.1e-10 Score=121.91 Aligned_cols=115 Identities=24% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCCCccEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccccccCCC
Q 001497 168 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFT 247 (1066)
Q Consensus 168 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~ 247 (1066)
++.+|+++.|.++.+......+....+.+.+.|+|+.+-+.........+..+|+|+.|.++.|.+....... .-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-TTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-chhhhh
Confidence 4556666666666655444334455566666666666655555555556677788888888887765433211 112467
Q ss_pred CCcEEecCCCccchhhHHHHhhhCCCCcEEeccCCc
Q 001497 248 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE 283 (1066)
Q Consensus 248 ~L~~L~L~~~~~~~~~~~~l~~~l~~L~~L~l~~~~ 283 (1066)
+|+.|.++.|.++.....++...+|+|+.|++..|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 788888888888766666666668888888887775
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=3.5e-10 Score=108.74 Aligned_cols=119 Identities=30% Similarity=0.415 Sum_probs=32.4
Q ss_pred CcCcccccccCCCCCcEEECCCCcccCcccccccc-CCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCC
Q 001497 56 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFD-SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN 134 (1066)
Q Consensus 56 ~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~ 134 (1066)
+.|...+...+..++++|+|+++.+... +.++ .+.+|++|+|++|.|..+ +.+..+++|++|++++|.++
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---
T ss_pred cccccccccccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCC
Confidence 3444444445566677777777776521 2333 456777777777777665 34556677777777777766
Q ss_pred ccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCccEEEcCCCccC
Q 001497 135 NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 183 (1066)
Q Consensus 135 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~i~ 183 (1066)
.........+++|++|++++|++...-....++.+++|++|++.+|.+.
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5322212346677777777776654333345566666666666666554
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=1.3e-10 Score=118.24 Aligned_cols=68 Identities=22% Similarity=0.356 Sum_probs=35.4
Q ss_pred CCCCCCCCCcEEECCCCccccccchhc-----cCCCCCcEEecccCcCcCC---CCCccccCCCCCCEEEcccCcc
Q 001497 346 QGLCPLAHLQELYIDNNDLRGSLPWCL-----ANTTSLRILDVSFNQLTGS---ISSSPLVHLTSIEELRLSNNHF 413 (1066)
Q Consensus 346 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~---i~~~~l~~l~~L~~L~L~~n~l 413 (1066)
.+++.+++|++|++++|.+......+| ...++|+.|.+.+|.++.. .-.......+.|+.|+|++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 345555566666666665554332222 1245666666666665421 0012234456677777777766
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.7e-10 Score=114.06 Aligned_cols=60 Identities=38% Similarity=0.443 Sum_probs=33.9
Q ss_pred CCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCc
Q 001497 743 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805 (1066)
Q Consensus 743 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 805 (1066)
+..|+++|||+|.|+ .+.+...-.|.++.|++++|.+... +.+..+++|+.||||+|.++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence 345666666666665 4445555556666666666666522 12555566666666666554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=3.7e-10 Score=111.67 Aligned_cols=226 Identities=23% Similarity=0.231 Sum_probs=113.7
Q ss_pred CCCCCcEEECCCCc-------ccCCCCccccCCCCCCCeeeCCCCcCcccccc-cCCCCCcEEECCCCcccCcccccccc
Q 001497 19 RLSSLRSLYLSDNR-------LEGSIDVKELDSLRDLEELDIGGNKIDKFMVS-KGLSKLKSLGLSGTGFKGTFDVREFD 90 (1066)
Q Consensus 19 ~~~~L~~L~l~~~~-------~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~ 90 (1066)
=+.+|++|..++.. |.....+-.+.-+++|..+.++.|.-..+... ..-|.|+++.+.+..+.... .+-
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~---~l~ 256 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP---SLL 256 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc---ccc
Confidence 35678888877642 22122233456678888888888876555444 44567788877766543210 000
Q ss_pred CCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCC
Q 001497 91 SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 170 (1066)
Q Consensus 91 ~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 170 (1066)
....+ -|.....-+....+ ....+..-+.|+++|+++|.|+. +-.++.-.|.++.|++++|.+. .+. .++.++
T Consensus 257 pe~~~--~D~~~~E~~t~~G~-~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~ 329 (490)
T KOG1259|consen 257 PETIL--ADPSGSEPSTSNGS-ALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ--NLAELP 329 (490)
T ss_pred chhhh--cCccCCCCCccCCc-eEEecchHhhhhhccccccchhh-hhhhhhhccceeEEecccccee-eeh--hhhhcc
Confidence 00111 11111100000000 00111122345555555555433 2333334455555555555554 222 355555
Q ss_pred CccEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccccccCCCCCc
Q 001497 171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLE 250 (1066)
Q Consensus 171 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~ 250 (1066)
+|++|||++|.++... .+-..+-+.+.|.++.+.+.+.. .++++-+|..|++++|++..... ...+++++.|+
T Consensus 330 ~L~~LDLS~N~Ls~~~--Gwh~KLGNIKtL~La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE 402 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAECV--GWHLKLGNIKTLKLAQNKIETLS----GLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLE 402 (490)
T ss_pred cceEeecccchhHhhh--hhHhhhcCEeeeehhhhhHhhhh----hhHhhhhheeccccccchhhHHH-hcccccccHHH
Confidence 5555555555544332 22233445555555555444332 34566667777777777654332 24677778888
Q ss_pred EEecCCCccch
Q 001497 251 YLTLDDSSLHI 261 (1066)
Q Consensus 251 ~L~L~~~~~~~ 261 (1066)
.+.+.+|++.+
T Consensus 403 ~l~L~~NPl~~ 413 (490)
T KOG1259|consen 403 TLRLTGNPLAG 413 (490)
T ss_pred HHhhcCCCccc
Confidence 88888877654
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.6e-09 Score=104.13 Aligned_cols=130 Identities=27% Similarity=0.343 Sum_probs=48.1
Q ss_pred ccCCCCCCCeeeCCCCcCccccccc-CCCCCcEEECCCCcccCccccccccCCCCcCEEEcCCCcccccccccchhhh-c
Q 001497 41 ELDSLRDLEELDIGGNKIDKFMVSK-GLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL-S 118 (1066)
Q Consensus 41 ~l~~l~~L~~L~L~~~~i~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l-~ 118 (1066)
.+.+..++|+|+|+++.|+.+.... .+.+|+.|++++|.+.. .+.+..+++|++|++++|.|+.+. +.+ .
