Query 001500
Match_columns 1066
No_of_seqs 192 out of 240
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1931 Putative transmembrane 100.0 5E-97 1E-101 876.0 31.8 856 18-1065 197-1154(1156)
2 KOG4386 Uncharacterized conser 100.0 2E-45 4.3E-50 408.1 -2.1 608 378-1058 113-803 (809)
3 PF07919 Gryzun: Gryzun, putat 100.0 4.1E-25 8.9E-30 269.2 41.4 448 518-1034 23-553 (554)
4 PF12584 TRAPPC10: Trafficking 99.7 5.2E-16 1.1E-20 156.8 11.6 89 949-1039 25-116 (147)
5 PF11817 Foie-gras_1: Foie gra 99.4 1.3E-12 2.7E-17 143.6 12.0 99 370-468 148-246 (247)
6 PF12742 Gryzun-like: Gryzun, 98.5 3.9E-07 8.4E-12 75.2 6.6 52 979-1033 6-57 (57)
7 PF06159 DUF974: Protein of un 97.6 0.0079 1.7E-07 66.4 21.1 198 645-899 8-236 (249)
8 PF08626 TRAPPC9-Trs120: Trans 97.2 0.053 1.1E-06 72.7 26.6 281 386-673 451-822 (1185)
9 PF14938 SNAP: Soluble NSF att 96.1 0.046 1E-06 61.5 12.2 89 380-468 94-183 (282)
10 PF13424 TPR_12: Tetratricopep 93.7 0.34 7.3E-06 42.9 8.1 62 401-462 6-68 (78)
11 KOG1931 Putative transmembrane 92.9 0.0032 7E-08 78.7 -8.2 245 242-500 426-677 (1156)
12 PRK10803 tol-pal system protei 92.6 0.66 1.4E-05 51.8 10.2 85 385-472 161-249 (263)
13 KOG2625 Uncharacterized conser 91.2 0.15 3.2E-06 53.9 2.7 213 788-1035 100-330 (348)
14 KOG1586 Protein required for f 89.5 0.87 1.9E-05 49.3 6.8 81 381-461 94-175 (288)
15 KOG1953 Targeting complex (TRA 89.0 33 0.00071 44.3 20.5 215 374-595 464-761 (1235)
16 PF14938 SNAP: Soluble NSF att 88.4 4.6 9.9E-05 45.5 12.2 111 381-492 136-247 (282)
17 PF12688 TPR_5: Tetratrico pep 88.3 2.5 5.3E-05 41.6 8.6 66 401-469 39-104 (120)
18 PF13432 TPR_16: Tetratricopep 87.3 1.3 2.9E-05 37.6 5.5 58 405-468 2-59 (65)
19 TIGR02795 tol_pal_ybgF tol-pal 87.2 3.9 8.5E-05 38.4 9.3 67 401-470 40-106 (119)
20 PF13176 TPR_7: Tetratricopept 87.0 1.2 2.6E-05 33.8 4.4 28 404-431 3-30 (36)
21 PF13424 TPR_12: Tetratricopep 85.7 2.4 5.1E-05 37.5 6.4 50 382-431 27-77 (78)
22 PF13414 TPR_11: TPR repeat; P 85.7 2.4 5.1E-05 36.4 6.3 59 402-466 5-64 (69)
23 COG1729 Uncharacterized protei 84.1 5 0.00011 44.6 9.2 86 384-472 161-247 (262)
24 PF14559 TPR_19: Tetratricopep 83.9 0.95 2.1E-05 38.7 2.9 55 384-438 8-64 (68)
25 PF13174 TPR_6: Tetratricopept 82.3 1.8 3.9E-05 31.3 3.5 30 403-432 3-32 (33)
26 PF12895 Apc3: Anaphase-promot 81.8 2 4.2E-05 38.8 4.2 54 403-463 28-81 (84)
27 COG2956 Predicted N-acetylgluc 81.6 9.1 0.0002 43.6 10.0 89 365-465 186-274 (389)
28 cd00189 TPR Tetratricopeptide 80.9 5.3 0.00012 34.1 6.7 55 401-461 35-89 (100)
29 PF07719 TPR_2: Tetratricopept 80.2 3.2 6.9E-05 30.2 4.2 29 403-431 4-32 (34)
30 PF13374 TPR_10: Tetratricopep 79.7 3.6 7.7E-05 31.3 4.5 31 402-432 4-34 (42)
31 PF12862 Apc5: Anaphase-promot 76.9 17 0.00038 33.7 9.1 51 401-451 42-92 (94)
32 PF00515 TPR_1: Tetratricopept 76.8 5 0.00011 29.5 4.4 29 402-430 3-31 (34)
33 PF14559 TPR_19: Tetratricopep 73.2 7.1 0.00015 33.2 5.1 53 411-469 2-54 (68)
34 PF13432 TPR_16: Tetratricopep 72.9 11 0.00023 31.9 6.1 48 383-430 13-61 (65)
35 cd00189 TPR Tetratricopeptide 72.8 9.2 0.0002 32.6 5.9 58 403-466 3-60 (100)
36 PF13181 TPR_8: Tetratricopept 71.7 8.2 0.00018 28.1 4.5 30 402-431 3-32 (34)
37 PF13525 YfiO: Outer membrane 70.6 6.1 0.00013 42.2 4.9 52 403-457 144-195 (203)
38 PF13371 TPR_9: Tetratricopept 67.5 13 0.00028 32.1 5.5 57 406-468 1-57 (73)
39 TIGR03302 OM_YfiO outer membra 66.8 15 0.00033 39.4 7.2 60 404-466 170-229 (235)
40 KOG2002 TPR-containing nuclear 66.1 45 0.00099 43.1 11.6 108 380-489 433-559 (1018)
41 PF13371 TPR_9: Tetratricopept 65.0 11 0.00025 32.4 4.7 31 401-431 30-60 (73)
42 TIGR02552 LcrH_SycD type III s 64.9 42 0.0009 32.5 9.2 62 401-468 52-113 (135)
43 smart00028 TPR Tetratricopepti 63.5 9.6 0.00021 25.7 3.3 27 403-429 4-30 (34)
44 PRK10866 outer membrane biogen 63.1 20 0.00043 39.6 7.2 96 364-464 139-236 (243)
45 PF10602 RPN7: 26S proteasome 62.0 25 0.00055 36.9 7.4 50 384-433 20-69 (177)
46 PF12739 TRAPPC-Trs85: ER-Golg 61.9 22 0.00048 42.4 7.9 61 396-456 204-264 (414)
47 PF09976 TPR_21: Tetratricopep 61.0 48 0.001 33.1 9.0 68 393-463 41-108 (145)
48 PLN03088 SGT1, suppressor of 59.2 52 0.0011 38.4 10.2 78 385-468 20-98 (356)
49 PF13428 TPR_14: Tetratricopep 59.0 16 0.00035 28.8 4.1 32 403-434 4-35 (44)
50 PF13525 YfiO: Outer membrane 56.0 51 0.0011 35.1 8.7 66 384-452 22-91 (203)
51 KOG1840 Kinesin light chain [C 55.5 1.1E+02 0.0023 37.7 12.2 100 363-463 287-390 (508)
52 PRK15359 type III secretion sy 55.4 90 0.0019 31.3 9.9 80 384-469 41-121 (144)
53 PF13414 TPR_11: TPR repeat; P 55.0 19 0.00041 30.7 4.2 45 384-428 20-66 (69)
54 PF04781 DUF627: Protein of un 52.8 58 0.0013 31.7 7.4 65 406-470 2-70 (111)
55 TIGR02795 tol_pal_ybgF tol-pal 52.8 47 0.001 30.8 7.0 63 403-468 5-67 (119)
56 PF07720 TPR_3: Tetratricopept 52.5 25 0.00053 27.1 3.9 20 405-424 6-25 (36)
57 PRK02603 photosystem I assembl 51.7 1.2E+02 0.0027 31.0 10.5 29 402-430 74-102 (172)
58 PF12862 Apc5: Anaphase-promot 51.1 56 0.0012 30.3 7.1 60 409-468 7-69 (94)
59 COG1470 Predicted membrane pro 48.4 5.8E+02 0.013 31.0 22.1 137 520-682 282-429 (513)
60 PF05843 Suf: Suppressor of fo 46.3 2.3E+02 0.005 31.8 12.4 97 383-489 17-116 (280)
61 TIGR02521 type_IV_pilW type IV 45.8 90 0.002 32.1 8.6 25 404-428 103-127 (234)
62 PRK10866 outer membrane biogen 45.1 40 0.00086 37.3 5.9 55 397-454 66-120 (243)
63 KOG1155 Anaphase-promoting com 44.2 2E+02 0.0044 34.7 11.4 116 362-488 431-552 (559)
64 PRK02603 photosystem I assembl 43.7 93 0.002 32.0 8.1 58 402-462 37-94 (172)
65 PF07721 TPR_4: Tetratricopept 43.7 37 0.00079 23.8 3.5 23 402-424 3-25 (26)
66 TIGR02521 type_IV_pilW type IV 43.7 92 0.002 32.0 8.2 52 401-458 66-117 (234)
67 TIGR02552 LcrH_SycD type III s 42.2 74 0.0016 30.7 6.7 54 401-460 18-71 (135)
68 PF09986 DUF2225: Uncharacteri 41.6 1E+02 0.0022 33.5 8.1 35 400-434 165-199 (214)
69 KOG1840 Kinesin light chain [C 41.0 1.5E+02 0.0032 36.6 10.2 88 382-469 263-357 (508)
70 TIGR03302 OM_YfiO outer membra 40.4 83 0.0018 33.7 7.4 67 383-452 49-119 (235)
71 PF13429 TPR_15: Tetratricopep 40.3 45 0.00098 37.0 5.5 73 384-464 200-272 (280)
72 TIGR03504 FimV_Cterm FimV C-te 39.5 43 0.00093 27.0 3.6 25 404-428 3-27 (44)
73 KOG1586 Protein required for f 38.9 1.3E+02 0.0028 33.3 8.1 62 411-472 25-86 (288)
74 KOG0543 FKBP-type peptidyl-pro 38.6 57 0.0012 38.4 5.9 67 404-470 212-287 (397)
75 PF12735 Trs65: TRAPP traffick 38.1 89 0.0019 35.8 7.4 34 1005-1038 259-292 (306)
76 PF12895 Apc3: Anaphase-promot 37.9 53 0.0012 29.3 4.6 25 401-425 59-83 (84)
77 KOG2076 RNA polymerase III tra 37.3 67 0.0014 41.3 6.6 87 382-469 464-555 (895)
78 KOG0545 Aryl-hydrocarbon recep 37.3 64 0.0014 35.7 5.6 112 358-470 130-260 (329)
79 PF12690 BsuPI: Intracellular 36.8 2.8E+02 0.0061 25.4 9.0 62 525-590 3-81 (82)
80 PF13174 TPR_6: Tetratricopept 36.7 46 0.00099 23.7 3.2 28 39-66 3-30 (33)
81 PF09976 TPR_21: Tetratricopep 36.7 1.7E+02 0.0037 29.1 8.5 55 400-461 85-139 (145)
82 PF14853 Fis1_TPR_C: Fis1 C-te 35.8 46 0.001 27.9 3.4 27 403-429 4-30 (53)
83 PF03704 BTAD: Bacterial trans 34.3 2.1E+02 0.0045 28.2 8.7 48 404-457 66-113 (146)
84 PF14561 TPR_20: Tetratricopep 33.7 1.4E+02 0.0031 27.7 6.7 59 401-463 23-81 (90)
85 PF10366 Vps39_1: Vacuolar sor 33.2 49 0.0011 31.9 3.7 27 403-429 42-68 (108)
86 KOG1585 Protein required for f 33.0 3E+02 0.0065 30.8 9.8 84 380-467 91-174 (308)
87 CHL00033 ycf3 photosystem I as 33.0 1.3E+02 0.0029 30.6 7.2 46 384-429 52-101 (168)
88 cd02680 MIT_calpain7_2 MIT: do 32.8 72 0.0016 28.9 4.4 25 410-434 16-40 (75)
89 PRK11788 tetratricopeptide rep 32.5 1.9E+02 0.004 33.5 9.2 58 404-467 184-241 (389)
90 PLN03098 LPA1 LOW PSII ACCUMUL 31.7 1.2E+02 0.0025 36.6 7.1 49 381-429 89-141 (453)
91 PF04190 DUF410: Protein of un 31.5 1.9E+02 0.0041 32.4 8.5 77 412-490 2-80 (260)
92 KOG2076 RNA polymerase III tra 30.9 1.3E+02 0.0028 38.9 7.6 56 402-462 416-471 (895)
93 TIGR00990 3a0801s09 mitochondr 30.8 1.6E+02 0.0034 37.0 8.7 73 383-461 415-488 (615)
94 KOG2908 26S proteasome regulat 30.8 5.2E+02 0.011 30.2 11.6 99 380-481 95-199 (380)
95 PRK11788 tetratricopeptide rep 30.8 2E+02 0.0044 33.2 9.1 24 404-427 73-96 (389)
96 CHL00033 ycf3 photosystem I as 29.4 2.1E+02 0.0046 29.1 7.9 54 402-458 37-90 (168)
97 KOG1914 mRNA cleavage and poly 29.3 4.6E+02 0.01 32.4 11.4 96 384-489 383-481 (656)
98 PF13176 TPR_7: Tetratricopept 28.9 62 0.0014 24.3 2.9 24 40-63 3-26 (36)
99 PLN03088 SGT1, suppressor of 28.8 1.4E+02 0.0029 35.0 7.1 48 401-454 71-118 (356)
100 KOG4626 O-linked N-acetylgluco 27.0 58 0.0013 40.3 3.6 95 366-466 242-349 (966)
101 TIGR00990 3a0801s09 mitochondr 26.7 1.2E+02 0.0026 38.1 6.6 29 401-429 161-189 (615)
102 TIGR02917 PEP_TPR_lipo putativ 26.7 1.8E+02 0.0039 37.0 8.4 45 384-429 787-832 (899)
103 KOG2376 Signal recognition par 25.5 1.7E+02 0.0037 36.2 7.1 72 375-449 83-159 (652)
104 cd05804 StaR_like StaR_like; a 25.5 2.3E+02 0.0049 32.3 8.2 62 401-464 149-210 (355)
105 PF03704 BTAD: Bacterial trans 24.8 2.8E+02 0.0061 27.3 7.7 62 372-433 54-129 (146)
106 KOG0547 Translocase of outer m 24.7 97 0.0021 37.4 4.8 58 405-468 120-177 (606)
107 KOG3081 Vesicle coat complex C 24.6 1.6E+02 0.0034 33.2 6.1 55 401-461 208-262 (299)
108 PRK15174 Vi polysaccharide exp 23.7 2.4E+02 0.0053 35.8 8.6 56 402-463 286-341 (656)
109 TIGR03504 FimV_Cterm FimV C-te 22.7 99 0.0021 25.0 3.1 26 39-64 2-27 (44)
110 KOG1126 DNA-binding cell divis 22.7 3E+02 0.0065 34.5 8.5 86 364-449 315-412 (638)
111 KOG2003 TPR repeat-containing 22.3 4.3E+02 0.0092 31.8 9.1 52 382-433 641-693 (840)
112 cd02681 MIT_calpain7_1 MIT: do 22.0 2E+02 0.0043 26.1 5.2 30 404-433 10-39 (76)
113 PF10300 DUF3808: Protein of u 21.7 3.8E+02 0.0082 32.7 9.3 70 382-456 282-356 (468)
114 PRK11189 lipoprotein NlpI; Pro 21.6 3.5E+02 0.0077 30.5 8.6 27 403-429 101-127 (296)
115 PRK12370 invasion protein regu 21.4 4.8E+02 0.01 32.4 10.4 49 384-432 321-370 (553)
116 PRK15359 type III secretion sy 21.3 2.1E+02 0.0045 28.6 6.0 62 383-444 74-137 (144)
117 PF07919 Gryzun: Gryzun, putat 21.2 1.4E+03 0.03 28.1 14.4 141 522-678 356-512 (554)
118 PF13428 TPR_14: Tetratricopep 21.1 1.3E+02 0.0029 23.5 3.6 27 39-65 4-30 (44)
119 TIGR02917 PEP_TPR_lipo putativ 21.1 2.6E+02 0.0057 35.5 8.3 59 403-468 706-764 (899)
120 PF09295 ChAPs: ChAPs (Chs5p-A 20.9 3.2E+02 0.007 32.6 8.2 72 378-461 218-289 (395)
121 PRK10370 formate-dependent nit 20.4 4.4E+02 0.0096 28.0 8.5 27 404-430 77-103 (198)
122 PRK11447 cellulose synthase su 20.4 2.6E+02 0.0057 38.1 8.3 51 383-433 285-336 (1157)
123 PF13374 TPR_10: Tetratricopep 20.4 1.9E+02 0.0041 21.4 4.3 31 38-68 4-34 (42)
124 PRK10370 formate-dependent nit 20.3 4.9E+02 0.011 27.6 8.9 80 384-469 90-173 (198)
No 1
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=100.00 E-value=5e-97 Score=876.04 Aligned_cols=856 Identities=27% Similarity=0.331 Sum_probs=644.1
Q ss_pred eeeeeehhccCCCchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhc-C--CCcccCCCCCCCCch---hhh
Q 001500 18 ITLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNM-N--GKHKEFGGVERGDDE---AAL 91 (1066)
Q Consensus 18 ~~~~~~~~~~~~w~f~~~FllkE~LA~lfe~~~L~eDAL~qYdELea~f~~~vn~-~--~~~~~~g~~~~~~d~---~~l 91 (1066)
||=+..+|+.||||||+||++||+||++|||++||||||.|||||+++|.+.++. + ..+.|||++..|||. +.+
T Consensus 197 iRslre~r~~~~wdF~~fFl~kE~LA~iFe~l~l~edAL~qydel~a~~sq~i~~~g~~k~q~~l~~f~kpd~s~~g~~l 276 (1156)
T KOG1931|consen 197 IRSLREKRNSPGWDFCEFFLTKEKLAFIFEMLNLLEDALLQYDELDAEFSQRIMNMGDGKLQVWLGSFSKPDDSLFGGSL 276 (1156)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCccccccccccCCchhhhcCceE
Confidence 4555799999999999999999999999999999999999999999999999944 3 348999999999985 677
Q ss_pred cCCCChhHHHHhhcCCCChhHHHHHHHHHHHHHHHHhCChHHHHhhHHHHHHHHHHHHHHhcccCcccchhhHHHHHHHH
Q 001500 92 LNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLA 171 (1066)
Q Consensus 92 l~~~~~~~r~lI~~~~islFd~r~YLF~RQ~~LL~~l~~~~ev~~ra~~fI~~~~~~L~~~~~~~~~~~~e~W~~~~~~~ 171 (1066)
+.+++++.++.|+++..++|+||.|||+||+.||++++||+|||+|++.|+.+|++++..++.++|.++++||.|.+|++
T Consensus 277 l~~gs~~~~q~i~d~~ftl~efR~yLf~~Q~~Lll~lnrp~eva~r~~e~l~s~lqel~Ll~~s~~~~~~~~w~i~a~L~ 356 (1156)
T KOG1931|consen 277 LIPGSLEKTQHIQDKYFTLFEFRLYLFERQTLLLLKLNRPFEVASRAYELLFSFLQELSLLESSVPLGALKCWEITAALE 356 (1156)
T ss_pred EecCchHHHHhhhcCceeeehHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCCCcchHHHHHHHhcchHHHHHHHHHHHHHHhcCCccccCCCCCcccccCCCCCCCCCCCCCCCCccH
Q 001500 172 LIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASA 251 (1066)
Q Consensus 172 vl~~c~~~~~~~~~~~~~~~~~~~~~~eL~~~aR~kl~~Lg~~~G~~~~~~~~p~~~~~~~~lp~~~~~~~~~~~~~~~s 251 (1066)
+++.|. ..+...+++.+.+.+++|+||.+||+||.++|++||+ +|...|- -.+
T Consensus 357 ~~e~~~---~~~~~~~n~~t~~~~~~~~iw~~ar~kL~~m~~~~~l----------------i~d~~p~--------~~s 409 (1156)
T KOG1931|consen 357 YLEFTE---VSGPLLPNIKTELFMLCADIWSYARMKLYGMALLCGL----------------IPDSDPN--------YKS 409 (1156)
T ss_pred HHHHhh---ccccccccccchHHHHhhhHHHHHHHHHHHHHHHhcc----------------CCCCCCC--------ccc
Confidence 999998 2233345566789999999999999999999999999 3433221 136
Q ss_pred HHHHHHHHHhhcCcccccccccCCCCCCChhhHHHHHhhhhhccccCcccccccCCCCCccccCCCCccccccccccCCC
Q 001500 252 EVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNS 331 (1066)
Q Consensus 252 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ls~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 331 (1066)
|||+. + ..+++| +|+.+
T Consensus 410 e~l~~---~--------------------------------~~~~~~--------l~d~r-------------------- 426 (1156)
T KOG1931|consen 410 EQLKE---T--------------------------------FVLSTG--------LLDNR-------------------- 426 (1156)
T ss_pred cccce---E--------------------------------eeehhh--------hhhcc--------------------
Confidence 77742 0 234444 66654
Q ss_pred CCCCCCCCCcchhhhHHHHhhhhhhcccCChhhHHHhhcCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHH
Q 001500 332 SPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCF 411 (1066)
Q Consensus 332 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~LkeAL~S~e~F~~~Yl~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y 411 (1066)
|...+.+. -.+.++++|+.+..+|.++|+++.+.++..|+++.|.|.|+.++.|+|++|.
