BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001504
(1065 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 173/338 (51%), Gaps = 21/338 (6%)
Query: 274 PRPLESNVVLDVHHIA---CGVRHAALVTRQG-EVFTWGEESGGRLGHGVGKDIVQPHLL 329
P P + + LD H I CG H ++ G EV++WG GRLGHG D+ P +
Sbjct: 57 PSPTQLSA-LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPI 115
Query: 330 ESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEG 389
++L + + CG+ H AVTM GE+ +WG + G LG G +P++I EG
Sbjct: 116 KALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFEG 172
Query: 390 LQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVAC 449
+++ V G HTA +T G L+ +G G +G LG GDR + P V S G + VAC
Sbjct: 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 232
Query: 450 GVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHK 509
G HT +V SG L+T+G +LGHGD E L P + AL + +
Sbjct: 233 GWRHTISVS-----------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQ 281
Query: 510 VACGHSLTVGLTTSGHVFTMGSTVYGQLG-NPNADGKLPCLVEDKLAGESVEEIACGAYH 568
++ G T+ LT+ G ++ G +GQ+G N D P V + V +++CG H
Sbjct: 282 ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVSCGWRH 340
Query: 569 VAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEAL 606
+T RN V+ WG+G NG+LG G+ DR P ++EAL
Sbjct: 341 TLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 15/338 (4%)
Query: 288 IACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHT 347
I+ G H+ + V +WG G+LGHG +D P L +L + VTCG HT
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 348 CAVTMAG-ELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALIT 406
A + +G E+Y+WG G + G LGHG + P I L G+++ + CG H +T
Sbjct: 81 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 137
Query: 407 STGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSS 466
G++ ++G G LG GD ++ P+++++ G+R VA G HTAAV E
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 190
Query: 467 ASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHV 526
G L+ WG G LG GD+ RL P V + VACG T+ ++ SG +
Sbjct: 191 ----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGAL 246
Query: 527 FTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGAN 586
+T G + YGQLG+ + + L + L+ + +I+ G H LTS ++Y WG
Sbjct: 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 306
Query: 587 GRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAI 624
G++G G+ D+ +P V D+ V ++CG ++ A+
Sbjct: 307 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 149/300 (49%), Gaps = 19/300 (6%)
Query: 266 GTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQ 325
G +D+ P P+++ + + IACG H VT +GEV +WG G+LG G +D +
Sbjct: 104 GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV 163
Query: 326 PHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISG 385
P +++ + V G HT AVT G+LY WG G + G LG G +P+R++
Sbjct: 164 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRY--GNLGLGDRTDRLVPERVT- 220
Query: 386 PLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTI 445
G +++ V CG HT ++ +G L+T+G +G LGHGD ++ P ++E+LS
Sbjct: 221 STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFIS 280
Query: 446 AVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDY 505
++ G HT A+ S GKL+ WG ++G G+ + P V D
Sbjct: 281 QISGGWRHTMAL-----------TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ 329
Query: 506 NFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLG-NPNADGKLPCLVE----DKLAGESVE 560
+V+CG T+ +T +VF G GQLG + D P ++E D +G+ +E
Sbjct: 330 KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIE 389
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 16/245 (6%)
Query: 391 QVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACG 450
+V ++ G H+ + S + ++G G G LGHGD ++ P ++ +L G + ++V CG
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 76
Query: 451 VWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKV 510
HT A S S ++++WG GD RLGHG+ P + AL ++
Sbjct: 77 ADHTVAY----------SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQI 126
Query: 511 ACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVA 570
ACG S + +T G V + G GQLG + + L G ++ +A GA H A
Sbjct: 127 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 186
Query: 571 VLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACG------SNYSAAI 624
+T ++Y WG G G LG GD DR P V + + +ACG +YS A+
Sbjct: 187 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGAL 246
Query: 625 CLHKW 629
+ W
Sbjct: 247 YTYGW 251
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 14/238 (5%)
Query: 265 LGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIV 324
LG D L+P+ +++ + + +A G H A VT G+++ WG G LG G D +
Sbjct: 155 LGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL 214
Query: 325 QPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIS 384
P + S + V CG HT +V+ +G LYT+G + G LGHG H IP ++
Sbjct: 215 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY--GQLGHGDLEDHLIPHKLE 272
Query: 385 GPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRT 444
