Query 001501
Match_columns 1066
No_of_seqs 513 out of 2600
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 16:37:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001501.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_802-806//hhsearch_pdb/001501hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wjy_A Regulator of nonsense t 1.0 1 1 1196.3 58.6 694 138-836 2-800 (800)
2 2xzl_A ATP-dependent helicase 1.0 1 1 1184.0 56.4 693 136-835 5-801 (802)
3 2gk6_A Regulator of nonsense t 1.0 1 1 811.7 48.6 604 229-836 19-624 (624)
4 4b3f_X DNA-binding protein smu 1.0 1 1 737.7 46.2 559 247-823 45-637 (646)
5 3e1s_A Exodeoxyribonuclease V, 1.0 1 1 290.1 12.8 291 389-802 188-545 (574)
6 3lfu_A DNA helicase II; SF1 he 1.0 1 1 287.7 15.1 313 389-731 8-369 (647)
7 1pjr_A PCRA; DNA repair, DNA r 1.0 1 1 280.2 8.0 310 389-730 10-372 (724)
8 1w36_D RECD, exodeoxyribonucle 1.0 1 1 268.1 12.4 349 392-800 151-585 (608)
9 1uaa_A REP helicase, protein ( 1.0 1 1 265.3 14.5 304 390-727 2-360 (673)
10 3upu_A ATP-dependent DNA helic 1.0 1 1 252.9 13.5 305 386-795 21-459 (459)
No 1
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=1.00 E-value=1 Score=1196.28 Aligned_cols=694 Identities=73% Similarity=1.248 Sum_probs=632.9
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 66882223555877997227719786582552799999753243556451554054068999964310001135653210
Q 001501 138 ADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFL 217 (1066)
Q Consensus 138 ~~~~~~~c~ycg~~~~~~~~~c~~~~c~kwfcn~~~~~~~shiv~hlv~~~~~~~~lh~~~~~~~~~lecy~~~~~nvf~ 217 (1066)
+++|+|||+|||||+|+|||+|++ |+||||||||+|++||||+||||||||||+||+|+|||||+||||+||+||||+
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~--~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~ 79 (800)
T 2wjy_A 2 KDLPIHACSYCGIHDPACVVYCNT--SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFL 79 (800)
T ss_dssp CCCCTTSCTTTCCCCGGGEEEETT--TTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTT
T ss_pred CCCCCHHCCCCCCCCCCEEEECCC--CCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCEEE
T ss_conf 988700052359999870878078--787612699998613899999871576476278888887357873268873365
Q ss_pred CCCEECCCCCEEEEEECHHHHH----------------------------------------------------------
Q ss_conf 1420014776389960415667----------------------------------------------------------
Q 001501 218 LGFISAKTESVVVLLCREPCLN---------------------------------------------------------- 239 (1066)
Q Consensus 218 lgf~~~~~~~~~~~~cr~~~~~---------------------------------------------------------- 239 (1066)
|||||+|+|+|||||||+||++
T Consensus 80 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 159 (800)
T 2wjy_A 80 LGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENP 159 (800)
T ss_dssp CEEEC-----CCEECCTTTTSSTTC----------CEESBCSSSBCTTTSCCCCHHHHHHSCCCCHHHHHHHHHHHTTCT
T ss_pred EECEECCCCCEEEEEECCCCCCCCHHHCCCCCHHHCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 30246266866999945821163402114777775661143563418660799979976514799999999898740275
Q ss_pred ---------------------------------------------HHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf ---------------------------------------------75310352117999980578808999984589887
Q 001501 240 ---------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNE 274 (1066)
Q Consensus 240 ---------------------------------------------~~~e~~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~ 274 (1066)
.++|++.+.+++++|++++++|.+++|.++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (800)
T 2wjy_A 160 SATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSD 239 (800)
T ss_dssp TCCTTC--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCEEEECTTCCEEEEECCCBCCC-
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf 76634443014544546634445999999999999999999761434455422662898772689806899995365578
Q ss_pred CCCCCCCEEEEEECCCCCCCCCEEEEEEEEECC--CCEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 788999979999579999985159999999236--538999922489997335887149996054539999999999997
Q 001501 275 LRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAV 352 (1066)
Q Consensus 275 ~~l~~GD~v~l~~~~~~~~~~~~~~G~V~~i~~--~~~v~i~l~~~~~~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~ 352 (1066)
.+|..||.|.+++.+. ....|...|+|+++.+ .++|.+++......|.+....|.++++|++++|+||+.||++++.
T Consensus 240 ~~l~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~aL~~~~~ 318 (800)
T 2wjy_A 240 MRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAV 318 (800)
T ss_dssp -CCCTTCEEEEEECSS-SSCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCC-CCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 8789999899997888-788734589999976788888999982688884003777049996068759999999999987
Q ss_pred HHCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31010345664205981234432047997779999999999999999997329918998789982768999999999992
Q 001501 353 DETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1066)
Q Consensus 353 ~e~~~s~~i~~~llg~~~~~~~~~~~lp~~~~~~~~~~LN~sQ~~AV~~aL~~~lsLIqGPPGTGKTtTia~iI~~L~k~ 432 (1066)
++..++.++++.++++...+..++..+|+.|..+....||++|++||..++..++++|+||||||||+|+++++.++++.
T Consensus 319 ~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~ 398 (800)
T 2wjy_A 319 DETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ 398 (800)
T ss_dssp CTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred HHCCHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 40011689999851888871332245720036434667799999999874259917998699999899999999999974
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99809999083999999999999529909983221100137950133488897402611378898977746532248904
Q 001501 433 GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512 (1066)
Q Consensus 433 ~~~kILV~ApSN~AvD~L~eRL~~~gl~ivRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~ 512 (1066)
...+||+|||||+|||+|.+++...+++++|+++.+++.+..++...++|..++.... ..+++++.+++++.+.++..
