BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001503
(1065 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (Form B)
Length = 444
Score = 252 bits (643), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 159/457 (34%), Positives = 245/457 (53%), Gaps = 31/457 (6%)
Query: 16 GGANAYSINLENFSTRLKALYSHWNKHKSD---YWGSADVLAIATPPASEDLRYLKSSAL 72
G Y I+ F RL L + W K++ D + D + + + Y KS+AL
Sbjct: 1 GAMAEYEIDEITFHKRLGILLTSW-KNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTAL 59
Query: 73 NIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAK-TDDG 131
+ WLLGYEFP T+++ K +I L S KA++L K + ADV I + K ++
Sbjct: 60 HTWLLGYEFPSTLILLEKHRITILTSVNKANML--TKLAETKGAAADVNILKRTKDAEEN 117
Query: 132 VELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQ--NSGFQLSDVTNG 189
+L + I +R+ + VG ++ +G+ + W + S F L D + G
Sbjct: 118 KKLFEKIIEYIRATNKK-------VGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLG 170
Query: 190 LSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILE 249
L++ A+KD++E+ N+K A ++ VM+K V +L ID+ KK+THS D+ E I
Sbjct: 171 LAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDN 230
Query: 250 PTKAGVK-LRAENVDI-----CYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGS 303
K L+ ++D+ CY PI QSGG++DL+PSA ++D L+ G V++C++G
Sbjct: 231 EAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLH---GDVVLCSLGF 287
Query: 304 RYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREA 363
RY SYCSN+ R++L D Q K Y L+ + + G + Y L ++ +
Sbjct: 288 RYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKR 347
Query: 364 PELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQM 423
P+L PN ++ G GIG+EFRES L +NAKN RV++A M N+SIGF NL N PKN
Sbjct: 348 PDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINP--HPKNSQ 405
Query: 424 ---FSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSF 457
++LLL DT+ + ++P V T S KA D++Y F
Sbjct: 406 SKEYALLLIDTIQITRSDPIVFT-DSPKAQGDISYFF 441
>pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
pdb|3CB5|B Chain B, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
Length = 444
Score = 246 bits (627), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 157/457 (34%), Positives = 242/457 (52%), Gaps = 31/457 (6%)
Query: 16 GGANAYSINLENFSTRLKALYSHWNKHKSD---YWGSADVLAIATPPASEDLRYLKSSAL 72
G Y I+ F RL L + W K++ D + D + + + Y KS+AL
Sbjct: 1 GAXAEYEIDEITFHKRLGILLTSW-KNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTAL 59
Query: 73 NIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAK-TDDG 131
+ WLLGYEFP T+++ K +I L S KA+ L K + ADV I + K ++
Sbjct: 60 HTWLLGYEFPSTLILLEKHRITILTSVNKANXL--TKLAETKGAAADVNILKRTKDAEEN 117
Query: 132 VELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQ--NSGFQLSDVTNG 189
+L + I +R+ + VG ++ +G+ + W + S F L D + G
Sbjct: 118 KKLFEKIIEYIRATNKK-------VGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLG 170
Query: 190 LSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILE 249
L++ A+KD++E+ N+K A ++ V +K V +L ID+ KK+THS D+ E I
Sbjct: 171 LAKCLAIKDEQELANIKGASRVSVAVXSKYFVDELSTYIDQGKKITHSKFSDQXESLIDN 230
Query: 250 PTKAGVK-LRAENVDI-----CYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGS 303
K L+ ++D+ CY PI QSGG++DL+PSA ++D L+ G V++C++G
Sbjct: 231 EAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLH---GDVVLCSLGF 287
Query: 304 RYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREA 363
RY SYCSN+ R++L D Q K Y L+ + + G + Y L ++ +
Sbjct: 288 RYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKR 347
Query: 364 PELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQM 423
P+L PN ++ G GIG+EFRES L +NAKN RV++A N+SIGF NL N PKN
Sbjct: 348 PDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGXTLNLSIGFGNLINP--HPKNSQ 405
Query: 424 ---FSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSF 457
++LLL DT+ + ++P V T S KA D++Y F
Sbjct: 406 SKEYALLLIDTIQITRSDPIVFT-DSPKAQGDISYFF 441
>pdb|4IOY|X Chain X, Structure Of The Spt16 Middle Domain Reveals Functional
Features Of The Histone Chaperone Fact
Length = 285
Score = 205 bits (522), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 116/275 (42%), Positives = 164/275 (59%), Gaps = 9/275 (3%)
Query: 678 KLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATS-RPEERVDIMFGNIKHAFFQPAEKEM 736
+L +++RP +++P T+ H NG RF + R + R+DI+F NIK+ FQ + E+
