Query 001503
Match_columns 1065
No_of_seqs 382 out of 1848
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:27:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1189 Global transcriptional 100.0 7E-246 1E-250 2074.9 62.8 943 55-1038 2-956 (960)
2 COG5406 Nucleosome binding fac 100.0 4E-215 8E-220 1784.4 56.2 975 18-1028 1-996 (1001)
3 PF08644 SPT16: FACT complex s 100.0 1.7E-58 3.6E-63 459.4 16.6 152 554-708 1-152 (152)
4 PRK09795 aminopeptidase; Provi 100.0 1.3E-55 2.9E-60 507.5 38.5 350 30-452 2-357 (361)
5 TIGR02993 ectoine_eutD ectoine 100.0 7.4E-53 1.6E-57 489.1 37.4 373 21-452 4-389 (391)
6 COG0006 PepP Xaa-Pro aminopept 100.0 6.3E-51 1.4E-55 472.5 38.6 369 23-453 5-383 (384)
7 PRK14575 putative peptidase; P 100.0 1.4E-50 2.9E-55 472.0 36.9 362 28-451 9-403 (406)
8 PRK10879 proline aminopeptidas 100.0 3.5E-50 7.6E-55 471.9 37.2 389 23-458 1-433 (438)
9 PRK14576 putative endopeptidas 100.0 1.5E-48 3.3E-53 454.6 38.7 361 30-451 11-402 (405)
10 cd01091 CDC68-like Related to 100.0 9.7E-48 2.1E-52 418.3 24.7 240 202-444 1-243 (243)
11 PRK15173 peptidase; Provisiona 100.0 1.4E-45 2.9E-50 417.7 31.1 280 133-452 39-321 (323)
12 PRK13607 proline dipeptidase; 100.0 3E-43 6.5E-48 412.7 29.0 373 27-444 7-438 (443)
13 KOG2414 Putative Xaa-Pro amino 100.0 9E-43 2E-47 382.0 25.6 394 21-458 60-485 (488)
14 PRK07281 methionine aminopepti 100.0 1.8E-41 4E-46 376.3 26.5 240 194-448 2-282 (286)
15 PRK12897 methionine aminopepti 100.0 1.1E-40 2.5E-45 364.6 24.8 233 194-444 2-247 (248)
16 PRK12318 methionine aminopepti 100.0 2.2E-40 4.8E-45 369.5 26.5 244 188-448 34-291 (291)
17 TIGR00500 met_pdase_I methioni 100.0 5.5E-40 1.2E-44 358.8 26.3 232 195-444 2-246 (247)
18 PRK05716 methionine aminopepti 100.0 1.1E-39 2.4E-44 357.3 26.0 238 193-449 2-252 (252)
19 PRK12896 methionine aminopepti 100.0 4.4E-39 9.4E-44 353.1 25.7 235 192-444 6-254 (255)
20 cd01090 Creatinase Creatine am 100.0 5.7E-39 1.2E-43 346.9 24.3 221 202-443 1-227 (228)
21 PLN03158 methionine aminopepti 100.0 1.8E-38 3.9E-43 365.1 27.3 249 189-455 130-391 (396)
22 cd01087 Prolidase Prolidase. E 100.0 1.9E-38 4.1E-43 345.9 24.2 222 202-444 1-243 (243)
23 cd01092 APP-like Similar to Pr 100.0 1.6E-36 3.5E-41 321.8 23.7 207 202-439 1-208 (208)
24 KOG2737 Putative metallopeptid 100.0 2.2E-36 4.8E-41 328.3 21.0 397 21-458 10-479 (492)
25 cd01086 MetAP1 Methionine Amin 100.0 6.3E-36 1.4E-40 324.8 24.6 225 202-444 1-238 (238)
26 PF00557 Peptidase_M24: Metall 100.0 8.6E-35 1.9E-39 309.0 22.9 204 203-436 1-207 (207)
27 cd01085 APP X-Prolyl Aminopept 100.0 2.2E-34 4.7E-39 310.3 23.1 206 204-441 6-221 (224)
28 KOG0526 Nucleosome-binding fac 100.0 5.8E-34 1.3E-38 320.4 19.8 206 697-922 216-432 (615)
29 cd01066 APP_MetAP A family inc 100.0 1.3E-32 2.8E-37 289.2 23.0 206 202-439 1-207 (207)
30 cd01089 PA2G4-like Related to 100.0 9.9E-31 2.1E-35 282.8 22.2 216 202-444 1-228 (228)
31 COG0024 Map Methionine aminope 100.0 1.6E-29 3.5E-34 272.5 25.0 233 195-444 4-251 (255)
32 COG5165 POB3 Nucleosome-bindin 100.0 1.2E-29 2.6E-34 273.4 14.8 205 697-921 225-440 (508)
33 KOG2738 Putative methionine am 100.0 1.3E-28 2.9E-33 261.1 21.4 241 191-448 111-363 (369)
34 KOG2413 Xaa-Pro aminopeptidase 100.0 5.2E-28 1.1E-32 278.8 19.0 372 22-462 168-568 (606)
35 PTZ00053 methionine aminopepti 99.9 7.5E-27 1.6E-31 271.1 21.8 199 192-410 148-360 (470)
36 TIGR00495 crvDNA_42K 42K curve 99.9 7.1E-26 1.5E-30 261.5 26.3 202 194-410 11-232 (389)
37 PRK08671 methionine aminopepti 99.9 3.2E-26 7E-31 256.1 22.1 183 201-410 1-189 (291)
38 TIGR00501 met_pdase_II methion 99.9 1.1E-25 2.4E-30 252.2 21.1 185 199-410 2-192 (295)
39 cd01088 MetAP2 Methionine Amin 99.9 3.4E-25 7.4E-30 247.9 19.9 182 202-410 1-188 (291)
40 PF14826 FACT-Spt16_Nlob: FACT 99.9 1.2E-25 2.7E-30 229.8 4.4 159 23-189 1-162 (163)
41 PF08512 Rtt106: Histone chape 99.9 1.2E-22 2.7E-27 189.8 8.1 90 833-922 4-94 (95)
42 PF03531 SSrecog: Structure-sp 99.2 1.2E-11 2.7E-16 131.6 6.6 65 697-763 151-217 (222)
43 PF01321 Creatinase_N: Creatin 99.0 8.6E-10 1.9E-14 108.2 9.8 128 31-196 1-132 (132)
44 KOG2775 Metallopeptidase [Gene 98.9 3.5E-08 7.7E-13 106.5 16.6 191 198-407 81-284 (397)
45 KOG2776 Metallopeptidase [Gene 98.8 3.2E-08 6.9E-13 109.6 13.9 158 195-363 14-181 (398)
46 KOG2413 Xaa-Pro aminopeptidase 96.8 0.0045 9.7E-08 74.0 9.7 133 30-187 10-143 (606)
47 KOG1832 HIV-1 Vpr-binding prot 96.8 0.0009 2E-08 81.5 3.5 18 560-577 891-908 (1516)
48 PLN03158 methionine aminopepti 96.7 0.0079 1.7E-07 70.8 10.6 112 307-435 126-246 (396)
49 PF05195 AMP_N: Aminopeptidase 96.6 0.0014 3.1E-08 65.6 3.2 78 23-109 1-85 (134)
50 cd01086 MetAP1 Methionine Amin 96.6 0.016 3.4E-07 63.3 11.6 100 322-436 2-105 (238)
51 PF04931 DNA_pol_phi: DNA poly 96.3 0.0031 6.7E-08 80.7 4.6 6 138-143 42-47 (784)
52 PRK05716 methionine aminopepti 96.1 0.038 8.3E-07 60.8 11.0 98 322-435 12-114 (252)
53 cd01088 MetAP2 Methionine Amin 95.8 0.05 1.1E-06 61.6 10.9 96 322-435 2-99 (291)
54 KOG1832 HIV-1 Vpr-binding prot 95.7 0.0062 1.3E-07 74.6 3.0 41 865-915 1324-1368(1516)
55 PRK12896 methionine aminopepti 95.7 0.065 1.4E-06 59.1 10.7 109 312-435 4-119 (255)
56 KOG3064 RNA-binding nuclear pr 95.6 0.0082 1.8E-07 64.6 3.1 44 829-873 30-73 (303)
57 KOG2738 Putative methionine am 95.5 0.051 1.1E-06 60.1 8.6 99 321-436 122-226 (369)
58 COG0024 Map Methionine aminope 95.4 0.098 2.1E-06 57.9 10.6 102 322-435 12-115 (255)
59 PF05764 YL1: YL1 nuclear prot 95.0 0.054 1.2E-06 59.6 7.1 7 968-974 41-47 (240)
60 KOG1189 Global transcriptional 94.7 0.021 4.6E-07 69.4 3.1 101 205-319 259-367 (960)
61 TIGR00495 crvDNA_42K 42K curve 94.4 0.29 6.2E-06 57.8 11.7 104 323-436 21-130 (389)
62 TIGR00501 met_pdase_II methion 93.5 0.63 1.4E-05 52.9 11.8 96 323-435 7-103 (295)
63 PRK08671 methionine aminopepti 93.3 0.7 1.5E-05 52.4 11.8 96 323-435 4-100 (291)
64 PF10446 DUF2457: Protein of u 93.1 0.03 6.5E-07 65.0 0.4 19 908-928 11-29 (458)
65 KOG3064 RNA-binding nuclear pr 92.6 0.052 1.1E-06 58.6 1.4 16 795-810 80-95 (303)
66 TIGR00500 met_pdase_I methioni 92.2 1.1 2.4E-05 49.3 11.2 99 323-435 11-112 (247)
67 PTZ00053 methionine aminopepti 92.2 0.89 1.9E-05 54.7 11.1 94 324-434 161-261 (470)
68 PF00557 Peptidase_M24: Metall 92.0 0.94 2E-05 48.2 10.1 96 323-434 2-98 (207)
69 cd01089 PA2G4-like Related to 91.9 1.5 3.2E-05 47.8 11.7 101 323-435 3-111 (228)
70 PF04147 Nop14: Nop14-like fam 91.0 0.16 3.5E-06 65.5 3.5 13 779-791 271-283 (840)
71 KOG0526 Nucleosome-binding fac 90.7 0.16 3.5E-06 60.0 2.8 33 923-955 402-434 (615)
72 PRK12897 methionine aminopepti 90.6 2.3 5E-05 46.9 11.7 98 323-435 12-113 (248)
73 cd01087 Prolidase Prolidase. E 90.5 2.3 4.9E-05 46.7 11.5 94 323-434 3-97 (243)
74 cd01092 APP-like Similar to Pr 90.4 2.4 5.1E-05 44.9 11.2 98 323-436 3-100 (208)
75 PF06524 NOA36: NOA36 protein; 90.2 0.32 7E-06 52.8 4.2 25 862-886 121-147 (314)
76 PF04147 Nop14: Nop14-like fam 90.0 0.27 5.9E-06 63.5 4.3 16 793-808 210-225 (840)
77 KOG2038 CAATT-binding transcri 89.9 0.15 3.3E-06 62.6 1.7 19 322-340 296-314 (988)
78 COG5406 Nucleosome binding fac 89.1 0.23 4.9E-06 59.6 2.3 18 232-249 320-337 (1001)
79 KOG2038 CAATT-binding transcri 88.4 0.25 5.5E-06 60.7 2.1 31 718-752 695-731 (988)
80 cd01066 APP_MetAP A family inc 87.9 3.5 7.6E-05 43.0 10.3 97 323-436 3-99 (207)
81 PTZ00007 (NAP-L) nucleosome as 87.7 2.1 4.5E-05 49.5 8.8 94 782-890 54-152 (337)
82 PRK12318 methionine aminopepti 84.4 8.6 0.00019 43.7 11.7 107 316-435 41-154 (291)
83 PF02724 CDC45: CDC45-like pro 84.3 0.22 4.7E-06 62.2 -1.3 21 882-903 74-94 (622)
84 PF05285 SDA1: SDA1; InterPro 83.6 0.77 1.7E-05 52.9 2.9 17 898-916 65-81 (324)
85 KOG0943 Predicted ubiquitin-pr 83.2 0.77 1.7E-05 58.5 2.7 30 287-318 745-784 (3015)
86 PF13104 DUF3956: Protein of u 83.1 1.4 3.1E-05 34.4 3.1 27 848-874 2-28 (45)
87 PRK07281 methionine aminopepti 82.8 11 0.00024 42.8 11.6 83 323-409 12-101 (286)
88 KOG0943 Predicted ubiquitin-pr 82.2 0.92 2E-05 57.8 2.8 37 840-876 1556-1593(3015)
89 PF06524 NOA36: NOA36 protein; 81.6 1.5 3.4E-05 47.8 3.9 12 844-855 209-220 (314)
90 PF09026 CENP-B_dimeris: Centr 81.3 0.47 1E-05 44.2 0.0 8 1012-1019 40-47 (101)
91 KOG2775 Metallopeptidase [Gene 80.6 5.5 0.00012 44.6 7.8 86 323-410 87-174 (397)
92 cd01090 Creatinase Creatine am 80.6 17 0.00036 39.7 11.8 99 323-435 3-105 (228)
93 KOG2776 Metallopeptidase [Gene 79.9 6.3 0.00014 45.3 8.1 101 324-436 24-132 (398)
94 PRK09795 aminopeptidase; Provi 79.2 15 0.00032 43.0 11.4 96 324-435 136-231 (361)
95 cd01085 APP X-Prolyl Aminopept 78.9 14 0.0003 40.4 10.4 98 323-434 5-106 (224)
96 PF05764 YL1: YL1 nuclear prot 77.6 2.3 5E-05 47.0 3.9 8 930-937 11-18 (240)
97 PF02724 CDC45: CDC45-like pro 77.3 0.75 1.6E-05 57.6 -0.0 21 896-916 28-48 (622)
98 PRK10879 proline aminopeptidas 72.4 26 0.00056 42.2 11.3 96 323-434 181-276 (438)
99 COG5129 MAK16 Nuclear protein 72.1 1.9 4.1E-05 45.9 1.4 40 832-872 32-71 (303)
100 PRK14576 putative endopeptidas 71.2 29 0.00062 41.4 11.2 96 323-435 185-280 (405)
101 PF03115 Astro_capsid: Astrovi 69.9 1.5 3.2E-05 55.8 0.0 13 233-245 98-110 (787)
102 PHA02664 hypothetical protein; 68.8 6.3 0.00014 44.2 4.5 28 570-597 179-214 (534)
103 PRK15173 peptidase; Provisiona 68.1 46 0.00099 38.4 11.7 96 323-435 103-198 (323)
104 PHA02664 hypothetical protein; 66.1 4.3 9.3E-05 45.5 2.6 17 424-440 209-226 (534)
105 KOG2773 Apoptosis antagonizing 65.2 3.8 8.2E-05 48.3 2.1 10 1013-1022 139-148 (483)
106 COG0006 PepP Xaa-Pro aminopept 63.8 33 0.00071 40.4 9.7 98 322-435 161-258 (384)
107 PRK14575 putative peptidase; P 63.6 50 0.0011 39.4 11.2 96 323-435 186-281 (406)
108 KOG2393 Transcription initiati 61.8 16 0.00036 44.1 6.5 34 905-945 175-209 (555)
109 PF03344 Daxx: Daxx Family; I 60.2 2.9 6.3E-05 52.9 0.0 15 794-808 381-395 (713)
110 PF08567 TFIIH_BTF_p62_N: TFII 59.0 20 0.00044 32.7 5.3 62 692-756 9-74 (79)
111 KOG2141 Protein involved in hi 58.6 6.4 0.00014 48.9 2.5 7 768-774 109-115 (822)
112 KOG0262 RNA polymerase I, larg 58.3 6.5 0.00014 51.3 2.5 52 857-908 1206-1272(1640)
113 PF08553 VID27: VID27 cytoplas 58.1 7.9 0.00017 49.6 3.3 31 905-935 337-367 (794)
114 KOG0127 Nucleolar protein fibr 58.1 6.4 0.00014 47.3 2.3 6 724-729 32-37 (678)
115 KOG0127 Nucleolar protein fibr 56.4 6.5 0.00014 47.2 2.0 15 722-736 97-111 (678)
116 KOG0262 RNA polymerase I, larg 55.5 7.5 0.00016 50.8 2.4 26 534-559 880-906 (1640)
117 KOG1834 Calsyntenin [Extracell 55.4 6.1 0.00013 48.3 1.6 22 927-948 870-891 (952)
118 PF09073 BUD22: BUD22; InterP 55.4 5.7 0.00012 47.7 1.4 12 905-916 116-127 (432)
119 KOG1980 Uncharacterized conser 54.9 7.6 0.00016 47.6 2.3 23 495-517 49-71 (754)
120 KOG0699 Serine/threonine prote 54.8 8 0.00017 44.3 2.3 20 568-587 18-37 (542)
121 PF11705 RNA_pol_3_Rpc31: DNA- 54.6 11 0.00024 41.5 3.3 10 799-808 56-65 (233)
122 KOG2141 Protein involved in hi 54.1 6.6 0.00014 48.7 1.6 10 907-916 189-198 (822)
123 PF03344 Daxx: Daxx Family; I 53.4 4.4 9.5E-05 51.3 0.0 17 858-874 367-383 (713)
124 KOG2051 Nonsense-mediated mRNA 52.9 17 0.00038 47.0 5.0 44 870-914 806-852 (1128)
125 KOG1991 Nuclear transport rece 51.7 9.3 0.0002 49.1 2.4 20 871-890 809-828 (1010)
126 PF04050 Upf2: Up-frameshift s 49.8 7.4 0.00016 40.7 1.0 6 1017-1022 64-69 (170)
127 KOG1834 Calsyntenin [Extracell 49.4 8.8 0.00019 47.0 1.6 35 727-761 616-655 (952)
128 PF03115 Astro_capsid: Astrovi 48.9 5.7 0.00012 50.6 0.0 10 295-304 243-252 (787)
129 COG5593 Nucleic-acid-binding p 46.1 6.2 0.00013 47.2 -0.3 14 796-809 591-604 (821)
130 PF04889 Cwf_Cwc_15: Cwf15/Cwc 45.2 12 0.00025 41.6 1.7 7 1014-1020 151-157 (244)
131 cd01091 CDC68-like Related to 44.6 1.4E+02 0.0031 32.9 10.1 97 205-319 121-233 (243)
132 PF05470 eIF-3c_N: Eukaryotic 43.7 12 0.00026 46.7 1.7 38 897-943 101-138 (595)
133 COG5165 POB3 Nucleosome-bindin 43.6 14 0.0003 42.4 2.0 71 856-931 34-108 (508)
134 PTZ00415 transmission-blocking 42.4 18 0.00039 48.9 2.9 11 878-888 123-133 (2849)
135 PF03066 Nucleoplasmin: Nucleo 42.0 8.5 0.00018 39.5 0.0 6 841-846 17-22 (149)
136 KOG1991 Nuclear transport rece 40.0 17 0.00037 46.9 2.1 13 538-550 509-521 (1010)
137 PF06213 CobT: Cobalamin biosy 39.5 28 0.00061 39.4 3.6 10 906-915 167-176 (282)
138 TIGR02993 ectoine_eutD ectoine 39.1 1.9E+02 0.004 34.3 10.6 99 205-319 272-373 (391)
139 PF07305 DUF1454: Protein of u 37.7 1.5E+02 0.0033 31.5 8.2 74 321-408 114-187 (200)
140 KOG3241 Uncharacterized conser 37.0 21 0.00045 37.2 1.9 6 702-707 16-21 (227)
141 KOG0772 Uncharacterized conser 35.2 24 0.00053 42.4 2.3 16 873-888 25-40 (641)
142 COG5593 Nucleic-acid-binding p 35.0 40 0.00088 40.7 4.0 9 839-847 611-619 (821)
143 KOG1354 Serine/threonine prote 34.5 61 0.0013 37.5 5.1 61 538-602 123-193 (433)
144 PF11705 RNA_pol_3_Rpc31: DNA- 34.3 32 0.0007 37.8 3.0 16 793-808 53-68 (233)
145 KOG0772 Uncharacterized conser 33.5 24 0.00053 42.4 1.9 7 871-877 43-49 (641)
146 PF03985 Paf1: Paf1 ; InterPr 32.6 44 0.00095 40.3 4.0 12 731-742 294-305 (436)
147 KOG2985 Uncharacterized conser 32.5 76 0.0016 35.0 5.2 12 1041-1052 278-289 (306)
148 KOG3540 Beta amyloid precursor 32.1 33 0.00073 40.9 2.7 7 870-876 138-144 (615)
149 PF06213 CobT: Cobalamin biosy 31.2 50 0.0011 37.4 3.9 6 906-911 182-187 (282)
150 PRK13607 proline dipeptidase; 30.8 2.2E+02 0.0048 34.4 9.6 94 323-433 169-263 (443)
151 KOG2652 RNA polymerase II tran 30.6 40 0.00087 38.8 2.9 9 641-649 36-44 (348)
152 KOG4364 Chromatin assembly fac 29.6 34 0.00073 42.4 2.3 12 910-921 484-495 (811)
153 KOG2393 Transcription initiati 29.3 45 0.00098 40.5 3.2 25 779-805 174-198 (555)
154 KOG1980 Uncharacterized conser 29.1 27 0.00058 43.1 1.4 36 639-674 45-80 (754)
155 KOG2652 RNA polymerase II tran 29.0 40 0.00087 38.8 2.6 15 858-872 202-216 (348)
156 KOG2321 WD40 repeat protein [G 28.6 36 0.00078 41.6 2.2 15 396-410 212-226 (703)
157 PF05477 SURF2: Surfeit locus 27.9 1E+02 0.0022 34.4 5.4 25 683-709 25-52 (244)
158 COG4547 CobT Cobalamin biosynt 27.5 45 0.00098 39.7 2.7 7 745-751 46-52 (620)
159 KOG2051 Nonsense-mediated mRNA 26.4 64 0.0014 42.2 4.0 15 163-177 99-113 (1128)
160 PF03985 Paf1: Paf1 ; InterPr 24.7 64 0.0014 38.9 3.5 9 640-648 157-165 (436)
161 PTZ00007 (NAP-L) nucleosome as 24.3 68 0.0015 37.3 3.5 25 735-760 143-167 (337)
162 KOG2270 Serine/threonine prote 24.2 21 0.00046 41.9 -0.6 10 560-569 141-150 (520)
163 KOG3130 Uncharacterized conser 23.9 44 0.00094 39.1 1.7 20 633-652 91-110 (514)
164 PF04006 Mpp10: Mpp10 protein; 23.5 85 0.0018 39.5 4.4 14 1014-1027 190-203 (600)
165 PF14470 bPH_3: Bacterial PH d 22.9 3E+02 0.0065 25.0 7.0 70 839-914 21-95 (96)
166 KOG2147 Nucleolar protein invo 22.6 54 0.0012 41.3 2.3 55 944-1011 315-369 (823)
167 KOG3130 Uncharacterized conser 22.5 58 0.0012 38.1 2.3 9 562-570 46-54 (514)
168 COG5167 VID27 Protein involved 21.3 1.1E+02 0.0023 37.3 4.3 50 840-889 245-301 (776)
169 KOG1060 Vesicle coat complex A 21.3 88 0.0019 39.9 3.7 61 953-1014 650-710 (968)
170 KOG2270 Serine/threonine prote 20.4 25 0.00054 41.4 -1.0 6 400-405 143-148 (520)
No 1
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-246 Score=2074.93 Aligned_cols=943 Identities=50% Similarity=0.826 Sum_probs=861.7
Q ss_pred EeCCCCCCcccccccccceEEEcCCcCCcEEEEEECCcEEEEEeCCccchHHHHHhh---ccccCCcEEEEEeccccCcc
Q 001503 55 IATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRS---AKDAVGADVVIHVKAKTDDG 131 (1065)
Q Consensus 55 i~~g~~~~~~~Y~ks~al~~wLtGye~p~tlllit~~~~~ll~s~kK~~~le~~~~~---~~~~~~vei~~~~kd~~~~~ 131 (1065)
++.|.++++++|+|++||+.||+||++|+|+||++++.++++++.+|+.+|..+... ..+.+.+.++++.+ ..++.
T Consensus 2 v~~G~s~dd~~Y~KssAL~~WLlGYEfpdTilv~~~~~i~iltSkkKa~~l~~~~~~~~~~~~~~~v~llvR~k-~d~n~ 80 (960)
T KOG1189|consen 2 VVVGVSEDDNPYQKSSALFTWLLGYEFPDTILVLCKDKIYILTSKKKAEFLQKVTNLAQSSEGKPTVNLLVRDK-NDDNK 80 (960)
T ss_pred eeecccccccchhHHHHHHHHHhccccCceEEEEecCcEEEEecchhHHHHHhhcccccCcccCcceEEEeccc-Ccccc
Confidence 444554678999999999999999999999999999999999999999999886432 12345677777733 23333
Q ss_pred ccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHHHHhhcCCCeEEeccCCcccccccCCHHHHHHHHHHHHH
Q 001503 132 VELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYL 211 (1065)
Q Consensus 132 ~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~~~l~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~i 211 (1065)
.+|++|+++|+. ++++||+..++.++|.|+..|..+|...++..+|++..|+.+.+||++.||++||+|+++
T Consensus 81 -~~fdkii~~ik~-------~gk~vGvf~ke~~~G~F~~~W~~~l~~~~fn~vDis~~ls~l~avKDd~Ei~~irksa~~ 152 (960)
T KOG1189|consen 81 -GLFDKIIKAIKS-------AGKKVGVFAKEKFQGEFMESWNKRLEAGGFNKVDISLGLSKLFAVKDDEEIANIRKSAAA 152 (960)
T ss_pred -ccHHHHHHHHHh-------cCCeeeeecccccchhHHHHHHHHhhhcCCceeehhhhhhhheeeccHHHHHHHHHHHHH
Confidence 889999999993 789999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCCccCCcccccc
Q 001503 212 TYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYY 291 (1065)
Q Consensus 212 a~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~ 291 (1065)
+.++|.+++.+.+..+||++..|||+.|+..++.++.+ .++..++++..++|||+||+|||++|+|+|++.++++.|
T Consensus 153 s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~-~k~s~~l~~~~~d~cY~PIiqSGg~ydlk~sa~s~~~~L-- 229 (960)
T KOG1189|consen 153 SSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIED-KKYSPGLDPDLLDMCYPPIIQSGGKYDLKPSAVSDDNHL-- 229 (960)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc-cccCcccCccccccccChhhhcCCccccccccccccccc--
Confidence 99999999999999999999999999999999999976 366667888889999999999999999999999999999
Q ss_pred cCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCC
Q 001503 292 DSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLT 371 (1065)
Q Consensus 292 G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~ 371 (1065)
+ +|+|++|+||++||||++|||+|+|+.+|+++|++++.||++++++||||++.++||.++.+++++.+|++.+.|+
T Consensus 230 ~---~I~cs~G~RynsYCSNv~RT~Lidpssemq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~ 306 (960)
T KOG1189|consen 230 H---VILCSLGIRYNSYCSNVSRTYLIDPSSEMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVPNFT 306 (960)
T ss_pred c---eEEeeccchhhhhhccccceeeecchHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhhhhh
Confidence 3 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeccccccCCccccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeCCCc-eecCccCcccH
Q 001503 372 KSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNP-EVVTCKSSKAV 450 (1065)
Q Consensus 372 h~~GHgIGle~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~-evLT~~~pk~l 450 (1065)
+++|+||||+|+|+.++|+++|+++|++||||+|..|+.+|+++.. .+.|++.|.|||+|++++| ++||. +++..
T Consensus 307 k~lG~~iGlEFREssl~inaKnd~~lk~gmvFni~lGf~nl~n~~~---~~~yaL~l~DTvlv~e~~p~~vLT~-~~K~~ 382 (960)
T KOG1189|consen 307 KNLGFGIGLEFRESSLVINAKNDRVLKKGMVFNISLGFSNLTNPES---KNSYALLLSDTVLVGEDPPAEVLTD-SAKAV 382 (960)
T ss_pred hhcccccceeeecccccccccchhhhccCcEEEEeeccccccCccc---ccchhhhccceeeecCCCcchhhcc-cchhh
Confidence 9999999999999999999999999999999999999999998764 2449999999999999998 99996 99999
Q ss_pred hhhccccCCchhh-hc--c--cccccccCCcccccccccccCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 001503 451 KDVAYSFNEDEEE-EE--R--PKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETGRRLAGGGSGAG 525 (1065)
Q Consensus 451 ~~I~~~~~d~~~~-~~--~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~r~~~Q~eL~~~~~~e~~~r~~~~~~~~~ 525 (1065)
.+|+|+|++++++ +. + ..+.++++.++++ +.+++|++. ++|++|++|||||++|+++|+++||+++++.
T Consensus 383 ~dv~~~f~~eeeE~~~~~k~~~~~~~~r~~r~a~-l~~k~R~e~---~~ee~RKehQkeLa~qlnee~~~Rls~~s~~-- 456 (960)
T KOG1189|consen 383 KDVSYFFKDEEEEEELEKKDPATKVLGRGTRTAL-LTDKTRNET---SAEEKRKEHQKELADQLNEEALRRLSNQSGD-- 456 (960)
T ss_pred cccceeeccchhhhhhhhccccccccCccccchh-ccccccccc---cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--
Confidence 9999999988775 22 1 2233455667777 799999988 8999999999999999999999999987655
Q ss_pred CCCCccccccceeecCCCCCCCCCC-CceEEEEccCCEEEEeeCCcccceeeceeeeeeccccCCCceEEEEEeecCCCC
Q 001503 526 DNRASAKTTTDLIAYKNVNDLLPPR-DLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTP 604 (1065)
Q Consensus 526 ~~~~~~~~~~~~~sY~~~~~~P~~~-~~~i~vD~~~~~vilPi~G~~vPfHi~tiKn~s~~~e~~~~~~lrinF~~pg~~ 604 (1065)
++.+++..++++|||++++||+++ +|+|+||++++||||||||+||||||+||||+|+++| |+||||||||++||++
T Consensus 457 -s~~~~ks~k~~vsYk~~s~mP~~i~el~i~VD~k~esvilPI~g~~VPFHistikn~s~~~e-g~~tYLRinF~~pg~~ 534 (960)
T KOG1189|consen 457 -SKDEEKSRKRIVSYKRESQMPREIRELRIYVDKKYESVILPIFGIPVPFHISTIKNASQNVE-GDYTYLRINFNTPGSP 534 (960)
T ss_pred -ccchhhhhhccccccchhhcchhhhheEEEEecccceEEEeecCcccceehhhhhccccccc-CceeEEEEEecCCCCC
Confidence 456668899999999999999999 9999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCCcCccCcceEEEEEeeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeecCCCCCCccccccee
Q 001503 605 FNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWI 684 (1065)
Q Consensus 605 ~~~~~~~~~~~~~~~fikelt~rs~d~~~~~~~~~~I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~~~~~L~d~~~ 684 (1065)
.|+++..+|++|+|+||||+||||+|++|++++|++||+|||++++||+|+++++++|+||+|++++++++| +|+||||
T Consensus 535 ~g~~e~~~~~~~~a~flkeit~rs~~~~~~s~~f~~ik~l~k~~~~re~e~~eke~~v~qdkL~~~kn~~~p-~L~dlyi 613 (960)
T KOG1189|consen 535 GGKNEELPFENPGAQFLKEITFRSSNGKRSSEAFRQIKELQKRFKSREAERKEKEDLVKQDKLIESKNKSNP-KLKDLYI 613 (960)
T ss_pred CCCCCCCcCCCchhhhhhheeeeecCCcchHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhHHHHhhccCCC-chhheEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ccCCCCCCccCCceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceecceeEEEEee
Q 001503 685 RPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEV 764 (1065)
Q Consensus 685 rP~~~g~~kr~~G~le~h~ng~r~~~~~~~~~~di~y~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~~vQF~~e~ 764 (1065)
||+|.| ||++|+||+|+|||||+| .|+++|||||+||||||||||++|||+||||||++|||+||||++|||||+||
T Consensus 614 Rp~i~~--Kr~~G~lEaH~NGfRy~s-~R~~~vdiLfsNIKhafFqpc~~Emi~llHfHLknpIm~GkkK~~dVQFY~Ev 690 (960)
T KOG1189|consen 614 RPNIDT--KRIPGSLEAHENGFRYQS-LRDERVDILFSNIKHAFFQPCEGEMIILLHFHLKNPIMVGKKKTKDVQFYREV 690 (960)
T ss_pred cCCccc--cccccceeeecCceeeee-ccccchhhhhhhhhhhhcCccccceeeEeeehhccceeecccceeeeeeeehh
Confidence 999999 999999999999999999 67999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccCCCcceecccCCCcceeccccCceeee
Q 001503 765 MDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFI 844 (1065)
Q Consensus 765 ~~~~~~~~~~r~~~~d~de~~~eq~e~~~~~~ln~~f~~f~~~v~~~~~~~~~~~~~~~~~~p~~~l~f~g~~~~~~~~~ 844 (1065)
++++.||+++| ||+|+|||++||+||++|++||++|+.||++|++ ++ ...++|++|||+|||+|||+|++|+|
T Consensus 691 ~div~dlg~~~-~~~D~del~~EQ~Er~rr~~ln~~FksF~~kv~~----~~--~~~~efd~pfr~lGF~GvP~rssv~i 763 (960)
T KOG1189|consen 691 GDIVTDLGKRR-RMGDRDELEQEQEERDRRAKLNMAFKSFAEKVAE----AT--ESELEFDVPFRELGFNGVPFRSSVFI 763 (960)
T ss_pred hhHHHhhccCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh--ccceeeccchhhcCcCCCCccceeee
Confidence 99977777665 4799999999999999999999999999999976 43 45689999999999999999999999
Q ss_pred ecCcccceeeccCCcEEEEeCceeEEEEEeecCCCcceeEEEEEecCCCCeEEEecccCCChHHHHHHhhhcCceeeecc
Q 001503 845 VPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESR 924 (1065)
Q Consensus 845 ~pt~~clv~l~e~P~~vi~l~eie~v~feRv~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~e~~ 924 (1065)
+||.+|||+|+|||||||||+|||+||||||||++|||||+||||||+++|++|++||+++||.||+||++|||+|+||+
T Consensus 764 ~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfKd~~k~v~~i~svp~~sLd~iKEWLdscDI~y~Eg~ 843 (960)
T KOG1189|consen 764 QPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFKDFKKKVTMINSVPMESLDKLKEWLDSCDIKYTEGV 843 (960)
T ss_pred ecchhhhhccccCCceEEeecceeeeeeeeeeeccccceEEEEeccccccceeeeccchhhhhHHHHhhhcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHhhhhccCccchhccCCccccccccCCC--CCcCCccccCCCCCCCcCcCCCCCcCCCCcccccccccccccc
Q 001503 925 LNLNWRQILKTITDDPQSFIDDGGWEFLNLEASDS--ESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEED 1002 (1065)
Q Consensus 925 ~nlnW~~i~k~i~~d~~~f~~~ggw~fl~~~~~~~--~~~~~e~~d~~~e~s~~e~~~e~~~~~~~~d~~~~~~~~~~e~ 1002 (1065)
+||||++|||||++||.+||++|||+||+.+++|+ +.+++++++++|+++|+|+++++++|+++++ ++++|++++
T Consensus 844 ~sLNW~~ImKTI~dDP~~Ffe~GgW~fL~~~~sdsee~~~ese~e~~~y~psd~~v~~eS~ed~e~sE---~s~~de~~d 920 (960)
T KOG1189|consen 844 QSLNWTKIMKTITDDPIAFFEDGGWSFLNVESSDSEEGGDESEEEDSAYEPSDDDVSDESDEDEEESE---ESEEDEEDD 920 (960)
T ss_pred ccccHHHHhhhhccCHHHHHhcCCeeeecCCCCcccccccccccccccCCccccCccccccccccccc---ccccccccc
Confidence 99999999999999999999999999999987443 3345566789999998876665544333332 222222233
Q ss_pred CCccchhhccCChHHHHHHHHHhhhccCCCCCchHH
Q 001503 1003 SEEDSEEEKGKTWAELEREATNADREKGDDSDSEEE 1038 (1065)
Q Consensus 1003 ~~~~~~~~~g~~wdele~~a~~~d~~~~~~~~~~~~ 1038 (1065)
++.++|||+|+||||||++|+++|++++.+++....
T Consensus 921 e~~~sdEE~gkdwdele~ea~~~dr~~~~~~e~~s~ 956 (960)
T KOG1189|consen 921 EDLESDEESGKDWDELEREARNADREHGAEEERESE 956 (960)
T ss_pred ccccchhhhccchhhhHHHHhhcchhhchhhhcchh
Confidence 444557799999999999999999988765544433
No 2
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-215 Score=1784.41 Aligned_cols=975 Identities=34% Similarity=0.581 Sum_probs=869.2
Q ss_pred CCccCCCHHHHHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCcccccccccceEEEcCCcCCcEEEEEECCcEEEEE
Q 001503 18 ANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLC 97 (1065)
Q Consensus 18 M~~~~id~~~f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~ks~al~~wLtGye~p~tlllit~~~~~ll~ 97 (1065)
|+++.|+.+.|++|+.-|+..|.+.. +++|.||++.|.+++.|+|+|+++++.||+||+||.|++++.+..+++++
T Consensus 1 M~e~~ide~~F~kR~~~l~~~~ne~d----G~p~sllv~lG~s~d~npyqk~taLh~wLLgYEFP~Tli~l~~~~~~I~t 76 (1001)
T COG5406 1 MPEIRIDEERFEKRSRDLRKHLNEED----GGPDSLLVMLGKSQDVNPYQKNTALHIWLLGYEFPETLIILDDVCTAITT 76 (1001)
T ss_pred CCcccccHHHHHHHHHHHHHhhhhcc----CCCceEEEEeccccccChhhhhhHHHHHHHhccCcceEEEEecceEEEEe
Confidence 78899999999999999999997643 78999999999977889999999999999999999999999999999999
Q ss_pred eCCccchHHH-HHhhccccCCcEEEEEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHHHHh
Q 001503 98 SQKKASLLGM-VKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRL 176 (1065)
Q Consensus 98 s~kK~~~le~-~~~~~~~~~~vei~~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~~~l 176 (1065)
+.+|+.++.. +.+........+++.++|+++.+. .+|+.++..|.+ .++.||+..++.+.|.|+..|...+
T Consensus 77 s~~kA~~lqk~l~~~~~~~v~~n~~~r~k~~eenk-KlF~~~i~~i~s-------~~k~VG~f~kD~~qgkfi~ew~~i~ 148 (1001)
T COG5406 77 SKKKAILLQKGLAETSLNIVVRNKDNRTKNMEENK-KLFKGSIYVIGS-------ENKIVGDFCKDVLQGKFINEWDSIF 148 (1001)
T ss_pred chhhHHHHHhhhccCcchhhhhhhhhcccCHHHHH-HHHhhhheeccc-------CCcccCccchhhhhcccccccchhh
Confidence 9888887765 222211112233445555555555 788888888873 6899999999999999999999988
Q ss_pred hc--CCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccc
Q 001503 177 QN--SGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAG 254 (1065)
Q Consensus 177 ~~--~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~ 254 (1065)
.. +.+..+|++..|+.+..+|+++||+.+|.|++.++..|. ++...|...+|.+..+||..|.+.++..+.+. ++.
T Consensus 149 e~vk~efN~~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~-~~~~em~~~~D~~~kit~~KlsD~mes~iddv-~f~ 226 (1001)
T COG5406 149 EPVKSEFNASDVSLGLSKMFLTKDAEEIANCRASSAASSVLMR-YFVKEMEMLWDGAFKITHGKLSDLMESLIDDV-EFF 226 (1001)
T ss_pred hhhhhhcchhhhhhhhhHHhccccHHHHhhccccchHHHHHHH-HHHHHHHHHHhhhhhhccchHHHHhhhhcchh-hhh
Confidence 64 367899999999999999999999999999999999999 99999999999999999999999999877542 221
Q ss_pred -------cccCCCCCCCCCCCEEEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHH
Q 001503 255 -------VKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKV 327 (1065)
Q Consensus 255 -------~~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~ 327 (1065)
.+++.+..+|||.||||||+.++++|++.+.++.|.. |+|++++|.||+||||+++||++++|+.+|++.