T Consensus 427 -~~~~ke~~-------------------S~~~k~~~~~~~~~s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~ 486 (1156)
T KOG1931|consen 427 -PTLTKEAL-------------------SLFNKLEEALQRIVSFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYS 486 (1156)
T ss_pred -cCcchhhh-------------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHh
Confidence 21101011 1478999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHh
Q 001500 412 KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAY 491 (1066)
Q Consensus 412 ~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~~~~~~~~er~~~~~ell~~~~ 491 (1066)
..+.+++|+.++.++...+..++|....++++..+++|++.|+...+|.+++.-+.+.. .+.+..|.+++.+++++..
T Consensus 487 ~~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L~~~~~~~k~~~~ia~~~--~L~~~~r~h~~~k~l~~~~ 564 (1156)
T KOG1931|consen 487 ILKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNILGLCKAYDKTESSIAKFH--DLQELNRKHLMYKLLGLFE 564 (1156)
T ss_pred hhcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhH--HHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999998555432 4666778899999887653
Q ss_pred c---CCCC-------C--cccc-CCCceEeecCCC-------------C-Cccc-----------cC---CCCe---EEE
Q 001500 492 G---EMKD-------P--VPLD-VSSLITFSGNPG-------------P-PLEL-----------CD---GDPG---TLS 527 (1066)
Q Consensus 492 s---~l~~-------~--v~~~-~~~l~~~~~~~~-------------~-p~~~-----------~~---~D~~---~l~ 527 (1066)
- ...+ . +..+ ++..++...... + +.++ |. .+.+ +..
T Consensus 565 ~~~~s~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~~~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~~l~s~~ 644 (1156)
T KOG1931|consen 565 VFLNSKVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMDGDVISQGPVDFLYKSIVVNKLILECRDIMYGEAELLSFE 644 (1156)
T ss_pred hhhcchhhhhcccchhhhhhhhhccccceeEEeeccceeecceeeeccchHhhHhhhhhhhHHHHHHhhccchhhheeee
Confidence 1 0000 0 0000 000000000000 0 0000 00 0000 111
Q ss_pred E------------------------EEEeCCCCceE-----------eeEEEEEEEecc------cCCCCceEEEecCce
Q 001500 528 V------------------------TVWSGFPDDIT-----------VDTLSLTLMATY------NADEGAKALNTSTAT 566 (1066)
Q Consensus 528 V------------------------~l~s~lP~~I~-----------~d~v~l~L~~~~------~~~~~~~~l~s~~~v 566 (1066)
+ ++.+.-|.+.+ -.+++++-++.. ...++..-.-++.++
T Consensus 645 v~l~gi~~~~~~~~~q~e~~s~~~iem~~~tk~dn~l~~~~~~c~~~~~~l~~~~s~s~~~~~s~v~~ee~~~~~s~s~v 724 (1156)
T KOG1931|consen 645 VILEGITFVKEFPVNQDELISLPEIEMKNPTKVDNSLQAHGLNCDEYASKLSVQQSSSLESLQSPVEVEEGIGNMSCSPV 724 (1156)
T ss_pred eEeeccccccccccchhhhccchhheeecCccccchhhhhhhccccchhhcceeecccccccccchhhhcccccccccce
Confidence 1 22222221111 111111111100 011111223467788
Q ss_pred EeeCCccEEEEEcCCCcceeEEEEEEEEEEcceeeeeeccccCCCCCCccccccCCCCCCeEEEEcCCCeeEEEeccCCC
Q 001500 567 VLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSP 646 (1066)
Q Consensus 567 ~L~PG~Nki~L~~~~~~~G~y~l~~l~i~ig~l~F~s~~f~~~~~~~~~~~~s~~~~~~p~~~v~~~~p~v~l~~~~~~p 646 (1066)
.|.||.|.+++..++..+|.|...+++.++|.+.|+++.+. |++.+|+++.+ | ..++.. + ..
T Consensus 725 ~Lspg~N~i~~~~~~~~~g~~~~~~L~~qi~sl~f~~~q~~---~~~k~d~~s~~-P---------~~~~~~--l---~~ 786 (1156)
T KOG1931|consen 725 SLSPGENQITFRLNAPFPGVYLLYQLCDQIGSLDFISKQSF---PTKKNDQGSTE-P---------ETKKER--L---QC 786 (1156)
T ss_pred eeccCcceeEEecCCCCCCeeeehhhhcccceEEEEccccC---CcccccccccC-C---------ccccch--H---HH
Confidence 99999999999999999999999999999999999976442 56666665433 2 222111 1 12
Q ss_pred cccCccEEEEEEEEcCcccc-cceEEEEecCCCccccccccccccccccccccccccCccccccccccccccccccccce
Q 001500 647 LLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGR 725 (1066)
Q Consensus 647 lL~g~~q~V~l~V~sG~~~i-~~~~L~l~~s~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 725 (1066)
+++|+.|+|+.+++.|...| .++.+++.|....++..+..+.+ .++... ..+..++.. .....
T Consensus 787 lla~I~q~v~~~~~g~i~~i~~~~~l~l~ce~~~~m~~~~~T~~-----~ae~~~----------~d~~~~~s~-~~~p~ 850 (1156)
T KOG1931|consen 787 LLAGIVQSVEDIVKGGILHIKNGLNLSLRCEKEVRMRSSENTTI-----FAEAAR----------NDKNIFESL-LCTPK 850 (1156)
T ss_pred HHhhcceeeeeEEeccEEEecCCCcceEEecccceecccccccc-----cccccc----------cCccchhhh-ccccc
Confidence 89999999999999999888 45778887777777666543211 111000 001111111 22345
Q ss_pred eecCCCCCCceeEEEEEEEEeeccccCCccccCCCcccccccceeEEEEeeecccccceeeeEEEEEeeCCeEEEeEEee
Q 001500 726 IQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIAD 805 (1066)
Q Consensus 726 I~l~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~i~~~~i~l~f~~PF~vs~~l~s 805 (1066)
+.+.+++...-...++|+++..|. |. .. +..+++.|+ |+|+.++++|+.+|.+||+|++++++
T Consensus 851 ~~~~d~e~~~~~~~~ip~l~~~d~---~s----------s~---h~~~kvsin-~~~s~~e~~IA~~f~~~~~vt~~l~~ 913 (1156)
T KOG1931|consen 851 LIFFDFEESFISLYEIPVLNGFDC---FS----------SD---HFNLKVSIN-LPFSQLELFIADAFLIPFDVTWRLLF 913 (1156)
T ss_pred eEEecchhcccccccccccCCccc---cc----------cc---cccceeEec-cchhhhheehhhheecccceeEeeeh
Confidence 666666766666677777753331 11 11 235556666 88888999999999999999999999
Q ss_pred ccCCcceEEEEEEeeccccceEeccceeccccCccccccCCCCCCCCccceeecCCCeeeEEEEEEcCCCCCchhhcccc
Q 001500 806 KCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVR 885 (1066)
Q Consensus 806 ~~~~~~~~lqv~l~~~sp~~l~i~~~~l~~~~~~~~~~~~~~~p~s~l~~l~l~~~~~~s~~f~l~~~~~~~~~~~p~~~ 885 (1066)
.|+|+.+++||++++.....+...+..+.+.+++.+..+.+.|+. +.+|+.. ..+.+|.+.+.+..++
T Consensus 914 ~~~~~~~~lqvl~~~~~~~~l~~~~~~l~~~~~~i~~q~~~~~t~-S~~p~~~----~~s~~~~~il~~~~ep------- 981 (1156)
T KOG1931|consen 914 ECGDTFKELQVLKHLLYDYDLFKEDQILVLLPGEIRKQNDLLNTK-SFFPNEC----IESVVFDKILICLNEP------- 981 (1156)
T ss_pred hcCcceeeHHHHHHHHHHhhhhhhceEEEecCcchhhhcCCCCcc-ccccHHH----HHHHHHHHHHHHhcCC-------
Confidence 999988899999999999999999999999998888777766665 6667654 3444554444443232
Q ss_pred cCeeEEEEEec------cccc--ccCCCCceeeeccCccccccccceeeeeeecCccccccceeeeccCCCCcceeCceE
Q 001500 886 RDSLLNIQYGI------SGKR--TIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLV 957 (1066)
Q Consensus 886 ~~~~~~~~y~~------~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~tl~~l~~~~le~~~~~~~~p~~~~~~Rvgt~~ 957 (1066)
++.+++.... .++. ++..++-|.+.| |...|+++|.|+ ++.+++.|.++||||..|
T Consensus 982 -~~~lh~~~s~~~~~~~d~d~~~~~~~~r~y~~~~-------qlv~~~~~~dvq--------a~~~p~~~~~~~rv~~~~ 1045 (1156)
T KOG1931|consen 982 -ESILHSRGSAGASFVTDMDELERNLVPRTYTVPF-------QLVGFEPFFDVQ--------AEQMPTSHDELCRVGALI 1045 (1156)
T ss_pred -cccccccccccccccchHHhhhccccccccccee-------cccCceeeeeee--------eeeccCcchhHHHHhhcc
Confidence 0233333322 2221 223455666676 467799999996 566677899999999999
Q ss_pred EEEEEEEEecCccchhccc--cCceEEEEEecCCCcEEEEecceeEEEeeCCCCCeEEEEEEEEEcccCCCCCCccccCC
Q 001500 958 SMKWRVERLKDFEENEASQ--RNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPG 1035 (1066)
Q Consensus 958 ~l~~~i~~l~~~~~~~~~~--~~~~L~yev~~~s~~wmvsGrk~gvvs~~~~~~~~~~v~~~~~PL~aGyl~lP~l~L~~ 1035 (1066)
+|+|+||||+++.+++.+. ++.++||||++++++|||||||+|+|+|+.++ ++|++++.||||+|||||||+|+|++
T Consensus 1046 ~mel~iTrl~el~~s~k~~e~qs~elmYEv~a~s~~Wli~Gr~~g~Is~~~~q-~t~~i~v~~vPL~aGyl~lP~v~l~n 1124 (1156)
T KOG1931|consen 1046 GMELSITRLVELLESDKQDEIQSGELMYEVLANSNNWLIAGRKRGVISMKRKQ-TTHQISVHVVPLKAGYLPLPRVRLTN 1124 (1156)
T ss_pred CceEEEEeehhcccchhhhhcccceEEEEecCCCceEEEecCccceeeeeccc-cceEEEEEEEEeccccccCceeeccc
Confidence 9999999999988877433 45899999999999999999999999999987 99999999999999999999999999
Q ss_pred ccCCccCCCCCCCceEEEeCCCCCcccccc
Q 001500 1036 VEEANISCNPPGPHLICVLPPTLSSSFCIA 1065 (1066)
Q Consensus 1036 ~~~~~~~~~~~~~~~i~v~p~~~~~~~~~~ 1065 (1066)
|.++|.+++..+++.++++||...+|.|.+
T Consensus 1125 ~~~a~~s~k~d~~~~v~~lPpvlnss~~l~ 1154 (1156)
T KOG1931|consen 1125 YNDAGKSLKVDKHNLVEPLPPVLNSSPDLQ 1154 (1156)
T ss_pred cccccccccCCCCCcccCCcccccCCCCCc
Confidence 999999999999999999999999999976
No 2
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-45 Score=408.11 Aligned_cols=608 Identities=13% Similarity=0.006 Sum_probs=433.0
Q ss_pred HHHHHHHHHHHHHHhc--CCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCC
Q 001500 378 KYLELTKGAANNYHCS--WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND 455 (1066)
Q Consensus 378 ~Yl~Lt~~Ai~~yk~~--~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~ 455 (1066)
.-+.+.+++..+|+.+ .|+++ .+++.+|..||+.++|.+|...++.++..|+.+|||.+...++..+..|++.+..
T Consensus 113 ~~Ia~Lk~~a~Q~~~Y~~P~~nS--~~~V~~Gq~~~~~n~~~~A~~~ve~a~~~~~~q~~~~~~~~Vis~~~~~~~~~qk 190 (809)
T KOG4386|consen 113 TEIAALKRNAPQNVPYPSPDANS--SSTVFFGQRPWRINHEGLATAEVEAAAVTAIIQRLVVNHEGVISLLSAALAQYQK 190 (809)
T ss_pred hHHHHHhhcccccCCCCCCCcCc--cceeEecccceeecchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3456777888889885 57777 6699999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhcCCCC-Ccc--------------------------ccCCCceEe
Q 001500 456 EAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKD-PVP--------------------------LDVSSLITF 508 (1066)
Q Consensus 456 ~~dYv~~~l~LLs~~~~~~~~~er~~~~~ell~~~~s~l~~-~v~--------------------------~~~~~l~~~ 508 (1066)
-++|......++... ++..+.++++.......+.+.+.+. ... +-.+++..+
T Consensus 191 ~~~~~~~k~~mm~~~-t~~~nne~qR~~r~~~~Vv~dna~~~s~~~Dmm~~~T~a~~~~~~Iq~~~~~~~ql~~sD~V~~ 269 (809)
T KOG4386|consen 191 YGCLRMKKKVMMEMN-TCYANNEIQRALRFWGLVVKDNALPYSIRKDMMHRATWAAYAITSIQDYAVCCMQLMPSDCVKG 269 (809)
T ss_pred hhhHHHHHHHHHhhh-hhhcchHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhheechhhhhhH
Confidence 999998888888764 3455555554444444444322211 111 011333333
Q ss_pred ecCCC---CCccccCCCCeEEEEEEEeCCCCceEeeEEEEEEEecccCCCCce--------------EEEecCceEeeCC
Q 001500 509 SGNPG---PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAK--------------ALNTSTATVLKPG 571 (1066)
Q Consensus 509 ~~~~~---~p~~~~~~D~~~l~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~--------------~l~s~~~v~L~PG 571 (1066)
..++. +|..+. +++...+..+.-+.|..+.+.+....+++. ...+ -.-..+..++.||
T Consensus 270 l~~~~~~~~P~~~~-~~~~~~q~~L~t~~~~~~~~~q~~~aF~~Q----~~k~~~l~~Et~~s~~~~qtv~Q~s~~~V~~ 344 (809)
T KOG4386|consen 270 LLDVLDGKPPGSPF-PNDDISQEQLHTYQLQWQHVLQEHPAFVVQ----ASKIAELFLETRVSFLDQQTVEQDSKVAVRV 344 (809)
T ss_pred HHHHhcCCCCCCCC-CChhHHHHHHHhcCccHHHHHHhCcHHHhh----HhHHHHHHHHHHHHHHHHhhhccCceEEeeH
Confidence 32222 232222 223345556677889999998888887762 1110 1113455667777
Q ss_pred ccEE---EEEcCCCccee-EEEEEEEEEEcceeee-ee-cccc-CCCCCCc-c-------ccccCCCCC---------Ce
Q 001500 572 RNTI---TVDLPPQKPGS-YVLGALTGHIGRLRFR-SH-SFSK-VGPADSD-D-------FMSYEKPTR---------PI 627 (1066)
Q Consensus 572 ~Nki---~L~~~~~~~G~-y~l~~l~i~ig~l~F~-s~-~f~~-~~~~~~~-~-------~~s~~~~~~---------p~ 627 (1066)
+..- .+...+...|. ......-...|+..-. +. .|.. +|++++. + +..-.+.+. ..
