Query 001497
Match_columns 1066
No_of_seqs 475 out of 4800
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 17:01:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001497.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_797-801//hhsearch_pdb/001497hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 604.5 51.5 123 868-991 631-753 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 557.6 48.8 663 88-956 72-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 472.3 51.6 175 739-958 449-626 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 466.3 51.1 204 733-989 419-634 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 444.0 44.5 297 600-958 266-564 (844)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 436.5 39.7 514 352-984 24-566 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 420.7 46.5 88 870-958 477-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 418.2 40.2 281 620-984 281-564 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 411.5 46.0 516 353-984 34-566 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 405.8 43.5 276 598-959 283-563 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=604.54 Aligned_cols=123 Identities=43% Similarity=0.702 Sum_probs=116.7
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 25665698558812676984777989888897857637545421101999999785978738533680100897787787
Q 001497 868 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 947 (1066)
Q Consensus 868 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 947 (1066)
++.|+.||+++|+++|.+|..|+.++.|+.|+|++|+++|.+|..|+.+++|+.|||++|+++|.+|..+..+++|+.+|
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 35665797858801555877884141578784868803887896784777899898978802386886775788789787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56673633699875245766854457887898899989987688
Q 001497 948 VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLAT 991 (1066)
Q Consensus 948 ls~N~l~~~~p~~~~~~~~~~~~~~~~N~~~c~~~l~~c~~~~~ 991 (1066)
+++|+++|.||. ..+|.+|...+|.|||.+||.|+..|....+
T Consensus 711 ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~ 753 (768)
T 3rgz_A 711 LSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753 (768)
T ss_dssp CCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSCCCCSCC-
T ss_pred CCCCCCCCCCCC-CHHHCCCCHHHHCCCCHHCCCCCCCCCCCCC
T ss_conf 968815560899-6010248977756983210887767888766
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=557.61 Aligned_cols=663 Identities=29% Similarity=0.400 Sum_probs=341.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH--HCCCCCCCCEEECCCCCCCCCCCHHH
Q ss_conf 2368887678986898456524443013210489864996589878963011--00179977699858985779778332
Q 001497 88 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILS--SVARLSSLTSLHLSHNILQGSIDAKE 165 (1066)
Q Consensus 88 ~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~L~~~~l~~~~~~~~ 165 (1066)
.+..+++|+.++++.+.+...+ ..++.+++|++|++++|.+.+..+. .++++++|++|++++|.+.+..+...
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 146 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 146 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCS
T ss_pred HHHCCCCCCCCCCCCCCCCCCC-----HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 5731680224678688867870-----33245788998989898578707896787278899989896882677479778
Q ss_pred HCCCCCCCEEECCCCCCCCHHHCCC--CCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 2389983299768986673000023--34642245841279754455302221168999748733688643432200001
Q 001497 166 FDSLSNLEELDINDNEIDNVEVSRG--YRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQEL 243 (1066)
Q Consensus 166 l~~l~~L~~L~L~~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l 243 (1066)
+.++++|++|++++|.+++..+..+ +..+..++.|+++++.+.... ....+++|++|++++|.+.+..+ . +
T Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~--~-l 219 (768)
T 3rgz_A 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV----DVSRCVNLEFLDVSSNNFSTGIP--F-L 219 (768)
T ss_dssp CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC----BCTTCTTCCEEECCSSCCCSCCC--B-C
T ss_pred HCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC----CCCCCCCCCEEECCCCCCCCCCC--C-C
T ss_conf 563889998989798358858715566435898898989788034657----84547868989892882788771--1-1
Q ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHCCCC
Q ss_conf 47788737733788662205777853189986893568702354569998666643101020237640321023303777
Q 001497 244 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 323 (1066)
Q Consensus 244 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 323 (1066)
+.+++|++|++++|.+....+..+.. +++|+.|++++|.+.+.++.
