Query 001502
Match_columns 1066
No_of_seqs 25 out of 27
Neff 1.7
Searched_HMMs 29240
Date Tue Mar 26 17:01:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001502.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_802-806//hhsearch_pdb/001502hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r9f_A Core protein P19; prote 1.0 1 1 18.8 -1.3 22 456-477 5-27 (136)
2 1rpu_A 19 kDa protein; RNAI, p 1.0 1 1 18.5 -1.3 21 456-476 27-48 (172)
3 2fc6_A Nuclear, target of EGR1 1.0 1 1 15.6 -0.9 21 91-113 19-39 (50)
4 3m6c_A 60 kDa chaperonin 1; ch 1.0 1 1 15.4 -0.6 18 642-659 166-184 (194)
5 4gga_A P55CDC, cell division c 1.0 1 1 15.2 7.1 82 88-189 96-179 (420)
6 2dyd_A Poly(A)-binding protein 1.0 1 1 15.1 -2.7 54 694-748 10-63 (85)
7 1nmr_A Poly(A)-binding protein 1.0 1 1 14.2 -5.0 54 693-747 10-63 (85)
8 3s8s_A Histone-lysine N-methyl 1.0 1 1 14.1 -1.2 61 496-557 1-61 (110)
9 1g9l_A Polyadenylate-binding p 1.0 1 1 13.4 -0.9 54 693-747 53-106 (144)
10 3ut4_A CTHE_2751, putative unc 1.0 1 1 13.1 2.3 29 359-387 40-68 (134)
No 1
>1r9f_A Core protein P19; protein-RNA complex, dimer, double helix, viral protein/RNA complex; 1.85A {Tomato bushy stunt virus} SCOP: d.255.1.1
Probab=1.00 E-value=1 Score=18.81 Aligned_cols=22 Identities=50% Similarity=0.885 Sum_probs=15.7
Q ss_pred CCCC-CCCCCCCCCEEEEEEECC
Q ss_conf 2999-999999622035874205
Q 001502 456 MSPY-DPDEGPSITGWRVQRWES 477 (1066)
Q Consensus 456 MSPy-dPdeGPsiTGWRVqrWES 477 (1066)
.+|+ -|||.|+.+.||++.=|-
T Consensus 5 ~sPFklpDESPs~~EWRlH~~e~ 27 (136)
T 1r9f_A 5 TSPFKLPDESPSWTEWRLHNDET 27 (136)
T ss_dssp CCSCSSCCCCCCHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 58751788999703530015556
No 2
>1rpu_A 19 kDa protein; RNAI, protein-RNA complex, RNA double helix, RNA length recognition, RNA binding protein/RNA complex; 2.50A {Carnation italian ringspot virus} SCOP: d.255.1.1
Probab=1.00 E-value=1 Score=18.52 Aligned_cols=21 Identities=52% Similarity=0.857 Sum_probs=15.8
Q ss_pred CCCC-CCCCCCCCCEEEEEEEC
Q ss_conf 2999-99999962203587420
Q 001502 456 MSPY-DPDEGPSITGWRVQRWE 476 (1066)
Q Consensus 456 MSPy-dPdeGPsiTGWRVqrWE 476 (1066)
.+|+ -|||.|+.+.||++.=|
T Consensus 27 ~sPFklpDESPs~~EWRlh~~e 48 (172)
T 1rpu_A 27 TSPFKLPDESPSWTEWRLYNDE 48 (172)
T ss_dssp CCSBSSCCCCCCHHHHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHCCCC
T ss_conf 5875078889870353101455
No 3
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=1.00 E-value=1 Score=15.58 Aligned_cols=21 Identities=38% Similarity=0.933 Sum_probs=15.1
Q ss_pred HHHHHHCCCHHHHHHCCCCEECC
Q ss_conf 45763114124431001110001
Q 001502 91 VPELCRNFSAVAWCGKLNAIACA 113 (1066)
Q Consensus 91 vpElcRnFSAvaWC~klN~iaca 113 (1066)
.-.+|++|||--||-+ .+-|-
T Consensus 19 ~~~iC~~FSayGwCp~--G~~Cp 39 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPL--GPQCP 39 (50)
T ss_dssp CSCBCSHHHHTCCCTT--GGGCS
T ss_pred CCCHHHHCCCCCCCCC--CCCCC
T ss_conf 2203020012552788--88788
No 4
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=15.43 Aligned_cols=18 Identities=28% Similarity=0.829 Sum_probs=9.6
Q ss_pred CCCCCCHHHHHHH-HHHHH
Q ss_conf 4311331358999-99877
Q 001502 642 SQVKANSSTWERA-IAERF 659 (1066)
Q Consensus 642 ~q~ka~ss~wera-iaeRf 659 (1066)
.|....+|.++|. +.||.
