Query 001502
Match_columns 1066
No_of_seqs 25 out of 27
Neff 1.7
Searched_HMMs 13730
Date Tue Mar 26 17:07:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001502.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_802-806//hhsearch_scop/001502hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fc6a1 g.66.1.1 (A:8-44) Targ 20.9 6.4 0.00046 15.0 -0.9 14 93-106 14-27 (37)
2 d1r9fa_ d.255.1.1 (A:) Tombusv 15.2 8.6 0.00063 14.1 -1.3 23 456-478 3-26 (124)
3 d1yfqa_ b.69.4.2 (A:) Cell cyc 4.8 73 0.0053 7.8 4.3 37 150-188 6-42 (342)
4 d2g9da1 c.56.5.7 (A:3-342) Suc 4.7 76 0.0056 7.7 0.1 88 238-330 1-99 (340)
5 d2akla2 g.41.3.5 (A:3-40) Hypo 4.4 79 0.0057 7.6 -0.1 14 199-212 22-35 (38)
6 d1dy2a_ d.169.1.5 (A:) Endosta 4.0 92 0.0067 7.2 2.6 72 547-624 35-115 (168)
7 d1ifwa_ a.144.1.1 (A:) poly(A) 3.6 68 0.0049 8.1 -1.0 53 695-747 9-62 (92)
8 d1j6xa_ d.185.1.2 (A:) Autoind 3.4 1.1E+02 0.0082 6.6 2.6 23 70-95 33-55 (151)
9 g1cp9.1 d.153.1.2 (A:,B:) Peni 3.1 1.3E+02 0.0094 6.2 1.9 73 429-510 197-280 (750)
10 d2vbua1 b.43.5.2 (A:2-132) CTP 3.0 1.3E+02 0.0097 6.1 3.2 23 130-152 87-110 (131)
No 1
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.91 E-value=6.4 Score=15.00 Aligned_cols=14 Identities=50% Similarity=1.213 Sum_probs=12.0
Q ss_pred HHHHCCCHHHHHHC
Q ss_conf 76311412443100
Q 001502 93 ELCRNFSAVAWCGK 106 (1066)
Q Consensus 93 ElcRnFSAvaWC~k 106 (1066)
.+|++|||-.||-.
T Consensus 14 ~iC~~FsAyGWCP~ 27 (37)
T d2fc6a1 14 SICDNFSAYGWCPL 27 (37)
T ss_dssp CBCSHHHHTCCCTT
T ss_pred CHHHHHHHCCCCCC
T ss_conf 46243122041678
No 2
>d1r9fa_ d.255.1.1 (A:) Tombusvirus P19 core protein, VP19 {Tomato bushy stunt virus, TBSV [TaxId: 12145]}
Probab=15.19 E-value=8.6 Score=14.11 Aligned_cols=23 Identities=48% Similarity=0.859 Sum_probs=16.6
Q ss_pred CCCC-CCCCCCCCCEEEEEEECCC
Q ss_conf 2999-9999996220358742057
Q 001502 456 MSPY-DPDEGPSITGWRVQRWESS 478 (1066)
Q Consensus 456 MSPy-dPdeGPsiTGWRVqrWESs 478 (1066)
.+|+ -|||.|+.+.||++.=|-+
T Consensus 3 ~spFkLpDESPs~~EWRlH~~e~~ 26 (124)
T d1r9fa_ 3 TSPFKLPDESPSWTEWRLHNDETN 26 (124)
T ss_dssp CCSCSSCCCCCCHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 787558999986256411045568
No 3
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.83 E-value=73 Score=7.83 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=29.9
Q ss_pred ECCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 127998854897746898863467873043099973589
Q 001502 150 IADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPS 188 (1066)
Q Consensus 150 ~adsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQPs 188 (1066)
+-..|.|.|..|.|||.+ +-|+.+-.-|.|-||--..