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~--------------------------------- 265 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP--------------------------------- 265 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCC---------------------------------
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHC-CCCCCEEECCCCCCCCCCCC---------------------------------
T ss_conf 26999998979488587816577744-88889898988866571672---------------------------------
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8620221038767998886567777789987499877996410145000189-988489623473757789733458999
Q 001497 324 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT-TSLRILDVSFNQLTGSISSSPLVHLTS 402 (1066)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~l~~~~l~~l~~ 402 (1066)
..+++|++|++++|.+.+.+|..+... ++|+.|++++|.+++.+ +..+..+++
T Consensus 266 -------------------------~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~ 319 (768)
T 3rgz_A 266 -------------------------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSL 319 (768)
T ss_dssp -------------------------CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-CGGGGGCTT
T ss_pred -------------------------CCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC-CHHHHCCCC
T ss_conf -------------------------436878989791785577258888844686889989689677842-367755877
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 97998426854466794122389885299667974443335557888863110997347789986667000167873599
Q 001497 403 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 482 (1066)
Q Consensus 403 L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L 482 (1066)
|++|++++|.+.+.++...+.++++|+.+++++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n---------------------------------------------- 353 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN---------------------------------------------- 353 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS----------------------------------------------
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCC----------------------------------------------
T ss_conf 6677897885257379788724888878848478----------------------------------------------
Q ss_pred ECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCHHHHHC-CCCCCEEECCC
Q ss_conf 94898572247646653399773997368866576878988999-82499833883664588255521-99984998558
Q 001497 483 ELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFLDVSNNNFQGHIPVEIGDI-LPSLVYFNISM 560 (1066)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~ 560 (1066)
.+.+..+..+..++ +|+.|++++|.+.+.++..+... +++|++|++++
T Consensus 354 ------------------------------~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 354 ------------------------------EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ------------------------------EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ------------------------------CCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCC
T ss_conf ------------------------------43762309898632277199862787478767666533247761898977
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 83641378454586557899833762766458566635999979984376364335200138877774764585044447
Q 001497 561 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 640 (1066)
Q Consensus 561 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 640 (1066)
|.+++..|..+..+++|+.|++++|++.+.+|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH-HCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 84654248777568987989895884668546777-44998898989788154718978828777329990199513758
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-C
Q ss_conf 977789999958985568588888933459999868983499334899811149999979975377153238988778-7
Q 001497 641 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP-L 719 (1066)
Q Consensus 641 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~ 719 (1066)
|..+..+++|+.|++++|++.+.+|.+++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.. .
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 87881699899897539951896876885689999898978943374887770889899898988846882795786042
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
Q ss_conf 42589848970511158663369999629992082166555332107999898967678265457721216899989987
Q 001497 720 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799 (1066)
Q Consensus 720 ~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 799 (1066)
.+..+.+........+...............+ .+.+..+..+..++.+..+++..|.+.+..|..+..+++|++||+
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLL---EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE---ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEEC
T ss_conf 12232013454211113444322223322210---013556323200232110011331004627433403356657978
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 58848655885434776433357999999998543345899984235465421110233100112110256656985588
Q 001497 800 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 879 (1066)
Q Consensus 800 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 879 (1066)
++|+++|.+|..++.+. .|+.|+|++|
T Consensus 640 s~N~l~g~ip~~l~~l~-----------------------------------------------------~L~~L~Ls~N 666 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMP-----------------------------------------------------YLFILNLGHN 666 (768)
T ss_dssp CSSCCBSCCCGGGGGCT-----------------------------------------------------TCCEEECCSS
T ss_pred CCCCCCCCCCHHHHCCC-----------------------------------------------------CCCEEECCCC
T ss_conf 58801555877884141-----------------------------------------------------5787848688
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCC
Q ss_conf 126769847779898888978576375454211019999997859787385336801008977877875667-36336
Q 001497 880 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN-NLSGK 956 (1066)
Q Consensus 880 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N-~l~~~ 956 (1066)
.++|.+|..|+.+++|+.|||++|+++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+....+.+| .++|.
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCCC
T ss_conf 038878967847778998989788023868867757887897879688155608996-01024897775698321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=472.33 Aligned_cols=175 Identities=25% Similarity=0.253 Sum_probs=90.8
Q ss_pred CCCCCCCCCEEECCCCCCC--CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 3369999629992082166--55533210799989896767826545772121689998998758848655885434776
Q 001497 739 TFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816 (1066)
Q Consensus 739 ~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 816 (1066)
.|..+++|+.|++++|.+. +..|.+|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+....