T Consensus 227 q~~s~~l~~~~~d~lew~ytpiiqsg~~~Dl~psa~s~~~~l~g---d~vl~s~GiRYn~YCSn~~RT~l~dp~~e~~~N 303 (1001)
T COG5406 227 QTKSLKLGDIDLDQLEWCYTPIIQSGGSIDLTPSAFSFPMELTG---DVVLLSIGIRYNGYCSNMSRTILTDPDSEQQKN 303 (1001)
T ss_pred hhcCccccccchhhhhhhcchhhccCceeecccccccCchhhcC---ceEEEEeeeeeccccccccceEEeCCchHhhhh
Confidence 2456677899999999999999999999999988865 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcEEEEee
Q 001503 328 YEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSI 407 (1065)
Q Consensus 328 y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMVfsIEp 407 (1065)
|++++.+|..++..+|||++.++||..+..++.+.||+++++|..++|-+||++++++...++.++.++|+.||+|+|..
T Consensus 304 y~fl~~lQk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~nvkn~r~lq~g~~fnis~ 383 (1001)
T COG5406 304 YEFLYMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAGCIFNISL 383 (1001)
T ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCchHhhhhhhhccccccccccceeccCCceeccccEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred ccccccCCCCCCCCCeeEEEEEEEEEEeCCCceecCccCcccHhhhccccCCchhh-h-c-cccccccc-CCcccccccc
Q 001503 408 GFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNEDEEE-E-E-RPKVKAEA-NGTEALPSKT 483 (1065)
Q Consensus 408 g~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~evLT~~~pk~l~~I~~~~~d~~~~-~-~-~~~~~~~~-~~~~~~~~~~ 483 (1065)
||.++-+|.. ...|++.+.||+.|+-+.|.+||. +|+.-.+|+|+|.++++. + . .+.+.+.. .+...+ .++
T Consensus 384 gf~nl~~~~~---~Nnyal~l~dt~qi~ls~p~~~t~-~~kaq~~isf~fgedd~~~e~~~~~~k~P~~~d~~~~~-~r~ 458 (1001)
T COG5406 384 GFGNLINPHP---KNNYALLLIDTEQISLSNPIVFTD-SPKAQGDISFLFGEDDETPEYLTLQDKAPDFLDKTISS-HRS 458 (1001)
T ss_pred cccccCCCCc---ccchhhhhccceEeecCCceeccc-CcccccceeEEecCCCCChhhcccccCCCCccccchhh-hhh
Confidence 9999887653 355999999999999888999996 999999999999965553 2 1 11122222 233445 588
Q ss_pred cccCccccc--cHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCccccccceeecCCCCCCCCCC-CceEEEEccC
Q 001503 484 TLRSDNQEI--SKEELRRQHQAELARQKNEETGRRLAGGGSGAGDNRASAKTTTDLIAYKNVNDLLPPR-DLMIQIDQKN 560 (1065)
Q Consensus 484 ~~r~~~~~~--~~e~~r~~~Q~eL~~~~~~e~~~r~~~~~~~~~~~~~~~~~~~~~~sY~~~~~~P~~~-~~~i~vD~~~ 560 (1065)
|+|.++++. +++++|.||||+|++++++|++.||.++++.+. ...+++.+++++||++++|+|+.+ +|+|+||.+.
T Consensus 459 k~R~etr~~~~~a~k~r~EhQK~L~~k~~~egL~rf~~a~~~gp-ds~~~~~~kr~esY~rdSqlP~~i~elRi~VD~~~ 537 (1001)
T COG5406 459 KFRDETREHELNARKKRVEHQKELLDKIIEEGLERFRNASDAGP-DSIEEKSEKRIESYSRDSQLPRQIGELRIIVDFAR 537 (1001)
T ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-ccccchhhhhhccccccccccccccceEEEEEecc
Confidence 999988753 468888899999999999999999976555511 223348899999999999999999 9999999999
Q ss_pred CEEEEeeCCcccceeeceeeeeeccccCCCceEEEEEeecCCCCCCCCCCCCcCccCcceEEEEEeeeCCcchHHHHHHH
Q 001503 561 EAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGA 640 (1065)
Q Consensus 561 ~~vilPi~G~~vPfHi~tiKn~s~~~e~~~~~~lrinF~~pg~~~~~~~~~~~~~~~~~fikelt~rs~d~~~~~~~~~~ 640 (1065)
++|||||+|+|||||||+|||+|+++| |+|+||||||++||++.||.+..||+++++.|||++|+||.++.+|.++|++
T Consensus 538 qsIilPI~grpVPFHiss~Knasknde-g~~~yLRlNF~spg~~ggk~eElp~E~~~~qF~rsit~rS~~g~rms~~fk~ 616 (1001)
T COG5406 538 QSIILPIGGRPVPFHISSIKNASKNDE-GNFVYLRLNFKSPGKGGGKTEELPCEQRGEQFLRSITSRSIRGNRMSDLFKE 616 (1001)
T ss_pred ceEEEeecCcccceeehhhccccccCC-CceEEEEEeccCCCCCCCccccCcccccchhhhhheeeeeccCccHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccceeecCCCCCCcccccceeccCCCCCCccCCceEEEEecceeeecCCCCc-eeee
Q 001503 641 IKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEE-RVDI 719 (1065)
Q Consensus 641 I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~~~~~L~d~~~rP~~~g~~kr~~G~le~h~ng~r~~~~~~~~-~~di 719 (1065)
|++|||.+++||+||++-|++++|+|||+++.+++- ++.+++|||+++| ||++|+||+|+|||||+|+.+++ +|||
T Consensus 617 I~dlKK~atkrEterke~adv~eqdKlie~k~~rt~-~~~~~~vRp~~d~--KR~pg~~eiHeNGiRfqsplrsds~idi 693 (1001)
T COG5406 617 INDLKKGATKRETERKEDADVLEQDKLIERKLSRTD-VYMKTDVRPGSDG--KRKPGNLEIHENGIRFQSPLRSDSHIDI 693 (1001)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHhhhhhhhccccccc-hhhhcccccCCCc--CccCccEEEecCceeecCCcccCceeEE
Confidence 999999999999999999999999999999999988 9999999999999 99999999999999999997666 8999
Q ss_pred eccccceeeeccCCCccEEEEEEEcccceeeCceecceeEEEEeeeeeEEecCCCcCC---CCChhHHHHHHHHHHHHHH
Q 001503 720 MFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRS---AYDPDEIEEEQRERARKNK 796 (1065)
Q Consensus 720 ~y~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~~vQF~~e~~~~~~~~~~~r~~---~~d~de~~~eq~e~~~~~~ 796 (1065)
||+||||+|||||.+|+||+|||||++|||+||+|++|||||||++++.+|.+|+|++ |+|+||+++||+||++|+.
T Consensus 694 LFSNikhlfFq~c~gEliviiH~HLk~PIl~GkrKvqdVQFYREasd~~vdeTg~~~rk~~ygdedElEqEqeerrrraa 773 (1001)
T COG5406 694 LFSNIKHLFFQECNGELIVIIHFHLKSPILTGKRKVQDVQFYREASDTMVDETGKRGRKEHYGDEDELEQEQEERRRRAA 773 (1001)
T ss_pred eeccchhheeccCCceEEEEEEEeecCceecCCceeeeeeeeecccccchhhhccccchhhccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877 6899999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCccCCCcceecccCCCcceeccccCceeeeecCcccceeeccCCcEEEEeCceeEEEEEeec
Q 001503 797 INMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVG 876 (1065)
Q Consensus 797 ln~~f~~f~~~v~~~~~~~~~~~~~~~~~~p~~~l~f~g~~~~~~~~~~pt~~clv~l~e~P~~vi~l~eie~v~feRv~ 876 (1065)
|+++|+.|+.+|++ ++ .+.|+|++|||+|||+|||+|++|+|+||++|||+|+|.|||||||+||||||||||+
T Consensus 774 ld~eFksFa~~Iae----as--~gri~~~~~fr~lgF~GVPfRs~V~~~pTtdCLVqL~e~Pf~VitLeevEi~~lERVq 847 (1001)
T COG5406 774 LDQEFKSFASSIAE----AS--EGRIEFKVQFRKLGFYGVPFRSSVMIKPTTDCLVQLDEAPFFVITLEEVEIVNLERVQ 847 (1001)
T ss_pred HHHHHHHHHHHHHH----hh--cCceEEeeechhccccCCccccceeeecchhheeeccCCceEEEEecceeEEeeeeEE
Confidence 99999999999977 44 4569999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEEEecCCCCeEEEecccCCChHHHHHHhhhcCceeeecccccchHHHhhhhccCccchhccCCcccccccc
Q 001503 877 LGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLEA 956 (1065)
Q Consensus 877 ~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~e~~~nlnW~~i~k~i~~d~~~f~~~ggw~fl~~~~ 956 (1065)
||+||||||||||||.++++||++||+++|+.||+||+||||+|+|++.||||++|||+|++||.+||++|||+||...+
T Consensus 848 fglKnfD~vFi~~df~rp~vhIntvpvesld~lKewLds~di~f~e~~~nlnW~timksi~~DPi~FfedGgW~fL~~gs 927 (1001)
T COG5406 848 FGLKNFDVVFILRDFYRPLVHINTVPVESLDKLKEWLDSNDILFMETSANLNWNTIMKSIMKDPISFFEDGGWSFLMVGS 927 (1001)
T ss_pred eecccceEEEEeccccCCcceeccccHHHHHHHHHHhhhcCceeEeccccccHHHHHHHHhcCcHHHhhcCcceeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCcCCccccCCCCCCCcCcCCCCCcCCCCccccccccccccccCCccchhhccCChHHHHHHHHHhhhc
Q 001503 957 SDSESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSEEEKGKTWAELEREATNADRE 1028 (1065)
Q Consensus 957 ~~~~~~~~e~~d~~~e~s~~e~~~e~~~~~~~~d~~~~~~~~~~e~~~~~~~~~~g~~wdele~~a~~~d~~ 1028 (1065)
||+. ++++++-|+|+.|++++.++.++||+.+++++|-++|+ ++ ++.+|||+|+||||||+||+.+++-
T Consensus 928 ddE~-deseeEvSEyeaS~dd~sdet~edees~e~seD~sede-Se-~~~~DeE~gEDwdele~kaa~~~rp 996 (1001)
T COG5406 928 DDES-DESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDE-SE-NDSSDEEDGEDWDELESKAAYDSRP 996 (1001)
T ss_pred cccc-cccchhhhhhhccCCCcccccccccccccccccccccc-cc-ccccccccccchhhHhhhhhhhccC
Confidence 6544 55666678898887765554433333333333332222 22 2234678999999999999887763
No 3
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=100.00 E-value=1.7e-58 Score=459.44 Aligned_cols=152 Identities=53% Similarity=0.904 Sum_probs=149.3
Q ss_pred EEEEccCCEEEEeeCCcccceeeceeeeeeccccCCCceEEEEEeecCCCCCCCCCCCCcCccCcceEEEEEeeeCCcch
Q 001503 554 IQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRH 633 (1065)
Q Consensus 554 i~vD~~~~~vilPi~G~~vPfHi~tiKn~s~~~e~~~~~~lrinF~~pg~~~~~~~~~~~~~~~~~fikelt~rs~d~~~ 633 (1065)
||||++++||||||||+|||||||||||||+++| |+|+||||||++||++.|++++.|+.+|+++|||||||||+|.+|
T Consensus 1 I~VD~k~esvllPI~G~~VPFHIstIKnvs~~~e-g~~~ylRINF~~Pg~~~~k~~~~~~~~~~~~fiKeltfRs~d~~~ 79 (152)
T PF08644_consen 1 IYVDKKNESVLLPINGRPVPFHISTIKNVSKSDE-GDYTYLRINFNTPGSTTGKKDDNPFEDPDAIFIKELTFRSKDSRH 79 (152)
T ss_pred CeEeccCCEEEEEeCCcccceEeeeEEcceeccC-CCeEEEEEEEeCCCcccccccccccCCCCCeEEEEEEEEeCCchH
Confidence 7999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeecCCCCCCcccccceeccCCCCCCccCCceEEEEecceee
Q 001503 634 IGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRF 708 (1065)
Q Consensus 634 ~~~~~~~I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~~~~~L~d~~~rP~~~g~~kr~~G~le~h~ng~r~ 708 (1065)
|++++++||+|||++++||+|++|++++|+||+|++++++++| +|+||||||+++|+ ||++|+||||+|||||
T Consensus 80 ~~~v~~~Ikel~k~~~~re~E~~e~~~~v~QekL~~~~~~~~~-~L~dl~iRP~~~g~-kr~~G~LEaH~NGfRy 152 (152)
T PF08644_consen 80 LQEVFRQIKELQKRVKQREQERREKADLVEQEKLILSKNRRPP-RLKDLYIRPAIGGR-KRVPGTLEAHTNGFRY 152 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccceEEccCCCCC-ccCCceECCCCccc-cccCceEEEecCcccC
Confidence 9999999999999999999999999999999999999988888 99999999999887 9999999999999998
No 4
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=1.3e-55 Score=507.48 Aligned_cols=350 Identities=19% Similarity=0.277 Sum_probs=302.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCcccccccccceEEEcCCcCCcEEEEEECCcEEEEEeCCccchHHHHH
Q 001503 30 TRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVK 109 (1065)
Q Consensus 30 ~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~ks~al~~wLtGye~p~tlllit~~~~~ll~s~kK~~~le~~~ 109 (1065)
.|+++|++.|++ .++||++|+.+. | ++|||||....+++|+++++.+|+++. +|.+++.
T Consensus 2 ~Rl~~l~~~m~~------~~lDa~lI~~~~-n-----------~~YLTGf~g~~g~llIt~~~~~l~td~---ry~~qa~ 60 (361)
T PRK09795 2 TLLASLRDWLKA------QQLDAVLLSSRQ-N-----------KQPHLGISTGSGYVVISRESAHILVDS---RYYADVE 60 (361)
T ss_pred cHHHHHHHHHHH------CCCCEEEECCcc-c-----------cccccCccCCCeEEEEECCCCEEEcCc---chHHHHH
Confidence 599999999999 899999999887 4 789999998888889999888888765 6888876
Q ss_pred hhccccCCcEEEEEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHHHHhhcCCCeEEeccCC
Q 001503 110 RSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNG 189 (1065)
Q Consensus 110 ~~~~~~~~vei~~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~~~l~~~~~~~vDvs~~ 189 (1065)
.. .++.+++.+. ... ...+.+.+.|+. .+.++||++.. .++...+..|.+.+. ..++|++
T Consensus 61 ~~---~~~~~v~~~~----~~~-~~~~~L~~~L~~------~~~~~Ig~e~~-~~s~~~~~~L~~~l~---~~~~~~~-- 120 (361)
T PRK09795 61 AR---AQGYQLHLLD----ATN-TLTTIVNQIIAD------EQLQTLGFEGQ-QVSWETAHRWQSELN---AKLVSAT-- 120 (361)
T ss_pred hh---CCCceEEEec----CCc-cHHHHHHHHHHh------cCCcEEEEecC-cccHHHHHHHHHhcC---ccccccc--
Confidence 54 2345665542 111 345667777774 23478999976 678888888876653 5566654
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCE
Q 001503 190 LSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPI 269 (1065)
Q Consensus 190 l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pI 269 (1065)
+..+|+|||++||++||+|++|++.++. ++.+.++ ||+||.+|++.++..+... |+. ..+|+||
T Consensus 121 ~~~lR~iKs~~Ei~~~r~a~~i~~~~~~-~~~~~i~------~G~tE~e~~~~~~~~~~~~-------G~~--~~~f~~i 184 (361)
T PRK09795 121 PDVLRQIKTPEEVEKIRLACGIADRGAE-HIRRFIQ------AGMSEREIAAELEWFMRQQ-------GAE--KASFDTI 184 (361)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCcHHHHHHHHHHHHHHC-------CCC--cCCCCeE
Confidence 8999999999999999999999999998 8888888 6999999999999998753 333 5689999
Q ss_pred EEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-C--CH---HHHHHHHHHHHHHHHHHHhCC
Q 001503 270 FQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-A--TP---LQSKVYEVLLKAHEAAIGALK 343 (1065)
Q Consensus 270 V~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-p--s~---eq~~~y~~llea~~a~i~~lr 343 (1065)
|+||.|+++ ||+.|+++.|+.| |+|++|+|+.|+|||||++|||++| + ++ +++++|++++++|.++++++|
T Consensus 185 v~sG~~~~~-ph~~~~~~~l~~g--d~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~r 261 (361)
T PRK09795 185 VASGWRGAL-PHGKASDKIVAAG--EFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIR 261 (361)
T ss_pred EEEeccccc-cCCCCCCceecCC--CEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999987 8999999999999 9999999999999999999999995 2 33 378999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcEEEEeeccccccCCCCCCCCCe
Q 001503 344 PGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQM 423 (1065)
Q Consensus 344 PGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~ 423 (1065)
||+++++|++++++++++.| |..+|.|++|||||+++||.| .++++++.+|++||||+||||+| + ++.
T Consensus 262 pG~~~~~v~~~~~~~~~~~g--~~~~~~h~~GHgiGl~~he~p-~i~~~~~~~l~~gmv~~iEpgiy-~--------~~~ 329 (361)
T PRK09795 262 PGVRCQQVDDAARRVITEAG--YGDYFGHNTGHAIGIEVHEDP-RFSPRDTTTLQPGMLLTVEPGIY-L--------PGQ 329 (361)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CCccCCCCCCccCCccccCCC-CcCCCCCCCcCCCCEEEECCEEE-e--------CCC
Confidence 99999999999999999999 999999999999999999999 48899999999999999999999 5 466
Q ss_pred eEEEEEEEEEEeCCCceecCccCcccHhh
Q 001503 424 FSLLLADTVIVGENNPEVVTCKSSKAVKD 452 (1065)
Q Consensus 424 ~gv~ieDTVlVTe~G~evLT~~~pk~l~~ 452 (1065)
+|+++||||+||++|+++||. .|++|..
T Consensus 330 ~gvriEd~v~vt~~G~e~Lt~-~~~~l~~ 357 (361)
T PRK09795 330 GGVRIEDVVLVTPQGAEVLYA-MPKTVLL 357 (361)
T ss_pred CEEEEeeEEEECCCCcEeCcC-CCceEEE
Confidence 899999999999999999997 9988743
No 5
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=7.4e-53 Score=489.10 Aligned_cols=373 Identities=16% Similarity=0.233 Sum_probs=301.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCcccccccccceEEEcCCcCCc----EEEEEEC-CcEEE
Q 001503 21 YSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPE----TVMVFMK-KQIQF 95 (1065)
Q Consensus 21 ~~id~~~f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~ks~al~~wLtGye~p~----tlllit~-~~~~l 95 (1065)
..|+.++|++|+++|++.|++ +++|++||+.+. | ++|||||.... .++|++. +.+++
T Consensus 4 ~~f~~~E~~~Rl~rl~~~m~~------~~lDalli~~~~-n-----------i~YltG~~~~~~~~~~~l~v~~~~~~~l 65 (391)
T TIGR02993 4 LFFTRAEYQARLDKTRAAMEA------RGIDLLIVTDPS-N-----------MAWLTGYDGWSFYVHQCVLLPPEGEPIW 65 (391)
T ss_pred CCCCHHHHHHHHHHHHHHHHH------cCCCEEEEcCcc-c-----------ceeeccCCCCceEEEEEEEEcCCCceEE
Confidence 459999999999999999999 899999999987 5 88999998632 4556664 45666
Q ss_pred EEeCCccchHHHHHhhccccCCcEEEEEeccc--cCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCC-CCcHHHHHHH
Q 001503 96 LCSQKKASLLGMVKRSAKDAVGADVVIHVKAK--TDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARE-TPEGRLLETW 172 (1065)
Q Consensus 96 l~s~kK~~~le~~~~~~~~~~~vei~~~~kd~--~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd-~~~g~~~~~l 172 (1065)
++.. .. ...+.... .....++..|.... .... ++++.+.+.|++. +...++||++... .++...+..|
T Consensus 66 ~~~~--~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~----g~~~~~ig~e~~~~~~~~~~~~~l 136 (391)
T TIGR02993 66 YGRG--QD-ANGAKRTA-FMDHDNIVGYPDHYVQSTER-HPMDYLSEILQDR----GWDSLTIGVEMDNYYFSAAAFASL 136 (391)
T ss_pred Eehh--hh-hhhHhhee-eccccceeecccccccCCCC-CHHHHHHHHHHhc----CCCCCcEEEecCCCccCHHHHHHH
Confidence 6632 11 12222110 00111233332000 0112 5678888888863 2345689999753 3688899999
Q ss_pred HHHhhcCCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCc
Q 001503 173 ADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTK 252 (1065)
Q Consensus 173 ~~~l~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k 252 (1065)
.+.|+ +++++|++.++.++|+|||++||++||+|++|++.+|. ++.+.++ ||+||.||++.+.......
T Consensus 137 ~~~l~--~~~~~d~~~~~~~lR~iKs~~EI~~lr~A~~i~~~~~~-~~~~~i~------pG~tE~ei~~~~~~~~~~~-- 205 (391)
T TIGR02993 137 QKHLP--NARFVDATALVNWQRAVKSETEISYMRVAARIVEKMHQ-RIFERIE------PGMRKCDLVADIYDAGIRG-- 205 (391)
T ss_pred HHhCC--CCEEEehHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH-HHHHHhc------CCCCHHHHHHHHHHhhhhc--
Confidence 99987 79999999999999999999999999999999999999 8999898 6999999999886543211
Q ss_pred cccccCCCCCCCCCCCEEEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHH
Q 001503 253 AGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVL 331 (1065)
Q Consensus 253 ~~~~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~l 331 (1065)
. .+.++...+|.||++||.++++ +|+.|+++.|+.| |+|++|+|++|+|||||++|||++| |+++|+++|+++
T Consensus 206 ~---~~~g~~~~~~~~iv~sG~~~a~-pH~~~~~~~l~~g--d~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~ 279 (391)
T TIGR02993 206 V---DGFGGDYPAIVPLLPSGADASA-PHLTWDDSPMKVG--EGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAV 279 (391)
T ss_pred c---cCcCCCcCCcccccccCccccC-CCCCCCCCcccCC--CEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHH
Confidence 0 1122224567789999999987 8999999999999 9999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccC----CccccCCCCccccCCcEEEEee
Q 001503 332 LKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRES----GLNLNAKNDRVVKAKMIFNVSI 407 (1065)
Q Consensus 332 lea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~----p~~i~~~~~~vLe~GMVfsIEp 407 (1065)
++|+.++++++|||+++++|++++++++++.| +.. .|++|||||+++|+. +..|++++..+|++||||+|||
T Consensus 280 ~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G--~~~--~h~~GhgiGl~~~~~~~e~~~~l~~~~~~~L~~GMv~tvEp 355 (391)
T TIGR02993 280 LEGMEAGLEAAKPGNTCEDIANAFFAVLKKYG--IHK--DSRTGYPIGLSYPPDWGERTMSLRPGDNTVLKPGMTFHFMT 355 (391)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--Ccc--CCCceeeeccCcCCCCCCccccccCCCCceecCCCEEEEcc
Confidence 99999999999999999999999999999999 653 588999999998742 2368899999999999999999
Q ss_pred ccccccCCCCCCCCCeeEEEEEEEEEEeCCCceecCccCcccHhh
Q 001503 408 GFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKD 452 (1065)
Q Consensus 408 g~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~evLT~~~pk~l~~ 452 (1065)
|+| ++ + +|+++||||+||++|+++||. +|++|..
T Consensus 356 giy-~~--------~-~Gvried~v~VT~~G~e~Lt~-~p~~l~~ 389 (391)
T TIGR02993 356 GLW-ME--------D-WGLEITESILITETGVECLSS-VPRKLFV 389 (391)
T ss_pred eeE-eC--------C-CCeEEeeEEEECCCcceeccc-CCcccEe
Confidence 999 43 3 589999999999999999997 9999854
No 6
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-51 Score=472.46 Aligned_cols=369 Identities=22% Similarity=0.325 Sum_probs=309.9
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCcccccccccceEEEcCCcC-C---cEEEEEECC-cEEEEE
Q 001503 23 INLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEF-P---ETVMVFMKK-QIQFLC 97 (1065)
Q Consensus 23 id~~~f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~ks~al~~wLtGye~-p---~tlllit~~-~~~ll~ 97 (1065)
+....+..|+.+++..|.+ .++|++++..+. + ++|||||.. + ...++++.+ .+++++
T Consensus 5 ~~~~~~~~rl~~~~~~~~~------~~~~~~~~~~~~-n-----------~~yltg~~~~~~~~~~~~~~~~~~~~~l~~ 66 (384)
T COG0006 5 FADEEYRARLARLRELMEE------AGLDALLLTSPS-N-----------FYYLTGFDAFGFERLQALLVPAEGEPVLFV 66 (384)
T ss_pred cchHHHHHHHHHHHHHHHH------cCCcEEEecCCC-c-----------eEEEeCCCCCcccceEEEEEcCCCceEEEE
Confidence 5667899999999999999 899999999887 4 899999984 1 234444544 478888
Q ss_pred eCCccchHHHHHhhccccCC-cEEEEEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCC-CcHHHHHHHHHH
Q 001503 98 SQKKASLLGMVKRSAKDAVG-ADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARET-PEGRLLETWADR 175 (1065)
Q Consensus 98 s~kK~~~le~~~~~~~~~~~-vei~~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~-~~g~~~~~l~~~ 175 (1065)
+. .+.+.+.... ... ..+..|... .+...+++.+...+... +....++|++.... ++...+..+...
T Consensus 67 ~~---~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~l~~~ 135 (384)
T COG0006 67 RG---RDEEAAKETS--WIKLENVEVYEDD--EDPAAPLDLLGALLEEL----GLAGKRIGIESASIFLTLAAFERLQAA 135 (384)
T ss_pred cc---hhHHHHHhhc--ccccCceEEEecC--CccccHHHHHHHHHHhc----cccccceEEEeccCccCHHHHHHHHhh
Confidence 65 2334433221 111 234444311 11101456677777642 23467899997642 677888888888
Q ss_pred hhcCCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCcccc
Q 001503 176 LQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGV 255 (1065)
Q Consensus 176 l~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~ 255 (1065)
++ ..+++|++..+..+|+|||+.||++||+|+.+++.++. .+.+.++ +|+||.+|++.++..+.+.
T Consensus 136 ~~--~~~~~~~~~~i~~lR~iKs~~EI~~ir~A~~i~~~a~~-~~~~~~~------~g~tE~ev~a~l~~~~~~~----- 201 (384)
T COG0006 136 LP--RAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALE-AALEAIR------PGMTEAEIAAELEYALRKG----- 201 (384)
T ss_pred CC--CCEEeccHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCcHHHHHHHHHHHHHHc-----
Confidence 87 55999999999999999999999999999999999999 8999888 6999999999999999853
Q ss_pred ccCCCCCCCCCCCEEEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHH
Q 001503 256 KLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKA 334 (1065)
Q Consensus 256 ~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea 334 (1065)
|+ ...+|++||++|.|+++ ||+.++++.++.| |+|++|+|+.|+|||||+||||++| |+++|+++|+.+++|
T Consensus 202 --G~--~~~sf~~iv~~G~n~a~-pH~~~~~~~~~~g--d~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~a 274 (384)
T COG0006 202 --GA--EGPSFDTIVASGENAAL-PHYTPSDRKLRDG--DLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEA 274 (384)
T ss_pred --CC--CccCcCcEEeccccccC-cCCCCCcccccCC--CEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHH
Confidence 33 24589999999999998 8999999999999 9999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeec--cccccCCccccCCCCccccCCcEEEEeeccccc
Q 001503 335 HEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIG--LEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNL 412 (1065)
Q Consensus 335 ~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIG--le~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l 412 (1065)
|.++++++|||+++++|+.++++++.+.| +..+|.|++|||+| +++||.|..+.+++..+|++||||++|||+| +
T Consensus 275 q~aa~~~~rpG~~~~~vd~~ar~~i~~~g--~~~~~~h~~GHgvG~~l~vhE~p~~~~~~~~~~L~~GMv~t~Epg~y-~ 351 (384)
T COG0006 275 QEAAIAAIRPGVTGGEVDAAARQVLEKAG--YGLYFLHGTGHGVGFVLDVHEHPQYLSPGSDTTLEPGMVFSIEPGIY-I 351 (384)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHhcC--CcccccCCccccCCCCcccCcCccccCCCCCccccCCcEEEeccccc-c
Confidence 99999999999999999999999999999 99999999999999 9999999658899999999999999999998 4
Q ss_pred cCCCCCCCCCeeEEEEEEEEEEeCCCceecCccCcccHhhh
Q 001503 413 QNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDV 453 (1065)
Q Consensus 413 ~~~~~~~~~~~~gv~ieDTVlVTe~G~evLT~~~pk~l~~I 453 (1065)
++.+|+||||+|+||++|+++|| ..|+.+..+
T Consensus 352 --------~g~~GirIEd~vlVte~G~e~LT-~~~~~~~~~ 383 (384)
T COG0006 352 --------PGGGGVRIEDTVLVTEDGFEVLT-RVPKELLVI 383 (384)
T ss_pred --------CCCceEEEEEEEEEcCCCceecc-cCCcceeec
Confidence 57899999999999999999999 599887654
No 7
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=1.4e-50 Score=471.96 Aligned_cols=362 Identities=14% Similarity=0.209 Sum_probs=291.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCcccccccccceEEEcCCcCCc---------EEEEEECC-c-EE-E
Q 001503 28 FSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPE---------TVMVFMKK-Q-IQ-F 95 (1065)
Q Consensus 28 f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~ks~al~~wLtGye~p~---------tlllit~~-~-~~-l 95 (1065)
...=+++|++.|++ +|+|++||+.++ | +.|||||.... +++|++.+ + ++ +
T Consensus 9 ~~~~~~rlr~~m~~------~glD~lvl~~p~-n-----------~~ylTG~~~~~~~~~r~~~~~~lvv~~~~~~p~~~ 70 (406)
T PRK14575 9 LNTVSRKLRTIMER------DNIDAVIVTTCD-N-----------FYHVTGILSFFMYTFRNTGTAIAVVFRDVKIPSLI 70 (406)
T ss_pred HHHHHHHHHHHHHH------cCCCEEeecCcc-h-----------heeecccccccceecccCCceEEEEEcCCCCCceE
Confidence 34457899999999 899999999987 5 89999987522 34677765 3 55 5
Q ss_pred EEeCCccchHHHHHhhccccCCc-EEEEEe--ccccC------------cc---ccHHHHHHHHHhcccCCCCCCCCEEE
Q 001503 96 LCSQKKASLLGMVKRSAKDAVGA-DVVIHV--KAKTD------------DG---VELMDAIFNAVRSQSNVDSGDGPIVG 157 (1065)
Q Consensus 96 l~s~kK~~~le~~~~~~~~~~~v-ei~~~~--kd~~~------------~~---~~~~~~l~~~lk~~~~~~~~~~krIG 157 (1065)
+++. .+ ...+..... .+.. ++..|. .++.. .. ...++.+.+.|+++ +..+++||
T Consensus 71 i~p~--~E-~~~~~~~~~-~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~ig 142 (406)
T PRK14575 71 IMNE--FE-AASLTLDMP-NAELKTFPVWVDVDDPFNMRDSANNNKERPIGPPIESVCNILKDALNDA----RVLNKKIA 142 (406)
T ss_pred Eech--hh-hhhhccccc-ccccccCCceEeeeccccccchhhhhhcCCCCCCHHHHHHHHHHHHHhc----CCcCCEEE
Confidence 5532 11 122221100 0111 222332 10110 00 01222566777642 24578999
Q ss_pred EeCCCCCcHHHHHHHHHHhhcCCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 001503 158 SIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHS 237 (1065)
Q Consensus 158 v~~kd~~~g~~~~~l~~~l~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~ 237 (1065)
++.. .++...+..|...++ +++++|++.++.++|+|||++||++||+|+++++.+|. ++.+.++ ||+||.
T Consensus 143 ve~~-~~~~~~~~~l~~~lp--~~~~~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~-~~~~~i~------pG~tE~ 212 (406)
T PRK14575 143 IDLN-IMSNGGKRVIDAVMP--NVDFVDSSSIFNELRVIKSPWEIKRLRKSAEITEYGIT-EASKLIR------VGCTSA 212 (406)
T ss_pred EccC-CCCHHHHHHHHHhCC--CCeEEEcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCCHH
Confidence 9976 678888999988888 78999999999999999999999999999999999999 8888888 699999
Q ss_pred HHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEE
Q 001503 238 LLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFL 317 (1065)
Q Consensus 238 eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~ 317 (1065)
+|++.+...+... +. ...++.+++++|+++. +|+.|+++.|+.| |+|++|+|++|+|||||++|||+
T Consensus 213 elaa~~~~~~~~~-------g~--~~~~~~~~v~~G~~~~--~h~~~~~~~l~~G--d~v~iD~g~~~~GY~sditRT~~ 279 (406)
T PRK14575 213 ELTAAYKAAVMSK-------SE--THFSRFHLISVGADFS--PKLIPSNTKACSG--DLIKFDCGVDVDGYGADIARTFV 279 (406)
T ss_pred HHHHHHHHHHHHc-------CC--CcCCcCceEEECCCcc--cCCCCCCCcCCCC--CEEEEEeceEECCEeeeeEEEEE
Confidence 9999998877642 22 1244457899999853 7889999999999 99999999999999999999999
Q ss_pred Ec-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeec--cccccCCccccCCCC
Q 001503 318 ID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIG--LEFRESGLNLNAKND 394 (1065)
Q Consensus 318 Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIG--le~~E~p~~i~~~~~ 394 (1065)
+| |+++|+++|++++++++++++++|||+++++|++++++++++.| |.+++.|++||||| +.+||.|. +.++++
T Consensus 280 vG~~~~~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G--~~~~~~~~~GHGiG~~lg~~e~P~-i~~~~~ 356 (406)
T PRK14575 280 VGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSG--LPNYNRGHLGHGNGVFLGLEESPF-VSTHAT 356 (406)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--CccccCCCCCCcccCCCCCccCCC-CCCCCC
Confidence 99 89999999999999999999999999999999999999999999 88889999999999 58999995 777899
Q ss_pred ccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeCCCceecCccCcccHh
Q 001503 395 RVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVK 451 (1065)
Q Consensus 395 ~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~evLT~~~pk~l~ 451 (1065)
.+|++||||+||||+| + ++.+|+++||||+||++|+++||. +|++|.
T Consensus 357 ~~Le~GMv~tiEpgiy-~--------~g~gGvriEDtvlVT~~G~e~LT~-~p~~l~ 403 (406)
T PRK14575 357 ESFTSGMVLSLETPYY-G--------YNLGSIMIEDMILINKEGIEFLSK-LPRDLV 403 (406)
T ss_pred CCcCCCCEEEECCeee-c--------CCCcEEEEEeEEEEcCCCcccCCC-CCcccc
Confidence 9999999999999999 4 456899999999999999999996 998875
No 8
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=3.5e-50 Score=471.94 Aligned_cols=389 Identities=17% Similarity=0.262 Sum_probs=295.0
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCC---CCccccc-ccccceEEEcCCcCCcEEEEEECC-----cE
Q 001503 23 INLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPA---SEDLRYL-KSSALNIWLLGYEFPETVMVFMKK-----QI 93 (1065)
Q Consensus 23 id~~~f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~---~~~~~Y~-ks~al~~wLtGye~p~tlllit~~-----~~ 93 (1065)
++..+|..|+++|.+.|... + ++||.++.. +.+++|. ++.+.|+||||+..|++++++.++ ..
T Consensus 1 ~~~~~~~~rR~~l~~~~~~~------~--~~v~~~~~~~~~~~d~~y~Frq~s~F~YltG~~ep~~~lv~~~~~~~~~~~ 72 (438)
T PRK10879 1 MTQQEFQRRRQALLAKMQPG------S--AALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHS 72 (438)
T ss_pred CChHHHHHHHHHHHhhCCCC------c--EEEEeCCCccccCCCCCCCccCCCceeeeeCCCCCCeEEEEecCCCCCCeE
Confidence 45779999999999999862 1 455665552 2345555 789999999999999999888553 25
Q ss_pred EEEEeCCccchHHHHHhhc------cccCCcE-EEEEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCC----
Q 001503 94 QFLCSQKKASLLGMVKRSA------KDAVGAD-VVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARE---- 162 (1065)
Q Consensus 94 ~ll~s~kK~~~le~~~~~~------~~~~~ve-i~~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd---- 162 (1065)
+||+.++ ....+.|.+.. ....+++ +..+ +.++..+..+.. ....+-.....
T Consensus 73 ~Lf~~~~-d~~~e~W~G~~~~~~~a~~~~g~d~v~~~---------~~l~~~l~~~~~-------~~~~~~~~~~~~~~~ 135 (438)
T PRK10879 73 VLFNRVR-DLTAEIWFGRRLGQDAAPEKLGVDRALPF---------SEINQQLYQLLN-------GLDVVYHAQGEYAYA 135 (438)
T ss_pred EEEeCCC-CCCccEEcCcCCCHHHHHHHhCCCEEeeH---------HHHHHHHHHHhc-------CCceEEecCCccccc
Confidence 6777553 33344554320 0112232 2222 223333332221 22334433321
Q ss_pred -CCcHHHHHHHHHHhhc---CCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 001503 163 -TPEGRLLETWADRLQN---SGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSL 238 (1065)
Q Consensus 163 -~~~g~~~~~l~~~l~~---~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~e 238 (1065)
......+..+...... ....++|++++|.++|+|||++||++||+|+++++.++. ++++.++ ||+||.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~-~~~~~~~------pG~tE~e 208 (438)
T PRK10879 136 DEIVFSALEKLRKGSRQNLTAPATLTDWRPWVHEMRLFKSPEEIAVLRRAGEISALAHT-RAMEKCR------PGMFEYQ 208 (438)
T ss_pred hhHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHhcC------CCCcHHH
Confidence 1112233333332211 135688999999999999999999999999999999999 8888887 6999999
Q ss_pred HHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEE
Q 001503 239 LMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLI 318 (1065)
Q Consensus 239 La~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~V 318 (1065)
|++.++..+... |+ ...+|+|||++|.|.+. +|+.++++.|+.| |+|++|+|+.|+|||+|+||||+|
T Consensus 209 i~a~~~~~~~~~-------G~--~~~~~~~iv~~G~na~~-~H~~~~~~~l~~G--DlVliD~G~~~~GY~sDitRT~~v 276 (438)
T PRK10879 209 LEGEIHHEFNRH-------GA--RYPSYNTIVGSGENGCI-LHYTENESEMRDG--DLVLIDAGCEYKGYAGDITRTFPV 276 (438)
T ss_pred HHHHHHHHHHHC-------CC--CCCCCCcEEEEcCcccc-ccCCCCccccCCC--CEEEEEeCeEECCEEEEeEEEEEE
Confidence 999999888753 32 25678999999999877 8999999999999 999999999999999999999999
Q ss_pred -c-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH------------------HhCCccccCCCCCcceee
Q 001503 319 -D-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVE------------------REAPELVPNLTKSAGTGI 378 (1065)
Q Consensus 319 -g-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~------------------~~Gpel~~~~~h~~GHgI 378 (1065)
| +|++|+++|++++++++++++++|||+++++|+.++.+++. +.+ +..+|+|++||+|
T Consensus 277 ~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~--~~~~~~Hg~GH~i 354 (438)
T PRK10879 277 NGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENA--HRPFFMHGLSHWL 354 (438)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhcc--CccccCCCCcccc
Confidence 5 79999999999999999999999999999999999987654 334 6678999999999
Q ss_pred ccccccCCccccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeCCCceecCccCcccHhhhccccC
Q 001503 379 GLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFN 458 (1065)
Q Consensus 379 Gle~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~evLT~~~pk~l~~I~~~~~ 458 (1065)
|+++||.|. +.+++.++|++||||+||||+|..++..+......+|+|+||||+||++|+++||..+|+++.+|+-.|.