T Consensus 399 ~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~--~~~l~~l~~~~~~~~~~~~~ 476 (800)
T 2wjy_A 399 GNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSA 476 (800)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTT--CHHHHHHHHHHTTTSCCCHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCHH
T ss_conf 8981999869689999999999872754176233214331361556539999972764--99999999998753346867
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCEE
Q ss_conf 79999999999999997215520011223588531379978999977899990565531002586699927866879602
Q 001501 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592 (1066)
Q Consensus 513 ~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQa~Epe~LIpL~~~~kklILVGD~~QLpPvv 592 (1066)
++++|+.+.+..+.++++.++||++||.++++..+....||+||||||+|++++++++++...++++|||||++||||++
T Consensus 477 ~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QLpPvv 556 (800)
T 2wjy_A 477 DEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV 556 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCTTTTTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEE
T ss_conf 89999999987777543369899974045287245458989899989778776999999984688599961521379845
Q ss_pred ECHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 01778861301789999998299656756631269888886522223584456543112246999988999999959998
Q 001501 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672 (1066)
Q Consensus 593 ~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~pi~f~~ 672 (1066)
.+..+...++..|+|+|+...+..+++|++||||||+|++|+|.+||+|+|.++.....+...+..++|+....|++|++
T Consensus 557 ~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~ 636 (800)
T 2wjy_A 557 MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV 636 (800)
T ss_dssp CCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEE
T ss_pred CCHHHHHCCCCHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEE
T ss_conf 55556555743589999986799954844532888178775189752981546775133101356665668998889998
Q ss_pred ECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCC
Q ss_conf 06950220567876799999999999999997799999399990351589999999996141114215981995112689
Q 001501 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752 (1066)
Q Consensus 673 ~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gi~~~dIGIITPY~~Qv~~I~~~L~~~~~~~~~~~~~V~V~TVdsfQ 752 (1066)
+.|.++....+.|+.|..||..|+.++..+++.++.+.+|||||||++|+..|++.+...+.+.......|+|+|||+||
T Consensus 637 ~~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQ 716 (800)
T 2wjy_A 637 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQ 716 (800)
T ss_dssp CCCCCEECSSBSCEECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGT
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCC
T ss_conf 68851204788764689999999999999997599805599990658999999999986476541236866984211268
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEECCCCCCHHHHH
Q ss_conf 85113899982215997876788887830630012114429996321003791399999998853806127875020201
Q 001501 753 GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSM 832 (1066)
Q Consensus 753 G~E~DvVILS~VRSn~~~~iGFL~d~RRLNVALTRAK~~LiIVGn~~~Ls~~~~W~~ll~~~~~~~~lv~g~l~~l~~s~ 832 (1066)
|+|+|+||+|+||++...++||+.++||||||+||||++|+||||..+|+++++|+.|++|++++++++++++++|++++
T Consensus 717 G~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~~ 796 (800)
T 2wjy_A 717 GREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESL 796 (800)
T ss_dssp TCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTSSHHHHHHHHHHHHTTCEEESCGGGCEECC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHCCCEEECCHHHHHHHC
T ss_conf 87578799980578876663311671343130876631199998779954278999999999987999968888865540
Q ss_pred HHCC
Q ss_conf 1014
Q 001501 833 VQFQ 836 (1066)
Q Consensus 833 ~~~~ 836 (1066)
++++
T Consensus 797 ~~~~ 800 (800)
T 2wjy_A 797 MQFS 800 (800)
T ss_dssp CCC-
T ss_pred CCCC
T ss_conf 0579
No 2
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1184.02 Aligned_cols=693 Identities=60% Similarity=1.028 Sum_probs=622.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCC
Q ss_conf 77668822235558779972277197865825527999997532435564515540540689999643100011356532
Q 001501 136 GKADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNV 215 (1066)
Q Consensus 136 ~~~~~~~~~c~ycg~~~~~~~~~c~~~~c~kwfcn~~~~~~~shiv~hlv~~~~~~~~lh~~~~~~~~~lecy~~~~~nv 215 (1066)
+..++|+|||+|||||+|+|||||++ |+||||||||+|++||||+||||||||||+||||+|||||+||||+||+|||
T Consensus 5 ~~~~~~~~~c~yc~~~~~~~~~~c~~--~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~ 82 (802)
T 2xzl_A 5 MSPSASDNSCAYCGIDSAKCVIKCNS--CKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNV 82 (802)
T ss_dssp -------CCCTTTCCCCTTTEEEETT--TCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCT
T ss_pred CCCCCCHHHCCCCCCCCCCEEEEECC--CCCEECCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCE
T ss_conf 45658701072349999750778077--7867017999987339999998715871651678888984568623799741
Q ss_pred CCCCCEECCCCCEEEEEECHHHHH--------------------------------------------------------
Q ss_conf 101420014776389960415667--------------------------------------------------------
Q 001501 216 FLLGFISAKTESVVVLLCREPCLN-------------------------------------------------------- 239 (1066)
Q Consensus 216 f~lgf~~~~~~~~~~~~cr~~~~~-------------------------------------------------------- 239 (1066)
|+|||||||+|+|||||||+||++
T Consensus 83 f~lg~~~~~~~~~~~~~cr~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~e~~w~~~~~ 162 (802)
T 2xzl_A 83 FLLGFVSAKSEAVVVLLCRIPCAQTKNANWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKD 162 (802)
T ss_dssp TTEEEEC------CEEEETTTTTTCC---CCGGGCEESBCSSSBCTTTSCCCCTTGGGGSCCCCHHHHHHHHHHHTTCCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCCHHHCCCCHHHCCEEECCCCCCHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 35421460578669999678644432248767547311114654355406999799543237999999999998742868
Q ss_pred --------------------------------------------HHHHCCCCCCEEEEEEECCCCEEEEEEECCC-CCCC
Q ss_conf --------------------------------------------7531035211799998057880899998458-9887
Q 001501 240 --------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNE 274 (1066)
Q Consensus 240 --------------------------------------------~~~e~~~~~~~~~~~~~~l~~k~~~~~~~~~-~~~~ 274 (1066)
.++|++.+.+++++|+.+++++.++.|.++. .+.+
T Consensus 163 ~~l~d~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (802)
T 2xzl_A 163 ATINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTLSTFESNE 242 (802)
T ss_dssp CCC------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBCEEEEECTTSCEEEEEC--------
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 75666533466556466665569999999999899999997622346676444826754406798389999806645578
Q ss_pred CCCCCCCEEEEEECCCCCCCCCEEEEEEEEECC--CCEEEEEECCCC-CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 788999979999579999985159999999236--538999922489-99733588714999605453999999999999
Q 001501 275 LRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRASQ-GVPVDINHGFSVDFVWKSTSFDRMQGAMKTFA 351 (1066)
Q Consensus 275 ~~l~~GD~v~l~~~~~~~~~~~~~~G~V~~i~~--~~~v~i~l~~~~-~~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~ 351 (1066)
.+|..||.|.+++.+. ....|...|+|+++.+ .++|.+++.... ..|.+....|.++++|++++|+||+.||.+++
T Consensus 243 ~~~~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~AL~~~~ 321 (802)
T 2xzl_A 243 LKVAIGDEMILWYSGM-QHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFA 321 (802)
T ss_dssp -CCCTTCEEEEEECSS-SSSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCC-CCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9899999899997898-889515789999987888878999996788899600277748999756861899999999987
Q ss_pred HHHCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 73101034566420598123443204799777999999999999999999732991899878998276899999999999
Q 001501 352 VDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK 431 (1066)
Q Consensus 352 ~~e~~~s~~i~~~llg~~~~~~~~~~~lp~~~~~~~~~~LN~sQ~~AV~~aL~~~lsLIqGPPGTGKTtTia~iI~~L~k 431 (1066)
.++..++.++++.++++...+..+...+|+.|..+.+..||++|++||..++..++++|+||||||||+|+++++.++++
T Consensus 322 ~~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~ 401 (802)
T 2xzl_A 322 IDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSK 401 (802)
T ss_dssp HCTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 51334036788876077656543465685111543455689999999999863997799878997789999999999986
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 29980999908399999999999952990998322110013795013348889740261137889897774653224890
Q 001501 432 QGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSS 511 (1066)
Q Consensus 432 ~~~~kILV~ApSN~AvD~L~eRL~~~gl~ivRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~ 511 (1066)
....+||+|||||+|||+|.+||.+.+++++|+++++++.+...+...+++..++..... ++.++..++.+.+.++.