Sbjct: 13 RLDQIFVRP--NPDTKRVPSTVFIHENGIRFQSPLRTDSRIDILFSNIKNLIFQSCKGEL 70
Query: 737 ITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNK 796
I ++H HL N I++G KK +DVQFY E D+ G R D DE+E+EQ ER ++
Sbjct: 71 IVVIHIHLKNPILMGKKKIQDVQFYREASDMSVDETGRFRRYGDEDELEQEQEERRKRAA 130
Query: 797 INMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIE 856
++ +F+ F + + + NGL L + RDLGF GVP++++ F +PT+ CLV+LIE
Sbjct: 131 LDKEFKYFADAIAE-----ASNGL-LTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIE 184
Query: 857 TPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRXXXXXXXXXXXXKEWLDTT 916
PFLV+ L E+EI LERV G KNFDM V+KDF K V K+WL
Sbjct: 185 PPFLVINLEEVEICILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQWLTDM 244
Query: 917 DIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEF 951
DI Y S +NLNW I+K++ DDP F DGGW F
Sbjct: 245 DIPYTVSTINLNWATIMKSLQDDPYQFFLDGGWNF 279
>pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIP|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIQ|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 467
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 235/466 (50%), Gaps = 39/466 (8%)
Query: 16 GGANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIW 75
G +I+ + F R++ LYS +N ++ GS + L ++ + Y K++ L+ W
Sbjct: 1 GHMEELNIDFDVFKKRIELLYSKYN----EFEGSPNSLLFVLGSSNAENPYQKTTILHNW 56
Query: 76 LLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELM 135
LL YEFP T++ + ++ + S KA L KD + + + + + + EL
Sbjct: 57 LLSYEFPATLIALVPGKVIIITSSAKAKHLQKAIDLFKDP-ESKITLELWQRNNKEPELN 115
Query: 136 DAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLE----TWADRLQNSGFQLSDVTNGLS 191
+F+ V + N G VG +++ +G+ + W ++ + F + D++ GLS
Sbjct: 116 KKLFDDVIALIN---SAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLS 172
Query: 192 ELFAVKD--QEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAI-- 247
+++ VKD ++ ++V G + ++ ++ +DEE K+T++ L D+ E I
Sbjct: 173 KVWEVKDVNEQAFLSVSSKGS---DKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDD 229
Query: 248 ------LEPTKAGV-----KLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSV 296
L P + + K + +D Y PI QSG FDLR SA S ++ LY
Sbjct: 230 VKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLY--GNGC 287
Query: 297 IICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAH-EAAIGALKPGNKVSAAYQAA 355
I+ + G RYN+YCSNI R+FLID + + Y+ LL E LKPG Y++
Sbjct: 288 ILASCGIRYNNYCSNITRTFLIDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESV 347
Query: 356 LSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKND-RVVKAKMIFNVSIGFQNLQN 414
+ +E+ PELVPN TK+ G+ IGLEFR+S LN KND R ++ FN+S GF NL++
Sbjct: 348 IEYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKD 407
Query: 415 QTNKPKNQMFSLLLADTVIV--GENNPEVVTCKSSKAVKDVAYSFN 458
+ ++L LADTV + E P +KA +++ FN
Sbjct: 408 SQSA---NNYALQLADTVQIPLDETEPPRFLTNYTKAKSQISFYFN 450
>pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIT|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 453
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 233/466 (50%), Gaps = 39/466 (8%)
Query: 16 GGANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIW 75
G +I+ + F R++ LYS +N ++ GS + L ++ + Y K++ L+ W
Sbjct: 1 GHXEELNIDFDVFKKRIELLYSKYN----EFEGSPNSLLFVLGSSNAENPYQKTTILHNW 56
Query: 76 LLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELM 135
LL YEFP T++ + ++ + S KA L KD + + + + + + EL
Sbjct: 57 LLSYEFPATLIALVPGKVIIITSSAKAKHLQKAIDLFKDP-ESKITLELWQRNNKEPELN 115
Query: 136 DAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLE----TWADRLQNSGFQLSDVTNGLS 191
+F+ V + N G VG +++ +G+ W ++ + F + D++ GLS
Sbjct: 116 KKLFDDVIALIN---SAGKTVGIPEKDSYQGKFXTEWNPVWEAAVKENEFNVIDISLGLS 172
Query: 192 ELFAVKD--QEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAI-- 247
+++ VKD ++ ++V G + ++ + +DEE K+T++ L D+ E I
Sbjct: 173 KVWEVKDVNEQAFLSVSSKGS---DKFXDLLSNEXVRAVDEELKITNAKLSDKIENKIDD 229
Query: 248 ------LEPTKAGV-----KLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSV 296
L P + + K + +D Y PI QSG FDLR SA S ++ LY
Sbjct: 230 VKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLY--GNGC 287
Query: 297 IICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAH-EAAIGALKPGNKVSAAYQAA 355
I+ + G RYN+YCSNI R+FLID + + Y+ LL E LKPG Y++
Sbjct: 288 ILASCGIRYNNYCSNITRTFLIDPSEEXANNYDFLLTLQKEIVTNILKPGRTPKEVYESV 347
Query: 356 LSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKND-RVVKAKMIFNVSIGFQNLQN 414