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~---l~~l~~L~~L~~L~L~~N~I~~i~-----~~l~~ 85 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK---LEGLPGLPRLKTLDLSNNRISSIS-----EGLDK 85 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-C-----HHHHH
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCCcc---ccCccChhhhhhcccCCCCCCccc-----cchHH
Confidence 3445566788888888888776664 57888888888888762 335677888888888888887763 123 3
Q ss_pred cCCCccEEecCCCCCCcc-chhhccCCCCCcEEEcCCCcCCCCCC--hhhhcCCCCccEEEcC
Q 001497 119 RLSKLKKLDLRGNLCNNS-ILSSVARLSSLTSLHLSHNILQGSID--AKEFDSLSNLEELDIN 178 (1066)
Q Consensus 119 ~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~L~ 178 (1066)
.+++|++|++++|.|.+. ....++.+++|++|++.+|++...-. ...+..+|+|+.||-.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 578888888888887652 34567778888888888888763322 2245667888877654
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.83 E-value=3.8e-10 Score=117.36 Aligned_cols=290 Identities=22% Similarity=0.190 Sum_probs=169.9
Q ss_pred CcCEEEcCCCcccccccccchhhhccCCCccEEecCCCC-CCccchhhcc-CCCCCcEEEcCCCcCCCCCChh-hhcCCC
Q 001497 94 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL-CNNSILSSVA-RLSSLTSLHLSHNILQGSIDAK-EFDSLS 170 (1066)
Q Consensus 94 ~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~-~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~-~l~~l~ 170 (1066)
.|+.|.+.++.-....... ....+++++++|++.++. +++.....++ .+++|++|++..|......... .-..++
T Consensus 139 ~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 6777777776533322111 123467777777777765 3333333444 3677888887775322122221 233567
Q ss_pred CccEEEcCCC-ccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccccccCCCCC
Q 001497 171 NLEELDINDN-EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 249 (1066)
Q Consensus 171 ~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L 249 (1066)
+|++++++|+ ++++..+....+++..++.+.+.+|.....+.+...-+.++-+.++++..|...++...+..-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 8888888887 456655566677777777776666665555555555566666777777777666665555555667888
Q ss_pred cEEecCCCc-cchhhHHHHhhhCCCCcEEeccCCcccccccC-CCCccccccccccchhhHhhhccchhhhhcCCCCcce
Q 001497 250 EYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG-QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK 327 (1066)
Q Consensus 250 ~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 327 (1066)
++|+.+++. +.......++...++|+.+-++.|+.-+..-. ..-.+++.|+.+++..+....+.. +......++.|+
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-L~sls~~C~~lr 375 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-LASLSRNCPRLR 375 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-HhhhccCCchhc
Confidence 888888765 45555566777688888888888864222111 112456778888777776655542 233345667777
Q ss_pred eeeccCCcCCC-CCCcccCCCCCCCCCCcEEECCCCccc-cccchhccCCCCCcEEecccC
Q 001497 328 YLSLSGSTLGT-NSSRILDQGLCPLAHLQELYIDNNDLR-GSLPWCLANTTSLRILDVSFN 386 (1066)
Q Consensus 328 ~l~l~~~~~~~-~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n 386 (1066)
++.++.|...+ ++...+...-+.+..|+.+.|++++.. ...-+.+..++.|+.+++..+
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 77777664433 222333333445566666666666532 222233344444444444443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.7e-09 Score=84.12 Aligned_cols=60 Identities=50% Similarity=0.630 Sum_probs=43.6
Q ss_pred ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcC
Q 001497 870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 929 (1066)
Q Consensus 870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 929 (1066)
.|+.|++++|+++...+..|..+++|++|++++|+++...|.+|.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 567777777777766666777777777777777777766667777777777777777764
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=4.4e-09 Score=82.88 Aligned_cols=61 Identities=39% Similarity=0.572 Sum_probs=57.6
Q ss_pred CCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcc
Q 001497 893 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 953 (1066)
Q Consensus 893 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l 953 (1066)
++|++|++++|+|+...+..|.++++|++||+++|+++...|.+|.+++.|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988778999999999999999999988889999999999999999986
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=1.3e-09 Score=113.39 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=83.6
Q ss_pred ccCCCCCcEEeccCCcccccccccccccCCCCCcEEecCCCc-cchhhHHHHhhhCCCCcEEeccCCcccccc-cCCCCc
Q 001497 217 MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVL-SGQGFP 294 (1066)
Q Consensus 217 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~-~~~~~~ 294 (1066)
-..+..|++|+.+++...+..+.+.--.+.++|+.|.++.|+ ++...+..++..++.|+.+++.+|...... -...-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 334445555555555444433333333444555555555554 344444445544566666666665432211 111234
Q ss_pred cccccccccchhhHhhhccchh--hhhcCCCCcceeeeccCCcCCCCCCcccCCCCCCCCCCcEEECCCCcccc--ccch
Q 001497 295 HFKSLEHLDMRFARIALNTSFL--QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG--SLPW 370 (1066)
Q Consensus 295 ~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~ 370 (1066)
+++.|+.+.++.|....+.... ......+..+..+.+++++..++.. .+.+..+++|+.+++-++.-.. .+..
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~---Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT---LEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH---HHHHhhCcccceeeeechhhhhhhhhHH
Confidence 5666666666666555444111 1122345667778888877654332 2356678899999998885322 1222
Q ss_pred hccCCCCCcEEe
Q 001497 371 CLANTTSLRILD 382 (1066)
Q Consensus 371 ~~~~l~~L~~L~ 382 (1066)
.-.++++++...
T Consensus 447 ~~~~lp~i~v~a 458 (483)
T KOG4341|consen 447 FATHLPNIKVHA 458 (483)
T ss_pred HHhhCccceehh
Confidence 234455555543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2.2e-09 Score=122.15 Aligned_cols=225 Identities=29% Similarity=0.311 Sum_probs=116.8
Q ss_pred CCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccE
Q 001497 644 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQ 723 (1066)
Q Consensus 644 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~ 723 (1066)
+..+++|+.|++.+|++. .+...+..+++|++|++++|+++...+ +..++.|+.|++++|.++.
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~------------- 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD------------- 154 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh-------------
Confidence 344455555555555554 222224445555555555555543322 3334445555555555542
Q ss_pred EEcCCCccccccCcccccCCCCccEEEccCcccccccc-hhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCC
Q 001497 724 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 802 (1066)
Q Consensus 724 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 802 (1066)
+. .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|
T Consensus 155 -----------~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 155 -----------IS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred -----------cc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence 11 23345666666666666664333 1 35556666666666666522 22333334444455566
Q ss_pred cCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhcccccccccccccc--ccceEEccCCc
Q 001497 803 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS--LLAGLDLSCNK 880 (1066)
Q Consensus 803 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~ 880 (1066)
.++..-+... +. .|+.+++++|.
T Consensus 219 ~i~~~~~l~~-------------------------------------------------------~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 219 KISKLEGLNE-------------------------------------------------------LVMLHLRELYLSGNR 243 (414)
T ss_pred cceeccCccc-------------------------------------------------------chhHHHHHHhcccCc
Confidence 5542211000 01 25667777777
Q ss_pred ccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccc---cCcc-ccCCCCCCEEEcccCccccc
Q 001497 881 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK---IPRQ-LVDLNTLAIFIVAYNNLSGK 956 (1066)
Q Consensus 881 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~l~ls~N~l~g~ 956 (1066)
+. .++..+..+..+..|++++|++...-. +.....+..+.++.|.+... .... ......+....+.+|.....
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 76 344556667777777777777764332 34445666667777766521 1111 34556666667777766654
Q ss_pred CC
Q 001497 957 IP 958 (1066)
Q Consensus 957 ip 958 (1066)
.+
T Consensus 321 ~~ 322 (414)
T KOG0531|consen 321 SS 322 (414)
T ss_pred cc
Confidence 44
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=2.7e-08 Score=120.56 Aligned_cols=132 Identities=26% Similarity=0.262 Sum_probs=89.5
Q ss_pred CCCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcc-cCccccccccCCCCcCEEEcCCCcc-cccccccchhhhccC
Q 001497 43 DSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF-KGTFDVREFDSFNNLEVLDMSGNEI-DNLVVPQGLERLSRL 120 (1066)
Q Consensus 43 ~~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~-~~~~~~~~~~~l~~L~~L~Ls~~~i-~~~~~~~~l~~l~~l 120 (1066)
......|...+-++.+...+....++.|++|-+.++.. ........|..++.|++|||++|.- ..+| ..++.+
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-----~~I~~L 594 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-----SSIGEL 594 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-----hHHhhh
Confidence 34466777777777777777667777888888877752 2234444577788888888886532 2232 456677
Q ss_pred CCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCccEEEcCCCc
Q 001497 121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181 (1066)
Q Consensus 121 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 181 (1066)
-+||+|+++++.+. .+|..++++..|.+|++..+.-...+ +.....+++|++|.+....
