BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001500
(1066 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q556Z3|TPC10_DICDI Trafficking protein particle complex subunit 10 OS=Dictyostelium
discoideum GN=trapcc10-1 PE=3 SV=1
Length = 1442
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 35 FALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDD---EAAL 91
F +E LA ++E A L+EDAL +Y ELE+ + + N + + V + + +
Sbjct: 326 FFFIKEGLALIYERAQLYEDALMQYFELEVLFGDPNNRSQFDQITDEVLQPNSIHCNGNI 385
Query: 92 LNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQ 151
L+ K +++ ++ F+F+ YLFA QSKLLF L +P E A++ FI S S + Q
Sbjct: 386 LDTSFKNYRKLIYENKISLFDFKVYLFARQSKLLFLLQKPIEAATKSISFITSMSMIIKQ 445
Query: 152 HEDILPFCMREVWVITACLALIDATSSQYN 181
+ + +E W+ + + LI A ++
Sbjct: 446 YPNSFAPMFKESWIFSTSMELIKACQDSFD 475
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 20/322 (6%)
Query: 368 SLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVC 427
SL S ++F Q Y EL Y S R L IA + FK + A ++ +
Sbjct: 694 SLQSSKQFTQLYFELLGQIEKLYIQSNRMRSISRLTFAIANLNFKLKEFQIAENLFKSIS 753
Query: 428 ALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTK-ERQAFQSEV 486
LYS E W + V L+ CQK L Y+ +CV LL+ GL + + E+ + SE+
Sbjct: 754 NLYSREHWSYIEYAVKTRLSYCQKQLGHLVDYVTTCVGLLA--PGLLTNRFEKDHYLSEI 811
Query: 487 ISLA----YGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDT 542
I ++ ++ +PL +TF E ++V + S I +
Sbjct: 812 IQISRKPELNIVQPMIPL-FKCKVTFKETVYRYFETIK-----INVRIKSNLISPIRFNN 865
Query: 543 LSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFR 602
+++ + + D+ LN +++PG N ++V ++ I L F
Sbjct: 866 GAVSFVKSGFGDKLVFQLND---FLVEPGVNNFQFTAVGTTKATFVKDSIWLKIDNLSF- 921
Query: 603 SHSFSKVGPADSDDFMSYEKPTRPI---LKVFNPRPLVDLAAAISSPLLINEAQWVGIIV 659
+S A T + +KV + + L + +SPLL Q+VGI +
Sbjct: 922 GYSLRNADTAIGGGGGGTNTTTTTLPGEIKVIDSESQITLESFANSPLLFYSIQYVGIKL 981
Query: 660 QPIDYSLKGAILQIDTGPGLTI 681
+++ +L + G TI
Sbjct: 982 HTHSDTIEAGVLTFTSPTGATI 1003
Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 972 NEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQ-GSRIVISILCVPLLAGYVRPPQ 1030
NE Q+ ++ Y + A++ WMI+G+ + S + G ++ S +P+ +G + P+
Sbjct: 1328 NEKQQKQQQLQYHIVADSQIWMISGKSKHTFSFNSDTVGEKLKFSCGLIPISSGSLPIPK 1387
Query: 1031 LGLPGVEEANISCNPPGPHLICVLP 1055
+ L G+ +NIS I V P
Sbjct: 1388 VTLVGINNSNISYPKTKNEKIFVYP 1412
>sp|Q3TLI0|TPC10_MOUSE Trafficking protein particle complex subunit 10 OS=Mus musculus
GN=Trappc10 PE=2 SV=2
Length = 1259
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 35 FALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKE------FGGVERGDDE 88
+ + QE LAF+FEM EDAL +YDEL+ + + V G F + +
Sbjct: 222 YFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNG 281
Query: 89 AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKA 148
L P + E++Q + R YLF+ Q LL L RP+EVA R + S +
Sbjct: 282 LVLRKPIDMEKRELIQKQEATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHSCVQE 341
Query: 149 LAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKF 208
L E +P + WV +CL ++ + I+ ++G L+S K
Sbjct: 342 LKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRA----QIDSNIAHMVG-LWSYAMEKL 396
Query: 209 MRLAYLIG 216
L YL G
Sbjct: 397 KSLGYLCG 404
