BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001501
(1066 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 1395 bits (3610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 687/798 (86%), Positives = 730/798 (91%), Gaps = 21/798 (2%)
Query: 240 MMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSV 299
MMKESQSK+N+T+RWDIGLNKKRVAYFVFPKE+NELRLVPGDELRLRYSGDA HP+WQSV
Sbjct: 338 MMKESQSKENLTVRWDIGLNKKRVAYFVFPKEENELRLVPGDELRLRYSGDAVHPSWQSV 397
Query: 300 GHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSG 359
GHVIKLTAQEEVALELRA+QGVP+D+NHGFSVDFVWKSTSFDRMQGAMK FAVDETSVSG
Sbjct: 398 GHVIKLTAQEEVALELRANQGVPIDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSG 457
Query: 360 YIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKT 419
YIYH LLGHEVE QMVRNTLPRRFG PGLPELNASQV AVKSVLQ+PISLIQGPPGTGKT
Sbjct: 458 YIYHQLLGHEVEAQMVRNTLPRRFGVPGLPELNASQVNAVKSVLQKPISLIQGPPGTGKT 517
Query: 420 VTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHL 479
VTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVE+L
Sbjct: 518 VTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEYL 577
Query: 480 TLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTC 539
TLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYK LKRATEREI+QSADVICCTC
Sbjct: 578 TLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTC 637
Query: 540 VGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAAR 599
VGA D RL+NFRFRQVLIDESTQATEPECLIPLVLG KQVVLVGDHCQLGPVIMCKKAAR
Sbjct: 638 VGAADLRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAAR 697
Query: 600 AGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659
AGLAQSLFERLV LG+KPIRLQVQYRMHP+LSEFPSNSFYEGTLQNGVTI ERQ++GIDF
Sbjct: 698 AGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDF 757
Query: 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYE 719
PWPVPNRPMFFYVQ+GQEEISASGTSYLNRTEAANVEK+VT FL+SGVVPSQIGVITPYE
Sbjct: 758 PWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYE 817
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPR 779
GQRAYIVNYM+RNG+LRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPR
Sbjct: 818 GQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPR 877
Query: 780 RLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPK 839
RLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKP+
Sbjct: 878 RLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPR 937
Query: 840 KIYNDRRLFFGAGPGIVPND-ISTSNPNAD---RRGSRARGYMPPGPPNGTHKPGLHPAG 895
KIYNDRRLF+G G G++ ND + NPNAD RG Y+P GPPNG +PGLHPAG
Sbjct: 938 KIYNDRRLFYGGGAGMIGNDNFGSGNPNADRRGSRGRAGGSYLPSGPPNGA-RPGLHPAG 996
Query: 896 FPMPRVPLPPFQGGPPSQPYAIPSRGAVHGPVGAVHHVPPPGSRGFGAGRGSAGAPIGSH 955
+P+PRVPL PF GGPPSQPYAIP+R GPVGAV H P PG+ GFGAGRG++ +G H
Sbjct: 997 YPIPRVPLSPFPGGPPSQPYAIPTR----GPVGAVPHAPQPGNHGFGAGRGTS---VGGH 1049
Query: 956 LQHQQNTQQPIGTIGSTFNFPSLENSNSQPSVGGPLTQPGFVNNMPVQGPSQTFRDGFSV 1015
L HQQ TQ +GTIG + NFP L++ NSQPS GGPL+QPG+ SQ FRDGFS+
Sbjct: 1050 LPHQQATQHNVGTIGPSLNFP-LDSPNSQPSPGGPLSQPGY--------GSQAFRDGFSM 1100
Query: 1016 GSMSQDFLGDDFKSQGSH 1033
G +SQDFL DD KSQGSH
Sbjct: 1101 GGISQDFLADDIKSQGSH 1118
Score = 323 bits (829), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 163/261 (62%), Positives = 191/261 (73%), Gaps = 21/261 (8%)
Query: 1 MDSQQTNLFETASQPDTGTDAYTFLEFNTQGESDFDAYPEFRSPVSWPTPSDSLSVDPTT 60
MDSQQ++LF+TASQPDT D YTFLEFNTQG+S+FD Y +F SP +WPTPSDS+S+
Sbjct: 1 MDSQQSDLFDTASQPDTVADEYTFLEFNTQGDSEFD-YQDFGSPTAWPTPSDSISI---- 55
Query: 61 PVTPATPSDSRSAPPASDHHHHHNHHRHSDSLAATSSPSKRGANNSSNT-----STSQIV 115
A +D A+DHH + + A + RG S +
Sbjct: 56 ----ADVADRGEGGAAADHHSEASSPSSLSAGAGNGAKVGRGGVGGSGGVSSSSQVDALA 111
Query: 116 EGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNT 175
G+ L+FEETGDD +GF+YGK DFTEHAC+YCG+SNPACVVRCNV SCRKWFCNSRGNT
Sbjct: 112 AGVGNLNFEETGDD-DGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNT 170
Query: 176 SGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCRE 235
SGSHIVNHLVRAKHKEVCLH+DSPLGETILECYNCGCRNVFLLGFISAKT+SVVVLLCR+
Sbjct: 171 SGSHIVNHLVRAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRD 230
Query: 236 PCLNMMKESQSKDNVTIRWDI 256
PCLN+ + KD + WD+
Sbjct: 231 PCLNV---NALKD---MNWDL 245
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2
Length = 1129
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/816 (58%), Positives = 596/816 (73%), Gaps = 60/816 (7%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDN-----------ELRLVPGDELRLRYSG 289
+KESQ++DN+T+RWD+GLNKKR+AYF PK D+ ++RL+ GDE+ LRY G
Sbjct: 320 LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKG 379
Query: 290 DAAHPAWQSVGHVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAM 347
D A P W+ +GHVIK+ +E+A+ELR+S G PV++ H F VDFVWKSTSFDRMQ A+
Sbjct: 380 DLA-PLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSAL 438
Query: 348 KTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPI 407
KTFAVDETSVSGYIYH LLGHEVE +++ LP+RF A GLP+LN SQV+AVK+VLQRP+
Sbjct: 439 KTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPL 498
Query: 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467
SLIQGPPGTGKTVTSA IVYH+A+QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAK
Sbjct: 499 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 558
Query: 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATERE 527
SREA+ SPV L LH Q+R++D+ EL KLQQLKDE GELSS+DEK+Y+ALKR ERE
Sbjct: 559 SREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSADEKRYRALKRTAERE 616
Query: 528 ISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQ 587
+ +ADVICCTCVGAGDPRLA +FR +LIDESTQATEPEC++P+VLGAKQ++LVGDHCQ
Sbjct: 617 LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ 676
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
LGPV+MCKKAA+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGV
Sbjct: 677 LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV 736
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
T +R G DF WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G
Sbjct: 737 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 796
Query: 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
P QIG+ITPYEGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+N
Sbjct: 797 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 856
Query: 768 EHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNN 827
EHQGIGFLNDPRRLNVALTRARYG++I+GNPK LSKQPLWN LL +YKE + LVEGPLNN
Sbjct: 857 EHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNN 916
Query: 828 LKQSMVQFQKPKKIYND--------RRLFFGAGPGIVPNDISTSNPNADRRGSRARGYMP 879
L++S++QF KP+K+ N + A I+P + + +G + Y
Sbjct: 917 LRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVY----DRSSQGRPSSMYFQ 972
Query: 880 PGPPNGTHKPGLHPAGFPMPRVPLPPFQGGPPSQPYAIPSRGAVHGPVGAVHHVPPPG-- 937
G G P+ +P+P PP +PPPG
Sbjct: 973 THDQIGMISAG--PSHVAAMNIPIPFNLVMPP---------------------MPPPGYF 1009
Query: 938 --SRGFGAGRGSAGAPIGSHLQHQQNTQQPIGTIGSTFNFPSLENSNSQPSVGGPLTQPG 995
+ G AGRG+ G + + P + + N + ++ SQP G LTQ G
Sbjct: 1010 GQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQ-G 1068
Query: 996 FVNNMPVQGPSQTFRDGFSVGSMSQD-FLGDDFKSQ 1030
+++ + PSQ + G S +SQD +LGD+FKSQ
Sbjct: 1069 YIS---MSQPSQMSQPGLSQPELSQDSYLGDEFKSQ 1101
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 111/156 (71%), Gaps = 15/156 (9%)
Query: 100 KRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRC 159
+ GA + S TSQ+ +A L+FEE +D Y D HAC YCG+ +PACVV C
Sbjct: 85 QNGAVDDSVAKTSQL---LAELNFEEDEEDT----YYTKDLPIHACSYCGIHDPACVVYC 137
Query: 160 NVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + +KWFCN RGNTSGSHIVNHLVRAK KEV LHKD PLGET+LECYNCGCRNVFLLG
Sbjct: 138 N--TSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLG 195
Query: 220 FISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD 255
FI AK +SVVVLLCR+PC + +S KD I WD
Sbjct: 196 FIPAKADSVVVLLCRQPCAS---QSSLKD---INWD 225
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2
Length = 1124
Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/820 (58%), Positives = 597/820 (72%), Gaps = 68/820 (8%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDN-----------ELRLVPGDELRLRYSG 289
+KESQ++DN+T+RWD+GLNKKR+A+F PK D+ ++RL+ GDE+ LRY G
Sbjct: 315 LKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKG 374
Query: 290 DAAHPAWQSVGHVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAM 347
D A P W+ +GHVIK+ +E+A+ELR+S G PV++ H F VDFVWKSTSFDRMQ A+
Sbjct: 375 DLA-PLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSAL 433
Query: 348 KTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPI 407
KTFAVDETSVSGYIYH LLGHEVE +++ LP+RF A GLP+LN SQV+AVK+VLQRP+
Sbjct: 434 KTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPL 493
Query: 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467
SLIQGPPGTGKTVTSA IVYH+A+QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAK
Sbjct: 494 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 553
Query: 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATERE 527
SREA+ SPV L LH Q+R++D+ EL KLQQLKDE GELSS+DEK+Y+ALKR ERE
Sbjct: 554 SREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSADEKRYRALKRTAERE 611
Query: 528 ISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQ 587
+ +ADVICCTCVGAGDPRLA +FR +LIDESTQATEPEC++P+VLGAKQ++LVGDHCQ
Sbjct: 612 LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ 671
Query: 588 LGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV 647
LGPV+MCKKAA+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGV
Sbjct: 672 LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV 731
Query: 648 TINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707
T +R G DF WP P++PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G
Sbjct: 732 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 791
Query: 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSN 767
P QIG+ITPYEGQR+Y+V YM +G+L +LY+E+E+ASVD+FQGREKD+IILSCVR+N
Sbjct: 792 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 851
Query: 768 EHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNN 827
EHQGIGFLNDPRRLNVALTRARYG++I+GNPK LSKQPLWN LL++YKE + LVEGPLNN
Sbjct: 852 EHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEGPLNN 911
Query: 828 LKQSMVQFQKPKKIYND--------RRLFFGAGPGIVPNDISTSNPNADRRGSRARGYMP 879
L++S++QF KP+K+ N + A I+P + R S+ R P
Sbjct: 912 LRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYD-------RSSQGR---P 961
Query: 880 PGPPNGTHKP----GLHPAGFPMPRVPLPPFQGGPPSQPYAIPSRGAVHGPVGAVHHVPP 935
TH P+ +P+P PP +PP
Sbjct: 962 SNMYFQTHDQISMISAGPSHVAAMNIPIPFNLVMPP---------------------MPP 1000
Query: 936 PG----SRGFGAGRGSAGAPIGSHLQHQQNTQQPIGTIGSTFNFPSLENSNSQPSVGGPL 991
PG + G AGRG+ G + + P + + N + ++ SQP G L
Sbjct: 1001 PGYFGQANGPAAGRGTPKTKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGAL 1060
Query: 992 TQPGFVNNMPVQGPSQTFRDGFSVGSMSQD-FLGDDFKSQ 1030
TQ G+V+ + PSQ + G S +SQD +LGD+FKSQ
Sbjct: 1061 TQ-GYVS---MSQPSQMSQPGLSQPELSQDSYLGDEFKSQ 1096
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 111/156 (71%), Gaps = 15/156 (9%)
Query: 100 KRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRC 159
+ GA + S TSQ+ +A L+FEE +D Y D HAC YCG+ +PACVV C
Sbjct: 80 QNGAVDDSVAKTSQL---LAELNFEEDEEDT----YYTKDLPVHACSYCGIHDPACVVYC 132
Query: 160 NVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLG 219
N + +KWFCN RGNTSGSHIVNHLVRAK KEV LHKD PLGET+LECYNCGCRNVFLLG
Sbjct: 133 N--TSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLG 190
Query: 220 FISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD 255
FI AK +SVVVLLCR+PC + +S KD I WD
Sbjct: 191 FIPAKADSVVVLLCRQPCAS---QSSLKD---INWD 220
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/708 (61%), Positives = 541/708 (76%), Gaps = 34/708 (4%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVG 300
+KESQ++DN+T+RWD+GLNKKR+AYF PK D+++RL+ GDE+ LRY GD A P W+ +G
Sbjct: 302 LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLA-PLWKGIG 360
Query: 301 HVIKL--TAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVS 358
HVIK+ + +E+A+ELR S G PV+I H + VDFVWKSTSFDRMQ A+KTFAVDETSVS
Sbjct: 361 HVIKVPDSYGDEIAIELRTSVGAPVEIPHNYQVDFVWKSTSFDRMQSALKTFAVDETSVS 420
Query: 359 GYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGK 418
GYIYH LLGHEVE ++ LP+RF A GLP+LN SQV+AVK+VLQRP+SLIQGPPGTGK
Sbjct: 421 GYIYHKLLGHEVEDVTIKCQLPKRFTANGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK 480
Query: 419 TVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEH 478
TVTSA IVYH+++QG G VLVCAPSN+AVDQL EKI TGLKVVRLCAKSREA+ SPV
Sbjct: 481 TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF 540
Query: 479 LTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCT 538
L LH Q+ ++D+ EL KLQQLKDE GELSS+DEK+Y+ALKR ERE+ +ADVI CT
Sbjct: 541 LALHNQISNMDS--MPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIWCT 598
Query: 539 CVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAA 598
CV AGDPRLA +FR +LIDESTQATEP+C+ P+ LGAKQ++L G+ +MCKKAA
Sbjct: 599 CVRAGDPRLAKMQFRSILIDESTQATEPKCIGPVELGAKQLIL-GEITASWSCVMCKKAA 657
Query: 599 RAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGID 658
+AGL+QSLFERLV+LG++PIRLQVQYRMHP+LS FPSN FYEG+LQNGVT +R G D
Sbjct: 658 KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFD 717
Query: 659 FPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPY 718
F WP P +PMFFYV GQEEI++SGTSYLNRTEAANVEKI T L++G P QIG+ITPY