T Consensus 355 GldvHd~~~-~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT~~G~e~LT~~~pk~~~~iE~~m~ 433 (438)
T PRK10879 355 GLDVHDVGV-YGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPDEIEALMA 433 (438)
T ss_pred CcCcCcCCC-cCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEECCCcCeEcCccCCCCHHHHHHHHH
Confidence 999999984 5667889999999999999999432222222234479999999999999999999889999999976553
No 9
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=1.5e-48 Score=454.61 Aligned_cols=361 Identities=15% Similarity=0.229 Sum_probs=288.8
Q ss_pred HHHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCcccccccccceEEEcCCcCC------cE---EEEEECC-c-E-EEEE
Q 001503 30 TRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFP------ET---VMVFMKK-Q-I-QFLC 97 (1065)
Q Consensus 30 ~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~ks~al~~wLtGye~p------~t---lllit~~-~-~-~ll~ 97 (1065)
.=.+|+++.|++ .++|+|||+.+. | +.|||||... .+ +.|++.+ + + ++++
T Consensus 11 ~~~~r~r~~M~~------~gldalll~~p~-n-----------i~YlTG~~~~~~~~~r~~~~~v~v~~~d~~~p~~~i~ 72 (405)
T PRK14576 11 AVSRKARVVMER------EGIDALVVTVCD-N-----------FYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIM 72 (405)
T ss_pred HHHHHHHHHHHH------cCCCEEEecccc-c-----------eeeeccccccceeeeccCCeEEEEecCCCCCCcEEEe
Confidence 345789999999 899999999997 5 8999999843 12 2223344 2 4 5565
Q ss_pred eCCccchHHHHHhhccccC--CcEEEEEeccccC--------------ccccHHHHHHHHHhcccCCCCCCCCEEEEeCC
Q 001503 98 SQKKASLLGMVKRSAKDAV--GADVVIHVKAKTD--------------DGVELMDAIFNAVRSQSNVDSGDGPIVGSIAR 161 (1065)
Q Consensus 98 s~kK~~~le~~~~~~~~~~--~vei~~~~kd~~~--------------~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~k 161 (1065)
..- + ...+...+.... .+.++....++.. .....++.+.+.|+++ +..+++||++..
T Consensus 73 ~~~--e-~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~rigve~~ 145 (405)
T PRK14576 73 NEF--E-AASTHFDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDA----GVLDKTIAIELQ 145 (405)
T ss_pred chh--h-hhhhhccccccccccCCceEeecCCcccchhhhccccCCCCcHHHHHHHHHHHHHHh----CCCCCEEEEccC
Confidence 331 1 111110000000 1122221111110 0002236677888763 346789999975
Q ss_pred CCCcHHHHHHHHHHhhcCCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 001503 162 ETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMD 241 (1065)
Q Consensus 162 d~~~g~~~~~l~~~l~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~ 241 (1065)
.++...+..+...++ +++++|++.+|.++|+|||++||++||+|+++++.+|. ++.+.++ ||+||.||++
T Consensus 146 -~~~~~~~~~l~~~~~--~~~~vd~~~~l~~lR~iKs~~EI~~~r~A~~i~~~~~~-~~~~~i~------pG~tE~elaa 215 (405)
T PRK14576 146 -AMSNGGKGVLDKVAP--GLKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIA-SAAKKIR------VGCTAAELTA 215 (405)
T ss_pred -CCCHHHHHHHHhhCC--CCeEEEcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCCHHHHHH
Confidence 567777778888887 89999999999999999999999999999999999999 8999998 6999999999
Q ss_pred HHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-C
Q 001503 242 EAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-A 320 (1065)
Q Consensus 242 ~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-p 320 (1065)
.++..+... +.. ..++.++|++|+++ . +|..|+++.|+.| |+|++|+|+.|+|||||++|||++| |
T Consensus 216 ~~~~~~~~~-------g~~--~~~~~~~v~~G~~~-~-~h~~~~~~~l~~G--d~v~~d~g~~~~GY~sd~tRT~~~G~p 282 (405)
T PRK14576 216 AFKAAVMSF-------PET--NFSRFNLISVGDNF-S-PKIIADTTPAKVG--DLIKFDCGIDVAGYGADLARTFVLGEP 282 (405)
T ss_pred HHHHHHHHc-------CCC--cCCCCCEEEECCcc-c-CCCCCCCcccCCC--CEEEEEeceeECCEEeeeeEEEECCCC
Confidence 999888642 221 24445799999995 3 7888999999999 9999999999999999999999998 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeec--cccccCCccccCCCCcccc
Q 001503 321 TPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIG--LEFRESGLNLNAKNDRVVK 398 (1065)
Q Consensus 321 s~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIG--le~~E~p~~i~~~~~~vLe 398 (1065)
+++|+++|++++++++++++++|||+++++|+.++.+++++.| |..++.|++|||+| +.+||.|. ++++++.+|+
T Consensus 283 ~~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G--~~~~~~~~~GHgiG~~l~~~e~P~-i~~~~~~~Le 359 (405)
T PRK14576 283 DKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSG--LPHYNRGHLGHGDGVFLGLEEVPF-VSTQATETFC 359 (405)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--CccccCCCCCCCCCCCCCcCcCCC-cCCCCCCccC
Confidence 9999999999999999999999999999999999999999999 88888899999999 89999995 8889999999
Q ss_pred CCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeCCCceecCccCcccHh
Q 001503 399 AKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVK 451 (1065)
Q Consensus 399 ~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~evLT~~~pk~l~ 451 (1065)
+||||+|||++|. ++.+|+++||||+||++|+++||. .|++|.
T Consensus 360 ~GMv~~vEp~~y~---------~g~ggvriEDtvlVTe~G~e~LT~-~p~~l~ 402 (405)
T PRK14576 360 PGMVLSLETPYYG---------IGVGSIMLEDMILITDSGFEFLSK-LDRDLR 402 (405)
T ss_pred CCCEEEECCceee---------cCCCEEEEeeEEEECCCccccCCC-CCcccc
Confidence 9999999999994 467899999999999999999997 998874
No 10
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00 E-value=9.7e-48 Score=418.30 Aligned_cols=240 Identities=53% Similarity=0.827 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCC-CcCC
Q 001503 202 IMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAF-DLRP 280 (1065)
Q Consensus 202 I~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~-~l~~ 280 (1065)
|++||+||++++.+|++.+.+.|+.+||++..+||.+|+..++..|.+.++...+++++.+++||+|||+||+++ .+ +
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~y~~iv~sG~~~~~l-~ 79 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQLDWCYPPIIQSGGNYDLL-K 79 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHcCcccCCeEeECcCcccC-C
Confidence 468999999999999779999999999999999999999999999987743324477778899999999999999 67 7
Q ss_pred CccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 001503 281 SAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVE 360 (1065)
Q Consensus 281 h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~ 360 (1065)
|+.++++.+..| ++|++|+|++|+|||||++|||+++|+++|+++|++++++++++++++|||+++++||++++++++
T Consensus 80 h~~~s~~~~~~~--~~vl~d~G~~y~gY~sditRT~~v~p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~ 157 (243)
T cd01091 80 SSSSSDKLLYHF--GVIICSLGARYKSYCSNIARTFLIDPTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIK 157 (243)
T ss_pred CCCCCccccCCC--CEEEEEeCcccCCEeecceEEEEcCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 888888899988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcEEEEeeccccccCCCCC-CCCCeeEEEEEEEEEEeCCCc
Q 001503 361 REAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNK-PKNQMFSLLLADTVIVGENNP 439 (1065)
Q Consensus 361 ~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~-~~~~~~gv~ieDTVlVTe~G~ 439 (1065)
+.+|++..+|+|++||||||++||+|++++++++++|++||||+|+||+|+++++... .+.+.||++|||||+||++|+
T Consensus 158 ~~~~~~~~~~~~~~GHgiGle~hE~~~~l~~~~~~~L~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~~G~ 237 (243)
T cd01091 158 KKKPELEPNFTKNLGFGIGLEFRESSLIINAKNDRKLKKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTEDEP 237 (243)
T ss_pred HhChhHHHhCcCCcccccCcccccCccccCCCCCCCcCCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcCCCC
Confidence 9998899999999999999999999977899999999999999999999987764322 346789999999999999999
Q ss_pred -eecCc
Q 001503 440 -EVVTC 444 (1065)
Q Consensus 440 -evLT~ 444 (1065)
++||.
T Consensus 238 ~~~LT~ 243 (243)
T cd01091 238 AIVLTN 243 (243)
T ss_pred ceecCC
Confidence 99983
No 11
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=1.4e-45 Score=417.65 Aligned_cols=280 Identities=14% Similarity=0.246 Sum_probs=246.9
Q ss_pred cHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHHHHhhcCCCeEEeccCCcccccccCCHHHHHHHHHHHHHH
Q 001503 133 ELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLT 212 (1065)
Q Consensus 133 ~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~~~l~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia 212 (1065)
...+.|.++|.++ +..+++||++.. .++...+..|++.|+ +++++|++.++.++|+|||++||++||+|++++
T Consensus 39 ~~~~~l~~~l~~~----g~~~~rigve~~-~~~~~~~~~l~~~l~--~~~~~d~~~~i~~lR~iKs~~EI~~mr~A~~i~ 111 (323)
T PRK15173 39 SVCNILKDALNDA----RVLNKKIAIDLN-IMSNGGKRVIDAVMP--NVDFVDSSSIFNELRVIKSPWEIKRLRKSAEIT 111 (323)
T ss_pred HHHHHHHHHHHHc----CccCCEEEEecC-ccCHHHHHHHHhhCC--CCeEEEhHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 3445556666653 356789999976 678888999999888 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCCccCCccccccc
Q 001503 213 YNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYD 292 (1065)
Q Consensus 213 ~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~G 292 (1065)
+.+|. ++.+.++ +|+||.||++.++..+... +. ...++.+++++|+++. +|..++++.|+.|
T Consensus 112 ~~~~~-~~~~~i~------~G~tE~el~a~~~~~~~~~-------g~--~~~~~~~~i~~G~~~~--~h~~~~~~~l~~G 173 (323)
T PRK15173 112 EYGIT-EASKLIR------VGCTSAELTAAYKAAVMSK-------SE--THFSRFHLISVGADFS--PKLIPSNTKACSG 173 (323)
T ss_pred HHHHH-HHHHHcc------CCCCHHHHHHHHHHHHHHc-------CC--CCCCCCcEEEECCCCc--cCCCCCCCccCCC
Confidence 99999 8888888 6999999999998777642 21 1234457889998853 6888999999999
Q ss_pred CcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCC
Q 001503 293 SGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLT 371 (1065)
Q Consensus 293 ~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~ 371 (1065)
|+|++|+|+.|+|||+|++|||+|| |+++|+++|++++++++++++++|||+++++|++++++++++.| +..++.
T Consensus 174 --d~V~iD~g~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G--~~~~~~ 249 (323)
T PRK15173 174 --DLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSG--LPNYNR 249 (323)
T ss_pred --CEEEEEeCccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--CccccC
Confidence 9999999999999999999999999 89999999999999999999999999999999999999999999 888888
Q ss_pred CCcceeecc--ccccCCccccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeCCCceecCccCccc
Q 001503 372 KSAGTGIGL--EFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNPEVVTCKSSKA 449 (1065)
Q Consensus 372 h~~GHgIGl--e~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~evLT~~~pk~ 449 (1065)
|++|||||+ .+||.|. +.++++.+|++||||+||||+| + ++.+|+++||||+||++|+++||. .|++
T Consensus 250 ~~~GHGiG~~lg~~E~P~-i~~~~~~~Le~GMV~tiEPgiy-~--------~g~ggvriEDtvlVTe~G~e~LT~-~p~~ 318 (323)
T PRK15173 250 GHLGHGNGVFLGLEESPF-VSTHATESFTSGMVLSLETPYY-G--------YNLGSIMIEDMILINKEGIEFLSK-LPRD 318 (323)
T ss_pred CCCCCcCCCCCCcCCCCC-CCCCCCCccCCCCEEEECCEEE-c--------CCCcEEEEeeEEEEcCCcceeCCC-CCcc
Confidence 999999996 8999995 6778889999999999999999 3 356899999999999999999997 9988
Q ss_pred Hhh
Q 001503 450 VKD 452 (1065)
Q Consensus 450 l~~ 452 (1065)
|..
T Consensus 319 l~~ 321 (323)
T PRK15173 319 LVS 321 (323)
T ss_pred cee
Confidence 754
No 12
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=3e-43 Score=412.69 Aligned_cols=373 Identities=14% Similarity=0.108 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCC----CCccccc-ccccceEEEcCCc-CCcEEEEEECC-c-EEEEEe
Q 001503 27 NFSTRLKALYSHWNKHKSDYWGSADVLAIATPPA----SEDLRYL-KSSALNIWLLGYE-FPETVMVFMKK-Q-IQFLCS 98 (1065)
Q Consensus 27 ~f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~----~~~~~Y~-ks~al~~wLtGye-~p~tlllit~~-~-~~ll~s 98 (1065)
.|.+.++++.+.+++.. .-.+.+++||..|.. +.++.|. ++.+.++||||+. .|++++++..+ + ..+|+.
T Consensus 7 ~~~~~~~~~~~r~~~~~--~~~~~~~i~l~~g~~~~~~~~D~~~~Frq~s~F~yl~G~~~~p~~~~~i~~~~~~~~~l~~ 84 (443)
T PRK13607 7 LYKEHIATLQQRTRDAL--AREGLDALLIHSGELHRVFLDDHDYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYQ 84 (443)
T ss_pred HHHHHHHHHHHHHHHHH--hccCCCEEEEECCCcccccCCCCCCCcCcCCCcchhcCCCCCCCeEEEEEeCCCCEEEEEe
Confidence 45555555555553210 004567888888873 1344555 8899999999996 79999988542 2 334443
Q ss_pred CCccchHHHHHhhccccCCcEEE--EEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHHHHh
Q 001503 99 QKKASLLGMVKRSAKDAVGADVV--IHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRL 176 (1065)
Q Consensus 99 ~kK~~~le~~~~~~~~~~~vei~--~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~~~l 176 (1065)
+. . .|.+... ..-+.+ .+. .+.- ...+.+...|.. ....+.+.........+ . .+
T Consensus 85 ~~--d---~W~g~~~--~~~~~~~~~~~---~~~~-~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~----~-~~ 141 (443)
T PRK13607 85 PV--D---YWHNVEP--LPESFWTEEVD---IKAL-TKADGIASLLPA-------DRGNVAYIGEVPERALA----L-GF 141 (443)
T ss_pred cC--c---cccCCCC--CchHHHHHhcC---hHhc-ccHHHHHHhhcc-------CCCceEEeccccccccc----c-cC
Confidence 42 2 2432210 000000 010 0000 234455555552 23334443221110000 0 01
Q ss_pred hcCCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccc
Q 001503 177 QNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVK 256 (1065)
Q Consensus 177 ~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~ 256 (1065)
........++...|..+|+|||++||++||+|+++++.++. ++.+.++ ||+||.+|++.+.....
T Consensus 142 ~~~~~~~~~l~~~l~~lR~iKs~~EI~~mr~A~~i~~~a~~-~~~~~i~------pG~tE~ei~~~~~~~~~-------- 206 (443)
T PRK13607 142 EASNINPKGVLDYLHYHRAYKTDYELACMREAQKIAVAGHR-AAKEAFR------AGMSEFDINLAYLTATG-------- 206 (443)
T ss_pred cccccChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHHhh------cCCCHHHHHHHHHHHhC--------
Confidence 10023456678888999999999999999999999999999 8999998 69999999886543321
Q ss_pred cCCCCCCCCCCCEEEeCCCCCcCCCccCCcc-cccccCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHH
Q 001503 257 LRAENVDICYPPIFQSGGAFDLRPSAASNDE-LLYYDSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAH 335 (1065)
Q Consensus 257 ~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r-~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~ 335 (1065)
.+...++|++||++|.|++. +|+.++++ .++.| |+|++|+|+.|+|||||+||||+.+++.+++++|+++++||
T Consensus 207 --~~~~~~~y~~iva~G~naa~-~H~~~~~~~~~~~G--d~vliD~Ga~~~GY~sDiTRTf~g~~~~~~~~ly~~v~~aq 281 (443)
T PRK13607 207 --QRDNDVPYGNIVALNEHAAV-LHYTKLDHQAPAEM--RSFLIDAGAEYNGYAADITRTYAAKEDNDFAALIKDVNKEQ 281 (443)
T ss_pred --CCCcCCCCCcEEEecCcceE-ecCCccCCCCCCCC--CEEEEEeeEEECCEEecceEEEecCCCHHHHHHHHHHHHHH
Confidence 12235789999999999887 89888875 67888 99999999999999999999999447899999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHH----HhCCc------------c-ccCCCCCcceeeccccccCCcccc--------
Q 001503 336 EAAIGALKPGNKVSAAYQAALSVVE----REAPE------------L-VPNLTKSAGTGIGLEFRESGLNLN-------- 390 (1065)
Q Consensus 336 ~a~i~~lrPGv~~~dV~~aa~~~l~----~~Gpe------------l-~~~~~h~~GHgIGle~~E~p~~i~-------- 390 (1065)
+++++++|||++++||+.++.+++. +.|.. + ..+|+|++||+|||++||.+.+..
T Consensus 282 ~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~~~~~~~~~~~~ 361 (443)
T PRK13607 282 LALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAGFMQDDRGTHLA 361 (443)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCCccccccccccc
Confidence 9999999999999999999987664 34410 1 247899999999999999853110
Q ss_pred -----C--CCCccccCCcEEEEeeccccccC--CCC-----------C---CCCCeeEEEEEEEEEEeCCCceecCc
Q 001503 391 -----A--KNDRVVKAKMIFNVSIGFQNLQN--QTN-----------K---PKNQMFSLLLADTVIVGENNPEVVTC 444 (1065)
Q Consensus 391 -----~--~~~~vLe~GMVfsIEpg~~~l~~--~~~-----------~---~~~~~~gv~ieDTVlVTe~G~evLT~ 444 (1065)
+ ++.++|++||||+||||+|..+. ..+ . .-.+.+|+||||+|+||++|+++||.
T Consensus 362 ~~~~~~~l~~~~~L~~GmV~TvEPGiY~~~~ll~~~~~~~~~~~in~~~i~~~~~~GGvRIED~vlVT~~G~e~Lt~ 438 (443)
T PRK13607 362 APEKHPYLRCTRVLEPGMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHENGVENMTR 438 (443)
T ss_pred ccccccccccCCcCCCCcEEEECCeeeeChhhhchhhhhhhhhhccHHHHHhhcCCCEEeecceEEEcCCCCeECCh
Confidence 1 35689999999999999995321 000 0 01246799999999999999999997
No 13
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-43 Score=382.02 Aligned_cols=394 Identities=17% Similarity=0.245 Sum_probs=296.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCC----CCccccc-ccccceEEEcCCcCCcEEEEEEC--Cc-
Q 001503 21 YSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPA----SEDLRYL-KSSALNIWLLGYEFPETVMVFMK--KQ- 92 (1065)
Q Consensus 21 ~~id~~~f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~----~~~~~Y~-ks~al~~wLtGye~p~tlllit~--~~- 92 (1065)
+.|+..+|..|+.+|.+.+.+. +++|+.+.+ +...+|. .+++.++||||+..|++++++++ ..
T Consensus 60 Pgis~~Ey~~RR~rl~~ll~~~---------a~~il~sap~~~msg~ipY~f~Qd~df~YLtGc~EP~~vl~l~~~d~~s 130 (488)
T KOG2414|consen 60 PGISATEYKERRSRLMSLLPAN---------AMVILGSAPVKYMSGAIPYTFRQDNDFYYLTGCLEPDAVLLLLKGDERS 130 (488)
T ss_pred CCccHHHHHHHHHHHHHhCCcc---------cEEEEccCchhhhcCccceeeecCCCeEEEeccCCCCeeEEEeeccccc
Confidence 6689999999999999999882 244444431 3457787 88999999999999999988863 22
Q ss_pred --EEEEEeCCccchHHHHHhhccccCCcEE--EEEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHH
Q 001503 93 --IQFLCSQKKASLLGMVKRSAKDAVGADV--VIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRL 168 (1065)
Q Consensus 93 --~~ll~s~kK~~~le~~~~~~~~~~~vei--~~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~ 168 (1065)
..+|. +.|..+.+.|.+.. .+.+. ...+.+.. .+...+...|.+.+ .....|..+....-....
T Consensus 131 ~~~~lf~-p~kdP~~e~WeG~r---tG~~~a~~if~v~ea----~~~s~l~~~L~k~~----~~~~~i~~d~~ss~a~s~ 198 (488)
T KOG2414|consen 131 VAYDLFM-PPKDPTAELWEGPR---TGTDGASEIFGVDEA----YPLSGLAVFLPKMS----ALLYKIWQDKASSKASSA 198 (488)
T ss_pred ceeeEec-CCCCccHHhhcCcc---ccchhhhhhhcchhh----cchhhHHHHHHHHH----hhhhhhhhhhccchhhhH
Confidence 34555 55678888898653 22221 11221111 33444444444320 011223333221111122
Q ss_pred HHHHHHHhhc--CCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 001503 169 LETWADRLQN--SGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKA 246 (1065)
Q Consensus 169 ~~~l~~~l~~--~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~ 246 (1065)
++.++..+.. ..-+++.++.++.++|.||||.|+++||.||.|++.++. ..+-.-+ +...|..|.+.++..
T Consensus 199 ~~~~~dl~~~~~~~~~~~~~~~li~~lRlIKSpaEl~~Mr~a~~I~sq~~~-~~m~~sr------~~~~E~~l~a~~eye 271 (488)
T KOG2414|consen 199 LKNMQDLLGFQSKSSTVRPVSNLIERLRLIKSPAELELMREACNIASQTFS-ETMFGSR------DFHNEAALSALLEYE 271 (488)
T ss_pred HHHHHhhhhhcccCcccccHHHHHHHHHccCCHHHHHHHHHHhhhhhHHHH-HHHhhcc------CCcchhhHhhhhhhh
Confidence 2223333322 134588999999999999999999999999999999877 4444433 588999999999998
Q ss_pred HHccCccccccCCCCCCCCCCCEEEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEcC--CHHH
Q 001503 247 ILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDA--TPLQ 324 (1065)
Q Consensus 247 l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgp--s~eq 324 (1065)
++.. |++ ..+|+|+|+.|.|+.. .|+.-++..|.+| ++|++|.|+.++||+|||||||.+.. |+-|
T Consensus 272 ~r~r-------Gad--~~AYpPVVAgG~na~t-IHY~~Nnq~l~d~--emVLvDaGcelgGYvSDITRTWP~sGkFs~~Q 339 (488)
T KOG2414|consen 272 CRRR-------GAD--RLAYPPVVAGGKNANT-IHYVRNNQLLKDD--EMVLVDAGCELGGYVSDITRTWPISGKFSDAQ 339 (488)
T ss_pred eeec-------Ccc--ccccCCeeecCcccce-EEEeecccccCCC--cEEEEecCcccCceEccceeccCCCCccCcHH
Confidence 8742 443 6899999999988865 8999999999999 99999999999999999999999974 9999
Q ss_pred HHHHHHHHHHHHHHHHhCCC--CCChhHHHHHHHHHHHH----hCC---------ccccCCCCCcceeeccccccCCccc
Q 001503 325 SKVYEVLLKAHEAAIGALKP--GNKVSAAYQAALSVVER----EAP---------ELVPNLTKSAGTGIGLEFRESGLNL 389 (1065)
Q Consensus 325 ~~~y~~llea~~a~i~~lrP--Gv~~~dV~~aa~~~l~~----~Gp---------el~~~~~h~~GHgIGle~~E~p~~i 389 (1065)
+++|++++.+|+.+|+.++| |.++.++|......+.+ .|. .....++|++||-+||++|+.|.+
T Consensus 340 r~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLGmDVHD~p~v- 418 (488)
T KOG2414|consen 340 RDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELGIRKTDREEMIQAEKLCPHHVGHYLGMDVHDCPTV- 418 (488)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHhCcccchHHHHHhhhhcCCcccchhcCcccccCCCC-
Confidence 99999999999999999999 99999999988766544 342 123467999999999999999942
Q ss_pred cCCCCccccCCcEEEEeeccccccCCC-CCCCCCeeEEEEEEEEEEeCCCceecCccCcccHhhhccccC
Q 001503 390 NAKNDRVVKAKMIFNVSIGFQNLQNQT-NKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFN 458 (1065)
Q Consensus 390 ~~~~~~vLe~GMVfsIEpg~~~l~~~~-~~~~~~~~gv~ieDTVlVTe~G~evLT~~~pk~l~~I~~~~~ 458 (1065)
.-..+|+|||||+||||+| +|... +++.-.+.|+||||.|+|+++|+++||..+||++.+|.--++
T Consensus 419 --~r~~pL~pg~ViTIEPGvY-IP~d~d~P~~FrGIGiRIEDDV~i~edg~evLT~a~pKei~~ie~l~~ 485 (488)
T KOG2414|consen 419 --SRDIPLQPGMVITIEPGVY-IPEDDDPPEEFRGIGIRIEDDVAIGEDGPEVLTAACPKEIIEIERLMK 485 (488)
T ss_pred --CCCccCCCCceEEecCcee-cCccCCCchHhcCceEEeecceEeccCCceeehhcccCCHHHHHHHHh
Confidence 3468899999999999999 77544 444456689999999999999999999999999999864443
No 14
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.8e-41 Score=376.35 Aligned_cols=240 Identities=12% Similarity=0.127 Sum_probs=210.1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeC
Q 001503 194 FAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSG 273 (1065)
Q Consensus 194 RaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG 273 (1065)
..|||++||++||+|++|++.++. ++.+.++ ||+||.+|++.++..+...+.+...+|..+...+|++++++|
T Consensus 2 ~~iKs~~EI~~mr~A~~i~~~~~~-~~~~~i~------pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G 74 (286)
T PRK07281 2 ITLKSAREIEAMDRAGDFLASIHI-GLRDLIK------PGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCG 74 (286)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH-HHHHHCc------CCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEe
Confidence 479999999999999999999998 8888888 699999999999999886654443445443457899999999
Q ss_pred CCCCcCCCccCCcccccccCcceEEEEccc---------------------------eeCCeEeeeEEEEEEc-CCHHHH
Q 001503 274 GAFDLRPSAASNDELLYYDSGSVIICAVGS---------------------------RYNSYCSNIARSFLID-ATPLQS 325 (1065)
Q Consensus 274 ~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~---------------------------~y~GY~sditRT~~Vg-ps~eq~ 325 (1065)
.|.++ +|+.|+++.|++| |+|++|+|+ .|+|||+|++|||++| |+++|+
T Consensus 75 ~n~~~-~H~~p~~~~l~~G--d~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~~~~~ 151 (286)
T PRK07281 75 LNDEV-AHAFPRHYILKEG--DLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVK 151 (286)
T ss_pred ccccc-cCCCCCCcCcCCC--CEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCCHHHH
Confidence 99987 8999999999999 999999998 4999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccc---cCCCCccccCCcE
Q 001503 326 KVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNL---NAKNDRVVKAKMI 402 (1065)
Q Consensus 326 ~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i---~~~~~~vLe~GMV 402 (1065)
++|+++++|+.++++++|||++++||++++++++++.| |.. +.|.+|||||+++||.|.+. .+++..+|++|||
T Consensus 152 ~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G--~~~-~~~~~GHGIGl~~hE~P~i~~~~~~~~~~~Le~GMV 228 (286)
T PRK07281 152 NLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRG--YGV-VRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMV 228 (286)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcC--Ccc-CCCeeeeeCCCccCCCCcCCCcccCCCCCEECCCCE
Confidence 99999999999999999999999999999999999999 775 78999999999999999532 2567889999999
Q ss_pred EEEeeccccccCC--------CCC--CCCCeeEEEEEEEEEEeCCCceecCccCcc
Q 001503 403 FNVSIGFQNLQNQ--------TNK--PKNQMFSLLLADTVIVGENNPEVVTCKSSK 448 (1065)
Q Consensus 403 fsIEpg~~~l~~~--------~~~--~~~~~~gv~ieDTVlVTe~G~evLT~~~pk 448 (1065)
|+|||++| ++.. .|. ..++.+|+++||||+||++|+++||. .++
T Consensus 229 ~tiEPgiy-~~~~~~~~~~~~gw~~~~~~g~~gvr~EdtvlVT~~G~e~LT~-~~~ 282 (286)
T PRK07281 229 LTIEPMIN-TGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVILTS-QGE 282 (286)
T ss_pred EEECCeeE-cCCcceecccCCCceEEecCCCcEEEeccEEEEeCCcceECCC-CCc
Confidence 99999998 4211 122 23567899999999999999999996 544
No 15
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.1e-40 Score=364.63 Aligned_cols=233 Identities=16% Similarity=0.127 Sum_probs=203.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeC
Q 001503 194 FAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSG 273 (1065)
Q Consensus 194 RaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG 273 (1065)
..||||+||++||+||++++.++. ++.+.++ ||+||.||++.++..+...+.... .....+|+++|++|
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~-~~~~~~~------~G~tE~el~~~~~~~~~~~G~~~~----~~~~~~~~~~i~~g 70 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHR-EIAKIMK------PGITTKEINTFVEAYLEKHGATSE----QKGYNGYPYAICAS 70 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHH-HHHhhcC------CCCcHHHHHHHHHHHHHHcCCccc----ccccCCCCcceEec
Confidence 479999999999999999999999 8888888 699999999999999986532110 01134688889999
Q ss_pred CCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHH
Q 001503 274 GAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAY 352 (1065)
Q Consensus 274 ~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~ 352 (1065)
.|..+ +|+.|+++.|+.| |+|++|+|+.|.|||+|++|||++| |+++|+++|+++++++++++++++||++++||+
T Consensus 71 ~n~~~-~H~~p~~~~l~~G--d~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~ 147 (248)
T PRK12897 71 VNDEM-CHAFPADVPLTEG--DIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIG 147 (248)
T ss_pred cCCEe-ecCCCCCcccCCC--CEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Confidence 99887 8999999999999 9999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCccccCCCCCcceeeccccccCCccc---cCCCCccccCCcEEEEeeccccccC-------CCCC--CC
Q 001503 353 QAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNL---NAKNDRVVKAKMIFNVSIGFQNLQN-------QTNK--PK 420 (1065)
Q Consensus 353 ~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i---~~~~~~vLe~GMVfsIEpg~~~l~~-------~~~~--~~ 420 (1065)
.++.+++++.| |.. +.|.+|||||+.+||.|.+. .+++..+|++||||+||||+| +.. +.|+ ..
T Consensus 148 ~a~~~~~~~~g--~~~-~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~-~~~~~~~~~~~~~~~~~~ 223 (248)
T PRK12897 148 YAIESYVANEG--FSV-ARDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVN-VGMRYSKVDLNGWTARTM 223 (248)
T ss_pred HHHHHHHHHcC--Ccc-CCCeEECccCCcccCCCccCCCCCCCCCCCcCCCCEEEECCeEe-cCCCceEECCCCcEEEcC
Confidence 99999999999 763 47889999999999999643 246678999999999999998 311 1232 23
Q ss_pred CCeeEEEEEEEEEEeCCCceecCc
Q 001503 421 NQMFSLLLADTVIVGENNPEVVTC 444 (1065)
Q Consensus 421 ~~~~gv~ieDTVlVTe~G~evLT~ 444 (1065)
++.+|+++||||+||++|+++||.
T Consensus 224 ~g~~g~r~edtv~Vt~~G~e~lt~ 247 (248)
T PRK12897 224 DGKLSAQYEHTIAITKDGPIILTK 247 (248)
T ss_pred CCCeEeecceEEEEeCCccEEeec
Confidence 577899999999999999999995
No 16
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=2.2e-40 Score=369.53 Aligned_cols=244 Identities=18% Similarity=0.206 Sum_probs=205.1
Q ss_pred CCcccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCC
Q 001503 188 NGLSELFA-VKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICY 266 (1065)
Q Consensus 188 ~~l~~lRa-VKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y 266 (1065)
+.+.+++. |||++||++||+|++|++.+|. ++.+.++ ||+||.||++.++..+...+..+..++. ...+|
T Consensus 34 ~~~~~~~i~IKs~~EIe~~R~Aa~I~~~a~~-a~~~~ir------pG~tE~Eiaa~~~~~~~~~G~~~~~~~~--~~~~f 104 (291)
T PRK12318 34 LYASQYDIIIKTPEQIEKIRKACQVTARILD-ALCEAAK------EGVTTNELDELSRELHKEYNAIPAPLNY--GSPPF 104 (291)
T ss_pred hccCCCceEECCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCCHHHHHHHHHHHHHHcCCCcccccc--CCCCC
Confidence 44455665 9999999999999999999999 8999998 6999999999888777654322211111 13468
Q ss_pred CCEEEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCC
Q 001503 267 PPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPG 345 (1065)
Q Consensus 267 ~pIV~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPG 345 (1065)
++++++|.|..+ +|+.|++++|+.| |+|++|+|+.|.||++|++|||++| |+++|+++|++++++++++++++|||
T Consensus 105 ~~~v~~g~n~~~-~H~~p~~~~l~~G--D~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG 181 (291)
T PRK12318 105 PKTICTSLNEVI-CHGIPNDIPLKNG--DIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPG 181 (291)
T ss_pred CcceEeecccee-ecCCCCCCccCCC--CEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 889999999876 8999999999999 9999999999999999999999999 89999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCcccc--CCCCccccCCcEEEEeeccccccCC--------
Q 001503 346 NKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLN--AKNDRVVKAKMIFNVSIGFQNLQNQ-------- 415 (1065)
Q Consensus 346 v~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~--~~~~~vLe~GMVfsIEpg~~~l~~~-------- 415 (1065)
+++++|+.++.+++++.| +.. ..|.+|||||+++||.|.+.+ +++..+|++||||+|||++| ++..
T Consensus 182 ~~~~dv~~a~~~~~~~~G--~~~-~~~~~GHgIGl~~hE~P~i~~~~~~~~~~L~~GMV~~iEP~i~-~~~~~g~~~~~~ 257 (291)
T PRK12318 182 IPLYEIGEVIENCADKYG--FSV-VDQFVGHGVGIKFHENPYVPHHRNSSKIPLAPGMIFTIEPMIN-VGKKEGVIDPIN 257 (291)
T ss_pred CCHHHHHHHHHHHHHHcC--Ccc-CCCcccCCcCccccCCCcccCcCCCCCCEeCCCCEEEECCEEE-cCCCceEEecCC
Confidence 999999999999999999 543 346799999999999996433 35678999999999999998 5421
Q ss_pred CCC--CCCCeeEEEEEEEEEEeCCCceecCccCcc
Q 001503 416 TNK--PKNQMFSLLLADTVIVGENNPEVVTCKSSK 448 (1065)
Q Consensus 416 ~~~--~~~~~~gv~ieDTVlVTe~G~evLT~~~pk 448 (1065)
.|. ..++..++++||||+||++|+|+||. .|+
T Consensus 258 ~~~~~~~~g~~~~~~edtv~VTe~G~e~LT~-~~~ 291 (291)
T PRK12318 258 HWEARTCDNQPSAQWEHTILITETGYEILTL-LDK 291 (291)
T ss_pred CcEEEecCCCeeeeeeeEEEEcCCcceeCCC-CCC
Confidence 111 13455677899999999999999997 774
No 17
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=5.5e-40 Score=358.81 Aligned_cols=232 Identities=21% Similarity=0.270 Sum_probs=200.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCC
Q 001503 195 AVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGG 274 (1065)
Q Consensus 195 aVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~ 274 (1065)
+|||++||++||+|++|++.+|. ++.+.++ ||+||.||++.++..+...|.... ......|++++++|.
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~-~~~~~i~------~G~tE~el~~~~~~~~~~~G~~~~----~~~~~~~~~~~~~~~ 70 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLE-ELEREVK------PGVSTKELDRIAKDFIEKHGAKPA----FLGYYGFPGSVCISV 70 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH-HHHHhcc------CCCCHHHHHHHHHHHHHHCCCCcc----ccCCCCCCceeEecc
Confidence 79999999999999999999999 8888888 699999999999998876532210 011246788889999
Q ss_pred CCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHH
Q 001503 275 AFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQ 353 (1065)
Q Consensus 275 ~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~ 353 (1065)
|..+ +|+.|+++.|+.| |+|++|+|+.|+|||+|++|||++| |+++|+++|++++++++++++++|||+++++|++
T Consensus 71 n~~~-~H~~~~~~~l~~G--d~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~ 147 (247)
T TIGR00500 71 NEVV-IHGIPDKKVLKDG--DIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGA 147 (247)
T ss_pred ccEE-EecCCCCcccCCC--CEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8766 8999999999999 9999999999999999999999998 7999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccccCCCCCcceeeccccccCCcccc---CCCCccccCCcEEEEeeccccccC-------CCCC--CCC
Q 001503 354 AALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLN---AKNDRVVKAKMIFNVSIGFQNLQN-------QTNK--PKN 421 (1065)
Q Consensus 354 aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~---~~~~~vLe~GMVfsIEpg~~~l~~-------~~~~--~~~ 421 (1065)
++++++++.| +.. +.+.+|||||+.+||.|.+.+ ++++.+|++||||+|||++| ++. ..|. .++
T Consensus 148 ~~~~~~~~~g--~~~-~~~~~GHgiG~~~~e~p~i~~~~~~~~~~~l~~gmv~~iEp~i~-~~~~~~~~~~~~~~~~~~~ 223 (247)
T TIGR00500 148 AIQKYAEAKG--FSV-VREYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVN-TGTEEITTAADGWTVKTKD 223 (247)
T ss_pred HHHHHHHHcC--CEe-ccCccCCccCcccCCCCccCCcCcCCCCCEecCCCEEEEeeEEE-cCCCcEEECCCCCEEEccC
Confidence 9999999999 654 457799999999999995332 45689999999999999998 431 1121 235
Q ss_pred CeeEEEEEEEEEEeCCCceecCc
Q 001503 422 QMFSLLLADTVIVGENNPEVVTC 444 (1065)
Q Consensus 422 ~~~gv~ieDTVlVTe~G~evLT~ 444 (1065)
+.+|+++||||+||++|+++||.
T Consensus 224 ~~~g~ried~v~Vt~~G~e~Lt~ 246 (247)
T TIGR00500 224 GSLSAQFEHTIVITDNGPEILTE 246 (247)
T ss_pred CCeEEEEeEEEEEcCCccEEccC
Confidence 67899999999999999999985
No 18
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=1.1e-39 Score=357.30 Aligned_cols=238 Identities=22% Similarity=0.274 Sum_probs=205.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEe
Q 001503 193 LFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQS 272 (1065)
Q Consensus 193 lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~S 272 (1065)
+.+|||++||++||+|+++++.++. ++.+.++ ||+||.+|++.+...+...+... .. ....+|++++++
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~-~a~~~i~------pG~se~ela~~~~~~~~~~G~~~---~~-~~~~~~~~~~~~ 70 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLD-EIEPHVK------PGVTTKELDRIAEEYIRDQGAIP---AP-LGYHGFPKSICT 70 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHH-HHHHHcc------CCCCHHHHHHHHHHHHHHCCCEe---cc-cCCCCCCcCeEe
Confidence 4689999999999999999999998 8999998 69999999999988887542110 00 013467888999
Q ss_pred CCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHH
Q 001503 273 GGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAA 351 (1065)
Q Consensus 273 G~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV 351 (1065)
|.++.. +|+.|+++.|+.| |+|++|+|+.|.||++|++||+++| |+++|+++|++++++++++++++|||+++++|
T Consensus 71 g~~~~~-~h~~~~~~~l~~G--d~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv 147 (252)
T PRK05716 71 SVNEVV-CHGIPSDKVLKEG--DIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDI 147 (252)
T ss_pred ccccee-ecCCCCCcccCCC--CEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 998765 7999999999999 9999999999999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccccCCCCCcceeeccccccCCccc---cCCCCccccCCcEEEEeeccccccCC-------CCC--C
Q 001503 352 YQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNL---NAKNDRVVKAKMIFNVSIGFQNLQNQ-------TNK--P 419 (1065)
Q Consensus 352 ~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i---~~~~~~vLe~GMVfsIEpg~~~l~~~-------~~~--~ 419 (1065)
++++.+++++.| +.. +.|.+|||||+.+||.|.++ .++++.+|++||||+|||++| ++.. .|. .