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 88888888888766 46778888888888888876654333 3355557788888776543
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=8.6e-09 Score=117.32 Aligned_cols=127 Identities=32% Similarity=0.411 Sum_probs=60.5
Q ss_pred CCCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCccccc-ccCCCCCcEEECCCCcccCccccccccCCCCcCEE
Q 001497 20 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMV-SKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVL 98 (1066)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 98 (1066)
+..++.+.+..|.+... ...+..+++|++|++.+++|..+.. ...+++|++|++++|.+. ....+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~~--~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~---~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKI--LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT---KLEGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhhh--hcccccccceeeeeccccchhhcccchhhhhcchheeccccccc---cccchhhccchhhh
Confidence 34444444555544421 2234555555555555555555544 445555555555555543 12233444445555
Q ss_pred EcCCCcccccccccchhhhccCCCccEEecCCCCCCccch-hhccCCCCCcEEEcCCCcCC
Q 001497 99 DMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSIL-SSVARLSSLTSLHLSHNILQ 158 (1066)
Q Consensus 99 ~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~ 158 (1066)
++++|.|..+ ..+..++.|+.+++++|.+..... . +..+.+++.+++.+|.+.
T Consensus 146 ~l~~N~i~~~------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLISDI------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcchhc------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 5555555444 233335555555555555444222 1 344455555555555443
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=8.6e-08 Score=116.23 Aligned_cols=84 Identities=32% Similarity=0.413 Sum_probs=39.7
Q ss_pred ccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCC
Q 001497 620 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 699 (1066)
Q Consensus 620 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 699 (1066)
|..++.|++|||++|.-.+.+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+.-...+|.....+.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 334444444444444444444444554555555555555444 4455555555555555544443333344444455555
Q ss_pred EEEcc
Q 001497 700 ILDIS 704 (1066)
Q Consensus 700 ~L~l~ 704 (1066)
+|.+.
T Consensus 646 ~L~l~ 650 (889)
T KOG4658|consen 646 VLRLP 650 (889)
T ss_pred EEEee
Confidence 55443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.8e-09 Score=103.49 Aligned_cols=183 Identities=22% Similarity=0.151 Sum_probs=84.0
Q ss_pred ccEEecCCCCCCcc-chhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCccEEEcCCC-ccCchhhcccccccceeeEe
Q 001497 123 LKKLDLRGNLCNNS-ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLRKLKSL 200 (1066)
Q Consensus 123 L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L 200 (1066)
|+++|++...++.. +-..++.|.+|+.|.+.++++...+.. .+++-.+|+.|+++.+ .++.....-++..|+.|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 44555554444322 222344445555555555554433322 4444445555555443 33333444444445555555
Q ss_pred ecCCCccccccchhhhccCCCCCcEEeccCCcccc-cccccccccCCCCCcEEecCCCc-cchhhHHHHhhhCCCCcEEe
Q 001497 201 DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA-TLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLS 278 (1066)
Q Consensus 201 ~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~ 278 (1066)
+|++|...........-.--++|+.|+++++.-.- ......-...+++|.+|||++|. ++......+.+ ++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeee
Confidence 55544333211111111112455566666554211 00111223446667777777655 34444455555 67777777
Q ss_pred ccCCcccccccCCCCccccccccccchhh
Q 001497 279 MSGCEVNGVLSGQGFPHFKSLEHLDMRFA 307 (1066)
Q Consensus 279 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 307 (1066)
++.|.....-....+...+.|..|++.++
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 77775432211222444566666666554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.2e-09 Score=103.30 Aligned_cols=187 Identities=25% Similarity=0.220 Sum_probs=87.0
Q ss_pred CCcEEEcCCCcCCCCCChhhhcCCCCccEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcE
Q 001497 146 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNT 225 (1066)
Q Consensus 146 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~ 225 (1066)
.|++|||+...++..--...+..+.+|+.|.+.++++.+.... -...-+.|+.|+|+.+++....+..-.+.+++.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4566666655544221122344555566666666655544322 233344555556655554444433334555566666
Q ss_pred EeccCCcccccccccccccCCCCCcEEecCCCc--cchhhHHHHhhhCCCCcEEeccCCcccccccCCCCcccccccccc
Q 001497 226 LHLESNNFTATLTTTQELHNFTNLEYLTLDDSS--LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 303 (1066)
Q Consensus 226 L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 303 (1066)
|++++|...........-.--++|+.|+++++. +...-...+...+|+|.+|++++|......-...+.+++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 666665544332111111112455555555543 222233334444566666666655433322222344555556555
Q ss_pred chhhHhhhccchhhhhcCCCCcceeeeccCCc
Q 001497 304 MRFARIALNTSFLQIIGESMPSLKYLSLSGST 335 (1066)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 335 (1066)
++.|.......+. ....+|+|.+|++.++-
T Consensus 345 lsRCY~i~p~~~~--~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLL--ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHee--eeccCcceEEEEecccc
Confidence 5555443222221 12345556666655543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=9.6e-08 Score=95.04 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=114.9
Q ss_pred CCCCcEEECCCCcccCCCCccccC-CCCCCCeeeCCCCcCcccccc----cCCCCCcEEECCCCcccCccccccccCCCC
Q 001497 20 LSSLRSLYLSDNRLEGSIDVKELD-SLRDLEELDIGGNKIDKFMVS----KGLSKLKSLGLSGTGFKGTFDVREFDSFNN 94 (1066)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~i~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~ 94 (1066)
.+.+..|.+.++.|...-+...|+ .+++++.+||.+|.|++...+ .++|+|++|+++.|.+...+.... ....+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccc
Confidence 334445666666665433334443 567888888888888776544 678888888888887753322221 35567
Q ss_pred cCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccc--hhhccC-CCCCcEEEcCCCcCCCCCChh-hhcCCC
Q 001497 95 LEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI--LSSVAR-LSSLTSLHLSHNILQGSIDAK-EFDSLS 170 (1066)
Q Consensus 95 L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~--~~~l~~-l~~L~~L~L~~n~l~~~~~~~-~l~~l~ 170 (1066)
|++|-|.+.++.-.... ..+..++.+++|.++.|...... ...... .+.+++|....|....-.... .-.-.+
T Consensus 123 l~~lVLNgT~L~w~~~~---s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQST---SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred eEEEEEcCCCCChhhhh---hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 88888877766544322 34556777777777776322110 011111 134555555444322100000 111236
Q ss_pred CccEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCccc
Q 001497 171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234 (1066)
Q Consensus 171 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 234 (1066)
++..+-+..|.+........+...+.+-.|.|+.+++.+... ++.+..++.|..|.+..+.++
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCccc
Confidence 667777777766655555555555555555555554443221 235666666666666666554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=7.1e-08 Score=95.93 Aligned_cols=62 Identities=35% Similarity=0.523 Sum_probs=27.6
Q ss_pred CCCccEEecCCCCCCc--cchhhccCCCCCcEEEcCCCcCCCCCChhhh-cCCCCccEEEcCCCccC
Q 001497 120 LSKLKKLDLRGNLCNN--SILSSVARLSSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDNEID 183 (1066)
Q Consensus 120 l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~L~~n~i~ 183 (1066)
++.++++|+.+|.|++ .+..-+.++|.|++|+++.|++...|.. + ....+|++|-|.+..+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCC
Confidence 3445555555555443 2333344455555555555554433321 1 23344555544444433
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=3.9e-08 Score=86.20 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=38.3
Q ss_pred ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCcc
Q 001497 870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 936 (1066)
Q Consensus 870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~ 936 (1066)
.++.|+|++|+|+ .+|.++..++.|+.||++.|.+. ..|..|..|.++..||...|.+. +||..
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 4455666666666 55666666666666666666666 45555555666666666666655 44443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.28 E-value=7.1e-07 Score=87.80 Aligned_cols=150 Identities=23% Similarity=0.183 Sum_probs=86.7
Q ss_pred CCCccEEEcCCCccCchhh---cccccccceeeEeecCCCccccc--cchh-hhccCCCCCcEEeccCCcccc--ccccc
Q 001497 169 LSNLEELDINDNEIDNVEV---SRGYRGLRKLKSLDLSGVGIRDG--NKLL-QSMGSFPSLNTLHLESNNFTA--TLTTT 240 (1066)
Q Consensus 169 l~~L~~L~L~~n~i~~~~~---~~~~~~~~~L~~L~L~~~~~~~~--~~~~-~~l~~l~~L~~L~L~~~~~~~--~~~~~ 240 (1066)
-|.|++.....|++..... ...+....+++.+.+..+.+..- ...+ ..+..+.+|++|++..|.++- .....