Sbjct: 718 FQWPQPEKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPY 777
Query: 719 EGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDP 778
EGQR+Y+V YM +G+L +LY ++E+ASVD+FQGREKD+IILSCVR+NEHQGIGFLNDP
Sbjct: 778 EGQRSYLVQYMQFSGSLHTKLY-QVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP 836
Query: 779 RRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKP 838
RRLNVALTRA+YG++I+GNPK LSKQPLWN LL +YKE + LVEGPLNNL++S++QF KP
Sbjct: 837 RRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKP 896
Query: 839 KKIYND------RRLFFGAGPGIVPNDISTSNPNADRRGSRARGYMPPGPPNG------T 886
+K+ N + A ++P ++ ++ G + Y G +
Sbjct: 897 RKLVNTINPRFMSTAMYDAREALIP---GSAYDRSNTGGRPSNMYFQTHDQIGMIGAAAS 953
Query: 887 HKPGLH---PAGFPMPRVPLPPFQG---GPPSQPYAIPSRGAVHGPVG 928
H L+ P MP +P P +QG GP + RGA+ G G
Sbjct: 954 HLAALNIPIPFNLVMPPMPPPSYQGQTNGPAA------GRGAMKGKSG 995
Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 115/182 (63%), Gaps = 16/182 (8%)
Query: 75 PASDHHHHHNHHRHSDSLAATSSPSKRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFE 134
P+ H + + L G + S SQ+ +A L+FEE +D
Sbjct: 41 PSQTQTQGHTQSQLDNQLNGPDDGLHNGGMDDSVAKASQL---LAELNFEEDEEDT---- 93
Query: 135 YGKADFTEHACR-YCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVC 193
Y D HACR YCG+ +PACVV CN + +KWFCN RGNTSGSHIVNHLVRAK KEV
Sbjct: 94 YYTKDLPVHACRSYCGIHDPACVVYCN--TSKKWFCNGRGNTSGSHIVNHLVRAKCKEVT 151
Query: 194 LHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNMMKESQSKDNVTIR 253
LHKD PLGET+LECYNCGCRNVFLLGFI AK +SVVVLLCR+PC + +S KD I
Sbjct: 152 LHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCAS---QSSLKD---IN 205
Query: 254 WD 255
WD
Sbjct: 206 WD 207
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/612 (66%), Positives = 486/612 (79%), Gaps = 9/612 (1%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KE+QS+D + +RW +GLN K VA F+ PK E +++L GDE+RL+Y G+ P W+ V
Sbjct: 301 LKEAQSEDGLQVRWHLGLNSKHVASFILPKIESGDVKLAVGDEMRLKYKGEL-RPPWEGV 359
Query: 300 GHVIKL--TAQEEVALELRAS---QGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDE 354
G+VIK+ +EV +ELR S + VP + H FS D+VWK+TS+DRMQ AMKTFAVDE
Sbjct: 360 GYVIKIPNNQSDEVEVELRKSANDKSVPTECTHNFSADYVWKATSYDRMQLAMKTFAVDE 419
Query: 355 TSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPP 414
SVSGYI+H LLGHEV+V + T+P++F PGLPELNASQ+ A+K VL P+SLIQGPP
Sbjct: 420 MSVSGYIFHKLLGHEVQVAPTKITMPKKFHVPGLPELNASQIAAIKQVLSNPLSLIQGPP 479
Query: 415 GTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSS 474
GTGKTVTSA I+YH+AK QVLVCAPSNVAVDQL E+I TGLKVVRL AKSRE V S
Sbjct: 480 GTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVES 539
Query: 475 PVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADV 534
V L LH QVR ++T+ K EL L +LK E GELSS DEK++K L R EREI Q+ADV
Sbjct: 540 SVSFLALHEQVR-MNTTNK-ELDGLVKLKTETGELSSQDEKRFKQLTRQAEREILQNADV 597
Query: 535 ICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMC 594
+CCTCVGAGDPRL+ +FR VLIDESTQ+ EPEC+IPLVLG KQVVLVGDH QLGPVIM
Sbjct: 598 VCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMN 657
Query: 595 KKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQS 654
KKAA+AGL QSLFERLV L PIRL+VQYRMHP LSEFPSN FYEG+LQNGVT ER
Sbjct: 658 KKAAKAGLNQSLFERLVKLQFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLR 717
Query: 655 SGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGV 714
+DFPWPVP PM F+ +G EEISASGTSYLNRTEAANVEKIVT F ++GV P+ IGV
Sbjct: 718 KDVDFPWPVPETPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPADIGV 777
Query: 715 ITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGF 774
ITPYEGQR+YIVN M G +++ Y+E+EVASVD+FQGREKD+I+LSCVRSNE+QGIGF
Sbjct: 778 ITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGF 837
Query: 775 LNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQ 834
L+DPRRLNVALTRA+YG+VI+GNPKVL K LW+ LL H+K+ +CLVEGPL NL+ S++Q
Sbjct: 838 LSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKDKKCLVEGPLTNLQPSLLQ 897
Query: 835 FQKPKKIYNDRR 846
F +P++ Y +R
Sbjct: 898 FGRPRQAYRPQR 909
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 97/142 (68%), Gaps = 16/142 (11%)
Query: 115 VEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGN 174
V+GM L + ++ E HAC YCG+ +P+ VV+C +C KWFC+++G+
Sbjct: 81 VDGMKSLKLDAPVEEKE--------LPPHACAYCGIHSPSSVVKC--LTCNKWFCSAKGS 130
Query: 175 TSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCR 234
SHIVNHLVRA+HKEV LH +S LG+T+LECYNCG +NVF+LGFI AK+++VVVLLCR
Sbjct: 131 AFSSHIVNHLVRARHKEVQLHPESSLGDTVLECYNCGTKNVFILGFIPAKSDTVVVLLCR 190
Query: 235 EPCLNMMKESQSKDNVTIRWDI 256
+PC + +KD + WDI
Sbjct: 191 QPC---GASTSTKD---MSWDI 206
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/609 (64%), Positives = 485/609 (79%), Gaps = 10/609 (1%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVG 300
+KES +++N+ +RWD+GLNKK +AYF K D++++L+ GDELRL Y G+ +P W +G
Sbjct: 297 LKESATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYNP-WSEIG 355
Query: 301 HVIKLTAQ--EEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVS 358
HVIK+ ++V LEL++S PV F+VDF+WK TSFDRM A+ FA+D SVS
Sbjct: 356 HVIKVPDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWKCTSFDRMTRALCKFAIDRNSVS 415
Query: 359 GYIYHHLLGH----EVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPP 414
+IY LLGH + + R P+ F AP LP+LN SQV+AVK LQRP+SLIQGPP
Sbjct: 416 NFIYSRLLGHGRADSNDEVLFRGPQPKLFSAPHLPDLNRSQVYAVKHALQRPLSLIQGPP 475
Query: 415 GTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSS 474
GTGKTVTSA IVY + K G VLVCAPSN AVDQL EKI T LKVVR+CAKSREA+ S
Sbjct: 476 GTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDS 535
Query: 475 PVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADV 534
PV L LH Q+R+++T+ SEL KLQQLKDE GELSS+DEK+Y+ LKRA E ++ ++ADV
Sbjct: 536 PVSFLALHNQIRNMETN--SELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAADV 593
Query: 535 ICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMC 594
ICCTCVGAGD RL+ +F +LIDES Q+TEPEC++P+VLGAKQ++LVGDHCQLGPV+MC
Sbjct: 594 ICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMC 653
Query: 595 KKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQS 654
KKAARAGL+QSLFERLV+LG++P RL+VQYRMHP LS+FPSN FYEG+LQNGV +R+
Sbjct: 654 KKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRL 713
Query: 655 SGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGV 714
+DFPWP P RPMFF V GQEEI+ SGTS+LNRTEAANVEKI T FL++G+ P QIG+
Sbjct: 714 K-LDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGI 772
Query: 715 ITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGF 774
ITPYEGQRAY+V YM G+L +LY+EIE+ASVD+FQGREKD II+SCVRSNE QGIGF
Sbjct: 773 ITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGF 832
Query: 775 LNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQ 834
LNDPRRLNVALTRA++GI+I+GNPKVL+KQ LWN LL YK+ + LVEG LNNLK+S++
Sbjct: 833 LNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIH 892
Query: 835 FQKPKKIYN 843
FQKPKK+ N
Sbjct: 893 FQKPKKLVN 901
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/185 (51%), Positives = 119/185 (64%), Gaps = 17/185 (9%)
Query: 99 SKRGANNSSNTSTSQIVEGMAGLSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVR 158
++R + S+ + I +A L FEE DD G Y K + HAC+YCG+ +PA VV
Sbjct: 56 AQRCSAGDSHPRLASITNDLADLQFEEE-DDEPGSSYVK-ELPPHACKYCGIHDPATVVM 113
Query: 159 CNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLL 218
CN +CRKWFCN RG+TSGSHI+NHLVRAKH+EV LH + PLGETILECY+CG RNVF+L
Sbjct: 114 CN--NCRKWFCNGRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVL 171
Query: 219 GFISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWDIGLNKKRVAYFVF-------PKE 271
GFI AK +SVVVLLCR+PC ++ KD + WD K +A F P E
Sbjct: 172 GFIPAKADSVVVLLCRQPC---AAQNSLKD---MNWDQEQWKPLIADRCFLAWLVKQPSE 225
Query: 272 DNELR 276
+LR
Sbjct: 226 QGQLR 230
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/616 (59%), Positives = 469/616 (76%), Gaps = 15/616 (2%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KESQ++ +V +RWD +NK+ A+F+ PK E E+RL GDE++L Y G+ P W S
Sbjct: 241 LKESQTQKDVVVRWDQAINKRYTAWFLLPKLESGEIRLAIGDEMKLTYEGELRAP-WSST 299
Query: 300 GHVIKL--TAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSV 357
G+VIK+ +EV LEL+ S VP++ H FSVD+VWKSTSFDRMQ A++ FA D + +
Sbjct: 300 GYVIKIPNNVSDEVGLELKRSDKVPIECTHNFSVDYVWKSTSFDRMQTALRLFATDGSRL 359
Query: 358 SGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTG 417
S ++YH LLGH++ ++ LP P LP+LNASQ AV++VL +P+SLIQGPPGTG
Sbjct: 360 SSFLYHKLLGHDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTG 419
Query: 418 KTVTSAAIVYHMA------KQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREA 471
KTVTSA++VYH+A ++ VLVCAPSNVAVDQLAEKI TGL+VVR+ AKSRE
Sbjct: 420 KTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSRED 479
Query: 472 VSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQS 531
+ S V L+LH Q+++ + EL +L +L+ E ELS DEKK + L A E+E+ ++
Sbjct: 480 IESSVSFLSLHEQIKNYKFN--PELQRLLKLRSENNELSIQDEKKLRILVAAAEKELLRA 537
Query: 532 ADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPV 591
A VICCTCVGAGD R++ ++FR VLIDE+TQA+EPEC+IPLVLGAKQVVLVGDH QLGPV
Sbjct: 538 AHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPV 597
Query: 592 IMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINE 651
+M KK A A L+QSLFERL++LG P RL VQYRMHP LSEFPSN+FYEGTLQNGVT +E
Sbjct: 598 VMNKKVALASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSE 657
Query: 652 RQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQ 711
R + +DFPW P+ P+ FY GQEE+SASGTS+LNRTEA+ EKIVTTFLRS V+P Q
Sbjct: 658 RIARHVDFPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQ 717
Query: 712 IGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQG 771
IG++TPY+GQR+YIV YM NG++++ LYK +EVASVD+FQGREKD+IILSCVRS+EHQG
Sbjct: 718 IGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQG 777
Query: 772 IGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQS 831
IGF+NDPRRLNVALTRA+YG+++LGNPKVL+K LW + H KE LVEG LN+L++
Sbjct: 778 IGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQKF 837
Query: 832 MVQF---QKPKKIYND 844
+ QKP+K D
Sbjct: 838 SLTLTPPQKPQKFKRD 853
Score = 143 bits (360), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 94/144 (65%), Gaps = 14/144 (9%)
Query: 140 FTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSP 199
++E C YC + NP +++C C KWFCN RG + SHI++HLVRA+HK+V LH S
Sbjct: 39 YSEEHCAYCHIKNPNSILKC--LHCNKWFCNVRGKSGASHIISHLVRARHKQVALHSHSS 96
Query: 200 LGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNMMKESQSKDNVTIRWD---- 255
L +T+LECYNCG RNVFLLGFI AK ++VVVLLCR+PC + S +KD + WD
Sbjct: 97 LSDTVLECYNCGTRNVFLLGFIPAKAKTVVVLLCRQPC---ARASIAKD---MNWDLTQW 150
Query: 256 --IGLNKKRVAYFVFPKEDNELRL 277
I +++ + + + P + E +L
Sbjct: 151 QPIISDRQFLPWLITPPSEEEQKL 174
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/603 (59%), Positives = 444/603 (73%), Gaps = 9/603 (1%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KESQ+ +++++ W + LN + +A F E NEL++ GDE+ L YSG HP W+
Sbjct: 256 LKESQALEHISVSWSLALNNRHLASFTLSTFESNELKVAIGDEMILWYSG-MQHPDWEGR 314
Query: 300 GHVIKL--TAQEEVALELRASQGVP-VDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETS 356
G++++L + Q+ LEL+ S+ P + GF+ +F+WK TS+DRMQ A+K FA+D+ S
Sbjct: 315 GYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKS 374
Query: 357 VSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGT 416
+SGY+Y+ +LGH+V LP+ F P +LN+SQ AV VLQRP+SLIQGPPGT
Sbjct: 375 ISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGT 434
Query: 417 GKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV 476
GKTVTSA IVYH++K + ++LVCAPSNVAVD LA K+ GLKVVRL AKSRE V S V
Sbjct: 435 GKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSV 494
Query: 477 EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVIC 536
+L LH V K EL L +LKDE GELS+SD K++ L R TE EI ADV+C
Sbjct: 495 SNLALHNLVGR---GAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVC 551
Query: 537 CTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKK 596
CTCVGAGD RL + +FR VLIDESTQA+EPECLIP+V GAKQV+LVGDH QLGPVI+ +K
Sbjct: 552 CTCVGAGDKRL-DTKFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERK 610
Query: 597 AARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656
AA AGL QSLFERL+ LG PIRL+VQYRM+P LSEFPSN FYEG+LQNGVTI +R
Sbjct: 611 AADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPN 670
Query: 657 IDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVIT 716
FPWP+ PM F+ G+EEISA+GTS+LNR EA N E+I+T R GV P QIGVIT
Sbjct: 671 SKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVIT 730
Query: 717 PYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLN 776
PYEGQRAYI+ YM NG+L + LY ++EVASVD+FQGREKDYIILSCVR+NE Q IGFL
Sbjct: 731 PYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLR 790
Query: 777 DPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQ 836
DPRRLNV LTRA+YG+VILGNP+ L++ LWN LL H++E CLVEG L+NL+ VQ
Sbjct: 791 DPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTVQLV 850
Query: 837 KPK 839
+P+
Sbjct: 851 RPQ 853
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 10/156 (6%)
Query: 123 FEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVN 182
FEE GF A ++++C YCG+ + CV++CN SC+KWFCN++ TS SHIVN
Sbjct: 42 FEEAQVTETGFRSPSA--SDNSCAYCGIDSAKCVIKCN--SCKKWFCNTKNGTSSSHIVN 97
Query: 183 HLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNMMK 242
HLV + H V LH DS LG+T+LECYNCG +NVFLLGF+SAK+E+VVVLLCR PC
Sbjct: 98 HLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSAKSEAVVVLLCRIPC----A 153