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 7/189 (3%)
Query: 364 NLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSY 423
L ++LSSVE FE+ YL+L+ Y R ++ ++A + + +A
Sbjct: 443 KLQEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKLVGKDLAEFYMRKRSPQKAEMYL 502
Query: 424 EKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQ 483
+ Y EGW + LAECQK L YL + LL+ D L + +ER+ F
Sbjct: 503 QGALKNYLAEGWALPVTHTRKQLAECQKHLGQMENYLQTS-SLLASDHHL-TEEERKYFC 560
Query: 484 SEVISLAYGEMKDPVPLDVSSLITFSG----NPGPPLELCD-GDPGTLSVTVWSGFPDDI 538
E++S A + +P V + +F+ + PP + G T+ +TV S P +
Sbjct: 561 QEILSFASQQEDNPGHKVVLPMHSFARLKDLHFDPPNAVVHAGGVLTVEITVCSQMPIPV 620
Query: 539 TVDTLSLTL 547
VD +++ +
Sbjct: 621 HVDQIAVNV 629
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 946 LPSDG---LRVGQLVSMKWRVERLKDF---EENEASQRNDE-----VLYEVNANADNWMI 994
LP+ G + G L S++ + RL D +++EA +++ ++YEV N+ NW +
Sbjct: 1066 LPASGAEYCKTGSLCSLEVSITRLADLLDVDKDEALVESEDYFSTKLMYEVVDNSSNWAV 1125
Query: 995 AGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGL 1033
G+ G +++P + + + +PL AGY+ P + L
Sbjct: 1126 CGKSCGVIAMPLAAQATHRVHMEVMPLFAGYLPLPDVRL 1164
>sp|P48553|TPC10_HUMAN Trafficking protein particle complex subunit 10 OS=Homo sapiens
GN=TRAPPC10 PE=1 SV=2
Length = 1259
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 13/189 (6%)
Query: 35 FALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKE------FGGVERGDDE 88
+ + QE LAF+FEM EDAL +YDEL+ + + V G F + +
Sbjct: 222 YFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNG 281
Query: 89 AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKA 148
L P + E +Q + R YLF+ Q LL L RP+EVA R + + +
Sbjct: 282 LILRKPIDMEKRESIQRREATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQE 341
Query: 149 LAQHEDILPFCMREVWVITACLALIDATSSQYNDGLA-APDIEKEFYRLLGDLYSLCRIK 207
L E +P + WV +CL ++ Q +G I+ +G L+S K
Sbjct: 342 LKLLEVSVPPGALDCWVFLSCLEVL-----QRIEGCCDRAQIDSNIAHTVG-LWSYATEK 395
Query: 208 FMRLAYLIG 216
L YL G
Sbjct: 396 LKSLGYLCG 404
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 946 LPSDGL---RVGQLVSMKWRVERLKDF---EENEASQRNDE-----VLYEVNANADNWMI 994
P G+ R G L S++ + RL D +++EA +DE ++YEV N+ NW +
Sbjct: 1066 FPPSGMEYCRTGSLCSLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEVVDNSSNWAV 1125
Query: 995 AGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGL 1033
G+ G +S+P + + + +PL AGY+ P + L
Sbjct: 1126 CGKSCGVISMPVAARATHRVHMEVMPLFAGYLPLPDVRL 1164
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 364 NLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSY 423
L ++LSSVE FE+ YL+L+ Y R + ++A + +A
Sbjct: 443 KLKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKFVGKDLAEFYMRKKAPQKAEIYL 502
Query: 424 EKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQ 483
+ Y EGW + LAECQK L YL + LL+ D L + +ER+ F
Sbjct: 503 QGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQTS-SLLASDHHL-TEEERKHFC 560
Query: 484 SEVISLA 490
E++ A
Sbjct: 561 QEILDFA 567
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 19/139 (13%)
Query: 544 SLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRS 603
SL + + +EGA L S T L+PG N IT ++PG+Y L L +G + F
Sbjct: 711 SLEMPSGVALEEGAHVLRCSHVT-LEPGANQITFRTQAKEPGTYTLRQLCASVGSVWF-- 767