L ++ ++ G HT +TS G+L+ +G FG +G G+ + P +V +
Sbjct: 273 -ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 331
Query: 445 IAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL 502
+ V+CG HT AV E +F WG G +LG G+ R P + AL
Sbjct: 332 VQVSCGWRHTLAVTE-----------RNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 13/201 (6%)
Query: 240 GDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT 299
GD+Y WG N+ LG R D L+P + S + +ACG RH V+
Sbjct: 192 GDLYGWGWGRYGNL----------GLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS 241
Query: 300 RQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTW 359
G ++T+G G+LGHG +D + PH LE+L+ + + ++ G HT A+T G+LY W
Sbjct: 242 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGW 301
Query: 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTF 419
G + G +G G ++ P ++ P + +V V+CG HT +T +F +G GT
Sbjct: 302 --GWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358
Query: 420 GVLGHGDRKNVSYPREVESLS 440
G LG G+ + ++P+ +E+LS
Sbjct: 359 GQLGIGESVDRNFPKIIEALS 379
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 510 VACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYH- 568
++ G S +V L + V + G GQLG+ +A+ + L G + + CGA H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 569 VAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAICLHK 628
VA S EVY+WG G GRLGHG+ D TP ++AL +K IACG ++ A+ +
Sbjct: 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 140
Query: 629 WVSS 632
V S
Sbjct: 141 EVQS 144
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 173/338 (51%), Gaps = 21/338 (6%)
Query: 274 PRPLESNVVLDVHHIA---CGVRHAALVTRQG-EVFTWGEESGGRLGHGVGKDIVQPHLL 329
P P + + LD H I CG H ++ G EV++WG GRLGHG D+ P +
Sbjct: 45 PSPTQLSA-LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPI 103
Query: 330 ESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEG 389
++L + + CG+ H AVTM GE+ +WG + G LG G +P++I EG
Sbjct: 104 KALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFEG 160
Query: 390 LQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVAC 449
+++ V G HTA +T G L+ +G G +G LG GDR + P V S G + VAC
Sbjct: 161 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 450 GVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHK 509
G HT +V SG L+T+G +LGHGD E L P + AL + +
Sbjct: 221 GWRHTISVS-----------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQ 269
Query: 510 VACGHSLTVGLTTSGHVFTMGSTVYGQLG-NPNADGKLPCLVEDKLAGESVEEIACGAYH 568
++ G T+ LT+ G ++ G +GQ+G N D P V + V +++CG H
Sbjct: 270 ISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVSCGWRH 328
Query: 569 VAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEAL 606
+T RN V+ WG+G NG+LG G+ DR P ++EAL
Sbjct: 329 TLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 15/338 (4%)
Query: 288 IACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHT 347
I+ G H+ + V +WG G+LGHG +D P L +L + VTCG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 348 CAVTMAG-ELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALIT 406
A + +G E+Y+WG G + G LGHG + P I L G+++ + CG H +T
Sbjct: 69 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 407 STGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSS 466
G++ ++G G LG GD ++ P+++++ G+R VA G HTAAV E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 467 ASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHV 526
G L+ WG G LG GD+ RL P V + VACG T+ ++ SG +
Sbjct: 179 ----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGAL 234
Query: 527 FTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGAN 586
+T G + YGQLG+ + + L + L+ + +I+ G H LTS ++Y WG
Sbjct: 235 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKF 294
Query: 587 GRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAI 624
G++G G+ D+ +P V D+ V ++CG ++ A+
Sbjct: 295 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 15/287 (5%)
Query: 266 GTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQ 325
G +D+ P P+++ + + IACG H VT +GEV +WG G+LG G +D +
Sbjct: 92 GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV 151
Query: 326 PHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISG 385
P +++ + V G HT AVT G+LY WG G + G LG G +P+R++
Sbjct: 152 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRY--GNLGLGDRTDRLVPERVT- 208
Query: 386 PLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTI 445
G +++ V CG HT ++ +G L+T+G +G LGHGD ++ P ++E+LS
Sbjct: 209 STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFIS 268
Query: 446 AVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDY 505
++ G HT A+ S GKL+ WG ++G G+ + P V D
Sbjct: 269 QISGGFRHTMAL-----------TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ 317
Query: 506 NFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLG-NPNADGKLPCLVE 551
+V+CG T+ +T +VF G GQLG + D P ++E
Sbjct: 318 KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 364
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 16/245 (6%)
Query: 391 QVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACG 450