Query: 243 ESQSKDNVTIRWDIGLNKKRVAYFVF--PKEDNELR 276
++++ + T +W + +++ +V P E+ +L+
Sbjct: 154 QTKNANWDTDQWQPLIEDRQLLSWVAEQPTEEEKLK 189
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/593 (57%), Positives = 438/593 (73%), Gaps = 7/593 (1%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNELRLVPGDELRLRYSGDAAHPAWQSV 299
+KES S+ T+RW+ GL + +A+F P+ D ++L GDELRL++S W +
Sbjct: 292 VKESASQAVGTVRWEQGLRQSVLAFFHLPQFADGVMKLAKGDELRLKHSQTVDGSEWTKI 351
Query: 300 GHVIKLTAQ--EEVALELRASQGVPV-DINHGFSVDFVWKSTSFDRMQGAMKTFAVDETS 356
G V K+ +EV +E+R + V + F+VD VW +T+F+R A+ D +
Sbjct: 352 GSVFKIPDNHGDEVGIEIRGAVDKSVMESRIMFTVDVVWNATTFERQYKALAALLNDSKA 411
Query: 357 VSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGT 416
+S Y+Y LLGH E M++ LPRR GLPELN+SQ+ AVK VL RP+SLIQGPPGT
Sbjct: 412 ISPYLYQKLLGHPAEEMMLKFDLPRRLSVAGLPELNSSQMQAVKQVLTRPLSLIQGPPGT 471
Query: 417 GKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV 476
GKTV SA IVYH+ ++ +G VLVC+PSN+AVD LAEKI TGLKVVRLCA+SRE + V
Sbjct: 472 GKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDHLAEKIHKTGLKVVRLCARSREHSETTV 531
Query: 477 EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVIC 536
+LTL +Q++ + +E L KL QLKDE GEL D+ +Y LKR E E+ +ADVIC
Sbjct: 532 PYLTLQHQLKVMGGAE---LQKLIQLKDEAGELEFKDDLRYMQLKRVKEHELLAAADVIC 588
Query: 537 CTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKK 596
CTC A D RL+ R R VLIDESTQATEPE L+ ++ G +Q+VLVGDHCQLGPV++CKK
Sbjct: 589 CTCSSAADARLSKIRTRTVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKK 648
Query: 597 AARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656
AA AGL+QSLFERLVLLG++P RLQVQYRMHP LSEFPSN FY+G+LQNGVT N+R +G
Sbjct: 649 AAIAGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTG 708
Query: 657 IDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVIT 716
+D+ WP PN+P FF+ G EE+SASGTS+LNRTEAANVEK+V+ +++GV P QIGVIT
Sbjct: 709 VDWHWPKPNKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQIGVIT 768
Query: 717 PYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLN 776
YEGQR++IVNYM G L +LY+ +E+ASVD+FQGREKDYII++CVRSN+ GIGFL+
Sbjct: 769 SYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLS 828
Query: 777 DPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLK 829
DPRRLNVA+TRA+YG+V++GN KVL++ LW+ L+ HYK E L EGP+N LK
Sbjct: 829 DPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYKSKEMLYEGPINALK 881
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 80/108 (74%), Gaps = 4/108 (3%)
Query: 142 EHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLG 201
EHACRYCG+S+P CV +C V CRKWFCNS TSG HIV+H+VR++HKE HKDSP G
Sbjct: 92 EHACRYCGISDPLCVAKCTV--CRKWFCNSNDGTSGGHIVHHMVRSQHKEAYTHKDSPCG 149
Query: 202 ETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNMMKESQSKDN 249
+T LECY CG +NVF LGFI K + VVV++CR PC ++ Q+ DN
Sbjct: 150 DTQLECYRCGSKNVFNLGFIPGKKDQVVVIICRTPCASIA--FQNDDN 195
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/611 (57%), Positives = 441/611 (72%), Gaps = 5/611 (0%)
Query: 241 MKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRY-SGDAAHPAWQSV 299
++ES S+ ++I W G+NK+ A F F + D E ++VPGDEL+L++ S W+
Sbjct: 385 LRESLSQSGISIEWSQGINKRYTATFPFSRSDLEFKVVPGDELKLQFISSTGGVIEWEDT 444
Query: 300 GHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSG 359
G VI + + ++LE ++ + ++ VW+STS +R+ AMK+FA+ E ++S
Sbjct: 445 GRVIHIDDENLLSLETKSRCSFDSGPKGSYRMEMVWRSTSSERILSAMKSFAIKEQALSS 504
Query: 360 YIYHHLLGH-EVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGK 418
Y+YH LLGH ++ + LP F LP LN SQ+ AV VL P+SLIQGPPGTGK
Sbjct: 505 YLYHALLGHPDIPPAPLDIQLPTNFHLKNLPRLNESQISAVNKVLTAPLSLIQGPPGTGK 564
Query: 419 TVTSAAIVYHMAK--QGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV 476
TV S+ I++H+ K +G +VLVC PSNVA+DQL K+ GLKVVRL +K RE V+SPV
Sbjct: 565 TVISSFIIHHLVKYVKGNDKVLVCTPSNVAIDQLTGKLHEIGLKVVRLSSKLREEVASPV 624
Query: 477 EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVIC 536
EHLTLH QV LD EL KL++LK+ G LS+ DEK+Y L+R E I + ADVIC
Sbjct: 625 EHLTLHKQVYKLDQMGDGELGKLRKLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVIC 684
Query: 537 CTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKK 596
TCVGAGDPRL+ FRF +LIDESTQA+EPECLIPL++GAKQV+LVGDH QLGPV++CKK
Sbjct: 685 ATCVGAGDPRLSQFRFPHILIDESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKK 744
Query: 597 AARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSG 656
AGL+QSLFERL+ LG P RL +QYRMHPSL+EFPSN+ YEG L + ++ +R S
Sbjct: 745 VVDAGLSQSLFERLISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQS 804
Query: 657 IDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVIT 716
FPWP P PMFF+ G EEIS+SGTS++N TEA+ EKIVT FL G +P QIG+IT
Sbjct: 805 -KFPWPQPKDPMFFFNCTGSEEISSSGTSFINTTEASICEKIVTKFLELGSLPGQIGIIT 863
Query: 717 PYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLN 776
PYEGQRAYI ++M ++G L +LYK IEVASVDSFQGREKDYIILSCVRSN++QGIGFL
Sbjct: 864 PYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQ 923
Query: 777 DPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQ 836
DPRRLNVALTRAR+G++ILGN KVLSK PLWN L++H+K LVEG L NLKQS V Q
Sbjct: 924 DPRRLNVALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKNVLVEGSLANLKQSPVILQ 983
Query: 837 KPKKIYNDRRL 847
KPKK+Y +L
Sbjct: 984 KPKKLYGQGKL 994
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 84/117 (71%), Gaps = 8/117 (6%)
Query: 121 LSFEETGDDVEGFEYGKADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHI 180
L+FEE +++E HAC YC + VV+C PSC KWFCN +G T SHI
Sbjct: 168 LNFEEPQEEIE--------LPAHACAYCATHELSTVVKCMHPSCGKWFCNGKGKTKSSHI 219
Query: 181 VNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPC 237
+ HLV++KHKEV LH +S G+T LEC+NCGC+N+FLLGFI+A+TESVVVLLCR+PC
Sbjct: 220 ITHLVKSKHKEVALHPESSFGDTTLECFNCGCKNIFLLGFITARTESVVVLLCRDPC 276
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 178/487 (36%), Positives = 255/487 (52%), Gaps = 76/487 (15%)
Query: 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSNVAVD 448
+LN SQ AV+ VL I+++QGPPGTGKT T I+ + ++ ++C A SN+A+D
Sbjct: 648 KLNRSQKTAVEHVLNNSITILQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASNIAID 707
Query: 449 QLAEKISAT--GLKVVRLCAKSREAVSS---PVEHLTLHYQV-RHLDTSEKSELHKLQQL 502
+AEKI +K++R+ +K +E S P+ + LH V ++L + +K ++
Sbjct: 708 NIAEKIMENRPQIKILRILSKKKEQQYSDDHPLGEICLHNIVYKNLSPDMQVVANKTRR- 766
Query: 503 KDEQGEL--SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLI-DE 559
GE+ S D K YK R T + +SQS +I T + AG L + V+I DE
Sbjct: 767 ----GEMISKSEDTKFYKEKNRVTNKVVSQS-QIIFTTNIAAGGRELKVIKECPVVIMDE 821
Query: 560 STQATEPECLIPLVL-GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGL--K 616
+TQ++E L+PL L G + V VGD QL + L SLFER++ G
Sbjct: 822 ATQSSEASTLVPLSLPGIRNFVFVGDEKQLSSF-----SNIPQLETSLFERVLSNGTYKN 876
Query: 617 PIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFY----- 671
P+ L QYRMHP +SEFP Y G L++GVT ++ WP P+FFY
Sbjct: 877 PLMLDTQYRMHPKISEFPIKKIYNGELKDGVTDEQK-------AWPGVQHPLFFYQCDLG 929
Query: 672 ----VQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP-SQIGVITPYEGQRAYIV 726
V+ Q +I G +Y N+ E + KI+ + VP +IGVITPY QR +
Sbjct: 930 PESRVRSTQRDIV--GFTYENKHECVEIVKIIQILMLDKKVPLEEIGVITPYSAQRDLLS 987
Query: 727 NYMSRNGALR------QQLYKEIE--------------------------VASVDSFQGR 754
+ +++N + QQ Y EIE VA+VDSFQG
Sbjct: 988 DILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHVATVDSFQGH 1047
Query: 755 EKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK-QPLWNGLLTH 813
EK +II SCVR+N IGFL D RRLNVALTRA++G++++GN VL K PLW +T+
Sbjct: 1048 EKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGLIVVGNKNVLRKGDPLWKDYITY 1107
Query: 814 YKEHECL 820
+E E +
Sbjct: 1108 LEEQEVI 1114
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 172/532 (32%), Positives = 279/532 (52%), Gaps = 55/532 (10%)
Query: 298 SVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSV 357
SV V+ + +++ L++ + +P + V V + T ++RM+ M F
Sbjct: 119 SVEGVVTRVHERHISVALKSEEDIPSSVTRLSVVKLVNRVT-YERMRHTMLEFKRSIPEY 177
Query: 358 SGYIYHHLLGHE-----VEVQMVRNTLPRRFGAPGLPELNASQVFAVK-SVLQRPISLIQ 411
+++ L+G + ++ +++ + + F ELNASQ AVK S+ + +SLI
Sbjct: 178 RNSLFYTLIGRKKADVSIDQKLIGDI--KYFN----KELNASQKKAVKFSIAVKELSLIH 231
Query: 412 GPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREA 471
GPPGTGKT T I+ + + + ++LVC SN+AVD + +++S++G+ +VRL +R
Sbjct: 232 GPPGTGKTHTLVEIIQQLVLRNK-RILVCGASNLAVDNIVDRLSSSGIPMVRLGHPAR-L 289
Query: 472 VSSPVEHLTLHYQVRHLDT-------SEKSE--LHKLQQLKD--EQGELSSSDE---KKY 517
+ S ++H +L R D SE + L K+ + K+ E+ E+ + K Y
Sbjct: 290 LPSILDH-SLDVLSRTGDNGDVIRGISEDIDVCLSKITKTKNGRERREIYKNIRELRKDY 348
Query: 518 KALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAK 577
+ + T I ++ V+ CT GAG +L RF V+IDE++QA EP+C IPL LG
Sbjct: 349 RKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPL-LGMN 407
Query: 578 QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPS 635
+V+L GDH QL P + K+ S+FERLV L L +QYRMH +S+FPS
Sbjct: 408 KVILAGDHMQLSPNVQSKRPY-----ISMFERLVKSQGDLVKCFLNIQYRMHELISKFPS 462
Query: 636 NSFYEGTLQNGVTINERQSSGIDF--PWPVPNRPMFFYVQMG--QEEISASGT------S 685
++FY+ L + +R ++ + + P++FY +G QE+ + S
Sbjct: 463 DTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDS 522
Query: 686 YLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEV 745
N EA V ++ L +G+ I V+TPY Q A I + G E+E+
Sbjct: 523 KSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKEKGI-------EVEM 575
Query: 746 ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGN 797
SVD QGREK+ II S VRSN+ + +GFL + RRLNVA+TR + + ++G+
Sbjct: 576 GSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGD 627
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 179/578 (30%), Positives = 264/578 (45%), Gaps = 117/578 (20%)
Query: 347 MKTFAVDETSVSGYIYHHLLGHEVEV----QMVRNTLPRRFGAPGLPELNASQVFAVKSV 402
+ TF + G Y HL + Q V+++ A ++N Q A+
Sbjct: 1082 LATFTRQYAGIRGLPYFHLADDIIRARPCSQPVKHSSSEIKAAMKRYQVNEPQAKAIMCA 1141
Query: 403 LQRP-ISLIQGPPGTGKTVTSAAIV---------YHMAK--------QGQGQVLVCAPSN 444
L +LIQGPPGTGKT T I+ YH+ + + + Q+L+CAPSN
Sbjct: 1142 LDNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTESKQQILLCAPSN 1201
Query: 445 VAVDQLAEKISATGL---------KVVRLCAKSREAVSSPVEHLTLHYQVRH-------- 487
AVD++ ++ L +VVR+ + E ++ V L+L YQ
Sbjct: 1202 AAVDEVLLRLKRGFLLENGEKYIPRVVRI--GNPETINVSVRDLSLEYQTEKQLLEVNQG 1259
Query: 488 -LDTSEKSEL-----------HKLQQL------------------KDEQGEL-------- 509
+D EL K+++L K+ Q ++
Sbjct: 1260 AIDLGSLQELTRWRDTFYDCIQKIEELEKQIDVARDVAEDTKSLGKELQNKINEKNLAEQ 1319
Query: 510 --------SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA--NFRFRQVLIDE 559
S + K+ L++ ++ I + ADV+C T G+G +A + F V+IDE
Sbjct: 1320 KVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDLVAHSSLNFSTVIIDE 1379
Query: 560 STQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL-LGLKPI 618
+ QA E + +IPL GAK+ +LVGD QL P ++ KKAA +QSLF R+ +
Sbjct: 1380 AAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMC 1439
Query: 619 RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQM---- 674
L +QYRMHP +S FPS FY+ L++G + E+ W V P F ++
Sbjct: 1440 LLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQ----VWHV--NPKFTQYRLFDVR 1493
Query: 675 GQEEISASGTSYLNRTEAANVEKIVTTFLRSG---VVPSQIGVITPYEGQ-----RAYIV 726
G+E S + ++Y N E + +V L +IGVITPY Q RA+ V
Sbjct: 1494 GKERTSNTMSTY-NLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKV 1552
Query: 727 NYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALT 786
Y + I++ +VD FQG+EKD I SCV+S GIGFL D RRLNVALT
Sbjct: 1553 KY-------GKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALT 1605
Query: 787 RARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGP 824
RAR ++I+GN + L LW L+ + LVE P
Sbjct: 1606 RARSSLLIIGNMETLKTDDLWGSLVDDALSRK-LVESP 1642
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 186/640 (29%), Positives = 298/640 (46%), Gaps = 136/640 (21%)
Query: 315 LRASQGVPVDI------NHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGH 368
L+ ++G VD+ NH FS +S + M T + +++ G Y+ L+G
Sbjct: 1250 LKNTKGGNVDVTLRIHRNHSFSKFLTLRSEIYCVKVMQMTTIEREYSTLEGLEYYDLVG- 1308
Query: 369 EVEVQMVRNTLPRRFGAPGLP------ELNASQVFA-VKSVLQRPISLIQGPPGTGKTVT 421
++ + + P A + +LN SQ A V SV + SLIQGPPGTGKT T
Sbjct: 1309 --QILQAKPSPPVNVDAAEIETVKKSYKLNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKT 1366
Query: 422 SAAIV-YHMAKQG-----------------------QGQVLVCAPSNVAVDQLAEKISAT 457
I+ Y ++ + + ++L+CAPSN AVD++ ++ +
Sbjct: 1367 ILGIIGYFLSTKNASSSNVIKVPLEKNSSNTEQLLKKQKILICAPSNAAVDEICLRLKSG 1426
Query: 458 GL---------KVVRLCAKSREAVSSPVEHLTL-----------HYQVRH---------- 487
++VR+ + V+ ++ LTL +Y++R
Sbjct: 1427 VYDKQGHQFKPQLVRVGRS--DVVNVAIKDLTLEELVDKRIGERNYEIRTDPELERKFNN 1484
Query: 488 ----------------------LDTSEKSELH-KLQQL----------KDEQGELSSSDE 514
+ T + S+L K+++L +DE E +S +
Sbjct: 1485 AVTKRRELRGKLDSESGNPESPMSTEDISKLQLKIRELSKIINELGRDRDEMREKNSVNY 1544
Query: 515 KKYKALKRATEREISQSADVICCTCVGAGDPRLANF--RFRQVLIDESTQATEPECLIPL 572
+ +R + I +D+IC T G+ LA +F V+IDE+ Q TE +IPL
Sbjct: 1545 RNRDLDRRNAQAHILAVSDIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPL 1604
Query: 573 VLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSE 632
G K+ ++VGD QL P ++ A+ QSLF R+ P L VQYRMHPS+S+
Sbjct: 1605 RYGGKRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEK-NSSPYLLDVQYRMHPSISK 1663
Query: 633 FPSNSFYEGTLQNG---VTINERQSSGIDFPW--PVPNRPM-FFYVQMGQEEISASGTSY 686
FPS+ FY+G L++G +N+R PW P P FF + G++E +A SY