T Consensus 449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred HHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCC
T ss_conf 55007543101101464422566776455578789998999987767944634553468885889973000000046774
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43335799999999854334589998423546542111023310011211025665698558812676984777989888
Q 001497 817 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ 896 (1066)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 896 (1066)
......++.|+.|++++|.++...+..|.++++|+
T Consensus 529 ---------------------------------------------~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 529 ---------------------------------------------IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp ---------------------------------------------CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ---------------------------------------------CHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf ---------------------------------------------14233799888888999978877977734666752
Q ss_pred EEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCC
Q ss_conf 897857637545421101999999785978738533680100-89778778756673633699
Q 001497 897 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV-DLNTLAIFIVAYNNLSGKIP 958 (1066)
Q Consensus 897 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~ls~N~l~~~~p 958 (1066)
.|++++|+++++.+..|..+++|+.|++++|++++..|..+. .+++|+.+++++|++.+.++
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 238999977767976837898888898999968705966830114665779831897025776
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=466.27 Aligned_cols=204 Identities=21% Similarity=0.234 Sum_probs=110.5
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC--CCCCHHHHCCCCCCEEECCCCCCCCCCCC
Q ss_conf 1158663369999629992082166555332107999898967678265--45772121689998998758848655885
Q 001497 733 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSDNNLHGLIPS 810 (1066)
Q Consensus 733 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 810 (1066)
+.++...|.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..+.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 43575532575461278448997542276455007543101101464422566776455578789998999987767944
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC----
Q ss_conf 4347764333579999999985433458999842354654211102331001121102566569855881267698----
Q 001497 811 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP---- 886 (1066)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---- 886 (1066)
.|..+. .|+.|++++|.+++..+
T Consensus 499 ~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 499 MLEGLE-----------------------------------------------------KLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TTTTCT-----------------------------------------------------TCCEEECCSSCCGGGGSTTST
T ss_pred HHCCCC-----------------------------------------------------CCCEEECCCCCCCCCCHHHCC
T ss_conf 634553-----------------------------------------------------468885889973000000046
Q ss_pred ----CCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf ----4777989888897857637545421101999999785978738533680100897787787566736336998752
Q 001497 887 ----PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTA 962 (1066)
Q Consensus 887 ----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~ 962 (1066)
..|..+++|+.|+|++|+++.+.+..|.++++|+.|++++|++++..+..|..++.|+.+++++|++++.+|....
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHC
T ss_conf 77414233799888888999978877977734666752238999977767976837898888898999968705966830
Q ss_pred -CCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf -457668544578878988999-899876
Q 001497 963 -QFATFNKSSYDGNPFLCGLPL-PICRSL 989 (1066)
Q Consensus 963 -~~~~~~~~~~~~N~~~c~~~l-~~c~~~ 989 (1066)
.+..+...++.+|||.|+|+. .|...|
T Consensus 606 ~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp HHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred CCCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 11466577983189702577668999999
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=444.01 Aligned_cols=297 Identities=24% Similarity=0.171 Sum_probs=138.9
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 99979984376364335200138877774764585044447977789999958985568588888933459999868983
Q 001497 600 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 679 (1066)
Q Consensus 600 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 679 (1066)
++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 78618989799455158634525899999989798189879688368889998989899788518788468999998989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 49933489981114999997997537715323898877874258984897051115866336999962999208216655
Q 001497 680 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 759 (1066)
Q Consensus 680 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 759 (1066)
++|.+....+..|.++++|+.|++++|.+++... .++++.+++++|.+. .+|. ...+++.+++++|.+++.
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~----~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPK----INLTANLIHLSENRLENL 416 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCC----CCTTCCEEECCSCCCCSS
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC----CCCCCHHCCCCCCCC-CCCC----CCCCCCEEECCCCCCCCC
T ss_conf 8998776286661378889998898997786168----898232005899723-1455----455431221456753457
Q ss_pred C-CHHHHCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5-33210799989896767826545772-121689998998758848655885434776433357999999998543345
Q 001497 760 I-PDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 837 (1066)
Q Consensus 760 ~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1066)
. +..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.++...+..+....