T Consensus 6 ~~~~h~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~~~ 42 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKFDI 42 (342)
T ss_dssp CSSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEEET
T ss_pred CCCCCCCCEEEEEEECCC--CEEEEEECCCEEEEEECCC
T ss_conf 688998978889995899--9999997999299997569
No 4
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE {Vibrio cholerae [TaxId: 666]}
Probab=4.68 E-value=76 Score=7.71 Aligned_cols=88 Identities=27% Similarity=0.325 Sum_probs=56.3
Q ss_pred CHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC------CCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEE
Q ss_conf 20357742023766568998526886433046058843069------999999998621135665567966510143687
Q 001502 238 KSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQW------PPSQNGAASKWFPTAKGLLGAGPSGIMAADVII 311 (1066)
Q Consensus 238 kstFeEKflsqq~qtsa~wpnflcvcsVf~sGsVQlhWsqw------Pp~qn~t~pkWF~TsKGlLg~GpSGIma~DAII 311 (1066)
||.|+..||..--..+.-.+ +...--..-++..|..- |+ +.+..-|=...|-|.-|.-+.||.+-+.++
T Consensus 1 ~~~~~~~fl~~tl~~~~~~~----~~~~~~~~~~~~~~~~~g~l~~~p~-~~~~~~~~l~isagvHGnE~~gi~~l~~l~ 75 (340)
T d2g9da1 1 KSLFRQSFLFDSLDLDHPMV----AQTVRTEQGVTLKLHQRGVLEVIPA-QTDAATKNMVISCGIHGDETAPMELLDKWI 75 (340)
T ss_dssp CCSCSSCTTTTTSCSSSCCC----CEEEECTTSCEEEEEETTEEEEBCS-SCCSSCCEEEEEECSSSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCC----CCEEECCCCEEEEEECCCEEEEECC-CCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 94346769999864899878----5068758967999946974799767-668899849998403488678999999998
Q ss_pred EC--CCCEEEEE---ECCCCCCEE
Q ss_conf 06--98339941---011289618
Q 001502 312 TD--SGAMHVAG---VPIVNPSTV 330 (1066)
Q Consensus 312 td--sGamhVAG---Vpi~NPSTV 330 (1066)
.+ +|.+-..+ +++.||...
T Consensus 76 ~~l~~~~~~~~~~~l~~~~Np~A~ 99 (340)
T d2g9da1 76 DDIVSGFQPVAERCLFIMAHPQAT 99 (340)
T ss_dssp HHHHSSSSCCCSEEEEECCCHHHH
T ss_pred HHHHCCCCCCCEEEEEECCCHHHH
T ss_conf 633214755534899970499999
No 5
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.42 E-value=79 Score=7.62 Aligned_cols=14 Identities=36% Similarity=0.722 Sum_probs=10.7
Q ss_pred CCCCHHHHCCCCCE
Q ss_conf 42100010012202
Q 001502 199 SCWQREHEWRQDIA 212 (1066)
Q Consensus 199 ~~w~~ehEWrqd~a 212 (1066)
.|..|-|||..+.+
T Consensus 22 vCPeC~hEW~~~~~ 35 (38)
T d2akla2 22 VCPECAHEWSPNEA 35 (38)
T ss_dssp EETTTTEEECTTTT
T ss_pred ECCCCCCCCCCCCC
T ss_conf 89755574785434
No 6
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.03 E-value=92 Score=7.16 Aligned_cols=72 Identities=31% Similarity=0.582 Sum_probs=39.2
Q ss_pred CCCCCCCCCCHHHHHEEEECCCCCEEEEEEEECCEE------EEECC--CCCC-CCCEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 049999960144462002203786477566507303------43179--9784-33045721653346765766520012
Q 001502 547 SFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVH------IFSGP--NFAP-VDNYQISVGSAIAAPAFSSTSCCSAS 617 (1066)
Q Consensus 547 ~fdpfdlP~d~rtLARiVySAhgGEiavAfl~GgVh------iFSG~--nftp-VdnyqInVgsaIa~PaFSsTSCCsAS 617 (1066)
+|-+| |-+.+.-|..||+.+.--.+-|-=|||.|- ||+|. -|.+ +.-|-.+----+.-|... --.
T Consensus 35 TFRAF-LSS~~QdL~siVr~~dR~~lPiVNlrgevLF~sW~siF~g~g~~~~~~~~IySFdGrdVl~D~~WP-----~K~ 108 (168)
T d1dy2a_ 35 TFRAF-LSSHLQDLSTVVRKAERFGLPIVNLKGQVLFNNWDSIFSGDGGQFNTHIPIYSFDGRDVMTDPSWP-----QKV 108 (168)
T ss_dssp CEEES-SCBTTBCGGGSSCGGGSSSCCEECTTSCEEESCSGGGGSSSCCBCCTTSCCBBTTSCBTTTCTTCS-----SCE
T ss_pred HHHHH-HCCCCCCHHHEECCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC-----CCE
T ss_conf 02767-602524423302420047887274367650540999848888745899966617884202487776-----116
Q ss_pred EEECCCC
Q ss_conf 4321788
Q 001502 618 VWHDTNK 624 (1066)
Q Consensus 618 VWHDt~k 624 (1066)
|||..+.