T Consensus 345 e~~s~i~q~i~~nd~~~~~~~~k~~~~A~~t~n~~~~li~~~~~~G~v~~Sks~~~q~~~~~~~~n~~q~~~~tv~~~t~ 424 (809)
T KOG4386|consen 345 EIVSKIEQVIRLNDVSVHLKAKKFPPDANQTANDADCLIYDPIHLGSVEVSKSKPLQRVVLLDLKNAKQNWIVTVTKVTL 424 (809)
T ss_pred HHHHHHHHHHhhcchhheeeeecCCcccccCCCCCcEEEecCCCCcchhhhhhhhhhhHHHhhccccccceEEEeeehhh
Confidence 6432 34444444553 2222222222222211 11 2221 3332221 0 000000001 12
Q ss_pred EEEEcCCCeeEEEeccCCCcccCccEEEEEEEEcCcccc-cceEEEEecCCCccccccccccccccccccccccccCccc
Q 001500 628 LKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQK 706 (1066)
Q Consensus 628 ~~v~~~~p~v~l~~~~~~plL~g~~q~V~l~V~sG~~~i-~~~~L~l~~s~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1066)
.+....+|.+++...+.+|.+-+++++.-++|.+.+.++ .++.+++++..|-.-.... +.+ +...+..
T Consensus 425 ~l~~a~~~NIe~~~~~~~~~~~~E~~~~~lki~~~kts~~~e~~~kv~~~~Ge~tsLT~---------rn~--~k~~~~~ 493 (809)
T KOG4386|consen 425 DLGNAIRGNIEFDENALNRNCHVENIIGFLKIGVAKTSVKLESVEKVDCLIGEVTSLTI---------RNT--CKSSPIH 493 (809)
T ss_pred hhhhhccCcceeccccCCcccchheEEEEEEeeechhhhhhhhhhhcCcccccccceee---------ecc--cccCCch
Confidence 233445788888888899999999999999999988888 5777887776665544332 111 2344566
Q ss_pred cccccccccccccccccceeecCCCCCCceeEEEEEEEEeeccccCCccccCCCcccccccceeEEEEeeecccccceee
Q 001500 707 DCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFE 786 (1066)
Q Consensus 707 ~~~~~~~~~~~~v~~~~~~I~l~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~i~~ 786 (1066)
.|++..++.. ..++.+++-+++...+..|+|+.+.+.|.|++.++|...+.++- ..+-|+ |++..
T Consensus 494 ~~~d~~~~~~-------k~~~a~~v~~~EQ~~KmlyvrcgtvgsrmflvyvsyLinttVee---keivck---chkde-- 558 (809)
T KOG4386|consen 494 GLLDFKRKEQ-------KHAEAAAVLFVEQELKMLYVRCGTVGSRMFLVYVSYLINTTVEE---KEIVCK---CHKDE-- 558 (809)
T ss_pred hhhhhhhHhh-------ccCchhhcchHHHHHHHHHHhhhhhccchhhHHHHHHhhhHHHH---hhHhhh---ccccc--
Confidence 6766665443 36888999999998899999999999999999999988776665 266778 88887
Q ss_pred eEEEEEeeCCeEEEeEEeec--------cCCcceEEEEEEeeccccceEeccceeccccCccccccCCCCCCCCccceee
Q 001500 787 RTIAVHFTDPFHVSTRIADK--------CSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVI 858 (1066)
Q Consensus 787 ~~i~l~f~~PF~vs~~l~s~--------~~~~~~~lqv~l~~~sp~~l~i~~~~l~~~~~~~~~~~~~~~p~s~l~~l~l 858 (1066)
|++++...||++..+|+++ +.|.||++|.++.+.|||.++|-++++++..++..+.+ ..|+..+..+
T Consensus 559 -TvtietvfpfdvavkFvstkfehlervyadIpfllmtdLlsaspwAltIVsSelqlapsmttvdq----leSqvdnvil 633 (809)
T KOG4386|consen 559 -TVTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQ----LESQVDNVIL 633 (809)
T ss_pred -eEEEEEEeeeeeeeeeehhhhhhccChhhhhhHHHHHHHhhhchHHHHHHHHHHhhhhhheeeec----ccccccchhh
Confidence 9999999999999999985 67789999999999999999999999999885444433 4568888889
Q ss_pred cCCCeeeEEEEEEcCCCCCchhhcccccCeeEEEEEecccccccCCCCceeeeccCccccccccceeeeeeecCcccccc
Q 001500 859 SSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPT 938 (1066)
Q Consensus 859 ~~~~~~s~~f~l~~~~~~~~~~~p~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~tl~~l~~~~le~~ 938 (1066)
+.|+.++.|||++|+..++. + +++..++|.++|.|++ + ... .+..+|.++||+.+++.|
T Consensus 634 qtgEsasecfclqcpslgni-E------ggvatGhyiisWkRts-a---meN----------ipiittVitLphviVe~i 692 (809)
T KOG4386|consen 634 QTGESASECFCLQCPSLGNI-E------GGVATGHYIISWKRTS-A---MEN----------IPIITTVITLPHVIVEAI 692 (809)
T ss_pred hcccceeeeeeEeccccccc-c------CCCccceEEEEEeecc-c---ccC----------CCceeeecccccceeeec
Confidence 99999999999999987663 1 1577899999988774 1 111 234678999999999999
Q ss_pred ceeeeccCCCCcceeCceEEEEEEEEEe-cCccchhccccCceEEEEEecCCCcEEEEecceeEEEeeCCCCCeEEEEEE
Q 001500 939 LAIGFLALPSDGLRVGQLVSMKWRVERL-KDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISIL 1017 (1066)
Q Consensus 939 ~~~~~~p~~~~~~Rvgt~~~l~~~i~~l-~~~~~~~~~~~~~~L~yev~~~s~~wmvsGrk~gvvs~~~~~~~~~~v~~~ 1017 (1066)
|+++...+|+ |+|||+++++.|++++- +..+| .+.- ++++|+|||+|.|+..+++.| |++++|.|+
T Consensus 693 Plhvnadlps-fgrVReslpvkyhLqnktdlvqd-------veis---vepsDaFMFSGlkqirlriLP--Gteqemlyn 759 (809)
T KOG4386|consen 693 PLHVNADLPS-FGRVRESLPVKYHLQNKTDLVQD-------VEIS---VEPSDAFMFSGLKQIRLRILP--GTEQEMLYN 759 (809)
T ss_pred cceeecCCCC-cceecccccEEEEeccccceeee-------EEee---cccchhheecccceEEEEEcC--CCceEEEEE
Confidence 9999999999 69999999999997753 33555 3332 399999999999996655555 999999999
Q ss_pred EEEcccCCCCCCccccCC--ccCC-ccCCCCCCCceEEEeCCCC
Q 001500 1018 CVPLLAGYVRPPQLGLPG--VEEA-NISCNPPGPHLICVLPPTL 1058 (1066)
Q Consensus 1018 ~~PL~aGyl~lP~l~L~~--~~~~-~~~~~~~~~~~i~v~p~~~ 1058 (1066)
+|||||||+.||+|+|.. +.+. |....|+.|+.|||+|++.
T Consensus 760 fypLmAGyqqlPslninllrfpnfTnQllrRfiPtsIFVkPqgr 803 (809)
T KOG4386|consen 760 FYPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGR 803 (809)
T ss_pred EehhhchhhhCCcccccCccCCchHHHHHHhhcCceEEEccccc
Confidence 999999999999998543 3332 4455599999999999974
No 3
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.95 E-value=4.1e-25 Score=269.16 Aligned_cols=448 Identities=17% Similarity=0.200 Sum_probs=290.8
Q ss_pred ccCCCCeEEEEEEEeCCCCceEeeEEEEEEEeccc-----CCC-----------CceEEEecCceEeeCCccE-EEEEcC
Q 001500 518 LCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYN-----ADE-----------GAKALNTSTATVLKPGRNT-ITVDLP 580 (1066)
Q Consensus 518 ~~~~D~~~l~V~l~s~lP~~I~~d~v~l~L~~~~~-----~~~-----------~~~~l~s~~~v~L~PG~Nk-i~L~~~ 580 (1066)
...+++..++|.|++.+|.+|.+++++|.|++... ..+ +........++.|.||..+ +.+...
T Consensus 23 ~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~p~~~kv~~~~~~ 102 (554)
T PF07919_consen 23 GKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTLSPGQTKVFSFKFV 102 (554)
T ss_pred ccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEEeecceEEEEEEEe
Confidence 44478889999999999999999999999997310 000 0111234457889999987 477777
Q ss_pred CCc---ceeEEEEEEEEEEcceeee-eeccccC-CC-CCCcccccc-----CCC-----CCCeEEEEcCCCeeEEEe-cc
Q 001500 581 PQK---PGSYVLGALTGHIGRLRFR-SHSFSKV-GP-ADSDDFMSY-----EKP-----TRPILKVFNPRPLVDLAA-AI 643 (1066)
Q Consensus 581 ~~~---~G~y~l~~l~i~ig~l~F~-s~~f~~~-~~-~~~~~~~s~-----~~~-----~~p~~~v~~~~p~v~l~~-~~ 643 (1066)
... .|.+++.++.+.+|.-.|. ...|+.. +. ....-+... ..+ ..+.+.|.|++|++.+++ .+
T Consensus 103 ~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~p~pp~v~I~~~~~ 182 (554)
T PF07919_consen 103 PREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIRILPRPPKVSIKLPNH 182 (554)
T ss_pred ccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEEEECCCCCeEEEeCCC
Confidence 777 9999999999999964444 1233321 11 111100000 001 357899999999999999 99
Q ss_pred CCCcccCccEEEEEEEEcCcccccceEEEEecC-CCccccccccccccccccccccccccCccccccccccccccccccc
Q 001500 644 SSPLLINEAQWVGIIVQPIDYSLKGAILQIDTG-PGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLH 722 (1066)
Q Consensus 644 ~~plL~g~~q~V~l~V~sG~~~i~~~~L~l~~s-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 722 (1066)
..|+++||.+.|.|+|.|+++...++++.+..- ++..-..... ..+.. . .... ..++-...
T Consensus 183 ~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~---~~~~-------~~~~~~~~ 244 (554)
T PF07919_consen 183 KPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEE------TEDLS--Q---VNWD-------SDKDDEPL 244 (554)
T ss_pred CCCeEcCCEEEEEEEEEcCCCccceeEEEEEEeccccccccccc------Cccce--e---cccc-------cccccchh
Confidence 999999999999999999998886656655322 1111111000 00000 0 0000 00000111
Q ss_pred cceeecCCCCCCceeEEEEEEEEeeccccCCccccCCCcccccccceeEEEEee--e--ccccc--ce-eeeEEEEEeeC
Q 001500 723 DGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQ--F--GVCHN--QI-FERTIAVHFTD 795 (1066)
Q Consensus 723 ~~~I~l~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~--~--~~~~~--~i-~~~~i~l~f~~ 795 (1066)
...+++|.++++.+.+.++++++.... +. .+.+++. + . ... .+ +..++.+.+..
T Consensus 245 ~~~~~lg~l~~~~s~~~~l~i~~~~~~----------------~~--~L~i~~~Y~l~~~-~~~~~~i~~~~~~~l~~~~ 305 (554)
T PF07919_consen 245 FLGIPLGELAPGSSITVTLYIRTSRPG----------------EY--ELSISVSYHLDVE-SDPETPISKTKTVQLPVIN 305 (554)
T ss_pred ccCcccccCCCCCcEEEEEEEEeCCce----------------eE--EEEEEEEEEEecC-CCCceeEEEeEEEeeeEEc
Confidence 257899999999998899888842221 12 2222221 1 0 000 11 44478899999
Q ss_pred CeEEEe----EEee--------------------------------ccCCcceEEEEEEeeccccceEeccceeccccCc
Q 001500 796 PFHVST----RIAD--------------------------------KCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGF 839 (1066)
Q Consensus 796 PF~vs~----~l~s--------------------------------~~~~~~~~lqv~l~~~sp~~l~i~~~~l~~~~~~ 839 (1066)
||+++. ++++ .+...+++|+..+.|.++|+|.|.+.+++..+..
T Consensus 306 PF~~~y~~~~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~~ 385 (554)
T PF07919_consen 306 PFEANYDFSPRFHPDPWDMPSPFDVDGSSDFQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAPEPLEIEDISLEVLSSN 385 (554)
T ss_pred CEEeeeeEEeeeccCCccCCcccccccccccccccccccccccccccccCCCeEEEccceecCCCceEEEEEEEEEecCC
Confidence 996655 4432 1333478999999999999999999999877643
Q ss_pred cccccCCCCCC--CCccceeecCCCeeeEEEEEE--cCCCCCchhhcccccCeeEEEEEecccccccCCCCceeeeccCc
Q 001500 840 VHTRQGDGRPT--SGFFPLVISSSSKAGILFSIC--LGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGA 915 (1066)
Q Consensus 840 ~~~~~~~~~p~--s~l~~l~l~~~~~~s~~f~l~--~~~~~~~~~~p~~~~~~~~~~~y~~~~~~~~~~~~p~~~~~~~~ 915 (1066)
........... ....+..+.+++.....|++. ..........+. ...+.+.++|++. ......
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~g~~~I~WrR~---~~~s~~--------- 452 (554)
T PF07919_consen 386 GGASCDVSSEDSSSPESGTVLQPGECREDQFCLRLDVQKLSLDDRRNV-TLLGSLVIKWRRN---SSNSSD--------- 452 (554)
T ss_pred CceeeeeccccccCCCccceeCccccccccccccccccccccccCccc-eeEEEEEEEEEEC---CCCCCC---------
Confidence 32211111000 022467788999999988843 222111111111 1125556666661 111111
Q ss_pred cccccccceeeeeeecCccccccceeeeccCCCCcceeCceEEEEEEEEEecC-ccchhccccCceEEEEEecCCCcEEE
Q 001500 916 EDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKD-FEENEASQRNDEVLYEVNANADNWMI 994 (1066)
Q Consensus 916 ~~~~~~~~~~tl~~l~~~~le~~~~~~~~p~~~~~~Rvgt~~~l~~~i~~l~~-~~~~~~~~~~~~L~yev~~~s~~wmv 994 (1066)
....|-+.+|+..++.++..+.+..|+. +++|++++|.|.|+|-+. .++ ..+.+ +++++|||
T Consensus 453 ------~~~~t~l~lP~~~v~~~~~~v~~~~p~~-~~~~~~~~l~~~I~N~T~~~~~-------~~~~m---e~s~~F~f 515 (554)
T PF07919_consen 453 ------PVVTTPLPLPRVNVPSSPLRVLASVPPS-AIVGEPFTLSYTIENPTNHFQT-------FELSM---EPSDDFMF 515 (554)
T ss_pred ------ceEEEEeecCceEccCCCcEEEEecCCc-cccCcEEEEEEEEECCCCccEE-------EEEEE---ccCCCEEE
Confidence 1233567888888999989888888886 999999999999998443 333 45544 88889999
Q ss_pred EecceeEEEeeCCCCCeEEEEEEEEEcccCCCCCCccccC
Q 001500 995 AGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLP 1034 (1066)
Q Consensus 995 sGrk~gvvs~~~~~~~~~~v~~~~~PL~aGyl~lP~l~L~ 1034 (1066)
+|.|+..+++.| +++|.+.|+++||.+|++.||+|+|.