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 3555555555554433221 12233334555555555555432 1111 145567788888888887642 22334
Q ss_pred ccccCCCCCcEEecCCCccchhhHHHHh-----hhCCCCcEEeccCCcccccccCC------CCccccccccccchhhHh
Q 001497 241 QELHNFTNLEYLTLDDSSLHISLLQSIG-----SIFPSLKNLSMSGCEVNGVLSGQ------GFPHFKSLEHLDMRFARI 309 (1066)
Q Consensus 241 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~-----~~l~~L~~L~l~~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~ 309 (1066)
.++...+.|+.|.+.+|-++.....++. ...|+|+.|...+|.+.+.+-.. .-..++-|..+.+.+|++
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 5667778889999999888766554442 23688999999888765543221 123456667777777776
Q ss_pred hhccchhhh
Q 001497 310 ALNTSFLQI 318 (1066)
Q Consensus 310 ~~~~~~~~~ 318 (1066)
.....+...
T Consensus 316 ~E~~d~~d~ 324 (388)
T COG5238 316 KELADFGDY 324 (388)
T ss_pred hhHHHHHHH
Confidence 655444433
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.20 E-value=7.9e-07 Score=105.11 Aligned_cols=83 Identities=29% Similarity=0.400 Sum_probs=41.5
Q ss_pred CCCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCccccccccCCCCcCEEE
Q 001497 20 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLD 99 (1066)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 99 (1066)
||+|+.|.+.+-.+..........++++|+.||+|++.++.+...+++++|+.|.+.+-.+....+...+-.+++|++||
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 45555555555544322112233455555555555555555544455555555555555554333444444455555555
Q ss_pred cCC
Q 001497 100 MSG 102 (1066)
Q Consensus 100 Ls~ 102 (1066)
+|.
T Consensus 227 IS~ 229 (699)
T KOG3665|consen 227 ISR 229 (699)
T ss_pred ccc
Confidence 554
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=7.5e-08 Score=107.03 Aligned_cols=201 Identities=23% Similarity=0.271 Sum_probs=115.2
Q ss_pred CCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCcccccccCC-CCCcEEECCCCccc-Ccc---cccccc---CC
Q 001497 21 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGL-SKLKSLGLSGTGFK-GTF---DVREFD---SF 92 (1066)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~l-~~L~~L~L~~~~~~-~~~---~~~~~~---~l 92 (1066)
+.++.|.+-...-.+-..|-.|..++.||+|.+++|.++..-....+ ..|++|...+.--. ... -...++ ..
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~W 163 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVW 163 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhh
Confidence 44555555444333222244567888889999998888764333222 24444443322100 000 000011 12
Q ss_pred CCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCc
Q 001497 93 NNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNL 172 (1066)
Q Consensus 93 ~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 172 (1066)
..|.+.+.++|.+.... ..+.-++.|+.|||++|++.. ...+..+++|++|||++|.+. .++.-....+. |
T Consensus 164 n~L~~a~fsyN~L~~mD-----~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMD-----ESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-L 234 (1096)
T ss_pred hhHhhhhcchhhHHhHH-----HHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-h
Confidence 25666667777665442 456667777888888887766 336777778888888887776 44432333333 7
Q ss_pred cEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCccc
Q 001497 173 EELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234 (1066)
Q Consensus 173 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 234 (1066)
+.|.+++|.++... ....++.|+.||+++|-+...... ..+..+..|++|.|.+|.+.
T Consensus 235 ~~L~lrnN~l~tL~---gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLR---GIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhhh---hHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCccc
Confidence 77777777665543 234566777777777765554432 23455667777888877764
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=4.4e-08 Score=108.78 Aligned_cols=180 Identities=28% Similarity=0.279 Sum_probs=94.0
Q ss_pred HhhhcCCCCCcEEECCCCcccCCCCccccCCCC-CCCeeeCCCCcCcc-----------cccccCCCCCcEEECCCCccc
Q 001497 14 LSSLARLSSLRSLYLSDNRLEGSIDVKELDSLR-DLEELDIGGNKIDK-----------FMVSKGLSKLKSLGLSGTGFK 81 (1066)
Q Consensus 14 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~L~~~~i~~-----------~~~~~~l~~L~~L~L~~~~~~ 81 (1066)
|-++..|+.||+|.+.+|++... ..+..++ .|++|.-++. ... +....---.|.+-+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 45677899999999999998742 2333332 3444433221 111 000011123444455555442
Q ss_pred CccccccccCCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCC
Q 001497 82 GTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSI 161 (1066)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 161 (1066)
. -.+.+.-++.|++|+|+.|++... ..+..|++|++|||+.|.+....--....+ +|+.|.+++|.++ .
T Consensus 178 -~-mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~-t- 246 (1096)
T KOG1859|consen 178 -L-MDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALT-T- 246 (1096)
T ss_pred -h-HHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHH-h-
Confidence 1 122344455666666666666554 355566666666666665544221122222 2666666666655 1
Q ss_pred ChhhhcCCCCccEEEcCCCccCchhhcccccccceeeEeecCCCcccc
Q 001497 162 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 209 (1066)
Q Consensus 162 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~ 209 (1066)
...+.++.+|+.||+++|-+.+..-.+.+..+..|+.|.|.+|+...
T Consensus 247 -L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 247 -LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 12455666666666666655554444444455556666666665543
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=1.9e-06 Score=84.89 Aligned_cols=196 Identities=18% Similarity=0.296 Sum_probs=100.2
Q ss_pred cCCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCC---cc-------chhhccCCCCCcEEEcCCCcCCC
Q 001497 90 DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN---NS-------ILSSVARLSSLTSLHLSHNILQG 159 (1066)
Q Consensus 90 ~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~---~~-------~~~~l~~l~~L~~L~L~~n~l~~ 159 (1066)
..+..+..++||+|.|..-.....-..+.+-.+|+..+++.-... +. +.+++.+||+|++.+||+|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 335566666666666654322111123344556666666654211 11 23455566777777777776654
Q ss_pred CCCh---hhhcCCCCccEEEcCCCccCchhhccc------------ccccceeeEeecCCCccccccchhh--hccCCCC
Q 001497 160 SIDA---KEFDSLSNLEELDINDNEIDNVEVSRG------------YRGLRKLKSLDLSGVGIRDGNKLLQ--SMGSFPS 222 (1066)
Q Consensus 160 ~~~~---~~l~~l~~L~~L~L~~n~i~~~~~~~~------------~~~~~~L~~L~L~~~~~~~~~~~~~--~l~~l~~ 222 (1066)
..++ +.+++-+.|++|.+.+|.+.......+ ....+.|+......++..+.+.... .+....+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 4432 234555667777777665433221111 1233456666665555554443222 3444456
Q ss_pred CcEEeccCCccccccc---ccccccCCCCCcEEecCCCccchhhHHHHhhh---CCCCcEEeccCCccc
Q 001497 223 LNTLHLESNNFTATLT---TTQELHNFTNLEYLTLDDSSLHISLLQSIGSI---FPSLKNLSMSGCEVN 285 (1066)
Q Consensus 223 L~~L~L~~~~~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~---l~~L~~L~l~~~~~~ 285 (1066)
|+++.+..|.+...-. ....+..+++|++||+.+|.++-.....++.. .+.|++|.+.+|-++
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 7777777766543211 01233445677777777777654433333221 344566666666443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=1.9e-06 Score=102.05 Aligned_cols=186 Identities=26% Similarity=0.293 Sum_probs=121.2
Q ss_pred CcCcchHhhhcCCCCCcEEECCCCcccCCC-------Cc-----ccc--CCCCCCCeeeCCCCcCccccc--c--cCCCC
Q 001497 8 AFNNNVLSSLARLSSLRSLYLSDNRLEGSI-------DV-----KEL--DSLRDLEELDIGGNKIDKFMV--S--KGLSK 69 (1066)
Q Consensus 8 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-------~~-----~~l--~~l~~L~~L~L~~~~i~~~~~--~--~~l~~ 69 (1066)
.+.....+.+.+.. |+.|.+.+....... +. ..+ ..-.+||+|+++|...-.-.+ . ..+|.