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~--------------------- 475 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV--------------------- 475 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC---------------------
T ss_pred CHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH---------------------
T ss_conf 55666512776666667787125555433356687310024777736441013553555---------------------
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCC
Q ss_conf 89998423546542111023310011211025665698558812676984777989888897857637545421101999
Q 001497 838 SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR 917 (1066)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 917 (1066)
...++.|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+. +
T Consensus 476 ---------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 476 ---------------------------FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A 526 (844)
T ss_dssp ---------------------------SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred ---------------------------HCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--C
T ss_conf ---------------------------44755365777889856553955704501221569999978745710110--0
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99978597873853368010089778778756673633699
Q 001497 918 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 958 (1066)
Q Consensus 918 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p 958 (1066)
+|+.|++++|++++.+|..+. .|+.+++++|++.+.++
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred CCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCC
T ss_conf 455888988847888966837---76889931997025366
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=436.47 Aligned_cols=514 Identities=21% Similarity=0.219 Sum_probs=309.2
Q ss_pred CCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 98749987799641014500018998848962347375778973345899997998426854466794122389885299
Q 001497 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 431 (1066)
Q Consensus 352 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l 431 (1066)
++++.|++++|.+.+..+..|..+++|+.|++++|...+.+++..+.++++|++|++++|.+.+. ...+|.++++|+.+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCE
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-CHHHCCCCCCCCEE
T ss_conf 98688888778678329667766213708867899774441977853787788887989958531-97671578665870
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 66797444333555788886311099734778998666700016787359994898572247646653399773997368
Q 001497 432 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 511 (1066)
Q Consensus 432 ~l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 511 (1066)
++++|.+.+...... .+..+++|+.|++++
T Consensus 103 ~Ls~n~l~~~~~~~~--------------------------------------------------~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDG--------------------------------------------------YFRNLKALTRLDLSK 132 (844)
T ss_dssp ECTTCCCSSCCSTTC--------------------------------------------------CCSSCSSCCEEEEES
T ss_pred ECCCCCCCCCCCCCC--------------------------------------------------CCCCCCCCCEEECCC
T ss_conf 176788973404676--------------------------------------------------455667999888987
Q ss_pred CCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHHCC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEEC
Q ss_conf 86657687-8988999824998338836645882555219--99849985588364137845458655------789983
Q 001497 512 DSLAGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL--PSLVYFNISMNALDGSIPSSFGNVIF------LQFLDL 582 (1066)
Q Consensus 512 n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~------L~~L~l 582 (1066)
|.+.+..+ ..+..+++|+.|++++|.+.+..+..+.. + ++|+.|+++.|.+.+..+..+..+.. |+.|++
T Consensus 133 N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 211 (844)
T 3j0a_A 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211 (844)
T ss_dssp CCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred CCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCC-CCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEC
T ss_conf 86423256655763889898989898477667887535-56775035789788666554553322377223574007965
Q ss_pred CCCCCCCCCCHHHHHC--CCCCCEEECC---------CCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 3762766458566635--9999799843---------763643352001388--77774764585044447977789999
Q 001497 583 SNNKLTGEIPDHLAMC--CVNLEFLSLS---------NNSLKGHIFSRIFSL--RNLRWLLLEGNHFVGEIPQSLSKCSS 649 (1066)
Q Consensus 583 ~~n~l~~~~~~~~~~~--~~~L~~L~l~---------~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~ 649 (1066)
++|.+.+.++..+... ...++.+.+. .+.+.......|.++ ++|+.|++++|.+.+..+..+..+++
T Consensus 212 s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 291 (844)
T 3j0a_A 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291 (844)
T ss_dssp SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCC
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 78868656778887642744100112121223466444566889855652555478618989799455158634525899
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCC
Q ss_conf 95898556858888893345999986898349933489981114999997997537715323898877-87425898489
Q 001497 650 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSK 728 (1066)
Q Consensus 650 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~l~~l~l~~ 728 (1066)
|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+....+..+. ..+|+.+++++
T Consensus 292 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 99998979818987968836888999898989978851878846899999898989987762866613788899988989
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCC
Q ss_conf 705111586633699996299920821665553321079998989676782654577-2121689998998758848655
Q 001497 729 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGL 807 (1066)
Q Consensus 729 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 807 (1066)
|.+. .+..+++|+.+++++|.++. +|.. ..+++.|++++|.+.+... ..+..+++|+.|++++|++++.