T Consensus 516 sG~k~~~~~llP--~s~~~~~y~l~pl~~G~~~lP~l~v~ 553 (554)
T PF07919_consen 516 SGPKQTTFSLLP--FSRHTVRYNLLPLVAGWWILPRLKVR 553 (554)
T ss_pred ECCCcCceEECC--CCcEEEEEEEEEccCCcEECCcEEEe
Confidence 999999999998 99999999999999999999999874
No 4
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=99.65 E-value=5.2e-16 Score=156.76 Aligned_cols=89 Identities=31% Similarity=0.648 Sum_probs=76.0
Q ss_pred CcceeCceEEEEEEEEEecCccchhc---cccCceEEEEEecCCCcEEEEecceeEEEeeCCCCCeEEEEEEEEEcccCC
Q 001500 949 DGLRVGQLVSMKWRVERLKDFEENEA---SQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGY 1025 (1066)
Q Consensus 949 ~~~Rvgt~~~l~~~i~~l~~~~~~~~---~~~~~~L~yev~~~s~~wmvsGrk~gvvs~~~~~~~~~~v~~~~~PL~aGy 1025 (1066)
..||||++|+++++|+++..-..... ...+.+++|||.+|+++|+||||++|++++.. ++.+++.+.+|||.+||
T Consensus 25 ~~~~vGqpi~~~l~I~~~~~W~~~~~~~~~~~~~~~~yei~a~~~~WlV~Grrrg~f~~~~--~~~~~~~l~LIPL~~G~ 102 (147)
T PF12584_consen 25 PPCRVGQPIPAELRIKNSRKWSSEDQEESSNEDTEFMYEIVADSDNWLVSGRRRGVFSLSD--GSEHEIPLTLIPLRAGY 102 (147)
T ss_pred cceEeCCeEEEEEEEEEcccCCccccccccCCCccEEEEEecCCCcEEEeccCcceEEecC--CCeEEEEEEEEecccce
Confidence 35999999999999999543111111 22348999999999999999999999999977 99999999999999999
Q ss_pred CCCCccccCCccCC
Q 001500 1026 VRPPQLGLPGVEEA 1039 (1066)
Q Consensus 1026 l~lP~l~L~~~~~~ 1039 (1066)
|+||+|+|..+.++
T Consensus 103 L~lP~V~i~~~~~~ 116 (147)
T PF12584_consen 103 LPLPKVEIRPYDPS 116 (147)
T ss_pred ecCCEEEEEeccCC
Confidence 99999999999964
No 5
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=99.40 E-value=1.3e-12 Score=143.60 Aligned_cols=99 Identities=34% Similarity=0.473 Sum_probs=95.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Q 001500 370 SSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAEC 449 (1066)
Q Consensus 370 ~S~e~F~~~Yl~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C 449 (1066)
...-.+...+++|.++|+++|++.++.|++..++.+||.+||+.|||++|+++|..++..|+.|||+.|...+|..+.+|
T Consensus 148 e~~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 148 EKGVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC 227 (247)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcchHHHHHHHHhc
Q 001500 450 QKILNDEAGYLLSCVRLLS 468 (1066)
Q Consensus 450 ~k~L~~~~dYv~~~l~LLs 468 (1066)
++++++.++||.+|++|++
T Consensus 228 a~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 228 AKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 9999999999999999986
No 6
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=98.47 E-value=3.9e-07 Score=75.16 Aligned_cols=52 Identities=29% Similarity=0.593 Sum_probs=46.1
Q ss_pred ceEEEEEecCCCcEEEEecceeEEEeeCCCCCeEEEEEEEEEcccCCCCCCcccc
Q 001500 979 DEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGL 1033 (1066)
Q Consensus 979 ~~L~yev~~~s~~wmvsGrk~gvvs~~~~~~~~~~v~~~~~PL~aGyl~lP~l~L 1033 (1066)
.+|..|| +.+++|||||-++....|.+ |..+++-|+++||+|||+.||+|++
T Consensus 6 s~lli~V-~~n~~F~v~G~~~~~~~~~~--~~~~~i~~~Fipl~aG~~~LP~I~I 57 (57)
T PF12742_consen 6 SELLIEV-DKNDNFIVCGPKKMNFHMWP--GQKFEIPYNFIPLTAGFLKLPKINI 57 (57)
T ss_pred cceEEEE-cCCCceEEEccceeEEEEcc--CceEEEEEEEEEeehheecCccccC
Confidence 5566544 56999999999998888888 9999999999999999999999874
No 7
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=97.57 E-value=0.0079 Score=66.44 Aligned_cols=198 Identities=12% Similarity=0.131 Sum_probs=122.1
Q ss_pred CCcccCccEEEEEEEEcCcccc-cceEEEEec-CCCc--cccccccccccccccccccccccCccccccccccccccccc
Q 001500 645 SPLLINEAQWVGIIVQPIDYSL-KGAILQIDT-GPGL--TIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLH 720 (1066)
Q Consensus 645 ~plL~g~~q~V~l~V~sG~~~i-~~~~L~l~~-s~gl--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 720 (1066)
..+.+||.+..-|.++|..+.. +++.|++.. ++.. ++..... ..
T Consensus 8 G~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~-----------------~~--------------- 55 (249)
T PF06159_consen 8 GSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDN-----------------EN--------------- 55 (249)
T ss_pred CCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCC-----------------cc---------------
Confidence 5678999999999999988666 888888732 2222 3333221 00
Q ss_pred cccceeecCCCCCCceeEEEEEEEEeeccccCCccccCCCcccccccceeEEEEeeeccc-------ccceeeeEEEEEe
Q 001500 721 LHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVC-------HNQIFERTIAVHF 793 (1066)
Q Consensus 721 ~~~~~I~l~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~-------~~~i~~~~i~l~f 793 (1066)
..-+++.++++++....+--.. ...+.| .+.|.+.+. ....|-+-+....
T Consensus 56 ---~~~~~~~L~p~~~l~~iv~~~l----------------kE~G~h----~L~c~VsY~~~~~~~g~~~tfRK~ykF~v 112 (249)
T PF06159_consen 56 ---SDSPVASLAPGESLDFIVSHEL----------------KELGNH----TLVCTVSYTDPTETSGERRTFRKFYKFQV 112 (249)
T ss_pred ---ccccccccCCCCeEeEEEEEEe----------------eecCce----EEEEEEEEecCcccCCccceEeeeeEEeC
Confidence 0123345677776433321111 011223 444443221 1223556778888
Q ss_pred eCCeEEEeEEeeccCC------cceEEEEEEeeccccceEeccceeccccCccccccC--CCCCC-CCc-------ccee
Q 001500 794 TDPFHVSTRIADKCSD------GTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQG--DGRPT-SGF-------FPLV 857 (1066)
Q Consensus 794 ~~PF~vs~~l~s~~~~------~~~~lqv~l~~~sp~~l~i~~~~l~~~~~~~~~~~~--~~~p~-s~l-------~~l~ 857 (1066)
.+||.|.++++....+ ++.||.++|+|.+.-++.|.+..|+..++|...... +.... ... ....
T Consensus 113 ~~PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~ 192 (249)
T PF06159_consen 113 LNPLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPY 192 (249)
T ss_pred CCCcEEEEEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEeecCCCceeEecccccccccccccccccccCCcce
Confidence 9999999999994332 288999999999999999999999998887643222 10000 011 1245
Q ss_pred ecCCCeeeEEEEEEcCCCCCc----hhhcccccCeeEEEEEecccc
Q 001500 858 ISSSSKAGILFSICLGKTTPE----AEVEAVRRDSLLNIQYGISGK 899 (1066)
Q Consensus 858 l~~~~~~s~~f~l~~~~~~~~----~~~p~~~~~~~~~~~y~~~~~ 899 (1066)
+++++...++|++........ .++-..- +.+.|.|+..+.
T Consensus 193 L~P~d~~qylF~l~~~~~~~~~~~~~~~~~~l--GkL~I~WRs~~G 236 (249)
T PF06159_consen 193 LQPGDVRQYLFCLTPKPEGAQNDSGADGRTNL--GKLDIVWRSNMG 236 (249)
T ss_pred eCCCCEEEEEEEEEECCccccccccccCccee--eEEEEEEECCCC
Confidence 899999999999998875111 0111112 677888887764
No 8
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=97.23 E-value=0.053 Score=72.65 Aligned_cols=281 Identities=19% Similarity=0.192 Sum_probs=176.2
Q ss_pred HHHHHHhcCCcchhHHHhHHHHHHHHhcCC--HHHHHHHHHHHHHHHhh---------------CC-chhHHHHHHHHHH
Q 001500 386 AANNYHCSWWKRHGVVLDGEIAAVCFKHGN--YDQAAKSYEKVCALYSG---------------EG-WQDLLAEVLPNLA 447 (1066)
Q Consensus 386 Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gd--Y~kA~~~l~~~~~~Y~~---------------eg-W~~L~~~~L~~~a 447 (1066)
+.+.|..-|-+|-...+..+++..+...-- .+....++..+++.|+- .+ |..|--.+|+.++
T Consensus 451 lA~vy~~lG~~RK~AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I 530 (1185)
T PF08626_consen 451 LASVYGSLGFHRKKAFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECI 530 (1185)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHH
Confidence 347788888555444667777777754111 13233477777777764 12 9999999999999
Q ss_pred HHHHHhCCcchHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHh----cCCCCCccc---------------cC------
Q 001500 448 ECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAY----GEMKDPVPL---------------DV------ 502 (1066)
Q Consensus 448 ~C~k~L~~~~dYv~~~l~LLs~~~~~~~~~er~~~~~ell~~~~----s~l~~~v~~---------------~~------ 502 (1066)
.+.+.|++...-++.++.||..+...++..|+.+++.++.+.+. ....-.++| |+
T Consensus 531 ~~ae~l~D~~~~~~~~~~LL~~~~~~Ls~~EQ~~L~~~l~~~~~~~~~~~~~l~~~Ywdpflvr~v~l~~~iP~~~~i~~ 610 (1185)
T PF08626_consen 531 NIAEALGDFAGVLRFSSLLLRTYSPLLSPDEQIRLANNLQRTSAAANLGNSDLSAEYWDPFLVRDVKLESSIPLKPDILP 610 (1185)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhhhccCCcccccccCCCceeeeeecccCCCCccchhh
Confidence 99999999999999999899876566888888888888877661 100000011 11
Q ss_pred ---------------CCce-EeecC--CC---CCccccCCCCeEEEEEEEeCCCCceEeeEEEEEEEecccCCCCceEEE
Q 001500 503 ---------------SSLI-TFSGN--PG---PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALN 561 (1066)
Q Consensus 503 ---------------~~l~-~~~~~--~~---~p~~~~~~D~~~l~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~~l~ 561 (1066)
+.|+ .|... .. .......++.+.+.|++.|-|+-+|++++|+|.-.+. +.-..
T Consensus 611 ~~~~~~~~~~~~~~~~pFYnPf~k~~~~~~~~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv------~fes~ 684 (1185)
T PF08626_consen 611 PHPRKSEASSQSINKGPFYNPFSKKSSSSSNKKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGV------PFESY 684 (1185)
T ss_pred hhhhhhhhcccCCCCCCcCChhhcCCcccccccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCC------ccccc
Confidence 0011 11110 00 0112334678899999999999999999998876541 11111
Q ss_pred ecCceEe-eCCc-cEEEEEcCCCcceeEEEEEEEEEEcceeeee-eccccCC----------CC----CCc---cccccC
Q 001500 562 TSTATVL-KPGR-NTITVDLPPQKPGSYVLGALTGHIGRLRFRS-HSFSKVG----------PA----DSD---DFMSYE 621 (1066)
Q Consensus 562 s~~~v~L-~PG~-Nki~L~~~~~~~G~y~l~~l~i~ig~l~F~s-~~f~~~~----------~~----~~~---~~~s~~ 621 (1066)
...+.| .|.. ..++|...+...|...+..+.+++++..=.. ..+.... .. ..+ ..+..+
T Consensus 685 -~~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~ 763 (1185)
T PF08626_consen 685 -PVSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCREEFFPIFKSEWGSIKGKKLKDKFRKGSRLDKPSPPLESE 763 (1185)
T ss_pred -eeeeEecCCCcceEEEEEEEECccceEEEEEEEEEEcccccceecccCcccchhhhhhccccccccccccccccccccc
Confidence 122344 6655 4467888889999999999999999853110 1111100 00 000 000000
Q ss_pred --CCCCCeEEEEcCCCeeEEEec----cCCCcccCccEEEEEEEEcCcccc-cceEEEE
Q 001500 622 --KPTRPILKVFNPRPLVDLAAA----ISSPLLINEAQWVGIIVQPIDYSL-KGAILQI 673 (1066)
Q Consensus 622 --~~~~p~~~v~~~~p~v~l~~~----~~~plL~g~~q~V~l~V~sG~~~i-~~~~L~l 673 (1066)
....-.+.|.|+.|.+.+... -+--++-||.+.+.|+++|-+..- +...+++
T Consensus 764 ~~~~~~l~i~VIp~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf 822 (1185)
T PF08626_consen 764 SPKTKSLSIKVIPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSF 822 (1185)
T ss_pred ccccCcceEEEECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEE
Confidence 112257889999999988874 112468899999999999988332 5555555
No 9
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.14 E-value=0.046 Score=61.50 Aligned_cols=89 Identities=21% Similarity=0.208 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcch
Q 001500 380 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKH-GNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 458 (1066)
Q Consensus 380 l~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~-gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~d 458 (1066)
++..++|++.|...||.+.|-.+..++|.+|-.. |+|++|+.+|..++..|..+|.......++..++.++-++++-++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 4567889999999999999999999999999999 999999999999999999999999999999999999999997776
Q ss_pred HHHHHHHHhc
Q 001500 459 YLLSCVRLLS 468 (1066)
Q Consensus 459 Yv~~~l~LLs 468 (1066)
-+...-++..
T Consensus 174 A~~~~e~~~~ 183 (282)
T PF14938_consen 174 AIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 10
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.66 E-value=0.34 Score=42.93 Aligned_cols=62 Identities=31% Similarity=0.281 Sum_probs=50.6
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHhCCcchHHHH
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAGYLLS 462 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~eg-W~~L~~~~L~~~a~C~k~L~~~~dYv~~ 462 (1066)
.+...||..|+.+|+|++|+.+|..++..+..-| .+.....++..++.|+..+++-++-+..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 68 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567899999999999999999999999977666 5555688999999999999987744443
No 11
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=92.90 E-value=0.0032 Score=78.68 Aligned_cols=245 Identities=24% Similarity=0.190 Sum_probs=168.1
Q ss_pred CCCCCCCccHHHHHHHHHHhhcCcccccccccCCCCCCChhhHHHHHhhhhhccccCccccccc----CCCCCccccCCC
Q 001500 242 WPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFD----GSGPDVSLRMSP 317 (1066)
Q Consensus 242 ~~~~~~~~~se~l~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ls~g~~~~~~~----~~g~~~~~~~~~ 317 (1066)
||+.+.++.|+-..-+++..+++++.+||+..++..+..+....|-++++++.+..|+.-..++ +.|--.....+.
T Consensus 426 r~~~~ke~~S~~~k~~~~~~~~~s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~~~~p~~~v~~~t~~~k~~ 505 (1156)
T KOG1931|consen 426 RPTLTKEALSLFNKLEEALQRIVSFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSILKIPQKAVDSLTHCLKLD 505 (1156)
T ss_pred ccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhhhcccchhhhhhhccCcch
Confidence 6666677777766556678999999999999999999999999999898888888887765554 233222222222
Q ss_pred CccccccccccCCCCCC-CCCCCCcchhhhHH--HHhhhhhhcccCChhhHHHhhcCHHHHHHHHHHHHHHHHHHHHhcC
Q 001500 318 SNKVQAVSMSRTNSSPG-FESSIDRPMRLAEI--FVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSW 394 (1066)
Q Consensus 318 ~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~--~~~~~~~~~~~is~~~LkeAL~S~e~F~~~Yl~Lt~~Ai~~yk~~~ 394 (1066)
.++.-.-.+++|...++ +.+..+.+.++++. ++|+.|+..-.+....+.+.+++-+.|...|..++..+...|..-.
T Consensus 506 ~~e~wa~~~s~t~~~l~~f~~~L~~~~~~~k~~~~ia~~~~L~~~~r~h~~~k~l~~~~~~~~s~~hl~~~~~~n~~v~~ 585 (1156)
T KOG1931|consen 506 LLEIWAEPVSATLVLLANFLNILGLCKAYDKTESSIAKFHDLQELNRKHLMYKLLGLFEVFLNSKVHLARANVHNYEVNL 585 (1156)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHHHHhHHHhhhcchhhhhcccchhhhhhh
Confidence 23344455555555554 44445556666666 8899988877777777888999999999999999999888877654
Q ss_pred CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhccccCCC
Q 001500 395 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLF 474 (1066)
Q Consensus 395 R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~~~~~ 474 (1066)
.. +.+.+.++.+.- ..+.++-++.-+..+.-.|. .....+..+.|..-+....+|+..+..+.+-.
T Consensus 586 ~~-h~~v~Diev~~~--~~~~~~~~~~s~~~v~~L~~-------~~~v~~~~~~C~di~~~~~~l~s~~v~l~gi~---- 651 (1156)
T KOG1931|consen 586 DS-HGFVLDIEVVTM--KVKCMDGDVISQGPVDFLYK-------SIVVNKLILECRDIMYGEAELLSFEVILEGIT---- 651 (1156)
T ss_pred hh-ccccceeEEeec--cceeecceeeeccchHhhHh-------hhhhhhHHHHHHhhccchhhheeeeeEeeccc----
Confidence 32 444444444444 55666666666666666666 46678889999999999999998888666422
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCccc
Q 001500 475 STKERQAFQSEVISLAYGEMKDPVPL 500 (1066)
Q Consensus 475 ~~~er~~~~~ell~~~~s~l~~~v~~ 500 (1066)
..+++....+++....+..+..+.+.
T Consensus 652 ~~~~~~~~q~e~~s~~~iem~~~tk~ 677 (1156)
T KOG1931|consen 652 FVKEFPVNQDELISLPEIEMKNPTKV 677 (1156)
T ss_pred cccccccchhhhccchhheeecCccc
Confidence 23334455666665555444444443
No 12
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.60 E-value=0.66 Score=51.83 Aligned_cols=85 Identities=13% Similarity=0.036 Sum_probs=67.7
Q ss_pred HHHHHHHhc----CCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHH
Q 001500 385 GAANNYHCS----WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 460 (1066)
Q Consensus 385 ~Ai~~yk~~----~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv 460 (1066)
.|+..|... .....+.....-+|..||..|+|++|+..|..++..|-.+.|. ...+..++.|+..+++.++..
T Consensus 161 ~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~---~dAl~klg~~~~~~g~~~~A~ 237 (263)
T PRK10803 161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA---ADAMFKVGVIMQDKGDTAKAK 237 (263)
T ss_pred HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch---hHHHHHHHHHHHHcCCHHHHH
Confidence 444444442 3334445667999999999999999999999999999999988 677888889999999999888
Q ss_pred HHHHHHhccccC
Q 001500 461 LSCVRLLSLDKG 472 (1066)
Q Consensus 461 ~~~l~LLs~~~~ 472 (1066)
.+.-+++..++.