T Consensus 148 ~~~~~~~~~~~g--~~~-~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~vEp~i~-~~~~~~~~~~~~~~~~~ 223 (252)
T PRK05716 148 GHAIQKYAEAEG--FSV-VREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMIN-AGKREVKTLKDGWTVVT 223 (252)
T ss_pred HHHHHHHHHHcC--Cee-ecCccccccCCccCCCCccCcCCCCCCCCEecCCCEEEEccEEE-cCCCceEEcCCCCEEEc
Confidence 999999999999 654 45779999999999999643 457889999999999999998 4211 111 2
Q ss_pred CCCeeEEEEEEEEEEeCCCceecCccCccc
Q 001503 420 KNQMFSLLLADTVIVGENNPEVVTCKSSKA 449 (1065)
Q Consensus 420 ~~~~~gv~ieDTVlVTe~G~evLT~~~pk~ 449 (1065)
+++.+|+++||||+||++|+++||. .|++
T Consensus 224 ~~g~~g~~~ed~v~Vt~~G~e~Lt~-~~~~ 252 (252)
T PRK05716 224 KDGSLSAQYEHTVAVTEDGPEILTL-RPEE 252 (252)
T ss_pred cCCCcEEeeeeEEEEcCCccEEeeC-CCCC
Confidence 3577899999999999999999997 7753
No 19
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=4.4e-39 Score=353.14 Aligned_cols=235 Identities=16% Similarity=0.202 Sum_probs=204.1
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEE
Q 001503 192 ELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQ 271 (1065)
Q Consensus 192 ~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~ 271 (1065)
++++|||++||++||+|+++++.++. ++.+.++ ||+||.+|++.+...+.+.+... ......+|+++++
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~-~~~~~i~------pG~te~el~~~~~~~~~~~G~~~----~~~~~~~~~~~~~ 74 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALK-EMGKAVE------PGMTTKELDRIAEKRLEEHGAIP----SPEGYYGFPGSTC 74 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHH-HHHhhcc------CCCCHHHHHHHHHHHHHHCCCEe----CcccCCCCCcceE
Confidence 56789999999999999999999999 8888888 69999999999998887643211 1112356888888
Q ss_pred eCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhH
Q 001503 272 SGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSA 350 (1065)
Q Consensus 272 SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~d 350 (1065)
+|.|..+ +|+.|+++.|+.| |+|++|+|+.|+||++|++||+++| |+++|+++|+++++++.++++++|||+++++
T Consensus 75 ~~~n~~~-~h~~p~~~~l~~G--d~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~ 151 (255)
T PRK12896 75 ISVNEEV-AHGIPGPRVIKDG--DLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRPLND 151 (255)
T ss_pred ecCCCee-EecCCCCccCCCC--CEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 9988876 7999999999999 9999999999999999999999998 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccc----cCCCCccccCCcEEEEeeccccccCC-------CCC-
Q 001503 351 AYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNL----NAKNDRVVKAKMIFNVSIGFQNLQNQ-------TNK- 418 (1065)
Q Consensus 351 V~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i----~~~~~~vLe~GMVfsIEpg~~~l~~~-------~~~- 418 (1065)
|++++.+++++.| |. .+.|.+|||||+.+||.|..+ .++++.+|++||||+|||+++ +... .|.
T Consensus 152 v~~~~~~~~~~~G--~~-~~~~~~GHgiG~~~he~p~~~~~~~~~~~~~~le~GmV~~iEp~i~-~g~~~~~~~~~~~~~ 227 (255)
T PRK12896 152 IGRAIEDFAKKNG--YS-VVRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLN-LGAKDAETLDDGWTV 227 (255)
T ss_pred HHHHHHHHHHHcC--CE-eccCcccCCcCcccccCCCccccCCCCCCCCEecCCcEEEEeceEE-cCCCceEEcCCCCEE
Confidence 9999999999999 65 356889999999999999544 256789999999999999997 3222 122
Q ss_pred -CCCCeeEEEEEEEEEEeCCCceecCc
Q 001503 419 -PKNQMFSLLLADTVIVGENNPEVVTC 444 (1065)
Q Consensus 419 -~~~~~~gv~ieDTVlVTe~G~evLT~ 444 (1065)
..++.+|+++||||+||++|+++||.
T Consensus 228 ~~~~~~~~~~~edtv~vt~~G~e~Lt~ 254 (255)
T PRK12896 228 VTPDKSLSAQFEHTVVVTRDGPEILTD 254 (255)
T ss_pred EecCCCeEEEEEEEEEEcCCcceecCC
Confidence 25678999999999999999999995
No 20
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=5.7e-39 Score=346.92 Aligned_cols=221 Identities=16% Similarity=0.168 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCC-CCCCCCCEEEeCCCCCcCC
Q 001503 202 IMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAEN-VDICYPPIFQSGGAFDLRP 280 (1065)
Q Consensus 202 I~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~-~~~~y~pIV~SG~~~~l~~ 280 (1065)
|++||+|++|++.+|. ++.+.++ ||+||.||++.+.+.+.+.+.. +... ....+.|+|+||.|..+ +
T Consensus 1 I~~ir~Aa~i~d~~~~-~~~~~i~------pG~tE~ei~a~~~~~~~~~ga~----~~~~~~~~~~~~~v~~G~~~~~-~ 68 (228)
T cd01090 1 IALIRHGARIADIGGA-AVVEAIR------EGVPEYEVALAGTQAMVREIAK----TFPEVELMDTWTWFQSGINTDG-A 68 (228)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHhc------CCCCHHHHHHHHHHHHHHcCCc----cCCcccccCcceEEEeeccccc-c
Confidence 5799999999999999 8999998 6999999999998888754211 0000 00112378999999887 8
Q ss_pred CccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 001503 281 SAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVV 359 (1065)
Q Consensus 281 h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l 359 (1065)
|+.++++.|+.| |+|++|+|+.|+|||+|++|||++| |+++|+++|++++++++++++++|||+++++|++++++++
T Consensus 69 H~~~~~r~l~~G--D~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~ 146 (228)
T cd01090 69 HNPVTNRKVQRG--DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMY 146 (228)
T ss_pred CCCCCCcccCCC--CEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHhCCccccCCCCCcceeeccccccCCc----cccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 360 EREAPELVPNLTKSAGTGIGLEFRESGL----NLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 360 ~~~Gpel~~~~~h~~GHgIGle~~E~p~----~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
++.| |..++.|++|||||+.+||.|. .+..+++.+|++||||+|||++| ++. ..++.+|+++||||+||
T Consensus 147 ~~~G--~~~~~~~~~GHgiGl~~he~~~~~g~~~~~~~~~~Le~GMV~~iEP~i~-~~~----~~~g~gG~ried~v~Vt 219 (228)
T cd01090 147 REHD--LLRYRTFGYGHSFGVLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIM-LPE----GQPGAGGYREHDILVIN 219 (228)
T ss_pred HHcC--CCcccccccCcccccccccCCCccccccCCCCCCccCCCCEEEECCEEe-ecc----cCCCCcEEEeeeEEEEC
Confidence 9999 9999999999999999999873 35667889999999999999999 431 01356899999999999
Q ss_pred CCCceecC
Q 001503 436 ENNPEVVT 443 (1065)
Q Consensus 436 e~G~evLT 443 (1065)
++|+++||
T Consensus 220 ~~G~e~Lt 227 (228)
T cd01090 220 ENGAENIT 227 (228)
T ss_pred CCccccCc
Confidence 99999998
No 21
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1.8e-38 Score=365.06 Aligned_cols=249 Identities=16% Similarity=0.174 Sum_probs=212.4
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCC
Q 001503 189 GLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPP 268 (1065)
Q Consensus 189 ~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~p 268 (1065)
.+...|+|||++||+.||+|++++..+|. ++.+.++ ||+|+.+|++.++..+...+.++..+ .+..|+.
T Consensus 130 ~~~~~~~IKsp~EIe~mR~A~~ia~~al~-~a~~~ir------pGvTe~EI~~~v~~~~~~~Ga~ps~l----~y~~fp~ 198 (396)
T PLN03158 130 DLQHSVEIKTPEQIQRMRETCRIAREVLD-AAARAIK------PGVTTDEIDRVVHEATIAAGGYPSPL----NYHFFPK 198 (396)
T ss_pred ccccceeeCCHHHHHHHHHHHHHHHHHHH-HHHHHcc------CCCCHHHHHHHHHHHHHHcCCccccc----cccCCCc
Confidence 45678999999999999999999999999 9999998 69999999999999987654322111 1356888
Q ss_pred EEEeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 001503 269 IFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNK 347 (1065)
Q Consensus 269 IV~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~ 347 (1065)
++++|.|..+ +|+.|++++|+.| |+|++|+|+.|+||++|++|||+|| ++++|+++|++++++++++++++|||++
T Consensus 199 svcts~N~~i-~Hgip~~r~L~~G--DiV~iDvg~~~~GY~aD~tRT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~ 275 (396)
T PLN03158 199 SCCTSVNEVI-CHGIPDARKLEDG--DIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVR 275 (396)
T ss_pred eeeecccccc-cCCCCCCccCCCC--CEEEEEEeEEECCEEEeEEeEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8999999876 8999999999999 9999999999999999999999998 8999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCcccc-CCC--CccccCCcEEEEeeccccccC-------CCC
Q 001503 348 VSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLN-AKN--DRVVKAKMIFNVSIGFQNLQN-------QTN 417 (1065)
Q Consensus 348 ~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~-~~~--~~vLe~GMVfsIEpg~~~l~~-------~~~ 417 (1065)
++||++++.+++.+.| |.. +.+.+|||||+.+||.|.+.. .++ ..+|++||||+|||+++ +.. ..|
T Consensus 276 ~~dI~~~i~~~~~~~G--~~~-v~~~~GHGIG~~~He~P~i~~~~~~~~~~~l~~GMVfTIEP~i~-~g~~~~~~~~d~w 351 (396)
T PLN03158 276 YREVGEVINRHATMSG--LSV-VKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMIN-AGVWRDRMWPDGW 351 (396)
T ss_pred HHHHHHHHHHHHHHcC--CCc-cCCccCCccccccCCCCCCCcccCCCCCCEecCCcEEEECCeec-cCcccceecCCCc
Confidence 9999999999999999 653 567799999999999995332 223 47999999999999998 321 123
Q ss_pred C--CCCCeeEEEEEEEEEEeCCCceecCccCcccHhhhcc
Q 001503 418 K--PKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAY 455 (1065)
Q Consensus 418 ~--~~~~~~gv~ieDTVlVTe~G~evLT~~~pk~l~~I~~ 455 (1065)
+ +.++.+++++||||+||++|+|+||...|+....+.+
T Consensus 352 t~~t~dG~~~aq~E~tvlVTe~G~EiLT~~~~~~~~~~~~ 391 (396)
T PLN03158 352 TAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPDVFPW 391 (396)
T ss_pred eEEecCCceeeEeeeEEEEeCCcceECCCCCCCCcccccc
Confidence 3 3457788999999999999999999867777654433
No 22
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=1.9e-38 Score=345.89 Aligned_cols=222 Identities=23% Similarity=0.291 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCC
Q 001503 202 IMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPS 281 (1065)
Q Consensus 202 I~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h 281 (1065)
|++||+|+++++.+|. ++.+.++ ||+||.+|++.++..+.+. |+. .+|+++|++|.|..+ +|
T Consensus 1 i~~lr~A~~i~~~~~~-~~~~~i~------pG~tE~ei~~~~~~~~~~~-------G~~---~~~~~~v~~g~~~~~-~H 62 (243)
T cd01087 1 IELMRKACDISAEAHR-AAMKASR------PGMSEYELEAEFEYEFRSR-------GAR---LAYSYIVAAGSNAAI-LH 62 (243)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHCc------CCCcHHHHHHHHHHHHHHc-------CCC---cCCCCeEEECCCccc-cC
Confidence 5799999999999999 8888888 6999999999999988753 332 578899999999876 89
Q ss_pred ccCCcccccccCcceEEEEccceeCCeEeeeEEEEEE-c-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 001503 282 AASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLI-D-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVV 359 (1065)
Q Consensus 282 ~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~V-g-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l 359 (1065)
+.|++++|+.| |+|++|+|++|+|||+|++|||++ + |+++|+++|++++++++++++++|||+++++|++++.+++
T Consensus 63 ~~~~~~~l~~G--d~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~ 140 (243)
T cd01087 63 YVHNDQPLKDG--DLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVL 140 (243)
T ss_pred CCcCCCcCCCC--CEEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999 4 7999999999999999999999999999999999999999
Q ss_pred HHhCCc----------------cccCCCCCcceeeccccccCCcc-ccCCCCccccCCcEEEEeeccccccCCC-C-CCC
Q 001503 360 EREAPE----------------LVPNLTKSAGTGIGLEFRESGLN-LNAKNDRVVKAKMIFNVSIGFQNLQNQT-N-KPK 420 (1065)
Q Consensus 360 ~~~Gpe----------------l~~~~~h~~GHgIGle~~E~p~~-i~~~~~~vLe~GMVfsIEpg~~~l~~~~-~-~~~ 420 (1065)
++.+.. +..+++|++|||||+++||.|.+ ..+++..+|++||||+|||++| ++... . .+.
T Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e~p~~~~~~~~~~~l~~GMv~~iEp~iy-~~~~~~~~~~~ 219 (243)
T cd01087 141 AEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDVGGYLRYLRRARPLEPGMVITIEPGIY-FIPDLLDVPEY 219 (243)
T ss_pred HHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCcccccCccccccCCCCCCCCCCCEEEECCEEE-eCCcccccccc
Confidence 876421 23688999999999999999953 2678899999999999999999 44211 0 012
Q ss_pred CCeeEEEEEEEEEEeCCCceecCc
Q 001503 421 NQMFSLLLADTVIVGENNPEVVTC 444 (1065)
Q Consensus 421 ~~~~gv~ieDTVlVTe~G~evLT~ 444 (1065)
.+.+|+++||||+||++|+++||.
T Consensus 220 ~~~~g~~ied~v~Vt~~G~e~Lt~ 243 (243)
T cd01087 220 FRGGGIRIEDDVLVTEDGPENLTR 243 (243)
T ss_pred cceeEEEeeeEEEEcCCcceeCcC
Confidence 357899999999999999999984
No 23
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=1.6e-36 Score=321.82 Aligned_cols=207 Identities=24% Similarity=0.395 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCC
Q 001503 202 IMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPS 281 (1065)
Q Consensus 202 I~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h 281 (1065)
|++||+||++++.++. ++...++ ||+||.+|++.++..+.+. |. ..++|+++|+||.+... +|
T Consensus 1 i~~~r~a~~i~~~~~~-~~~~~~~------~G~te~ei~~~~~~~~~~~-------g~--~~~~~~~~v~~g~~~~~-~h 63 (208)
T cd01092 1 IELLRKAARIADKAFE-ELLEFIK------PGMTEREVAAELEYFMRKL-------GA--EGPSFDTIVASGPNSAL-PH 63 (208)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHCc------CCCCHHHHHHHHHHHHHHc-------CC--CCCCCCcEEEECccccc-cC
Confidence 5799999999999999 8888887 6999999999999988753 33 25789999999999765 89
Q ss_pred ccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 001503 282 AASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVE 360 (1065)
Q Consensus 282 ~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~ 360 (1065)
..|+++.|+.| |+|++|+|++|+|||+|++||+++| |+++|+++|++++++++++++++|||++++|||+++.++++
T Consensus 64 ~~~~~~~l~~g--d~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~ 141 (208)
T cd01092 64 GVPSDRKIEEG--DLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIE 141 (208)
T ss_pred CCCCCcCcCCC--CEEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeCCCc
Q 001503 361 REAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNP 439 (1065)
Q Consensus 361 ~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~ 439 (1065)
+.| +.++|+|++|||||+.+||.|+ |.++++.+|++||||+|||+++ + ++.+|+++||||+||++|+
T Consensus 142 ~~g--~~~~~~~~~Gh~iG~~~~e~p~-i~~~~~~~l~~gmv~~iep~~~-~--------~~~~g~~~ed~v~vt~~g~ 208 (208)
T cd01092 142 EAG--YGEYFIHRTGHGVGLEVHEAPY-ISPGSDDVLEEGMVFTIEPGIY-I--------PGKGGVRIEDDVLVTEDGC 208 (208)
T ss_pred HcC--ccccCCCCCccccCcccCcCCC-cCCCCCCCcCCCCEEEECCeEE-e--------cCCCEEEeeeEEEECCCCC
Confidence 999 7788999999999999999995 8889999999999999999998 4 3568999999999999985
No 24
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=328.28 Aligned_cols=397 Identities=19% Similarity=0.213 Sum_probs=282.0
Q ss_pred cCCCHHHHHHHHHHHHHHhhccCCCCCCCCcE--EEEeCCCCCCccccc-------ccccceEEEcCCcCCcEEEEE--E
Q 001503 21 YSINLENFSTRLKALYSHWNKHKSDYWGSADV--LAIATPPASEDLRYL-------KSSALNIWLLGYEFPETVMVF--M 89 (1065)
Q Consensus 21 ~~id~~~f~~Rl~rL~~~mk~~~~~~~~~lDa--lli~~g~~~~~~~Y~-------ks~al~~wLtGye~p~tllli--t 89 (1065)
..+|.+.|.....|+..+++.........+|+ +++.-|. .+.|+|- +|.+.++||+|..-|.++.+| .
T Consensus 10 ~~vP~~lf~~nr~rl~~~lr~k~~~~nr~~~~~s~vllqgG-eE~nrYctD~~~lFrQesYF~~lfGV~ep~~yg~idv~ 88 (492)
T KOG2737|consen 10 WLVPMELFAGNRKRLLEALRKKLLSSNRSLDGGSFVLLQGG-EEKNRYCTDTTELFRQESYFAYLFGVREPGFYGAIDVG 88 (492)
T ss_pred ceecHHHhhcchHHHHHHHHhhcccccccccCceEEEEecc-hhhcccccchHHHHhhhhHHHHhhcCCCccceEEEEec
Confidence 44888899998899888888743222334554 4444444 3345665 678889999999999876666 3
Q ss_pred CCcEEEEEeCCccchHHHHHhh------ccccCCcEEEEEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCC
Q 001503 90 KKQIQFLCSQKKASLLGMVKRS------AKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARET 163 (1065)
Q Consensus 90 ~~~~~ll~s~kK~~~le~~~~~------~~~~~~vei~~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~ 163 (1065)
.++.+||+..--..| ..|-+. ......++-+.| .+++...++. ...+-+-.....+
T Consensus 89 tgKstLFvPrlp~~y-a~W~G~i~~l~~fke~y~VDev~y-----------vde~~~~~~~------~~~k~l~~l~g~n 150 (492)
T KOG2737|consen 89 TGKSTLFVPRLPDSY-ATWMGEILSLQHFKEKYAVDEVFY-----------VDEIIQVLKG------SKPKLLYLLRGLN 150 (492)
T ss_pred CCceEEEecCCChhh-ceeccccCCHHHHHHHhhhhheee-----------hHhHHHHhhc------cCccceeeeeccc
Confidence 457788874311111 011110 001122333333 3456666663 2333333322111
Q ss_pred -CcHHHHHHH----HHHhhcCCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 001503 164 -PEGRLLETW----ADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSL 238 (1065)
Q Consensus 164 -~~g~~~~~l----~~~l~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~e 238 (1065)
-++.+.+.- .+.++ ....=.-+.++++|.|||+.||+.||.|++|++.+.. +++..++ ||+.|.+
T Consensus 151 TDsg~v~~e~~f~g~~kf~---~D~~~lyp~m~E~RviKs~~EieviRya~kISseaH~-~vM~~~~------pg~~Eyq 220 (492)
T KOG2737|consen 151 TDSGNVLKEASFAGISKFE---TDLTLLYPILAECRVIKSSLEIEVIRYANKISSEAHI-EVMRAVR------PGMKEYQ 220 (492)
T ss_pred cCcccccCcccccchhhcc---cCchhhhHHHhhheeeCCHHHHHHHHHHHhhccHHHH-HHHHhCC------chHhHHh
Confidence 111111100 01111 1111124577899999999999999999999999999 9999999 6999999
Q ss_pred HHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCCc----cCCcccccccCcceEEEEccceeCCeEeeeEE
Q 001503 239 LMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSA----ASNDELLYYDSGSVIICAVGSRYNSYCSNIAR 314 (1065)
Q Consensus 239 La~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h~----~~~~r~L~~G~~dvI~vdlG~~y~GY~sditR 314 (1065)
+....+...... | +....+|.+|++||.|++. .|+ .|+++.++.| |.+++|+|+.|++|.||||+
T Consensus 221 ~eslF~hh~y~~-------G-GcRh~sYtcIc~sG~ns~v-LHYgha~apNd~~iqdg--d~cLfDmGaey~~yaSDITc 289 (492)
T KOG2737|consen 221 LESLFLHHSYSY-------G-GCRHLSYTCICASGDNSAV-LHYGHAGAPNDRTIQDG--DLCLFDMGAEYHFYASDITC 289 (492)
T ss_pred HHHHHHHhhhcc-------C-CccccccceeeecCCCcce-eeccccCCCCCcccCCC--CEEEEecCcceeeeecccce
Confidence 988877666532 2 3357889999999999986 566 7999999999 99999999999999999999
Q ss_pred EEEEcC--CHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHH----hCC---c--------cc-cCCCCCcce
Q 001503 315 SFLIDA--TPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVER----EAP---E--------LV-PNLTKSAGT 376 (1065)
Q Consensus 315 T~~Vgp--s~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~----~Gp---e--------l~-~~~~h~~GH 376 (1065)
+|..+. |++|+.+|++++.++.++++++|||+.+.|++.-+..++-+ .|. + +. .++||++||
T Consensus 290 sFP~nGKFTadqk~VYnaVLda~navm~a~KpGv~W~Dmh~La~kvlle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH 369 (492)
T KOG2737|consen 290 SFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGVWWVDMHKLAEKVLLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGH 369 (492)
T ss_pred eccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHhcCceeccHHHHHHhccCeeeccccccc
Confidence 999974 99999999999999999999999999999999987765433 331 0 11 367999999
Q ss_pred eeccccccCCccc-c-----------CCCCccccCCcEEEEeeccccc--------cCCCCC---------CCCCeeEEE
Q 001503 377 GIGLEFRESGLNL-N-----------AKNDRVVKAKMIFNVSIGFQNL--------QNQTNK---------PKNQMFSLL 427 (1065)
Q Consensus 377 gIGle~~E~p~~i-~-----------~~~~~vLe~GMVfsIEpg~~~l--------~~~~~~---------~~~~~~gv~ 427 (1065)
-|||++|+...+. + -+..+.|++|||+++|||+|++ .+|... .-.+.+|+|
T Consensus 370 ~lGlDvHDvGGyp~~~~rp~~P~l~~LR~aR~L~e~MviTvEPGcYFi~~Ll~ealadp~~~~f~n~e~~~rfr~~GGVR 449 (492)
T KOG2737|consen 370 FLGLDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGCYFIDFLLDEALADPARAEFLNREVLQRFRGFGGVR 449 (492)
T ss_pred cccccccccCCCCCCCCCCCcchhhhhhhhhhhhcCcEEEecCChhHHHHHHHHHhcChHhhhhhhHHHHHHhhccCceE
Confidence 9999999865433 1 1345789999999999999963 222210 123568999
Q ss_pred EEEEEEEeCCCceecCccCcccHhhhccccC
Q 001503 428 LADTVIVGENNPEVVTCKSSKAVKDVAYSFN 458 (1065)
Q Consensus 428 ieDTVlVTe~G~evLT~~~pk~l~~I~~~~~ 458 (1065)
|||.|+||.+|+|.||. .|+...+|+-.|.
T Consensus 450 IEdDv~vt~~G~enlt~-vprtveeIEa~ma 479 (492)
T KOG2737|consen 450 IEDDVVVTKSGIENLTC-VPRTVEEIEACMA 479 (492)
T ss_pred eeccEEEeccccccccC-CCCCHHHHHHHHh
Confidence 99999999999999997 9999999976665
No 25
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=6.3e-36 Score=324.84 Aligned_cols=225 Identities=22% Similarity=0.276 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCC
Q 001503 202 IMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPS 281 (1065)
Q Consensus 202 I~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h 281 (1065)
|++||+|+++++.++. ++.+.++ ||+||.+|++.+.+.+...+.... ......|++.+++|.+..+ +|
T Consensus 1 I~~lr~A~~i~~~~~~-~~~~~~~------pG~tE~ev~~~~~~~~~~~G~~~~----~~~~~~~~~~~~~~~~~~~-~h 68 (238)
T cd01086 1 IEGMREAGRIVAEVLD-ELAKAIK------PGVTTKELDQIAHEFIEEHGAYPA----PLGYYGFPKSICTSVNEVV-CH 68 (238)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHcc------CCCCHHHHHHHHHHHHHHcCCCcc----cccCCCCCcceecCCCCce-eC
Confidence 5789999999999999 8999998 699999999999998875431110 0012346677888888766 79
Q ss_pred ccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 001503 282 AASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVE 360 (1065)
Q Consensus 282 ~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~ 360 (1065)
+.|++++|++| |+|++|+|++|.|||+|++||+++| |+++|+++|+.++++++++++++|||+++++|+++++++++
T Consensus 69 ~~~~~~~l~~G--d~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~ 146 (238)
T cd01086 69 GIPDDRVLKDG--DIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAE 146 (238)
T ss_pred CCCCCcccCCC--CEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HhCCccccCCCCCcceeeccccccCCccc---cCCCCccccCCcEEEEeeccccccCC-----C--CC--CCCCeeEEEE
Q 001503 361 REAPELVPNLTKSAGTGIGLEFRESGLNL---NAKNDRVVKAKMIFNVSIGFQNLQNQ-----T--NK--PKNQMFSLLL 428 (1065)
Q Consensus 361 ~~Gpel~~~~~h~~GHgIGle~~E~p~~i---~~~~~~vLe~GMVfsIEpg~~~l~~~-----~--~~--~~~~~~gv~i 428 (1065)
+.| +.. +.+.+|||||+.+||.|.++ .++++.+|++||||++||++| ++.. . |. .+++.+|+++
T Consensus 147 ~~G--~~~-~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~iep~i~-~~~~~~~~~~~~~~~~~~~g~~g~~~ 222 (238)
T cd01086 147 KNG--YSV-VREFGGHGIGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMIN-LGTYEVVTLPDGWTVVTKDGSLSAQF 222 (238)
T ss_pred HcC--cce-ecCccccCCCCccccCCCcCCccCCCCCCEecCCCEEEEeeEEE-CCCCceEECCCCCEEEcCCCCEEEee
Confidence 999 643 56789999999999999533 277889999999999999998 3211 0 11 2356789999
Q ss_pred EEEEEEeCCCceecCc
Q 001503 429 ADTVIVGENNPEVVTC 444 (1065)
Q Consensus 429 eDTVlVTe~G~evLT~ 444 (1065)
||||+||++|+++||.
T Consensus 223 edtv~Vte~G~e~Lt~ 238 (238)
T cd01086 223 EHTVLITEDGPEILTL 238 (238)
T ss_pred eeEEEEcCCcceeCCC
Confidence 9999999999999984
No 26
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=100.00 E-value=8.6e-35 Score=308.98 Aligned_cols=204 Identities=31% Similarity=0.477 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH-HHccCccccccCCCCCCCCCCCEEEeCCCCCcCCC
Q 001503 203 MNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKA-ILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPS 281 (1065)
Q Consensus 203 ~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~-l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h 281 (1065)
++||+|+++++.++. ++.+.++ ||+||.+|++.+... +.+. | ..+++|+++++||.++.+ +|
T Consensus 1 e~~R~a~~i~~~~~~-~~~~~~~------~G~te~ei~~~~~~~~~~~~-------g--~~~~~~~~~~~~g~~~~~-~~ 63 (207)
T PF00557_consen 1 ECMRKAARIADAAME-AAMEALR------PGMTEYEIAAAIERAMLRRH-------G--GEEPAFPPIVGSGPNTDL-PH 63 (207)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHS------TTCBHHHHHHHHHHHHHHHT-------T--TTEESSESEEEECCCCGE-TT
T ss_pred CHHHHHHHHHHHHHH-HHHHHcc------CCCcHHHHHHHHHHHHHHHc-------C--CCcccCCceEecCCccee-cc
Confidence 589999999999999 8999988 699999999999988 4432 2 346889999999999987 78
Q ss_pred ccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHH
Q 001503 282 AASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVER 361 (1065)
Q Consensus 282 ~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~ 361 (1065)
..|+++.|+.| |+|++|+|++|.|||+|++||+++||+++|+++|+.++++++++++++|||+++++||+++.+++.+
T Consensus 64 ~~~~~~~l~~g--d~v~id~~~~~~gy~~d~~Rt~~~G~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~ 141 (207)
T PF00557_consen 64 YTPTDRRLQEG--DIVIIDFGPRYDGYHADIARTFVVGPTPEQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEE 141 (207)
T ss_dssp TBCCSSBESTT--EEEEEEEEEEETTEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHH
T ss_pred eeccceeeecC--CcceeeccceeeeeEeeeeeEEEEeecccccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHh
Confidence 89999999999 9999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred hCCccccCCCCCcceeeccccccC-Ccccc-CCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeC
Q 001503 362 EAPELVPNLTKSAGTGIGLEFRES-GLNLN-AKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGE 436 (1065)
Q Consensus 362 ~Gpel~~~~~h~~GHgIGle~~E~-p~~i~-~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe 436 (1065)
.| +...++|.+|||||+++|+. |. |. ++++.+|++||||+|+|++++. ++.+|+++||||+||+
T Consensus 142 ~g--~~~~~~~~~GH~iG~~~~~~~P~-i~~~~~~~~l~~gmv~~iep~~~~~--------~~~~g~~~ed~v~Vte 207 (207)
T PF00557_consen 142 YG--LEEPYPHGLGHGIGLEFHEPGPN-IARPGDDTVLEPGMVFAIEPGLYFI--------PGWGGVRFEDTVLVTE 207 (207)
T ss_dssp TT--EGEEBTSSSEEEESSSSSEEEEE-ESSTTTSSB--TTBEEEEEEEEEEE--------TTSEEEEEBEEEEEES
T ss_pred hc--ccceeeeccccccccccccccee-eecccccceecCCCceeEeeeEEcc--------CCCcEEEEEEEEEECc
Confidence 99 76778899999999999997 85 55 7899999999999999999854 3568999999999996
No 27
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00 E-value=2.2e-34 Score=310.26 Aligned_cols=206 Identities=19% Similarity=0.258 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCC--CCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCC
Q 001503 204 NVKKAGYLTYNVMNKIVVPKLENVIDEEKK--VTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPS 281 (1065)
Q Consensus 204 ~~R~Aa~ia~~~~~~~~~~~i~~iid~e~G--vTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h 281 (1065)
.||.+..++ .++. .+.+.++ || +||.||++.+++.+... + +....+|+++|++|.|.++ +|
T Consensus 6 ~~~~~~~~~-~~~~-~~~~~i~------~G~~~tE~eiaa~~~~~~~~~-------g-~~~~~~f~~~v~~g~n~~~-~H 68 (224)
T cd01085 6 HIRDGVALV-EFLA-WLEQEVP------KGETITELSAADKLEEFRRQQ-------K-GYVGLSFDTISGFGPNGAI-VH 68 (224)
T ss_pred HHHHHHHHH-HHHH-HHHHHhc------cCCCEeHHHHHHHHHHHHHHc-------C-CCcCCCcceEEEecCccCc-CC
Confidence 456666554 7777 6777777 69 99999999999877632 1 1224678999999999887 89
Q ss_pred ccCC---cccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhC-CCCCChhHHHHHHH
Q 001503 282 AASN---DELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGAL-KPGNKVSAAYQAAL 356 (1065)
Q Consensus 282 ~~~~---~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~l-rPGv~~~dV~~aa~ 356 (1065)
+.|+ ++.|+.| |+|++|+|+.|+|||+|++|||++| |+++|+++|+.+++++.++++.+ +||+++.+|+++++
T Consensus 69 ~~p~~~~~r~l~~G--D~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~ 146 (224)
T cd01085 69 YSPTEESNRKISPD--GLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALAR 146 (224)
T ss_pred CCcCcccCcccCCC--CEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9998 8999999 9999999999999999999999998 89999999999999999999888 59999999999999
Q ss_pred HHHHHhCCccccCCCCCcceeec--cccccCCccc-cCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEE
Q 001503 357 SVVEREAPELVPNLTKSAGTGIG--LEFRESGLNL-NAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVI 433 (1065)
Q Consensus 357 ~~l~~~Gpel~~~~~h~~GHgIG--le~~E~p~~i-~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVl 433 (1065)
+++.+.| + .|.|++||||| +.+||.|.++ .+++..+|++||||+|||++| + ++.+|+++||||+
T Consensus 147 ~~~~~~g--~--~~~h~~GHgIG~~l~~hE~P~i~~~~~~~~~L~~GmvftiEP~iy-~--------~g~~gvried~v~ 213 (224)
T cd01085 147 QPLWKAG--L--DYGHGTGHGVGSFLNVHEGPQSISPAPNNVPLKAGMILSNEPGYY-K--------EGKYGIRIENLVL 213 (224)
T ss_pred HHHHHhC--C--CCCCCCCCCCCCCCcCCCCCCcCCcCCCCCCcCCCCEEEECCEeE-e--------CCCeEEEeeEEEE
Confidence 9999999 4 37899999999 6889999654 678889999999999999999 4 4679999999999
Q ss_pred EeCCCcee
Q 001503 434 VGENNPEV 441 (1065)
Q Consensus 434 VTe~G~ev 441 (1065)
||++|+.-
T Consensus 214 Vt~~G~~~ 221 (224)
T cd01085 214 VVEAETTE 221 (224)
T ss_pred EeeCCcCC
Confidence 99999854
No 28
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=100.00 E-value=5.8e-34 Score=320.42 Aligned_cols=206 Identities=18% Similarity=0.261 Sum_probs=177.1
Q ss_pred ceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceeccee--EEEEeeeeeEEecCCC
Q 001503 697 GTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDV--QFYVEVMDVVQTLGGG 774 (1065)
Q Consensus 697 G~le~h~ng~r~~~~~~~~~~di~y~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~~v--QF~~e~~~~~~~~~~~ 774 (1065)
=.+.+|.+.||+.+ +++++.|.|+.|+++|++|..++.|+.+++.|+|||+||||+|+++ ||-++ .++..+|+
T Consensus 216 YdI~iy~t~lrL~G--kTyDyKI~y~SI~rLflLPk~d~rh~~fVisldPPIRQGQTrY~~LV~qF~kD-ee~e~eLs-- 290 (615)
T KOG0526|consen 216 YDIKIYPTFLRLHG--KTYDYKIPYKSINRLFLLPKKDQRHVYFVISLDPPIRQGQTRYPFLVLQFGKD-EEVELELS-- 290 (615)
T ss_pred ceeEEehhhhhhcc--cccceecchhheeeeEeccCCCCceEEEEEecCCccccCccccceEEEEeccc-cceeEeec--
Confidence 37999999999998 8999999999999999999999999999999999999999999966 99844 34444444
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cc-CCCccCCCcceecccCCCcceeccccCceeeeecCc
Q 001503 775 KRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVND-----LW-GQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTS 848 (1065)
Q Consensus 775 r~~~~d~de~~~eq~e~~~~~~ln~~f~~f~~~v~~-----~~-~~~~~~~~~~~~~~p~~~l~f~g~~~~~~~~~~pt~ 848 (1065)
|.+|+.+.+...+|.++|.+.++.|=. |. ..++.|+ +|.....-.+..|...++.++|||+.
T Consensus 291 ---------lsdE~l~~k~~~kL~k~ysg~i~Ev~s~V~k~L~~rKit~Pg---~F~s~~g~~av~CS~KAneG~LYPLe 358 (615)
T KOG0526|consen 291 ---------LSDEELEEKYKGKLKKEYSGPIYEVFSIVMKALCGRKITVPG---EFLSHSGTAAVKCSFKANEGLLYPLE 358 (615)
T ss_pred ---------ccHHHHhhhhcchhhhhcCccHHHHHHHHHHHHhCceeeccc---cccccCCCceeeeeecccCceEeecc
Confidence 445666667777777666555544422 10 2255567 89999999999999999999999999
Q ss_pred ccceeeccCCcEEEEeCceeEEEEEeec---CCCcceeEEEEEecCCCCeEEEecccCCChHHHHHHhhhcCceeee
Q 001503 849 SCLVELIETPFLVVTLGEIEIVNLERVG---LGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYE 922 (1065)
Q Consensus 849 ~clv~l~e~P~~vi~l~eie~v~feRv~---~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~e 922 (1065)
+|+++|+ +|+++|.++||..|+|+|++ ...|+|||.|.+| +..+++|++|.++++..|-+||++++|++.+
T Consensus 359 kgFlFl~-KP~l~I~f~EIS~V~fsR~~~s~t~trtFD~ei~lk--~g~~~tFs~i~keE~~~L~~fl~sK~lki~N 432 (615)
T KOG0526|consen 359 KGFLFLP-KPPLYIRFEEISSVNFSRSGLSGTSTRTFDFEITLK--SGTSYTFSNISKEEYGKLFDFLNSKGLKIRN 432 (615)
T ss_pred cceEeec-CCceEeeccceeeEEEEeccCCccceeeEEEEEEEc--CCCeeeecccCHHHHHHHHHHHhhcCceeec
Confidence 9999999 99999999999999999994 4899999999999 7899999999999999999999999999764
No 29
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00 E-value=1.3e-32 Score=289.22 Aligned_cols=206 Identities=30% Similarity=0.455 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCC
Q 001503 202 IMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPS 281 (1065)
Q Consensus 202 I~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h 281 (1065)
|+.||+|+++++.++. .+...++ ||+||.+|++.+...+... |. .+.+++++++|.+... +|
T Consensus 1 i~~~r~a~~i~~~~~~-~~~~~~~------~G~te~ei~~~~~~~~~~~-------g~---~~~~~~~v~~g~~~~~-~h 62 (207)
T cd01066 1 IARLRKAAEIAEAAMA-AAAEAIR------PGVTEAEVAAAIEQALRAA-------GG---YPAGPTIVGSGARTAL-PH 62 (207)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHCc------CCCCHHHHHHHHHHHHHHc-------CC---CCCCCcEEEECccccC-cC
Confidence 4689999999999999 8999888 6999999999999988753 22 4677899999998655 78
Q ss_pred ccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 001503 282 AASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVE 360 (1065)
Q Consensus 282 ~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~ 360 (1065)
+.++++.|+.| |+|++|+|++|+|||+|++||+++| |+++|+++|+.+.++++++++.+|||+++.+|++++.++++
T Consensus 63 ~~~~~~~i~~g--d~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~ 140 (207)
T cd01066 63 YRPDDRRLQEG--DLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLE 140 (207)
T ss_pred CCCCCCCcCCC--CEEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 88999999999 9999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeCCCc
Q 001503 361 REAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNP 439 (1065)
Q Consensus 361 ~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~ 439 (1065)
+.| +..++.|.+|||||+.+||.|. +++++..+|++||||+|||+++. ++.+|+++||||+||++|+
T Consensus 141 ~~g--~~~~~~~~~Gh~iG~~~~e~~~-~~~~~~~~l~~gmv~~iep~~~~---------~~~~g~~~ed~v~vt~~g~ 207 (207)
T cd01066 141 EHG--LGPNFGHRTGHGIGLEIHEPPV-LKAGDDTVLEPGMVFAVEPGLYL---------PGGGGVRIEDTVLVTEDGP 207 (207)
T ss_pred HcC--ccccCCCCCccccCcccCCCCC-cCCCCCCCcCCCCEEEECCEEEE---------CCCcEEEeeeEEEEeCCCC
Confidence 999 6567889999999999999995 78889999999999999999983 3468999999999999985
No 30
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=99.97 E-value=9.9e-31 Score=282.82 Aligned_cols=216 Identities=19% Similarity=0.186 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCcc-ccccCCCCCCCCCCCEEEeCCCCCcCC
Q 001503 202 IMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKA-GVKLRAENVDICYPPIFQSGGAFDLRP 280 (1065)
Q Consensus 202 I~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~-~~~~~~~~~~~~y~pIV~SG~~~~l~~ 280 (1065)
++.||+|++|++.+|. ++.+.++ ||+|+.+|+..++..+...... ......+..+++|+++|++ |... +
T Consensus 1 ~~~~r~A~~I~~~~~~-~~~~~i~------pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~v~~--n~~~-~ 70 (228)
T cd01089 1 VTKYKTAGQIANKVLK-QVISLCV------PGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCISV--NNCV-C 70 (228)
T ss_pred CHHHHHHHHHHHHHHH-HHHHhcc------CCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeEecc--Ccee-e
Confidence 3689999999999999 8998888 6999999998888777652111 1110012235778887775 4434 5
Q ss_pred Ccc----CCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCH-----HHHHHHHHHHHHHHHHHHhCCCCCChhH
Q 001503 281 SAA----SNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATP-----LQSKVYEVLLKAHEAAIGALKPGNKVSA 350 (1065)
Q Consensus 281 h~~----~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~-----eq~~~y~~llea~~a~i~~lrPGv~~~d 350 (1065)
|+. +++++|+.| |+|++|+|+.|+||++|++|||++| |++ +++++|++++++++++++++|||++++|
T Consensus 71 H~~p~~~~~~~~l~~G--d~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~~d 148 (228)
T cd01089 71 HFSPLKSDATYTLKDG--DVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSD 148 (228)
T ss_pred cCCCCCCCCCcccCCC--CEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 666 478899999 9999999999999999999999998 553 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC-ccccCCCCCcceeeccccccCCccccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEE
Q 001503 351 AYQAALSVVEREAP-ELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLA 429 (1065)
Q Consensus 351 V~~aa~~~l~~~Gp-el~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ie 429 (1065)
|++++++++++.|. -+..++.|++||++| +++.+- +-..+|++||||+++|+++ . ++.++++++
T Consensus 149 v~~a~~~~~~~~G~~~~~~~~~h~~g~~~~--~~~~~~----~~~~~l~~gmvf~~ep~~~-~--------~g~~~~~~~ 213 (228)
T cd01089 149 ITEAIQKVIVDYGCTPVEGVLSHQLKRVVS--SGEGKA----KLVECVKHGLLFPYPVLYE-K--------EGEVVAQFK 213 (228)
T ss_pred HHHHHHHHHHHcCCEEecCccccCcCceEe--cCCCCc----cchhhccCCcccccceeEc-c--------CCCeEEEEE
Confidence 99999999999992 134567788899554 455441 1278899999999999998 4 577999999
Q ss_pred EEEEEeCCCceecCc
Q 001503 430 DTVIVGENNPEVVTC 444 (1065)
Q Consensus 430 DTVlVTe~G~evLT~ 444 (1065)
|||+||++|+++||.