T Consensus 402 ~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~---~l~~l~~~~~~~~~ls~ 478 (802)
T 2xzl_A 402 IHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKG---ELKNLLKLKDEVGELSA 478 (802)
T ss_dssp HHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCT---HHHHHHHHHHHHSCCCH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHCCCCH
T ss_conf 799729998485799999999998627507862223222103156564299999851689---99999999886445788
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCE
Q ss_conf 47999999999999999721552001122358853137997899997789999056553100258669992786687960
Q 001501 512 SDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPV 591 (1066)
Q Consensus 512 ~~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQa~Epe~LIpL~~~~kklILVGD~~QLpPv 591 (1066)
.+.+.|+.+.+..+..+++.++||++|+.+++...+.. +||+||||||+|++++++++++...++++||||||+||+|+
T Consensus 479 ~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~L~~-~fd~viIDEA~q~~e~~~li~l~~~~~~lilvGD~~QL~pv 557 (802)
T 2xzl_A 479 SDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDT-KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPV 557 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCTTCCS-CCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECHHHCCHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCE
T ss_conf 89988899999999987523999983323317277755-69999998850324478999998579989998076113871
Q ss_pred EECHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 20177886130178999999829965675663126988888652222358445654311224699998899999995999
Q 001501 592 IMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFY 671 (1066)
Q Consensus 592 v~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~pi~f~ 671 (1066)
+.+..+...++..|+|+|+...+..+++|++||||||+|++|+|.+||+|+|.++.....+......++|+....|++|+
T Consensus 558 v~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~ 637 (802)
T 2xzl_A 558 ILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFW 637 (802)
T ss_dssp CCCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEE
T ss_pred ECHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 41054656587435999998669983475200488868999889875288465687534311455567777899987999
Q ss_pred EECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCC
Q ss_conf 80695022056787679999999999999999779999939999035158999999999614111421598199511268
Q 001501 672 VQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSF 751 (1066)
Q Consensus 672 ~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gi~~~dIGIITPY~~Qv~~I~~~L~~~~~~~~~~~~~V~V~TVdsf 751 (1066)
++.|.++....+.|+.|..||..|++++..|++.|+.+.+|||||||++|+..|++.|...+.+.......|+|+|||+|
T Consensus 638 ~~~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~f 717 (802)
T 2xzl_A 638 ANYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAF 717 (802)
T ss_dssp ECCCCCEECTTSSSEECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHH
T ss_pred ECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHC
T ss_conf 86895021378988689999999999999999759983428998366999999999998725655001366598235434
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEECCCCCCHHHH
Q ss_conf 98511389998221599787678888783063001211442999632100379139999999885380612787502020
Q 001501 752 QGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQS 831 (1066)
Q Consensus 752 QG~E~DvVILS~VRSn~~~~iGFL~d~RRLNVALTRAK~~LiIVGn~~~Ls~~~~W~~ll~~~~~~~~lv~g~l~~l~~s 831 (1066)
||+|+|+||+|+||++....+||+.++||||||+||||++|+||||..+|+++++|++|++|++++++++++++++|+++
T Consensus 718 QG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~ 797 (802)
T 2xzl_A 718 QGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLC 797 (802)
T ss_dssp TTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTTSHHHHHHHHHHHHHTCEEEEETTEEEEC
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHCEEEEEECHHHHCCCHHHHHHHHHHHHCCCEECCCHHHHHHH
T ss_conf 88726779998236888777341258451112574652839999887996117699999999998599624888998662
Q ss_pred HHHC
Q ss_conf 1101
Q 001501 832 MVQF 835 (1066)
Q Consensus 832 ~~~~ 835 (1066)
++++
T Consensus 798 ~~~~ 801 (802)
T 2xzl_A 798 TVQL 801 (802)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 4377
No 3
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=1.00 E-value=1 Score=811.66 Aligned_cols=604 Identities=71% Similarity=1.194 Sum_probs=539.1
Q ss_pred EEEEECHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECC-
Q ss_conf 8996041566775310352117999980578808999984589887788999979999579999985159999999236-
Q 001501 229 VVLLCREPCLNMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA- 307 (1066)
Q Consensus 229 ~~~~cr~~~~~~~~e~~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~l~~GD~v~l~~~~~~~~~~~~~~G~V~~i~~- 307 (1066)
++.++++.+. .++|++.+.+++++|+++++++.+++|.++..+.+.+|..||.|.+++.++ ....|.+.|+|+++.+
T Consensus 19 ll~~E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~l~~~~~-~~~~~~~~g~v~~~~~~ 96 (624)
T 2gk6_A 19 LVKLEADYDK-KLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDN 96 (624)
T ss_dssp HHHHHHHHHH-HHHHHTCEEEECEEEEECTTSCEEEEEECC-------CCTTCEEEEEECSS-SSCCCEEEEEEEECSCS
T ss_pred HHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCC-CCCCCEEEEEEEEECCC
T ss_conf 9999999978-887654045825876634788169999706433579689999899997888-88874789999996477
Q ss_pred -CCEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC
Q ss_conf -5389999224899973358871499960545399999999999973101034566420598123443204799777999
Q 001501 308 -QEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAP 386 (1066)
Q Consensus 308 -~~~v~i~l~~~~~~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~~e~~~s~~i~~~llg~~~~~~~~~~~lp~~~~~~ 386 (1066)
.++|.|+++.....|.+....|.++++|++++|+||+.||++++.++..++.++++.++++...+..++..+|+.|..+
T Consensus 97 ~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 176 (624)
T 2gk6_A 97 YGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQ 176 (624)
T ss_dssp SCSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCT
T ss_pred CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88789999826888863356655899995772699999999998760455127789986188876421245675212544
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 99999999999999973299189987899827689999999999929980999908399999999999952990998322
Q 001501 387 GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCA 466 (1066)
Q Consensus 387 ~~~~LN~sQ~~AV~~aL~~~lsLIqGPPGTGKTtTia~iI~~L~k~~~~kILV~ApSN~AvD~L~eRL~~~gl~ivRl~~ 466 (1066)
.+..||++|++||..++.+++++|+||||||||+|+++++.++++....+||+|||||.|||+|.+++.+.+++++|+++
T Consensus 177 ~~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~ 256 (624)
T 2gk6_A 177 GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 256 (624)
T ss_dssp TSCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 56789999999999996289769989999878999999999999748980999927189999999999861975896053
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 11001379501334888974026113788989777465322489047999999999999999721552001122358853
Q 001501 467 KSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPR 546 (1066)
Q Consensus 467 ~sre~i~~~~~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~ 546 (1066)
++++.+..++..++++..++.... ..++.++..++++.+.++..+++.|+.+.+..+..+++.++||++||.++++..
T Consensus 257 ~~r~~~~~~~~~~tl~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~ 334 (624)
T 2gk6_A 257 KSREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPR 334 (624)
T ss_dssp TGGGSCCCTTTTTBHHHHHTSCSS--CHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGG
T ss_pred CCCHHHCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCHH
T ss_conf 220111130456659999980523--699999999987642137778999999999889998714999999270115146
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCEEECHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 13799789999778999905655310025866999278668796020177886130178999999829965675663126
Q 001501 547 LANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626 (1066)
Q Consensus 547 L~~~~Fd~VIIDEAsQa~Epe~LIpL~~~~kklILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRm 626 (1066)
+...+||+||||||+|++++++++++...++++||||||+||||++.+..+...++..|+|+|+...+..+++|++||||
T Consensus 335 l~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~ 414 (624)
T 2gk6_A 335 LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRM 414 (624)
T ss_dssp GTTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSS
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHCCCCEEECHHHHHCCCCHHHHHHHHHCCCCCEEEHHHHCC
T ss_conf 64679887999630146758999999846874999167010698520488887587456999998669992783023076
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 98888865222235844565431122469999889999999599980695022056787679999999999999999779
Q 001501 627 HPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSG 706 (1066)
Q Consensus 627 hp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~pi~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~g 706 (1066)
||+|++|+|.+||+++|.++.....+......++|+....|++|+.+.|.++....+.|+.|..||..|++++..+++.+
T Consensus 415 ~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g 494 (624)
T 2gk6_A 415 HPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAG 494 (624)
T ss_dssp CHHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECCCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 84587654886557646568863441013567788899999899985883033378988528999999999999999759
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECH
Q ss_conf 99993999903515899999999961411142159819951126898511389998221599787678888783063001
Q 001501 707 VVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALT 786 (1066)
Q Consensus 707 i~~~dIGIITPY~~Qv~~I~~~L~~~~~~~~~~~~~V~V~TVdsfQG~E~DvVILS~VRSn~~~~iGFL~d~RRLNVALT 786 (1066)
+.+.+|||||||++|+..|++.+...+.+.......|+|+|||+|||+|+|+||+|+||++...++||+.++||||||+|
T Consensus 495 ~~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlT 574 (624)
T 2gk6_A 495 AKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALT 574 (624)
T ss_dssp CCGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEHH
T ss_conf 99780999868899999999999860223200247618932232488605789999504798787464588350210344
Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCC
Q ss_conf 21144299963210037913999999988538061278750202011014
Q 001501 787 RARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQ 836 (1066)
Q Consensus 787 RAK~~LiIVGn~~~Ls~~~~W~~ll~~~~~~~~lv~g~l~~l~~s~~~~~ 836 (1066)
|||++|+||||..+|++++.|+.|++|+++++|++++++.+|++++++++
T Consensus 575 RAk~~L~ivg~~~~l~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~ 624 (624)
T 2gk6_A 575 RARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS 624 (624)
T ss_dssp SEEEEEEEEECHHHHTTSHHHHHHHHHHHHTTCCCCSCGGGCCCCCC---
T ss_pred HHHCCEEEEECHHHHCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCC
T ss_conf 65385899988899734769999999999879889588888766412579
No 4
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=1.00 E-value=1 Score=737.75 Aligned_cols=559 Identities=28% Similarity=0.404 Sum_probs=434.4
Q ss_pred CCCEEEEEE-ECCCCEEEEEEECCCCC-----CCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCC
Q ss_conf 211799998-05788089999845898-----877889999799995799999851599999992365389999224899
Q 001501 247 KDNVTIRWD-IGLNKKRVAYFVFPKED-----NELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQG 320 (1066)
Q Consensus 247 ~~~~~~~~~-~~l~~k~~~~~~~~~~~-----~~~~l~~GD~v~l~~~~~~~~~~~~~~G~V~~i~~~~~v~i~l~~~~~ 320 (1066)
.-++.+.+. .++.++.+..|...+.. ...+|.+||.|.+...... ..+...|+|.++.. ++|.|.+.....