T Consensus 238 ~~~~~vi~~yP~ 249 (263)
T PRK10803 238 AVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHCcC
Confidence 888777776543
No 13
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.17 E-value=0.15 Score=53.88 Aligned_cols=213 Identities=14% Similarity=0.146 Sum_probs=116.9
Q ss_pred EEEEEeeCCeEEEeEEeecc-----CCcceEEEEEEeeccccceEeccceeccccCcc-----c-cccCCCCCCCCccce
Q 001500 788 TIAVHFTDPFHVSTRIADKC-----SDGTLLLQVILHSQVNASLTIYDAWLDLQDGFV-----H-TRQGDGRPTSGFFPL 856 (1066)
Q Consensus 788 ~i~l~f~~PF~vs~~l~s~~-----~~~~~~lqv~l~~~sp~~l~i~~~~l~~~~~~~-----~-~~~~~~~p~s~l~~l 856 (1066)
-+......|.+|+++|+++- .++..||...+++.+..+.-+...+|+-+--.. | .+.+|.-.+ -..+-
T Consensus 100 ffkf~v~kpidvktkfynaesdlssv~~dvfleaqien~s~a~mflekv~ldps~~ynvt~i~~~~e~gdcvst-fg~~~ 178 (348)
T KOG2625|consen 100 FFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLEAQIENMSNANMFLEKVELDPSIHYNVTEIAHEDEAGDCVST-FGSGA 178 (348)
T ss_pred hccccccccccccceeecccccccccchhhhhhhhhhcccccchhhhhhccCchheecceeecchhhccccccc-ccccc
Confidence 45566788999999999962 223459999999999888877777775332100 1 112221000 01122
Q ss_pred eecCCCeeeEEEEEEcCCCCCchhhcccc---cCeeEEEEEecccccccCCCCceeeeccCccccccccceeeeeeecCc
Q 001500 857 VISSSSKAGILFSICLGKTTPEAEVEAVR---RDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRP 933 (1066)
Q Consensus 857 ~l~~~~~~s~~f~l~~~~~~~~~~~p~~~---~~~~~~~~y~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~tl~~l~~~ 933 (1066)
-+++...--++||+..+....+.. .|.+ .-+.+.+.|+-+..+..+.. +.... |..+-|- -..|
T Consensus 179 ~lkp~d~rq~l~cl~pk~d~~~~~-gi~k~lt~igkldi~wktnlgekgrlq---ts~lq-----riapgyg-dvrl--- 245 (348)
T KOG2625|consen 179 LLKPKDIRQFLFCLKPKADFAEKA-GIIKDLTSIGKLDISWKTNLGEKGRLQ---TSALQ-----RIAPGYG-DVRL--- 245 (348)
T ss_pred ccCccchhhheeecCchHHHHHhh-ccccccceeeeeEEEeeccccccccch---HHHHH-----hhcCCCC-ceEE---
Confidence 356677777899987653211111 1111 01455666665543211010 00000 0001111 1122
Q ss_pred cccccceeeeccCCCCcceeCceEEEEEEEEEecCccchhccccCceEEEEEe-cCCCcEEEEecc---eeEEEeeCCCC
Q 001500 934 VLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVN-ANADNWMIAGRK---RGYVSLPTKQG 1009 (1066)
Q Consensus 934 ~le~~~~~~~~p~~~~~~Rvgt~~~l~~~i~~l~~~~~~~~~~~~~~L~yev~-~~s~~wmvsGrk---~gvvs~~~~~~ 1009 (1066)
.+|..|+ ++-+-++..+..+|++..+.. .+|..|.- .++..-.+||-+ -|- +.| +
T Consensus 246 sle~~p~---------~vdleepf~iscki~ncsera--------ldl~l~l~~~nnrhi~~c~~sg~qlgk--l~p--s 304 (348)
T KOG2625|consen 246 SLEAIPA---------CVDLEEPFEISCKITNCSERA--------LDLQLELCNPNNRHIHFCGISGRQLGK--LHP--S 304 (348)
T ss_pred Eeecccc---------ccccCCCeEEEEEEcccchhh--------hhhhhhhcCCCCceeEEeccccccccC--CCC--c
Confidence 4555553 344457777888888766543 23333332 233346666654 333 566 8
Q ss_pred CeEEEEEEEEEcccCCCCCCccccCC
Q 001500 1010 SRIVISILCVPLLAGYVRPPQLGLPG 1035 (1066)
Q Consensus 1010 ~~~~v~~~~~PL~aGyl~lP~l~L~~ 1035 (1066)
....+.++++|-+.|.+.+--+|++.
T Consensus 305 ~~l~~al~l~~~~~giqsisgiritd 330 (348)
T KOG2625|consen 305 QHLCFALNLFPSTQGIQSISGIRITD 330 (348)
T ss_pred ceeeeEEeeccchhcceeecceEeeh
Confidence 88899999999999999999998754
No 14
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=0.87 Score=49.28 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchH
Q 001500 381 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKH-GNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 459 (1066)
Q Consensus 381 ~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~-gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dY 459 (1066)
+-.+.||+.|.+-||.|+|..-..+||++|=.- -|+++|+.+|....++|..+--..+....+...+.-.-+|++-...
T Consensus 94 ~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~A 173 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKA 173 (288)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999998755 8999999999999999999988877766555444444444443333
Q ss_pred HH
Q 001500 460 LL 461 (1066)
Q Consensus 460 v~ 461 (1066)
+.
T Consensus 174 i~ 175 (288)
T KOG1586|consen 174 ID 175 (288)
T ss_pred HH
Confidence 33
No 15
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.03 E-value=33 Score=44.27 Aligned_cols=215 Identities=17% Similarity=0.190 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHH-------------HHHhcCCcchhH-HHhHHHHH-HHH------hcCCHHHHHHHHHHHHHHHhh
Q 001500 374 EFEQKYLELTKGAAN-------------NYHCSWWKRHGV-VLDGEIAA-VCF------KHGNYDQAAKSYEKVCALYSG 432 (1066)
Q Consensus 374 ~F~~~Yl~Lt~~Ai~-------------~yk~~~R~Rsa~-~L~~dLA~-l~y------~~gdY~kA~~~l~~~~~~Y~~ 432 (1066)
.|...|++++..-++ +|...|+.|... ....-+-. |+. ..+||..-...+-..++-|+.
T Consensus 464 ~~~~kyl~l~n~~m~~r~q~qi~s~~a~myre~g~~rkqaf~~rlsv~~~L~~T~~~~~~~~dyKt~~~~l~~lLe~~g~ 543 (1235)
T KOG1953|consen 464 ELVSKYLSLTNVLMETRRQNQIKSTMAGMYREVGASRKQAFFKRLSVCNILPLTSEICQEYGDYKTDGSLLNPLLEKWGS 543 (1235)
T ss_pred HHHHHHhhhchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhccCccccccHHHHHHHHHhccc
Confidence 455566777666555 555566555321 11111111 222 345565555555555555532
Q ss_pred -----------CCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhcC-----CCC
Q 001500 433 -----------EGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGE-----MKD 496 (1066)
Q Consensus 433 -----------egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~~~~~~~~er~~~~~ell~~~~s~-----l~~ 496 (1066)
.-|..|--.+|..+.....+.|+-+.-++....||..+.-.++..+...+++++.+.+... +-+
T Consensus 544 e~~~~~d~~sq~~w~~LQ~kvL~eii~~a~ragd~~aa~~~~s~Ll~~yypll~sS~q~~Lfk~l~n~~~~~~s~ts~~~ 623 (1235)
T KOG1953|consen 544 EAKINVDDPSQSTWSNLQFKVLNEIISLADRAGDYRAALLLISLLLLTYYPLLSSSQQISLFKALRNTYLFASSATSYWD 623 (1235)
T ss_pred cccCCcCccccccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHhHHhhccccccccc
Confidence 2299988888888877777777776555555556665544466666667788877644310 111
Q ss_pred Cccc-------c---CC--------------------------CceEeec-------CC-CCCccccCCCCeEEEEEEEe
Q 001500 497 PVPL-------D---VS--------------------------SLITFSG-------NP-GPPLELCDGDPGTLSVTVWS 532 (1066)
Q Consensus 497 ~v~~-------~---~~--------------------------~l~~~~~-------~~-~~p~~~~~~D~~~l~V~l~s 532 (1066)
|+.+ | ++ .-+.|.. .. .+.+....+++..+.|+++|
T Consensus 624 ~i~~~d~~iild~~~lt~fPliss~~vlel~~Nrart~~pn~~e~spFiytpfsk~~dN~~~~LvwVvdepvef~v~v~N 703 (1235)
T KOG1953|consen 624 PIHINDPVIILDPFMLTDFPLISSSEVLELIHNRARTGLPNSIEKSPFIYTPFSKRQDNNQSKLVWVVDEPVEFSVYVRN 703 (1235)
T ss_pred ceEecCccEecCcccccccccccChhHHHHHhcccccCCCcccccCceEeccccccccCccceEEEEeCCceEEEEEEcC
Confidence 1111 0 00 0001111 11 11222334678889999999
Q ss_pred CCCCceEeeEEEEEEEecccCCCCceEEEecCceEeeCCc--cEEEEEcCCCcceeEEEEEEEEE
Q 001500 533 GFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGR--NTITVDLPPQKPGSYVLGALTGH 595 (1066)
Q Consensus 533 ~lP~~I~~d~v~l~L~~~~~~~~~~~~l~s~~~v~L~PG~--Nki~L~~~~~~~G~y~l~~l~i~ 595 (1066)
-+.-+++++.+.|.-.+. +-+.. .-...+.|.. -+|++..-+...|-..+.-.++.
T Consensus 704 p~~fdl~V~Di~L~~egv----nF~~~---~vs~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~ 761 (1235)
T KOG1953|consen 704 PLSFDLEVQDIHLETEGV----NFKCS---HVSFTMPPNSIAERIRLTGTPTETGPLHIVGYRVK 761 (1235)
T ss_pred ccceeEEEeeEEEEeccc----cceee---eeeeecCcccccceEEEeccccccCceeeeeEEEE
Confidence 999999999988776541 11111 1123344443 46788888888886444444444
No 16
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.36 E-value=4.6 Score=45.45 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHhCCcchH
Q 001500 381 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW-QDLLAEVLPNLAECQKILNDEAGY 459 (1066)
Q Consensus 381 ~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW-~~L~~~~L~~~a~C~k~L~~~~dY 459 (1066)
++-++|+..|...++.+.+..+..++|.++.+.|+|++|..+|..+...+.+.+= ..=....+...+-|+-.+++...-
T Consensus 136 ~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 136 EYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 4556788999999988999999999999999999999999999999998876542 211233433444466666554332
Q ss_pred HHHHHHHhccccCCCCHHHHHHHHHHHHHHHhc
Q 001500 460 LLSCVRLLSLDKGLFSTKERQAFQSEVISLAYG 492 (1066)
Q Consensus 460 v~~~l~LLs~~~~~~~~~er~~~~~ell~~~~s 492 (1066)
-+..-+..+.+.+-.+.+| -.+..+|++...+
T Consensus 216 ~~~~~~~~~~~~~F~~s~E-~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSRE-YKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCCCcHH-HHHHHHHHHHHHh
Confidence 2222222222222222333 2578888876653
No 17
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.27 E-value=2.5 Score=41.61 Aligned_cols=66 Identities=18% Similarity=0.068 Sum_probs=57.2
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhcc
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 469 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~ 469 (1066)
.+.+++|.-+-+.|+|++|+..|+.....|.+..|+ ..+...++-|+..+++.++=+...+..|+.
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~---~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEFPDDELN---AALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999888887 444455677999999999999999988763
No 18
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=87.31 E-value=1.3 Score=37.58 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Q 001500 405 EIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 468 (1066)
Q Consensus 405 dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs 468 (1066)
++|..++++|+|++|...|..++..+-. ....+..++.|+...++.++=+...-+++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6789999999999999999999998844 367788888899888888876665555544
No 19
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=87.22 E-value=3.9 Score=38.36 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=53.1
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhccc
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 470 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~ 470 (1066)
.....+|..++..|+|+.|..+|..++..|....+. ..++..++.|+.++++.++-+...-+++...
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA---PDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc---cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 456779999999999999999999999887654433 3456778888889999887777776666544
No 20
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.02 E-value=1.2 Score=33.80 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVCALYS 431 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~~~Y~ 431 (1066)
..||.+|.++|+|++|+.+|..++..-.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999775443
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=85.70 E-value=2.4 Score=37.46 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 001500 382 LTKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 431 (1066)
Q Consensus 382 Lt~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~ 431 (1066)
..++|+..+...|... ........||..|+.+|+|++|+.+|+.+++.+.
T Consensus 27 ~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 27 YYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4455556655666433 3456789999999999999999999999998764
No 22
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.70 E-value=2.4 Score=36.41 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=45.1
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhC-CcchHHHHHHHH
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN-DEAGYLLSCVRL 466 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~-~~~dYv~~~l~L 466 (1066)
....+|..+++.|+|++|+.+|..++..-..+ ..++-..+.|+.+++ +.++-+..+-+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 45789999999999999999999999975443 447788888998888 455444444333
No 23
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.08 E-value=5 Score=44.63 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=68.5
Q ss_pred HHHHHHHHh-cCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHH
Q 001500 384 KGAANNYHC-SWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 462 (1066)
Q Consensus 384 ~~Ai~~yk~-~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~ 462 (1066)
+.++..|.+ +...--+-....=|++.+|.+|||..|..+|-.++..|..+.|. ..+|..++.|+..|+..++-=.+
T Consensus 161 ~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA---pdallKlg~~~~~l~~~d~A~at 237 (262)
T COG1729 161 EQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA---PDALLKLGVSLGRLGNTDEACAT 237 (262)
T ss_pred HHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhcCHHHHHHH
Confidence 334444443 33344444567889999999999999999999999999999998 78999999999999999987777
Q ss_pred HHHHhccccC
Q 001500 463 CVRLLSLDKG 472 (1066)
Q Consensus 463 ~l~LLs~~~~ 472 (1066)
.-++...+++
T Consensus 238 l~qv~k~YP~ 247 (262)
T COG1729 238 LQQVIKRYPG 247 (262)
T ss_pred HHHHHHHCCC
Confidence 7777776654
No 24
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=83.92 E-value=0.95 Score=38.72 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=37.0
Q ss_pred HHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhh-CCchhH
Q 001500 384 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG-EGWQDL 438 (1066)
Q Consensus 384 ~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~-egW~~L 438 (1066)
+.|+..|+++- +...-..+...+|..|++.|+|++|..+|..+.....+ ..|+.+
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45556666541 22223355678999999999999999999999888777 334433
No 25
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.26 E-value=1.8 Score=31.28 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=27.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCALYSG 432 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~ 432 (1066)
...+|..|+..|++++|..+|..+...|-+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 467999999999999999999999988754
No 26
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=81.77 E-value=2 Score=38.80 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=39.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHH
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 463 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~ 463 (1066)
...+|..||+.|+|++|..+++. .. ..... ....-++++|+.+|++.++-+.+.
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~-~~~~~-----~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LK-LDPSN-----PDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HT-HHHCH-----HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hC-CCCCC-----HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44599999999999999999988 22 22222 344556699999999988776643
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=81.60 E-value=9.1 Score=43.55 Aligned_cols=89 Identities=25% Similarity=0.231 Sum_probs=62.7
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHH
Q 001500 365 LLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLP 444 (1066)
Q Consensus 365 LkeAL~S~e~F~~~Yl~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~ 444 (1066)
|-....-++.+.+ =.++.++|...-++|- +.++.+|.++...|+|++|+..+..+...= ....+.++.
T Consensus 186 LAq~~~~~~~~d~-A~~~l~kAlqa~~~cv------RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-----~~yl~evl~ 253 (389)
T COG2956 186 LAQQALASSDVDR-ARELLKKALQADKKCV------RASIILGRVELAKGDYQKAVEALERVLEQN-----PEYLSEVLE 253 (389)
T ss_pred HHHHHhhhhhHHH-HHHHHHHHHhhCccce------ehhhhhhHHHHhccchHHHHHHHHHHHHhC-----hHHHHHHHH
Confidence 3333333445554 2345556656555554 457889999999999999999999998632 223578999
Q ss_pred HHHHHHHHhCCcchHHHHHHH
Q 001500 445 NLAECQKILNDEAGYLLSCVR 465 (1066)
Q Consensus 445 ~~a~C~k~L~~~~dYv~~~l~ 465 (1066)
++.+|+.++|+.++...-..+
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999866554443
No 28
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=80.91 E-value=5.3 Score=34.11 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=37.8
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHH
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 461 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~ 461 (1066)
.+...+|..|++.|++++|..+|..++....... .++..++.|+...++.++-..
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hHHHHHHHHHHHHHhHHHHHH
Confidence 4567888888889999999999888887665554 344555556655555444333
No 29
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.21 E-value=3.2 Score=30.25 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCALYS 431 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~ 431 (1066)
...+|..|++.|+|++|...|..++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46799999999999999999999987654
No 30
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.70 E-value=3.6 Score=31.31 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.4
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 432 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~ 432 (1066)
....||..|+.+|+|++|..++..++..+..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 3678999999999999999999999987653
No 31
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.90 E-value=17 Score=33.74 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=44.8
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQK 451 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k 451 (1066)
.....+|.+++..|++++|+..+..++.--++.+...-...+|.-++++.+
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 446779999999999999999999999999999999888888877777654
No 32
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=76.80 E-value=5 Score=29.45 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=24.5
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYEKVCALY 430 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y 430 (1066)
+...+|..|+.+|+|++|+..|+.++...