T Consensus 372 N~l~------~i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 372 NALT------TIHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp CCSC------CCSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred CCCC------CCCCCCCCCHHCCCCCCCCC-CCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 9778------61688982320058997231-4554---554312214567534575566651277666666778712555
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCC-----
Q ss_conf 885434776433357999999998543345899984235465421110233100112110256656985588126-----
Q 001497 808 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV----- 882 (1066)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----- 882 (1066)
.+..... .++.|+.|++++|.++
T Consensus 442 ~~~~~~~----------------------------------------------------~~~~L~~L~Ls~N~l~~~~~~ 469 (844)
T 3j0a_A 442 SGDQTPS----------------------------------------------------ENPSLEQLFLGENMLQLAWET 469 (844)
T ss_dssp CSSSSSC----------------------------------------------------SCTTCCBCEEESCCCSSSCCS
T ss_pred CCCCCCC----------------------------------------------------CCCCCCCCCCCCCCCCCCCCC
T ss_conf 5433356----------------------------------------------------687310024777736441013
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 76984777989888897857637545421101999999785978738533680100897787787566736336998752
Q 001497 883 GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTA 962 (1066)
Q Consensus 883 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~ 962 (1066)
+..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+. +.|+.+++++|++++.+|..
T Consensus 470 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-- 545 (844)
T 3j0a_A 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-- 545 (844)
T ss_dssp CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--
T ss_conf 55355544755365777889856553955704501221569999978745710110--04558889888478889668--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4576685445788789889998
Q 001497 963 QFATFNKSSYDGNPFLCGLPLP 984 (1066)
Q Consensus 963 ~~~~~~~~~~~~N~~~c~~~l~ 984 (1066)
+..+...++.+||+.|+|++.
T Consensus 546 -~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 546 -FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp -CSSCCEEEEEEECCCCSSSCC
T ss_pred -HCCCCEEEECCCCCCCCCCCH
T ss_conf -377688993199702536618
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=420.73 Aligned_cols=88 Identities=27% Similarity=0.241 Sum_probs=45.8
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 66569855881267698477798988889785763754542110199999978597873853368010089778778756
Q 001497 870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 949 (1066)
Q Consensus 870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls 949 (1066)
.|+.|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++| .|++++|++++..|..+..++.|+.++++
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECC
T ss_conf 76688799996670686463265678889898980686896684756651-89876894142687662567787889677
Q ss_pred CCCCCCCCC
Q ss_conf 673633699
Q 001497 950 YNNLSGKIP 958 (1066)
Q Consensus 950 ~N~l~~~~p 958 (1066)
+|++.+.++
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCCCCCCC
T ss_conf 998616677
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=418.24 Aligned_cols=281 Identities=23% Similarity=0.231 Sum_probs=136.6
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13887777476458504444797778999995898556858888893345999986898349933489981114999997
Q 001497 620 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 699 (1066)
Q Consensus 620 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 699 (1066)
+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+ +.+|. + .+++|+.|++++|...+.. .+..+++|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 353 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLS 353 (606)
T ss_dssp CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCC
T ss_pred CCCCCCCCEEEECCCCCH-HHH-HCCCCCCCCEEECCCCCC-CCCCC-C-CCCCCCEEECCCCCCCCCH--HHCCCCCCC
T ss_conf 354887898771476604-435-433401177897646667-65466-7-8875564454478685310--002489888
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
Q ss_conf 99753771532389887787425898489705111586633699996299920821665553321079998989676782
Q 001497 700 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 779 (1066)
Q Consensus 700 ~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 779 (1066)
.|++++|.+.+.. .++. .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.