T Consensus 45 ~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~Gd~v~~~~~~~~--~~~~~~g~v~~~~~-~~i~v~~~~~~~ 121 (646)
T 4b3f_X 45 LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANE--GSQLATGILTRVTQ-KSVTVAFDESHD 121 (646)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEESCC---CCCCCCCCCTTCEEEEEETTTT--SCCCEEEEEEEEET-TEEEEECC----
T ss_pred ECCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC--CCCEEEEEEEEEEC-CEEEEEECCCCC
T ss_conf 326488888965798599999835778877786678998998999966899--87148999999949-999999888653
Q ss_pred --CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf --973358871499960545399999999999973101034566420598123443204799777999999999999999
Q 001501 321 --VPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFA 398 (1066)
Q Consensus 321 --~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~~e~~~s~~i~~~llg~~~~~~~~~~~lp~~~~~~~~~~LN~sQ~~A 398 (1066)
........|.+++.+++++|+||+.||..+..........+++.+++........ ...+..| ..+.||++|++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~~-~~~~~~~---~~~~LN~~Q~~A 197 (646)
T 4b3f_X 122 FQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPAS-EIHPLTF---FNTCLDTSQKEA 197 (646)
T ss_dssp ---CCCSSCCEEEEEECCHHHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCCCC-CCCCCCC---SSTTCCHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC-CCCCCCC---CCCCCCHHHHHH
T ss_conf 333557898479998066068999999999852124672577999874999999765-5576532---578889999999
Q ss_pred HHHHHC-CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCH
Q ss_conf 999732-9918998789982768999999999992998099990839999999999995299099832211001379501
Q 001501 399 VKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVE 477 (1066)
Q Consensus 399 V~~aL~-~~lsLIqGPPGTGKTtTia~iI~~L~k~~~~kILV~ApSN~AvD~L~eRL~~~gl~ivRl~~~sre~i~~~~~ 477 (1066)
|..++. ++++||+||||||||+|++++|.++++.+. +||+|||||+|||+|++||...+.+++|+|+.++.. ..+.
T Consensus 198 V~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~-~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~~--~~~~ 274 (646)
T 4b3f_X 198 VLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLL--ESIQ 274 (646)
T ss_dssp HHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHHHHHHHTTCCEEECSCCSSCC--HHHH
T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHHH
T ss_conf 9999658996599889998889999999999984898-299991851888799999986277658823656520--2554
Q ss_pred HHHHHHHHHHCCCH-HHHHHHH-HHHHH---------HHHCCCCHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 33488897402611-3788989-77746---------532248904---7999999999999999721552001122358
Q 001501 478 HLTLHYQVRHLDTS-EKSELHK-LQQLK---------DEQGELSSS---DEKKYKALKRATEREISQSADVICCTCVGAG 543 (1066)
Q Consensus 478 ~l~l~~~i~~~~~~-~~~~L~k-l~~lk---------~e~~~ls~~---~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~ 543 (1066)
...+...+...+.. ....+.+ +..+. .+...+... ..+.++........+.+..++||++||++++
T Consensus 275 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~ 354 (646)
T 4b3f_X 275 QHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGAS 354 (646)
T ss_dssp TTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHH
T ss_conf 30188898504178899999988899998634322378887778899999999988888888988763354222201222
Q ss_pred CC----CCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCEEECHHHHHHCCHHHHHHHHHHCC--CCC
Q ss_conf 85----313799789999778999905655310025866999278668796020177886130178999999829--965
Q 001501 544 DP----RLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLG--LKP 617 (1066)
Q Consensus 544 ~~----~L~~~~Fd~VIIDEAsQa~Epe~LIpL~~~~kklILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g--~~~ 617 (1066)
.. .+...+||+||||||+|++|+++|+|+. .++++||||||+||||++.+..+...++..|+|+|+.... ...
T Consensus 355 ~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~-~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v 433 (646)
T 4b3f_X 355 ADGPLKLLPESYFDVVVIDECAQALEASCWIPLL-KARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 433 (646)
T ss_dssp SSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGG-GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCC-CCCEEEECCCCCCCCCEECCHHHHHCCCCCHHHHHHHHHCCCCEE
T ss_conf 3358876431268889971754445578875203-554289707865568501243666605411299999986698615
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEEECCCE---EECCCCCCCCCHHHH
Q ss_conf 675663126988888652222358445654311224699998--899999995999806950---220567876799999
Q 001501 618 IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF--PWPVPNRPMFFYVQMGQE---EISASGTSYLNRTEA 692 (1066)
Q Consensus 618 i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~--~~p~~~~pi~f~~~~g~e---e~~~~~~S~~N~~EA 692 (1066)
.+|++||||||.|++|+|+.||+|+|.++.....+....... .++....|++|+++.|.. .....+.|+.|..||
T Consensus 434 ~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA 513 (646)
T 4b3f_X 434 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEV 513 (646)
T ss_dssp EECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 53520127768888655776318845458406655420366666664568852788548876432202688664678999
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 99999999999779999939999035158999999999614111421598199511268985113899982215997876
Q 001501 693 ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGI 772 (1066)
Q Consensus 693 ~~V~~iV~~Ll~~gi~~~dIGIITPY~~Qv~~I~~~L~~~~~~~~~~~~~V~V~TVdsfQG~E~DvVILS~VRSn~~~~i 772 (1066)
.+|..+++.|++.|+++.+|||||||++|+.+|++.|... +.+|+|+|||+|||+|+|+||+|+||+|....+
T Consensus 514 ~~V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~l~~~-------~~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~i 586 (646)
T 4b3f_X 514 RLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHR-------HPELEIKSVDGFQGREKEAVILSFVRSNRKGEV 586 (646)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTT-------CTTCEEEEGGGGTTCCEEEEEEECCCCCTTCCC
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHH-------CCCCEECCHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf 9999999999966989684999899799999999999975-------999798784316645478899995067999996
Q ss_pred CCCCCCCCEEEECHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEECC
Q ss_conf 788887830630012114429996321003791399999998853806127
Q 001501 773 GFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEG 823 (1066)
Q Consensus 773 GFL~d~RRLNVALTRAK~~LiIVGn~~~Ls~~~~W~~ll~~~~~~~~lv~g 823 (1066)
||+.|+||||||+||||++||||||..+|+++++|++|++|+++++++..+
T Consensus 587 GFl~~~rRlNVAlTRAk~~liivGn~~~l~~~~~~~~li~~~~~~g~~~~~ 637 (646)
T 4b3f_X 587 GFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 637 (646)
T ss_dssp CSTTCHHHHHHHHHTEEEEEEEEECHHHHTTSHHHHHHHHHHHHSSEEEEG
T ss_pred CCCCCCCCEEEEHHHHHCEEEEEECHHHHCCCHHHHHHHHHHHHCCCEEEH
T ss_conf 644896848727456618089997268964787999999999987989658
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=1.00 E-value=1 Score=290.10 Aligned_cols=291 Identities=21% Similarity=0.217 Sum_probs=190.0
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999999997329918998789982768999999999992998099990839999999999995299099832211
Q 001501 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (1066)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~lsLIqGPPGTGKTtTia~iI~~L~k~~~~kILV~ApSN~AvD~L~eRL~~~gl~ivRl~~~s 468 (1066)
..||++|++|+..++..++++|+||||||||+++..++..+...+ .+|+++|||++|+++|.+++... .