T Consensus 214 ~Tv~vt~~G~e~lt~ 228 (228)
T cd01089 214 LTVLLTPNGVTVLTG 228 (228)
T ss_pred EEEEEcCCCCeeCCC
Confidence 999999999999983
No 31
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-29 Score=272.49 Aligned_cols=233 Identities=22% Similarity=0.258 Sum_probs=193.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCC
Q 001503 195 AVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGG 274 (1065)
Q Consensus 195 aVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~ 274 (1065)
.+|+++||+.||+|++|+..++. ++.+.++ ||+|..||...+++.+.+.+.++..++.. .++|+ ++.| -
T Consensus 4 ~ikt~~eiek~r~Ag~i~a~~l~-~~~~~v~------pGvtt~Eld~~~~~~i~~~ga~pa~~gy~--g~~~~-~ciS-v 72 (255)
T COG0024 4 SIKTPEEIEKMREAGKIAAKALK-EVASLVK------PGVTTLELDEIAEEFIREKGAYPAFLGYK--GFPFP-TCIS-V 72 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH-HHHHHcC------CCCCHHHHHHHHHHHHHHcCceehhccCc--CCCcc-eEee-h
Confidence 38999999999999999999998 8888777 79999999999999999766665555543 24443 3444 3
Q ss_pred CCCcCCCccCC-cccccccCcceEEEEccceeCCeEeeeEEEEEEc-CC-HHHHHHHHHHHHHHHHHHHhCCCCCChhHH
Q 001503 275 AFDLRPSAASN-DELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-AT-PLQSKVYEVLLKAHEAAIGALKPGNKVSAA 351 (1065)
Q Consensus 275 ~~~l~~h~~~~-~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps-~eq~~~y~~llea~~a~i~~lrPGv~~~dV 351 (1065)
|-.. .|+.|+ +++|+.| |+|.+|+|+.++||++|.++||.|| .+ ...+++.++..+++.++++.+|||+++++|
T Consensus 73 Ne~v-~HgiP~d~~vlk~G--Div~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~~I 149 (255)
T COG0024 73 NEVV-AHGIPGDKKVLKEG--DIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDI 149 (255)
T ss_pred hhee-eecCCCCCcccCCC--CEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 4333 688887 5789999 9999999999999999999999999 35 477779999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCC---CccccCCcEEEEeeccccccC-------CCCC--C
Q 001503 352 YQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKN---DRVVKAKMIFNVSIGFQNLQN-------QTNK--P 419 (1065)
Q Consensus 352 ~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~---~~vLe~GMVfsIEpg~~~l~~-------~~~~--~ 419 (1065)
-+++.+++++.| |.. ....+|||||..+|+.|.+++... ..+|++||||+|||.+..-.. ..|. +
T Consensus 150 g~aIq~~~~~~G--~~v-Vr~~~GHgig~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPmi~~G~~~~~~~~~d~Wt~~t 226 (255)
T COG0024 150 GRAIQEYAESRG--FSV-VRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVT 226 (255)
T ss_pred HHHHHHHHHHcC--CEE-eecccCCccCcccCCCCeeccccCCCCCcccCCCCEEEEeeEEEcCCCceEecCCCCeEEEe
Confidence 999999999999 532 223489999999999998776332 479999999999999873111 1244 5
Q ss_pred CCCeeEEEEEEEEEEeCCCceecCc
Q 001503 420 KNQMFSLLLADTVIVGENNPEVVTC 444 (1065)
Q Consensus 420 ~~~~~gv~ieDTVlVTe~G~evLT~ 444 (1065)
.++....++|+||+||++|+++||.
T Consensus 227 ~d~~~~aq~EHTv~Vt~~g~eilT~ 251 (255)
T COG0024 227 KDGSLSAQFEHTVIVTEDGCEILTL 251 (255)
T ss_pred CCCCEEeEEEEEEEEeCCCcEEeeC
Confidence 7788999999999999999999996
No 32
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-29 Score=273.36 Aligned_cols=205 Identities=19% Similarity=0.296 Sum_probs=178.2
Q ss_pred ceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceeccee--EEEEeeeeeEEecCCC
Q 001503 697 GTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDV--QFYVEVMDVVQTLGGG 774 (1065)
Q Consensus 697 G~le~h~ng~r~~~~~~~~~~di~y~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~~v--QF~~e~~~~~~~~~~~ 774 (1065)
=.+.++.|.+|+++ +++.+.|.|+.||.+|.+|+.++.|+++++++.|||+||||+||++ ||.++ .++.++|+
T Consensus 225 ydid~y~~~lRLrG--ktYdyKi~y~sI~~l~~LpK~dd~h~~~Vig~ePPlRQGQTrYpflV~qF~kd-ed~Ev~Ln-- 299 (508)
T COG5165 225 YDIDFYRDYLRLRG--KTYDYKIYYKSIKMLYVLPKIDDGHRYVVIGAEPPLRQGQTRYPFLVVQFQKD-EDVEVELN-- 299 (508)
T ss_pred ccchhhhhhhhhcc--cccceeeeeeeeeEEEEeccCCCccEEEEEecCCcccCCCccCCeEEEEEecc-cceeeeec--
Confidence 36899999999998 8999999999999999999999999999999999999999999955 99865 55556666
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccC-CCccCCCcceecccCCCcceeccccCceeeeecCc
Q 001503 775 KRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVND-----LWG-QPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTS 848 (1065)
Q Consensus 775 r~~~~d~de~~~eq~e~~~~~~ln~~f~~f~~~v~~-----~~~-~~~~~~~~~~~~~p~~~l~f~g~~~~~~~~~~pt~ 848 (1065)
+++|-.|..++.||+.+|.+.+..|-. ++. .+..|+ +|.+.+...+..|..+...+.|||+-
T Consensus 300 ---------vede~~~e~y~dklK~~Yd~~~~ev~s~v~~gLt~rkvv~p~---ef~S~~g~~av~Cs~KAnEGqLYpLD 367 (508)
T COG5165 300 ---------VEDEDYEENYKDKLKGEYDGLLSEVFSEVMEGLTVRKVVRPS---EFESRDGMRAVRCSMKANEGQLYPLD 367 (508)
T ss_pred ---------cchhhhhhhHHHhhhhhccchHHHHHHHHHHhhcceeeecch---hhcccCCceeeeeeeeccCceEeecc
Confidence 555556677888888777666555422 211 122344 89999999999999999999999999
Q ss_pred ccceeeccCCcEEEEeCceeEEEEEeecC---CCcceeEEEEEecCCCCeEEEecccCCChHHHHHHhhhcCceee
Q 001503 849 SCLVELIETPFLVVTLGEIEIVNLERVGL---GQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYY 921 (1065)
Q Consensus 849 ~clv~l~e~P~~vi~l~eie~v~feRv~~---~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~ 921 (1065)
+|+++|. +|.+.+.++||..|+|+|++. +.|||||+|+++ +...++|++|.+.++..|.+||.|++|+..
T Consensus 368 ~~flFlp-Kptl~l~~sdis~V~~SRig~ss~~arTFDlt~~lr--s~~sytF~nisk~Eq~aLeqfl~sK~ik~~ 440 (508)
T COG5165 368 DCFLFLP-KPTLRLDLSDISLVEFSRIGLSSMQARTFDLTLFLR--SPGSYTFNNISKDEQGALEQFLHSKGIKAR 440 (508)
T ss_pred ceEEecc-CceEEeecccceEEEEeecccchhhhceeeEEEEEe--cCCceeecCcCHHHHHHHHHHHhccCceec
Confidence 9999999 999999999999999999987 889999999999 668999999999999999999999999965
No 33
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=261.14 Aligned_cols=241 Identities=18% Similarity=0.182 Sum_probs=207.5
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEE
Q 001503 191 SELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIF 270 (1065)
Q Consensus 191 ~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV 270 (1065)
+....|.++++|+.||+||+++..++. ++...++ ||+|..||...+.+++.+.+.+++.++ +..||-.+
T Consensus 111 s~~i~i~~~e~ie~mR~ac~LarevLd-~Aa~~v~------PgvTTdEiD~~VH~a~Ierg~YPSPLn----Yy~FPKS~ 179 (369)
T KOG2738|consen 111 SNEIKILDPEGIEGMRKACRLAREVLD-YAATLVR------PGVTTDEIDRAVHNAIIERGAYPSPLN----YYGFPKSV 179 (369)
T ss_pred ccceeccCHHHHHHHHHHHHHHHHHHH-HHhhhcC------CCccHHHHHHHHHHHHHhcCCcCCCcc----cCCCchhh
Confidence 345678999999999999999999999 8988888 799999999999999988777765555 35787778
Q ss_pred EeCCCCCcCCCccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 001503 271 QSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVYEVLLKAHEAAIGALKPGNKVS 349 (1065)
Q Consensus 271 ~SG~~~~l~~h~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y~~llea~~a~i~~lrPGv~~~ 349 (1065)
++..|-.+ .|+.|+.|+|+.| |+|.+|+.+-++||++|+.+||+|| .+++.+++.+...++++.+|+.+|||+++.
T Consensus 180 CTSVNEvi-CHGIPD~RpLedG--DIvNiDVtvY~~GyHGDlneTffvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~fr 256 (369)
T KOG2738|consen 180 CTSVNEVI-CHGIPDSRPLEDG--DIVNIDVTVYLNGYHGDLNETFFVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSFR 256 (369)
T ss_pred hcchhhee-ecCCCCcCcCCCC--CEEeEEEEEEeccccCccccceEeeccCHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 88888776 8999999999999 9999999999999999999999998 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCcccc-C--CCCccccCCcEEEEeecccc-----ccCCC-CC--
Q 001503 350 AAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLN-A--KNDRVVKAKMIFNVSIGFQN-----LQNQT-NK-- 418 (1065)
Q Consensus 350 dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~-~--~~~~vLe~GMVfsIEpg~~~-----l~~~~-~~-- 418 (1065)
+|-+.+.+...+.| |.- ....+|||||--||-.|.+.. + +...++++||+|+|||.+.. +..|+ |+
T Consensus 257 eiG~iI~kha~~~g--~sV-Vr~ycGHGig~~FH~~PnipHya~n~a~GvM~~G~tFTIEPmit~G~~~d~tWPD~WT~v 333 (369)
T KOG2738|consen 257 EIGNIIQKHATKNG--YSV-VRSYCGHGIGRVFHCAPNIPHYAKNKAPGVMKPGQTFTIEPMITIGTWEDITWPDDWTAV 333 (369)
T ss_pred HHHHHHHHHhhhcC--cee-ehhhhccccccccccCCCchhhcccCCcceeecCceEEeeeeecccccccccCCCCceEE
Confidence 99999999999999 531 234599999999999996433 2 34578999999999999862 11121 44
Q ss_pred CCCCeeEEEEEEEEEEeCCCceecCccCcc
Q 001503 419 PKNQMFSLLLADTVIVGENNPEVVTCKSSK 448 (1065)
Q Consensus 419 ~~~~~~gv~ieDTVlVTe~G~evLT~~~pk 448 (1065)
..++..+.++|+|+|||+.|+|+||...|.
T Consensus 334 TaDG~~sAQFEhTlLVT~tG~EILT~r~~~ 363 (369)
T KOG2738|consen 334 TADGKRSAQFEHTLLVTETGCEILTKRLPN 363 (369)
T ss_pred ecCCceecceeeEEEEecccceehhcccCC
Confidence 577889999999999999999999974443
No 34
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.95 E-value=5.2e-28 Score=278.82 Aligned_cols=372 Identities=16% Similarity=0.194 Sum_probs=281.8
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCcccccccccceEEEcCCcCCc--------EEEEEECCcE
Q 001503 22 SINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPE--------TVMVFMKKQI 93 (1065)
Q Consensus 22 ~id~~~f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~ks~al~~wLtGye~p~--------tlllit~~~~ 93 (1065)
.+........+..|+..|+. .+++|+|++.-+ . +.||+.....+ ++++++.+.+
T Consensus 168 ~~~G~~~~~Kv~~LR~~l~~------~~~~a~Vvs~Ld-e-----------IaWllNLRGsDipynPv~~sY~~it~dei 229 (606)
T KOG2413|consen 168 EFAGLSVDDKVDNLRKKLKE------KKCDAFVVTALD-E-----------IAWLLNLRGSDIPYNPVFYSYAIITMDEI 229 (606)
T ss_pred cccCcchhHHHHHHHHHHhh------cCCcEEehhhHH-H-----------HHHHHhcccCcCCCCchhhhhhhhhhhhh
Confidence 34556677888999999998 899999998876 3 68998877643 7889999999
Q ss_pred EEEEeCCccchHHHHHhhccccCCcEEEEEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHH
Q 001503 94 QFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWA 173 (1065)
Q Consensus 94 ~ll~s~kK~~~le~~~~~~~~~~~vei~~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~ 173 (1065)
.+++..+|.. .+..+.-. ...++|..|. ..+..+...... ....+|.+... .... ..
T Consensus 230 ~lfvd~~k~~-~~~~~~~~--~~~v~i~pY~--------~i~~~i~~~~~~------~~~~~i~ia~~--~~~~----i~ 286 (606)
T KOG2413|consen 230 FLFVDNSKLS-DESKKHLR--EDGVEIRPYD--------QIWSDIKNWASA------FADKKIWISPE--TNYG----IG 286 (606)
T ss_pred heeecCcccC-chhHHHHh--hCceeeeeHH--------HHHHHHHHHhcc------cCceeEeeccc--ceee----ec
Confidence 9999887654 23222110 2356777662 334444444431 23456666542 1110 11
Q ss_pred HHhhcCCCeEEeccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCcc
Q 001503 174 DRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKA 253 (1065)
Q Consensus 174 ~~l~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~ 253 (1065)
..++ .-..+.....++.++++|.+.|++.||.|----..|+. .+...++.-+..+..+||.+++..++..-...
T Consensus 287 ~~i~--~~~~~~~~Spi~~~kAiKN~~E~~gmr~shirD~~Alv-e~~~wle~~~~~g~~itE~~~A~kle~fR~~~--- 360 (606)
T KOG2413|consen 287 ELIG--EDHSMIDPSPISRAKAIKNDDELKGMRNSHIRDGAALV-EYFAWLEKELHKGYTITEYDAADKLEEFRSRQ--- 360 (606)
T ss_pred cccc--ccccccccCHHHHHHHhcChHHhhhhhhcchhhHHHHH-HHHHHHhhhhhcCcccchhhHHHHHHHHHHhh---
Confidence 1222 22335567778899999999999999988655555666 67777776555555699999999999887643
Q ss_pred ccccCCCCCCCCCCCEEEe-CCCCCcCCCccCCc---ccccccCcceEEEEccceeCCeEeeeEEEEEEc-CCHHHHHHH
Q 001503 254 GVKLRAENVDICYPPIFQS-GGAFDLRPSAASND---ELLYYDSGSVIICAVGSRYNSYCSNIARSFLID-ATPLQSKVY 328 (1065)
Q Consensus 254 ~~~~~~~~~~~~y~pIV~S-G~~~~l~~h~~~~~---r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg-ps~eq~~~y 328 (1065)
....+.+|++|.+| |+|+++ +|+.|.. +.+.+. .+.+||-|+.|..-.+|+|||+.+| ||+++++.|
T Consensus 361 -----~~fmglSFeTIS~s~G~NgAv-iHYsP~~e~n~~i~~~--kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~y 432 (606)
T KOG2413|consen 361 -----DHFMGLSFETISSSVGPNGAV-IHYSPPAETNRIVSPD--KIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAY 432 (606)
T ss_pred -----ccccCcCcceeeccCCCCcee-eecCCCccccceecCc--eEEEEccCcccccCccceeEEEecCCCCHHHHHHH
Confidence 23457899999978 999998 7776654 477777 8999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHHHhCCccccCCCCCcceeec--cccccCCccccC---CCCccccCCcE
Q 001503 329 EVLLKAHEAAIGALKP-GNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIG--LEFRESGLNLNA---KNDRVVKAKMI 402 (1065)
Q Consensus 329 ~~llea~~a~i~~lrP-Gv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIG--le~~E~p~~i~~---~~~~vLe~GMV 402 (1065)
..++..+.++..+.-| |+...-+...|+..+++.| -.|.|++||||| +.+||+|..++. .++..|++|||
T Consensus 433 T~VLkGhi~la~~vFP~~t~g~~lD~laR~~LW~~g----LDy~HgTGHGVG~fLnVhE~P~~is~r~~~~~~~l~ag~~ 508 (606)
T KOG2413|consen 433 TLVLKGHIALARAVFPKGTKGSVLDALARSALWKAG----LDYGHGTGHGVGSFLNVHEGPIGIGYRPYSSNFPLQAGMV 508 (606)
T ss_pred HHHHHhhhHhhhcccCCCCCcchhHHHHHHHHHhhc----cccCCCCCcccccceEeccCCceeeeeecCCCchhcCceE
Confidence 9999999999998877 8899999999999999999 457899999999 789999976653 45778999999
Q ss_pred EEEeeccccccCCCCCCCCCeeEEEEEEEEEEeCCC----------ceecCccCcccHhhhccccCCchh
Q 001503 403 FNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENN----------PEVVTCKSSKAVKDVAYSFNEDEE 462 (1065)
Q Consensus 403 fsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G----------~evLT~~~pk~l~~I~~~~~d~~~ 462 (1065)
+++|||+|. ++.||+|+|+.++|.+.+ .+.||- +|.....|.-.+..+||
T Consensus 509 ~s~EPGYY~---------dg~fGIRienv~~vvd~~~~~~~~~~L~fe~lT~-vP~q~klid~~LLs~eE 568 (606)
T KOG2413|consen 509 FSIEPGYYK---------DGEFGIRIENVVEVVDAGTKHNFRGFLTFEPLTL-VPYQTKLIDKSLLSEEE 568 (606)
T ss_pred eccCCcccc---------cCcceEEEeeEEEEEeccccccccceeeecccee-cceecccCChhhCCHHH
Confidence 999999993 678999999999996543 245564 67776666666655554
No 35
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.95 E-value=7.5e-27 Score=271.14 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=167.1
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEE
Q 001503 192 ELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQ 271 (1065)
Q Consensus 192 ~lRaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~ 271 (1065)
+.+..++++||+.||+||+|+..++. ++...|+ ||+|+.+|++.++..+.... ...|.. ..++||++|+
T Consensus 148 ~~~~~~s~~EI~~~R~AaeIa~~vl~-~~~~~Ik------pG~se~EIa~~ie~~ir~~~---~~~G~~-~g~aFPt~vS 216 (470)
T PTZ00053 148 RELEKLSEEQYQDLRRAAEVHRQVRR-YAQSVIK------PGVKLIDICERIESKSRELI---EADGLK-CGWAFPTGCS 216 (470)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHH-HHHHHhh------CCCCHHHHHHHHHHHHHHHH---HhcCCc-ccCCCCceee
Confidence 44455799999999999999999999 8999898 69999999999988775310 011221 2478887553
Q ss_pred eCCCCCcCCCccCC---cccccccCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhCCCCCCh
Q 001503 272 SGGAFDLRPSAASN---DELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKV 348 (1065)
Q Consensus 272 SG~~~~l~~h~~~~---~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~~a~i~~lrPGv~~ 348 (1065)
.|... +|+.|+ +++|+.| |+|.+|+|++|+|||+|++||++++ +++.++|+++++|++++|++++||+++
T Consensus 217 --~N~~a-aH~tP~~gd~~vLk~G--DvVkID~G~~vdGYiaD~ArTv~vg--~~~~~L~eAv~eA~~aaI~~~kpGv~~ 289 (470)
T PTZ00053 217 --LNHCA-AHYTPNTGDKTVLTYD--DVCKLDFGTHVNGRIIDCAFTVAFN--PKYDPLLQATKDATNTGIKEAGIDVRL 289 (470)
T ss_pred --cCccc-cCCCCCCCCCcEecCC--CeEEEEEeEEECCEEEeEEEEEEeC--HHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 45444 688885 6789999 9999999999999999999999997 689999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCccc---cCC-----CCCcceeecc-ccccCCc--cccCCCCccccCCcEEEEeeccc
Q 001503 349 SAAYQAALSVVEREAPELV---PNL-----TKSAGTGIGL-EFRESGL--NLNAKNDRVVKAKMIFNVSIGFQ 410 (1065)
Q Consensus 349 ~dV~~aa~~~l~~~Gpel~---~~~-----~h~~GHgIGl-e~~E~p~--~i~~~~~~vLe~GMVfsIEpg~~ 410 (1065)
++|..++++++++.| |. .+| .|.+|||||+ .+|+.|. .+.+++..+|++||||+|||.+.
T Consensus 290 ~dI~~AIqevies~G--~e~~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v~~~~~~~LeeGmVfaIEPf~s 360 (470)
T PTZ00053 290 SDIGAAIQEVIESYE--VEIKGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVKGGENTRMEEGELFAIETFAS 360 (470)
T ss_pred HHHHHHHHHHHHHcC--CcccCcccccccccCCcccCCCCccccCCCcCCeeCCCCCCEecCCCEEEEcceee
Confidence 999999999999999 53 333 6899999997 8998432 35577889999999999999876
No 36
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.94 E-value=7.1e-26 Score=261.52 Aligned_cols=202 Identities=18% Similarity=0.233 Sum_probs=166.4
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCcccccc-CCCCCCCCCCCEEEe
Q 001503 194 FAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKL-RAENVDICYPPIFQS 272 (1065)
Q Consensus 194 RaVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~-~~~~~~~~y~pIV~S 272 (1065)
-.+|+++||+.||+||+|+..++. ++...++ ||+|+.+|++.++..+.+.+...+.. .....+++||++|+
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~-~~~~~ik------pG~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vS- 82 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLK-SVVEACS------PGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCIS- 82 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH-HHHHhCC------CCCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEe-
Confidence 468999999999999999999999 8999988 69999999999988887542211111 01123678887776
Q ss_pred CCCCCcCCCccC--C--cccccccCcceEEEEccceeCCeEeeeEEEEEEc------CCHHHHHHHHHHHHHHHHHHHhC
Q 001503 273 GGAFDLRPSAAS--N--DELLYYDSGSVIICAVGSRYNSYCSNIARSFLID------ATPLQSKVYEVLLKAHEAAIGAL 342 (1065)
Q Consensus 273 G~~~~l~~h~~~--~--~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg------ps~eq~~~y~~llea~~a~i~~l 342 (1065)
.|... +|+.| + ++.|+.| |+|.+|+|+.|+|||+|++||++|| +++++.++|+++++|++++++++
T Consensus 83 -vN~~v-~H~~P~~~d~~~~Lk~G--DvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~v 158 (389)
T TIGR00495 83 -VNNCV-GHFSPLKSDQDYILKEG--DVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLV 158 (389)
T ss_pred -cCCee-eCCCCCCCCCCcCcCCC--CEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34444 68777 2 4789999 9999999999999999999999998 36789999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeecccccc-CCcc-ccCC-------CCccccCCcEEEEeeccc
Q 001503 343 KPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRE-SGLN-LNAK-------NDRVVKAKMIFNVSIGFQ 410 (1065)
Q Consensus 343 rPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E-~p~~-i~~~-------~~~vLe~GMVfsIEpg~~ 410 (1065)
|||+++++|+.++++++++.| |.. ....+|||||..+|+ .|.+ .+++ ....|++||||+|||++.
T Consensus 159 kPG~~~~dI~~ai~~v~~~~G--~~~-v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs 232 (389)
T TIGR00495 159 KPGNTNTQVTEAINKVAHSYG--CTP-VEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVS 232 (389)
T ss_pred CCCCcHHHHHHHHHHHHHHcC--Cee-cCCceeecccceeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeec
Confidence 999999999999999999999 543 345589999999998 6643 2332 256899999999999885
No 37
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.94 E-value=3.2e-26 Score=256.13 Aligned_cols=183 Identities=14% Similarity=0.155 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCC
Q 001503 201 EIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRP 280 (1065)
Q Consensus 201 EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~ 280 (1065)
+|+.||+|++|++.++. .+.+.++ ||+|+.||++.++..+... |+ +++||++|.+|... +
T Consensus 1 ~i~~~r~A~~I~~~~~~-~~~~~i~------pG~se~ei~~~~~~~i~~~-------g~---~~afp~~vs~n~~~---~ 60 (291)
T PRK08671 1 ELEKYLEAGKIASKVRE-EAAKLIK------PGAKLLDVAEFVENRIREL-------GA---KPAFPCNISINEVA---A 60 (291)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHhcc------CCCcHHHHHHHHHHHHHHc-------CC---ccCCCCEEeeCCCc---c
Confidence 48899999999999999 8888888 6999999999999999753 33 47888888887664 4
Q ss_pred CccCC---cccccccCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 001503 281 SAASN---DELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALS 357 (1065)
Q Consensus 281 h~~~~---~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~ 357 (1065)
|+.|+ ++.|+.| |+|.+|+|++|+||++|++||+++| ++++++|+++.+|++++++++|||++++||++++++
T Consensus 61 H~~p~~~d~~~l~~G--DvV~iD~G~~~dGY~aD~arT~~vG--~~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~ 136 (291)
T PRK08671 61 HYTPSPGDERVFPEG--DVVKLDLGAHVDGYIADTAVTVDLG--GKYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEE 136 (291)
T ss_pred CCCCCCCCCcccCCC--CEEEEEEeEEECCEEEEEEEEEEeC--hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66654 6789999 9999999999999999999999999 478999999999999999999999999999999999
Q ss_pred HHHHhCCccccCCCCCcceeecc-ccccCCcc--ccCCCCccccCCcEEEEeeccc
Q 001503 358 VVEREAPELVPNLTKSAGTGIGL-EFRESGLN--LNAKNDRVVKAKMIFNVSIGFQ 410 (1065)
Q Consensus 358 ~l~~~Gpel~~~~~h~~GHgIGl-e~~E~p~~--i~~~~~~vLe~GMVfsIEpg~~ 410 (1065)
++++.| +.. +.+.+|||||+ .+|+.|.+ +.++++.+|++||||+|||++.
T Consensus 137 vi~~~G--~~~-~~~~~GHgiG~~~~he~p~ip~~~~~~~~~le~GmV~aIEp~~t 189 (291)
T PRK08671 137 TIRSYG--FKP-IRNLTGHGLERYELHAGPSIPNYDEGGGVKLEEGDVYAIEPFAT 189 (291)
T ss_pred HHHHcC--Ccc-cCCCcccCcCCCcccCCCccCccCCCCCceeCCCCEEEEcceEE
Confidence 999999 765 46789999996 88998853 2456789999999999999875
No 38
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.94 E-value=1.1e-25 Score=252.17 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCc
Q 001503 199 QEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDL 278 (1065)
Q Consensus 199 e~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l 278 (1065)
-+||+.||+|++|++.++. .+.+.++ ||+|+.||++.++..+... |+ ..+||++|+.+...
T Consensus 2 ~~~i~~~r~A~~I~~~~~~-~~~~~i~------~G~se~el~~~~e~~~~~~-------g~---~~aFp~~vs~n~~~-- 62 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRR-EAADRIV------PGVKLLEVAEFVENRIREL-------GA---EPAFPCNISINECA-- 62 (295)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHCc------CCCCHHHHHHHHHHHHHHc-------CC---CCCCCcceecCCEe--
Confidence 3789999999999999999 8888888 6999999999999999753 33 36888887754432
Q ss_pred CCCccCC---cccccccCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 001503 279 RPSAASN---DELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAA 355 (1065)
Q Consensus 279 ~~h~~~~---~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa 355 (1065)
+|+.|+ ++.|+.| |+|.+|+|+.|+||++|++||+++|+ .++++|+++.+|++++++++|||++++||++++
T Consensus 63 -~H~~p~~~d~~~l~~G--DvV~iD~G~~~dGY~aD~arT~~vG~--~~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai 137 (295)
T TIGR00501 63 -AHFTPKAGDKTVFKDG--DVVKLDLGAHVDGYIADTAITVDLGD--QYDNLVKAAKDALYTAIKEIRAGVRVGEIGKAI 137 (295)
T ss_pred -eCCCCCCCcCccCCCC--CEEEEEEeEEECCEEEEEEEEEEeCc--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 466654 5789999 99999999999999999999999995 378999999999999999999999999999999
Q ss_pred HHHHHHhCCccccCCCCCcceeec-cccccCCc--cccCCCCccccCCcEEEEeeccc
Q 001503 356 LSVVEREAPELVPNLTKSAGTGIG-LEFRESGL--NLNAKNDRVVKAKMIFNVSIGFQ 410 (1065)
Q Consensus 356 ~~~l~~~Gpel~~~~~h~~GHgIG-le~~E~p~--~i~~~~~~vLe~GMVfsIEpg~~ 410 (1065)
++++++.| |.. +.|.+||||| +.+|+.+. .+.+++..+|++||||+|||++.
T Consensus 138 ~~vi~~~G--~~~-i~~~~GHgig~~~~h~g~~ip~i~~~~~~~le~GmV~aIEP~~~ 192 (295)
T TIGR00501 138 QEVIESYG--VKP-ISNLTGHSMAPYRLHGGKSIPNVKERDTTKLEEGDVVAIEPFAT 192 (295)
T ss_pred HHHHHHcC--Cee-ecCCCCcceecccccCCCccCeecCCCCCEeCCCCEEEEceeEE
Confidence 99999999 765 4688999999 57787632 35667789999999999999754
No 39
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.93 E-value=3.4e-25 Score=247.89 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCC
Q 001503 202 IMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPS 281 (1065)
Q Consensus 202 I~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h 281 (1065)
++.||+|++|+..++. ++.+.++ ||+|+.+|++.+++.+.+. |+ +++||+++. .|... +|
T Consensus 1 ~~~~r~Aa~I~~~a~~-~~~~~i~------pG~te~ei~~~~~~~i~~~-------G~---~~afp~~is--~n~~~-~H 60 (291)
T cd01088 1 LEKYREAGEIHRQVRK-YAQSLIK------PGMTLLEIAEFVENRIREL-------GA---GPAFPVNLS--INECA-AH 60 (291)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHcc------CCCcHHHHHHHHHHHHHHc-------CC---CCCCCceec--cCCEe-eC
Confidence 3689999999999999 8998888 6999999999999998753 32 477876543 33333 57
Q ss_pred ccCC---cccccccCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 001503 282 AASN---DELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSV 358 (1065)
Q Consensus 282 ~~~~---~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~ 358 (1065)
+.|+ ++.|+.| |+|.+|+|++|+||++|++||+.+++ .++++|+++++|++++++++|||++++||+++++++
T Consensus 61 ~~p~~~d~~~l~~G--DvV~iD~G~~~dGY~sD~arT~~vg~--~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~ 136 (291)
T cd01088 61 YTPNAGDDTVLKEG--DVVKLDFGAHVDGYIADSAFTVDFDP--KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEV 136 (291)
T ss_pred CCCCCCCCcccCCC--CEEEEEEEEEECCEEEEEEEEEecCh--hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 7765 3889999 99999999999999999999999985 888999999999999999999999999999999999
Q ss_pred HHHhCCccccCCCCCcceeec-cccccCCc--cccCCCCccccCCcEEEEeeccc
Q 001503 359 VEREAPELVPNLTKSAGTGIG-LEFRESGL--NLNAKNDRVVKAKMIFNVSIGFQ 410 (1065)
Q Consensus 359 l~~~Gpel~~~~~h~~GHgIG-le~~E~p~--~i~~~~~~vLe~GMVfsIEpg~~ 410 (1065)
+++.| +.. +.+.+||||| +.+|+.|. .+..++..+|++||||+|||++.
T Consensus 137 i~~~G--~~~-~~~~~GHgig~~~~h~~~~ip~~~~~~~~~le~gmV~aIEp~~s 188 (291)
T cd01088 137 IESYG--FKP-IRNLTGHSIERYRLHAGKSIPNVKGGEGTRLEEGDVYAIEPFAT 188 (291)
T ss_pred HHHcC--CEE-eecCCccCccCccccCCCccCccCCCCCCEeCCCCEEEEceeEE
Confidence 99999 765 4688999999 58888763 24566789999999999999765
No 40
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=99.91 E-value=1.2e-25 Score=229.77 Aligned_cols=159 Identities=42% Similarity=0.793 Sum_probs=124.9
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCcccccccccceEEEcCCcCCcEEEEEECCcEEEEEeCCcc
Q 001503 23 INLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKA 102 (1065)
Q Consensus 23 id~~~f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~ks~al~~wLtGye~p~tlllit~~~~~ll~s~kK~ 102 (1065)
||.+.|.+||++|++.|+++....|+++|||+|..|.++++++|.||+++|+||+||++|+|+|+||++.+++|||++|+
T Consensus 1 iD~~~F~~RL~~L~~~W~~~~~~~~~~~dal~i~~G~~~e~~~Y~Ks~aLq~WLlGYEfpdTiiv~tk~~i~~ltS~KKa 80 (163)
T PF14826_consen 1 IDKETFHKRLKRLYSSWKEHKDDLWGGADALVIAVGKADEDNPYSKSTALQTWLLGYEFPDTIIVFTKKKIHFLTSKKKA 80 (163)
T ss_dssp --HHHHHHHHHHHHHHHHCCCHHTSTT-SEEEEEE-S--TTSTT-HHHHHHHHHHSS--SSEEEEEETTEEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCccccCCCCEEEEEeCCcccCccchhHHHHHHHHhcccHhhhhhhhcCCEEEEEeCHHHH
Confidence 68899999999999999997655899999999999987889999999999999999999999999999999999999999
Q ss_pred chHHHHHhhc--cccCCcEEEEEe-ccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHHHHhhcC
Q 001503 103 SLLGMVKRSA--KDAVGADVVIHV-KAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNS 179 (1065)
Q Consensus 103 ~~le~~~~~~--~~~~~vei~~~~-kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~~~l~~~ 179 (1065)
.+|+++...+ ...++++++.+. ++++.+. .+|+.|++.|++ .+++||+..++.+.|+|++.|.+++..+
T Consensus 81 ~~L~~l~~~~~~~~~~~v~ll~R~k~d~~~~~-~~f~kl~~~ik~-------~g~~vG~~~Kd~~~G~f~~~w~~~l~~~ 152 (163)
T PF14826_consen 81 KFLEPLKKPAKEGGSIPVELLVRNKKDPEKNK-ANFEKLIEAIKK-------AGKKVGVLAKDKFEGKFVDEWKEALKKS 152 (163)
T ss_dssp HCCCCHCCCTTTT-SSEEEEEEE-TT-HHHHH-HHHHHHHHHHHC-------CTSEEEE-TT----SHHHHHHHHHHCHH
T ss_pred HHHHHHhhccccCCCceEEEEEeCCCCccchH-HHHHHHHHHHHh-------cCCeEeEecCCCCCCchHHHHHHHHhhc
Confidence 9999987532 234567777776 3323344 899999999993 6899999999999999999999999877
Q ss_pred CCeEEeccCC
Q 001503 180 GFQLSDVTNG 189 (1065)
Q Consensus 180 ~~~~vDvs~~ 189 (1065)
+++.||++..
T Consensus 153 ~~~~vDvs~~ 162 (163)
T PF14826_consen 153 GFEKVDVSSG 162 (163)
T ss_dssp CSEEEE-HHH
T ss_pred CCceeeccCC
Confidence 8999999864
No 41
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=99.87 E-value=1.2e-22 Score=189.84 Aligned_cols=90 Identities=29% Similarity=0.542 Sum_probs=79.3
Q ss_pred eeccccCceeeeecCcccceeeccCCcEEEEeCceeEEEEEee-cCCCcceeEEEEEecCCCCeEEEecccCCChHHHHH
Q 001503 833 FHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERV-GLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKE 911 (1065)
Q Consensus 833 f~g~~~~~~~~~~pt~~clv~l~e~P~~vi~l~eie~v~feRv-~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~ 911 (1065)
..|..++++++|+|+.+||+++.++|+++|+++||+.|+|||| +.++|||||+|++|||++++++|++||+++++.|++
T Consensus 4 V~c~~ka~~g~L~pl~~~l~f~~~kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I~~~e~~~l~~ 83 (95)
T PF08512_consen 4 VKCSYKANEGFLYPLEKCLLFGLEKPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSIDREEYDNLKD 83 (95)
T ss_dssp EEEEETTEEEEEEEESSEEEEECSSS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEEEGGGHHHHHH
T ss_pred eeEeccccCEEEEEccceEEEecCCCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeECHHHHHHHHH
Confidence 3344445999999999999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred HhhhcCceeee
Q 001503 912 WLDTTDIKYYE 922 (1065)
Q Consensus 912 wl~~~~i~~~e 922 (1065)
||++++|+|++
T Consensus 84 ~l~~~~i~~~~ 94 (95)
T PF08512_consen 84 FLKSKNIKIKN 94 (95)
T ss_dssp HHHHCCHHCCC
T ss_pred HHHHCCCEeec
Confidence 99999999875
No 42
>PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin. An 81kDa protein is predicted, containing several highly-charged domains and a stretch of 75 residues that share 47% identity with a portion of the high mobility group (HMG) protein HMG1. This HMG box probably constitutes the structure recognition element for cisplatin-modified DNA, the probable recognition motif being the local duplex unwinding and bending that occurs on formation of intra-strand cross-links []. SSRP1 is the human homologue of a recently identified mouse protein that binds to recombination signal sequences []. These sequences have been postulated to form stem-loop structures, further implicating local bends and unwinding in DNA as a recognition target for HMG-box proteins. A Drosophila melanogaster cDNA encoding an HMG-box-containing protein has also been isolated [, ]. This protein shares 50% sequence identity with human SSRP1. In vitro binding studies using Drosophila SSRP showed that the protein binds to single-stranded DNA and RNA, with highest affinity for nucleotides G and U. Comparison of the predicted amino acid sequences among SSRP family members reveals 48% identity, with structural conservation in the C terminus of the HMG box, as well as domains of highly charged residues. The most highly conserved regions lie in the poorly understood N terminus, suggesting that this portion of the protein is critical for its function []. This entry contains Pob3 Q04636 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p (IPR013953 from INTERPRO)-Pob3p) []. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 3F5R_A 2GCL_B 2GCJ_D.