T Consensus 354 ~L~ls~n~l~~~~---------------------~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 354 YLDLSRNALSFSG---------------------CCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEECCSSCEEEEE---------------------ECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred EEECCCCCCCCCC---------------------CHHH-HHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCC
T ss_conf 7977587368775---------------------2012-21467755486788995300-05540688888965898870
Q ss_pred CCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 654577-2121689998998758848655885434776433357999999998543345899984235465421110233
Q 001497 780 LEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 858 (1066)
Q Consensus 780 l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (1066)
+.+..+ ..+..+++|++|++++|.+++..|..+..++
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------------------ 448 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT------------------------------------------ 448 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT------------------------------------------
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCC------------------------------------------
T ss_conf 58753764564621378898968978743355534778------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 1001121102566569855881267-698477798988889785763754542110199999978597873853368010
Q 001497 859 IAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 937 (1066)
Q Consensus 859 ~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 937 (1066)
.|+.|++++|.+++ .+|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++.+|..+
T Consensus 449 -----------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 449 -----------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp -----------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred -----------CCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHC
T ss_conf -----------789898989837985467760457889989898885776486561546468989898995787487770
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 0897787787566736336998752457-6685445788789889998
Q 001497 938 VDLNTLAIFIVAYNNLSGKIPEWTAQFA-TFNKSSYDGNPFLCGLPLP 984 (1066)
Q Consensus 938 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~-~~~~~~~~~N~~~c~~~l~ 984 (1066)
..++.|+.+++++|+++. +|.....+. .+...++.+||+.|+|++.
T Consensus 518 ~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCCCCEEECCCCCCCC-CCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 688768988898983766-68767521021748876289866477648
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=411.53 Aligned_cols=516 Identities=22% Similarity=0.206 Sum_probs=281.2
Q ss_pred CCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 87499877996410145000189988489623473757789733458999979984268544667941223898852996
Q 001497 353 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 432 (1066)
Q Consensus 353 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~ 432 (1066)
.++.|++++|.+.+..+..|..+++|++|++++|.+.+ +.+..|.++++|++|++++|.+.+.. ...+.++++|+.++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEEC-TTTTSSCTTCCEEE
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCE-ECHHHCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCCEEE
T ss_conf 67589815873471796672567665289788983552-48511368433676448898565458-65523442153765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCC
Q ss_conf 67974443335557888863110997347789986667000167873599948985722476466533997739973688
Q 001497 433 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 512 (1066)
Q Consensus 433 l~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 512 (1066)
+++|.+.+.... . +..+++|+.|++++|
T Consensus 112 L~~n~i~~l~~~---------------------------------------------------~-~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 112 FIQTGISSIDFI---------------------------------------------------P-LHNQKTLESLYLGSN 139 (606)
T ss_dssp CTTSCCSCGGGS---------------------------------------------------C-CTTCTTCCEEECCSS
T ss_pred CCCCCCCCCCCC---------------------------------------------------H-HCCCCCCCEEECCCC
T ss_conf 212676657810---------------------------------------------------1-223782238988798
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 665768789889998249983388366458825552199984--998558836413784545865578998337627664
Q 001497 513 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV--YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590 (1066)
Q Consensus 513 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 590 (1066)
.+.+.....+..+++|+.|++++|.+++ ++...+..+++|+ .+++++|.+++..+..|.. ..|+.+++++|..
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~--- 214 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN--- 214 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCC-CCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHH---
T ss_conf 3411476545687656877765684455-4965633221564038966798147548667300-1001355677266---
Q ss_pred CCHHHHHCCCCCCEEECCCCCCC-----CCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 58566635999979984376364-----33520013887--777476458504444797778999995898556858888
Q 001497 591 IPDHLAMCCVNLEFLSLSNNSLK-----GHIFSRIFSLR--NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK 663 (1066)
Q Consensus 591 ~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 663 (1066)
++.. +..+..+....+....+. ...+..+..+. +++.|++++|.+.+..+..|..+++|++|++++|.+. .
T Consensus 215 ~~~~-~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 292 (606)
T 3t6q_A 215 LLVI-FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292 (606)
T ss_dssp HHHH-HHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred HHHH-HHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-C
T ss_conf 7777-6513356442200201102641226866743032075059994457658557777445667888956288267-7
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-C-CCCCCCEEECCCCCCCCCC--CCCC
Q ss_conf 8933459999868983499334899811149999979975377153238988-7-7874258984897051115--8663
Q 001497 664 IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC-F-YPLSIKQVHLSKNMLHGQL--KEGT 739 (1066)
Q Consensus 664 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~-~~~~l~~l~l~~n~~~~~~--~~~~ 739 (1066)
+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. + ...+++.+++++|.+.+.. +. .