Sbjct: 1664 FPSSEFYQGRLKDGPGMDILNKR-------PWHQLEPLAPYKFFDIISGRQEQNAKTMSY 1716
Query: 687 LNRTEAANVEKIVTTFLRSGV----VPSQIGVITPYEGQRAYIVNYMSRN-GALRQQLYK 741
N E ++V R +IG+I+PY Q + +R G + + K
Sbjct: 1717 TNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGM---INK 1773
Query: 742 EIEVASVDSFQGREKDYIILSCVRSNEHQG-IGFLNDPRRLNVALTRARYGIVILGNPKV 800
I+ ++D FQG+EK+ I++SCVR+++ + +GFL D RR+NVALTRA+ I +LG+ +
Sbjct: 1774 SIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRS 1833
Query: 801 LSKQPLWNGLLTHYKEHECLVEG------PLNNLKQSMVQ 834
L+K LW L+ K+ CL P NN QS+++
Sbjct: 1834 LAKSKLWRDLIEDAKDRSCLAYACSGFLDPRNNRAQSILR 1873
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 168/544 (30%), Positives = 254/544 (46%), Gaps = 112/544 (20%)
Query: 391 LNASQVFAV-KSVLQRPISLIQGPPGTGKTVTSAAIVYHMA----------------KQG 433
+N Q +A+ S + +LIQGPPGTGKT T ++ + K
Sbjct: 1271 VNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTS 1330
Query: 434 QGQVLVCAPSNVAVDQLAEKISA-----TGLK----VVRL-------------------- 464
+ ++L+CAPSN A+D++ +I A G+K V+R+
Sbjct: 1331 KNKILICAPSNAAIDEILLRIKAGVYDHEGIKFFPKVIRVGFGDSISVHAKEFTLEEQMI 1390
Query: 465 --------------------------CAKSREAVSSPVEHL--------TLHYQVRHLDT 490
K R+++ +E L Q+R + T
Sbjct: 1391 KQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLREDLEKFRSTGKNSSILEAQLREI-T 1449
Query: 491 SEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN- 549
+K + L+Q D+ E S + LK+ + ++ Q AD++C T +G L N
Sbjct: 1450 KQK---NMLEQSLDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATLSASGHELLLNA 1506
Query: 550 -FRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFE 608
FR V+IDE+ QA E +IPL G + V+VGD QL P ++ K +A+ G +QSL+
Sbjct: 1507 GLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYV 1566
Query: 609 RLVLL-GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPW---PVP 664
R+ L +QYRM+P +S FPS FY L +G ++ S PW P
Sbjct: 1567 RMFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSR----PWHEDPQL 1622
Query: 665 NRPMFFYVQMGQEEISASGTSYLNRTEAANV----EKIVTTFLRSGVVPSQIGVITPYEG 720
FF V G E S S + Y N EA+ + E+++ +L +IGV+TPY
Sbjct: 1623 GIYRFFNVH-GTEAFSNSKSLY-NVEEASFILLLYERLIQCYLNIDF-EGKIGVVTPYRS 1679
Query: 721 QRAYIVNYMSRN-GALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPR 779
Q + + R G++ ++K +++ +VD FQG+EKD II SCVRS+ GIGFL D R
Sbjct: 1680 QVQQLRSQFQRKYGSI---IFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLR 1736
Query: 780 RLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPK 839
RLNVALTRA+ + I+GN K L ++ ++ L+ K G +L S QF+ K
Sbjct: 1737 RLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAK-----TRGVWRDL--SANQFKNSK 1789
Query: 840 KIYN 843
I N
Sbjct: 1790 SISN 1793
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 176/566 (31%), Positives = 283/566 (50%), Gaps = 65/566 (11%)
Query: 288 SGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKST---SFDRMQ 344
S D+ + G V K+ + ++ + L SQ V + +S ++ K+T +++RM+
Sbjct: 105 SEDSNGEQAECSGVVYKM-SDTQITIALEESQDVIATTFYSYSKLYILKTTNVVTYNRME 163
Query: 345 GAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGL-PELNASQVFAVKSVL 403
M+ + + + I +L+ E + NT + L P LN SQ A+ +
Sbjct: 164 STMRKLSEISSPIQDKIIQYLVN---ERPFIPNTNSFQNIKSFLNPNLNDSQKTAINFAI 220
Query: 404 QRPISLIQGPPGTGKTVTSAAIVYHM-AKQGQGQVLVCAPSNVAVDQLAEKIS--ATGLK 460
+++I GPPGTGKT T ++ + K + ++L+C PSN++VD + E+++
Sbjct: 221 NNDLTIIHGPPGTGKTFTLIELIQQLLIKNPEERILICGPSNISVDTILERLTPLVPNNL 280
Query: 461 VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQ----LKDEQGELSSSDEKK 516
++R+ +R S+ L + + + E+ KL Q LK+ + + +E K
Sbjct: 281 LLRIGHPARLLDSNKRHSLDILSKKNTIVKDISQEIDKLIQENKKLKNYKQRKENWNEIK 340
Query: 517 Y--KALKR---ATEREISQSADVICCTCVGAGDPRLA-------NFR-FRQVLIDESTQA 563
K LK+ T +++ + ++ T G+ L NF+ F ++IDE +QA
Sbjct: 341 LLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVSQA 400
Query: 564 TEPECLIPLVLGAKQ---VVLVGDHCQLGPVIMCK--KAARAGLAQSLFERLVLLGLKPI 618
EP+C IPL+ Q +VL GD+ QL P I + K L +LF+R++ + P
Sbjct: 401 MEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRII--KIFPK 458
Query: 619 R-----LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPW--PVPNR----- 666
R L VQYRM+ + EFPS+S Y G L T+ R ID P P+
Sbjct: 459 RDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLL--IDLPTVDATPSEDDDDT 516
Query: 667 --PMFFYVQMGQE------EISASGTSYLNRTEAANVEKIVTTFLRSGVVP-SQIGVITP 717
P+ +Y G E E + G+ Y N E A V++ + LRS VP + IGVI+P
Sbjct: 517 KIPLIWYDTQGDEFQETADEATILGSKY-NEGEIAIVKEHIEN-LRSFNVPENSIGVISP 574
Query: 718 YEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLND 777
Y Q +++ + L +IE+++VD FQGREKD IILS VRSNE +GFL +
Sbjct: 575 YNAQVSHLKKLIHDELKL-----TDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKE 629
Query: 778 PRRLNVALTRARYGIVILGNPKVLSK 803
RRLNVA+TR R +V++GN +VL +
Sbjct: 630 ERRLNVAMTRPRRQLVVVGNIEVLQR 655
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 203 bits (516), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 175/550 (31%), Positives = 264/550 (48%), Gaps = 90/550 (16%)
Query: 331 VDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPE 390
VD +F RM+ A++ FA ++ YI +LG E + +R + F L
Sbjct: 132 VDLYVNDITFKRMKEALREFARKRDKLA-YI---ILGIEHPEKPLREDIKLEFYDKNL-- 185
Query: 391 LNASQVFAVK-SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
N SQ AVK +VL R + LI GPPGTGKT T ++ K + +VL A SN+A D
Sbjct: 186 -NESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNIAADN 244
Query: 450 LAEKISAT--GLKVVRLCAKSREAVSSPVEHLTLHYQVR-HLDTSEKSEL-HKLQQLKDE 505
+ E + LKVVR+ +R +S + +L Y + H E L K++++K++
Sbjct: 245 ILEYLIKKYPDLKVVRVGHPTR--ISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQ 302
Query: 506 QGELSS---------SDEKKYKALKRA--------------------------------- 523
+ + SDE+ K KR
Sbjct: 303 RDKFLKPSPRWRRGMSDEQILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNLDE 362
Query: 524 -TER---EISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQV 579
TE+ EI ADVI T AG L + F ++IDE +QA EP CLIP+V G K +
Sbjct: 363 ITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVIDEGSQAMEPSCLIPIVKGRK-L 421
Query: 580 VLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNS 637
++ GDH QL P ++ + L ++LFERL+ I L++QYRM+ + EFP+
Sbjct: 422 IMAGDHKQLPPTVLSENEE---LKKTLFERLIKKYPEFSSI-LEIQYRMNEKIMEFPNKM 477
Query: 638 FYEGTLQ-----NGVT----INERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN 688
FY L+ +T + E + +D + P+ F G E SY N
Sbjct: 478 FYNNKLKADESVKNITLLDLVKEEEIDEVDRD-IINEIPVQFINVEGIERKDKESPSYYN 536
Query: 689 RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV 748
EA V +IV ++ +P+ VITPY+ Q V Y+ R L ++ +IEV +V
Sbjct: 537 IEEAEKVLEIVKKLVKYK-IPT--NVITPYDAQ----VRYLRR---LFEEHNIDIEVNTV 586
Query: 749 DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN 808
D FQGRE + I++S VR+ + GFL D RRLNVA+TRA+ ++++GN +L + ++N
Sbjct: 587 DGFQGRENEAIVISFVRT---KNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYN 643
Query: 809 GLLTHYKEHE 818
++ K E
Sbjct: 644 EMIKWAKSVE 653
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 227/460 (49%), Gaps = 51/460 (11%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ AV L Q+ +++I GPPGTGKT T I+ KQG ++L CAPSNVAVD
Sbjct: 191 LDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGL-KILCCAPSNVAVDN 249
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + ++ + +R D + +K
Sbjct: 250 LVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRK-DIDQVFGKNKK 308
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAGD----PRLANFRF 552
Q K E+ + + K LK E I QS ADV+ T GA L F
Sbjct: 309 TQDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHF 368
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V++DE QA E C IPL L A + +L GDH QL P + KAA AGL++SL ERLV
Sbjct: 369 DVVVVDECAQALEASCWIPL-LKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVE 427
Query: 613 L-GLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQN-------------GVTINERQSSGI 657
G +R L VQYRMH +++ + S + Y G L GV E S
Sbjct: 428 KHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETS--- 484
Query: 658 DFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITP 717
P + + +++ +E+ + G N E V + + +GV I VI P
Sbjct: 485 -VPLLLIDTAGCGLLELDEEDSQSKG----NPGEVRLVTLHIQALVDAGVHAGDIAVIAP 539
Query: 718 YEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLND 777
Y Q + +S + E+E+ SVD FQGREK+ +IL+ VRSN +GFL +
Sbjct: 540 YNLQVDLLRQSLSNK-------HPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAE 592
Query: 778 PRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 817
RR+NVA+TRAR + ++ + + ++ L+ ++ EH
Sbjct: 593 DRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEH 632
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 138/423 (32%), Positives = 225/423 (53%), Gaps = 30/423 (7%)
Query: 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQG------------QVLVCAPSNVAVDQLAEK 453
PI++I G G GK+ A ++ + + ++L+ + +NVAVD++
Sbjct: 470 PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLG 529
Query: 454 ISATGLK-VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512
+ + G + +R+ S ++ P+ +LH + ++ + ELH L + +D
Sbjct: 530 LLSLGFENFIRV--GSVRKIAKPILPYSLHAGSEN-ESEQLKELHALMK-EDLTPTERVY 585
Query: 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPL 572
K + K T R + + V+ TC P + + +F V++DE +Q TEP L+P+
Sbjct: 586 VRKSIEQHKLGTNRTLLKQVRVVGVTCAACPFPCMNDLKFPVVVLDECSQITEPASLLPI 645
Query: 573 V-LGAKQVVLVGDHCQLGPVIMCKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPSL 630
++++LVGD QL P I AA GL Q+LF+RL L+G KPI L+ QYR HP++
Sbjct: 646 ARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAI 705
Query: 631 SEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRT 690
S ++ FY+G L NGVT ER W +P + FY G E+I S+ N
Sbjct: 706 SAIANDLFYKGALMNGVTEIERSPL---LEW-LPT--LCFYNVKGLEQIERDN-SFHNVA 758
Query: 691 EAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDS 750
EA K++ + + SG+ S IGVIT Y+ Q + + +S + K ++V++VD+
Sbjct: 759 EATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDI-KTVQVSTVDA 817
Query: 751 FQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGL 810
FQG EK+ IILSCVR+ + +GF++ +R+NVALTR + ++I+GN L K LW +
Sbjct: 818 FQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRV 874
Query: 811 LTH 813
+ H
Sbjct: 875 IQH 877
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 165/499 (33%), Positives = 241/499 (48%), Gaps = 77/499 (15%)
Query: 387 GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQV--------- 437
G +LN SQ AV+ L++P ++IQGPPGTGKT+ IV+ K Q QV
Sbjct: 2149 GRHKLNPSQNVAVREALEKPFTVIQGPPGTGKTIVGLHIVFWFHKSNQEQVQPGGPPRGE 2208
Query: 438 --------LVCAPSNVAVDQLAE-KISATGLKVVRLCAKSREAVSSPV------------ 476
L C PSN +VD LA + LK +R+ ++ EA PV
Sbjct: 2209 KRLGGPCILYCGPSNKSVDVLAGLLLRRMELKPLRVYSEQAEASEFPVPRVGSRKLLRKS 2268
Query: 477 ----------EHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKY--KALKRAT 524
+TLH+++R SE+ K + ++GEL S ++ + K L A
Sbjct: 2269 PREGRPNQSLRSITLHHRIRQAPNPYSSEI-KAFDTRLQRGELFSREDLVWYKKVLWEAR 2327
Query: 525 EREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVL--GAKQVVLV 582
+ E+ + +VI CTC A L RQ+L+DE+ ATEPE LIPLV A++VVL+
Sbjct: 2328 KFELDRH-EVILCTCSCAASASLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKVVLL 2386
Query: 583 GDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGT 642
GDH QL PV+ ++ GL +SLFER L QYRMH + FPS +FY+
Sbjct: 2387 GDHKQLRPVVKNERLQNLGLDRSLFER---YHEDAHMLDTQYRMHEGICAFPSVAFYKSK 2443
Query: 643 LQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKI---- 698
L+ + R S + +F +VQ G E T N AN+E++
Sbjct: 2444 LKTWQGLR-RPPSVLGHAGKESCPVIFGHVQ-GHERSLLVSTDEGNENSKANLEEVAEVV 2501
Query: 699 -VTTFLRSG--VVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGRE 755
+T L G V P I V+TPY Q + I + ALR++ + V+S+ QG E
Sbjct: 2502 RITKQLTLGRTVEPQDIAVLTPYNAQASEI------SKALRREGIAGVAVSSITKSQGSE 2555
Query: 756 KDYIILSCVR-------------SNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS 802
Y+++S VR S + +GF+ DP ++NVA+TRA+ G+ ++G+ +L
Sbjct: 2556 WRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGDHLLLR 2615
Query: 803 KQPLWNGLLTHYKEHECLV 821
PLW LL + + LV
Sbjct: 2616 CCPLWRSLLDFCEAQQTLV 2634
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 130/497 (26%), Positives = 200/497 (40%), Gaps = 75/497 (15%)
Query: 378 TLPRRFGAPGLPELNASQVFAVKSVL--------QRPISLIQGPPGTGKTVTSAAIVYHM 429
LPR + P L N Q AV + + P LI GP GTGKT T A +
Sbjct: 502 ALPRPWSVPPLRRGNRKQELAVALIAGWGPGDGRRVPPLLIYGPFGTGKTYTLAMASLEV 561
Query: 430 AKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSP-VEHLTLHYQVRHL 488
++ + +VL+C +N A D +R S + P L + Y R L
Sbjct: 562 IRRPETKVLICTHTNSAAD-----------IYIREYFHSHVSGGHPEATPLRVMYTDRPL 610
Query: 489 DTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548
++ L D Q A + T E+++ V+ T A + R+
Sbjct: 611 SQTDPVTLQYCCLTDDRQ------------AFRPPTRAELARH-RVVVTTTSQARELRVP 657
Query: 549 NFRFRQVLIDESTQATEPECLIPLVLGA--KQVVLVGDHCQLGPVIMCKKAARAGLAQSL 606
F +LIDE+ Q E E L PL + ++VL GDH Q+ P + ARA +L
Sbjct: 658 VGFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDHMQVTPRLFSVARARAA-EHTL 716
Query: 607 FERLVLLGLKP---------IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGI 657
RL L + + YR ++ F S FY + G I+ R G
Sbjct: 717 LHRLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRHFY---VAKGNPIHAR---GK 770
Query: 658 DFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAAN-VEKIVTTFLRSGVVPSQIGVIT 716
P P + P+ F G + S S+LN E A VEK+ + PS G
Sbjct: 771 VPPHPR-HYPLMFCHVAGSPDRDMSMASWLNLAEIAQVVEKVQEAY---NTWPSCWG--- 823