Probab=99.22 E-value=1.2e-11 Score=131.63 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=59.5
Q ss_pred ceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceeccee--EEEEe
Q 001503 697 GTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDV--QFYVE 763 (1065)
Q Consensus 697 G~le~h~ng~r~~~~~~~~~~di~y~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~~v--QF~~e 763 (1065)
=.+++|.+.||+.+ +++++.|+|+||+++|++|++++.|+.++++|++||+||||+||.| ||-+|
T Consensus 151 ydi~~y~~~lrl~G--ktyDykI~y~~I~rlflLpk~d~~~~~~Vi~LdpPiRQGQT~Y~~lV~qf~~d 217 (222)
T PF03531_consen 151 YDIEMYPTFLRLHG--KTYDYKIQYSSISRLFLLPKPDDRHVFFVISLDPPIRQGQTRYPFLVMQFSKD 217 (222)
T ss_dssp EEEEE-SSEEEEEE--SSBEEEEEGGGEEEEEEEE-TTSSEEEEEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred cccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 37999999999998 8999999999999999999999999999999999999999999966 99855
No 43
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=99.03 E-value=8.6e-10 Score=108.17 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=95.0
Q ss_pred HHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCcccccccccceEEEcCC---cCCcEEEE-EECCcEEEEEeCCccchHH
Q 001503 31 RLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGY---EFPETVMV-FMKKQIQFLCSQKKASLLG 106 (1065)
Q Consensus 31 Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~ks~al~~wLtGy---e~p~tlll-it~~~~~ll~s~kK~~~le 106 (1065)
|+++|++.|++ .|+|++|++.+. | +.||||| .+...+++ +++++.+++++.. ++..
T Consensus 1 Rl~rl~~~m~~------~gid~lll~~~~-n-----------i~YltG~~~~~~~~~~~l~i~~~~~~l~~~~~--~~~~ 60 (132)
T PF01321_consen 1 RLERLRAAMAE------AGIDALLLTSPE-N-----------IRYLTGFRWQPGERPVLLVITADGAVLFVPKG--EYER 60 (132)
T ss_dssp HHHHHHHHHHH------TT-SEEEEESHH-H-----------HHHHHS--ST-TSSEEEEEEESSSEEEEEEGG--GHHH
T ss_pred CHHHHHHHHHH------CCCCEEEEcChh-h-----------ceEecCCCcCCCcceEEEEecccCcEEEeccc--cHHH
Confidence 89999999999 899999999886 3 7899999 55455555 7888778888632 3222
Q ss_pred HHHhhccccCCcEEEEEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHHHHhhcCCCeEEec
Q 001503 107 MVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDV 186 (1065)
Q Consensus 107 ~~~~~~~~~~~vei~~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~~~l~~~~~~~vDv 186 (1065)
..... .+..+++.|. ++.+.+.+.|+++ +..+++||++.. .++...+..+++.++ +.+++|+
T Consensus 61 ~~~~~---~~~~~v~~~~--------~~~~~~~~~l~~~----~~~~~~igve~~-~~~~~~~~~l~~~~~--~~~~v~~ 122 (132)
T PF01321_consen 61 AAEES---APDDEVVEYE--------DPYEAIAEALKKL----GPEGKRIGVEPD-SLSAAEYQRLQEALP--GAEFVDA 122 (132)
T ss_dssp HHHHH---TTSSEEEEES--------THHHHHHHHHHHH----TTTTSEEEEETT-TSBHHHHHHHHHHST--TSEEEEE
T ss_pred HHHhh---cCCceEEEEe--------cccchHHHHHHHh----CCCCCEEEEcCC-cChHHHHHHHHHhCC--CCEEEEc
Confidence 22222 2567788773 2456666777653 234589999975 689999999999998 8999999
Q ss_pred cCCccccccc
Q 001503 187 TNGLSELFAV 196 (1065)
Q Consensus 187 s~~l~~lRaV 196 (1065)
++.+..+|+|
T Consensus 123 ~~~i~~~R~I 132 (132)
T PF01321_consen 123 SPLIEELRMI 132 (132)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHcCcC
Confidence 9999999986
No 44
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=98.90 E-value=3.5e-08 Score=106.51 Aligned_cols=191 Identities=13% Similarity=0.132 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCC
Q 001503 198 DQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFD 277 (1065)
Q Consensus 198 de~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~ 277 (1065)
......-+|+||.+...+-+ ++...|+ ||||-.+|+..++...+. +...-| -..+++||+- +|=.+++
T Consensus 81 ~~~i~~d~rraAE~HRqvR~-yv~s~ik------PGmtm~ei~e~iEnttR~---li~e~g-l~aGi~FPtG-~SlN~cA 148 (397)
T KOG2775|consen 81 ESDIYQDLRRAAEAHRQVRK-YVQSIIK------PGMTMIEICETIENTTRK---LILENG-LNAGIGFPTG-CSLNHCA 148 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHhcc------CcccHHHHHHHHHHHHHH---HHHhcc-ccccccCCCc-ccccchh
Confidence 34456678899988888877 7777777 799999999999887652 111112 1235788753 3333444
Q ss_pred cCCCccCC---cccccccCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHH
Q 001503 278 LRPSAASN---DELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQA 354 (1065)
Q Consensus 278 l~~h~~~~---~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~a 354 (1065)
.|+.|+ ..+|+.+ |++.+|+|...+|-..|.+-|+.++| ....+..++.+|-..+|+.+--.++++||-++
T Consensus 149 --AHyTpNaGd~tVLqyd--DV~KiDfGthi~GrIiDsAFTv~F~p--~~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~a 222 (397)
T KOG2775|consen 149 --AHYTPNAGDKTVLKYD--DVMKIDFGTHIDGRIIDSAFTVAFNP--KYDPLLAAVREATNTGIKEAGIDVRLCDIGEA 222 (397)
T ss_pred --hhcCCCCCCceeeeec--ceEEEeccccccCeEeeeeeEEeeCc--cccHHHHHHHHHHhhhhhhcCceeeehhhhHH
Confidence 355554 3578999 99999999999999999999999986 35568888999999999999999999999999
Q ss_pred HHHHHHHhCCcccc------CCCCCcceeecc-ccccC---CccccCCCCccccCCcEEEEee
Q 001503 355 ALSVVEREAPELVP------NLTKSAGTGIGL-EFRES---GLNLNAKNDRVVKAKMIFNVSI 407 (1065)
Q Consensus 355 a~~~l~~~Gpel~~------~~~h~~GHgIGl-e~~E~---p~~i~~~~~~vLe~GMVfsIEp 407 (1065)
+++++.+.-.|+.. -...-.||+||- .+|-. | ++..+..+.+++|.+|+||.
T Consensus 223 iqEVmeSyEvEi~Gk~~~VKpIrnLnGHSI~~yrIH~gksVP-iVkgge~trmee~e~yAIET 284 (397)
T KOG2775|consen 223 IQEVMESYEVEINGKTYQVKPIRNLNGHSIAQYRIHGGKSVP-IVKGGEQTRMEEGEIYAIET 284 (397)
T ss_pred HHHHhhheEEEeCCceecceeccccCCCcccceEeecCcccc-eecCCcceeecCCeeEEEEe
Confidence 99999987543321 122347999994 45532 4 45678889999999999974
No 45
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=98.84 E-value=3.2e-08 Score=109.61 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=125.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccC-ccccc-cCCCCCCCCCCCEEEe
Q 001503 195 AVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPT-KAGVK-LRAENVDICYPPIFQS 272 (1065)
Q Consensus 195 aVKde~EI~~~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~-k~~~~-~~~~~~~~~y~pIV~S 272 (1065)
.+-++.-+..+|-|+.|+..+++ .+...+. +|.+-.+|+..-...+.... ++..+ -.. .-+++||+.|..
T Consensus 14 tia~~~vvtKYk~AgeI~n~~lk-~V~~~~~------~gasv~eiC~~GD~~i~E~t~kiYK~eK~~-~KGIAfPT~Isv 85 (398)
T KOG2776|consen 14 TIANDSVVTKYKMAGEIVNKVLK-SVVELCQ------PGASVREICEKGDSLILEETGKIYKKEKDF-EKGIAFPTSISV 85 (398)
T ss_pred ccccHHHHhhhhhHHHHHHHHHH-HHHHHhc------CCchHHHHHHhhhHHHHHHHHHHHhhhhhh-hccccccceecc
Confidence 34567778899999999999998 9999988 69999999998877776432 22211 111 235888875543
Q ss_pred CCCCCcCCCccCC--cccccccCcceEEEEccceeCCeEeeeEEEEEEcC------CHHHHHHHHHHHHHHHHHHHhCCC
Q 001503 273 GGAFDLRPSAASN--DELLYYDSGSVIICAVGSRYNSYCSNIARSFLIDA------TPLQSKVYEVLLKAHEAAIGALKP 344 (1065)
Q Consensus 273 G~~~~l~~h~~~~--~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vgp------s~eq~~~y~~llea~~a~i~~lrP 344 (1065)
.|+..+++...+ +..|+.| |+|.+|+|+++.||.|.++.|++|+| +....++..++..|.++++..|+|
T Consensus 86 -nncv~h~sPlksd~~~~Lk~G--DvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rllkp 162 (398)
T KOG2776|consen 86 -NNCVCHFSPLKSDADYTLKEG--DVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLLKP 162 (398)
T ss_pred -cceeeccCcCCCCCcccccCC--CEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHHhCC
Confidence 344433433333 5789999 99999999999999999999999984 457889999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhC
Q 001503 345 GNKVSAAYQAALSVVEREA 363 (1065)
Q Consensus 345 Gv~~~dV~~aa~~~l~~~G 363 (1065)
|.+-..|-+++.+.+.+.+
T Consensus 163 gn~n~~vT~~i~k~aas~~ 181 (398)
T KOG2776|consen 163 GNTNTQVTRAIVKTAASYG 181 (398)
T ss_pred CCCCchhhHHHHHHHHHhC
Confidence 9999999999999999887
No 46
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0045 Score=73.99 Aligned_cols=133 Identities=11% Similarity=0.136 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhccCCCCCCCCcEEEEeCCCCCCccccc-ccccceEEEcCCcCCcEEEEEECCcEEEEEeCCccchHHHH
Q 001503 30 TRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYL-KSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMV 108 (1065)
Q Consensus 30 ~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~~~~~~Y~-ks~al~~wLtGye~p~tlllit~~~~~ll~s~kK~~~le~~ 108 (1065)
.++.++++.|+. .+++|.|+.+.+ ...+.|. ....-..||+||.++.++.+||.++..++|+. +|+.++
T Consensus 10 ~~~~~~~~~~~~------~~i~aYi~Ps~D-aH~sEy~~~~D~R~~flsGFsGsag~Avit~~~a~lwtD~---RY~~QA 79 (606)
T KOG2413|consen 10 FELMRLRELMKS------PPIDAYILPSTD-AHQSEYIADRDERRAFLSGFSGSAGTAVITEEEAALWTDG---RYFQQA 79 (606)
T ss_pred HHHHHHHHHhcC------CCceEEEccCCc-hhhhhhhcchhhhhhhhcccCCCcceEEEecCcceEEEcc---HHHHHH
Confidence 378899999999 899999999887 4456675 23344689999999999999999999999987 788888
Q ss_pred HhhccccCCcEEEEEeccccCccccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHHHHhhcCCCeEEecc
Q 001503 109 KRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVT 187 (1065)
Q Consensus 109 ~~~~~~~~~vei~~~~kd~~~~~~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~~~l~~~~~~~vDvs 187 (1065)
..+... +.++..-+ .+.. ...+.|...+. .+.+||+++. ..+...+..|.+.|..++.++|.+.
T Consensus 80 ~~qld~--~W~l~k~~---~~~~-~v~~wl~~~l~--------~~~~vG~Dp~-Lis~~~~~~~~~~l~s~~~~Lv~i~ 143 (606)
T KOG2413|consen 80 EQQLDS--NWTLMKMG---EDVP-TVEEWLAKVLP--------EGSRVGIDPT-LISFDAWKQLEKSLTSKGLELVPIP 143 (606)
T ss_pred Hhhhcc--cceeeecc---CCCc-cHHHHHHHhCC--------CccccccCcc-eechhHHHhHHHHHhhCCCeEeecc
Confidence 766321 22333221 2212 45566666665 4778999987 6788889999988887777776553
No 47
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.0009 Score=81.53 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=15.6
Q ss_pred CCEEEEeeCCcccceeec
Q 001503 560 NEAVLFPIYGSMVPFHVA 577 (1065)
Q Consensus 560 ~~~vilPi~G~~vPfHi~ 577 (1065)
++++.-||+..+.||.-.
T Consensus 891 ~~s~fTP~~~~~~p~S~~ 908 (1516)
T KOG1832|consen 891 KQSTFTPSFSSKQPFSHD 908 (1516)
T ss_pred cccccCccccCCCCCCCC
Confidence 789999999999999655
No 48
>PLN03158 methionine aminopeptidase; Provisional
Probab=96.70 E-value=0.0079 Score=70.76 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=81.0
Q ss_pred CeEeeeEEEEEEc-CC--HHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCcccc-----CCCCCcceee
Q 001503 307 SYCSNIARSFLID-AT--PLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVP-----NLTKSAGTGI 378 (1065)
Q Consensus 307 GY~sditRT~~Vg-ps--~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~-----~~~h~~GHgI 378 (1065)
..++++.|+..|. |. +.++++.+++.+++++++++++||++-.+|..++...+.+.|. +.. .|++.+ .+
T Consensus 126 ~~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvTe~EI~~~v~~~~~~~Ga-~ps~l~y~~fp~sv--ct 202 (396)
T PLN03158 126 EPNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGG-YPSPLNYHFFPKSC--CT 202 (396)
T ss_pred ccccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCC-ccccccccCCCcee--ee
Confidence 4456778888886 43 5678889999999999999999999999999999999888772 211 122222 12
Q ss_pred ccccccC-CccccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 379 GLEFRES-GLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 379 Gle~~E~-p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
|+. +. +. ...+.++|++|++++|.+|.+ + .+|..-+..|++|+
T Consensus 203 s~N--~~i~H--gip~~r~L~~GDiV~iDvg~~-~---------~GY~aD~tRT~~VG 246 (396)
T PLN03158 203 SVN--EVICH--GIPDARKLEDGDIVNVDVTVY-Y---------KGCHGDLNETFFVG 246 (396)
T ss_pred ccc--ccccC--CCCCCccCCCCCEEEEEEeEE-E---------CCEEEeEEeEEEcC
Confidence 221 10 00 112578999999999999987 3 34777899999995
No 49
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=96.61 E-value=0.0014 Score=65.62 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCCCcEEEEeCCCC---CCccccc-ccccceEEEcCCcCCcEEEEE-EC--CcEEE
Q 001503 23 INLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPA---SEDLRYL-KSSALNIWLLGYEFPETVMVF-MK--KQIQF 95 (1065)
Q Consensus 23 id~~~f~~Rl~rL~~~mk~~~~~~~~~lDalli~~g~~---~~~~~Y~-ks~al~~wLtGye~p~tllli-t~--~~~~l 95 (1065)
|+.++|.+|+++|.+.|... .++||.++.. +.+..|. ++.+.++||||+..|++++++ .. ++.+|
T Consensus 1 i~~~~~~~RR~~l~~~l~~~--------~~vil~~~~~~~~~~D~~y~FrQ~s~F~YLTG~~ep~~~lvl~~~~~~~~~L 72 (134)
T PF05195_consen 1 IPAEEYAERRKKLAEKLPDN--------SIVILPGGPEKYRSNDIEYPFRQDSNFYYLTGFNEPDAVLVLKDGESGKSTL 72 (134)
T ss_dssp -EHHHHHHHHHHHHHHSHSS--------EEEEEE----EEEETTEEE-----HHHHHHH---STT-EEEEEECTTEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCC--------cEEEEECCCeeeecCCCccccccCCcEEEEeCCCCCCEEEEEecCCCCeEEE
Confidence 56899999999999999852 1444444441 2244555 788999999999999999999 33 36778
Q ss_pred EEeCCccchHHHHH
Q 001503 96 LCSQKKASLLGMVK 109 (1065)
Q Consensus 96 l~s~kK~~~le~~~ 109 (1065)
|+.+. ....+.|.
T Consensus 73 F~~~~-d~~~e~W~ 85 (134)
T PF05195_consen 73 FVPPK-DPDDEIWD 85 (134)
T ss_dssp EE-----CCGHHCC
T ss_pred EeCCC-CcCccEEC
Confidence 87543 33345554
No 50
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.60 E-value=0.016 Score=63.34 Aligned_cols=100 Identities=23% Similarity=0.227 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcce----eeccccccCCccccCCCCccc
Q 001503 322 PLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGT----GIGLEFRESGLNLNAKNDRVV 397 (1065)
Q Consensus 322 ~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GH----gIGle~~E~p~~i~~~~~~vL 397 (1065)
+.++++.+.+.+++.+++++++||++..+|..++...+.+.| ....+...-++ ..|..- ..|. ...++++|
T Consensus 2 ~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G--~~~~~~~~~~~~~~~~~~~~~-~~~h--~~~~~~~l 76 (238)
T cd01086 2 EGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHG--AYPAPLGYYGFPKSICTSVNE-VVCH--GIPDDRVL 76 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcC--CCcccccCCCCCcceecCCCC-ceeC--CCCCCccc
Confidence 357899999999999999999999999999999999999998 33222110111 112110 0010 11247899
Q ss_pred cCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeC
Q 001503 398 KAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGE 436 (1065)
Q Consensus 398 e~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe 436 (1065)
++|+++.+++|.. . ..|..-++.|+.|++
T Consensus 77 ~~Gd~v~id~g~~-~---------~GY~ad~~RT~~~G~ 105 (238)
T cd01086 77 KDGDIVNIDVGVE-L---------DGYHGDSARTFIVGE 105 (238)
T ss_pred CCCCEEEEEEEEE-E---------CCEEEEEEEEEECCC
Confidence 9999999999975 2 448889999999954
No 51
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.33 E-value=0.0031 Score=80.71 Aligned_cols=6 Identities=0% Similarity=0.589 Sum_probs=2.3
Q ss_pred HHHHHh
Q 001503 138 IFNAVR 143 (1065)
Q Consensus 138 l~~~lk 143 (1065)
+++.|.
T Consensus 42 vl~ll~ 47 (784)
T PF04931_consen 42 VLDLLK 47 (784)
T ss_pred HHHHHH
Confidence 333333
No 52
>PRK05716 methionine aminopeptidase; Validated
Probab=96.07 E-value=0.038 Score=60.83 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcce----eeccccccCCcccc-CCCCcc
Q 001503 322 PLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGT----GIGLEFRESGLNLN-AKNDRV 396 (1065)
Q Consensus 322 ~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GH----gIGle~~E~p~~i~-~~~~~v 396 (1065)
+.++++.+.+..++.+++++++||++..+|..++...+.+.| ....+....++ ..|.. . . .+. ..++++
T Consensus 12 ~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G--~~~~~~~~~~~~~~~~~g~~--~-~-~~h~~~~~~~ 85 (252)
T PRK05716 12 EKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQG--AIPAPLGYHGFPKSICTSVN--E-V-VCHGIPSDKV 85 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCC--CEecccCCCCCCcCeEeccc--c-e-eecCCCCCcc
Confidence 357789999999999999999999999999999999999988 32222111111 11211 0 0 111 135689
Q ss_pred ccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 397 VKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 397 Le~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
|++||++.+++|.. + ..|..-+.-|+.|.
T Consensus 86 l~~Gd~v~id~g~~-~---------~gY~~d~~RT~~vG 114 (252)
T PRK05716 86 LKEGDIVNIDVTVI-K---------DGYHGDTSRTFGVG 114 (252)
T ss_pred cCCCCEEEEEEEEE-E---------CCEEEEeEEEEECC
Confidence 99999999999986 3 45888899999883
No 53
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=95.85 E-value=0.05 Score=61.61 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccc--cCCCCccccC
Q 001503 322 PLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNL--NAKNDRVVKA 399 (1065)
Q Consensus 322 ~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i--~~~~~~vLe~ 399 (1065)
+.++++.+.+..+++++++.++||++..||...+...+.+.| ....| .+++...+..... +.+++++|++
T Consensus 2 ~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G--~~~af------p~~is~n~~~~H~~p~~~d~~~l~~ 73 (291)
T cd01088 2 EKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELG--AGPAF------PVNLSINECAAHYTPNAGDDTVLKE 73 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcC--CCCCC------CceeccCCEeeCCCCCCCCCcccCC
Confidence 357888899999999999999999999999999999999988 22223 2222222221111 2345689999
Q ss_pred CcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 400 KMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 400 GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
|+++.|.+|.. + .+|..-+.-|+.|.
T Consensus 74 GDvV~iD~G~~-~---------dGY~sD~arT~~vg 99 (291)
T cd01088 74 GDVVKLDFGAH-V---------DGYIADSAFTVDFD 99 (291)
T ss_pred CCEEEEEEEEE-E---------CCEEEEEEEEEecC
Confidence 99999999986 3 23655666666663
No 54
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.72 E-value=0.0062 Score=74.60 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=24.9
Q ss_pred CceeEEEEEeecC----CCcceeEEEEEecCCCCeEEEecccCCChHHHHHHhhh
Q 001503 865 GEIEIVNLERVGL----GQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDT 915 (1065)
Q Consensus 865 ~eie~v~feRv~~----~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~ 915 (1065)
+++.-||-+||-. +-||||-. ||+ -|.+||.. -.|-+++.+
T Consensus 1324 d~~sdvh~~r~k~p~fSSFRTf~a~----dYs----~iaTi~v~--R~~~Dlct~ 1368 (1516)
T KOG1832|consen 1324 DVMSDVHTRRVKHPLFSSFRTFDAI----DYS----DIATIPVD--RCLLDLCTE 1368 (1516)
T ss_pred hhhhhhcccccccchhhhhcccccc----ccc----cceeeecc--cchhhhhcC
Confidence 4566789999964 77888843 443 35556554 244455544
No 55
>PRK12896 methionine aminopeptidase; Reviewed
Probab=95.66 E-value=0.065 Score=59.11 Aligned_cols=109 Identities=19% Similarity=0.187 Sum_probs=75.8
Q ss_pred eEEEEEEc-CC--HHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcce----eecccccc
Q 001503 312 IARSFLID-AT--PLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGT----GIGLEFRE 384 (1065)
Q Consensus 312 itRT~~Vg-ps--~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GH----gIGle~~E 384 (1065)
-+|++.|. |. +..+++.+.+..++.++++.++||++-.+|...+...+.+.| ....+....++ +.|.. ..
T Consensus 4 ~~~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G--~~~~~~~~~~~~~~~~~~~n-~~ 80 (255)
T PRK12896 4 EGRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHG--AIPSPEGYYGFPGSTCISVN-EE 80 (255)
T ss_pred cCCceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCC--CEeCcccCCCCCcceEecCC-Ce
Confidence 36888886 43 357788889999999999999999999999999999999988 32222111111 12221 00
Q ss_pred CCccccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 385 SGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 385 ~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
.+. ...++++|++|.++.++.|.. + ..|..-+.-|++|.
T Consensus 81 ~~h--~~p~~~~l~~Gd~v~iD~g~~-~---------~gY~aD~~RT~~vG 119 (255)
T PRK12896 81 VAH--GIPGPRVIKDGDLVNIDVSAY-L---------DGYHGDTGITFAVG 119 (255)
T ss_pred eEe--cCCCCccCCCCCEEEEEEeEE-E---------CcEEEeeEEEEECC
Confidence 111 112458899999999999976 3 34777888888874
No 56
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=95.63 E-value=0.0082 Score=64.56 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=32.4
Q ss_pred CCcceeccccCceeeeecCcccceeeccCCcEEEEeCceeEEEEE
Q 001503 829 RDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLE 873 (1065)
Q Consensus 829 ~~l~f~g~~~~~~~~~~pt~~clv~l~e~P~~vi~l~eie~v~fe 873 (1065)
.+....|+.+|+||.|--..-.-|.-. .-.+++-+-.||-+||=
T Consensus 30 NeyNvTGLCnR~SCPLANSrYATVre~-~g~~yLymKt~ERaH~P 73 (303)
T KOG3064|consen 30 NEYNVTGLCNRSSCPLANSRYATVREE-NGVLYLYMKTIERAHMP 73 (303)
T ss_pred cccccceeeccccCcCccccceeEeec-CCEEEEEEechhhhcCc
Confidence 455788999999998866555555544 56778888888888873
No 57
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.051 Score=60.08 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccc-----cCCCCCcceeec-cccccCCccccCCCC
Q 001503 321 TPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELV-----PNLTKSAGTGIG-LEFRESGLNLNAKND 394 (1065)
Q Consensus 321 s~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~-----~~~~h~~GHgIG-le~~E~p~~i~~~~~ 394 (1065)
-+.++++....+++.++|..++|||+|..+|+.++.+++-+.|. |. -.|++++--++- .-.|--| +.
T Consensus 122 ie~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~-YPSPLnYy~FPKS~CTSVNEviCHGIP------D~ 194 (369)
T KOG2738|consen 122 IEGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGA-YPSPLNYYGFPKSVCTSVNEVICHGIP------DS 194 (369)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCC-cCCCcccCCCchhhhcchhheeecCCC------Cc
Confidence 34567888888999999999999999999999999998888873 22 135666544443 1223223 67
Q ss_pred ccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeC
Q 001503 395 RVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGE 436 (1065)
Q Consensus 395 ~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe 436 (1065)
++|+.|.+++|.+.+| + .+|---+..|++|.+
T Consensus 195 RpLedGDIvNiDVtvY-~---------~GyHGDlneTffvG~ 226 (369)
T KOG2738|consen 195 RPLEDGDIVNIDVTVY-L---------NGYHGDLNETFFVGN 226 (369)
T ss_pred CcCCCCCEEeEEEEEE-e---------ccccCccccceEeec
Confidence 9999999999999999 3 223334777888854
No 58
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.098 Score=57.86 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCC--CCCcceeeccccccCCccccCCCCccccC
Q 001503 322 PLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNL--TKSAGTGIGLEFRESGLNLNAKNDRVVKA 399 (1065)
Q Consensus 322 ~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~--~h~~GHgIGle~~E~p~~i~~~~~~vLe~ 399 (1065)
+.++++-+.+.++++++.+.++||++..+|.+.+.+++.++| ..+.+ .+++...+.+.+.|--..-.|++..+|++
T Consensus 12 ek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~g--a~pa~~gy~g~~~~~ciSvNe~v~HgiP~d~~vlk~ 89 (255)
T COG0024 12 EKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKG--AYPAFLGYKGFPFPTCISVNEVVAHGIPGDKKVLKE 89 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC--ceehhccCcCCCcceEeehhheeeecCCCCCcccCC
Confidence 346677777888888888999999999999999999999877 22211 12344556655544321122448899999
Q ss_pred CcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 400 KMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 400 GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
|.+++|..|.. + .| |-.=..-|+.|+
T Consensus 90 GDiv~IDvg~~-~--------dG-~~~Dsa~T~~vg 115 (255)
T COG0024 90 GDIVKIDVGAH-I--------DG-YIGDTAITFVVG 115 (255)
T ss_pred CCEEEEEEEEE-E--------CC-eeeeEEEEEECC
Confidence 99999999998 3 23 333445566664
No 59
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.98 E-value=0.054 Score=59.65 Aligned_cols=7 Identities=29% Similarity=0.710 Sum_probs=3.7
Q ss_pred cCCCCCC
Q 001503 968 DQGYEPS 974 (1065)
Q Consensus 968 d~~~e~s 974 (1065)
|++|+.+
T Consensus 41 D~ef~~~ 47 (240)
T PF05764_consen 41 DEEFESE 47 (240)
T ss_pred CccccCC
Confidence 5566543
No 60
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=94.67 E-value=0.021 Score=69.44 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCC-CCCCCCEEEeCCCCCcCCCcc
Q 001503 205 VKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENV-DICYPPIFQSGGAFDLRPSAA 283 (1065)
Q Consensus 205 ~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~-~~~y~pIV~SG~~~~l~~h~~ 283 (1065)
|.+|-..--++.. +++..++ ||..-.+|...+...+.... ..+.+... -.+|..-+-+-.+. +.. ..
T Consensus 259 mq~nY~fLl~aqe-~il~~lr------pG~ki~dVY~~~l~~v~k~~---Pel~~~~~k~lG~~iGlEFREss-l~i-na 326 (960)
T KOG1189|consen 259 MQENYEFLLAAQE-EILKLLR------PGTKIGDVYEKALDYVEKNK---PELVPNFTKNLGFGIGLEFRESS-LVI-NA 326 (960)
T ss_pred HHHHHHHHHHHHH-HHHHhhc------CCCchhHHHHHHHHHHHhcC---cchhhhhhhhcccccceeeeccc-ccc-cc
Confidence 4555555555555 6777787 69999999999988887531 11111000 00111001111111 211 23
Q ss_pred CCcccccccCcceEEEEccce-------eCCeEeeeEEEEEEc
Q 001503 284 SNDELLYYDSGSVIICAVGSR-------YNSYCSNIARSFLID 319 (1065)
Q Consensus 284 ~~~r~L~~G~~dvI~vdlG~~-------y~GY~sditRT~~Vg 319 (1065)
-++++|+.| .+..+.+|.. -+.|.--++=|++|+
T Consensus 327 Knd~~lk~g--mvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~ 367 (960)
T KOG1189|consen 327 KNDRVLKKG--MVFNISLGFSNLTNPESKNSYALLLSDTVLVG 367 (960)
T ss_pred cchhhhccC--cEEEEeeccccccCcccccchhhhccceeeec
Confidence 356899999 8999999974 244777789999996
No 61
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=94.40 E-value=0.29 Score=57.79 Aligned_cols=104 Identities=16% Similarity=0.243 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCc-ccc--CCCCCcceeeccccccCCccccC--C-CCcc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPE-LVP--NLTKSAGTGIGLEFRESGLNLNA--K-NDRV 396 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpe-l~~--~~~h~~GHgIGle~~E~p~~i~~--~-~~~v 396 (1065)
..+++-+++..++.++++.++||++..+|.+.+.+++.+.+.. |.. ...+++++.+.+.+.+.-....| + +.++
T Consensus 21 ~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vSvN~~v~H~~P~~~d~~~~ 100 (389)
T TIGR00495 21 KYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCISVNNCVGHFSPLKSDQDYI 100 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEecCCeeeCCCCCCCCCCcC
Confidence 4566777778888889999999999999999999999886511 100 11123333333332221111122 2 3489
Q ss_pred ccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeC
Q 001503 397 VKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGE 436 (1065)
Q Consensus 397 Le~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe 436 (1065)
|++|.++.|..|.. + .+|..-+..||.|..
T Consensus 101 Lk~GDvVkIDlG~~-i---------dGY~aD~arTv~vG~ 130 (389)
T TIGR00495 101 LKEGDVVKIDLGCH-I---------DGFIALVAHTFVVGV 130 (389)
T ss_pred cCCCCEEEEEEEEE-E---------CCEEEEEEEEEEECC
Confidence 99999999999987 4 348889999999964
No 62
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=93.47 E-value=0.63 Score=52.90 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeec-cccccCCccccCCCCccccCCc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIG-LEFRESGLNLNAKNDRVVKAKM 401 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIG-le~~E~p~~i~~~~~~vLe~GM 401 (1065)
..+++-+.+..++..+++.++||++..||.+.+...+.+.|. ...|+..+. ++ ...|-.| ++.+.++|++|.
T Consensus 7 ~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~--~~aFp~~vs--~n~~~~H~~p---~~~d~~~l~~GD 79 (295)
T TIGR00501 7 KWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGA--EPAFPCNIS--INECAAHFTP---KAGDKTVFKDGD 79 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCC--CCCCCccee--cCCEeeCCCC---CCCcCccCCCCC
Confidence 456777888888889999999999999999999999999883 334444332 11 1123333 234567899999
Q ss_pred EEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 402 IFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 402 VfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
++.|..|.. + .+|..-+.-|+.|.
T Consensus 80 vV~iD~G~~-~---------dGY~aD~arT~~vG 103 (295)
T TIGR00501 80 VVKLDLGAH-V---------DGYIADTAITVDLG 103 (295)
T ss_pred EEEEEEeEE-E---------CCEEEEEEEEEEeC
Confidence 999999987 3 34777888888884
No 63
>PRK08671 methionine aminopeptidase; Provisional
Probab=93.29 E-value=0.7 Score=52.44 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeecc-ccccCCccccCCCCccccCCc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGL-EFRESGLNLNAKNDRVVKAKM 401 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGl-e~~E~p~~i~~~~~~vLe~GM 401 (1065)
..+++-+.+..+..++++.++||++..||...+...+.+.| ....|+.+++ +|- ..|-.| .+.++++|++|.
T Consensus 4 ~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g--~~~afp~~vs--~n~~~~H~~p---~~~d~~~l~~GD 76 (291)
T PRK08671 4 KYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELG--AKPAFPCNIS--INEVAAHYTP---SPGDERVFPEGD 76 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcC--CccCCCCEEe--eCCCccCCCC---CCCCCcccCCCC
Confidence 46788888899999999999999999999999999999988 3333433222 221 123223 234567899999
Q ss_pred EEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 402 IFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 402 VfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
++.|..|.. + .+|..-+.-|+.|.
T Consensus 77 vV~iD~G~~-~---------dGY~aD~arT~~vG 100 (291)
T PRK08671 77 VVKLDLGAH-V---------DGYIADTAVTVDLG 100 (291)
T ss_pred EEEEEEeEE-E---------CCEEEEEEEEEEeC
Confidence 999999986 3 34777788888885
No 64
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.10 E-value=0.03 Score=64.98 Aligned_cols=19 Identities=21% Similarity=0.655 Sum_probs=11.4
Q ss_pred HHHHHhhhcCceeeecccccc
Q 001503 908 SIKEWLDTTDIKYYESRLNLN 928 (1065)
Q Consensus 908 ~ik~wl~~~~i~~~e~~~nln 928 (1065)
-..+|++.- ..+..++.||
T Consensus 11 e~ddWi~~~--~~~~~KlTi~ 29 (458)
T PF10446_consen 11 EEDDWIRQD--TDYKRKLTIN 29 (458)
T ss_pred chhhhhhcc--ccccccccHH
Confidence 356888877 3444555554
No 65
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=92.65 E-value=0.052 Score=58.64 Aligned_cols=16 Identities=6% Similarity=0.453 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 001503 795 NKINMDFQSFVNRVND 810 (1065)
Q Consensus 795 ~~ln~~f~~f~~~v~~ 810 (1065)
-+|.+-|..=+++|.+
T Consensus 80 ikLSkNyekALeQIde 95 (303)
T KOG3064|consen 80 IKLSKNYEKALEQIDE 95 (303)
T ss_pred HhcchhHHHHHHHHHH
Confidence 3444555555555544
No 66
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=92.23 E-value=1.1 Score=49.30 Aligned_cols=99 Identities=19% Similarity=0.240 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcce--eeccccccCCccc-cCCCCccccC
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGT--GIGLEFRESGLNL-NAKNDRVVKA 399 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GH--gIGle~~E~p~~i-~~~~~~vLe~ 399 (1065)
..+++.+.+.+++.++++.++||++-.+|...+...+.+.|. ...+....++ .++...+.. .+ ...++++|++
T Consensus 11 ~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~--~~~~~~~~~~~~~~~~~~n~~--~~H~~~~~~~l~~ 86 (247)
T TIGR00500 11 KIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGA--KPAFLGYYGFPGSVCISVNEV--VIHGIPDKKVLKD 86 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCC--CccccCCCCCCceeEeccccE--EEecCCCCcccCC
Confidence 356777788888888899999999999999999999999883 2221111111 111111111 11 1134789999
Q ss_pred CcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 400 KMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 400 GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
|.++.+..|.. . ..|..-+.-|+.|.
T Consensus 87 Gd~v~iD~g~~-~---------~gY~aD~~RT~~vG 112 (247)
T TIGR00500 87 GDIVNIDVGVI-Y---------DGYHGDTAKTFLVG 112 (247)
T ss_pred CCEEEEEEEEE-E---------CCEEEEEEEEEEcC
Confidence 99999999975 2 45888888899884
No 67
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=92.20 E-value=0.89 Score=54.68 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHh----CCccccCCCCCcceeeccc---cccCCccccCCCCcc
Q 001503 324 QSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVERE----APELVPNLTKSAGTGIGLE---FRESGLNLNAKNDRV 396 (1065)
Q Consensus 324 q~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~----Gpel~~~~~h~~GHgIGle---~~E~p~~i~~~~~~v 396 (1065)
.+++-+.+..++.++++.++||++..||...+...+++. |..-...|+. ++++. .|-.| ++++.++
T Consensus 161 ~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~g~aFPt----~vS~N~~aaH~tP---~~gd~~v 233 (470)
T PTZ00053 161 LRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKCGWAFPT----GCSLNHCAAHYTP---NTGDKTV 233 (470)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcccCCCCc----eeecCccccCCCC---CCCCCcE
Confidence 456666667777788889999999999998777655543 4110111222 23322 22222 2345789
Q ss_pred ccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEE
Q 001503 397 VKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIV 434 (1065)
Q Consensus 397 Le~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlV 434 (1065)
|+.|.|+.|..|.. + .+|-.-+.-||.|
T Consensus 234 Lk~GDvVkID~G~~-v---------dGYiaD~ArTv~v 261 (470)
T PTZ00053 234 LTYDDVCKLDFGTH-V---------NGRIIDCAFTVAF 261 (470)
T ss_pred ecCCCeEEEEEeEE-E---------CCEEEeEEEEEEe
Confidence 99999999999987 3 3477777778877
No 68
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=91.96 E-value=0.94 Score=48.16 Aligned_cols=96 Identities=22% Similarity=0.191 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH-HHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSV-VEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKM 401 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~-l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GM 401 (1065)
..+++...+.+++.++++.++||++-.+|...+... +.+.|.+... + ..--+.|-...= +. ..+ ++++|++|+
T Consensus 2 ~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~~~-~--~~~~~~g~~~~~-~~-~~~-~~~~l~~gd 75 (207)
T PF00557_consen 2 CMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEEPA-F--PPIVGSGPNTDL-PH-YTP-TDRRLQEGD 75 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTEES-S--ESEEEECCCCGE-TT-TBC-CSSBESTTE
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCccc-C--CceEecCCccee-cc-eec-cceeeecCC
Confidence 468888999999999999999999999999999987 6666621111 1 111122222110 21 223 578899999
Q ss_pred EEEEeeccccccCCCCCCCCCeeEEEEEEEEEE
Q 001503 402 IFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIV 434 (1065)
Q Consensus 402 VfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlV 434 (1065)
++.|+.+.. . ..|..-+.-|+++
T Consensus 76 ~v~id~~~~-~---------~gy~~d~~Rt~~~ 98 (207)
T PF00557_consen 76 IVIIDFGPR-Y---------DGYHADIARTFVV 98 (207)
T ss_dssp EEEEEEEEE-E---------TTEEEEEEEEEES
T ss_pred cceeeccce-e---------eeeEeeeeeEEEE
Confidence 999999876 2 3488888889976
No 69
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=91.89 E-value=1.5 Score=47.78 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCcccc---CCCCCcceeecccc-----ccCCccccCCCC
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVP---NLTKSAGTGIGLEF-----RESGLNLNAKND 394 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~---~~~h~~GHgIGle~-----~E~p~~i~~~~~ 394 (1065)
..+++-..+..++.++++.++||++-.||..++.+.+.+....+.. ......++.+.+.+ |-.|. ...+.
T Consensus 3 ~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~v~~n~~~~H~~p~--~~~~~ 80 (228)
T cd01089 3 KYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCISVNNCVCHFSPL--KSDAT 80 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeEeccCceeecCCCC--CCCCC
Confidence 5678888999999999999999999999988888777774311100 00111222211211 21221 01367
Q ss_pred ccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 395 RVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 395 ~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
++|++|.++.|..|.. + ..|..-+.-|+.|.