Query: 604 HSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPID 663
+ P D S E P L V PL D LL Q V V
Sbjct: 768 -VLPHIYPIVQYDVYSQE----PQLHV---EPLAD-------SLLAGIPQRVKFTVTTGH 812
Query: 664 YSLK-GAILQIDTGPGLTI 681
Y++K G LQ+ + I
Sbjct: 813 YTIKNGDSLQLSNAEAMLI 831
>sp|Q9VFB7|TPC10_DROME Trafficking protein particle complex subunit 10 OS=Drosophila
melanogaster GN=SIDL PE=1 SV=1
Length = 1145
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 35 FALFQESLAFMFEMAHLHEDALREYDELELCYLETVN---MNGKHKEFGGVERGDD--EA 89
+ QE LA +FE L +AL +YDEL+ + + + +N K + + D
Sbjct: 209 YFFMQEDLALIFEKLELPTEALIQYDELDAMFSQFITHTGLNEKQQWLNHFRKPLDAFHG 268
Query: 90 ALLNPGNK-ALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIIS 144
L +K + ++D+ EFR YLF Q+ LL N E+A R F+ S
Sbjct: 269 ICLTRADKFEMRNKIRDEGVSLLEFRNYLFERQAYLLLTCNDIPEIAKRLLNFLFS 324
>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus
GN=Fkbp4 PE=1 SV=3
Length = 458
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 405 EIAAVCFKHGNYDQAAKSYEKVCAL------YSGEGWQDLLAEVLP---NLAECQKILND 455
E V FK G Y QA Y+K+ + +SGE Q + A L NLA C L
Sbjct: 275 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQA 334
Query: 456 EAGYLLSCVRLLSLD----KGLFSTKE 478
+ + SC + L LD KGLF E
Sbjct: 335 FSAAIESCNKALELDSNNEKGLFRRGE 361
>sp|A8GHZ8|ABDH_SERP5 Gamma-aminobutyraldehyde dehydrogenase OS=Serratia proteamaculans
(strain 568) GN=prr PE=3 SV=1
Length = 474
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 31/122 (25%)
Query: 213 YLIGHGTDIERSPVNSASLSMLPWPKP---PVWPLVPADASAEVLAKEKLILQATPRVKH 269
YL GH + I R P+ + S+ PW P W L PA A+ +
Sbjct: 126 YLAGHTSMIRRDPLGVVA-SIAPWNYPLMMAAWKLAPALAAGNCVV-------------- 170
Query: 270 FGIHRKPLPLEPSVLLREANRRRASLSAG----NMFEIFDGSGPDVSLRMSPSNKVQAVS 325
L+PS + A L+AG + + G G V R++ NKV+ VS
Sbjct: 171 ---------LKPSEQTPLTTFKLAELAAGLFPPGVLNVLFGRGASVGDRLTGHNKVRMVS 221
Query: 326 MS 327
++
Sbjct: 222 LT 223
>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4
PE=1 SV=5
Length = 458
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 405 EIAAVCFKHGNYDQAAKSYEKVCAL------YSGEGWQDLLAEVLP---NLAECQKILND 455
E FK G Y QA Y+K+ + +SGE Q + A L NLA C L
Sbjct: 275 ERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQA 334
Query: 456 EAGYLLSCVRLLSLD----KGLFSTKE 478
+ + SC + L LD KGLF E
Sbjct: 335 FSAAIESCNKALELDSNNEKGLFRRGE 361
>sp|P10202|VP23_HHV11 Triplex capsid protein VP23 OS=Human herpesvirus 1 (strain 17)
GN=UL18 PE=1 SV=1
Length = 318
Score = 33.9 bits (76), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 515 PLELCDGDPGTLSVTVWSGFPDDITVDTLSLTL 547
P++LC+GDP +L V+ G D+ +D+L LTL
Sbjct: 105 PVDLCNGDPISLVPPVFEGQATDVRLDSLDLTL 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,391,198
Number of Sequences: 539616
Number of extensions: 17544839
Number of successful extensions: 37989
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 37963
Number of HSP's gapped (non-prelim): 27
length of query: 1066
length of database: 191,569,459
effective HSP length: 128
effective length of query: 938
effective length of database: 122,498,611
effective search space: 114903697118
effective search space used: 114903697118
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)