Query: 717 PYEGQRAYIVNYMSRNGALRQQLYK----EIEVASVDSFQGREKDYIILSCVRSNEH--- 769
E + +V++ ++ ALRQ+L + ++ V S + GR+ ++LS V + +
Sbjct: 824 GREQRCICVVSHGAQVSALRQELRRRDLGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLS 883
Query: 770 ---QGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK----QPLWNGLLTHYKE-HECLV 821
F D R LN LTRA+ +V++G+ L LW + E H
Sbjct: 884 PGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVALCSFGACGKLWESFIRECVERHSVCP 943
Query: 822 EG-PLNNLKQSMVQFQK 837
EG + ++Q + Q ++
Sbjct: 944 EGLSMEQVEQGVAQRRR 960
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 153/460 (33%), Positives = 225/460 (48%), Gaps = 51/460 (11%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ AV L Q+ +++I GPPGTGKT T I+ KQG +VL CAPSN+AVD
Sbjct: 191 LDPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDN 249
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + ++ + +R D + +K
Sbjct: 250 LVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRR-DIDQVFGKNKK 308
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAGD----PRLANFRF 552
Q K E+ + + K LK E I QS ADV+ T GA L F
Sbjct: 309 TQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYF 368
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V++DE QA E C IPL L A + +L GDH QL P + KAA AGL++SL ERL
Sbjct: 369 DVVVVDECAQALEASCWIPL-LKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAE 427
Query: 613 L-GLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQN-------------GVTINERQSSGI 657
G +R L VQYRMH +++ + S + Y G L GV E S
Sbjct: 428 KHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETS--- 484
Query: 658 DFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITP 717
P + + +++ +E+ + G N E V + + +GV I VI P
Sbjct: 485 -VPLLLIDTAGCGLLELEEEDSQSKG----NPGEVRLVTLHIQALVDAGVQAGDIAVIAP 539
Query: 718 YEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLND 777
Y Q + +S + E+E+ SVD FQGREK+ +IL+ VRSN +GFL +
Sbjct: 540 YNLQVDLLRQSLSNK-------HPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAE 592
Query: 778 PRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 817
RR+NVA+TRAR + ++ + ++ L+ ++ EH
Sbjct: 593 DRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEH 632
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 225/460 (48%), Gaps = 51/460 (11%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ AV L Q+ +++I GPPGTGKT T I+ KQG +VL CAPSN+AVD
Sbjct: 191 LDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDN 249
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + ++ + +R D + +K
Sbjct: 250 LVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRR-DIDQVFGKNKK 308
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAGD----PRLANFRF 552
Q K E+G S + K LK E I QS ADV+ T GA L F
Sbjct: 309 TQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYF 368
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V++DE QA E C IPL L A + +L GDH QL P + +AA AGL++SL ERL
Sbjct: 369 DVVVVDECAQALEASCWIPL-LKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAE 427
Query: 613 L-GLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQN-------------GVTINERQSSGI 657
G +R L VQYRMH ++ + S + Y G + GVT E
Sbjct: 428 KHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETR--- 484
Query: 658 DFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITP 717
P + + +++ +E+ + G N E V + + +GV I VI P
Sbjct: 485 -VPLLLIDTAGCGLLELEEEDSQSKG----NPGEVRLVTLHIQALVDAGVQAGDIAVIAP 539
Query: 718 YEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLND 777
Y Q + +S + E+E+ SVD FQGREK+ ++L+ VRSN +GFL +
Sbjct: 540 YNLQVDLLRQSLSNK-------HPELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAE 592
Query: 778 PRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 817
RR+NVA+TRAR + ++ + ++ L+ ++ EH
Sbjct: 593 DRRINVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEH 632
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 192 bits (489), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 142/426 (33%), Positives = 217/426 (50%), Gaps = 51/426 (11%)
Query: 426 VYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGL----------KVVRLCAKSREAVSS- 474
V + +++ + +VLVCAPSN A+D++ ++ ++GL K+VR+ K+ +V+S
Sbjct: 366 VVNASRKYRLRVLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIGLKAHHSVASV 425
Query: 475 PVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADV 534
++HL + +D K +QG + + A I + A +
Sbjct: 426 SLDHLVAQKRGSAID-------------KPKQGTTGTDIDSIRTA--------ILEEAAI 464
Query: 535 ICCTCVGAGDPRLA--NFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592
+ T +G LA N F V+IDE+ QA EP LIPL KQV LVGD QL +
Sbjct: 465 VFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATV 524
Query: 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINER 652
+ A +G S+FERL G L+ QYRMHP + FPS FYEG L++G I E
Sbjct: 525 ISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDI-EA 583
Query: 653 QSSGIDFPWPVPNRPMFFYVQMGQEEISASGT-SYLNRTEAANV----EKIVTTF--LRS 705
Q++ + FF + G+E T S +N E V ++VT + L+S
Sbjct: 584 QTTRDWHKYRCFGPFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKS 643
Query: 706 GVVPSQIGVITPYEGQ-RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCV 764
SQ+ +I+PY Q + + + G + K +++ +VD FQGREKD I SCV
Sbjct: 644 S---SQLAIISPYNYQVKTFKDRFKEMFGT---EAEKVVDINTVDGFQGREKDVAIFSCV 697
Query: 765 RSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECL--VE 822
R+NE+ IGFL++ RR+NV +TRA+ ++++G+ L PLW L+ ++ L V
Sbjct: 698 RANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATLKSDPLWKNLIESAEQRNRLFKVS 757
Query: 823 GPLNNL 828
PLNN
Sbjct: 758 KPLNNF 763
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 164/530 (30%), Positives = 241/530 (45%), Gaps = 114/530 (21%)
Query: 407 ISLIQGPPGTGKTVTSAAIVYHM---------------AKQGQGQVLVCAPSNVAVDQLA 451
I LI GPPGTGK+ T ++Y + AK Q +VLVCAPSN AVD+L
Sbjct: 1958 ICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELM 2017
Query: 452 EKI----------------SATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSE--- 492
+KI + + +VRL + ++++S V +L QV H E
Sbjct: 2018 KKIILEFKEKCKDKKNPLGNCGDINLVRLGPE--KSINSEVLKFSLDSQVNHRMKKELPS 2075
Query: 493 -KSELHKLQQLKDEQ-GELS-------------------------------SSDEKKYKA 519
+HK ++ D Q ELS +S K+ +
Sbjct: 2076 HVQAMHKRKEFLDYQLDELSRQRALCRGGREIQRQELDENISKVSKERQELASKIKEVQG 2135
Query: 520 LKRATEREISQSADVICCTCVGAGDPRLAN-FR------FRQVLIDESTQATEPECLIPL 572
+ T+ I + +ICCT +G L + FR F V++DE+ Q+ E E L PL
Sbjct: 2136 RPQKTQSIIILESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPL 2195
Query: 573 VLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL-----------GLKPIRLQ 621
+ +++LVGD QL P ++ KA G QS+ R L L ++L
Sbjct: 2196 IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISRLPILQLT 2255
Query: 622 VQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRP-MFFYVQMGQEEIS 680
VQYRMHP + FPSN Y L+ RQ+ I P +P + F V G E
Sbjct: 2256 VQYRMHPDICLFPSNYVYNRNLKTN-----RQTEAIRCSSDWPFQPYLVFDVGDGSER-- 2308
Query: 681 ASGTSYLNRTEAANVEKIVTTF--LRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQ 738
SY+N E V +I+ R V IG+IT Y+ Q+ I ++
Sbjct: 2309 RDNDSYINVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMI----------QKD 2358
Query: 739 LYKEI------EVASVDSFQGREKDYIILSCVRSNEHQG-IGFLNDPRRLNVALTRARYG 791
L KE EV +VD+FQGR+KD +I++CVR+N QG IGFL +RLNV +TRA+Y
Sbjct: 2359 LDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYS 2418
Query: 792 IVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKI 841
+ ILG+ + L + WN L+ ++ +++ N + V+ K K +
Sbjct: 2419 LFILGHLRTLMENQHWNQLIQDAQKRGAIIKTCDKNYRHDAVKILKLKPV 2468
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 159/457 (34%), Positives = 221/457 (48%), Gaps = 68/457 (14%)
Query: 385 APGLPELNASQVFAVKSVLQ---RPISLIQGPPGTGKTVT-SAAIVYHMAKQGQGQVLVC 440
P P LNA Q+ +++ VL P +I GPPGTGKT+T AIV Q +VLVC
Sbjct: 391 VPISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVC 450
Query: 441 APSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQ 500
APSN A D + EK+ L+ VR+ K E + L+ + +S +
Sbjct: 451 APSNSAADHILEKLLC--LEGVRI--KDNE--------------IFRLNAATRS----YE 488
Query: 501 QLKDEQGELSSSDEKKYKA--LKRATEREI----SQSADVICCTCVGAGDPRLANFRFRQ 554
++K E DE +K LK T ++ SA ++ V G F
Sbjct: 489 EIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRG-------HFTH 541
Query: 555 VLIDESTQATEPECLIP---LVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
+L+DE+ QA+EPE +I L L VVL GD QLGPVI + A GL +S ERL
Sbjct: 542 ILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLF 601
Query: 612 LLGLK-------PIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVP 664
+L YR HP + + PS FY+G L + + ++F +P
Sbjct: 602 ECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNF---LP 658
Query: 665 NR--PMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQ-IGVITPYEGQ 721
N+ PM FY G +E + S+ NR E + V + + + V + IGVITPY Q
Sbjct: 659 NKEFPMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQ 718
Query: 722 RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS----NEHQG---IGF 774
I + R E++V SV+ FQG+EK II+S VRS NE +GF
Sbjct: 719 VMKIKEVLDRLDMT------EVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGF 772
Query: 775 LNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLL 811
L++PRR NVA+TRA +VI+GNP ++ K WN LL
Sbjct: 773 LSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLL 809
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 230/459 (50%), Gaps = 49/459 (10%)
Query: 391 LNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
L+ SQ AV L Q+ +++I GPPGTGKT T I+ KQG +VL CAPSN+AVD
Sbjct: 192 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDN 250
Query: 450 LAEKISATGLKVVRLCAKSR----------EAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
L E+++ +++RL +R +AV + + + +R D + +K
Sbjct: 251 LVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRK-DIDQVFVKNKK 309
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQS---ADVICCTCVGAGD----PRLANFRF 552
Q K E+ + + K LK E + +S A+V+ T GA L F
Sbjct: 310 TQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYF 369
Query: 553 RQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
V+IDE QA E C IPL L A++ +L GDH QL P + KAA AGL+ SL ERL
Sbjct: 370 DVVVIDECAQALEASCWIPL-LKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAE 428
Query: 613 -LGLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINE---RQSSGI------DFPW 661
G + +R L VQYRMH ++ + S++ Y G L ++ R G+ P
Sbjct: 429 EYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPL 488
Query: 662 PVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQ 721
+ + ++ +E+ + G N E V + + +GV I V++PY Q
Sbjct: 489 LLVDTAGCGLFELEEEDEQSKG----NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 722 RAYIVNYMSRNGALRQQL---YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDP 778
V+ LRQ L + E+E+ SVD FQGREK+ +ILS VRSN +GFL +
Sbjct: 545 ----VDL------LRQSLVHRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAED 594
Query: 779 RRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 817
RR+NVA+TRAR + ++ + + ++ L+ ++ +H
Sbjct: 595 RRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQH 633
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 159/527 (30%), Positives = 245/527 (46%), Gaps = 108/527 (20%)
Query: 407 ISLIQGPPGTGKTVTSAAIVYHM---------------AKQGQGQVLVCAPSNVAVDQLA 451
I LI GPPGTGK+ T ++Y + AK Q +VLVCAPSN AVD+L
Sbjct: 1934 ICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELM 1993
Query: 452 EKI----------------SATGLKVVRLCAKSREAVSSPVEHLTLHYQVRH-----LDT 490
+KI + + +VRL + +++++ V +L QV H L +
Sbjct: 1994 KKIILEFKEKCKDKKNPLGNCGDINLVRLGPE--KSINTEVLKFSLDSQVNHRMKKDLPS 2051
Query: 491 SEKSELHKLQQLKDEQGELS-------------------------------SSDEKKYKA 519
+ L + + L + ELS +S K+ +
Sbjct: 2052 HIQEMLRRKEILDAQLDELSRQRALCRGGREMQRQELDEHIAIVSKERQELASKIKEVQG 2111
Query: 520 LKRATEREISQSADVICCTCVGAGDPRLAN-FR------FRQVLIDESTQATEPECLIPL 572
+ + I + VICCT +G L + FR F V++DE+ Q+ E E L PL
Sbjct: 2112 RPQRAQNTIILESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPL 2171
Query: 573 VLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV----------LLGLKPI-RLQ 621
+ +++LVGD QL P ++ KA G QS+ R ++G P+ +L
Sbjct: 2172 IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLT 2231
Query: 622 VQYRMHPSLSEFPSNSFYEGTLQ-NGVTINERQSSGIDFPWPVPNRP-MFFYVQMGQEEI 679
+QYRMHP + FPSN Y L+ N +T + R SS WP +P + F V G E
Sbjct: 2232 IQYRMHPDICLFPSNYVYNKNLKTNRLTESIRCSS----EWPF--QPYLVFDVGDGSER- 2284
Query: 680 SASGTSYLNRTEAANVEKIVTTF--LRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQ 737
SY+N E V +I+ R + IG+IT Y+ Q+ I L +
Sbjct: 2285 -RDNDSYINVQEIKLVMEIIKLIKEKRKDISFRNIGIITHYKAQKTMI------QKDLEK 2337
Query: 738 QLYKE--IEVASVDSFQGREKDYIILSCVRSNEHQG-IGFLNDPRRLNVALTRARYGIVI 794
+ K+ EV +VD+FQGR+KD II++CVR++ QG IGFL +RLNV +TRA+Y + I
Sbjct: 2338 EFDKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFI 2397
Query: 795 LGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKI 841
LG+ + L + W L+ ++ +++ N + ++ K K +
Sbjct: 2398 LGHLRTLMENQHWYELIQDAQKRGAIIKTSDPNYRHDAMKILKLKPV 2444
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 138/461 (29%), Positives = 223/461 (48%), Gaps = 65/461 (14%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T A+V ++ G VL+ + ++ A
Sbjct: 623 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICALVRILSACG-FSVLLTSYTHSA 681
Query: 447 VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQ 506
VD + K++ + +RL + +H ++ E L + L