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45689999999999999999999998753
No 33
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=73.24 E-value=7.1 Score=33.23 Aligned_cols=53 Identities=26% Similarity=0.235 Sum_probs=44.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhcc
Q 001500 411 FKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 469 (1066)
Q Consensus 411 y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~ 469 (1066)
+..|+|++|+.+|..++..+..+ ..+...+++|+.+.|+.++-..++-+++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999999998886 566678999999999999988877766653
No 34
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=72.88 E-value=11 Score=31.91 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001500 383 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALY 430 (1066)
Q Consensus 383 t~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y 430 (1066)
.+.|+..|...= +..........+|..++++|+|++|..+|..++..+
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345666666652 223445678899999999999999999999988754
No 35
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=72.82 E-value=9.2 Score=32.56 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=41.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRL 466 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~L 466 (1066)
...+|..++..|+|++|..+|..++..+.... .....++.|+...++.++-+..+-+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998776553 34455666666666655544444333
No 36
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.74 E-value=8.2 Score=28.14 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.1
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYEKVCALYS 431 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~ 431 (1066)
+...+|.+|.++|++++|..+|..+...-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456799999999999999999999987643
No 37
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=70.61 E-value=6.1 Score=42.20 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=44.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcc
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEA 457 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~ 457 (1066)
-..+|.+|+++|.|..|+..|..++..|-+..|. -..|..+++++.+||..+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~---~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA---EEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH---HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH---HHHHHHHHHHHHHhCChH
Confidence 4678999999999999999999999999999886 568888899999988765
No 38
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=67.50 E-value=13 Score=32.11 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=45.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Q 001500 406 IAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 468 (1066)
Q Consensus 406 LA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs 468 (1066)
|+..|+++++|++|+..++.++.....+ ...+..++.|+.++++..+=+..+-+.+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678999999999999999999886664 45566688899999988877776666665
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=66.83 E-value=15 Score=39.44 Aligned_cols=60 Identities=23% Similarity=0.180 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRL 466 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~L 466 (1066)
..+|.+|+++|+|++|...|..+...|....|. ...+......+.++++.++.+.+.-.|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPAT---EEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 478999999999999999999999999886554 566778888999999999888755443
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=66.10 E-value=45 Score=43.05 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHh-----hCCchhHHHHHHHHHHHHHHHhC
Q 001500 380 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS-----GEGWQDLLAEVLPNLAECQKILN 454 (1066)
Q Consensus 380 l~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~-----~egW~~L~~~~L~~~a~C~k~L~ 454 (1066)
+.....|+..+-..++. .---+.-.+|.+||+.|++++|...|.++..... ++| ..+...+.=.+++|++++.
T Consensus 433 L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-KSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-ccchhHHHHHHHHHHHhhh
Confidence 55566666666666655 3334567899999999999999999999988744 333 3344455666777777764
Q ss_pred Ccc--------------hHHHHHHHHhccccCCCCHHHHHHHHHHHHHH
Q 001500 455 DEA--------------GYLLSCVRLLSLDKGLFSTKERQAFQSEVISL 489 (1066)
Q Consensus 455 ~~~--------------dYv~~~l~LLs~~~~~~~~~er~~~~~ell~~ 489 (1066)
+-. .|+..-++|++-........+-..++++.+++
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 433 45554555543221112233344556665543
No 41
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=65.03 E-value=11 Score=32.41 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 431 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~ 431 (1066)
.+..+.|.+|++.|+|++|...|..++..-.
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5678899999999999999999999986543
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=64.92 E-value=42 Score=32.48 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=43.8
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 468 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs 468 (1066)
.+...+|..++..|+|..|..+|..+...... . ......++.|+..+++.++=+...-+.+.
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPD-D-----PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678899999999999999999998876433 2 33445567788888887755444444443
No 43
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.54 E-value=9.6 Score=25.66 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCAL 429 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~ 429 (1066)
...+|..|++.|+|++|...|..+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 467899999999999999999988764
No 44
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=63.07 E-value=20 Score=39.57 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=67.2
Q ss_pred hHHHhhcCHHHHHHHHHH--HHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHH
Q 001500 364 NLLKSLSSVEEFEQKYLE--LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAE 441 (1066)
Q Consensus 364 ~LkeAL~S~e~F~~~Yl~--Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~ 441 (1066)
..+.|+.+=+.|-+.|=+ ....|-..-..+ |.|-|.+ -..+|.+|+++|+|..|+.-|..++..|.+.... ..
T Consensus 139 ~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l-~~~la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~---~e 213 (243)
T PRK10866 139 HARAAFRDFSKLVRGYPNSQYTTDATKRLVFL-KDRLAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT---RD 213 (243)
T ss_pred HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH---HH
Confidence 345565555555555432 222221111122 2333332 4589999999999999999999999999999885 78
Q ss_pred HHHHHHHHHHHhCCcchHHHHHH
Q 001500 442 VLPNLAECQKILNDEAGYLLSCV 464 (1066)
Q Consensus 442 ~L~~~a~C~k~L~~~~dYv~~~l 464 (1066)
.|..+.+.+.+||..+++-.+.-
T Consensus 214 al~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 214 ALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 88888999999999998877665
No 45
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=61.97 E-value=25 Score=36.88 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Q 001500 384 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 433 (1066)
Q Consensus 384 ~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~e 433 (1066)
+.-+..|+.-.-.-+++....++|.+|++.||+++|+..|..+.++....
T Consensus 20 e~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~ 69 (177)
T PF10602_consen 20 EAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP 69 (177)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH
Confidence 33345566544445777889999999999999999999999977765444
No 46
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=61.94 E-value=22 Score=42.40 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=51.7
Q ss_pred cchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCc
Q 001500 396 KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 456 (1066)
Q Consensus 396 ~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~ 456 (1066)
.-+....+..||-++|-.|||+.|+++|+.+-++|..++=|.-....++|++-|+-..+..
T Consensus 204 ~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~ 264 (414)
T PF12739_consen 204 ADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQS 264 (414)
T ss_pred CCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCC
Confidence 3467778889999999999999999999999999998875555566889999999887644
No 47
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=60.97 E-value=48 Score=33.07 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=52.0
Q ss_pred cCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHH
Q 001500 393 SWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 463 (1066)
Q Consensus 393 ~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~ 463 (1066)
.+...-+......+|..++..|+|++|...|..+.....+..+. .....++++|+...++.++=+.+.
T Consensus 41 ~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~---~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 41 YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK---PLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34455666778889999999999999999999999977555554 444667788888888777655543
No 48
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=59.20 E-value=52 Score=38.44 Aligned_cols=78 Identities=17% Similarity=0.038 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHH
Q 001500 385 GAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 463 (1066)
Q Consensus 385 ~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~ 463 (1066)
.|+..|.++=+.. ....+...+|..|+++|+|+.|+..+..++...... ...+..++.|+..+++-++-+..+
T Consensus 20 ~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 20 LAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4445555542111 112456899999999999999999999999876543 334556677888888877666655
Q ss_pred HHHhc
Q 001500 464 VRLLS 468 (1066)
Q Consensus 464 l~LLs 468 (1066)
-+.+.
T Consensus 94 ~~al~ 98 (356)
T PLN03088 94 EKGAS 98 (356)
T ss_pred HHHHH
Confidence 55554
No 49
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=59.00 E-value=16 Score=28.75 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 434 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~eg 434 (1066)
...+|..|.+.|++++|...|..++...-++-
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 46799999999999999999999999877653
No 50
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=55.95 E-value=51 Score=35.11 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=38.6
Q ss_pred HHHHHHHHhc----CCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Q 001500 384 KGAANNYHCS----WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI 452 (1066)
Q Consensus 384 ~~Ai~~yk~~----~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~ 452 (1066)
+.|+..|... ...+.+......+|..||..|||..|...|...+..|-.+... -..+-+.+.|+.+
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~---~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA---DYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch---hhHHHHHHHHHHH
Confidence 4455555543 3456777777777777777777777777777777777776543 2334444444433
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=55.50 E-value=1.1e+02 Score=37.68 Aligned_cols=100 Identities=20% Similarity=0.088 Sum_probs=71.5
Q ss_pred hhHHHhhcCHHHHHHHHHHHHHHHHHHHHhc--CCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHh--hCCchhH
Q 001500 363 PNLLKSLSSVEEFEQKYLELTKGAANNYHCS--WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS--GEGWQDL 438 (1066)
Q Consensus 363 ~~LkeAL~S~e~F~~~Yl~Lt~~Ai~~yk~~--~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~--~egW~~L 438 (1066)
..|-.++-....|.+. ..+++.|++-|++- .....+.....++|..+.++++|+.|..||++..+-|. -.-=+..
T Consensus 287 ~nLa~ly~~~GKf~EA-~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEA-EEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHhccCChHHH-HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 3444444555555544 34777888888882 12334445578999999999999999999999999887 2333446
Q ss_pred HHHHHHHHHHHHHHhCCcchHHHHH
Q 001500 439 LAEVLPNLAECQKILNDEAGYLLSC 463 (1066)
Q Consensus 439 ~~~~L~~~a~C~k~L~~~~dYv~~~ 463 (1066)
...+-..+++|++++|+-.+-.++.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHH
Confidence 6788999999999999987544443
No 52
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=55.44 E-value=90 Score=31.29 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHH
Q 001500 384 KGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 462 (1066)
Q Consensus 384 ~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~ 462 (1066)
+.|+..|..+-+.. .-......+|..+...|+|++|...|..++..=.. + ...+..+..|+..+|+.++=+..
T Consensus 41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~--~----~~a~~~lg~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS--H----PEPVYQTGVCLKMMGEPGLAREA 114 (144)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--C----cHHHHHHHHHHHHcCCHHHHHHH
Confidence 44666666643222 11234578999999999999999999999975332 2 45667778899999999987777
Q ss_pred HHHHhcc
Q 001500 463 CVRLLSL 469 (1066)
Q Consensus 463 ~l~LLs~ 469 (1066)
+-+.+..
T Consensus 115 ~~~Al~~ 121 (144)
T PRK15359 115 FQTAIKM 121 (144)
T ss_pred HHHHHHh
Confidence 7666653
No 53
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=54.95 E-value=19 Score=30.72 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCC-cchhHHHhHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 001500 384 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHG-NYDQAAKSYEKVCA 428 (1066)
Q Consensus 384 ~~Ai~~yk~~~R-~Rsa~~L~~dLA~l~y~~g-dY~kA~~~l~~~~~ 428 (1066)
+.|+..|+++=+ -..-..+...+|..|+.+| +|++|...|..++.
T Consensus 20 ~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445555555411 1222357899999999999 79999999998875
No 54
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=52.79 E-value=58 Score=31.68 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCC--chh--HHHHHHHHHHHHHHHhCCcchHHHHHHHHhccc
Q 001500 406 IAAVCFKHGNYDQAAKSYEKVCALYSGEG--WQD--LLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 470 (1066)
Q Consensus 406 LA~l~y~~gdY~kA~~~l~~~~~~Y~~eg--W~~--L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~ 470 (1066)
.|.-++++|||-||+.+..++.....++. |-. +.|.|...++.=...-.-...|+..+++-.+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a 70 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRA 70 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHH
Confidence 57889999999999999999999999888 621 225566555543332333337777777666554
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=52.78 E-value=47 Score=30.84 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=46.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 468 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs 468 (1066)
-.+.|..++..|+|++|..+|..+...+...... ...+..++.|+.+.++.++-+..+-+++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA---PNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc---HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4678999999999999999999999877654322 34556677788887776655555554544
No 56
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.49 E-value=25 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 001500 405 EIAAVCFKHGNYDQAAKSYE 424 (1066)
Q Consensus 405 dLA~l~y~~gdY~kA~~~l~ 424 (1066)
-+|..+|++|+|++|..+|+
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 46889999999999999966
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=51.68 E-value=1.2e+02 Score=31.02 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=18.4
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYEKVCALY 430 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y 430 (1066)
+...+|..|++.|+|++|..+|..++...
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666666666666666666666666644
No 58
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.08 E-value=56 Score=30.31 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=47.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhhCCchh---HHHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Q 001500 409 VCFKHGNYDQAAKSYEKVCALYSGEGWQD---LLAEVLPNLAECQKILNDEAGYLLSCVRLLS 468 (1066)
Q Consensus 409 l~y~~gdY~kA~~~l~~~~~~Y~~egW~~---L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs 468 (1066)
...+.|||..|...++...++...++|.. -....+...+..+..+|..++-+...-+.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999876 3444566677788888888877776665554
No 59
>COG1470 Predicted membrane protein [Function unknown]
Probab=48.42 E-value=5.8e+02 Score=30.99 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=68.1
Q ss_pred CCCCeEEEEEEEeCCCCceEeeEEEEEEEecccCCCCceEEE-----ecCceEeeCCccE-EE--EEcC-CCcceeEEEE
Q 001500 520 DGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALN-----TSTATVLKPGRNT-IT--VDLP-PQKPGSYVLG 590 (1066)
Q Consensus 520 ~~D~~~l~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~~l~-----s~~~v~L~PG~Nk-i~--L~~~-~~~~G~y~l~ 590 (1066)
..+...+.|.|.|+--.+ ++.+|.+.+. .++-...| .-..+.|+||..+ ++ ++.+ +..+|.|.+.
T Consensus 282 ~~~t~sf~V~IeN~g~~~---d~y~Le~~g~---pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~ 355 (513)
T COG1470 282 PSTTASFTVSIENRGKQD---DEYALELSGL---PEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVT 355 (513)
T ss_pred cCCceEEEEEEccCCCCC---ceeEEEeccC---CCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCceeEE
Confidence 355567778887774332 6666666641 23222222 2235678999866 44 4433 4568999754
Q ss_pred EEEEEEcc-eeeeeeccccCCCCCCccccccCCCCCCeEEEEcCCCeeEEEeccCCCcccCccEEEEEEEEcCcccc-cc
Q 001500 591 ALTGHIGR-LRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KG 668 (1066)
Q Consensus 591 ~l~i~ig~-l~F~s~~f~~~~~~~~~~~~s~~~~~~p~~~v~~~~p~v~l~~~~~~plL~g~~q~V~l~V~sG~~~i-~~ 668 (1066)
-....-.. ..+....-.-.|. -...+.-..+...+ .+-+|+.+.+.+.|.|-.+.- +|
T Consensus 356 I~A~s~s~v~~e~~lki~~~g~--------------~~~~v~l~~g~~~l------t~taGee~~i~i~I~NsGna~Ltd 415 (513)
T COG1470 356 ITASSSSGVTRELPLKIKNTGS--------------YNELVKLDNGPYRL------TITAGEEKTIRISIENSGNAPLTD 415 (513)
T ss_pred EEEeccccceeeeeEEEEeccc--------------cceeEEccCCcEEE------EecCCccceEEEEEEecCCCccce
Confidence 33222111 1111000000000 01111111111222 234688888888887755554 88
Q ss_pred eEEEEecCCCcccc
Q 001500 669 AILQIDTGPGLTIE 682 (1066)
Q Consensus 669 ~~L~l~~s~gl~i~ 682 (1066)
.+|++....|..++
T Consensus 416 Ikl~v~~PqgWei~ 429 (513)
T COG1470 416 IKLTVNGPQGWEIE 429 (513)
T ss_pred eeEEecCCccceEE
Confidence 88888666664443
No 60
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=46.35 E-value=2.3e+02 Score=31.83 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcC-CcchhHHHhHHHHHHHHh-cCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHH
Q 001500 383 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFK-HGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 460 (1066)
Q Consensus 383 t~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~-~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv 460 (1066)
.+.|=.-|++|. +.+..-.+-+..|.+-|+ .+|.+.|.++|...++.|..+ ..+...|++.+.++++. +-+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~~~~~Y~~~l~~~~d~-~~a 89 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PDFWLEYLDFLIKLNDI-NNA 89 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-H-HHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhCcH-HHH
Confidence 344445555552 333445677888999666 788888999999999999987 56777888888888754 445
Q ss_pred HHHHHHhccccCCCCHHH-HHHHHHHHHHH
Q 001500 461 LSCVRLLSLDKGLFSTKE-RQAFQSEVISL 489 (1066)
Q Consensus 461 ~~~l~LLs~~~~~~~~~e-r~~~~~ell~~ 489 (1066)
+..++-.- ..+..+. ...+|+.+++.