T Consensus 81 ~~l~~Gd~v~iD~g~~-~---------~GY~sD~tRT~~vG 111 (228)
T cd01089 81 YTLKDGDVVKIDLGCH-I---------DGYIAVVAHTIVVG 111 (228)
T ss_pred cccCCCCEEEEEEEEE-E---------CCEEEEEEEEEEeC
Confidence 8899999999999976 3 44888899999985
No 70
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=90.99 E-value=0.16 Score=65.47 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=8.7
Q ss_pred CChhHHHHHHHHH
Q 001503 779 YDPDEIEEEQRER 791 (1065)
Q Consensus 779 ~d~de~~~eq~e~ 791 (1065)
-.++|+.+|+++|
T Consensus 271 KT~EE~a~ee~er 283 (840)
T PF04147_consen 271 KTEEEIAKEEKER 283 (840)
T ss_pred CCHHHHHHHHHHH
Confidence 3678888775544
No 71
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=90.66 E-value=0.16 Score=60.02 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=24.1
Q ss_pred cccccchHHHhhhhccCccchhccCCccccccc
Q 001503 923 SRLNLNWRQILKTITDDPQSFIDDGGWEFLNLE 955 (1065)
Q Consensus 923 ~~~nlnW~~i~k~i~~d~~~f~~~ggw~fl~~~ 955 (1065)
+.-.+...+|-|.....-..|+..-|-..-+.+
T Consensus 402 ~g~~~tFs~i~keE~~~L~~fl~sK~lki~N~~ 434 (615)
T KOG0526|consen 402 SGTSYTFSNISKEEYGKLFDFLNSKGLKIRNEG 434 (615)
T ss_pred CCCeeeecccCHHHHHHHHHHHhhcCceeecCC
Confidence 335577788888888888889887777665553
No 72
>PRK12897 methionine aminopeptidase; Reviewed
Probab=90.56 E-value=2.3 Score=46.93 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccc----cCCCCCcceeeccccccCCccccCCCCcccc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELV----PNLTKSAGTGIGLEFRESGLNLNAKNDRVVK 398 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~----~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe 398 (1065)
..+++-+....++.++.+.++||++-.+|...+...+.+.|.... ..|+..+ ..|..-. .|. ...++++|+
T Consensus 12 ~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i--~~g~n~~-~~H--~~p~~~~l~ 86 (248)
T PRK12897 12 LMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAI--CASVNDE-MCH--AFPADVPLT 86 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcce--EeccCCE-eec--CCCCCcccC
Confidence 356777788888899999999999999999999999999883211 0111111 1221100 010 112467899
Q ss_pred CCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 399 AKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 399 ~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
+|.++.+..|.. + ..|..-+.-|+.|.
T Consensus 87 ~Gd~V~iD~g~~-~---------~GY~sD~tRT~~vG 113 (248)
T PRK12897 87 EGDIVTIDMVVN-L---------NGGLSDSAWTYRVG 113 (248)
T ss_pred CCCEEEEEeeEE-E---------CCEEEEEEEEEEcC
Confidence 999999999875 2 34777788888873
No 73
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=90.48 E-value=2.3 Score=46.65 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeecccccc-CCccccCCCCccccCCc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRE-SGLNLNAKNDRVVKAKM 401 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E-~p~~i~~~~~~vLe~GM 401 (1065)
..+++.+.+..++.++++.++||++-.+|...+...+.+.|.+ ..|+. .++...+. .|. - ..++++|++|.
T Consensus 3 ~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~--~~~~~----~v~~g~~~~~~H-~-~~~~~~l~~Gd 74 (243)
T cd01087 3 LMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGAR--LAYSY----IVAAGSNAAILH-Y-VHNDQPLKDGD 74 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCC--cCCCC----eEEECCCccccC-C-CcCCCcCCCCC
Confidence 4678888999999999999999999999999999999998843 22222 22222111 111 1 12467899999
Q ss_pred EEEEeeccccccCCCCCCCCCeeEEEEEEEEEE
Q 001503 402 IFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIV 434 (1065)
Q Consensus 402 VfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlV 434 (1065)
++.+..|.. . ..|..-+.-|+.|
T Consensus 75 ~v~vD~g~~-~---------~GY~ad~~Rt~~v 97 (243)
T cd01087 75 LVLIDAGAE-Y---------GGYASDITRTFPV 97 (243)
T ss_pred EEEEEeCce-E---------CCEeeeeeEEEEe
Confidence 999999875 2 3477777888877
No 74
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=90.41 E-value=2.4 Score=44.95 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcE
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMI 402 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMV 402 (1065)
..+++...+..+..++.+.++||++-.||...+...+.+.|.+ ...|+..+ +.|... ..+. ...++++|++|.+
T Consensus 3 ~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~-~~~~~~~v--~~g~~~-~~~h--~~~~~~~l~~gd~ 76 (208)
T cd01092 3 LLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAE-GPSFDTIV--ASGPNS-ALPH--GVPSDRKIEEGDL 76 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCC-CCCCCcEE--EECccc-cccC--CCCCCcCcCCCCE
Confidence 4678888888999999999999999999999999998888822 11222222 222221 1121 1224678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeEEEEEEEEEEeC
Q 001503 403 FNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGE 436 (1065)
Q Consensus 403 fsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe 436 (1065)
+.|+.|.. . ..|..-+.-|++|++
T Consensus 77 v~id~g~~-~---------~gy~~d~~RT~~~g~ 100 (208)
T cd01092 77 VLIDFGAI-Y---------DGYCSDITRTVAVGE 100 (208)
T ss_pred EEEEeeee-E---------CCEeccceeEEECCC
Confidence 99999875 2 347778889999863
No 75
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=90.18 E-value=0.32 Score=52.84 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=12.2
Q ss_pred EEeCceeEEEEEeecC--CCcceeEEE
Q 001503 862 VTLGEIEIVNLERVGL--GQKNFDMTI 886 (1065)
Q Consensus 862 i~l~eie~v~feRv~~--~~k~FD~~~ 886 (1065)
-+|.|-.-+.-||-.- |.|-|-..|
T Consensus 121 Cpl~da~C~EC~R~vw~hGGrif~Csf 147 (314)
T PF06524_consen 121 CPLQDAVCIECERGVWDHGGRIFKCSF 147 (314)
T ss_pred CcCCCcEeeeeecccccCCCeEEEeec
Confidence 3455555555555432 555554443
No 76
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=90.03 E-value=0.27 Score=63.50 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 001503 793 RKNKINMDFQSFVNRV 808 (1065)
Q Consensus 793 ~~~~ln~~f~~f~~~v 808 (1065)
++.+|+..|.....-+
T Consensus 210 ~~e~LD~~~~~l~~~l 225 (840)
T PF04147_consen 210 LTEKLDEDFKDLMSLL 225 (840)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 4445555555555544
No 77
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=89.93 E-value=0.15 Score=62.57 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001503 322 PLQSKVYEVLLKAHEAAIG 340 (1065)
Q Consensus 322 ~eq~~~y~~llea~~a~i~ 340 (1065)
...+.+|...+++.+.+..
T Consensus 296 ~~LK~ly~rfievLe~lS~ 314 (988)
T KOG2038|consen 296 HELKILYFRFIEVLEELSK 314 (988)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 4567777777777666544
No 78
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=89.11 E-value=0.23 Score=59.61 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 001503 232 KKVTHSLLMDEAEKAILE 249 (1065)
Q Consensus 232 ~GvTE~eLa~~ie~~l~~ 249 (1065)
||.+-.+|...++..+..
T Consensus 320 pG~~~g~iY~~~~~yi~~ 337 (1001)
T COG5406 320 PGTDSGIIYSEAEKYISS 337 (1001)
T ss_pred CCCCchhHHHHHHHHHHh
Confidence 577777777777776654
No 79
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=88.39 E-value=0.25 Score=60.70 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=15.9
Q ss_pred eeeccccceeeeccCCCccEEE-EEEE-----cccceeeCc
Q 001503 718 DIMFGNIKHAFFQPAEKEMITL-VHFH-----LHNHIMVGN 752 (1065)
Q Consensus 718 di~y~nIk~~ffqp~~~e~~v~-~h~~-----L~~pi~~Gk 752 (1065)
+=+|.|--|. |.-|++++ -||| +-..++.|.
T Consensus 695 ~P~f~nAd~t----slWEl~~ls~HfHPSVa~~Akall~G~ 731 (988)
T KOG2038|consen 695 NPLFCNADHT----SLWELLLLSKHFHPSVATFAKALLEGE 731 (988)
T ss_pred CccccCCccc----hHHHHHHHhhhcCchHHHHHHHHhcCc
Confidence 3457776663 44455544 3666 334455554
No 80
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=87.93 E-value=3.5 Score=42.99 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcE
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMI 402 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMV 402 (1065)
..+++...+..+..++.+.++||++-.++...+...+.+.| . .+...+--+.|-.. ..+.. ..++++|++|.+
T Consensus 3 ~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g--~--~~~~~~~v~~g~~~-~~~h~--~~~~~~i~~gd~ 75 (207)
T cd01066 3 RLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAG--G--YPAGPTIVGSGART-ALPHY--RPDDRRLQEGDL 75 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcC--C--CCCCCcEEEECccc-cCcCC--CCCCCCcCCCCE
Confidence 46778888899999999999999999999999999999988 3 22222222333210 11111 123679999999
Q ss_pred EEEeeccccccCCCCCCCCCeeEEEEEEEEEEeC
Q 001503 403 FNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGE 436 (1065)
Q Consensus 403 fsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe 436 (1065)
+.+..|.. . ..|..-+.-|+.|.+
T Consensus 76 v~~d~g~~-~---------~gy~~d~~rt~~~g~ 99 (207)
T cd01066 76 VLVDLGGV-Y---------DGYHADLTRTFVIGE 99 (207)
T ss_pred EEEEecee-E---------CCCccceeceeEcCC
Confidence 99999886 2 347778888888853
No 81
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=87.67 E-value=2.1 Score=49.48 Aligned_cols=94 Identities=19% Similarity=0.255 Sum_probs=54.7
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHHHhhhccCCCccCCCcceecccCCCcceeccccC-ceeee-ecCcccceeeccC
Q 001503 782 DEIEEE--QRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHK-ASAFI-VPTSSCLVELIET 857 (1065)
Q Consensus 782 de~~~e--q~e~~~~~~ln~~f~~f~~~v~~~~~~~~~~~~~~~~~~p~~~l~f~g~~~~-~~~~~-~pt~~clv~l~e~ 857 (1065)
+.|++| .+-.+++++.++.|+-...+-.++.. |. .. .+.+=.|+|+= -+|+. .|...|++.-.+.
T Consensus 54 ~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~-----G~-~~-----~e~~~~gIP~FWl~vL~Nh~~ls~~I~e~De 122 (337)
T PTZ00007 54 DDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALV-----QN-GG-----AEIGTPGLPQFWLTAMKNNNTLGSAIEEHDE 122 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc-----CC-cc-----cccccCCcccHHHHHHHcCccHhhhCCHHHH
Confidence 445544 34457777787888877777666431 10 00 01222345531 11111 2667788877777
Q ss_pred CcEEEEeCceeEEEEEeecCCC-cceeEEEEEec
Q 001503 858 PFLVVTLGEIEIVNLERVGLGQ-KNFDMTIVFKD 890 (1065)
Q Consensus 858 P~~vi~l~eie~v~feRv~~~~-k~FD~~~v~kd 890 (1065)
|.| --|.+|++..++ ... +.|-++|.|+.
T Consensus 123 ~iL-~~L~dI~ve~~~---~~~~~gf~I~F~F~~ 152 (337)
T PTZ00007 123 PIL-SYLSDISCEYTE---PNKQEGFILVFTFAP 152 (337)
T ss_pred HHH-HhhCceEEEEcc---CCCCCceEEEEEeCC
Confidence 876 578888776442 222 78999999975
No 82
>PRK12318 methionine aminopeptidase; Provisional
Probab=84.42 E-value=8.6 Score=43.71 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=69.4
Q ss_pred EEEc-C--CHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCC--CCcce--eeccccccCCcc
Q 001503 316 FLID-A--TPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLT--KSAGT--GIGLEFRESGLN 388 (1065)
Q Consensus 316 ~~Vg-p--s~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~--h~~GH--gIGle~~E~p~~ 388 (1065)
++|. | =+..+++-..+-.++.+++++++||++-.||...+..++.+.|. ...+. ...++ .+....+..- .
T Consensus 41 i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~--~~~~~~~~~~~f~~~v~~g~n~~~-~ 117 (291)
T PRK12318 41 IIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNA--IPAPLNYGSPPFPKTICTSLNEVI-C 117 (291)
T ss_pred eEECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCC--CccccccCCCCCCcceEeecccee-e
Confidence 3565 3 34466788888889999999999999999999888888887772 11100 00111 1111111110 0
Q ss_pred ccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 389 LNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 389 i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
-...++++|++|.++.++.|.. + ..|..-+.=|+.|.
T Consensus 118 H~~p~~~~l~~GD~V~vD~g~~-~---------~GY~aDitRT~~vG 154 (291)
T PRK12318 118 HGIPNDIPLKNGDIMNIDVSCI-V---------DGYYGDCSRMVMIG 154 (291)
T ss_pred cCCCCCCccCCCCEEEEEEeEE-E---------CcEEEEEEEEEECC
Confidence 0123578999999999999975 2 34788888898883
No 83
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=84.31 E-value=0.22 Score=62.24 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=10.7
Q ss_pred eeEEEEEecCCCCeEEEecccC
Q 001503 882 FDMTIVFKDFKKDVLRIDSIPS 903 (1065)
Q Consensus 882 FD~~~v~kd~~~~~~~i~~I~~ 903 (1065)
.+++|..=|.+|| ++++||-.
T Consensus 74 ~~~~iyViDshRP-~~L~Nv~~ 94 (622)
T PF02724_consen 74 EDVTIYVIDSHRP-WNLDNVFS 94 (622)
T ss_pred CceEEEEEeCCCC-ccHhhccC
Confidence 4555555565664 45444433
No 84
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=83.63 E-value=0.77 Score=52.92 Aligned_cols=17 Identities=29% Similarity=0.743 Sum_probs=8.9
Q ss_pred EecccCCChHHHHHHhhhc
Q 001503 898 IDSIPSSSLDSIKEWLDTT 916 (1065)
Q Consensus 898 i~~I~~~~l~~ik~wl~~~ 916 (1065)
.+.|| =++.|..|....
T Consensus 65 ~~~i~--G~elL~~~~~~~ 81 (324)
T PF05285_consen 65 ADGIP--GAELLEEWKEEE 81 (324)
T ss_pred ccCCC--hHHHHHHHhhcc
Confidence 44455 344566665544
No 85
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.15 E-value=0.77 Score=58.46 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=21.7
Q ss_pred ccccccCcceEEEEccce----------eCCeEeeeEEEEEE
Q 001503 287 ELLYYDSGSVIICAVGSR----------YNSYCSNIARSFLI 318 (1065)
Q Consensus 287 r~L~~G~~dvI~vdlG~~----------y~GY~sditRT~~V 318 (1065)
|.|.-. |+-++|.|+- .+-+|.||.|+..+
T Consensus 745 RLlR~d--dLQVidt~cpPkaP~~fQkel~Kf~idcn~ki~~ 784 (3015)
T KOG0943|consen 745 RLLRID--DLQVIDTGCPPKAPDCFQKELKKFCIDCNEKIEI 784 (3015)
T ss_pred hhhhhh--heeeeccCCCCCCchHHhhhHHhhcCCccceeee
Confidence 455666 7888887763 35688998888766
No 86
>PF13104 DUF3956: Protein of unknown function (DUF3956)
Probab=83.11 E-value=1.4 Score=34.38 Aligned_cols=27 Identities=48% Similarity=0.728 Sum_probs=25.0
Q ss_pred cccceeeccCCcEEEEeCceeEEEEEe
Q 001503 848 SSCLVELIETPFLVVTLGEIEIVNLER 874 (1065)
Q Consensus 848 ~~clv~l~e~P~~vi~l~eie~v~feR 874 (1065)
.+|.++.+-.|++|+++.-||++.+|=
T Consensus 2 ~sc~~fvngqp~lv~svagieiarlei 28 (45)
T PF13104_consen 2 ESCVVFVNGQPFLVVSVAGIEIARLEI 28 (45)
T ss_pred ceEEEEecCCeeEEEEEeeeEEEEEee
Confidence 479999999999999999999999984
No 87
>PRK07281 methionine aminopeptidase; Reviewed
Probab=82.81 E-value=11 Score=42.77 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCC------Ccceeecccccc-CCccccCCCCc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTK------SAGTGIGLEFRE-SGLNLNAKNDR 395 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h------~~GHgIGle~~E-~p~~i~~~~~~ 395 (1065)
..+++-+.+.+++.++.+.+|||++-.+|...+...+.+.| ....+.. .+.+.++...+. .|. ...+++
T Consensus 12 ~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g--~~~~~~G~~~~~~~f~~~v~~G~n~~~~H--~~p~~~ 87 (286)
T PRK07281 12 AMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEEN--VLPLQIGVDGAMMDYPYATCCGLNDEVAH--AFPRHY 87 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcC--CcccccCCCCcccCCCcceEEeccccccC--CCCCCc
Confidence 35677777888888899999999999999999999999887 2111100 011111211111 111 123568
Q ss_pred cccCCcEEEEeecc
Q 001503 396 VVKAKMIFNVSIGF 409 (1065)
Q Consensus 396 vLe~GMVfsIEpg~ 409 (1065)
+|++|.++.|..|.
T Consensus 88 ~l~~Gd~v~iD~g~ 101 (286)
T PRK07281 88 ILKEGDLLKVDMVL 101 (286)
T ss_pred CcCCCCEEEEEecc
Confidence 99999999999986
No 88
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=82.20 E-value=0.92 Score=57.82 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=19.0
Q ss_pred ceeeeecCcccceeeccC-CcEEEEeCceeEEEEEeec
Q 001503 840 ASAFIVPTSSCLVELIET-PFLVVTLGEIEIVNLERVG 876 (1065)
Q Consensus 840 ~~~~~~pt~~clv~l~e~-P~~vi~l~eie~v~feRv~ 876 (1065)
+..+-+|-.+|.-++.-- ||-|..|.-+--..||-|-
T Consensus 1556 na~f~amI~k~~qffQaL~~fAV~eLaiaAdaifePVR 1593 (3015)
T KOG0943|consen 1556 NAFFPAMIGKCKQFFQALLPFAVEELAIAADAIFEPVR 1593 (3015)
T ss_pred ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhh
Confidence 455566666665544332 4444445444445555543
No 89
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=81.55 E-value=1.5 Score=47.77 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=6.3
Q ss_pred eecCcccceeec
Q 001503 844 IVPTSSCLVELI 855 (1065)
Q Consensus 844 ~~pt~~clv~l~ 855 (1065)
-.|..+|-..++
T Consensus 209 ~~PCPKCg~et~ 220 (314)
T PF06524_consen 209 PIPCPKCGYETQ 220 (314)
T ss_pred CCCCCCCCCccc
Confidence 345566655444
No 90
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=81.32 E-value=0.47 Score=44.22 Aligned_cols=8 Identities=13% Similarity=0.007 Sum_probs=0.8
Q ss_pred cCChHHHH
Q 001503 1012 GKTWAELE 1019 (1065)
Q Consensus 1012 g~~wdele 1019 (1065)
+.-|-++=
T Consensus 40 e~p~p~fg 47 (101)
T PF09026_consen 40 EVPVPEFG 47 (101)
T ss_dssp ------HH
T ss_pred cccchhHH
Confidence 44555443
No 91
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=80.64 E-value=5.5 Score=44.65 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeecccccc--CCccccCCCCccccCC
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRE--SGLNLNAKNDRVVKAK 400 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E--~p~~i~~~~~~vLe~G 400 (1065)
+.+++.++-+++..++.+-+|||+++-+|.+...+..++.- ....+..++|+..|+...- ..+..++++.++|+.+
T Consensus 87 d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li--~e~gl~aGi~FPtG~SlN~cAAHyTpNaGd~tVLqyd 164 (397)
T KOG2775|consen 87 DLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLI--LENGLNAGIGFPTGCSLNHCAAHYTPNAGDKTVLKYD 164 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHH--HhccccccccCCCcccccchhhhcCCCCCCceeeeec
Confidence 45666666777778888999999999999887765444322 1122334567777765421 1223478889999999
Q ss_pred cEEEEeeccc
Q 001503 401 MIFNVSIGFQ 410 (1065)
Q Consensus 401 MVfsIEpg~~ 410 (1065)
.|+-|.-|..
T Consensus 165 DV~KiDfGth 174 (397)
T KOG2775|consen 165 DVMKIDFGTH 174 (397)
T ss_pred ceEEEecccc
Confidence 9999998877
No 92
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=80.64 E-value=17 Score=39.74 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcc----eeeccccccCCccccCCCCcccc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAG----TGIGLEFRESGLNLNAKNDRVVK 398 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~G----HgIGle~~E~p~~i~~~~~~vLe 398 (1065)
-++++-..+-.++.++++.+|||++-.+|...+...+.+.|..-.. +....+ -+.|..-. .|. ...++++|+
T Consensus 3 ~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~-~~~~~~~~~~v~~G~~~~-~~H--~~~~~r~l~ 78 (228)
T cd01090 3 LIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFP-EVELMDTWTWFQSGINTD-GAH--NPVTNRKVQ 78 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCC-cccccCcceEEEeecccc-ccC--CCCCCcccC
Confidence 4678888889999999999999999999999998888887621000 101011 12232211 111 224578999
Q ss_pred CCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 399 AKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 399 ~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
+|.++.+..+.. + ..|..-++=|+.|.
T Consensus 79 ~GD~v~~d~g~~-~---------~GY~ad~~RT~~vG 105 (228)
T cd01090 79 RGDILSLNCFPM-I---------AGYYTALERTLFLD 105 (228)
T ss_pred CCCEEEEEEeEE-E---------CCEeeeeEEEEECC
Confidence 999999998864 2 33777777888873
No 93
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=79.85 E-value=6.3 Score=45.28 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhC-Cccc--cCCCCCcceeecccc-----ccCCccccCCCCc
Q 001503 324 QSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREA-PELV--PNLTKSAGTGIGLEF-----RESGLNLNAKNDR 395 (1065)
Q Consensus 324 q~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~G-pel~--~~~~h~~GHgIGle~-----~E~p~~i~~~~~~ 395 (1065)
.+-+-+.+..+...+++.+.||++..+|....-++|.+.- --|. ..+-+++.+.+-+.+ |-+| +..+.+.
T Consensus 24 Yk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT~Isvnncv~h~sP--lksd~~~ 101 (398)
T KOG2776|consen 24 YKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPTSISVNNCVCHFSP--LKSDADY 101 (398)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccceecccceeeccCc--CCCCCcc
Confidence 3445566777888888999999999999988877766542 1011 224444544444433 3345 2234478
Q ss_pred cccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeC
Q 001503 396 VVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGE 436 (1065)
Q Consensus 396 vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe 436 (1065)
+|++|.|+-|..|+. + .+|...+.+|++|+.
T Consensus 102 ~Lk~GDvVKIdLG~H-i---------DGfiA~vaHT~VV~~ 132 (398)
T KOG2776|consen 102 TLKEGDVVKIDLGVH-I---------DGFIALVAHTIVVGP 132 (398)
T ss_pred cccCCCEEEEEeeee-e---------ccceeeeeeeEEecc
Confidence 999999999999998 4 348889999999975
No 94
>PRK09795 aminopeptidase; Provisional
Probab=79.25 E-value=15 Score=43.02 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcEE
Q 001503 324 QSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIF 403 (1065)
Q Consensus 324 q~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMVf 403 (1065)
.+++...+-.+..++++.+|||++=.+|...+...+.+.|.+.. .|...++.|- . .-.|. ...++++|++|.++
T Consensus 136 ~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~-~f~~iv~sG~--~-~~~ph--~~~~~~~l~~gd~v 209 (361)
T PRK09795 136 IRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKA-SFDTIVASGW--R-GALPH--GKASDKIVAAGEFV 209 (361)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcC-CCCeEEEEec--c-ccccC--CCCCCceecCCCEE
Confidence 45666667777778888999999999999999989988884321 2322233321 1 01121 11356899999999
Q ss_pred EEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 404 NVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 404 sIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
.+..|.. -.+|..-+.=|+.|.
T Consensus 210 ~~d~g~~----------~~gY~sd~tRt~~~g 231 (361)
T PRK09795 210 TLDFGAL----------YQGYCSDMTRTLLVN 231 (361)
T ss_pred EEEeccc----------cCCEeecceEEEEeC
Confidence 9999875 244777788888884
No 95
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=78.95 E-value=14 Score=40.36 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCC--CChhHHHHHHHHHHHHhCCccc-cCCCCCcceeec-cccccCCccccCCCCcccc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPG--NKVSAAYQAALSVVEREAPELV-PNLTKSAGTGIG-LEFRESGLNLNAKNDRVVK 398 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPG--v~~~dV~~aa~~~l~~~Gpel~-~~~~h~~GHgIG-le~~E~p~~i~~~~~~vLe 398 (1065)
.+.+.-..+.++++.+.+.++|| ++-.+|.+.+..++...|- +. ..|+..+.-|.. ...|-.| ++..+++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~-~~~~~f~~~v~~g~n~~~~H~~p---~~~~~r~l~ 80 (224)
T cd01085 5 AHIRDGVALVEFLAWLEQEVPKGETITELSAADKLEEFRRQQKG-YVGLSFDTISGFGPNGAIVHYSP---TEESNRKIS 80 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCC-CcCCCcceEEEecCccCcCCCCc---CcccCcccC
Confidence 34455556678888899999999 9999999999888776541 21 122222222221 1122222 112378999
Q ss_pred CCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEE
Q 001503 399 AKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIV 434 (1065)
Q Consensus 399 ~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlV 434 (1065)
+|.++.|..|.. + ..|..-+.-|+.|
T Consensus 81 ~GD~V~iD~g~~-~---------~gY~aD~~RT~~v 106 (224)
T cd01085 81 PDGLYLIDSGGQ-Y---------LDGTTDITRTVHL 106 (224)
T ss_pred CCCEEEEEeCcc-C---------CCcccccEEeecC
Confidence 999999999875 2 3366666777776
No 96
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.62 E-value=2.3 Score=47.01 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=4.1
Q ss_pred HHHhhhhc
Q 001503 930 RQILKTIT 937 (1065)
Q Consensus 930 ~~i~k~i~ 937 (1065)
++-|+.++
T Consensus 11 Gnrm~~LL 18 (240)
T PF05764_consen 11 GNRMKKLL 18 (240)
T ss_pred hHHHHHHH
Confidence 44555554
No 97
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=77.29 E-value=0.75 Score=57.57 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=9.3
Q ss_pred EEEecccCCChHHHHHHhhhc
Q 001503 896 LRIDSIPSSSLDSIKEWLDTT 916 (1065)
Q Consensus 896 ~~i~~I~~~~l~~ik~wl~~~ 916 (1065)
+.++-+|+.-+..|+.-+.+.
T Consensus 28 I~~~l~PV~gy~el~~~~~~~ 48 (622)
T PF02724_consen 28 IQYSLVPVSGYSELERAYEEL 48 (622)
T ss_pred CCeeEEEeCCHHHHHHHHHHH
Confidence 344444444444444444443
No 98
>PRK10879 proline aminopeptidase P II; Provisional
Probab=72.42 E-value=26 Score=42.22 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcE
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMI 402 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMV 402 (1065)
..+++...+..++.++++.++||++=.+|...+...+.+.|... ..|+..++. |-.-. .|. ...++.+|++|.+
T Consensus 181 ~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~-~~~~~iv~~--G~na~-~~H--~~~~~~~l~~GDl 254 (438)
T PRK10879 181 VLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARY-PSYNTIVGS--GENGC-ILH--YTENESEMRDGDL 254 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCC-CCCCcEEEE--cCccc-ccc--CCCCccccCCCCE
Confidence 35677777888888999999999999999999988888888322 122222222 21110 111 1235678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeEEEEEEEEEE
Q 001503 403 FNVSIGFQNLQNQTNKPKNQMFSLLLADTVIV 434 (1065)
Q Consensus 403 fsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlV 434 (1065)
+.+..|.. . ..|..-+.=|+.|
T Consensus 255 VliD~G~~-~---------~GY~sDitRT~~v 276 (438)
T PRK10879 255 VLIDAGCE-Y---------KGYAGDITRTFPV 276 (438)
T ss_pred EEEEeCeE-E---------CCEEEEeEEEEEE
Confidence 99999876 2 3487788888887
No 99
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=72.14 E-value=1.9 Score=45.93 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=18.1
Q ss_pred ceeccccCceeeeecCcccceeeccCCcEEEEeCceeEEEE
Q 001503 832 GFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNL 872 (1065)
Q Consensus 832 ~f~g~~~~~~~~~~pt~~clv~l~e~P~~vi~l~eie~v~f 872 (1065)
...|+..|.+|.|--..-.-|... .--+++-+-.+|-|||
T Consensus 32 NVTGLC~RqSCPLANSrYATVr~d-ngkLyLymKtpERaH~ 71 (303)
T COG5129 32 NVTGLCDRQSCPLANSRYATVRAD-NGKLYLYMKTPERAHV 71 (303)
T ss_pred ccceeeccccCcCccCcceEEEec-CCEEEEEecChhhccC
Confidence 345555555555443333333333 3334444455555554
No 100
>PRK14576 putative endopeptidase; Provisional
Probab=71.21 E-value=29 Score=41.38 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcE
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMI 402 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMV 402 (1065)
..+++-..+-.++.++++.++||++=.+|...+...+.+.|......+ ..++ .|- +-.|. . ..+++.|++|.+
T Consensus 185 ~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~~~~-~~v~--~G~--~~~~h-~-~~~~~~l~~Gd~ 257 (405)
T PRK14576 185 HLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSRF-NLIS--VGD--NFSPK-I-IADTTPAKVGDL 257 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcCCCC-CEEE--ECC--cccCC-C-CCCCcccCCCCE
Confidence 456777777888888899999999999999999888877762111111 1121 121 11121 1 134678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 403 FNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 403 fsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
+.+..|.. . .+|..-+.=|+++.
T Consensus 258 v~~d~g~~-~---------~GY~sd~tRT~~~G 280 (405)
T PRK14576 258 IKFDCGID-V---------AGYGADLARTFVLG 280 (405)
T ss_pred EEEEecee-E---------CCEEeeeeEEEECC
Confidence 99999875 2 34777777888774
No 101
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=69.88 E-value=1.5 Score=55.75 Aligned_cols=13 Identities=8% Similarity=-0.376 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHH
Q 001503 233 KVTHSLLMDEAEK 245 (1065)
Q Consensus 233 GvTE~eLa~~ie~ 245 (1065)
|..|.|++-.+.=
T Consensus 98 ~~~e~e~~~~lnP 110 (787)
T PF03115_consen 98 GGLELELCVFLNP 110 (787)
T ss_dssp -------------
T ss_pred CcceeEeeeecCc
Confidence 4444444443333
No 102
>PHA02664 hypothetical protein; Provisional
Probab=68.78 E-value=6.3 Score=44.21 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=17.1
Q ss_pred cccceeeceeeeee------ccccC--CCceEEEEE
Q 001503 570 SMVPFHVATIRTVS------SQQDT--NRNCYIRII 597 (1065)
Q Consensus 570 ~~vPfHi~tiKn~s------~~~e~--~~~~~lrin 597 (1065)
|+||=|+-.-+++| -++-- +..-|+|+.
T Consensus 179 yavpghvvlarsasmlcdc~psdpqrrnvifymrls 214 (534)
T PHA02664 179 YAVPGHVVLARSASMLCDCSPSDPQRRNVIFYMRLS 214 (534)
T ss_pred cccCceEEEecchhhhhcCCCCCccccceEEEEEec
Confidence 68898986666554 34421 334588874
No 103
>PRK15173 peptidase; Provisional
Probab=68.12 E-value=46 Score=38.43 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcE
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMI 402 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMV 402 (1065)
..+++-..+..++.++.+.++||++-.+|..++...+...|..-...+ +. .+.|-. -.|.. ..+++.|++|.+
T Consensus 103 ~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~~~~~~-~~--i~~G~~--~~~h~--~~~~~~l~~Gd~ 175 (323)
T PRK15173 103 RLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRF-HL--ISVGAD--FSPKL--IPSNTKACSGDL 175 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCCCCCC-cE--EEECCC--CccCC--CCCCCccCCCCE
Confidence 356777777888888889999999999999988776666551100111 11 112221 11211 124678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 403 FNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 403 fsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
+.+..|.. -..|..-+.=|+.|.
T Consensus 176 V~iD~g~~----------~~GY~aDitRT~~vG 198 (323)
T PRK15173 176 IKFDCGVD----------VDGYGADIARTFVVG 198 (323)
T ss_pred EEEEeCcc----------CCCEeeeeEEEEEcC
Confidence 99998874 244888888899884
No 104
>PHA02664 hypothetical protein; Provisional
Probab=66.08 E-value=4.3 Score=45.49 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=7.1
Q ss_pred eEEEEEE-EEEEeCCCce
Q 001503 424 FSLLLAD-TVIVGENNPE 440 (1065)
Q Consensus 424 ~gv~ieD-TVlVTe~G~e 440 (1065)
|-++++- +|.||--|+|
T Consensus 209 fymrlsg~mvrvtvpgae 226 (534)
T PHA02664 209 FYMRLSGTMVRVTVPGAE 226 (534)
T ss_pred EEEEecCcEEEEEecCce
Confidence 3344433 3344544443
No 105
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.18 E-value=3.8 Score=48.28 Aligned_cols=10 Identities=10% Similarity=0.123 Sum_probs=4.3
Q ss_pred CChHHHHHHH
Q 001503 1013 KTWAELEREA 1022 (1065)
Q Consensus 1013 ~~wdele~~a 1022 (1065)
+-||++..-+
T Consensus 139 e~eDd~~~s~ 148 (483)
T KOG2773|consen 139 EGEDDLQDSQ 148 (483)
T ss_pred cccchhhhhc
Confidence 3355544333
No 106
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=63.82 E-value=33 Score=40.44 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCc
Q 001503 322 PLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKM 401 (1065)
Q Consensus 322 ~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GM 401 (1065)
+..+++......++.++++.++||++-.+|...+...+.+.|.+.. .| ..-++...+-.... ...++.++++|-
T Consensus 161 ~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~~-sf----~~iv~~G~n~a~pH-~~~~~~~~~~gd 234 (384)
T COG0006 161 AKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGP-SF----DTIVASGENAALPH-YTPSDRKLRDGD 234 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCcc-Cc----CcEEeccccccCcC-CCCCcccccCCC
Confidence 3578889999999999999999999999999999999999983221 22 22222222222111 123466779999
Q ss_pred EEEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 402 IFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 402 VfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
.+.|..|.. . ..|..-+.=|+.+.
T Consensus 235 ~vliD~G~~-~---------~gY~sDiTRT~~~G 258 (384)
T COG0006 235 LVLIDLGGV-Y---------NGYCSDITRTFPIG 258 (384)
T ss_pred EEEEEeeeE-E---------CCccccceeEEecC
Confidence 999999876 2 23666677777774
No 107
>PRK14575 putative peptidase; Provisional
Probab=63.61 E-value=50 Score=39.35 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCCcE
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMI 402 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~GMV 402 (1065)
..+++-..+.+++.++++.++||++=.+|..++...+...|. .. ++...--+.|-. ..|.. ..++++|++|.+
T Consensus 186 ~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~--~~-~~~~~~v~~G~~--~~~h~--~~~~~~l~~Gd~ 258 (406)
T PRK14575 186 RLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSE--TH-FSRFHLISVGAD--FSPKL--IPSNTKACSGDL 258 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCC--Cc-CCcCceEEECCC--cccCC--CCCCCcCCCCCE
Confidence 456777778888889999999999999999998777766662 11 111101112222 22221 135678999999
Q ss_pred EEEeeccccccCCCCCCCCCeeEEEEEEEEEEe
Q 001503 403 FNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVG 435 (1065)
Q Consensus 403 fsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVT 435 (1065)
+.+..|.. . .+|..-+.=|+.|.
T Consensus 259 v~iD~g~~-~---------~GY~sditRT~~vG 281 (406)
T PRK14575 259 IKFDCGVD-V---------DGYGADIARTFVVG 281 (406)
T ss_pred EEEEeceE-E---------CCEeeeeEEEEECC
Confidence 99998874 1 34778888899883
No 108
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=61.85 E-value=16 Score=44.05 Aligned_cols=34 Identities=15% Similarity=0.422 Sum_probs=25.0
Q ss_pred ChHHHHHHhhhcCceeeecccccc-hHHHhhhhccCccchhc
Q 001503 905 SLDSIKEWLDTTDIKYYESRLNLN-WRQILKTITDDPQSFID 945 (1065)
Q Consensus 905 ~l~~ik~wl~~~~i~~~e~~~nln-W~~i~k~i~~d~~~f~~ 945 (1065)
.++-..+|+.... --+| |--+|+..+.+++.|++
T Consensus 175 ~~EEaee~~~~r~-------k~~Nt~~s~m~a~~~~~~~~~e 209 (555)
T KOG2393|consen 175 TAEEAEEWFMERF-------KVMNTWFSLMEAGNSDSYVLLE 209 (555)
T ss_pred cHHHHHHHHHHhh-------hhHHHHHHHHHHhccccchhhc
Confidence 4667778876552 2356 99999999999887764
No 109
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=60.21 E-value=2.9 Score=52.91 Aligned_cols=15 Identities=0% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh
Q 001503 794 KNKINMDFQSFVNRV 808 (1065)
Q Consensus 794 ~~~ln~~f~~f~~~v 808 (1065)
..+|+..|..|+.+=
T Consensus 381 ~~~l~~v~~ky~~~q 395 (713)
T PF03344_consen 381 QSRLSEVIEKYARKQ 395 (713)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 455666666665443
No 110
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=59.04 E-value=20 Score=32.73 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=43.8
Q ss_pred CccCCceEEEEecc--eeeecCCCCc--eeeeeccccceeeeccCCCccEEEEEEEcccceeeCceecc
Q 001503 692 GRKIPGTLEAHLNG--FRFATSRPEE--RVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTK 756 (1065)
Q Consensus 692 ~kr~~G~le~h~ng--~r~~~~~~~~--~~di~y~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~ 756 (1065)
.||..|+|.+.... +.++....+. .+.|.|.+|+.++-=|.- .--|+|-+-++++- |...+.
T Consensus 9 yKK~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~-s~Kv~Lki~~~~~~--~~~~~~ 74 (79)
T PF08567_consen 9 YKKKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEG-SPKVMLKIVLKDDS--SEESKT 74 (79)
T ss_dssp ETTEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TT-SSTEEEEEEETTSC-----CCC
T ss_pred EEcCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCC-CcceEEEEEEecCC--cccceE
Confidence 38999999999999 9998753333 399999999997766654 46677777777776 444443
No 111
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=58.59 E-value=6.4 Score=48.86 Aligned_cols=7 Identities=0% Similarity=-0.334 Sum_probs=2.8
Q ss_pred EEecCCC
Q 001503 768 VQTLGGG 774 (1065)
Q Consensus 768 ~~~~~~~ 774 (1065)
+.++++.
T Consensus 109 ~~e~s~r 115 (822)
T KOG2141|consen 109 SVEESKR 115 (822)
T ss_pred HHHhccc
Confidence 3344433
No 112
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=58.28 E-value=6.5 Score=51.29 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=27.3
Q ss_pred CCcEEEEeCceeE--------EEEEeecC--CCcceeEEEEEecCC-----CCeEEEecccCCChHH
Q 001503 857 TPFLVVTLGEIEI--------VNLERVGL--GQKNFDMTIVFKDFK-----KDVLRIDSIPSSSLDS 908 (1065)
Q Consensus 857 ~P~~vi~l~eie~--------v~feRv~~--~~k~FD~~~v~kd~~-----~~~~~i~~I~~~~l~~ 908 (1065)
+|...|++-.=.. -++-||.. -+++|++.-.+--+. .-.++|+-.|++++..
T Consensus 1206 TP~mt~pi~~g~s~~ra~~i~~~l~rV~L~evlk~v~vte~~t~~~~~~~~~y~lr~~~~~~~~y~~ 1272 (1640)
T KOG0262|consen 1206 TPSMTVPIKNGVSDERADDITKELRRVTLKEVLKKVGVTEKITMVENQSCKKYKLRFDLLPREEYQE 1272 (1640)
T ss_pred CCceeeeccCCccHHHHHHHHHHHHHHHHHHHHhheeeeEEEEeeccccceEEEEEEeecCHHHhhh
Confidence 5777777643222 11223322 456666655542222 2256788888877765
No 113
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=58.13 E-value=7.9 Score=49.59 Aligned_cols=31 Identities=10% Similarity=0.261 Sum_probs=21.2
Q ss_pred ChHHHHHHhhhcCceeeecccccchHHHhhh
Q 001503 905 SLDSIKEWLDTTDIKYYESRLNLNWRQILKT 935 (1065)
Q Consensus 905 ~l~~ik~wl~~~~i~~~e~~~nlnW~~i~k~ 935 (1065)
..+.+..|....-.+.+|......|..+=..
T Consensus 337 ~~~~~~~F~~~~~~~l~E~~n~~~w~~~k~~ 367 (794)
T PF08553_consen 337 DQEDYERFQEKFMKCLWENLNKMKWSKIKED 367 (794)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCcccCcHH
Confidence 4556666666666668888888899765333
No 114
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=58.09 E-value=6.4 Score=47.28 Aligned_cols=6 Identities=67% Similarity=0.877 Sum_probs=2.6
Q ss_pred cceeee
Q 001503 724 IKHAFF 729 (1065)
Q Consensus 724 Ik~~ff 729 (1065)
|||||.