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~ 371 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-Q 371 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-T
T ss_pred CCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCH-H
T ss_conf 782141654688897716876867602330157689888989974443462455066758988788996664567522-1
Q ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 36999962999208216655533210799989896767826545772-12168999899875884865588543477643
Q 001497 740 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 818 (1066)
Q Consensus 740 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 818 (1066)
+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++..|..+..++
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-- 449 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-- 449 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT--
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCC--
T ss_conf 056788898989899677578887347745776878888677756521241765588898989855776877873788--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCC
Q ss_conf 335799999999854334589998423546542111023310011211025665698558812676---98477798988
Q 001497 819 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH---IPPQIGNLTRI 895 (1066)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L 895 (1066)
.|++|++++|.+++. .+..+..+++|
T Consensus 450 ---------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 450 ---------------------------------------------------ALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp ---------------------------------------------------TCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred ---------------------------------------------------CCCEEECCCCCCCCCCCCCCHHHCCCCCC
T ss_conf ---------------------------------------------------78889898998885434543124048876
Q ss_pred CEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88978576375454211019999997859787385336801008977877875667363369987524576685445788
Q 001497 896 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 975 (1066)
Q Consensus 896 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~N 975 (1066)
+.|++++|++++..|..|..+++|+.|++++|++++..|..+..++.| .+++++|++++.+|.....+..+...++.+|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCC
T ss_conf 688799996670686463265678889898980686896684756651-8987689414268766256778788967799
Q ss_pred CCCCCCCCC
Q ss_conf 789889998
Q 001497 976 PFLCGLPLP 984 (1066)
Q Consensus 976 ~~~c~~~l~ 984 (1066)
|+.|+|+..
T Consensus 558 ~~~c~c~~~ 566 (606)
T 3t6q_A 558 PLDCTCSNI 566 (606)
T ss_dssp CEECSGGGH
T ss_pred CCCCCCCCH
T ss_conf 861667757
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=405.82 Aligned_cols=276 Identities=25% Similarity=0.237 Sum_probs=180.9
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 59999799843763643352001388777747645850444479777899999589855685888889334599998689
Q 001497 598 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI 677 (1066)
Q Consensus 598 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 677 (1066)
.+++|+.+++++|.+... + .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|+.|
T Consensus 283 ~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp GGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred CCCCCCEEEECCCCCHHH-H-HCCCCCCCCEEECCCCCC-CCCC-CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEE
T ss_conf 488789877147660443-5-433401177897646667-6546-67-8875564454478685310--00248988879
Q ss_pred ECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 8349933489--98111499999799753771532389887787425898489705111586633699996299920821
Q 001497 678 VMPKNHLEGP--IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 755 (1066)
Q Consensus 678 ~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~ 755 (1066)
++++|.+.+. .+..+..+++|+.|++++|.+.+ ++. .+..+++|+.|++++|.
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------~~~-~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII------------------------MSA-NFMGLEELQHLDFQHST 410 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE------------------------ECC-CCTTCTTCCEEECTTSE
T ss_pred ECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC------------------------CHH-HCCCCCCCCEEECCCCC
T ss_conf 77587368775201221467755486788995300------------------------055-40688888965898870
Q ss_pred CCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 665553-321079998989676782654577212168999899875884865-588543477643335799999999854
Q 001497 756 LNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKT 833 (1066)
Q Consensus 756 l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1066)
+.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..|..++
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~----------------- 473 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT----------------- 473 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----------------
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC-----------------
T ss_conf 587537645646213788989689787433555347787898989898379854677604578-----------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHC
Q ss_conf 33458999842354654211102331001121102566569855881267698477798988889785763754542110
Q 001497 834 SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 913 (1066)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 913 (1066)
.|+.|++++|.+++..|..|..+++|+.|++++|++++.+|..|
T Consensus 474 ------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 474 ------------------------------------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp ------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred ------------------------------------CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHC
T ss_conf ------------------------------------89989898885776486561546468989898995787487770
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCC
Q ss_conf 1999999785978738533680100897-787787566736336998
Q 001497 914 SNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNLSGKIPE 959 (1066)
Q Consensus 914 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~l~ls~N~l~~~~p~ 959 (1066)
..+++|+.|++++|+++ .+|..+..++ .|+.+++++|++.+.++.
T Consensus 518 ~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 68876898889898376-66876752102174887628986647764
Done!