Sbjct: 682 VDNILLKLAKFKIGFLRLGQSHK-----------VHPDIQKFTEEEMCRLRSIASL---- 726
Query: 507 GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP 566
A E+ S V+ TC+G P + F ++DE++Q ++P
Sbjct: 727 ----------------AHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQP 770
Query: 567 ECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626
CL PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L +QYRM
Sbjct: 771 ICLGPLFF-SRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQYRM 829
Query: 627 HPSLSEFPSNSFYEGTLQNG--------VTINERQSSGIDF-------PWPV----PNRP 667
+ + + YEG L+ G +T+ + ++F PW P+ P
Sbjct: 830 NRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADYSDNPWLAGVFEPDNP 889
Query: 668 MFFYVQM---GQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAY 724
+ F E+I G S N TEA + + +TF+++G PS IG+I PY Q
Sbjct: 890 VCFLNTDKVPAPEQIENGGVS--NVTEARLIVFLTSTFIKAGCSPSDIGIIAPYRQQLRT 947
Query: 725 IVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIG-FLNDPRRLNV 783
I + ++R+ +EV +VD +QGR+K I++S VRSNE +G L D RRLNV
Sbjct: 948 ITDLLARSSV------GMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNV 1001
Query: 784 ALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGP 824
A+TRA++ +++LG+ L + P L H + + P
Sbjct: 1002 AITRAKHKLILLGSVSSLKRFPPLEKLFDHLNAEQLISNLP 1042
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 229/464 (49%), Gaps = 70/464 (15%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ A
Sbjct: 623 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACG-FSVLLTSYTHSA 681
Query: 447 VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELH-KLQQLKDE 505
VD + K++ + +RL + ++H +QQ ++
Sbjct: 682 VDNILLKLAKFKIGFLRL--------------------------GQIQKVHPAIQQFTEQ 715
Query: 506 QGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATE 565
E+ S K K+L A E+ S ++ TC+G P + F ++DE++Q ++
Sbjct: 716 --EICRS--KSIKSL--ALLEELYNSQLIVATTCMGINHPIFSRKIFDFCIVDEASQISQ 769
Query: 566 PECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYR 625
P CL PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L VQYR
Sbjct: 770 PICLGPLFF-SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTVQYR 828
Query: 626 MHPSLSEFPSNSFYEGTLQNG------VTINERQSSGI-----------DFPWPV----P 664
M+ + + YEG L+ G IN R + D PW + P
Sbjct: 829 MNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEP 888
Query: 665 NRPMFFYVQM---GQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQ 721
N P+ F E++ G S N TEA + + + F+++G PS IG+I PY Q
Sbjct: 889 NNPVCFLNTDKVPAPEQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQ 946
Query: 722 RAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIG-FLNDPRR 780
I + ++R+ + +EV +VD +QGR+K +++S VRSN+ +G L D RR
Sbjct: 947 LKIINDLLARSIGM-------VEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRR 999
Query: 781 LNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGP 824
LNVA+TRA++ +++LG L+ P LL H + +++ P
Sbjct: 1000 LNVAITRAKHKLILLGCVPSLNCYPPLEKLLNHLNSEKLIIDLP 1043
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 227/463 (49%), Gaps = 67/463 (14%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T +V + G VL+ + ++ A
Sbjct: 623 LKGLNKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVRILYACG-FSVLLTSYTHSA 681
Query: 447 VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQ 506
VD + K++ + +RL Q H D +Q+ +E
Sbjct: 682 VDNILLKLAKFKIGFLRLG----------------QIQKVHPD---------IQKFTEE- 715
Query: 507 GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP 566
E+ S K K+L A E+ S ++ TC+G P + F ++DE++Q ++P
Sbjct: 716 -EICRS--KSIKSL--ALLEELYNSQLIVATTCMGINHPIFSRKTFDFCIVDEASQISQP 770
Query: 567 ECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626
CL PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM
Sbjct: 771 VCLGPLFF-SRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLTVQYRM 829
Query: 627 HPSLSEFPSNSFYEGTLQNG------VTIN-----------ERQSSGIDFPWPV----PN 665
+ + + YEG L+ G IN E + + PW + PN
Sbjct: 830 NSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYADYSENPWLIAAFEPN 889
Query: 666 RPMFFYVQM---GQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQR 722
P+ F E++ G S N EA V + + F+++G PS IG+I PY Q
Sbjct: 890 NPVCFLNTHKVPAPEQVEKGGVS--NIMEAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQL 947
Query: 723 AYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIG-FLNDPRRL 781
I + ++++ +EV +VD +QGR+K +++S VRSNE +G L D RRL
Sbjct: 948 KVISDLLAQSSV------GMVEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGELLKDWRRL 1001
Query: 782 NVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGP 824
NVA+TRA++ +++LG LS+ P LL H + +++ P
Sbjct: 1002 NVAITRAKHKLILLGCVPSLSRYPPLRKLLNHLNSEKLIIDLP 1044
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 223/466 (47%), Gaps = 73/466 (15%)
Query: 388 LPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446
L LN Q A+K VL + +LI G PGTGKT T A+V ++ G VL+ + ++ A
Sbjct: 624 LKGLNKPQRQAMKRVLLSKDYTLIVGMPGTGKTTTICALVRILSACG-FSVLLTSYTHSA 682
Query: 447 VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQ 506
VD + K++ + +RL + +H ++ E + L
Sbjct: 683 VDNILLKLAKFKVGFLRLGQSHK-----------VHPDIQKFTEEEICRSRSIASL---- 727
Query: 507 GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP 566
A E+ S ++ TC+G P + F ++DE++Q ++P
Sbjct: 728 ----------------AHLEELYNSHPIVATTCMGINHPIFSRKTFDFCIVDEASQISQP 771
Query: 567 ECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626
CL PL +++ VLVGDH QL P+++ ++A G+++SLF+RL ++L VQYRM
Sbjct: 772 VCLGPLFF-SRRFVLVGDHQQLPPLVVNREARALGMSESLFKRLERNESAVVQLTVQYRM 830
Query: 627 HPSLSEFPSNSFYEGTLQNGVTINERQSSGI--------------------DFPWPV--- 663
+ + + Y G L+ G ++R ++ + D PW
Sbjct: 831 NRKIMSLSNKLTYAGKLECG---SDRVANAVLALPNLKDARLSLQLYADYSDSPWLAGVL 887
Query: 664 -PNRPMFFYVQM---GQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYE 719
P+ P+ F E++ G S N TEA + + +TF+++G PS IGVI PY
Sbjct: 888 EPDNPVCFLNTDKVPAPEQVENGGVS--NVTEARLIVFLTSTFIKAGCSPSDIGVIAPYR 945
Query: 720 GQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIG-FLNDP 778
Q I + ++R+ +EV +VD +QGR+K I++S VRSNE +G L D
Sbjct: 946 QQLRIISDLLARSSV------GMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKDW 999
Query: 779 RRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGP 824
RRLNVALTRA++ +++LG+ L + P L H + +++ P
Sbjct: 1000 RRLNVALTRAKHKLILLGSVSSLKRFPPLGTLFDHLNAEQLILDLP 1045
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 220/477 (46%), Gaps = 82/477 (17%)
Query: 390 ELNASQVFAVKSVLQ---RPI-SLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A+K ++ RP +I GPPGTGKTVT + + K + +L CAPSN
Sbjct: 498 ESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSN 557
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLK 503
D L +++ + RL A SR+ P ++
Sbjct: 558 SGADLLCQRLRVHLPSSIYRLLAPSRDIHLVP------------------EDIKPCCNWD 599
Query: 504 DEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANF---RFRQVLIDES 560
++G+ +KK Q V+ T + A A F F + IDE+
Sbjct: 600 AKKGDFVFPSKKKL------------QEYRVLITTLITASRLVSAQFPIDHFTHIFIDEA 647
Query: 561 TQATEPECLIPL--VLGAK-------QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
A EPE L+ + ++ K Q+VL GD QLGPV+ C + GL SL ERL+
Sbjct: 648 GHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLL 707
Query: 612 LL---------GLKP---IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659
G P +L YR HP++ + P+ +Y+G LQ + +R+
Sbjct: 708 TFNALYKKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQACADVVDRERFCRWE 767
Query: 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL-------RSGVVPSQI 712
P + P+ F+ MG++E + S+ N EAA V + L ++ + P +
Sbjct: 768 GLPRQDFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSV 827
Query: 713 GVITPYEGQRAYIVNYMSRNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSN 767
GVI+PY Q I +++ L +QL K+++V SV+ FQG+E+ I++S VRS+
Sbjct: 828 GVISPYRKQVEKIRYCITK---LDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSS 884
Query: 768 E-------HQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 817
+ +GFL +P+R NVA+TRA+ ++++GNP +L P W L KE+
Sbjct: 885 QSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKEN 941
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 193/411 (46%), Gaps = 51/411 (12%)
Query: 436 QVLVCAPSNVAVDQLAEKISATGL----------KVVRLCAKSREAVSSPVEHLTLHYQV 485
++L+CAPSN AVD++ ++ GL +VR+ S S VE ++L Y V
Sbjct: 463 RILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVGPGSH----SDVESVSLDYMV 518
Query: 486 RHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREIS------QSADVICCTC 539
R +L S+S R+T+ S AD++ T
Sbjct: 519 RCR--------QQLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIRTLVLDEADIVATTL 570
Query: 540 VGAGDPRLANFR--FRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKA 597
+G L F V+IDE+ QA E LIP+ G K+VVLVGD QL I+ A
Sbjct: 571 SFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQHGCKKVVLVGDPKQLPATIISPLA 630
Query: 598 ARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGI 657
+ QSLF+RL P L QYRMH + FPS FY+ L +G I R +
Sbjct: 631 IKYKYDQSLFQRLQEKN-SPHMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRATHYH 689
Query: 658 DFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTE---AANVEKIVTTFLRSGVVPSQIGV 714
P+ P+ FY E G S N E A + ++ T S+IG+
Sbjct: 690 SNPF---FGPLVFYDLSWSTETKPGGGSVFNEHECKMAMYLFQLFTKVYPDEDFASRIGI 746
Query: 715 ITPYEGQRAYIVNYMSRNGALRQQL--YKEIEVASVDSFQGREKDYIILSCVRS--NEHQ 770
I+PY Q ALR+ Y I + +VD FQGRE++ II SCVR+ E
Sbjct: 747 ISPYRQQVL----------ALREIFKNYPGISIDTVDGFQGREREIIIFSCVRAPVEEGA 796
Query: 771 GIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLV 821
GIGFL+D RR+NVALTR R ++ILGN K LS WN L+ H + ++ L+
Sbjct: 797 GIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQHTQNNQQLI 847
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 392 NASQVFAVKSVLQ-RPISLIQGPPGTGKT 419
N SQ+ A+ S L+ I+LIQGPPGTGKT
Sbjct: 336 NDSQLNALTSALEGNAITLIQGPPGTGKT 364
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 139/475 (29%), Positives = 215/475 (45%), Gaps = 78/475 (16%)
Query: 390 ELNASQVFAVKSVLQ---RPI-SLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A++ ++ RP +I GPPGTGKTVT + + K + +L CAPSN
Sbjct: 498 ESNPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSN 557
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLK 503
D L +++ + RL A SR+ P ++
Sbjct: 558 SGADLLCQRLRVHLPSSIYRLLAPSRDIRMVP------------------EDIKPCCNWD 599
Query: 504 DEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANF---RFRQVLIDES 560
++GE +KK Q V+ T + AG A F F + IDE+
Sbjct: 600 AKKGEYVFPAKKKL------------QEYRVLITTLITAGRLVSAQFPIDHFTHIFIDEA 647
Query: 561 TQATEPECLIPL--VLGAK-------QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
EPE L+ + ++ K Q+VL GD QLGPV+ + GL SL ERL+
Sbjct: 648 GHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLL 707
Query: 612 LL---------GLKP---IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659
G P +L YR HP++ + P+ +YEG LQ + +R+
Sbjct: 708 TYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCRWA 767
Query: 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL-------RSGVVPSQI 712
P P+ F+ MG++E + S+ N EAA V + L ++ + P +
Sbjct: 768 GLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSV 827
Query: 713 GVITPYEGQRA---YIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE- 768
GVI+PY Q Y + + R + K+++V SV+ FQG+E+ I++S VRS++
Sbjct: 828 GVISPYRKQVEKIRYCITKLDRELRGLDDI-KDLKVGSVEEFQGQERSVILISTVRSSQS 886
Query: 769 ------HQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 817
+GFL +P+R NVA+TRA+ ++I+GNP +L P W L KE+
Sbjct: 887 FVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPDWKVFLEFCKEN 941
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 150/483 (31%), Positives = 222/483 (45%), Gaps = 73/483 (15%)
Query: 372 VQMVRNTLP---RRFGAPGLPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVY 427
VQ + + LP + A L LN Q A+K VL + +LI G PGTGKT T +V
Sbjct: 605 VQHLSSILPPDAKDIVASILRGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVR 664
Query: 428 HMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRH 487
+ G VL+ + ++ AVD + K+ +QV
Sbjct: 665 ILYACG-FSVLLTSYTHSAVDNILLKLKK--------------------------FQVGF 697
Query: 488 LDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATE-REISQSADVICCTCVGAGDPR 546
L L + Q+L + E S + K K++K + E+ S V+ TC+G P
Sbjct: 698 L------RLGRTQKLHPDVQEFSEEEICKAKSIKSLSALEELYNSQPVVATTCMGVNHPI 751
Query: 547 LANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSL 606
RF ++DE++Q ++P CL PL A + VLVGDH QL P++ +A G+++SL
Sbjct: 752 FTRRRFDFCIVDEASQISQPICLGPLFF-ADRFVLVGDHQQLPPLVKSAEARELGMSESL 810
Query: 607 FERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQ-------NGVT----------- 648
F+RL ++L VQYRM+ + + YEG L+ N V
Sbjct: 811 FKRLERNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLE 870
Query: 649 --INERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS----YLNRTEAANVEKIVTTF 702
E Q S P+ P+ F + E+I A T N EA V + +
Sbjct: 871 LEFRESQESMWIKDVLEPSNPVCF---LNTEKIPALETEEKGGISNWIEAKLVFHLTKLY 927
Query: 703 LRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILS 762
L++G PS IG+I PY Q I NY + A +EV +VD +QGR+K II+S
Sbjct: 928 LKAGCRPSDIGIIAPYRQQLKMISNYFNSLSA------SAVEVNTVDKYQGRDKSVIIVS 981
Query: 763 CVRSNEHQGIG-FLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLV 821
VRSN +G L D RRLNVALTRA++ +++LG L++ L+ + K +
Sbjct: 982 FVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLICNLKTENQIY 1041
Query: 822 EGP 824
+ P
Sbjct: 1042 DLP 1044