T Consensus 166 ~~ie~t~s~ydkEKLqERl 184 (194)
T 3m6c_A 166 AEIDKSDSDWDREKLGERL 184 (194)
T ss_dssp HHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
T ss_conf 9988559988999999999
No 5
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=1.00 E-value=1 Score=15.18 Aligned_cols=82 Identities=15% Similarity=0.350 Sum_probs=53.1
Q ss_pred CCCHHHHHHCC--CHHHHHHCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEECC
Q ss_conf 35845763114--1244310011100012213457999999982034888317997410388961279988548977468
Q 001502 88 KMSVPELCRNF--SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSP 165 (1066)
Q Consensus 88 KmsvpElcRnF--SAvaWC~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp 165 (1066)
-+..|+|...| +.++|- ..|.||.+...+.+ |-..+.-.-...+. .....+.|.++.|||
T Consensus 96 ~l~ap~~~~d~y~~~l~wS-~~n~lAvgld~tV~---------------lWd~~tg~~~~~~~--~~~~~~~V~sv~fsp 157 (420)
T 4gga_A 96 ILDAPEIRNDYYLNLVDWS-SGNVLAVALDNSVY---------------LWSASSGDILQLLQ--MEQPGEYISSVAWIK 157 (420)
T ss_dssp EEECTTCCCCTTCBCEEEC-TTSEEEEEETTEEE---------------EEETTTCCEEEEEE--CCSTTCCEEEEEECT
T ss_pred EEECCCCCCCCCCEEEEEC-CCCEEEEEECCEEE---------------EEECCCCCEEEEEE--ECCCCCCEEEEEECC
T ss_conf 8789887566335248787-99999999699999---------------99899997899998--148998489999979
Q ss_pred CCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 988634678730430999735899
Q 001502 166 TSCPRALLIANFYGRVTIWTQPSH 189 (1066)
Q Consensus 166 ~~cpRALLiAnf~GRvtIWtQPsq 189 (1066)
.+ +-|+++...|.|.||.-.+.
T Consensus 158 dg--~~lasgs~Dg~v~iWd~~~~ 179 (420)
T 4gga_A 158 EG--NYLAVGTSSAEVQLWDVQQQ 179 (420)
T ss_dssp TS--SEEEEEETTSCEEEEETTTT
T ss_pred CC--CEEEEEECCCEEEEEECCCC
T ss_conf 99--99999989982999986899
No 6
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=1.00 E-value=1 Score=15.10 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=40.6
Q ss_pred ECCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2256778973011312089856143654157745778998775468999998301
Q 001502 694 LDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGK 748 (1066)
Q Consensus 694 lDaDFHsLps~QhRqqygp~LDrIKCRlLeG~nAqeVRamVLDMQaRllLDMLGk 748 (1066)
..+++-+.|+-|+||.-|-.|--.--+ ++-..|..+-.|.|+|..--+|.||-.