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~~~~---a------- 256 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVTGRT---A------- 256 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHTSC---E-------
T ss_pred CCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHHCCC---H-------
T ss_conf 799999999999997688799995999988999999999998569-82999648589999767663630---9-------
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 00137950133488897402611378898977746532248904799999999999999972155200112235885313
Q 001501 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (1066)
Q Consensus 469 re~i~~~~~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~L~ 548 (1066)
.++|..+.. .. + ........
T Consensus 257 ----------~Tih~ll~~---------------~~---------------------------------~--~~~~~~~~ 276 (574)
T 3e1s_A 257 ----------STVHRLLGY---------------GP---------------------------------Q--GFRHNHLE 276 (574)
T ss_dssp ----------EEHHHHTTE---------------ET---------------------------------T--EESCSSSS
T ss_pred ----------HHHHHHHCC---------------CC---------------------------------C--HHHHHHCC
T ss_conf ----------899998767---------------92---------------------------------0--32320103
Q ss_pred CCCCCEEEEECCCCCCHHHH--HHHCCCCCCEEEEECCCCCCCCEEECHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 79978999977899990565--5310025866999278668796020177886130178999999829965675663126
Q 001501 549 NFRFRQVLIDESTQATEPEC--LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626 (1066)
Q Consensus 549 ~~~Fd~VIIDEAsQa~Epe~--LIpL~~~~kklILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRm 626 (1066)
...+|+||||||+|++...+ ++..+....++|||||+.||+|+.. .+.|..+.. ..+.+.|+++||+
T Consensus 277 ~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~----------g~~~~~l~~-~~~~~~L~~~~R~ 345 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDA----------GLPLLALAQ-AAPTIKLTQVYRQ 345 (574)
T ss_dssp CCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSS----------CCHHHHHHH-HSCEEECCCCCHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC----------CCHHHHHHH-CCCEEECCEEEEC
T ss_conf 56588899717567789999999983768988999954332687668----------837999996-3988985201818
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9--88888652222358445654311224699998899999995999806950220567876799999999999999997
Q 001501 627 H--PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR 704 (1066)
Q Consensus 627 h--p~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~pi~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~ 704 (1066)
. ..|..+++.+ ..|.+.... ....|+.....++ .+..+.+.+.
T Consensus 346 ~~~s~I~~~a~~i-~~g~~~~~~------------------~d~~~~~~~~~~~------------~~~~i~~~~~---- 390 (574)
T 3e1s_A 346 AAKNPIIQAAHGL-LHGEAPAWG------------------DKRLNLTEIEPDG------------GARRVALMVR---- 390 (574)
T ss_dssp HHTCHHHHHHHHH-HTTCCCCCC------------------BTTEEEEECCSTT------------CHHHHHHHHH----
T ss_pred CCCCHHHHHHHHH-HCCCCCCCC------------------CCEEEEECCCHHH------------HHHHHHHHHH----
T ss_conf 9961899999998-679986667------------------8769983799999------------9999999986----
Q ss_pred CCCCC-CCEEEEECCHHH---HHHHHHHHHHCC-----------------------------------------------
Q ss_conf 79999-939999035158---999999999614-----------------------------------------------
Q 001501 705 SGVVP-SQIGVITPYEGQ---RAYIVNYMSRNG----------------------------------------------- 733 (1066)
Q Consensus 705 ~gi~~-~dIGIITPY~~Q---v~~I~~~L~~~~----------------------------------------------- 733 (1066)
++.+ .+|.|++|.+.. +..+...++...
T Consensus 391 -~~~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l 469 (574)
T 3e1s_A 391 -ELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARL 469 (574)
T ss_dssp -HTTSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCE
T ss_pred -CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCEEEEEECCCCCCEECCCEEEEECCCCCEE
T ss_conf -4584357489986338853599999999997588887221278177469979993037524634586368971779989
Q ss_pred ---------CHHHHCCCCEE---EEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEEECCCCC
Q ss_conf ---------11142159819---951126898511389998221599787678888783063001211442999632100
Q 001501 734 ---------ALRQQLYKEIE---VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL 801 (1066)
Q Consensus 734 ---------~~~~~~~~~V~---V~TVdsfQG~E~DvVILS~VRSn~~~~iGFL~d~RRLNVALTRAK~~LiIVGn~~~L 801 (1066)
.+.......++ +.|||++||+|||.||+.++... ..+.+++++|||+||||+.|+|+|+.+.|
T Consensus 470 ~v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l 544 (574)
T 3e1s_A 470 TVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAW 544 (574)
T ss_dssp EEEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHH
T ss_pred EEEECCEEEEECHHHHHHHHHEEEEEHHHHCCCCCCEEEEECCCCC-----CCCCCCCEEEEEEEEEEEEEEEEECHHHH
T ss_conf 9998996999726774201011330088747866886999867765-----55345361898713016689999789999
Q ss_pred C
Q ss_conf 3
Q 001501 802 S 802 (1066)
Q Consensus 802 s 802 (1066)
.
T Consensus 545 ~ 545 (574)
T 3e1s_A 545 Q 545 (574)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 6
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=1.00 E-value=1 Score=287.71 Aligned_cols=313 Identities=17% Similarity=0.187 Sum_probs=175.2
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHC------CC
Q ss_conf 99999999999997329918998789982768999999999992---9980999908399999999999952------99
Q 001501 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT------GL 459 (1066)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~lsLIqGPPGTGKTtTia~iI~~L~k~---~~~kILV~ApSN~AvD~L~eRL~~~------gl 459 (1066)
..||++|++||... .+..+|.||||||||+|+++++.+++.. .+.+||++++||+|+++|.+|+... .+
T Consensus 8 ~~Ln~~Q~~av~~~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAAP--RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred HCCCHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 54999999998188--9987999789987899999999999983799952589895618999999999998725556780
Q ss_pred EEEEECCCCCCC---------CCCCCH-------HHHHHHHHHHCCC----HHHHHH-HHHHHHHHHH---CCCC---HH
Q ss_conf 099832211001---------379501-------3348889740261----137889-8977746532---2489---04
Q 001501 460 KVVRLCAKSREA---------VSSPVE-------HLTLHYQVRHLDT----SEKSEL-HKLQQLKDEQ---GELS---SS 512 (1066)
Q Consensus 460 ~ivRl~~~sre~---------i~~~~~-------~l~l~~~i~~~~~----~~~~~L-~kl~~lk~e~---~~ls---~~ 512 (1066)
.+.-+.+-.... ...... ...+...+..... .....+ ..+..++... ..+. ..
T Consensus 86 ~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 165 (647)
T 3lfu_A 86 WVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNP 165 (647)
T ss_dssp EEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC----CC
T ss_pred EEECHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCH
T ss_conf 89728999999999979970999898885789999999999987699821048999999999998759998998750246
Q ss_pred HHHHHHHHHHHHH-----HHHHHCCCCCCCCCCCCC-CCCC---CCCCCCEEEEECCCCCCHHHHHH--HCCCCCCEEEE
Q ss_conf 7999999999999-----999721552001122358-8531---37997899997789999056553--10025866999
Q 001501 513 DEKKYKALKRATE-----REISQSADVICCTCVGAG-DPRL---ANFRFRQVLIDESTQATEPECLI--PLVLGAKQVVL 581 (1066)
Q Consensus 513 ~~k~~~~l~~~~e-----~~iL~~a~VI~~T~~~a~-~~~L---~~~~Fd~VIIDEAsQa~Epe~LI--pL~~~~kklIL 581 (1066)
....+..+....+ ...++..+++..+..... ...+ ...+|++|+|||+|+++..+..+ .+....+++++
T Consensus 166 ~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~ 245 (647)
T 3lfu_A 166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245 (647)
T ss_dssp HHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 89999999999999999869978999999999998769899999983198999978003989999999999668987999
Q ss_pred ECCCCCCCCEEECHHHHHHCCHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 27866879602017788613017899999982--9965675663126988888652222358445654311224699998
Q 001501 582 VGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659 (1066)
Q Consensus 582 VGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~--g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~ 659 (1066)
|||++|...-. .+-....|.++... ....+.|++|||+++.|.+++|.+|+.+........ .