T Consensus 71 ~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPs 149 (699)
T KOG3665|consen 71 TLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPS 149 (699)
T ss_pred ecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcc
Confidence 33343444444444 777777764432211 10 011 123578999998865322222 1 56899
Q ss_pred CcEEECCCCcccCccccccccCCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCc-cchhhccCCCCCc
Q 001497 70 LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNN-SILSSVARLSSLT 148 (1066)
Q Consensus 70 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~ 148 (1066)
|++|.+.+..+....-.....++++|..||+|+++++.+ ..++++++|+.|.+.+-.+.. .....+.++++|+
T Consensus 150 L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 150 LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL------SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred cceEEecCceecchhHHHHhhccCccceeecCCCCccCc------HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 999999998876444445667899999999999988776 467788889988888777654 4456788899999
Q ss_pred EEEcCCCcCCCCC--C---hhhhcCCCCccEEEcCCCccCchhhcccccccceeeEe
Q 001497 149 SLHLSHNILQGSI--D---AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 200 (1066)
Q Consensus 149 ~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L 200 (1066)
.||+|........ . .+.-..+|+|+.||.+++.+.+..........++|+.+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 9999987644221 0 11223478888888888887776666555555555553
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.4e-05 Score=57.12 Aligned_cols=36 Identities=42% Similarity=0.699 Sum_probs=20.5
Q ss_pred CCCEEECcCccCccccchhccCCCCCCEEeCCCCcCc
Q 001497 894 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 930 (1066)
Q Consensus 894 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 930 (1066)
+|++|++++|+|+ .+|..++++++|+.||+++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666666 44445666666666666666655
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=8e-07 Score=78.20 Aligned_cols=105 Identities=26% Similarity=0.255 Sum_probs=49.2
Q ss_pred ccEEEccCCcccccCChhhhh--cCCCCcEEEccCCcccccCCccc-cCcccCCEEEccCccCccccChhhhhcCCCCCE
Q 001497 528 LRFLDVSNNNFQGHIPVEIGD--ILPSLVYFNISMNALDGSIPSSF-GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 604 (1066)
Q Consensus 528 L~~L~ls~n~l~~~ip~~~~~--~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~ 604 (1066)
+..+++++|++- .+++.... ....|+..++++|.+. .+|..| ...+.++.+++++|.++ .+|..+ ..++.|+.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPALRS 104 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHhhh
Confidence 445566666553 44443322 1223444555555555 223222 22335555555555555 555553 34555555
Q ss_pred EEccCccccccccccccCCCCCCeEeccCcccc
Q 001497 605 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 637 (1066)
Q Consensus 605 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 637 (1066)
|+++.|.+. ..|+.+..+.++-+|+..+|...
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 555555554 23333334444444444444443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=7.5e-05 Score=81.13 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=33.4
Q ss_pred CCCCEEECcCccCccccchhccCCCCCCEEeCCCCc-----C-ccccCccccCCCCCCEEEcccCcc
Q 001497 893 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK-----L-SGKIPRQLVDLNTLAIFIVAYNNL 953 (1066)
Q Consensus 893 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-----l-~~~ip~~l~~l~~L~~l~ls~N~l 953 (1066)
++|++|++++|... ..|..+. .+|+.|++++|. + .+.+|+.+ .+....++.++.+.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence 46788888877765 3444433 577788877763 1 23556555 555554455555444
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=2.5e-05 Score=55.94 Aligned_cols=37 Identities=43% Similarity=0.742 Sum_probs=32.4
Q ss_pred ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCcc
Q 001497 870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 907 (1066)
Q Consensus 870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 907 (1066)
.|++|++++|+|+ .+|+.++++++|+.|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 6899999999999 677789999999999999999994
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=0.00012 Score=69.70 Aligned_cols=85 Identities=25% Similarity=0.345 Sum_probs=44.5
Q ss_pred CcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCcc
Q 001497 94 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 173 (1066)
Q Consensus 94 ~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 173 (1066)
....+||++|++... ..|..++.|.+|.++.|.|+..-|.--.-+++|+.|.+.+|.+..--+...+..+|+|+
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 455566666655443 34455556666666666655543333333455666666665554322333455555555
Q ss_pred EEEcCCCccCc
Q 001497 174 ELDINDNEIDN 184 (1066)
Q Consensus 174 ~L~L~~n~i~~ 184 (1066)
+|.+-+|.++.
T Consensus 117 ~Ltll~Npv~~ 127 (233)
T KOG1644|consen 117 YLTLLGNPVEH 127 (233)
T ss_pred eeeecCCchhc
Confidence 55555555443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.43 E-value=0.00035 Score=65.18 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=39.6
Q ss_pred hhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCC
Q 001497 545 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 624 (1066)
Q Consensus 545 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 624 (1066)
..+...++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...|.++++++.+.+.. .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence 3333344555555543 344344445555555555555543 43 45555555554555555543 33323333444445
Q ss_pred CCCeEeccCccccccCCCCCCCCCCCcEEEcc
Q 001497 625 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 656 (1066)
Q Consensus 625 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 656 (1066)
+|+.+++..+ +.......|.++ .|+.+.+.
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555554433 322333344443 44444444
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00025 Score=67.56 Aligned_cols=129 Identities=25% Similarity=0.310 Sum_probs=95.8
Q ss_pred CcEEECCCCcccCCCCccccC-CCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCccccccccCCCCcCEEEcC
Q 001497 23 LRSLYLSDNRLEGSIDVKELD-SLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMS 101 (1066)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~Ls 101 (1066)
=+.+++.+..+... +.++ -+.....+||+.|.+..++...+++.|.+|.+.+|.+. .+++..-..+++|+.|.|.
T Consensus 21 e~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccch---hhccccccccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 35567777665421 1233 34567888999998888777788999999999999886 5555555667889999999
Q ss_pred CCcccccccccchhhhccCCCccEEecCCCCCCcc---chhhccCCCCCcEEEcCCCcCC
Q 001497 102 GNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS---ILSSVARLSSLTSLHLSHNILQ 158 (1066)
Q Consensus 102 ~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~---~~~~l~~l~~L~~L~L~~n~l~ 158 (1066)
+|.|..+. .+..+..|++|++|.+-+|.+... -.-.+..+|+|++||..+..-.
T Consensus 97 nNsi~~l~---dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 97 NNSIQELG---DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred Ccchhhhh---hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 99988774 346778899999999999886542 1235678899999999887544
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.39 E-value=0.00065 Score=74.02 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=8.3
Q ss_pred CCCCcEEEccCCccc
Q 001497 501 NTKLEFLYLVNDSLA 515 (1066)
Q Consensus 501 ~~~L~~L~l~~n~l~ 515 (1066)
+.++..|++++|.++
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 455556666655444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=1e-05 Score=80.13 Aligned_cols=83 Identities=27% Similarity=0.396 Sum_probs=40.0
Q ss_pred CCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCccccccccCCCCcCEEEcCCCcccccccccchhhhccCCCcc
Q 001497 45 LRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLK 124 (1066)
Q Consensus 45 l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~ 124 (1066)
+.+.+.|+..+|.++++....+|+.|++|.|+-|.++ ....+..|++|++|+|..|.|..+ ..++-+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sl---dEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESL---DELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccH---HHHHHHhcCchhh
Confidence 4455566666666665544455555555555555443 123344455555555555544433 1223344444444
Q ss_pred EEecCCCCC
Q 001497 125 KLDLRGNLC 133 (1066)
Q Consensus 125 ~L~L~~n~~ 133 (1066)
.|.|..|.+
T Consensus 92 ~LWL~ENPC 100 (388)
T KOG2123|consen 92 TLWLDENPC 100 (388)
T ss_pred hHhhccCCc
Confidence 444444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.33 E-value=0.0005 Score=64.12 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=65.5
Q ss_pred CCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCC
Q 001497 567 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK 646 (1066)
Q Consensus 567 ~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 646 (1066)
...+|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 345677888888888874 565 777777778878888888775 6656666777777788888865 444344556777
Q ss_pred CCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCC
Q 001497 647 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698 (1066)
Q Consensus 647 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 698 (1066)
+++|+.+++..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 788888887654 443445566666 777777765 4444555666666655
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.05 E-value=0.00012 Score=86.52 Aligned_cols=115 Identities=27% Similarity=0.322 Sum_probs=48.0
Q ss_pred CCCccEEEcCCC-ccCchhhcccccccceeeEeecCCC-ccccccc--hhhhccCCCCCcEEeccCCccccccccccccc
Q 001497 169 LSNLEELDINDN-EIDNVEVSRGYRGLRKLKSLDLSGV-GIRDGNK--LLQSMGSFPSLNTLHLESNNFTATLTTTQELH 244 (1066)
Q Consensus 169 l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~ 244 (1066)
.+.|+.+.+..+ .+.+.........++.|+.|+++++ ....... .......+++|+.|+++.+...+.........