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 139/475 (29%), Positives = 215/475 (45%), Gaps = 78/475 (16%)
Query: 390 ELNASQVFAVKSVLQ---RPI-SLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSN 444
E N Q+ A+K +++ RP +I GPPGTGKTVT + + K + +L CAPSN
Sbjct: 499 ESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSN 558
Query: 445 VAVDQLAEKISA-TGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLK 503
D L +++ + RL A SR+ P + +K
Sbjct: 559 SGADLLCQRLRVHLPSSIYRLLAPSRDIRMVP------------------------EDIK 594
Query: 504 DEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANF---RFRQVLIDES 560
+ E Y A K Q V+ T + A A F F + IDE+
Sbjct: 595 TCCNWDAKKGEYVYPAKKHL------QQYRVLITTLITASRLVSAQFPIDHFTHIFIDEA 648
Query: 561 TQATEPECLIPL--VLGAK-------QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV 611
EPE L+ + ++ K Q+VL GD QLGPV+ A + GL SL ERL+
Sbjct: 649 GHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLL 708
Query: 612 LL---------GLKP---IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659
G P +L YR HP++ + P+ +Y+G LQ + +R+
Sbjct: 709 AYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDRERFCRWE 768
Query: 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL-------RSGVVPSQI 712
P P+ F+ MG++E + S+ N EAA V + L ++ + P +
Sbjct: 769 GLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNV 828
Query: 713 GVITPYEGQRA---YIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNE- 768
GVI+PY Q Y + + R + K+++V SV+ FQG+E+ I++S VRS++
Sbjct: 829 GVISPYRKQVEKIRYCITKLDRELRGLDDI-KDLKVGSVEEFQGQERSVILISTVRSSQS 887
Query: 769 ------HQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 817
+GFL +P+R NVA+TRA+ ++++GNP +L P W L KE+
Sbjct: 888 FVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKEN 942
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 222/459 (48%), Gaps = 58/459 (12%)
Query: 372 VQMVRNTLP---RRFGAPGLPELNASQVFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVY 427
+Q + + LP + A L LN Q A+K VL R +LI G PGTGKT T A+V
Sbjct: 573 IQHLSSVLPPEAKEAVASILKGLNKPQKQAMKQVLLSRDYTLIVGMPGTGKTTTICALVR 632
Query: 428 HMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRH 487
++ G VL+ + ++ AVD + K++ + +RL + +H +R
Sbjct: 633 ILSACG-FSVLLTSFTHTAVDNILLKLAKFKVGFLRLGRAQK-----------VHPDIRK 680
Query: 488 LDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATE-REISQSADVICCTCVGAGDPR 546
E + K++K T+ E+ S V+ C+G P
Sbjct: 681 FTEEEIC---------------------RSKSIKSVTDLEELYNSQPVVATACMGINHPI 719
Query: 547 LANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSL 606
+F ++DE++Q ++P CL PL +K+ VLVGDH QL P++ +A G+++SL
Sbjct: 720 FVQKQFDFCIVDEASQISQPICLGPL-FCSKRFVLVGDHQQLPPLVQNSEARDLGMSESL 778
Query: 607 FERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNR 666
F+RL ++L VQYRM+ + + YEG L+ G +E+ S+ +PN
Sbjct: 779 FKRLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECG---SEKVSNATA---NLPN- 831
Query: 667 PMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIV 726
++M + E + + ++L + ++G PS IG+I+PY Q I
Sbjct: 832 -----LKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCRPSDIGIISPYRHQLKVIT 886
Query: 727 NYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIG-FLNDPRRLNVAL 785
+ M+R R +EV ++D +QGR+K II+S VR++ + +G L D RRLNVA+
Sbjct: 887 DLMARLKENR------VEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAI 940
Query: 786 TRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGP 824
TRA++ ++++G L + P LL H + + P
Sbjct: 941 TRAKHKLIMVGCVPSLRRYPPLEKLLCHLQSEAMIFNLP 979
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 210/466 (45%), Gaps = 85/466 (18%)
Query: 389 PELNASQVFAVKSVLQ---RPISLIQ-GPPGTGKTVT--SAAIVYHMAKQGQGQVLVCAP 442
P LN +Q AVK +L RP+ I GPPGTGKTVT A + H A ++LVCAP
Sbjct: 743 PVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALP-DSRILVCAP 801
Query: 443 SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQL 502
SN A D + ++ + KV++ R + E + +
Sbjct: 802 SNSAADLVCLRLHES--KVLQPATMVRVNATCRFEEIVI--------------------- 838
Query: 503 KDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR---FRQVLIDE 559
D E +KA + +I TC +G R F V +DE
Sbjct: 839 -DAVKPYCRDGEDIWKASR----------FRIIITTCSSSGLFYQIGVRVGHFTHVFVDE 887
Query: 560 STQATEPECLIPLVLGAK---QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV----- 611
+ QA+EPECLIPL L + Q+VL GD QLGPVI + A GL S ERL+
Sbjct: 888 AGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAY 947
Query: 612 -----LLG-------LKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659
G L +L YR H +L PS FY L+ V + + +
Sbjct: 948 QRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELE--VCADPTVVTSL-L 1004
Query: 660 PW---PVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEK---IVTTFLRSGVVPSQIG 713
W P P+ F+ G E S+ N EA V + ++ + S V S IG
Sbjct: 1005 GWEKLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIG 1064
Query: 714 VITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQG-- 771
VITPY Q I + RN L +I+V SV+ FQG+E II+S VRSNE +
Sbjct: 1065 VITPYRKQVEKI-RILLRNVDL-----MDIKVGSVEEFQGQEYLVIIISTVRSNEDRFED 1118
Query: 772 ----IGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTH 813
+GFL++ +R NVA+TR + +++LGNP VL + P + LL +
Sbjct: 1119 DRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1164
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/486 (29%), Positives = 221/486 (45%), Gaps = 102/486 (20%)
Query: 409 LIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT----GLKVVR 463
L+ GPPGTGKTVT + + K G ++L CAPSN A DQL EK+ + + R
Sbjct: 547 LVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKLITSQHVDARNIYR 606
Query: 464 LCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL----SSSDEKKYKA 519
+ A SR P L+ + +GE D YK
Sbjct: 607 IYASSRNPKEIP---------------------KVLENNSNVEGENIIFPCKEDLMPYK- 644
Query: 520 LKRATEREISQSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VL 574
++ CT V AG F F + +DE+ A EPE +I + +L
Sbjct: 645 --------------IVVCTLVTAGRLVSGGFPVGHFSHIFVDEAGHAVEPEIVISVAGLL 690
Query: 575 GAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV------------LLGLKPIRL 620
A+ Q+VL GD QLGP++ A + GL SL ERL+ +L
Sbjct: 691 NAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTKL 750
Query: 621 QVQYRMHPSLSEFPSNSFYEGTLQN-GVTINERQSSGIDFPWP-VPNR--PMFFYVQMGQ 676
YR HPS+ + P+ FY+ L+ I+ RQ W +P R P+ F+ +G+
Sbjct: 751 LQNYRSHPSILKVPNELFYDNELKACADEISSRQYCT----WEHLPKRGFPVIFHGVVGK 806
Query: 677 EEISASGTSYLNRTEAANV----EKIVTTFLRSGVV---PSQIGVITPYEGQRAYIVNYM 729
+E ++ S+ N +E + +K++ T + G+ P IG+I PY Q I +
Sbjct: 807 DERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKISPKDIGIIAPYRKQVEKIRQAI 866
Query: 730 SRNGALRQQL-YKEIEVASVDSFQGREKDYIILSCVRSNEHQ-------GIGFLNDPRRL 781
+ L+ +E++V SV+ FQG+E+ II+S VRS++ IGFL + +R
Sbjct: 867 KIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSKEHIILDDKFNIGFLKNEKRF 926
Query: 782 NVALTRARYGIVILGNPKVLSKQPLWNGLL--------------THYKEHECLVEGPLN- 826
NVA+TRA+ ++++GNP +L +W + TH +E + + E L+
Sbjct: 927 NVAVTRAKALLIMVGNPIILRTDEIWGRFMNYCIQERGYTGYDITHLEETDVIAERLLSL 986
Query: 827 NLKQSM 832
N++Q +
Sbjct: 987 NIRQEI 992
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 211/470 (44%), Gaps = 93/470 (19%)
Query: 389 PELNASQVFAVKSVLQ---RPISLIQ-GPPGTGKTVT--SAAIVYHMAKQGQGQVLVCAP 442
P LN +Q AV+ +L RP+ I GPPGTGKTVT A + H A ++LVCAP
Sbjct: 745 PVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYA-LPDSRILVCAP 803
Query: 443 SNVAVDQLAEKISATGLKVVRLCAKSREA-VSSPVEHLTLHYQVRHLDTSEKSELHKLQQ 501
SN A D + C + E+ V P + ++ R +T
Sbjct: 804 SNSAADLV--------------CLRLHESKVPKPAAMVRVNATCRFEET----------- 838
Query: 502 LKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR---FRQVLID 558
+ D E ++A + +I TC AG R F V +D
Sbjct: 839 IIDAIKPYCRDGEDIWRASR----------FRIIITTCSSAGLFYQIGVRVGYFTHVFVD 888
Query: 559 ESTQATEPECLIPLVLGAK---QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV---- 611
E+ QA+EPECLIPL L + Q+VL GD QLGPVI + A GL S+ ERL+
Sbjct: 889 EAGQASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPA 948
Query: 612 ----------------LLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSS 655
LL K ++ YR H +L PS FY L+ V + + +
Sbjct: 949 YLRDENAFGACGAYNPLLVTKLVK---NYRSHSALLALPSRLFYHRELE--VCADPKVVT 1003
Query: 656 GIDFPW---PVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRS---GVVP 709
+ W P P+ F+ G E S+ + EA V + RS V
Sbjct: 1004 SL-LGWEKLPRKGFPLIFHGVRGNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSS 1062
Query: 710 SQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH 769
IGVITPY Q I + RN L +I+V SV+ FQG+E I++S VRSNE
Sbjct: 1063 KDIGVITPYRKQVEKI-KILLRNVDL-----TDIKVGSVEEFQGQEYLVIVISTVRSNED 1116
Query: 770 QG------IGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTH 813
+ +GFL++ +R NVA+TR + ++ILGNP VL + P + LL +
Sbjct: 1117 RFEDDRYFLGFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLEY 1166
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 223/483 (46%), Gaps = 89/483 (18%)
Query: 390 ELNASQVFAVKSV---LQRPI-SLIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSN 444
E N Q AVK + + RP LI GPPGTGKTVT AI + ++L CAPSN
Sbjct: 490 EANEEQCQAVKHIVTGMSRPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPSN 549
Query: 445 VAVDQLAEKI--SATGLKVVRLCAKSREAVSSPVEHLTLHYQVR---HLDTSEKSELHKL 499
A D L +++ + + R+ A S P + VR + D SEK ++
Sbjct: 550 SAADLLCQRLLTNIAPRYIYRIMASSANYKDVPAD-------VRPCCNWDDSEKCYVYPS 602
Query: 500 QQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANF---RFRQVL 556
++L K Y+ ++ T V AG ANF F V
Sbjct: 603 KKLL-----------KPYR---------------ILITTLVTAGRLVSANFPPGYFSHVF 636
Query: 557 IDESTQATEPECLIPLV-----------LGAKQVVLVGDHCQLGPVIMCKKAARAGLAQS 605
IDE A EPE ++ + Q+VL GD QLGPV AA+ GL S
Sbjct: 637 IDECGHAVEPESVVAIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTS 696
Query: 606 LFERLVL---------LGLKP---IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQ 653
L ERL+L G P +L YR H ++ + P+ FY+ L+ +E
Sbjct: 697 LLERLMLHNALYAKSDEGYNPQFVTKLLWNYRSHKAILKVPNELFYDSELK-AYEGSEPD 755
Query: 654 SSGIDFPWP-VPNR--PMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRS----- 705
W +PNR P+ F+ G++E A S+ N E V + + L+S
Sbjct: 756 VRNFYCTWEELPNRGVPIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRG 815
Query: 706 --GVVPSQIGVITPYEGQRAYI-VNYMSRNGALRQQ-LYKEIEVASVDSFQGREKDYIIL 761
+ P +IG+I+PY Q I + S++ LR +++V SV+ FQG+E+ I++
Sbjct: 816 CPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILI 875
Query: 762 SCVRS-------NEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHY 814
S VRS ++ +GFL +P+RLNVALTRA+ ++++GN VLSK P W+ L +
Sbjct: 876 STVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYC 935
Query: 815 KEH 817
++
Sbjct: 936 RDE 938
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 203/437 (46%), Gaps = 69/437 (15%)
Query: 409 LIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467
L+ GPPGTGKTVT + + K +L CAPSN A DQL EK+ +
Sbjct: 552 LVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEKLITS---------- 601
Query: 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATERE 527
EH+ H ++ L S +++ + LKD + DE+ + +E
Sbjct: 602 ---------EHVDAH-KIYRLYASSRNQKDIPKILKDN----CNVDEE----MIDFPCKE 643
Query: 528 ISQSADVICCTCVGAGDPRLANF---RFRQVLIDESTQATEPECLIPL--VLGAK--QVV 580
S ++ CT V AG F F +DE+ A E E +I + +L A+ Q+V
Sbjct: 644 DLMSYKILICTLVTAGRLVTGGFSEDHFTHNFVDEAGHAVESETIISVAGLLNAEKGQLV 703
Query: 581 LVGDHCQLGPVIMCKKAARAGLAQSLFERLV----LLGLKPI--------RLQVQYRMHP 628
L GD QLGP++ A GL SL ERL+ L + +L + YR HP
Sbjct: 704 LAGDPKQLGPILRSPLAINHGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLIMNYRSHP 763
Query: 629 SLSEFPSNSFYEGTLQNGVTINERQSSGIDFPW---PVPNRPMFFYVQMGQEEISASGTS 685
+ E P+ FY+G L+ + SS W P P+ F+ G++E ++ S
Sbjct: 764 YILEVPNRLFYDGELK---ACADEISSNQYCMWEHLPSKGFPVIFHGVPGKDERESNSPS 820
Query: 686 YLNRTE----AANVEKIVTTFLRSGV---VPSQIGVITPYEGQRAYIVNYMSRNGALRQQ 738
+ N E ++K++ T + G+ P IG+I PY Q I + + +
Sbjct: 821 FFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIAPYRKQVEKIKRAIDADKDFQDY 880
Query: 739 L-YKEIEVASVDSFQGREKDYIILSCVRS-------NEHQGIGFLNDPRRLNVALTRARY 790
+ ++V SV+ FQG+E+ I++S VRS +E IGFL + +R NVA+TRA+
Sbjct: 881 MGIDNLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDETFNIGFLKNEKRFNVAVTRAKS 940
Query: 791 GIVILGNPKVLSKQPLW 807
++++GNP +L W
Sbjct: 941 LLIMVGNPMILRTDESW 957
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 139 bits (351), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 169/345 (48%), Gaps = 25/345 (7%)
Query: 485 VRHLDTSEKSELHKL--QQLKDEQGELSSSDEKKYKA-------LKRATEREISQSADVI 535
V LD S + +L++L Q + + S E++Y+ L+ + I + A+V+
Sbjct: 915 VWQLDLSSRWQLYRLWLQMYQADTRRRILSYERQYRTWAERMAELRLQEDLHILKDAEVV 974
Query: 536 CCTCVGAGDPR--LANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIM 593
T GA R L R V+++E+ + E + L + ++L+GDH QL P
Sbjct: 975 GMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSAN 1034
Query: 594 CKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINER 652
A+ L SLFERLV + + +RL Q+RM P ++ + Y+ + +
Sbjct: 1035 VYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYE 1094
Query: 653 QSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQI 712
Q G+ + +FF E+ G S+ N+ EA V ++ L +PSQI
Sbjct: 1095 QIKGV-------SSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQI 1147
Query: 713 GVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGI 772
++T Y GQ + M + + I+V VD +QG E D I+LS VRSN+ +
Sbjct: 1148 TILTTYTGQLFCLRKLMP------VKTFAGIKVHVVDKYQGEENDIILLSLVRSNQEGKV 1201