T Consensus 246 vGD~~QsIy~f-------rga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~~---------~ 309 (647)
T 3lfu_A 246 VGDDDQSIYGW-------RGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKL---------W 309 (647)
T ss_dssp EECGGGCCCGG-------GTCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCCC---------B
T ss_pred ECCCHHHHCCC-------CCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCC---------C
T ss_conf 80760212132-------5878899999998689985997665789977999999999985420237744---------2
Q ss_pred CCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 899999995999806950220567876799999999999999997799999399990351589999999996
Q 001501 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSR 731 (1066)
Q Consensus 660 ~~p~~~~pi~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gi~~~dIGIITPY~~Qv~~I~~~L~~ 731 (1066)
.......++.++.... ...|+..|+..+..++..|+.+++|+||++++.|...+...|..
T Consensus 310 ~~~~~~~~~~~~~~~~------------~~~e~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l~~ 369 (647)
T 3lfu_A 310 TDGADGEPISLYCAFN------------ELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQ 369 (647)
T ss_dssp CSSCCCCCEEEEEEEE------------HHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCC------------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 6788999628996698------------59999999999999997698806789998474439999999997
No 7
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=1.00 E-value=1 Score=280.16 Aligned_cols=310 Identities=16% Similarity=0.166 Sum_probs=171.2
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHC------CC
Q ss_conf 99999999999997329918998789982768999999999992---9980999908399999999999952------99
Q 001501 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT------GL 459 (1066)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~lsLIqGPPGTGKTtTia~iI~~L~k~---~~~kILV~ApSN~AvD~L~eRL~~~------gl 459 (1066)
..||++|++||... .+..+|.|+||||||+++++++.+|+.. .+.+||++||||+|+++|.+|+... ++
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred HHCCHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 52899999998288--9988999749997899999999999996699889968782669999999999999724655681
Q ss_pred EEEEECCCCCC-------CCC--CCCHH-------HHHHHHHHHCCC----HHHHH-HHHHHHHHHHH---CCCC----H
Q ss_conf 09983221100-------137--95013-------348889740261----13788-98977746532---2489----0
Q 001501 460 KVVRLCAKSRE-------AVS--SPVEH-------LTLHYQVRHLDT----SEKSE-LHKLQQLKDEQ---GELS----S 511 (1066)
Q Consensus 460 ~ivRl~~~sre-------~i~--~~~~~-------l~l~~~i~~~~~----~~~~~-L~kl~~lk~e~---~~ls----~ 511 (1066)
.+.-+.+-... ... ..... ..+...+..+.. ..... ...+..++... ..+. .
T Consensus 88 ~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 167 (724)
T 1pjr_A 88 WISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRAST 167 (724)
T ss_dssp EEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTTCCHHHHTTC---
T ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 99619999999999999985889897777899999999999987699822089999999999998769999999986237
Q ss_pred HHHHHHHHHHHHHHH-----HHHHCCCCCCCCCCCCC-CCCC---CCCCCCEEEEECCCCCCHHHHHH-HCCC-CCCEEE
Q ss_conf 479999999999999-----99721552001122358-8531---37997899997789999056553-1002-586699
Q 001501 512 SDEKKYKALKRATER-----EISQSADVICCTCVGAG-DPRL---ANFRFRQVLIDESTQATEPECLI-PLVL-GAKQVV 580 (1066)
Q Consensus 512 ~~~k~~~~l~~~~e~-----~iL~~a~VI~~T~~~a~-~~~L---~~~~Fd~VIIDEAsQa~Epe~LI-pL~~-~~kklI 580 (1066)
........+....+. ..++..+++..+..... .+.+ ...+|++|+|||+|+++..+..+ -++. ...+++
T Consensus 168 ~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~ 247 (724)
T 1pjr_A 168 YYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNIC 247 (724)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEEHHHCCCHHHHHHHHHHHCCCCEEE
T ss_conf 89999999999999999985999999999999999865979999998639899987676089999999999976898699
Q ss_pred EECCCCCCCCEEECHHHHHHCCHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 927866879602017788613017899999982--996567566312698888865222235844565431122469999
Q 001501 581 LVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGID 658 (1066)
Q Consensus 581 LVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~--g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~ 658 (1066)
+|||++|...-. + |-....|.++... +...+.|++|||+++.|++++|.++..+......
T Consensus 248 vVGD~~QsIY~f------R-GA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k----------- 309 (724)
T 1pjr_A 248 AVGDADQSIYRW------R-GADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPK----------- 309 (724)
T ss_dssp EEECGGGCCCGG------G-TCCTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCC-----------
T ss_pred EEECCHHHCCCC------C-CCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC-----------
T ss_conf 997806624424------5-8898999999987799819989987899789999999999857344676-----------
Q ss_pred CCCC--CCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 8899--999995999806950220567876799999999999999997-79999939999035158999999999
Q 001501 659 FPWP--VPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR-SGVVPSQIGVITPYEGQRAYIVNYMS 730 (1066)
Q Consensus 659 ~~~p--~~~~pi~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~-~gi~~~dIGIITPY~~Qv~~I~~~L~ 730 (1066)
..|+ ....++.++... ....|+..|+..+..++. .|+.+++|+||++.+.|...+.+.|.
T Consensus 310 ~l~~~~~~g~~i~~~~~~------------~~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~le~~L~ 372 (724)
T 1pjr_A 310 RIWTENPEGKPILYYEAM------------NEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLL 372 (724)
T ss_dssp CCBCSSCCCCCEEEEEEE------------EHHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECC------------CHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHHHH
T ss_conf 566656899954999559------------879999999999999998269984463564305214899999998
No 8
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=1.00 E-value=1 Score=268.14 Aligned_cols=349 Identities=19% Similarity=0.226 Sum_probs=194.6
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999997329918998789982768999999999992---998099990839999999999995299099832211
Q 001501 392 NASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (1066)
Q Consensus 392 N~sQ~~AV~~aL~~~lsLIqGPPGTGKTtTia~iI~~L~k~---~~~kILV~ApSN~AvD~L~eRL~~~gl~ivRl~~~s 468 (1066)
++.|+.|+..++.+++++|+||||||||++++.++..+... ...+|+++|||++|+++|.+.+......+ .+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCC
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCC-CCCHHH
T ss_conf 9999999999962998999949999789999999999998630579759999187368999999999887507-877888
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 00137950133488897402611378898977746532248904799999999999999972155200112235885313
Q 001501 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (1066)
Q Consensus 469 re~i~~~~~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~L~ 548 (1066)
+..+. ....++| ++...... ...+ ......
T Consensus 230 ~~~~~--~~~~Tih---------------~ll~~~~~--------~~~~-------------------------~~~~~~ 259 (608)
T 1w36_D 230 KKRIP--EDASTLH---------------RLLGAQPG--------SQRL-------------------------RHHAGN 259 (608)
T ss_dssp CCSCS--CCCBTTT---------------SCC--------------------------------------------CTTS
T ss_pred HHCCC--HHHHHHH---------------HHHCCCCC--------CHHH-------------------------HHCCCC
T ss_conf 73240--5555057---------------55205898--------1677-------------------------752689
Q ss_pred CCCCCEEEEECCCCCCHHH--HHHHCCCCCCEEEEECCCCCCCCEEECHH------HHHHCCHHHHHHHHHHCC------
Q ss_conf 7997899997789999056--55310025866999278668796020177------886130178999999829------
Q 001501 549 NFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKK------AARAGLAQSLFERLVLLG------ 614 (1066)
Q Consensus 549 ~~~Fd~VIIDEAsQa~Epe--~LIpL~~~~kklILVGD~~QLpPvv~s~~------a~~~gl~~SLFERL~~~g------ 614 (1066)
...+++||||||+|+++.. .++..+....++||+||+.||+|+..... ....++..+.++++....