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555544 2332222333444555555555442 1111111 11123334555555555554322222111122
Q ss_pred CCCCCcEEecCCCc-cchhhHHHHhhhCCCCcEEeccCCc
Q 001497 245 NFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCE 283 (1066)
Q Consensus 245 ~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~l~~~~ 283 (1066)
.+++|++|.+.+|. ++......+...++.|++|+++.|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24455555555444 4444444444445555555555443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=2.8e-05 Score=77.14 Aligned_cols=105 Identities=23% Similarity=0.224 Sum_probs=83.8
Q ss_pred CCCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCccccccccCCCCcCEEE
Q 001497 20 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLD 99 (1066)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 99 (1066)
+...+.|++.||++. +.....+++.|++|.||-|+|+.+.....|++|++|.|..|.|.......-+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 567888999999887 34567799999999999999999999999999999999999998666677788999999999
Q ss_pred cCCCcccccccccc-hhhhccCCCccEEe
Q 001497 100 MSGNEIDNLVVPQG-LERLSRLSKLKKLD 127 (1066)
Q Consensus 100 Ls~~~i~~~~~~~~-l~~l~~l~~L~~L~ 127 (1066)
|..|.-.+...+.. -..+.-+++|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 99887655443311 13345566666665
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.99 E-value=0.00016 Score=85.38 Aligned_cols=244 Identities=25% Similarity=0.231 Sum_probs=130.8
Q ss_pred cCCCCcCEEEcCCCc-ccccccccchhhhccCCCccEEecCCC-CC-Cc---cchhhccCCCCCcEEEcCCCcCCCCCCh
Q 001497 90 DSFNNLEVLDMSGNE-IDNLVVPQGLERLSRLSKLKKLDLRGN-LC-NN---SILSSVARLSSLTSLHLSHNILQGSIDA 163 (1066)
Q Consensus 90 ~~l~~L~~L~Ls~~~-i~~~~~~~~l~~l~~l~~L~~L~L~~n-~~-~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 163 (1066)
..++.|+.|.+.++. +.... .......+++|+.|+++++ .. .. ........+++|+.|+++++....+...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hhCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 446777777777663 22211 1133456777888887762 11 11 1122334457778888887773223333
Q ss_pred hhhcC-CCCccEEEcCCCc-cCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccc
Q 001497 164 KEFDS-LSNLEELDINDNE-IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQ 241 (1066)
Q Consensus 164 ~~l~~-l~~L~~L~L~~n~-i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 241 (1066)
..+.. +++|++|.+..+. +++.....+...++.|++|+++.+......++......+++++.|.+.....
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------- 333 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------- 333 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------
Confidence 34433 6788888877776 6777777777777888888888777665555555555577777766543321
Q ss_pred cccCCCCCcEEecCCCccc--hhhHHHHhhhCCCCcEEeccCCcccccccCCCCcccccc-ccccchhhHhhhccchhhh
Q 001497 242 ELHNFTNLEYLTLDDSSLH--ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL-EHLDMRFARIALNTSFLQI 318 (1066)
Q Consensus 242 ~l~~l~~L~~L~L~~~~~~--~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~ 318 (1066)
+..++.+.+..+.-. ..........+++++.+.+..+......-......++.+ +.+....
T Consensus 334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~------------ 397 (482)
T KOG1947|consen 334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRL------------ 397 (482)
T ss_pred ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHh------------
Confidence 233333443332221 123333334477777777777763222112334455555 2222111
Q ss_pred hcCCCCcceeeeccCCcCCCCCCcccCCCCCCCCCCcEEECCCCcc
Q 001497 319 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 364 (1066)
Q Consensus 319 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l 364 (1066)
.....++.+.+..+...+........ ..+..++.+++.++..
T Consensus 398 --~~~~~l~~L~l~~~~~~t~~~l~~~~--~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 398 --CRSDSLRVLNLSDCRLVTDKGLRCLA--DSCSNLKDLDLSGCRV 439 (482)
T ss_pred --ccCCccceEecccCccccccchHHHh--hhhhccccCCccCccc
Confidence 12222677777776654432111100 0155677777777754
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00067 Score=67.83 Aligned_cols=88 Identities=27% Similarity=0.420 Sum_probs=51.7
Q ss_pred cCCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCC--CCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhc
Q 001497 90 DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN--LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFD 167 (1066)
Q Consensus 90 ~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n--~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 167 (1066)
..+..|+.|.+.+..++.+ ..+-.+++|++|.++.| .+...+......+++|++|++++|++...-....+.
T Consensus 40 d~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred ccccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 3445666666666655554 34556677777777777 444444444455577777777777766322222445
Q ss_pred CCCCccEEEcCCCccC
Q 001497 168 SLSNLEELDINDNEID 183 (1066)
Q Consensus 168 ~l~~L~~L~L~~n~i~ 183 (1066)
.+.+|..|++..|..+
T Consensus 114 ~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVT 129 (260)
T ss_pred hhcchhhhhcccCCcc
Confidence 5566666666666544
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.00072 Score=67.60 Aligned_cols=112 Identities=29% Similarity=0.262 Sum_probs=78.7
Q ss_pred cCCCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCcccccc-ccCCCCcCEEEcCCCcccccccccchhhhccC
Q 001497 42 LDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVRE-FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120 (1066)
Q Consensus 42 l~~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l 120 (1066)
...+..|+.|++.+..++.+.....+++|+.|.++.|.......... ...+++|++|++++|+|..+ ..++.+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l---stl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL---STLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc---cccchhhhh
Confidence 45677788888888877776666788888999998885433333332 24459999999999988764 334667788
Q ss_pred CCccEEecCCCCCCcc---chhhccCCCCCcEEEcCCCc
Q 001497 121 SKLKKLDLRGNLCNNS---ILSSVARLSSLTSLHLSHNI 156 (1066)
Q Consensus 121 ~~L~~L~L~~n~~~~~---~~~~l~~l~~L~~L~L~~n~ 156 (1066)
.+|..|++..|..... --..+.-+++|++||-....