T Consensus 109 vWHGS~~ 115 (168)
T d1dy2a_ 109 VWHGSNP 115 (168)
T ss_dssp EECCBCT
T ss_pred EEECCCC
T ss_conf 7736899
No 7
>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.58 E-value=68 Score=8.07 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=37.6
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2567789730113120898561436541-5774577899877546899999830
Q 001502 695 DADFHSLPSIQHRQQYGPSLDRIKCRLL-EGTNAQEVRAMVLDMQARLLLDMLG 747 (1066)
Q Consensus 695 DaDFHsLps~QhRqqygp~LDrIKCRlL-eG~nAqeVRamVLDMQaRllLDMLG 747 (1066)
-.|+-.++.-||||.-|-.|--.-.++. +-..|..+-.|.|+|-.--||.||-
T Consensus 9 ~~~~~~~~~~~qk~~LGe~Lyp~V~~~~~~pe~A~KITGMLLEm~~~ell~lL~ 62 (92)
T d1ifwa_ 9 ANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLE 62 (92)
T ss_dssp CSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHC
T ss_conf 688743699999999899889999985358322463024420787899999987
No 8
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]}
Probab=3.43 E-value=1.1e+02 Score=6.58 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=17.9
Q ss_pred CCEEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 85189998328984211135845763
Q 001502 70 PATVFCIRLKQPRSNLQHKMSVPELC 95 (1066)
Q Consensus 70 paTvf~irLkqp~s~l~hKmsvpElc 95 (1066)
--|.|.||++||+.. + |+-+++-
T Consensus 33 ~it~fDlR~~qPN~e--~-m~~~~lH 55 (151)
T d1j6xa_ 33 LIVKYDVRFKQPNRD--H-MDMPSLH 55 (151)
T ss_dssp EEEEEEEECSCTTTC--C-CCHHHHH
T ss_pred EEEEEEEECCCCCCC--C-CCCCCHH
T ss_conf 899887600588847--5-8982046
No 9
>g1cp9.1 d.153.1.2 (A:,B:) Penicillin acylase {Providencia rettgeri [TaxId: 587]}
Probab=3.06 E-value=1.3e+02 Score=6.17 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=36.6
Q ss_pred CCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCC-----------
Q ss_conf 467127653578885079999983123299999999962203587420578852663025898888999-----------
Q 001502 429 GSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGG----------- 497 (1066)
Q Consensus 429 gsGVtaVAFDPtrgGSvIavVIVEGqYMSPydPdeGPsiTGWRVqrWESs~qpVvlhpifgnptss~gG----------- 497 (1066)
||-.=+|+=+-|..|..|. ...||=|-++|++- +.+|.= +.-..|.=.-+-|.|.-.+|-
T Consensus 197 GSN~wav~g~~T~sG~~lL-------a~dPHl~~~~p~~w-y~~~L~-~p~~~v~G~~lpG~P~i~iG~N~~iAWg~T~~ 267 (750)
T g1cp9.1 197 DSNVWLVGKTKASGAKAIL-------LNGPQFGWFNPAYT-YGIGLH-GAGFNIVGNTPFAYPAILFGHNGHVSWGSTAG 267 (750)
T ss_dssp CCEEEEECTTTBSSSSEEE-------EEECCCCCBSSCSE-EEEEEE-ETTEEEEEEEETTCSSCCEEECSSEEEEEEEC
T ss_pred CCCEEECCCCCCCCCCEEE-------ECCCCCCHHHCEEE-EEEEEC-CCCCCEEECCCCCCEEEEEEECCCEEEEEECC
T ss_conf 7530111775478884366-------30565321003389-986542-68852121223421588985268616998326
Q ss_pred CCCCEEEEEEEEE
Q ss_conf 9991258985310
Q 001502 498 QAPMQTVWVSKVD 510 (1066)
Q Consensus 498 qpPmqTvW~skvd 510 (1066)
.+..+.+++-+.+
T Consensus 268 ~~D~~Dly~~~~~ 280 (750)
T g1cp9.1 268 FGDGVDIFAEQVS 280 (750)
T ss_dssp CBCCEEEEEEEEE
T ss_pred CCCCEEEEEEEEE
T ss_conf 7870236888830
No 10
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=2.97 E-value=1.3e+02 Score=6.07 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCCC-EEEEEEECC
Q ss_conf 03488831799741-038896127
Q 001502 130 WIPIHIVIPERPTE-CAVFNVIAD 152 (1066)
Q Consensus 130 wiPihIviPerPtE-~avfnv~ad 152 (1066)
+|+-+|++|+|..- -.+.+++|.
T Consensus 87 ~i~~aii~P~rT~h~~~vvEiIap 110 (131)
T d2vbua1 87 KIDGAIVVPKKTYHSSEIIEIIAP 110 (131)
T ss_dssp EEEEEEEEESCCSSCEEEEEEECS
T ss_pred CEEEEEEEECCCCCCCCEEEEECC
T ss_conf 588999984777899987999788
Done!