T Consensus 90 R~lfer~i---~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 90 RALFERAI---SSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHC---CTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHHH---HhcCchhHHHHHHHHHHHH
Confidence 55543221 1233333 34677776653
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=45.83 E-value=90 Score=32.09 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVCA 428 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~~ 428 (1066)
..+|..|+.+|+|++|..+|..+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3444455555555555555555443
No 62
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=45.14 E-value=40 Score=37.26 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=42.7
Q ss_pred chhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhC
Q 001500 397 RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN 454 (1066)
Q Consensus 397 Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~ 454 (1066)
..+......+|..||+.|||++|...|+..+..|-++.=. -.++-+.+.|+..++
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---DYVLYMRGLTNMALD 120 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---HHHHHHHHHhhhhcc
Confidence 4555667899999999999999999999999999988533 445555556655543
No 63
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=44.15 E-value=2e+02 Score=34.69 Aligned_cols=116 Identities=22% Similarity=0.132 Sum_probs=79.6
Q ss_pred hhhHHHhhcCHHHHHHHHHHH--HHHHHHHHHhc---CCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCch
Q 001500 362 NPNLLKSLSSVEEFEQKYLEL--TKGAANNYHCS---WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQ 436 (1066)
Q Consensus 362 ~~~LkeAL~S~e~F~~~Yl~L--t~~Ai~~yk~~---~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~ 436 (1066)
.+.+..||. +.|+.| .+.||.-|+.+ |-.-. ..-..||.+|=+.+|+++|+.+|......+..+|=-
T Consensus 431 DsRlw~aLG------~CY~kl~~~~eAiKCykrai~~~dte~--~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~ 502 (559)
T KOG1155|consen 431 DSRLWVALG------ECYEKLNRLEEAIKCYKRAILLGDTEG--SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI 502 (559)
T ss_pred chHHHHHHH------HHHHHhccHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 456676664 456554 67899999985 44432 345899999999999999999999999988777755
Q ss_pred hHH-HHHHHHHHHHHHHhCCcchHHHHHHHHhccccCCCCHHHHHHHHHHHHH
Q 001500 437 DLL-AEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVIS 488 (1066)
Q Consensus 437 ~L~-~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~~~~~~~~er~~~~~ell~ 488 (1066)
.-. ...+.-+++-.+++++.++--..|...++ +...-++...++.++-+
T Consensus 503 ~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~---~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 503 DDETIKARLFLAEYFKKMKDFDEASYYATLVLK---GETECEEAKALLREIRK 552 (559)
T ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc---CCchHHHHHHHHHHHHH
Confidence 442 23444477777788887766666665554 22333455567777654
No 64
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=43.68 E-value=93 Score=31.96 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=41.9
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHH
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 462 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~ 462 (1066)
....+|..|+..|+|++|..+|..++.......|. ...+..++.|+.++++.++-+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~ 94 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDR---SYILYNMGIIYASNGEHDKALEY 94 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 45788999999999999999999998765544332 34566667777777776644433
No 65
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=43.67 E-value=37 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHH
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYE 424 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~ 424 (1066)
....+|..|+.+||+++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35679999999999999998875
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=43.67 E-value=92 Score=32.02 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcch
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 458 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~d 458 (1066)
.....+|..|++.|+|++|..+|..++.....+. ..+..++.|+...++.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------DVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcccHHH
Confidence 3456789999999999999999999998765543 233444555555554443
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=42.22 E-value=74 Score=30.70 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=38.7
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHH
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 460 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv 460 (1066)
.....+|..++..|+|++|...|..+......+ ..+...++.|+.++++.++-+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999988865433 344455566666665554433
No 68
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.65 E-value=1e+02 Score=33.54 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Q 001500 400 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 434 (1066)
Q Consensus 400 ~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~eg 434 (1066)
..++.=+|+++++.|+|++|..+|..+......+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 46788999999999999999999999999888776
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=40.96 E-value=1.5e+02 Score=36.58 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhc-CCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHH--hC
Q 001500 382 LTKGAANNYHCS-WWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG---EGWQDLLAEVLPNLAECQKI--LN 454 (1066)
Q Consensus 382 Lt~~Ai~~yk~~-~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~---egW~~L~~~~L~~~a~C~k~--L~ 454 (1066)
+-+.|+..+..+ |.+- +......+||.+|+.+|+|.+|..++..+++-|.. ..=..+...+....+-|.-+ ..
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 444555555554 4333 44456999999999999999999999999998887 33333445555555555432 33
Q ss_pred CcchHHHHHHHHhcc
Q 001500 455 DEAGYLLSCVRLLSL 469 (1066)
Q Consensus 455 ~~~dYv~~~l~LLs~ 469 (1066)
....|++-.++++..
T Consensus 343 ea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLD 357 (508)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344777777776653
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=40.40 E-value=83 Score=33.73 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcC----CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Q 001500 383 TKGAANNYHCSW----WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI 452 (1066)
Q Consensus 383 t~~Ai~~yk~~~----R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~ 452 (1066)
.+.|+..|...- ...........+|..|+..|+|++|...|..++..+-.+ +..- ..+-....|+.+
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~--~a~~~~g~~~~~ 119 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH-PDAD--YAYYLRGLSNYN 119 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-CchH--HHHHHHHHHHHH
Confidence 345566665431 122334566888889999999999999999888877643 3221 234455555544
No 71
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=40.28 E-value=45 Score=37.04 Aligned_cols=73 Identities=18% Similarity=0.085 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHH
Q 001500 384 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 463 (1066)
Q Consensus 384 ~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~ 463 (1066)
..++..|........ .+...+|..|+..|+|++|+.+|..++.....+ ..++..|++++...|+.++=+.+-
T Consensus 200 ~~~l~~~~~~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d------~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 200 REALKRLLKAAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDD------PLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHHHH-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHCcCHH--HHHHHHHHHhccccccccccccccccccccccc------cccccccccccccccccccccccc
Confidence 334444544432222 356788999999999999999999988755554 567778999999888888655544
Q ss_pred H
Q 001500 464 V 464 (1066)
Q Consensus 464 l 464 (1066)
-
T Consensus 272 ~ 272 (280)
T PF13429_consen 272 R 272 (280)
T ss_dssp -
T ss_pred c
Confidence 3
No 72
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.45 E-value=43 Score=27.02 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVCA 428 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~~ 428 (1066)
.+||.-|+..||++.|-.++..++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6899999999999999999999985
No 73
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.86 E-value=1.3e+02 Score=33.31 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhccccC
Q 001500 411 FKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKG 472 (1066)
Q Consensus 411 y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~~~ 472 (1066)
--.+.|+.|..+|.+....|+-..=|...|.....+++|+.+.++.+|--.+.++..-+++.
T Consensus 25 gg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk 86 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK 86 (288)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Confidence 34457999999999999999977766678888889999999999988877777766555543
No 74
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.63 E-value=57 Score=38.43 Aligned_cols=67 Identities=30% Similarity=0.412 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC---------chhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhccc
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEG---------WQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 470 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~eg---------W~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~ 470 (1066)
.+-|..||++|+|..|..-|..+..+...+. -..+-...+..++-|+-||++...-+..|.+.|...
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4567889999999999999999888776333 223335667778889999999999999999888755
No 75
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=38.08 E-value=89 Score=35.84 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=29.6
Q ss_pred eCCCCCeEEEEEEEEEcccCCCCCCccccCCccC
Q 001500 1005 PTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEE 1038 (1066)
Q Consensus 1005 ~~~~~~~~~v~~~~~PL~aGyl~lP~l~L~~~~~ 1038 (1066)
+..+|+.|.+.+.+|||.+|++.|+.|+|.....
T Consensus 259 pL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t 292 (306)
T PF12735_consen 259 PLAPGACYSVELRFIALSPGVHNLEGLKVVDLNT 292 (306)
T ss_pred ccCCCceEEEEEEEEEeccceEeecceEEEECCC
Confidence 3367999999999999999999999999866553
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=37.89 E-value=53 Score=29.32 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHH
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEK 425 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~ 425 (1066)
....-+|.-+++.|+|++|+..|..
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4455679999999999999999875
No 77
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=37.33 E-value=67 Score=41.27 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCc-chhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHH----HhhCCchhHHHHHHHHHHHHHHHhCCc
Q 001500 382 LTKGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL----YSGEGWQDLLAEVLPNLAECQKILNDE 456 (1066)
Q Consensus 382 Lt~~Ai~~yk~~~R~-Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~----Y~~egW~~L~~~~L~~~a~C~k~L~~~ 456 (1066)
-.+.|+..|.++=-. -...-+.+-||.+|.++|+.++|+..+..+... -..++|+. +.-|+-..+.-+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~-e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP-ERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH-HHHHHHHHHHHHHHhhhH
Confidence 456777777775111 122223578999999999999999999987622 23556774 455665555556679999
Q ss_pred chHHHHHHHHhcc
Q 001500 457 AGYLLSCVRLLSL 469 (1066)
Q Consensus 457 ~dYv~~~l~LLs~ 469 (1066)
++|+.+...|+..
T Consensus 543 E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 543 EEFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988874
No 78
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.26 E-value=64 Score=35.70 Aligned_cols=112 Identities=16% Similarity=0.171 Sum_probs=85.2
Q ss_pred ccCChhhHHHhhcCHHHHHHHHHHHHHHHHHHHHhcC-------CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHH-
Q 001500 358 QTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSW-------WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL- 429 (1066)
Q Consensus 358 ~~is~~~LkeAL~S~e~F~~~Yl~Lt~~Ai~~yk~~~-------R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~- 429 (1066)
.|+.+..|-+..++.+-..-.++-|.-.+=++|.+-. .+++.- +.-+=|+-.|..|+|.+|.+-|.++.--
T Consensus 130 ~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~-~l~q~GN~lfk~~~ykEA~~~YreAi~~l 208 (329)
T KOG0545|consen 130 HGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVP-VLHQEGNRLFKLGRYKEASSKYREAIICL 208 (329)
T ss_pred cCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchHhhhhhH-HHHHhhhhhhhhccHHHHHHHHHHHHHHH
Confidence 3567899999999988888888878878888888854 333333 3456688889999999999988876532
Q ss_pred --------HhhCCchhHH---HHHHHHHHHHHHHhCCcchHHHHHHHHhccc
Q 001500 430 --------YSGEGWQDLL---AEVLPNLAECQKILNDEAGYLLSCVRLLSLD 470 (1066)
Q Consensus 430 --------Y~~egW~~L~---~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~ 470 (1066)
-.+.-|-.|. +-+|..|+.|+-+.++--+-+..|.++|..+
T Consensus 209 ~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 209 RNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 2345588777 5688899999877777778888999998755
No 79
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=36.79 E-value=2.8e+02 Score=25.35 Aligned_cols=62 Identities=19% Similarity=0.357 Sum_probs=30.1
Q ss_pred EEEEEEEeCCCCceEeeE-----EEEEEEecccCCCCceEEE---------ecCceEeeCCccEE-EEEcCCCc--ceeE
Q 001500 525 TLSVTVWSGFPDDITVDT-----LSLTLMATYNADEGAKALN---------TSTATVLKPGRNTI-TVDLPPQK--PGSY 587 (1066)
Q Consensus 525 ~l~V~l~s~lP~~I~~d~-----v~l~L~~~~~~~~~~~~l~---------s~~~v~L~PG~Nki-~L~~~~~~--~G~y 587 (1066)
.+.+.|+|.-..++++.- ..+.+.+ .+|+.+.+ .....+|.||+... ....+... +|.|
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d----~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y 78 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKD----KEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEY 78 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-----TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEE
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEEC----CCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceE
Confidence 456667777655554441 3333333 34433221 33467899999764 66666666 8999
Q ss_pred EEE
Q 001500 588 VLG 590 (1066)
Q Consensus 588 ~l~ 590 (1066)
.+.
T Consensus 79 ~~~ 81 (82)
T PF12690_consen 79 TLE 81 (82)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 80
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=36.72 E-value=46 Score=23.66 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 001500 39 QESLAFMFEMAHLHEDALREYDELELCY 66 (1066)
Q Consensus 39 kE~LA~lfe~~~L~eDAL~qYdELea~f 66 (1066)
.-.+|.+|..+|-+++|...|+++-..+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3468999999999999999999887654
No 81
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.72 E-value=1.7e+02 Score=29.07 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=40.6
Q ss_pred HHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHH
Q 001500 400 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 461 (1066)
Q Consensus 400 ~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~ 461 (1066)
......||.+++..|+|++|+..|..+ ..+.|... ......+++...|+.++=..
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~----~~~~~~~~---~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI----PDEAFKAL---AAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc----cCcchHHH---HHHHHHHHHHHCCCHHHHHH
Confidence 356788999999999999999999663 35667644 55567777777777665433
No 82
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=35.84 E-value=46 Score=27.91 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCAL 429 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~ 429 (1066)
..-+|.=||+.|||.+|..+...++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456899999999999999999988874
No 83
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=34.27 E-value=2.1e+02 Score=28.24 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcc
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEA 457 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~ 457 (1066)
..+|..+...|+|++|+.++..++..+--+ -.+-..+.+|+..+|+..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~~ 113 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRRA 113 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCHH
Confidence 445555566666777777766666643332 333444555666666554
No 84
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.70 E-value=1.4e+02 Score=27.72 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHH
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 463 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~ 463 (1066)
-...++|..++..|+|+.|+..|..++.. .-+|.- ....+.++++...|+..+.-+...
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~--dr~~~~--~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRR--DRDYED--DAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC---TTCCC--CHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccccc--cHHHHHHHHHHHHcCCCChHHHHH
Confidence 34689999999999999999999998885 345642 667778888888888876554443
No 85
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=33.15 E-value=49 Score=31.93 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=24.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCAL 429 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~ 429 (1066)
-.+|+.||+.+|.+.+|+.++......
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 368999999999999999999999884
No 86
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.99 E-value=3e+02 Score=30.78 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchH
Q 001500 380 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 459 (1066)
Q Consensus 380 l~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dY 459 (1066)
..+.++|+..|..||+--.|.. ..+=|.=-..-.++++|+.+|++.+.-+.+++-...+...+ -.|.+-|-+...|
T Consensus 91 vdl~eKAs~lY~E~GspdtAAm-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~---gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAM-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY---GKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---HHhhhHhhhhHHh
Confidence 4577899999999998876653 44555556788899999999999999999998887665544 4455555555555
Q ss_pred HHHHHHHh
Q 001500 460 LLSCVRLL 467 (1066)
Q Consensus 460 v~~~l~LL 467 (1066)
...++.++
T Consensus 167 ~Eaa~a~l 174 (308)
T KOG1585|consen 167 TEAATAFL 174 (308)
T ss_pred hHHHHHHH
Confidence 55555443
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=32.96 E-value=1.3e+02 Score=30.59 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCc--chh--HHHhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001500 384 KGAANNYHCSWWK--RHG--VVLDGEIAAVCFKHGNYDQAAKSYEKVCAL 429 (1066)
Q Consensus 384 ~~Ai~~yk~~~R~--Rsa--~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~ 429 (1066)
+.|+..|.++-.. .+. ......||.+|.++|++++|..+|..++..
T Consensus 52 ~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 52 AEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666665211 111 124566777777777777777777777765
No 88
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.78 E-value=72 Score=28.85 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhhCC
Q 001500 410 CFKHGNYDQAAKSYEKVCALYSGEG 434 (1066)
Q Consensus 410 ~y~~gdY~kA~~~l~~~~~~Y~~eg 434 (1066)
-=..|+|++|..+|.+.+++|..+.
T Consensus 16 eD~~gny~eA~~lY~~ale~~~~ek 40 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVELCINTS 40 (75)
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999998865
No 89
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=32.52 E-value=1.9e+02 Score=33.45 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHh
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 467 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LL 467 (1066)
..+|..+++.|++++|..+|..+....... ......+++++.+.++.++-+...-+++
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456666667777777777777766654321 1233445566666666655554444444
No 90
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=31.74 E-value=1.2e+02 Score=36.61 Aligned_cols=49 Identities=10% Similarity=-0.073 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcC----CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001500 381 ELTKGAANNYHCSW----WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL 429 (1066)
Q Consensus 381 ~Lt~~Ai~~yk~~~----R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~ 429 (1066)
.-.+.|+..|.++= ..-.+......+|..|.++|++++|+..|..+++.
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567777777752 22223456888888888888888888888888886
No 91
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.47 E-value=1.9e+02 Score=32.35 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=54.7
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCC--cchHHHHHHHHhccccCCCCHHHHHHHHHHHHHH
Q 001500 412 KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND--EAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISL 489 (1066)
Q Consensus 412 ~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~--~~dYv~~~l~LLs~~~~~~~~~er~~~~~ell~~ 489 (1066)
.+++|+.|..++.+-+..+.+.|=..-++++-..+++++.+-+. .++.+.-..++++... .++.+|..+.++.++-
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~--~~~p~r~~fi~~ai~W 79 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFP--PEEPERKKFIKAAIKW 79 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS---TT-TTHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHH
Confidence 57899999999999998888888788899999999999987443 3455555555665331 2233477888888877
Q ss_pred H
Q 001500 490 A 490 (1066)
Q Consensus 490 ~ 490 (1066)
+
T Consensus 80 S 80 (260)
T PF04190_consen 80 S 80 (260)
T ss_dssp H
T ss_pred H
Confidence 6
No 92
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=30.92 E-value=1.3e+02 Score=38.86 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=43.6
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHH
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 462 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~ 462 (1066)
|-.|+|..+.+.|+|..|+.||..++.. ++|.. +.+-...++|++.++..+.-+..
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~---~~~~~--~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNR---EGYQN--AFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcC---ccccc--hhhhHHHHHHHHHHhhHHHHHHH
Confidence 4579999999999999999999999885 44544 55556778999998887744443
No 93
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=30.83 E-value=1.6e+02 Score=37.00 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHH
Q 001500 383 TKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 461 (1066)
Q Consensus 383 t~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~ 461 (1066)
.+.|+..|.++-... .-......+|..+++.|+|++|+.+|..++..+.... .++..+..++..+++.++=+.
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~------~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP------DVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHH
Confidence 445666666653221 2223466888889999999999999988887665442 233344555555555543333
No 94
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.82 E-value=5.2e+02 Score=30.16 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHH-----HHhhCCchhHHHHHHHHHHHHHHHhC
Q 001500 380 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCA-----LYSGEGWQDLLAEVLPNLAECQKILN 454 (1066)
Q Consensus 380 l~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~-----~Y~~egW~~L~~~~L~~~a~C~k~L~ 454 (1066)
++..+++++..+.+.-.-.+..+..++|.+|...||-.+|-+.+.+.-. .+...+=+..-..+=.. -++..+
T Consensus 95 l~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq---Yyk~~~ 171 (380)
T KOG2908|consen 95 LEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ---YYKKIG 171 (380)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH---HHHHHH
Confidence 4566777788888875556667899999999999999999999988766 33333322222222223 345578
Q ss_pred CcchHHHHHHHHhccc-cCCCCHHHHHH
Q 001500 455 DEAGYLLSCVRLLSLD-KGLFSTKERQA 481 (1066)
Q Consensus 455 ~~~dYv~~~l~LLs~~-~~~~~~~er~~ 481 (1066)
+-.+|.+.|+.-|++. ...++..+++.