+ +E+ PELVPN TK+ G+ IGLEFR+S LN KND R ++ FN+S GF NL++
Sbjct: 348 IEYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKD 407
Query: 415 QTNKPKNQMFSLLLADTVIV--GENNPEVVTCKSSKAVKDVAYSFN 458
+ ++L LADTV + E P +KA +++ FN
Sbjct: 408 SQSA---NNYALQLADTVQIPLDETEPPRFLTNYTKAKSQISFYFN 450
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 28/232 (12%)
Query: 181 FQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLM 240
+ L ++ +SEL +KD++EI KKA + V + + KLE
Sbjct: 135 YSLHPISPVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEG-------------- 180
Query: 241 DEAEKAILEPTKAGVKLRAENVDICYPPIFQSG--GAF-DLRPSAASNDELLYYDSGSVI 297
++E+ + + +K D+ + PI SG GA RPS G V+
Sbjct: 181 -KSERELANRIEYMIKNEFGADDVSFEPIVASGPNGANPHHRPSHRK------IRKGDVV 233
Query: 298 ICAVGSRYNSYCSNIARSFLIDATPLQ-SKVYEVLLKAHEAAIGALKPGNKVSAAYQAAL 356
I G++Y YCS++ R+ ++ + KVYE++ +A E A+ + G A
Sbjct: 234 IFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATAR 293
Query: 357 SVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIG 408
++ + G G+G++ E ++ N +++K M+F + G
Sbjct: 294 GIISKYG--YGEYFIHRTGHGLGIDVHEEPY-ISPGNKKILKDGMVFTIEPG 342
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 119/269 (44%), Gaps = 44/269 (16%)
Query: 182 QLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEK------KVT 235
+ + + + +L +K +EEI ++KA + +K V+ +E + + ++ KV
Sbjct: 110 EFKKIDDVIKDLRIIKTKEEIEIIEKAC----EIADKAVMAAIEEITEGKREREVAAKVE 165
Query: 236 HSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGS 295
+ + M+ AEK + I SG L AS+ + + G
Sbjct: 166 YLMKMNGAEKP------------------AFDTIIASGHRSALPHGVASDKRI---ERGD 204
Query: 296 VIICAVGSRYNSYCSNIARSFLIDA-TPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQA 354
+++ +G+ YN Y S+I R+ ++ + Q ++YE++L+A + A+ A KPG
Sbjct: 205 LVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSI 264
Query: 355 ALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQN 414
A +++ S G G+GLE E ++ ++ V+K M+ + G
Sbjct: 265 AREIIKEYG--YGDYFIHSLGHGVGLEIHEWP-RISQYDETVLKEGMVITIEPGIYI--- 318
Query: 415 QTNKPKNQMFSLLLADTVIVGENNPEVVT 443
PK + + + DTV++ EN + +T
Sbjct: 319 ----PK--LGGVRIEDTVLITENGAKRLT 341
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 24/230 (10%)
Query: 181 FQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLM 240
F +++ + EL +KD+EE+ ++ A + V +I+ L + + E + LL+
Sbjct: 116 FTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLI 175
Query: 241 DEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICA 300
E I + PI SG P + + G +II
Sbjct: 176 RELSDGI-----------------AFEPIVASG-ENAANPHHEPGERKI--RKGDIIILD 215
Query: 301 VGSRYNSYCSNIARSF-LIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVV 359
G+R+ YCS+I R+ L + K+YEV+ A E+A A++ G K A V+
Sbjct: 216 YGARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVI 275
Query: 360 EREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGF 409
+ G G+GL+ E + + ++K M F + G
Sbjct: 276 SKAG--YGEYFIHRTGHGLGLDVHEEPY-IGPDGEVILKNGMTFTIEPGI 322
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 24/201 (11%)
Query: 246 AILEPTKAGVKLRAENVD-ICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSR 304
A+LE T +R E + + + I SG L P ++D+++ + G VI+ G+
Sbjct: 171 ALLEYT-----MRKEGAEGVAFDTIVASGCRSAL-PHGKASDKVV--ERGDVIVIDFGAT 222
Query: 305 YNSYCSNIARSFLIDATPLQSK-VYEVLLKAHEAAIGALKPGNKVSAAYQAALSVV-ERE 362
Y +YC++I R I + K V+ ++L+A E A+ K G A + E+
Sbjct: 223 YENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIREKG 282
Query: 363 APELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQ 422
E + S G GIGLE E G ++ +ND + ++F V G L+ +
Sbjct: 283 YGEFFGH---SLGHGIGLEVHE-GPAISFRNDSPLPENVVFTVEPGIY-LEGK------- 330
Query: 423 MFSLLLADTVIVGENNPEVVT 443
F + + + V++ E E++T
Sbjct: 331 -FGIRIEEDVVLKEQGCEILT 350
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 103/235 (43%), Gaps = 35/235 (14%)
Query: 182 QLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEK------KVT 235
+ V + + ++ +K ++EI ++KA + +K V+ +E + + +K KV
Sbjct: 113 EFKKVDDVIRDMRIIKSEKEIKIIEKAC----EIADKAVMAAIEEITEGKKEREVAAKVE 168
Query: 236 HSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGS 295
+ + M+ AEK + I SG L AS+ + + G
Sbjct: 169 YLMKMNGAEKP------------------AFDTIIASGYRSALPHGVASDKRI---ERGD 207
Query: 296 VIICAVGSRYNSYCSNIARSFLIDA-TPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQA 354