T Consensus 260 ~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~ 339 (608)
T 1w36_D 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 (608)
T ss_dssp CCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCC
T ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf 87799999945250899999999984888988999766044588789807999998775366678899998731754343
Q ss_pred -----CC-----CEEEEEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C---------------------
Q ss_conf -----96-----5675663126988--888652222358445654311224699998-8---------------------
Q 001501 615 -----LK-----PIRLQVQYRMHPS--LSEFPSNSFYEGTLQNGVTINERQSSGIDF-P--------------------- 660 (1066)
Q Consensus 615 -----~~-----~i~L~~qYRmhp~--I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~-~--------------------- 660 (1066)
.+ .++|+++||+++. |..+++.+ ..|........-......+.+ +
T Consensus 340 ~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (608)
T 1w36_D 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 (608)
T ss_dssp CSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSBCCBCCSTTTHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCCCCEEECCEEEEECCCCHHHHHHHHH-HCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 21123554446277622545207843599999998-65881568998547888659972688678999999999999999
Q ss_pred --------CCCC----CCCEEEEEE--CCC---EEECCCCCCCCCH-------HHHHHH----HHHHHHHHHCCCCCCCE
Q ss_conf --------9999----999599980--695---0220567876799-------999999----99999999779999939
Q 001501 661 --------WPVP----NRPMFFYVQ--MGQ---EEISASGTSYLNR-------TEAANV----EKIVTTFLRSGVVPSQI 712 (1066)
Q Consensus 661 --------~p~~----~~pi~f~~~--~g~---ee~~~~~~S~~N~-------~EA~~V----~~iV~~Ll~~gi~~~dI 712 (1066)
++.. ........- .|. ...........|. .+..+- +-+.+.-...++.+++|
T Consensus 419 l~~~~~~~~~~~~~~~~~~~~vL~~~~~g~~gv~~lN~~i~~~l~~~~~~~~~~~~~~~~Gd~Vm~~~Nd~~~gl~NGdi 498 (608)
T 1w36_D 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 (608)
T ss_dssp HHHHHTCCCSSTTHHHHTTEEEEESCSSSSSSHHHHHHHHHGGGTSCC--------------------------------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECHHHCCCCCCE
T ss_conf 99865124889998898665532774688366999999999983856765546666542897236755561433637976
Q ss_pred EEEECCHHHHHHHHHHHHH-CC---CHHH---HCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 9990351589999999996-14---1114---215981995112689851138999822159978767888878306300
Q 001501 713 GVITPYEGQRAYIVNYMSR-NG---ALRQ---QLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVAL 785 (1066)
Q Consensus 713 GIITPY~~Qv~~I~~~L~~-~~---~~~~---~~~~~V~V~TVdsfQG~E~DvVILS~VRSn~~~~iGFL~d~RRLNVAL 785 (1066)
|+|++.... +.-.+.. .+ .+.. .......+.|||++||+|+|.||+.+..... .+.+++++|||+
T Consensus 499 G~V~~~~~~---l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~-----~~~~~~~~Yva~ 570 (608)
T 1w36_D 499 GIALDRGQG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-----PVVTRELVYTAV 570 (608)
T ss_dssp ---------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC-----SSSCHHHHHHHH
T ss_pred EEEEECCCE---EEEEEECCCCCEEEECHHHCCCCCEEEEEEEEECCCCCCCEEEEEECCCCC-----CHHHHHHHHHHH
T ss_conf 999973881---799998899958995657777624489998781364348869999189866-----133422377316
Q ss_pred HHHCCCEEEEECCCC
Q ss_conf 121144299963210
Q 001501 786 TRARYGIVILGNPKV 800 (1066)
Q Consensus 786 TRAK~~LiIVGn~~~ 800 (1066)
||||+.|+|+++...
T Consensus 571 tRa~~~l~l~~~~~~ 585 (608)
T 1w36_D 571 TRARRRLSLYADERI 585 (608)
T ss_dssp TTBSSCEEEECCTTH
T ss_pred HHHHCEEEEEECHHH
T ss_conf 044366899988899
No 9
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=265.28 Aligned_cols=304 Identities=16% Similarity=0.136 Sum_probs=163.3
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHC-------CC
Q ss_conf 9999999999997329918998789982768999999999992---9980999908399999999999952-------99
Q 001501 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT-------GL 459 (1066)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~lsLIqGPPGTGKTtTia~iI~~L~k~---~~~kILV~ApSN~AvD~L~eRL~~~-------gl 459 (1066)
.||++|++||... .+..+|.|+||||||+|+++++.+++.. ...+||++||||+|+++|.+|+... .+
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9998999998388--99779995799976899999999999856998789587854689999999999987073234688
Q ss_pred EEEEECCCCCCCC---------CCCCHHH---HHHHHHHHCCC----HHHHHHHH----HHHHHHHHCCCCHHH------
Q ss_conf 0998322110013---------7950133---48889740261----13788989----777465322489047------
Q 001501 460 KVVRLCAKSREAV---------SSPVEHL---TLHYQVRHLDT----SEKSELHK----LQQLKDEQGELSSSD------ 513 (1066)
Q Consensus 460 ~ivRl~~~sre~i---------~~~~~~l---~l~~~i~~~~~----~~~~~L~k----l~~lk~e~~~ls~~~------ 513 (1066)
.+.-+.+-....+ ......+ .....++.... ........ +..++.. .+....
T Consensus 80 ~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~--~~~~~~~~~~~~ 157 (673)
T 1uaa_A 80 MISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKND--LKTPSQAAASAI 157 (673)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTT--TCCTTHHHHTCC
T ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_conf 897287879999999899858999988707999999999999976434544699999999999873--999899998742
Q ss_pred ---HH----HHHHHHHHH-HHHHHHCCCCCCCCCCCCC-CCC---CCCCCCCEEEEECCCCCCHHHHHH--HCCCCCCEE
Q ss_conf ---99----999999999-9999721552001122358-853---137997899997789999056553--100258669
Q 001501 514 ---EK----KYKALKRAT-EREISQSADVICCTCVGAG-DPR---LANFRFRQVLIDESTQATEPECLI--PLVLGAKQV 579 (1066)
Q Consensus 514 ---~k----~~~~l~~~~-e~~iL~~a~VI~~T~~~a~-~~~---L~~~~Fd~VIIDEAsQa~Epe~LI--pL~~~~kkl 579 (1066)
.. .|....... ....++..+++..+..... ... ....+|++|+|||+|+++..+.-+ .+.....++
T Consensus 158 ~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l 237 (673)
T 1uaa_A 158 GERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARF 237 (673)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 24899999999999999998699988999999999987496899999830868998660018987999999996689859
Q ss_pred EEECCCCCCCCEEECHHHHHHCCHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9927866879602017788613017899999982--99656756631269888886522223584456543112246999
Q 001501 580 VLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGI 657 (1066)
Q Consensus 580 ILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~--g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~ 657 (1066)
++|||++|...-. .|-....|.++... +...+.|++|||+++.|.+++|.+|..+......
T Consensus 238 ~~vGD~~QsIy~f-------rga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~~---------- 300 (673)
T 1uaa_A 238 TVVGDDDQSIYSW-------RGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEK---------- 300 (673)
T ss_dssp EEECCGGGCCCGG-------GTBCTTHHHHHHHHSTTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSCC----------
T ss_pred EEEECCHHHHHHC-------CCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCHHCCCC----------
T ss_conf 9981752655450-------59988999999986899819978878899839999999999855311465----------
Q ss_pred CCCCC--CCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 98899--99999599980695022056787679999999999999999-779999939999035158999999
Q 001501 658 DFPWP--VPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL-RSGVVPSQIGVITPYEGQRAYIVN 727 (1066)
Q Consensus 658 ~~~~p--~~~~pi~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll-~~gi~~~dIGIITPY~~Qv~~I~~ 727 (1066)
..|+ ..+.++.++... ....|+..|+..+..++ ..|+.+++|+||++.+.|...+..