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 8889999988875542 22345667888888776654
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0052 Score=36.36 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=5.1
Q ss_pred CCEEECcCccCc
Q 001497 895 IQTLNLSHNNLT 906 (1066)
Q Consensus 895 L~~L~Ls~N~l~ 906 (1066)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.39 E-value=0.0051 Score=36.40 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=14.4
Q ss_pred CCCEEeCCCCcCccccCccccC
Q 001497 918 HIESLDLSYNKLSGKIPRQLVD 939 (1066)
Q Consensus 918 ~L~~L~Ls~N~l~~~ip~~l~~ 939 (1066)
+|+.|||++|+|+ .+|.+|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 67766554
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.68 E-value=0.0026 Score=72.52 Aligned_cols=88 Identities=24% Similarity=0.255 Sum_probs=42.8
Q ss_pred cCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccC----C-CCCcEEEcCCCcCCCCCC---hhhh
Q 001497 95 LEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR----L-SSLTSLHLSHNILQGSID---AKEF 166 (1066)
Q Consensus 95 L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~----l-~~L~~L~L~~n~l~~~~~---~~~l 166 (1066)
+.+|.|.+|.+.......-...+.....|+.|++++|.+.+.-...+.+ . ..+++|++..|.++..-. .+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5666666666655433333344555666666666666665432222222 1 344555555555542211 1233
Q ss_pred cCCCCccEEEcCCCcc
Q 001497 167 DSLSNLEELDINDNEI 182 (1066)
Q Consensus 167 ~~l~~L~~L~L~~n~i 182 (1066)
.....+++++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3344555555555544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.50 E-value=0.0032 Score=71.71 Aligned_cols=40 Identities=28% Similarity=0.413 Sum_probs=18.8
Q ss_pred CcEEEcCCCcCCCCCC---hhhhcCCCCccEEEcCCCccCchh
Q 001497 147 LTSLHLSHNILQGSID---AKEFDSLSNLEELDINDNEIDNVE 186 (1066)
Q Consensus 147 L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~i~~~~ 186 (1066)
+..|.|.+|.+..... ...+...+.|+.|++++|.+.+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g 131 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEG 131 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHh
Confidence 4445555554442211 123344555666666666555443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.03 E-value=0.14 Score=28.01 Aligned_cols=11 Identities=55% Similarity=0.863 Sum_probs=3.3
Q ss_pred CCEEECcCccC
Q 001497 895 IQTLNLSHNNL 905 (1066)
Q Consensus 895 L~~L~Ls~N~l 905 (1066)
|++|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.66 E-value=0.011 Score=57.84 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=70.4
Q ss_pred ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcc
Q 001497 870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 949 (1066)
Q Consensus 870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls 949 (1066)
..+.||++.|++. ..-..|..++.|..||+|.|++. ..|..++++..+..+++.+|..+ ..|.++...+.++++++-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 5678999999987 45566888888999999999998 88888999999999999999888 888999999999999888
Q ss_pred cCccc
Q 001497 950 YNNLS 954 (1066)
Q Consensus 950 ~N~l~ 954 (1066)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88764
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.59 E-value=0.38 Score=29.76 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=6.3
Q ss_pred CCCEEECcCccCc
Q 001497 894 RIQTLNLSHNNLT 906 (1066)
Q Consensus 894 ~L~~L~Ls~N~l~ 906 (1066)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.59 E-value=0.38 Score=29.76 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=6.3
Q ss_pred CCCEEECcCccCc
Q 001497 894 RIQTLNLSHNNLT 906 (1066)
Q Consensus 894 ~L~~L~Ls~N~l~ 906 (1066)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.70 E-value=0.16 Score=49.07 Aligned_cols=81 Identities=27% Similarity=0.284 Sum_probs=40.8
Q ss_pred CcCEEEcCCCcccccccccchhhhccCCCccEEecCCCC-CCccchhhccC-CCCCcEEEcCCCcCCCCCChhhhcCCCC
Q 001497 94 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL-CNNSILSSVAR-LSSLTSLHLSHNILQGSIDAKEFDSLSN 171 (1066)
Q Consensus 94 ~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 171 (1066)
.++.+|-+++.|.. .|++.+.+++.++.|.+.+|. +.+.....++. .++|+.|++++|.-..+-....+.++++
T Consensus 102 ~IeaVDAsds~I~~----eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY----EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHH----HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 45566666655543 245566666666666666554 22222333333 2566666666654222333334455555
Q ss_pred ccEEEcC
Q 001497 172 LEELDIN 178 (1066)
Q Consensus 172 L~~L~L~ 178 (1066)
|+.|.+.
T Consensus 178 Lr~L~l~ 184 (221)
T KOG3864|consen 178 LRRLHLY 184 (221)
T ss_pred hHHHHhc
Confidence 5555444
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.65 E-value=0.37 Score=26.32 Aligned_cols=12 Identities=75% Similarity=0.971 Sum_probs=4.0
Q ss_pred CCEEEccCccCc
Q 001497 577 LQFLDLSNNKLT 588 (1066)
Q Consensus 577 L~~L~l~~n~l~ 588 (1066)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.32 E-value=0.46 Score=29.40 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=15.0
Q ss_pred CCCCCEEECcCCcCcccCCcccc
Q 001497 791 LNQLQLLDLSDNNLHGLIPSCFD 813 (1066)
Q Consensus 791 l~~L~~L~Ls~N~l~~~~p~~~~ 813 (1066)
+++|++|+|++|+++..++..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677777777777766555554
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.32 E-value=0.46 Score=29.40 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=15.0
Q ss_pred CCCCCEEECcCCcCcccCCcccc
Q 001497 791 LNQLQLLDLSDNNLHGLIPSCFD 813 (1066)
Q Consensus 791 l~~L~~L~Ls~N~l~~~~p~~~~ 813 (1066)
+++|++|+|++|+++..++..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677777777777766555554
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.67 E-value=0.04 Score=53.98 Aligned_cols=99 Identities=25% Similarity=0.287 Sum_probs=76.2
Q ss_pred ccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcccc
Q 001497 876 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 955 (1066)
Q Consensus 876 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g 955 (1066)
+|--.++...-.++......+.||++.|++. ..-..|+-++.++.||+|.|++. ..|..+.+...+..+++..|+++.
T Consensus 25 ~s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~ 102 (326)
T KOG0473|consen 25 LSLSELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ 102 (326)
T ss_pred CCHHHhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh
Confidence 3333445333356778889999999999998 56677888899999999999998 889999999999999999999985
Q ss_pred cCCCCccccCccCccccCCCCC
Q 001497 956 KIPEWTAQFATFNKSSYDGNPF 977 (1066)
Q Consensus 956 ~ip~~~~~~~~~~~~~~~gN~~ 977 (1066)
. |...++.........-+||+
T Consensus 103 ~-p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 103 Q-PKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred C-CccccccCCcchhhhccCcc
Confidence 4 43366666666566666764
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.86 E-value=5.5 Score=44.00 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCCCcceeeeccCCcCCCCCCcccCCCCCCCCCCcEEECCCC
Q 001497 321 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 362 (1066)
Q Consensus 321 ~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 362 (1066)
...+.+++++++++..++.+...++.+...-..++....+.|
T Consensus 437 ~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 437 LSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred ccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Confidence 344555666666665555555555544444344444433333
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.08 E-value=0.35 Score=29.24 Aligned_cols=13 Identities=46% Similarity=0.825 Sum_probs=4.7
Q ss_pred CCCEEeCCCCcCc
Q 001497 918 HIESLDLSYNKLS 930 (1066)
Q Consensus 918 ~L~~L~Ls~N~l~ 930 (1066)
+|++|||++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.24 E-value=1.7 Score=26.14 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=12.7
Q ss_pred CCCcEEecCCCccchhhHHHHh
Q 001497 247 TNLEYLTLDDSSLHISLLQSIG 268 (1066)
Q Consensus 247 ~~L~~L~L~~~~~~~~~~~~l~ 268 (1066)
++|++|+|++|.+++..+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5667777777776666555543
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.20 E-value=0.55 Score=45.60 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=40.7
Q ss_pred CccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcC-CCCccEEEcCCC-ccCchh
Q 001497 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS-LSNLEELDINDN-EIDNVE 186 (1066)
Q Consensus 122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~-l~~L~~L~L~~n-~i~~~~ 186 (1066)
.++.+|-++..|..+....+.+++.++.|.+.+|.--+....+.+++ .++|+.|++++| +|++..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 46677777777777777777777888888777775433322222322 356777777766 454443
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.80 E-value=2.5 Score=26.14 Aligned_cols=15 Identities=53% Similarity=0.771 Sum_probs=10.6
Q ss_pred CCCCCEEeCCCCcCc
Q 001497 916 LRHIESLDLSYNKLS 930 (1066)
Q Consensus 916 l~~L~~L~Ls~N~l~ 930 (1066)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 89
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=68.91 E-value=2.2 Score=29.28 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=10.1
Q ss_pred eeehhhhHhhHhhhhhhhhcchhhhH
Q 001497 1013 ITFTISYVIVIFGIVVVLYVNPYWRR 1038 (1066)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1066)
++++++.-+++++++..+++..||||
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEec
Confidence 33333333333333333334444554
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.69 E-value=4.9 Score=24.80 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=6.3
Q ss_pred CCCEEECcCccCc
Q 001497 894 RIQTLNLSHNNLT 906 (1066)
Q Consensus 894 ~L~~L~Ls~N~l~ 906 (1066)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555544
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.62 E-value=2.8 Score=56.78 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=25.4
Q ss_pred eCCCCcCccccCccccCCCCCCEEEcccCccccc
Q 001497 923 DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 956 (1066)
Q Consensus 923 ~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ 956 (1066)
||++|+|+..-+..|..+.+|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6888888866667777888888888776666543
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.04 E-value=14 Score=23.23 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=14.6
Q ss_pred CCCcEEecCCCccchhhHHHHhh
Q 001497 247 TNLEYLTLDDSSLHISLLQSIGS 269 (1066)
Q Consensus 247 ~~L~~L~L~~~~~~~~~~~~l~~ 269 (1066)
++|++|+|++|.+.......+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45777777777776655555543
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.62 E-value=76 Score=35.62 Aligned_cols=142 Identities=14% Similarity=0.023 Sum_probs=72.8
Q ss_pred CCCCcEEeccCCcccccccccccccCCCCCcEEecCCCccchhhHHHHh--hhCCCCcEEeccCCcccccccCCC--Ccc
Q 001497 220 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIG--SIFPSLKNLSMSGCEVNGVLSGQG--FPH 295 (1066)
Q Consensus 220 l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~--~~l~~L~~L~l~~~~~~~~~~~~~--~~~ 295 (1066)
-+.+++++++.|.+....+..-.-..++ +.++.|..+......+. +.-..+++++++.+.....++... ...