+++ +G+ Y Y S+I R+ ++ + Q ++YE++L+A + A+ + KPG
Sbjct: 208 LVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSI 267
Query: 355 ALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGF 409
A +++ S G G+GLE E ++ ++ V++ M+ + G
Sbjct: 268 ARNIIAEYG--YGEYFNHSLGHGVGLEVHEWP-RVSQYDETVLREGMVITIEPGI 319
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/178 (17%), Positives = 76/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ A G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDAT--PLQSKVYEVLLKAHEAAIGALKPGNKVSAA 351
G ++ V + N Y ++ SF++ + P++ KV +V A E AI +KPG K+S
Sbjct: 87 GDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNI 146
Query: 352 YQAALSVVEREAPELVPNLTKSAGTGIGLEFRES 385
+A + + +++ NLT G G+GL E+
Sbjct: 147 GKAVHNTARQNDLKVIKNLT---GHGVGLSLHEA 177
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 76/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V+ G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 76/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V+ G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 255 GDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 314
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 315 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSAWLGLDVHDVGV-YGQDRSR 373
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V G + + + + + D +++ E E +T K +++
Sbjct: 374 ILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 431
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMAGLSHWLGLDVHDVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y +I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVADVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 242 EAEKAILEPTKAGVK---LRAENVDICYPPIFQSGGAFDLRPSAASNDELLYY------- 291
EA + +++ K G+K L + CY ++ + N +L+Y
Sbjct: 205 EAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPN 264
Query: 292 ----DSGSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPG 345
+G + + +G Y + S+I SF + T Q VYE +L++ A +GA+KPG
Sbjct: 265 DRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPG 324
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/178 (16%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 294 GSVIICAVGSRYNSYCSNIARSFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGN----- 346
G +++ G Y Y I R+F ++ T Q ++Y+++L++ E ++ +PG
Sbjct: 254 GDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEV 313
Query: 347 -----KVSAAYQAALSVVEREAPELV------PNLTKSAGTGIGLEFRESGLNLNAKNDR 395
++ + L +++ + EL+ P +GL+ + G+ R
Sbjct: 314 TGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV-YGQDRSR 372
Query: 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453
+++ M+ V G + + + + + D +++ E E +T K +++
Sbjct: 373 ILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEI 430
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 294 GSVIICAVGSRYN-SYCSNIARSFLI-DATPLQSKVYEVLLKAHEAAIGALKPGNKVSAA 351
G +++ +G Y Y S+ R++ I D +P ++ Y L +A AA+ A++PG +
Sbjct: 228 GDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQV 287
Query: 352 YQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGF 409
AA V+ L G GIGL E + A N+ + A M F++ G
Sbjct: 288 DAAARDVLADAG--LAEYFVHRTGHGIGLCVHEEPY-IVAGNELPLVAGMAFSIEPGI 342
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 275 AFDLRPSAASNDELLYYD-------SGSVIICAVGSRYNSYCSNIARSFLIDAT--PLQS 325
AF+ ++ N +L+Y+ +G +++ +G++ + Y ++I+ +F + T Q
Sbjct: 224 AFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQK 283
Query: 326 KVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVE---------REAPELVPNLTKSAGT 376
++Y ++L A + +KPG K +A + A V+ +E EL
Sbjct: 284 QIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKYYYHGVSH 343
Query: 377 GIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGF 409
+GL+ + G DRV++ + + G
Sbjct: 344 FLGLDTHDVG----TYKDRVLEEGXVITIEPGL 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,015,565
Number of Sequences: 62578
Number of extensions: 1161689
Number of successful extensions: 2676
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2643
Number of HSP's gapped (non-prelim): 26
length of query: 1065
length of database: 14,973,337
effective HSP length: 109
effective length of query: 956
effective length of database: 8,152,335
effective search space: 7793632260
effective search space used: 7793632260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)