T Consensus 10 ~as~La~~~p~~Qkq~LGE~LyplV~~-~~p~~AgKITGMLLEmd~~Ell~Lles 63 (85)
T 2dyd_A 10 LASALANSPPETQRMMLGENLYPLVDQ-LEHDQAAKVTGMLLEMDQTEVLHLLES 63 (85)
T ss_dssp SCHHHHCCCHHHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHCCCHHHHHHHHCC
T ss_conf 699987489799999888888999998-583100206664526888999999769
No 7
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=1.00 E-value=1 Score=14.23 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=38.8
Q ss_pred EECCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4225677897301131208985614365415774577899877546899999830
Q 001502 693 VLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLG 747 (1066)
Q Consensus 693 vlDaDFHsLps~QhRqqygp~LDrIKCRlLeG~nAqeVRamVLDMQaRllLDMLG 747 (1066)
..-+++-+.|+-||||.-|-.|--.--+ ++-..|..+--|.|+|..--+|.||-
T Consensus 10 l~~s~La~a~p~~Qkq~LGE~LyplV~~-~~p~~AgKITGMLLEmd~~ElL~Lle 63 (85)
T 1nmr_A 10 NLSTVLANLTPEQQKNVLGERLYNHIVA-INPAAAAKVTGMLLEMDNGEILNLLD 63 (85)
T ss_dssp TTHHHHTTCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHCSCTHHHHHHTTCC
T ss_pred CCHHHHHCCCHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHCCCHHHHHHHHC
T ss_conf 5799887599399999988989999998-68322030667676488999999976
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.12 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCH
Q ss_conf 99999125898531014689874333333589865666544533334530004999996014
Q 001502 496 GGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDI 557 (1066)
Q Consensus 496 gGqpPmqTvW~skvd~sIp~tdfkn~q~~~~~~~~d~~k~s~~~~dksk~v~fdpfdlP~d~ 557 (1066)
||+||..+++++..+.++...+++.. +...|...+++-..|....++|..-|=-|+-+.+.
T Consensus 1 Gg~~p~~~lfV~nL~~~~te~~L~~~-F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A 61 (110)
T 3s8s_A 1 GGQIPLKEVTFARLNDNVRETFLKDM-CRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGA 61 (110)
T ss_dssp -CCSCCCEEEEESCCTTCCHHHHHHH-HTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHH-HHHCCCEEEEEEEECCCCCCEEEEEEEEECCHHHH
T ss_conf 98899838999799999999999999-98569744899977799994606999998979999
No 9
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=1.00 E-value=1 Score=13.45 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=42.1
Q ss_pred EECCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4225677897301131208985614365415774577899877546899999830
Q 001502 693 VLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLG 747 (1066)
Q Consensus 693 vlDaDFHsLps~QhRqqygp~LDrIKCRlLeG~nAqeVRamVLDMQaRllLDMLG 747 (1066)
++-..+-+.|.-++||--|-.|--..-+ ++-..|..+--|.|+|..--||.||-
T Consensus 53 l~as~La~a~p~eQkq~LGE~LyplV~~-~~p~~A~KITGMLLEmd~~ElL~LLe 106 (144)
T 1g9l_A 53 LTASMLASAPPQEQKQMLGERLFPLIQA-MHPTLAGKITGMLLEIDNSELLHMLE 106 (144)
T ss_dssp CSHHHHTTCTTTTTTTTTTSSSHHHHHH-HTTSCCSSHHHHTTTSSSHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHCCCCHHHHHHHHC
T ss_conf 2599987289799999999888999998-67020122663220688899999975
No 10
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=1.00 E-value=1 Score=13.13 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998678612356666789999888630
Q 001502 359 LSPPKWAGFAPLAAYLFSWQEYLLSEAKQ 387 (1066)
Q Consensus 359 l~~p~W~GFaPLaAYLfswq~~l~se~~q 387 (1066)
|+-.||+++.+++.+|-..+++++-..++
T Consensus 40 LQD~NWPvA~~i~~~L~~~~~~l~p~I~~ 68 (134)
T 3ut4_A 40 LQDYNWPIAKDILPVVVLHQSIAMPHILT 68 (134)
T ss_dssp GSCTTSTTHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 82178832787999999755755899999
Done!