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhh
Confidence 3556667777666654443211111112 45555655544333221 112357777888777665555321 111
Q ss_pred ccccccccchhhHhhhccchhhhhcCCCCcceeeeccCCcCCC----CCCcccCCCCCCCCCCcEEECCCCcccc
Q 001497 296 FKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT----NSSRILDQGLCPLAHLQELYIDNNDLRG 366 (1066)
Q Consensus 296 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 366 (1066)
-..+++++.+...+..+..|-.........+...+++.+.... .+.....+.+..-+++ .|++..+....
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~ps 313 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPS 313 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCch
Confidence 2335666777666666666666666666666666666554322 2222233345555566 66666665443
No 94
>PF15102 TMEM154: TMEM154 protein family
Probab=49.75 E-value=8.6 Score=35.33 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=11.5
Q ss_pred hhhHhhHhhhhhhhhcchhhhH
Q 001497 1017 ISYVIVIFGIVVVLYVNPYWRR 1038 (1066)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~ 1038 (1066)
+.+++++++++++++++||||.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 4444444455555555566665
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.05 E-value=12 Score=33.63 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=7.2
Q ss_pred hhhhHhhHhhhhhhhhcc
Q 001497 1016 TISYVIVIFGIVVVLYVN 1033 (1066)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~ 1033 (1066)
++|+++++++++++++|.
T Consensus 70 i~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.83 E-value=29 Score=39.58 Aligned_cols=82 Identities=27% Similarity=0.334 Sum_probs=42.3
Q ss_pred ceeeEeecCCCccccccchhhhccCCCCCcEEeccCC--cccccccccccccCCCCCcEEecCCCccchh------hHHH
Q 001497 195 RKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN--NFTATLTTTQELHNFTNLEYLTLDDSSLHIS------LLQS 266 (1066)
Q Consensus 195 ~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~--~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~------~~~~ 266 (1066)
+.+..+.+++|....+...-......|+|+.|+|++| .+..... ...++ ...|++|-+.+|++... ....
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k-~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLK-GLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhc-CCCHHHeeecCCccccchhhhHHHHHH
Confidence 3445555556655555444434445577777777776 2222111 11111 23466777777776433 2234
Q ss_pred HhhhCCCCcEEe
Q 001497 267 IGSIFPSLKNLS 278 (1066)
Q Consensus 267 l~~~l~~L~~L~ 278 (1066)
+...+|+|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 445577776664
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.35 E-value=20 Score=40.87 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=15.9
Q ss_pred CCCCCcEEeccCCcccccccccccccCCCCCcEEecCCC
Q 001497 219 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 257 (1066)
Q Consensus 219 ~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 257 (1066)
+.+.+..+.+++|++.........-...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 334444455555544333222222223344444444444
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.93 E-value=31 Score=47.58 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=26.3
Q ss_pred EccCCcccCcCCcCCCCCCCCCEEECcCccCc
Q 001497 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 906 (1066)
Q Consensus 875 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 906 (1066)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68888888777777888888888888888776
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.35 E-value=18 Score=22.22 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=7.0
Q ss_pred CCCCcEEECCCCc
Q 001497 20 LSSLRSLYLSDNR 32 (1066)
Q Consensus 20 ~~~L~~L~l~~~~ 32 (1066)
+++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3455555555553
No 100
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=27.92 E-value=52 Score=32.52 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=12.6
Q ss_pred ceeeeeehhhhHhhHhhhhhhhhcchhhh
Q 001497 1009 DSFFITFTISYVIVIFGIVVVLYVNPYWR 1037 (1066)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1066)
..++++++.|.+++++++++++++ |++|
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~v-R~CR 64 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLV-RYCR 64 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHH-HHHh
Confidence 334455545544444444444333 4344
No 101
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=27.10 E-value=19 Score=31.94 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=19.9
Q ss_pred hhhHhhHhhhhhhhhcchhhhHHHHHHHHH
Q 001497 1017 ISYVIVIFGIVVVLYVNPYWRRRWLYLVEM 1046 (1066)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1066)
+++.+++.+.++..+++||.|++++-+-|.
T Consensus 107 l~il~~i~is~~~~~~yr~~r~~~~~~~~~ 136 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTRRTKLPLQDM 136 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeecccCchhhc
Confidence 444555556666777888888888765443
No 102
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.82 E-value=33 Score=29.56 Aligned_cols=7 Identities=14% Similarity=0.377 Sum_probs=2.6
Q ss_pred eehhhhH
Q 001497 1014 TFTISYV 1020 (1066)
Q Consensus 1014 ~~~~~~~ 1020 (1066)
+++++.+
T Consensus 70 gi~vg~~ 76 (96)
T PTZ00382 70 GISVAVV 76 (96)
T ss_pred EEEeehh
Confidence 3333333
No 103
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=23.52 E-value=91 Score=21.56 Aligned_cols=9 Identities=22% Similarity=0.874 Sum_probs=4.0
Q ss_pred hcchhhhHH
Q 001497 1031 YVNPYWRRR 1039 (1066)
Q Consensus 1031 ~~~~~~~~~ 1039 (1066)
+.+|+|..+
T Consensus 28 ~iYRKw~aR 36 (43)
T PF08114_consen 28 FIYRKWQAR 36 (43)
T ss_pred HHHHHHHHH
Confidence 334555443
No 104
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.39 E-value=21 Score=33.20 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=2.9
Q ss_pred ehhhhHhh
Q 001497 1015 FTISYVIV 1022 (1066)
Q Consensus 1015 ~~~~~~~~ 1022 (1066)
+++|..++
T Consensus 56 VGVGg~il 63 (154)
T PF04478_consen 56 VGVGGPIL 63 (154)
T ss_pred ecccHHHH
Confidence 33333333
Done!