T Consensus 32 ik~~~v 37 (678)
T KOG0127|consen 32 IKHAVV 37 (678)
T ss_pred cceeEE
Confidence 344443
No 115
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=56.45 E-value=6.5 Score=47.21 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=7.8
Q ss_pred cccceeeeccCCCcc
Q 001503 722 GNIKHAFFQPAEKEM 736 (1065)
Q Consensus 722 ~nIk~~ffqp~~~e~ 736 (1065)
++|...|=||.+...
T Consensus 97 ~~veK~~~q~~~~k~ 111 (678)
T KOG0127|consen 97 KAVEKPIEQKRPTKA 111 (678)
T ss_pred hhhhcccccCCcchh
Confidence 455555555555543
No 116
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=55.55 E-value=7.5 Score=50.76 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=13.7
Q ss_pred ccceeecCCCCCCCCCC-CceEEEEcc
Q 001503 534 TTDLIAYKNVNDLLPPR-DLMIQIDQK 559 (1065)
Q Consensus 534 ~~~~~sY~~~~~~P~~~-~~~i~vD~~ 559 (1065)
.++.++.-=-..||.+. .+.|.--.|
T Consensus 880 ~~~cvP~GLlk~FP~N~mqlM~~SGAK 906 (1640)
T KOG0262|consen 880 VKKCVPDGLLKKFPENNMQLMIQSGAK 906 (1640)
T ss_pred HhhhccchhhhcCCcchHHHHHHhcCC
Confidence 34455555556677764 554443333
No 117
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=55.43 E-value=6.1 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=12.7
Q ss_pred cchHHHhhhhccCccchhccCC
Q 001503 927 LNWRQILKTITDDPQSFIDDGG 948 (1065)
Q Consensus 927 lnW~~i~k~i~~d~~~f~~~gg 948 (1065)
+.|-.=-=||.-+|..=+++||
T Consensus 870 m~WDDSaltItVNPme~~e~~g 891 (952)
T KOG1834|consen 870 MDWDDSALTITVNPMEDYEKGG 891 (952)
T ss_pred CCcccccceEEecchHhcccCC
Confidence 4454444456666766666654
No 118
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=55.35 E-value=5.7 Score=47.71 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=5.3
Q ss_pred ChHHHHHHhhhc
Q 001503 905 SLDSIKEWLDTT 916 (1065)
Q Consensus 905 ~l~~ik~wl~~~ 916 (1065)
.+.+|..=|-+.
T Consensus 116 ~~~nv~srL~n~ 127 (432)
T PF09073_consen 116 ALNNVVSRLFNS 127 (432)
T ss_pred HHHHHHHHHhcc
Confidence 444544444333
No 119
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.94 E-value=7.6 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001503 495 EELRRQHQAELARQKNEETGRRL 517 (1065)
Q Consensus 495 e~~r~~~Q~eL~~~~~~e~~~r~ 517 (1065)
-..||..-++|..+|.++.+++=
T Consensus 49 k~~rrn~akqlr~qk~~~v~e~~ 71 (754)
T KOG1980|consen 49 KLQRRNQAKQLRKQKREDVLENT 71 (754)
T ss_pred HHHHHhHHHHHHHhHHHHHHHhh
Confidence 34455566788888888887663
No 120
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=54.83 E-value=8 Score=44.34 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=11.6
Q ss_pred CCcccceeeceeeeeecccc
Q 001503 568 YGSMVPFHVATIRTVSSQQD 587 (1065)
Q Consensus 568 ~G~~vPfHi~tiKn~s~~~e 587 (1065)
+|..+|+-.+|..---.++|
T Consensus 18 ~g~lL~yg~s~MQGWRvsqE 37 (542)
T KOG0699|consen 18 SGNLLSYGCSTMQGWRVSQE 37 (542)
T ss_pred cCccchhchhhhhccccchh
Confidence 35556666666665555554
No 121
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=54.56 E-value=11 Score=41.48 Aligned_cols=10 Identities=10% Similarity=0.032 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 001503 799 MDFQSFVNRV 808 (1065)
Q Consensus 799 ~~f~~f~~~v 808 (1065)
..+..|...+
T Consensus 56 ~~~~~lr~~~ 65 (233)
T PF11705_consen 56 ALKRELRERM 65 (233)
T ss_pred HHHHHHHHHH
Confidence 3444455555
No 122
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=54.10 E-value=6.6 Score=48.74 Aligned_cols=10 Identities=0% Similarity=0.199 Sum_probs=3.8
Q ss_pred HHHHHHhhhc
Q 001503 907 DSIKEWLDTT 916 (1065)
Q Consensus 907 ~~ik~wl~~~ 916 (1065)
+.+.++....
T Consensus 189 ~~~~~~ke~k 198 (822)
T KOG2141|consen 189 KLLLDFKERK 198 (822)
T ss_pred HhhhhhhHHH
Confidence 3333333333
No 123
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=53.41 E-value=4.4 Score=51.34 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=0.0
Q ss_pred CcEEEEeCceeEEEEEe
Q 001503 858 PFLVVTLGEIEIVNLER 874 (1065)
Q Consensus 858 P~~vi~l~eie~v~feR 874 (1065)
|-|.=.|.+=..+...|
T Consensus 367 ~~L~~kL~eN~~~~~~~ 383 (713)
T PF03344_consen 367 PELARKLEENRKLAQSR 383 (713)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33333344333333333
No 124
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=52.94 E-value=17 Score=47.04 Aligned_cols=44 Identities=32% Similarity=0.428 Sum_probs=24.0
Q ss_pred EEEEeecCCCc---ceeEEEEEecCCCCeEEEecccCCChHHHHHHhh
Q 001503 870 VNLERVGLGQK---NFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLD 914 (1065)
Q Consensus 870 v~feRv~~~~k---~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~ 914 (1065)
++|+|..+--+ .-||-+-|.|+.. -++-++++-..++.-.+=|+
T Consensus 806 ~~fq~Y~~iKk~~~Pld~~~~f~d~~~-~~rp~~k~y~~~ee~~eal~ 852 (1128)
T KOG2051|consen 806 VAFQRYILIKKSQQPLDMEYEFEDFLE-LVRPEMKNYNTLEEADEALD 852 (1128)
T ss_pred HHHHHHhhcccccCCCchhhhHHhhhh-hccccceecccHHHHHHHHH
Confidence 45566555333 4677777777532 34445555555555444443
No 125
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.71 E-value=9.3 Score=49.10 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=15.3
Q ss_pred EEEeecCCCcceeEEEEEec
Q 001503 871 NLERVGLGQKNFDMTIVFKD 890 (1065)
Q Consensus 871 ~feRv~~~~k~FD~~~v~kd 890 (1065)
.+||.|+....|.+.|-++.
T Consensus 809 iLe~~~~~~~ff~~wf~~~~ 828 (1010)
T KOG1991|consen 809 ILENQGFLNNFFTLWFQFIN 828 (1010)
T ss_pred HHHHcCCcccHHHHHHHHHH
Confidence 36788888888888877664
No 126
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=49.82 E-value=7.4 Score=40.72 Aligned_cols=6 Identities=50% Similarity=0.794 Sum_probs=2.6
Q ss_pred HHHHHH
Q 001503 1017 ELEREA 1022 (1065)
Q Consensus 1017 ele~~a 1022 (1065)
+++++.
T Consensus 64 dFeref 69 (170)
T PF04050_consen 64 DFEREF 69 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 127
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=49.43 E-value=8.8 Score=46.98 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=16.4
Q ss_pred eeeccCCCccEEEEEEEcccceee-----CceecceeEEE
Q 001503 727 AFFQPAEKEMITLVHFHLHNHIMV-----GNKKTKDVQFY 761 (1065)
Q Consensus 727 ~ffqp~~~e~~v~~h~~L~~pi~~-----Gkkk~~~vQF~ 761 (1065)
+.+||.+-.+..-=.-||..|--. |..-.||+|.-
T Consensus 616 ~VlQa~eP~islsgt~hf~r~a~~fe~~~gv~lfPdl~It 655 (952)
T KOG1834|consen 616 MVLQAAEPTISLSGTSHFARPAHMFESGNGVALFPDLTIT 655 (952)
T ss_pred EEEccCCCeEEeechhhhccchhhhcccCcceecCceEEE
Confidence 344555443333333445544322 45666666543
No 128
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=48.88 E-value=5.7 Score=50.64 Aligned_cols=10 Identities=0% Similarity=0.258 Sum_probs=0.0
Q ss_pred ceEEEEccce
Q 001503 295 SVIICAVGSR 304 (1065)
Q Consensus 295 dvI~vdlG~~ 304 (1065)
++.+|.+-+.
T Consensus 243 ~LflvE~~~~ 252 (787)
T PF03115_consen 243 PLFLVELRAT 252 (787)
T ss_dssp ----------
T ss_pred ccEEEEEEEE
Confidence 4445554444
No 129
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=46.11 E-value=6.2 Score=47.23 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhh
Q 001503 796 KINMDFQSFVNRVN 809 (1065)
Q Consensus 796 ~ln~~f~~f~~~v~ 809 (1065)
.|+.-...|+.+-.
T Consensus 591 tl~hfldrf~yr~~ 604 (821)
T COG5593 591 TLSHFLDRFVYRSA 604 (821)
T ss_pred hHHHHHHHHHhcCc
Confidence 45555666776663
No 130
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=45.19 E-value=12 Score=41.61 Aligned_cols=7 Identities=43% Similarity=0.539 Sum_probs=3.1
Q ss_pred ChHHHHH
Q 001503 1014 TWAELER 1020 (1065)
Q Consensus 1014 ~wdele~ 1020 (1065)
.--||++
T Consensus 151 Ll~ELek 157 (244)
T PF04889_consen 151 LLRELEK 157 (244)
T ss_pred HHHHHHH
Confidence 3345543
No 131
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=44.64 E-value=1.4e+02 Score=32.94 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCc-cccccCCCCCCCCCCCEEEeCCCCCcCC---
Q 001503 205 VKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTK-AGVKLRAENVDICYPPIFQSGGAFDLRP--- 280 (1065)
Q Consensus 205 ~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k-~~~~~~~~~~~~~y~pIV~SG~~~~l~~--- 280 (1065)
++++..++..+.. ++++.++ ||++-.+|...+...+.+.+. ++. .|+.-+.-|-...++-
T Consensus 121 ~~~~y~~~~~a~~-~~i~~lk------pG~~~~dv~~~a~~~i~~~~~~~~~---------~~~~~~GHgiGle~hE~~~ 184 (243)
T cd01091 121 QQKNYNFLLALQE-EILKELK------PGAKLSDVYQKTLDYIKKKKPELEP---------NFTKNLGFGIGLEFRESSL 184 (243)
T ss_pred HHHHHHHHHHHHH-HHHHHcC------CCCcHHHHHHHHHHHHHHhChhHHH---------hCcCCcccccCcccccCcc
Confidence 4556666667776 7777888 699999999999888875310 110 0111111111111100
Q ss_pred C-ccCCcccccccCcceEEEEccce-e----------CCeEeeeEEEEEEc
Q 001503 281 S-AASNDELLYYDSGSVIICAVGSR-Y----------NSYCSNIARSFLID 319 (1065)
Q Consensus 281 h-~~~~~r~L~~G~~dvI~vdlG~~-y----------~GY~sditRT~~Vg 319 (1065)
. ...++++|++| -++.+..|.. + +.|..-++-|++|.
T Consensus 185 ~l~~~~~~~L~~G--Mvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt 233 (243)
T cd01091 185 IINAKNDRKLKKG--MVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVT 233 (243)
T ss_pred ccCCCCCCCcCCC--CEEEEeCCcccccCccccCccCCeeEEEEEEEEEEc
Confidence 0 11235789999 8999999985 2 36888899999995
No 132
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=43.73 E-value=12 Score=46.67 Aligned_cols=38 Identities=13% Similarity=0.410 Sum_probs=29.4
Q ss_pred EEecccCCChHHHHHHhhhcCceeeecccccchHHHhhhhccCccch
Q 001503 897 RIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSF 943 (1065)
Q Consensus 897 ~i~~I~~~~l~~ik~wl~~~~i~~~e~~~nlnW~~i~k~i~~d~~~f 943 (1065)
..+......|..+|+=|...+=. +...|+.-++||..|
T Consensus 101 kms~~nakaln~lkQklkK~~k~---------~e~~i~~yrenPe~~ 138 (595)
T PF05470_consen 101 KMSKNNAKALNTLKQKLKKYNKE---------YEAQIAKYRENPEAF 138 (595)
T ss_pred hcCHHhHHHHHHHHHHHHhhhhh---------HHHHHHHHHhCCccc
Confidence 45566677899999998887554 356888899999887
No 133
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=43.61 E-value=14 Score=42.37 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=56.6
Q ss_pred cCCcEEEEeCceeEEEEEeecCCCcceeEEEEEecCCCCeEEEecccCCChHHHHHHhhh-cCceeeec---ccccchHH
Q 001503 856 ETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDT-TDIKYYES---RLNLNWRQ 931 (1065)
Q Consensus 856 e~P~~vi~l~eie~v~feRv~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~-~~i~~~e~---~~nlnW~~ 931 (1065)
+.-||.++..||.-++..| +.|-++|.|+.| ++.|+.++..+.++++.||.-+.. .+|....- ...+||+.
T Consensus 34 ~~~pftlp~~Ev~~~~wsr---g~Rgy~lkI~~k--~~~v~~ldgfsQ~d~d~lkn~f~~~F~i~~eqkE~si~gwnwGe 108 (508)
T COG5165 34 ERKPFTLPRNEVKDAEWSR---GVRGYKLKIRVK--GNAVYELDGFSQNDIDELKNIFSEYFRITLEQKELSIAGWNWGE 108 (508)
T ss_pred cCCceeechhHhhHHHHhh---hcccceEEEEEc--CCCceEecCcCHHHHHHHHHHHHHheeeeEEEeeeeeccccccc
Confidence 3457889999999999988 889999999999 899999999999999999987654 34444432 33457764
No 134
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=42.36 E-value=18 Score=48.90 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=8.1
Q ss_pred CCcceeEEEEE
Q 001503 878 GQKNFDMTIVF 888 (1065)
Q Consensus 878 ~~k~FD~~~v~ 888 (1065)
..++-||+++-
T Consensus 123 ~~~~~d~~i~~ 133 (2849)
T PTZ00415 123 EIGDLDMIIIK 133 (2849)
T ss_pred hcCCcceEEee
Confidence 45678998884
No 135
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=41.96 E-value=8.5 Score=39.48 Aligned_cols=6 Identities=0% Similarity=-0.352 Sum_probs=2.3
Q ss_pred eeeeec
Q 001503 841 SAFIVP 846 (1065)
Q Consensus 841 ~~~~~p 846 (1065)
..++.|
T Consensus 17 ~~~f~~ 22 (149)
T PF03066_consen 17 DYTFKV 22 (149)
T ss_dssp EEEE-T
T ss_pred eEEEeC
Confidence 344444
No 136
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.03 E-value=17 Score=46.86 Aligned_cols=13 Identities=23% Similarity=0.003 Sum_probs=8.3
Q ss_pred eecCCCCCCCCCC
Q 001503 538 IAYKNVNDLLPPR 550 (1065)
Q Consensus 538 ~sY~~~~~~P~~~ 550 (1065)
.+..+.+.+|-.|
T Consensus 509 ~~l~~d~~lPV~V 521 (1010)
T KOG1991|consen 509 NCLLNDNELPVRV 521 (1010)
T ss_pred HHhccCCcCchhh
Confidence 4566677777654
No 137
>PF06213 CobT: Cobalamin biosynthesis protein CobT; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised [, ]. Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in P. denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively []. CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) []. Nomenclature note: CobT of the aerobic pathway P. denitrificans is not a homologue of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous.
Probab=39.48 E-value=28 Score=39.42 Aligned_cols=10 Identities=20% Similarity=0.787 Sum_probs=5.1
Q ss_pred hHHHHHHhhh
Q 001503 906 LDSIKEWLDT 915 (1065)
Q Consensus 906 l~~ik~wl~~ 915 (1065)
++....||..
T Consensus 167 ~~~~R~~l~~ 176 (282)
T PF06213_consen 167 VELWRPWLEE 176 (282)
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 138
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=39.05 E-value=1.9e+02 Score=34.34 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCcccc--ccCCCCCCCCCCCEEEeCCCCCcCCC-
Q 001503 205 VKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGV--KLRAENVDICYPPIFQSGGAFDLRPS- 281 (1065)
Q Consensus 205 ~R~Aa~ia~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~--~~~~~~~~~~y~pIV~SG~~~~l~~h- 281 (1065)
++++..++..++. ++++.|+ ||++-.+|...+...+.+.| +.. ..|.+ ++..++|... ... +.
T Consensus 272 ~~~~~~~~~~a~~-~~i~~ik------pG~~~~dv~~~~~~~~~~~G-~~~~h~~Ghg-iGl~~~~~~~--e~~---~~l 337 (391)
T TIGR02993 272 FLDAEKAVLEGME-AGLEAAK------PGNTCEDIANAFFAVLKKYG-IHKDSRTGYP-IGLSYPPDWG--ERT---MSL 337 (391)
T ss_pred HHHHHHHHHHHHH-HHHHHcC------CCCcHHHHHHHHHHHHHHcC-CccCCCceee-eccCcCCCCC--Ccc---ccc
Confidence 5567777777887 7888888 69999999999998887543 111 01111 1111211100 000 11
Q ss_pred ccCCcccccccCcceEEEEccceeCCeEeeeEEEEEEc
Q 001503 282 AASNDELLYYDSGSVIICAVGSRYNSYCSNIARSFLID 319 (1065)
Q Consensus 282 ~~~~~r~L~~G~~dvI~vdlG~~y~GY~sditRT~~Vg 319 (1065)
...++.+|+.| -++.+..|.-..|+..-+.=|++|.
T Consensus 338 ~~~~~~~L~~G--Mv~tvEpgiy~~~~Gvried~v~VT 373 (391)
T TIGR02993 338 RPGDNTVLKPG--MTFHFMTGLWMEDWGLEITESILIT 373 (391)
T ss_pred cCCCCceecCC--CEEEEcceeEeCCCCeEEeeEEEEC
Confidence 12245789998 8889998887777666777888884
No 139
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=37.72 E-value=1.5e+02 Score=31.53 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeeccccccCCccccCCCCccccCC
Q 001503 321 TPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAK 400 (1065)
Q Consensus 321 s~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E~p~~i~~~~~~vLe~G 400 (1065)
.++|+..-..+.+-+.+++...-|..+..+.-+.+...+.+.+ =..++.+. +|- +| ++-.++. +.|
T Consensus 114 ~~e~kaar~~a~~YmaAl~r~F~Ptls~eQs~~kl~~lL~~gk--~~~yy~q~----~GA-iR----YVvad~g---ekg 179 (200)
T PF07305_consen 114 GPEQKAARALAIEYMAALMRQFEPTLSPEQSQEKLQKLLTKGK--GSRYYSQT----EGA-IR----YVVADNG---EKG 179 (200)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHcCC--CCcceeec----cCc-eE----EEEecCC---Cce
Confidence 4778888888888889999999999999999999888888754 22334333 331 01 2223333 479
Q ss_pred cEEEEeec
Q 001503 401 MIFNVSIG 408 (1065)
Q Consensus 401 MVfsIEpg 408 (1065)
++|+|||-
T Consensus 180 lTFAVEPI 187 (200)
T PF07305_consen 180 LTFAVEPI 187 (200)
T ss_pred eEEEeeee
Confidence 99999993
No 140
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.05 E-value=21 Score=37.17 Aligned_cols=6 Identities=50% Similarity=0.750 Sum_probs=2.3
Q ss_pred Eeccee
Q 001503 702 HLNGFR 707 (1065)
Q Consensus 702 h~ng~r 707 (1065)
|+|-|-
T Consensus 16 HqN~f~ 21 (227)
T KOG3241|consen 16 HQNKFA 21 (227)
T ss_pred hcccee
Confidence 333333
No 141
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=35.16 E-value=24 Score=42.41 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=9.4
Q ss_pred EeecCCCcceeEEEEE
Q 001503 873 ERVGLGQKNFDMTIVF 888 (1065)
Q Consensus 873 eRv~~~~k~FD~~~v~ 888 (1065)
|=.+...|.||+.=.|
T Consensus 25 ~g~g~~~r~~D~~~m~ 40 (641)
T KOG0772|consen 25 EGIGSKARVMDLENMF 40 (641)
T ss_pred cccccceeeechhhhh
Confidence 3445566777766544
No 142
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=35.00 E-value=40 Score=40.71 Aligned_cols=9 Identities=11% Similarity=0.523 Sum_probs=5.3
Q ss_pred CceeeeecC
Q 001503 839 KASAFIVPT 847 (1065)
Q Consensus 839 ~~~~~~~pt 847 (1065)
|.+..+||.
T Consensus 611 rg~simqpl 619 (821)
T COG5593 611 RGTSIMQPL 619 (821)
T ss_pred ccchhhhhh
Confidence 445566665
No 143
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=34.51 E-value=61 Score=37.46 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=40.3
Q ss_pred eecCCCCCCCCC-C-CceEEEEccCCEE----EEeeCCcccceeeceeeeeeccccCCCce----EEEEEeecCC
Q 001503 538 IAYKNVNDLLPP-R-DLMIQIDQKNEAV----LFPIYGSMVPFHVATIRTVSSQQDTNRNC----YIRIIFNVPG 602 (1065)
Q Consensus 538 ~sY~~~~~~P~~-~-~~~i~vD~~~~~v----ilPi~G~~vPfHi~tiKn~s~~~e~~~~~----~lrinF~~pg 602 (1065)
.+|.-+.+.|.. + .|++-|=...+.+ ---||+.+=|+||+.| |.+.+ ++.- +||||++.|.
T Consensus 123 ~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI---S~NsD-~Et~lSADdLRINLWnle 193 (433)
T KOG1354|consen 123 EGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI---SVNSD-KETFLSADDLRINLWNLE 193 (433)
T ss_pred ccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee---eecCc-cceEeeccceeeeecccc
Confidence 556655555654 4 7777665555444 4458999999999876 44443 3221 7999999995
No 144
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=34.33 E-value=32 Score=37.79 Aligned_cols=16 Identities=0% Similarity=-0.014 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 001503 793 RKNKINMDFQSFVNRV 808 (1065)
Q Consensus 793 ~~~~ln~~f~~f~~~v 808 (1065)
+.-.+...|..+++.-
T Consensus 53 ~~v~~~~~lr~~~~~s 68 (233)
T PF11705_consen 53 YLVALKRELRERMRDS 68 (233)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3344555566666655
No 145
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=33.48 E-value=24 Score=42.38 Aligned_cols=7 Identities=0% Similarity=0.287 Sum_probs=3.2
Q ss_pred EEEeecC
Q 001503 871 NLERVGL 877 (1065)
Q Consensus 871 ~feRv~~ 877 (1065)
..|++++
T Consensus 43 ti~~~~~ 49 (641)
T KOG0772|consen 43 TISDLQF 49 (641)
T ss_pred hhhhccc
Confidence 3445444
No 146
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=32.56 E-value=44 Score=40.30 Aligned_cols=12 Identities=8% Similarity=-0.249 Sum_probs=5.4
Q ss_pred cCCCccEEEEEE
Q 001503 731 PAEKEMITLVHF 742 (1065)
Q Consensus 731 p~~~e~~v~~h~ 742 (1065)
....+..+.|.+
T Consensus 294 ~~~~e~~i~f~~ 305 (436)
T PF03985_consen 294 SKGYEENIFFVD 305 (436)
T ss_pred CCCccceEEEEe
Confidence 334444444444
No 147
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.53 E-value=76 Score=35.03 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=5.3
Q ss_pred hhcCCCCCCCCC
Q 001503 1041 RRKGKTFGKSRG 1052 (1065)
Q Consensus 1041 ~~~~~~~~~~~~ 1052 (1065)
|+|++.++.+.+
T Consensus 278 krr~~~a~~s~s 289 (306)
T KOG2985|consen 278 KRRNKVAASSDS 289 (306)
T ss_pred HHhhcccccCCC
Confidence 444444444443
No 148
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=32.08 E-value=33 Score=40.86 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.6
Q ss_pred EEEEeec
Q 001503 870 VNLERVG 876 (1065)
Q Consensus 870 v~feRv~ 876 (1065)
.||||.-
T Consensus 138 fh~ermD 144 (615)
T KOG3540|consen 138 FHQERMD 144 (615)
T ss_pred hhccccc
Confidence 3556553
No 149
>PF06213 CobT: Cobalamin biosynthesis protein CobT; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised [, ]. Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in P. denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively []. CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) []. Nomenclature note: CobT of the aerobic pathway P. denitrificans is not a homologue of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous.
Probab=31.16 E-value=50 Score=37.41 Aligned_cols=6 Identities=33% Similarity=0.960 Sum_probs=2.3
Q ss_pred hHHHHH
Q 001503 906 LDSIKE 911 (1065)
Q Consensus 906 l~~ik~ 911 (1065)
|+.|..
T Consensus 182 L~~L~~ 187 (282)
T PF06213_consen 182 LDGLRD 187 (282)
T ss_pred HHHHHH
Confidence 333333
No 150
>PRK13607 proline dipeptidase; Provisional
Probab=30.84 E-value=2.2e+02 Score=34.45 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCCCCcceeecccccc-CCccccCCCCccccCCc
Q 001503 323 LQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRE-SGLNLNAKNDRVVKAKM 401 (1065)
Q Consensus 323 eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~h~~GHgIGle~~E-~p~~i~~~~~~vLe~GM 401 (1065)
.++++-.++.+++.+++++++||++-.+|........ ..++. ...|+ .-++...+- .|. -.+.+..++++|.
T Consensus 169 ~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~~-~~~y~----~iva~G~naa~~H-~~~~~~~~~~~Gd 241 (443)
T PRK13607 169 CMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRDN-DVPYG----NIVALNEHAAVLH-YTKLDHQAPAEMR 241 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCCc-CCCCC----cEEEecCcceEec-CCccCCCCCCCCC
Confidence 4567777888889999999999999999987543221 22210 01111 112211110 011 1123335689999
Q ss_pred EEEEeeccccccCCCCCCCCCeeEEEEEEEEE
Q 001503 402 IFNVSIGFQNLQNQTNKPKNQMFSLLLADTVI 433 (1065)
Q Consensus 402 VfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVl 433 (1065)
++.|..|.. + .+|..-+.=|+.
T Consensus 242 ~vliD~Ga~-~---------~GY~sDiTRTf~ 263 (443)
T PRK13607 242 SFLIDAGAE-Y---------NGYAADITRTYA 263 (443)
T ss_pred EEEEEeeEE-E---------CCEEecceEEEe
Confidence 999998865 2 337666777766
No 151
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=30.62 E-value=40 Score=38.77 Aligned_cols=9 Identities=11% Similarity=0.136 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 001503 641 IKTLRRQVM 649 (1065)
Q Consensus 641 I~~l~k~~~ 649 (1065)
+++||+-+.
T Consensus 36 L~eLk~lWe 44 (348)
T KOG2652|consen 36 LSELKNLWE 44 (348)
T ss_pred HHHHHHHHH
Confidence 455555553
No 152
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=29.59 E-value=34 Score=42.37 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=5.2
Q ss_pred HHHhhhcCceee
Q 001503 910 KEWLDTTDIKYY 921 (1065)
Q Consensus 910 k~wl~~~~i~~~ 921 (1065)
-+|...+-=.||
T Consensus 484 LqF~~NrRP~Yy 495 (811)
T KOG4364|consen 484 LQFDKNRRPGYY 495 (811)
T ss_pred hhhccccCCccc
Confidence 344444444444
No 153
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=29.32 E-value=45 Score=40.49 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=13.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001503 779 YDPDEIEEEQRERARKNKINMDFQSFV 805 (1065)
Q Consensus 779 ~d~de~~~eq~e~~~~~~ln~~f~~f~ 805 (1065)
++.+|.+++- .++.+.+|..|....
T Consensus 174 L~~EEaee~~--~~r~k~~Nt~~s~m~ 198 (555)
T KOG2393|consen 174 LTAEEAEEWF--MERFKVMNTWFSLME 198 (555)
T ss_pred ccHHHHHHHH--HHhhhhHHHHHHHHH
Confidence 4556665432 245566775665443
No 154
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.11 E-value=27 Score=43.11 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccceeecCCCC
Q 001503 639 GAIKTLRRQVMARESERAERATLVTQEKLQLAGNRF 674 (1065)
Q Consensus 639 ~~I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~ 674 (1065)
+++.-++++-......++.++++.+|-++-..+|..
T Consensus 45 ~~~sk~~rrn~akqlr~qk~~~v~e~~~~~~g~n~a 80 (754)
T KOG1980|consen 45 KTVSKLQRRNQAKQLRKQKREDVLENTRLLGGQNGA 80 (754)
T ss_pred hhhhHHHHHhHHHHHHHhHHHHHHHhhhhccccccc
Confidence 455555555444444555566666665555555543
No 155
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=28.96 E-value=40 Score=38.77 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=6.2
Q ss_pred CcEEEEeCceeEEEE
Q 001503 858 PFLVVTLGEIEIVNL 872 (1065)
Q Consensus 858 P~~vi~l~eie~v~f 872 (1065)
|...-+=++++-+.+
T Consensus 202 ~q~~~s~nd~~~~~~ 216 (348)
T KOG2652|consen 202 PQVDGSENDVEQIDG 216 (348)
T ss_pred ccccccccccccccc
Confidence 333334444444443
No 156
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=28.61 E-value=36 Score=41.57 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=7.7
Q ss_pred cccCCcEEEEeeccc
Q 001503 396 VVKAKMIFNVSIGFQ 410 (1065)
Q Consensus 396 vLe~GMVfsIEpg~~ 410 (1065)
.|..+|.++-.||.-
T Consensus 212 ~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGD 226 (703)
T ss_pred eeecccccCCCcccc
Confidence 355555555555543
No 157
>PF05477 SURF2: Surfeit locus protein 2 (SURF2); InterPro: IPR008833 Surfeit locus protein 2 is part of a group of at least six sequence unrelated genes (Surf-1 to Surf-6). The six Surfeit genes have been classified as housekeeping genes, being expressed in all tissue types tested and not containing a TATA box in their promoter region. The exact function of SURF2 is unknown [].
Probab=27.89 E-value=1e+02 Score=34.38 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=13.6
Q ss_pred eeccCCCCCCccCC---ceEEEEecceeee
Q 001503 683 WIRPVFGGRGRKIP---GTLEAHLNGFRFA 709 (1065)
Q Consensus 683 ~~rP~~~g~~kr~~---G~le~h~ng~r~~ 709 (1065)
-||.+++| --++ -.|+.|.+|=+|.
T Consensus 25 rvrC~lTG--HEmp~~~~~l~~y~~gKKy~ 52 (244)
T PF05477_consen 25 RVRCTLTG--HEMPCRLDELQQYIRGKKYQ 52 (244)
T ss_pred eEEEeecC--cccCCCHHHHHHHhccHHHH
Confidence 45555555 3332 3456677776664
No 158
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=27.49 E-value=45 Score=39.74 Aligned_cols=7 Identities=0% Similarity=0.192 Sum_probs=2.8
Q ss_pred ccceeeC
Q 001503 745 HNHIMVG 751 (1065)
Q Consensus 745 ~~pi~~G 751 (1065)
.-|.+-|
T Consensus 46 ~~P~l~a 52 (620)
T COG4547 46 DRPVLRA 52 (620)
T ss_pred cCcceec
Confidence 3344433
No 159
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=26.40 E-value=64 Score=42.23 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=11.3
Q ss_pred CCcHHHHHHHHHHhh
Q 001503 163 TPEGRLLETWADRLQ 177 (1065)
Q Consensus 163 ~~~g~~~~~l~~~l~ 177 (1065)
.++..|..+|.++|+
T Consensus 99 ~Fs~~~lg~~~k~l~ 113 (1128)
T KOG2051|consen 99 RFSTAFLGAFLKALE 113 (1128)
T ss_pred cccHHHHHHHHHhcC
Confidence 466778888888886
No 160
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=24.72 E-value=64 Score=38.89 Aligned_cols=9 Identities=11% Similarity=0.486 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001503 640 AIKTLRRQV 648 (1065)
Q Consensus 640 ~I~~l~k~~ 648 (1065)
+|+.+.+.|
T Consensus 157 qi~~Ie~tF 165 (436)
T PF03985_consen 157 QIRAIEKTF 165 (436)
T ss_pred HHHHHHHHH
Confidence 333333333
No 161
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=24.34 E-value=68 Score=37.34 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=14.4
Q ss_pred ccEEEEEEEcccceeeCceecceeEE
Q 001503 735 EMITLVHFHLHNHIMVGNKKTKDVQF 760 (1065)
Q Consensus 735 e~~v~~h~~L~~pi~~Gkkk~~~vQF 760 (1065)
..-+.|||. .||-.-.+.=++.++|
T Consensus 143 gf~I~F~F~-~NpyF~N~vLtK~y~~ 167 (337)
T PTZ00007 143 GFILVFTFA-PNPFFSNTVLTKTYHM 167 (337)
T ss_pred ceEEEEEeC-CCCCCCCCeEEEEEEe
Confidence 355555554 5677766665555543
No 162
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=24.25 E-value=21 Score=41.93 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=5.6
Q ss_pred CCEEEEeeCC
Q 001503 560 NEAVLFPIYG 569 (1065)
Q Consensus 560 ~~~vilPi~G 569 (1065)
+.-+|+-|+|
T Consensus 141 ~RG~i~~inG 150 (520)
T KOG2270|consen 141 NRGVIVEING 150 (520)
T ss_pred hcCeeeeccc
Confidence 3455566666
No 163
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.92 E-value=44 Score=39.08 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001503 633 HIGEVVGAIKTLRRQVMARE 652 (1065)
Q Consensus 633 ~~~~~~~~I~~l~k~~~~re 652 (1065)
++..+-++|++|+|.++.-+
T Consensus 91 R~~~~r~q~~~l~~~~~n~~ 110 (514)
T KOG3130|consen 91 RKEHVRKQIDDLKKVMKNFE 110 (514)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 56666677777777776543
No 164
>PF04006 Mpp10: Mpp10 protein; InterPro: IPR007151 This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites [].
Probab=23.54 E-value=85 Score=39.52 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=8.7
Q ss_pred ChHHHHHHHHHhhh
Q 001503 1014 TWAELEREATNADR 1027 (1065)
Q Consensus 1014 ~wdele~~a~~~d~ 1027 (1065)
+.+++++.....++
T Consensus 190 sidEfnk~~e~~E~ 203 (600)
T PF04006_consen 190 SIDEFNKQLEEEER 203 (600)
T ss_pred CHHHHHHHHHHHHH
Confidence 57777776655444
No 165
>PF14470 bPH_3: Bacterial PH domain
Probab=22.93 E-value=3e+02 Score=25.04 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=47.4
Q ss_pred CceeeeecCcccceeeccC-----CcEEEEeCceeEEEEEeecCCCcceeEEEEEecCCCCeEEEecccCCChHHHHHHh
Q 001503 839 KASAFIVPTSSCLVELIET-----PFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWL 913 (1065)
Q Consensus 839 ~~~~~~~pt~~clv~l~e~-----P~~vi~l~eie~v~feRv~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl 913 (1065)
...+.+.-|.+=|+.+.-. .+..++|++|..|++..--++ .. +.|.+ +...++|.+|+..+++.+-+.+
T Consensus 21 ~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~-~~--i~i~~---~~~~~~i~~i~k~~~~~~~~~i 94 (96)
T PF14470_consen 21 SFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILG-GK--ITIET---NGEKIKIDNIQKGDVKEFYEYI 94 (96)
T ss_pred CceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccc-cE--EEEEE---CCEEEEEEEcCHHHHHHHHHHH
Confidence 3455566665555555433 367899999999999852222 22 33333 6778999999999998888776
Q ss_pred h
Q 001503 914 D 914 (1065)
Q Consensus 914 ~ 914 (1065)
+
T Consensus 95 ~ 95 (96)
T PF14470_consen 95 K 95 (96)
T ss_pred h
Confidence 5
No 166
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=22.57 E-value=54 Score=41.30 Aligned_cols=55 Identities=33% Similarity=0.252 Sum_probs=0.0
Q ss_pred hccCCccccccccCCCCCcCCccccCCCCCCCcCcCCCCCcCCCCccccccccccccccCCccchhhc
Q 001503 944 IDDGGWEFLNLEASDSESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSEEEK 1011 (1065)
Q Consensus 944 ~~~ggw~fl~~~~~~~~~~~~e~~d~~~e~s~~e~~~e~~~~~~~~d~~~~~~~~~~e~~~~~~~~~~ 1011 (1065)
|.+|+|. .+|+..+.+.-..++.+..++++|+++..++.+++--|++++.++++.
T Consensus 315 ~ddgk~l-------------~~ED~~e~~~~~~~d~dg~~d~gD~~~~ed~~e~~~~edE~e~e~~~~ 369 (823)
T KOG2147|consen 315 FDDGKGL-------------EEEDTVEKSSILEEDLDGEDDSGDDEDGEDEEEDDLLEDEEELEEEEA 369 (823)
T ss_pred ccccccc-------------ccccchhhccccccCcccccccCcccccccccccccccchhhhcchHH
No 167
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.55 E-value=58 Score=38.14 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=5.6
Q ss_pred EEEEeeCCc
Q 001503 562 AVLFPIYGS 570 (1065)
Q Consensus 562 ~vilPi~G~ 570 (1065)
-|++||+-.
T Consensus 46 ~Imvpig~~ 54 (514)
T KOG3130|consen 46 NIMVPIGPF 54 (514)
T ss_pred ceeeecccc
Confidence 467787643
No 168
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=21.35 E-value=1.1e+02 Score=37.27 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=29.7
Q ss_pred ceeeeecCcccceeeccC--CcEEEEeCcee-EEEEEeecC-CCcceeE---EEEEe
Q 001503 840 ASAFIVPTSSCLVELIET--PFLVVTLGEIE-IVNLERVGL-GQKNFDM---TIVFK 889 (1065)
Q Consensus 840 ~~~~~~pt~~clv~l~e~--P~~vi~l~eie-~v~feRv~~-~~k~FD~---~~v~k 889 (1065)
+.+||.--.+.-|.+.+. -.|.|+++-=+ ..+|+-|-. ..-.||. +||+-
T Consensus 245 ~e~Filq~p~Vkv~i~d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~~~tFvwn 301 (776)
T COG5167 245 TERFILQKPHVKVVIVDDGKEVFWIRIETRDDVILFEEVRTETNPYFDQKNTTFVWN 301 (776)
T ss_pred hheeeecCCceEEEEEecCCeEEEEEEecccceeehheeccccCcceecccceeeee
Confidence 344444334444444444 67777777766 778888865 5555664 56664
No 169
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.26 E-value=88 Score=39.87 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred ccccCCCCCcCCccccCCCCCCCcCcCCCCCcCCCCccccccccccccccCCccchhhccCC
Q 001503 953 NLEASDSESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSEEEKGKT 1014 (1065)
Q Consensus 953 ~~~~~~~~~~~~e~~d~~~e~s~~e~~~e~~~~~~~~d~~~~~~~~~~e~~~~~~~~~~g~~ 1014 (1065)
..+.+.++++.+..+++.|..+.+|..+..++.+...|+++.+..+..+.+|.. ++++++.
T Consensus 650 ~~~~~~s~~~ses~~~~~~~~e~ge~~dsn~~~~~~~d~sdqss~~~ss~~d~~-s~se~e~ 710 (968)
T KOG1060|consen 650 GDDESWSDPESESGESSNFSREGGEENDSNEEKDSEDDFSDQSSYEESSAEDSE-SSSEAES 710 (968)
T ss_pred ccccCCCCCccccccCCcccccccccccccccccccccccccchhccccccccc-ccccccc
No 170
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=20.42 E-value=25 Score=41.41 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.4
Q ss_pred CcEEEE
Q 001503 400 KMIFNV 405 (1065)
Q Consensus 400 GMVfsI 405 (1065)
|+...|
T Consensus 143 G~i~~i 148 (520)
T KOG2270|consen 143 GVIVEI 148 (520)
T ss_pred Ceeeec
Confidence 444333
Done!