T Consensus 172 d~a~yYr~~L~YL~~~d~~~l~~se~~~ 199 (380)
T KOG2908|consen 172 DFASYYRHALLYLGCSDIDDLSESEKQD 199 (380)
T ss_pred hHHHHHHHHHHHhccccccccCHHHHHH
Confidence 8889999999888864 22345555543
No 95
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=30.80 E-value=2e+02 Score=33.15 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVC 427 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~ 427 (1066)
..+|.+|+++|+|++|..++..+.
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l 96 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLL 96 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHh
Confidence 334445555555555555444444
No 96
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=29.38 E-value=2.1e+02 Score=29.08 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=35.0
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcch
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 458 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~d 458 (1066)
....+|..+..+|+|++|...|..++....... -...++..++.|+.++++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY---DRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHHcCCHHH
Confidence 356678888889999999999998877643221 113345555556665555553
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=29.32 E-value=4.6e+02 Score=32.39 Aligned_cols=96 Identities=15% Similarity=0.200 Sum_probs=63.3
Q ss_pred HHHHHHHHhcC---CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHH
Q 001500 384 KGAANNYHCSW---WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 460 (1066)
Q Consensus 384 ~~Ai~~yk~~~---R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv 460 (1066)
+.|-.-|++|+ |.++...+..-+ .+||..||++-|.++|.-=+..|.++ ......|++-+-+|+++..-=
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~-mEy~cskD~~~AfrIFeLGLkkf~d~------p~yv~~YldfL~~lNdd~N~R 455 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAAL-MEYYCSKDKETAFRIFELGLKKFGDS------PEYVLKYLDFLSHLNDDNNAR 455 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHH-HHHHhcCChhHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhCcchhHH
Confidence 34555677774 777544433333 35778899999999999999999988 455566777777788766432
Q ss_pred HHHHHHhccccCCCCHHHHHHHHHHHHHH
Q 001500 461 LSCVRLLSLDKGLFSTKERQAFQSEVISL 489 (1066)
Q Consensus 461 ~~~l~LLs~~~~~~~~~er~~~~~ell~~ 489 (1066)
...=+++.. .++.++-..+|+.+++.
T Consensus 456 ~LFEr~l~s---~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 456 ALFERVLTS---VLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHhc---cCChhhhHHHHHHHHHH
Confidence 222234432 35555556889988864
No 98
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=28.85 E-value=62 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Q 001500 40 ESLAFMFEMAHLHEDALREYDELE 63 (1066)
Q Consensus 40 E~LA~lfe~~~L~eDAL~qYdELe 63 (1066)
-+||.+|..+|-|++|...|.+.-
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 369999999999999999998844
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=28.78 E-value=1.4e+02 Score=34.99 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhC
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN 454 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~ 454 (1066)
.....+|..|+++|+|+.|...|..++...-.+ ..+...+.+|..+|.
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~------~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLAPGD------SRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHH
Confidence 346788999999999999999999999865443 234445567766663
No 100
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.97 E-value=58 Score=40.27 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHhhcCHHHHHHHHHHHH---------HHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCc
Q 001500 366 LKSLSSVEEFEQKYLELT---------KGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW 435 (1066)
Q Consensus 366 keAL~S~e~F~~~Yl~Lt---------~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW 435 (1066)
.+|++=.-+|-+.|++|- ++|+..|-++--.| ....+.+.||..||.+|+.+-|..-|.++++.=-.=
T Consensus 242 ~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-- 319 (966)
T KOG4626|consen 242 EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-- 319 (966)
T ss_pred HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc--
Q ss_pred hhHHHHHHHHHHHHHHHhCCcc---hHHHHHHHH
Q 001500 436 QDLLAEVLPNLAECQKILNDEA---GYLLSCVRL 466 (1066)
Q Consensus 436 ~~L~~~~L~~~a~C~k~L~~~~---dYv~~~l~L 466 (1066)
-..--.++..++..|++. +|...++++
T Consensus 320 ----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 320 ----PDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred ----hHHHhHHHHHHHhccchHHHHHHHHHHHHh
No 101
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=26.75 E-value=1.2e+02 Score=38.08 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=14.2
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCAL 429 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~ 429 (1066)
.....+|..|+.+|+|++|+..+..++..
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l 189 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALEL 189 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 33444555555555555555555554443
No 102
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=26.68 E-value=1.8e+02 Score=36.99 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001500 384 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL 429 (1066)
Q Consensus 384 ~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~ 429 (1066)
+.|+..|.++- ....-......+|..+...|+ .+|+.++..++..
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 45555555531 111111234445555555555 5555555555543
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.51 E-value=1.7e+02 Score=36.17 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=49.5
Q ss_pred HHHHHHH----HHHHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Q 001500 375 FEQKYLE----LTKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAEC 449 (1066)
Q Consensus 375 F~~~Yl~----Lt~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C 449 (1066)
|++.|.. ..+.|+..++.+.|-- .+..|- |-..|+.|+|++|+.+|+++++.-..+-=..+...++...+.-
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~---AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELR---AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcccccchHHHHHH---HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 6888876 5788888888776554 344444 5567999999999999999987555444444555555544433
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=25.49 E-value=2.3e+02 Score=32.31 Aligned_cols=62 Identities=15% Similarity=-0.048 Sum_probs=39.7
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHH
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCV 464 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l 464 (1066)
.+..-+|..|+++|++++|..++...+..+... ..+..+....++.|+...|+.++-+...-
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 456778999999999999999999888765431 11222333445566666666665444443
No 105
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=24.84 E-value=2.8e+02 Score=27.30 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHH--------------HhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Q 001500 372 VEEFEQKYLELTKGAANNYHCSWWKRHGVV--------------LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 433 (1066)
Q Consensus 372 ~e~F~~~Yl~Lt~~Ai~~yk~~~R~Rsa~~--------------L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~e 433 (1066)
++.+...|++.....+..+...|+...|.. +...+-..|+..|++..|...|..+...+.++
T Consensus 54 r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 54 RERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 667888888888888888888876554432 33445566677777777777777766665544
No 106
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.75 E-value=97 Score=37.45 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Q 001500 405 EIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 468 (1066)
Q Consensus 405 dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs 468 (1066)
..|.=+|+.|+|+.|..||+.+....-.| ...-...+-|+..+++++.-++-|.+.|.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~e------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDE------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
Confidence 44566799999999999999999887776 23334445566666666655555554443
No 107
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.59 E-value=1.6e+02 Score=33.18 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=45.8
Q ss_pred HHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHH
Q 001500 401 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 461 (1066)
Q Consensus 401 ~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~ 461 (1066)
.+---+|..|.++|+|++|..++..++..+... -.+|....-|..++|.+.+-+.
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d------petL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD------PETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCChHHHH
Confidence 344557999999999999999999999987776 7788899999999998854443
No 108
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=23.68 E-value=2.4e+02 Score=35.83 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=27.9
Q ss_pred HhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHH
Q 001500 402 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 463 (1066)
Q Consensus 402 L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~ 463 (1066)
+...+|..++++|+|++|..+|..++...-.. ..+...++.++.++++.++-+...
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34555666666666666666666666543332 122333444444444444443333
No 109
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.73 E-value=99 Score=24.98 Aligned_cols=26 Identities=19% Similarity=-0.020 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH
Q 001500 39 QESLAFMFEMAHLHEDALREYDELEL 64 (1066)
Q Consensus 39 kE~LA~lfe~~~L~eDAL~qYdELea 64 (1066)
|-.||..|-.||-+|.|....+|+-.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67899999999999999998888764
No 110
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.65 E-value=3e+02 Score=34.50 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=58.6
Q ss_pred hHHHhhcC-HHHHHHHHHHHHHHHHHHHHhcC-CcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHH----------HHHh
Q 001500 364 NLLKSLSS-VEEFEQKYLELTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVC----------ALYS 431 (1066)
Q Consensus 364 ~LkeAL~S-~e~F~~~Yl~Lt~~Ai~~yk~~~-R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~----------~~Y~ 431 (1066)
.|.+.++- .+..+..+..-+..|+..|.+.. .+.-.-++-.++|..||..+||++|..+|..+- +.|.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS 394 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS 394 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH
Confidence 44444332 34555556667888999998843 112122788999999999999999999999875 4455
Q ss_pred hCCchhHHHHHHHHHHHH
Q 001500 432 GEGWQDLLAEVLPNLAEC 449 (1066)
Q Consensus 432 ~egW~~L~~~~L~~~a~C 449 (1066)
.-=|++=...-|.++++=
T Consensus 395 T~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 395 TTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 555776666666666443
No 111
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.27 E-value=4.3e+02 Score=31.77 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Q 001500 382 LTKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 433 (1066)
Q Consensus 382 Lt~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~e 433 (1066)
..+++|..|.++.-+. ....--.-+|.-.-+.|+|++|..+|.++.+-|-++
T Consensus 641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 5677777777764222 111112235666667888888888888877776655
No 112
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.04 E-value=2e+02 Score=26.08 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVCALYSGE 433 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~e 433 (1066)
+..|...=+.|+|++|+.+|.+.++.+..-
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 455667778999999999999999887653
No 113
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=21.74 E-value=3.8e+02 Score=32.67 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCC----cc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCc
Q 001500 382 LTKGAANNYHCSWW----KR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 456 (1066)
Q Consensus 382 Lt~~Ai~~yk~~~R----~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~ 456 (1066)
-.+.|++.|..|.. .| ....+-.|+|-.|..+.||++|+.+|..+.. .++|..-.. -=+.+-|+-.+++.
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~---~s~WSka~Y--~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK---ESKWSKAFY--AYLAAACLLMLGRE 356 (468)
T ss_pred CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh---ccccHHHHH--HHHHHHHHHhhccc
Confidence 45778888886542 22 4446699999999999999999999988887 889963221 12233456566665
No 114
>PRK11189 lipoprotein NlpI; Provisional
Probab=21.58 E-value=3.5e+02 Score=30.50 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=14.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCAL 429 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~ 429 (1066)
...+|..|.+.|+|++|...|..+++.
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555543
No 115
>PRK12370 invasion protein regulator; Provisional
Probab=21.44 E-value=4.8e+02 Score=32.38 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 001500 384 KGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 432 (1066)
Q Consensus 384 ~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~ 432 (1066)
+.|+..+.++=... .-......+|.++...|+|++|...|..++...-.
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 370 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI 370 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 45556565542211 11123456788899999999999999998876543
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=21.27 E-value=2.1e+02 Score=28.63 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhh-CCchhHHHHHHH
Q 001500 383 TKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG-EGWQDLLAEVLP 444 (1066)
Q Consensus 383 t~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~-egW~~L~~~~L~ 444 (1066)
.+.|+..|.++-+.. .--.....+|..+...|++++|...|..++..--. ..|+.+.+.++.
T Consensus 74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345777777764333 22245788999999999999999999998875433 345555554443
No 117
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=21.20 E-value=1.4e+03 Score=28.10 Aligned_cols=141 Identities=17% Similarity=0.223 Sum_probs=77.9
Q ss_pred CCeEEEEEEEeCCCCceEeeEEEEEEEecccCCCCce-EEEe------cCceEeeCCccEE---E--EEc---CCCcce-
Q 001500 522 DPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAK-ALNT------STATVLKPGRNTI---T--VDL---PPQKPG- 585 (1066)
Q Consensus 522 D~~~l~V~l~s~lP~~I~~d~v~l~L~~~~~~~~~~~-~l~s------~~~v~L~PG~Nki---~--L~~---~~~~~G- 585 (1066)
....+...+.+.-|.++.+.++++.+.+.. .+.. .+.. .....+.|+...- . +.+ .....+
T Consensus 356 ~~~~l~~~i~s~a~~~L~I~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 432 (554)
T PF07919_consen 356 QPWCLNSDIESFAPEPLEIEDISLEVLSSN---GGASCDVSSEDSSSPESGTVLQPGECREDQFCLRLDVQKLSLDDRRN 432 (554)
T ss_pred CCeEEEccceecCCCceEEEEEEEEEecCC---CceeeeeccccccCCCccceeCccccccccccccccccccccccCcc
Confidence 445678889999999999999999998731 1111 1111 1234455654321 1 111 111111
Q ss_pred eEEEEEEEEEEcceeeeeeccccCCCCCCccccccCCCCCCeEEEEcCCCeeEEEeccCCCcccCccEEEEEEEEcCccc
Q 001500 586 SYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYS 665 (1066)
Q Consensus 586 ~y~l~~l~i~ig~l~F~s~~f~~~~~~~~~~~~s~~~~~~p~~~v~~~~p~v~l~~~~~~plL~g~~q~V~l~V~sG~~~ 665 (1066)
.-...++.|++-+.. .+. .+......-+.|.+.|...++.+.+++ +....+|.+..+.++|.|....
T Consensus 433 ~~~~g~~~I~WrR~~--------~~s---~~~~~~t~l~lP~~~v~~~~~~v~~~~--p~~~~~~~~~~l~~~I~N~T~~ 499 (554)
T PF07919_consen 433 VTLLGSLVIKWRRNS--------SNS---SDPVVTTPLPLPRVNVPSSPLRVLASV--PPSAIVGEPFTLSYTIENPTNH 499 (554)
T ss_pred ceeEEEEEEEEEECC--------CCC---CCceEEEEeecCceEccCCCcEEEEec--CCccccCcEEEEEEEEECCCCc
Confidence 233334444444300 000 000101112237777777777665555 7888899999999999998877
Q ss_pred ccceEEEEecCCC
Q 001500 666 LKGAILQIDTGPG 678 (1066)
Q Consensus 666 i~~~~L~l~~s~g 678 (1066)
+-...+++..+++
T Consensus 500 ~~~~~~~me~s~~ 512 (554)
T PF07919_consen 500 FQTFELSMEPSDD 512 (554)
T ss_pred cEEEEEEEccCCC
Confidence 7666666644444
No 118
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=21.13 E-value=1.3e+02 Score=23.47 Aligned_cols=27 Identities=15% Similarity=-0.036 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHH
Q 001500 39 QESLAFMFEMAHLHEDALREYDELELC 65 (1066)
Q Consensus 39 kE~LA~lfe~~~L~eDAL~qYdELea~ 65 (1066)
...||..|..+|-+++|...|+..-+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457999999999999999988776554
No 119
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=21.11 E-value=2.6e+02 Score=35.49 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=39.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Q 001500 403 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 468 (1066)
Q Consensus 403 ~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs 468 (1066)
...+|..|++.|+|++|..+|..++...... ..+..++.|+.++|+.++-+...-+++.
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSS-------QNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4557888888888888888888887765443 3344566677777766655555444443
No 120
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=20.88 E-value=3.2e+02 Score=32.55 Aligned_cols=72 Identities=25% Similarity=0.226 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcc
Q 001500 378 KYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEA 457 (1066)
Q Consensus 378 ~Yl~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~ 457 (1066)
-...+.++++.... +.+. +...-|.++..+|+|+.|+.+.+.+....-.+ ...-..+++|+-++++.+
T Consensus 218 ~AI~ll~~aL~~~p-----~d~~-LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 218 EAIRLLNEALKENP-----QDSE-LLNLQAEFLLSKKKYELALEIAKKAVELSPSE------FETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHHHHHHhCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhcCCHH
Confidence 34566666663222 1244 44577888999999999999999998876665 333445778888888877
Q ss_pred hHHH
Q 001500 458 GYLL 461 (1066)
Q Consensus 458 dYv~ 461 (1066)
+-+-
T Consensus 286 ~ALl 289 (395)
T PF09295_consen 286 NALL 289 (395)
T ss_pred HHHH
Confidence 7664
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=20.44 E-value=4.4e+02 Score=27.96 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001500 404 GEIAAVCFKHGNYDQAAKSYEKVCALY 430 (1066)
Q Consensus 404 ~dLA~l~y~~gdY~kA~~~l~~~~~~Y 430 (1066)
..||..|...|+|++|...|..++..-
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~ 103 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLR 103 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344444555555555555555444433
No 122
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=20.40 E-value=2.6e+02 Score=38.10 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCcc-hhHHHhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Q 001500 383 TKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 433 (1066)
Q Consensus 383 t~~Ai~~yk~~~R~R-sa~~L~~dLA~l~y~~gdY~kA~~~l~~~~~~Y~~e 433 (1066)
.+.|+..|.++-+.. .-..+...||..|+++|+|++|..+|..++......
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 456677777653322 122456889999999999999999999999866543
No 123
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=20.40 E-value=1.9e+02 Score=21.43 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 001500 38 FQESLAFMFEMAHLHEDALREYDELELCYLE 68 (1066)
Q Consensus 38 lkE~LA~lfe~~~L~eDAL~qYdELea~f~~ 68 (1066)
..-+||..|..+|.+++|+..|.+.-....+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 4568999999999999999988887666443
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=20.33 E-value=4.9e+02 Score=27.58 Aligned_cols=80 Identities=23% Similarity=0.199 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCcc-hhHHHhHHHHH-HHHhcCC--HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchH
Q 001500 384 KGAANNYHCSWWKR-HGVVLDGEIAA-VCFKHGN--YDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 459 (1066)
Q Consensus 384 ~~Ai~~yk~~~R~R-sa~~L~~dLA~-l~y~~gd--Y~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dY 459 (1066)
+.|+..|.++-+.. .-..+...+|. +|++.|+ +++|...|..++..--.+ ...+..++-++.++++.++-
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~~~A 163 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADYAQA 163 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHH
Confidence 45555566553322 11234577787 4677787 589999999988876665 45666777777788888877
Q ss_pred HHHHHHHhcc
Q 001500 460 LLSCVRLLSL 469 (1066)
Q Consensus 460 v~~~l~LLs~ 469 (1066)
+...-++|..
T Consensus 164 i~~~~~aL~l 173 (198)
T PRK10370 164 IELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhh
Confidence 7666666653
Done!