Query: 773 GFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 817
GFL P R+ VAL+RA+ G+ +GN ++L+K PLW+ ++ +E+
Sbjct: 1202 GFLQIPNRICVALSRAKKGMYCIGNMQMLAKVPLWSRIIHTLREN 1246
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK-----QGQGQ---VLVCA 441
+L+ SQ+ A++ L + +++IQGPPGTGKT IV + Q Q +LV
Sbjct: 590 KLDDSQMEALQFALTKELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQTFPILVVC 649
Query: 442 PSNVAVDQLAEKI 454
+N A+DQ E I
Sbjct: 650 YTNHALDQFLEGI 662
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 167/345 (48%), Gaps = 25/345 (7%)
Query: 485 VRHLDTSEKSELHKL--QQLKDEQGELSSSDEKKYKA-------LKRATEREISQSADVI 535
V LD S + +L++L Q + + S E++Y+ L+ + I + A V+
Sbjct: 922 VWQLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQVV 981
Query: 536 CCTCVGAGDPR--LANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIM 593
T GA R L R V+++E+ + E + L + ++L+GDH QL P
Sbjct: 982 GMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSAN 1041
Query: 594 CKKAARA-GLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINER 652
A+ L SLFERLV + + +RL Q+RM P ++ + Y+ + +
Sbjct: 1042 VYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHPSVLKYE 1101
Query: 653 QSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQI 712
+ G+ + +FF E+ G S+ N+ EA V ++ FL +PSQI
Sbjct: 1102 KIKGV-------SSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQI 1154
Query: 713 GVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGI 772
++T Y GQ + M + + + V VD +QG E D I+LS VRSN+ +
Sbjct: 1155 TILTTYTGQLFCLRKLMP------AKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKV 1208
Query: 773 GFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 817
GFL R+ VAL+RA+ G+ +GN ++L+K PLW+ ++ +E+
Sbjct: 1209 GFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLREN 1253
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAI---------VYHMAKQGQGQVLVC 440
+L+ SQ+ A++ L R +++IQGPPGTGKT I V+ ++ Q ++VC
Sbjct: 597 KLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVC 656
Query: 441 APSNVAVDQLAEKI-SATGLKVVRLCAKSREAV 472
+N A+DQ E I + +VR+ +S +
Sbjct: 657 Y-TNHALDQFLEGIYNCQKTSIVRVGGRSNSEI 688
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 138/498 (27%), Positives = 230/498 (46%), Gaps = 76/498 (15%)
Query: 373 QMVRNTLPRRFGAPGL--PE----LNASQVFAVKSV-LQRPISLIQGPPGTGKTVTSAAI 425
M+ P +F L PE LN Q+ A+K SLI G PGTGKT T +++
Sbjct: 908 DMIIRLKPPKFCNSALIDPEFLKCLNEDQITALKKCHAAEHYSLILGMPGTGKTTTISSL 967
Query: 426 VYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQV 485
+ + + + +L + +++AVD + K+ +VRL + + +H V
Sbjct: 968 IRSLLAKKKKILLT-SFTHLAVDNILIKLKGCDSTIVRLGSPHK-----------IHPLV 1015
Query: 486 RHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP 545
+ +E + L LK + ++ C+ +G
Sbjct: 1016 KEFCLTEGTTFDDLASLK-----------------------HFYEDPQIVACSSLGVYHS 1052
Query: 546 RLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQS 605
+F +IDE++Q P CL PL L A++ VLVGDH QL P++ + ++ GL+ S
Sbjct: 1053 IFNKRKFDYCIIDEASQIPLPICLGPLQL-AEKFVLVGDHYQLPPLVKNSRTSKDGLSLS 1111
Query: 606 LFERLVLLGLKPIR-LQVQYRMHPSLSEFPSNSFYEGTLQNGV-TINERQ---------- 653
LF+ L + + L++QYRM+ ++ S Y G L G TI++++
Sbjct: 1112 LFKLLSEKHPEAVTTLRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLSD 1171
Query: 654 ---SSGIDFPWPV----PNRPMFFYVQ---MGQEEISASGTSYLNRTEAANVEKIVTTFL 703
S W P+ + F+ +G E S + N TEA +E+ V++FL
Sbjct: 1172 GLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVE--SKTNNILENHTEAFLIEQAVSSFL 1229
Query: 704 RSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSC 763
GV S IG+I+ Y+ Q V +S+N + + EIE+ +VD +QGR+KD I++S
Sbjct: 1230 ERGVKQSSIGIISIYKSQ----VELLSKN----LKSFTEIEINTVDRYQGRDKDIILISF 1281
Query: 764 VRSNEHQGIG-FLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVE 822
VRSN +G L D RLNVAL+RA+ ++ G+ LS + + LL ++++ +
Sbjct: 1282 VRSNSKNLVGELLRDWHRLNVALSRAKVKCIMFGSLSTLSSSNIVSHLLKLLEKNKWIFT 1341
Query: 823 GPLNNLKQSMVQFQKPKK 840
N++ + P K
Sbjct: 1342 LNENDIATKFDENSSPIK 1359
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 127/475 (26%), Positives = 207/475 (43%), Gaps = 81/475 (17%)
Query: 391 LNASQVFAVKSVLQRPIS----LIQGPPGTGKTVTSAAIVYHMAKQGQG-QVLVCAPSNV 445
LN+ Q AV ++L+ ++ GPPG+GKT+T + + + G ++LV PSN
Sbjct: 784 LNSIQKRAVFNILRGEAENIPYVLFGPPGSGKTMTLIETLLQLVRNLPGARILVGTPSNS 843
Query: 446 AVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKS----ELHKLQQ 501
+ D + +++ S+ + L + QV EK E+
Sbjct: 844 SADLVTKRL-----------IDSKALLQGDFIRLVSYNQV------EKDLIPPEIMSYCA 886
Query: 502 LKDEQGELSSSDEKKY---KALKRATEREISQSADVICCTCVGAGDPRLANF---RFRQV 555
D G + S ++K LK + + + + TC G+ F F V
Sbjct: 887 TSD-VGAVGSCEDKMMVTESGLKLRCQAKFIGTHRITISTCTTLGNFLQLGFPAGHFTHV 945
Query: 556 LIDESTQATEPECLIPLVLGAK---QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVL 612
L DE+ Q TEPE ++P+V+ K QVVL GD QL ++ + A++ G + S ERL+
Sbjct: 946 LFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLE 1005
Query: 613 L--------------GLKPI---RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSS 655
G P+ +L YR PS+ S FY+ L ++ + + S
Sbjct: 1006 RSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRES 1065
Query: 656 GI------------DFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL 703
+ D P FFY +G+ + S+ N E V +
Sbjct: 1066 RLLSKLRCVFESEKDIPQA---HGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALY 1122
Query: 704 RSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSC 763
R+ V QIG+ITPY+ Q + + + + + SV+ FQG+E+D I++S
Sbjct: 1123 RANVTADQIGIITPYQKQVKMLRSMFIGTDVVMPK------IGSVEEFQGQERDIILIST 1176
Query: 764 VRSNEHQ-------GIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLL 811
VRS+E +GF+ +RLNVA++RAR ++I GNP +L+ W L+
Sbjct: 1177 VRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDECWRQLI 1231
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 152/578 (26%), Positives = 233/578 (40%), Gaps = 90/578 (15%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443
P LNA Q A+ ++ + P LI GP GTGKT T A V H+ KQ + +VL+C S
Sbjct: 633 PRLNAKQKEAILAITTPLSINLPPVLIIGPYGTGKTFTLAQAVKHILKQPESRVLICTHS 692
Query: 444 NVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLK 503
N A D L + EA + L ++++ R + T +H L Q
Sbjct: 693 NSAAD----------LYIKDYLHPYVEAGNPHARPLRVYFRNRWVKT-----VHPLVQ-- 735
Query: 504 DEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQA 563
Q L S ++ R + E + V T L F +L+DE+ QA
Sbjct: 736 --QYCLISGAHFTFQMPTR-QDVERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQA 792
Query: 564 TEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV--LLGLKPIR 619
E E ++PL L K +VVL GDH QL P + + A L SL +RL P R
Sbjct: 793 MECETIMPLALAVKSTRVVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCR 852
Query: 620 LQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQE 677
+ + YR H ++ + S+ FYEG L + +Q DF P+ F+ G++
Sbjct: 853 ILLCENYRSHEAIINYTSDLFYEGKL----MASGKQPPHKDF------YPLTFFTARGED 902
Query: 678 EISASGTSYLNRTEAANVEKIVTTFLRSGVV------PSQIGVITPYEGQRAYIVNYMSR 731
+ T+Y N E + + V + V IGV++PY Q I
Sbjct: 903 VQEKNSTAYYNNAEVFEIVERVEEMRKKWPVSWGKLEEGSIGVVSPYADQVFRI------ 956
Query: 732 NGALRQQLYKEIEVASVDSFQGREKDYIILSCVR---------------------SNEHQ 770
LR++ E+ V V + QG++ + LS VR S E
Sbjct: 957 RAELRKKRMSEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDL 1016
Query: 771 GIGFLNDPRRLNVALTRARYGIVILGNPKVLSK----QPLWNGLLTHYKEHECLVEGPLN 826
GFL++ + LN A+TRA+ + ++G+P L + W ++ E+ L
Sbjct: 1017 DYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFISICHENHSLHGITFE 1076
Query: 827 NLKQSMVQFQKPKKIYNDRRLFFGAGPGIVPNDISTSNPNADRRGSRARGYMPPGPPN-- 884
+K + + KK Y + P +P + + +P ++G + PP
Sbjct: 1077 QIKIQLEALEL-KKTY----VLNPLAPEFIPRALRSQHP--PQQGPGKHQHSPPKAKGQL 1129
Query: 885 GTHKPGLHPAGFPMPRVPLPPFQGGPPSQPYAIPSRGA 922
H P GF P + G P Q + P GA
Sbjct: 1130 ANHTEPFPPEGFVQPNAAV---LMGNPIQAFTPPGAGA 1164
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 121/443 (27%), Positives = 193/443 (43%), Gaps = 73/443 (16%)
Query: 391 LNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449
LN +Q A+ V++ +LI G PGTGKT A I+ + +G+ +VL+ + ++ AVD
Sbjct: 1052 LNLNQKEAIDKVMRAEDYALILGMPGTGKTTVIAEIIKILVSEGK-RVLLTSYTHSAVDN 1110
Query: 450 LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL 509
+ K+ T + ++RL K + V + +Y S KS L ++
Sbjct: 1111 ILIKLRNTNISIMRLGMKHK--VHPDTQKYVPNY------ASVKSYNDYLSKI------- 1155
Query: 510 SSSDEKKYKALKRATEREISQSADVICCTCVGAGDP--RLANFRFRQVLIDESTQATEPE 567
S V+ TC+G D L F V++DE++Q + P
Sbjct: 1156 --------------------NSTSVVATTCLGINDILFTLNEKDFDYVILDEASQISMPV 1195
Query: 568 CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPI-RLQVQYRM 626
L PL G + ++VGDH QL P++ A GL +SLF+ + + L +QYRM
Sbjct: 1196 ALGPLRYGNR-FIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPESVAELTLQYRM 1254
Query: 627 HPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPV---------------------PN 665
+ + Y+ L+ G NE + ++ P P P
Sbjct: 1255 CGDIVTLSNFLIYDNKLKCGN--NEVFAQSLELPMPEALSRYRNESANSKQWLEDILEPT 1312
Query: 666 RPMFFYVQMGQEEI--SASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRA 723
R + F +I + + N EA + V L SGV IGV+T Y Q
Sbjct: 1313 RKVVFLNYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLR 1372
Query: 724 YIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEH-QGIGFLNDPRRLN 782
+ ++N +Y +E+ + D FQGR+K II+S VR N G L + RR+N
Sbjct: 1373 LLKKIFNKN------VYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVN 1426
Query: 783 VALTRARYGIVILGNPKVLSKQP 805
VA+TRA+ ++I+G+ + P
Sbjct: 1427 VAMTRAKSKLIIIGSKSTIGSVP 1449
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 124/451 (27%), Positives = 191/451 (42%), Gaps = 74/451 (16%)
Query: 389 PELNASQVFAVKSV-----LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443
P LNA Q AV ++ +Q P LI GP GTGKT T A H+ +Q + ++L+C S
Sbjct: 640 PRLNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAAKHILQQQETRILICTHS 699
Query: 444 NVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLK 503
N A D L + EA + L ++++ R + T +H+ +
Sbjct: 700 NSAAD----------LYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHPV-VHQYCLIS 748
Query: 504 DEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQA 563
Q +K LK ++ +C + G F VL+DE+ QA
Sbjct: 749 STQSTFQMP--QKEDILKHRVVVVTLSTSQYLCQLDLEPG-------FFTHVLLDEAAQA 799
Query: 564 TEPECLIPLVLGAK--QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLV--LLGLKPIR 619
E E ++PL L K ++VL GDH QL P + + A L SL +RL P R
Sbjct: 800 MECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCR 859
Query: 620 LQV--QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQE 677
+ + YR H ++ + S FYEG L + +Q + DF P+ F+ G++
Sbjct: 860 ILLCENYRSHEAIINYTSELFYEGKL----MASGKQPAHKDF------YPLTFFTARGED 909
Query: 678 EISASGTSYLNRTEAANVEKIVTTFLRSGVVP------SQIGVITPYEGQRAYIVNYMSR 731
+ T++ N E V + V R V IGV+TPY Q I
Sbjct: 910 VQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRI------ 963
Query: 732 NGALRQQLYKEIEVASVDSFQGREKDYIILSCVR---------------------SNEHQ 770
LR++ ++ V V + QG++ + LS VR S E
Sbjct: 964 RAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDL 1023
Query: 771 GIGFLNDPRRLNVALTRARYGIVILGNPKVL 801
GFL++ + LN A+TRA+ + ++G+P L
Sbjct: 1024 DYGFLSNYKLLNTAITRAQSLVAVVGDPVAL 1054
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 141/287 (49%), Gaps = 28/287 (9%)
Query: 532 ADVICCTCVGAGDPR--LANFRFRQVLIDESTQATEPECLIPLVL-GAKQVVLVGDHCQL 588
A+VI T G R L + I+E+ E +IP V +Q+VL+GDH QL
Sbjct: 683 ANVIGMTTTGLNKYRDILERINPKICFIEEAADVLEGP-IIPAVFPSLEQLVLIGDHKQL 741
Query: 589 GPVIMCKKAARA----GLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQ 644
P C A L+ S+FERLV ++ RL +Q RMHP + S S YE
Sbjct: 742 RP--GCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRLVS-SVYEDLSD 798
Query: 645 NGVTINERQSSGIDFPWP-VPNRPMF--FYVQMGQEEISASGTSYLNRTEAANVEKIVTT 701
+T WP +P F++ + E + S +N EA + +
Sbjct: 799 YEITKY----------WPSIPGMGEIRRFFLTHSRIEDNDGFASKINLFEAQMLVQFAVY 848
Query: 702 FLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIIL 761
+ +GV P +I +T Y Q+ I +S + + I+VA+VD +QG E D ++L
Sbjct: 849 LINNGVEPQKITCLTFYAAQKDLIERLLSESLNREKHF---IKVATVDGYQGEENDVVLL 905
Query: 762 SCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK-QPLW 807
S VR+N+ +GFL+ P R+ V+L+RAR G+ I GN +++++ PLW
Sbjct: 906 SLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESNPLW 952
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 383 FGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQV---LV 439
FG PG L++SQ+ A +S+L + +S+IQGPPGTGK+ + + + + V LV
Sbjct: 365 FG-PGEYILDSSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLENTHSHVLPILV 423
Query: 440 CAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKL 499
+N AVDQ+ ++ G V+RL +++++ + V T+ + +H S K+ +++
Sbjct: 424 ACQTNHAVDQILIRLLHQGASVMRLGSRTKDPEIAAV---TIFQKAKHTKHSFKAAYNEI 480
Query: 500 QQLK 503
+ K
Sbjct: 481 RHKK 484
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,524,441
Number of Sequences: 539616
Number of extensions: 19749391
Number of successful extensions: 86541
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 792
Number of HSP's that attempted gapping in prelim test: 77741
Number of HSP's gapped (non-prelim): 6335
length of query: 1066
length of database: 191,569,459
effective HSP length: 128
effective length of query: 938
effective length of database: 122,498,611
effective search space: 114903697118
effective search space used: 114903697118
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)