T Consensus 301 -~l~~~~~~g~~i~~~~~~------------~~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~~~~~~l~~ 360 (673)
T 1uaa_A 301 -RLFSELGYGAELKVLSAN------------NEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEK 360 (673)
T ss_dssp -CCCBSSCCCCCBEEEECS------------SHHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGGTTHHH
T ss_pred -CCCCCCCCCCCCEEEECC------------CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf -445658889971488469------------989999999999999886159980478999726264899999
No 10
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=1.00 E-value=1 Score=252.94 Aligned_cols=305 Identities=15% Similarity=0.150 Sum_probs=187.0
Q ss_pred CCCCCCCHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCE
Q ss_conf 9999999999999999732-----99189987899827689999999999929980999908399999999999952990
Q 001501 386 PGLPELNASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK 460 (1066)
Q Consensus 386 ~~~~~LN~sQ~~AV~~aL~-----~~lsLIqGPPGTGKTtTia~iI~~L~k~~~~kILV~ApSN~AvD~L~eRL~~~gl~ 460 (1066)
..+.+||+.|++|+..++. .++.+|.||||||||+++..++..|...+..+|+++||||+|+++|.+++...
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~--- 97 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE--- 97 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC---
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCC---
T ss_conf 86234899999999999998736897799996999989999999999998649960999667578999887661654---
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99832211001379501334888974026113788989777465322489047999999999999999721552001122
Q 001501 461 VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCV 540 (1066)
Q Consensus 461 ivRl~~~sre~i~~~~~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~~~k~~~~l~~~~e~~iL~~a~VI~~T~~ 540 (1066)
. .++|..+..... ... ... .+.
T Consensus 98 ~-----------------~T~h~~~~~~~~---------------~~~----------------------~~~-~~~--- 119 (459)
T 3upu_A 98 A-----------------STIHSILKINPV---------------TYE----------------------ENV-LFE--- 119 (459)
T ss_dssp E-----------------EEHHHHHTEEEE---------------ECS----------------------SCE-EEE---
T ss_pred H-----------------HHHHHHHCCCCC---------------CCC----------------------CCC-HHC---
T ss_conf 1-----------------559988546855---------------455----------------------300-200---
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCHHHH--HHHCCCCCCEEEEECCCCCCCCEEECHHHHHHCCHHHHHHHHHHCCCCCE
Q ss_conf 3588531379978999977899990565--53100258669992786687960201778861301789999998299656
Q 001501 541 GAGDPRLANFRFRQVLIDESTQATEPEC--LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPI 618 (1066)
Q Consensus 541 ~a~~~~L~~~~Fd~VIIDEAsQa~Epe~--LIpL~~~~kklILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g~~~i 618 (1066)
. .......++++||||||++++.... ++.+.....++++|||+.||+|+..... ...+ ..++. ......+
T Consensus 120 ~--~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~--~~~l-~~~~~---~~~~~~~ 191 (459)
T 3upu_A 120 Q--KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGEN--TAYI-SPFFT---HKDFYQC 191 (459)
T ss_dssp E--CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSC--SCCC-CGGGT---CTTEEEE
T ss_pred C--CCCCCCCCCCEEEEECCHHCCHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCC--HHHH-HHHHH---CCCCCEE
T ss_conf 0--3333346788999988011899999999984568988999887787688668862--4767-79985---6897287
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 75663126988888652222358445654311224699998899999995999806950220567876799999999999
Q 001501 619 RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKI 698 (1066)
Q Consensus 619 ~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~pi~f~~~~g~ee~~~~~~S~~N~~EA~~V~~i 698 (1066)
.|++|||+++.|.++++.+.....+.. +. ...+-+ +...+. .| +...
T Consensus 192 ~L~~~~R~~~~I~~~a~~lr~g~~~~~------~~----------~~~~~v-~~~~~~-------------~~---~~~~ 238 (459)
T 3upu_A 192 ELTEVKRSNAPIIDVATDVRNGKWIYD------KV----------VDGHGV-RGFTGD-------------TA---LRDF 238 (459)
T ss_dssp ECCCCCCCCCHHHHHHHHHHTTCCCCC------EE----------ETTEEE-EECCSS-------------SS---HHHH
T ss_pred ECEEEEECCCHHHHHHHHHHCCCCCCH------HC----------CCCCCE-EECCCH-------------HH---HHHH
T ss_conf 550464089579999999975887610------02----------489983-755866-------------88---9999
Q ss_pred HHHHHHCCCCCC---CEEEEECCHHHHHHHHHHHHHCCCH------------------H---------------------
Q ss_conf 999997799999---3999903515899999999961411------------------1---------------------
Q 001501 699 VTTFLRSGVVPS---QIGVITPYEGQRAYIVNYMSRNGAL------------------R--------------------- 736 (1066)
Q Consensus 699 V~~Ll~~gi~~~---dIGIITPY~~Qv~~I~~~L~~~~~~------------------~--------------------- 736 (1066)
+.........+. +++||++.+.|+..+.+.++..... .
T Consensus 239 i~~~~~~~~~~~~~~~~aIL~rtN~~~~~~n~~lr~~~~~~~~~~~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 318 (459)
T 3upu_A 239 MVNYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRKKIFETDKDFIVGEIIVMQEPLFKTYKIDGKPVSEIIFNNGQLVR 318 (459)
T ss_dssp HHHHHHHTTTCSCCTTEEEEESSHHHHHHHHHHHHHHHTTCCCSCCTTCEEEESSCEEEEEEETTEEEEEEEECTTCEEE
T ss_pred HHHHHHHCCCCCHHHCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHCCCCCCCCCCCEEEECCCCEEE
T ss_conf 99999760894301116999811767999999999985166886678878885010103453478755408981898899
Q ss_pred ---------------------------------H----------------------------------------------
Q ss_conf ---------------------------------4----------------------------------------------
Q 001501 737 ---------------------------------Q---------------------------------------------- 737 (1066)
Q Consensus 737 ---------------------------------~---------------------------------------------- 737 (1066)
.
T Consensus 319 v~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 398 (459)
T 3upu_A 319 IIEAEYTSTFVKARGVPGEYLIRHWDLTVETYGDDEYYREKIKIISSDEELYKFNLFLGKTAETYKNWNKGGKAPWSDFW 398 (459)
T ss_dssp EEEEEEEEEEECCTTSCSCEEEEEEEEEEEECSSSCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHSCCSSSSCCTHHHH
T ss_pred EEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99960430111234667677479999999645787620589995178799999999999999998761025606789999
Q ss_pred ---H---CCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEE
Q ss_conf ---2---159819951126898511389998221599787678888783063001211442999
Q 001501 738 ---Q---LYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVIL 795 (1066)
Q Consensus 738 ---~---~~~~V~V~TVdsfQG~E~DvVILS~VRSn~~~~iGFL~d~RRLNVALTRAK~~LiIV 795 (1066)
. ....+.+.|+|++||+|||.||+...... ......++|++|||+||||+.|+++
T Consensus 399 ~l~~~~~~~~~~~~~t~h~~kG~e~~~v~~~~~~~~---~~~~~~~~~~~yva~tRa~~~l~~~ 459 (459)
T 3upu_A 399 DAKSQFSKVKALPASTFHKAQGMSVDRAFIYTPCIH---YADVELAQQLLYVGVTRGRYDVFYV 459 (459)
T ss_dssp HHHTTBCCEEESSEEETGGGTTCCEEEEEEECGGGG---GSCHHHHHHHHHHHHHHEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCC---CCCHHHHHHEEEEEECCEEEEEEEC
T ss_conf 999987615857999888236777888999548888---7686887540465521230479959
Done!