+V ++ G H+ + S + ++G G G LGHGD ++ P ++ +L G + ++V CG
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 451 VWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKV 510
HT A S S ++++WG GD RLGHG+ P + AL ++
Sbjct: 65 ADHTVAY----------SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQI 114
Query: 511 ACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVA 570
ACG S + +T G V + G GQLG + + L G ++ +A GA H A
Sbjct: 115 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 174
Query: 571 VLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACG------SNYSAAI 624
+T ++Y WG G G LG GD DR P V + + +ACG +YS A+
Sbjct: 175 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGAL 234
Query: 625 CLHKW 629
+ W
Sbjct: 235 YTYGW 239
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 14/238 (5%)
Query: 265 LGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIV 324
LG D L+P+ +++ + + +A G H A VT G+++ WG G LG G D +
Sbjct: 143 LGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL 202
Query: 325 QPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIS 384
P + S + V CG HT +V+ +G LYT+G + G LGHG H IP ++
Sbjct: 203 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY--GQLGHGDLEDHLIPHKLE 260
Query: 385 GPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRT 444
L ++ ++ G HT +TS G+L+ +G FG +G G+ + P +V +
Sbjct: 261 -ALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 319
Query: 445 IAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL 502
+ V+CG HT AV E +F WG G +LG G+ R P + AL
Sbjct: 320 VQVSCGWRHTLAVTE-----------RNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 13/201 (6%)
Query: 240 GDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT 299
GD+Y WG N+ LG R D L+P + S + +ACG RH V+
Sbjct: 180 GDLYGWGWGRYGNLG----------LGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS 229
Query: 300 RQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTW 359
G ++T+G G+LGHG +D + PH LE+L+ + + ++ G HT A+T G+LY W
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGW 289
Query: 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTF 419
G + G +G G ++ P ++ P + +V V+CG HT +T +F +G GT
Sbjct: 290 --GWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 420 GVLGHGDRKNVSYPREVESLS 440
G LG G+ + ++P+ +E+LS
Sbjct: 347 GQLGIGESVDRNFPKIIEALS 367
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 510 VACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYH- 568
++ G S +V L + V + G GQLG+ +A+ + L G + + CGA H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 569 VAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAICLHK 628
VA S EVY+WG G GRLGHG+ D TP ++AL +K IACG ++ A+ +
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 128
Query: 629 WVSS 632
V S
Sbjct: 129 EVQS 132
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 240 GDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT 299
G +Y WG + + G N++ + V + P + VV ++CG RH VT
Sbjct: 284 GKLYGWG---WNKFGQVGVGNNLDQC---SPVQVRFPDDQKVV----QVSCGWRHTLAVT 333
Query: 300 RQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTM 334
+ VF WG + G+LG G D P ++E+L++
Sbjct: 334 ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV 368
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 173/338 (51%), Gaps = 21/338 (6%)
Query: 274 PRPLESNVVLDVHHIA---CGVRHAALVTRQG-EVFTWGEESGGRLGHGVGKDIVQPHLL 329
P P + + LD H I CG H ++ G EV++WG GRLGHG D+ P +
Sbjct: 45 PSPTQLSA-LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPI 103
Query: 330 ESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEG 389
++L + + CG+ H AVTM GE+ +WG + G LG G +P++I EG
Sbjct: 104 KALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFEG 160
Query: 390 LQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVAC 449
+++ V G HTA +T G L+ +G G +G LG GDR + P V S G + VAC
Sbjct: 161 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 220
Query: 450 GVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHK 509
G HT +V SG L+T+G +LGHGD E L P + AL + +
Sbjct: 221 GWRHTISVS-----------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQ 269
Query: 510 VACGHSLTVGLTTSGHVFTMGSTVYGQLG-NPNADGKLPCLVEDKLAGESVEEIACGAYH 568
++ G T+ LT+ G ++ G +GQ+G N D P V + V +++CG H
Sbjct: 270 ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVSCGWRH 328
Query: 569 VAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEAL 606
+T RN V+ WG+G NG+LG G+ DR P ++EAL
Sbjct: 329 TLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 15/338 (4%)
Query: 288 IACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHT 347
I+ G H+ + V +WG G+LGHG +D P L +L + VTCG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 348 CAVTMAG-ELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALIT 406
A + +G E+Y+WG G + G LGHG + P I L G+++ + CG H +T
Sbjct: 69 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 407 STGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSS 466
G++ ++G G LG GD ++ P+++++ G+R VA G HTAAV E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 467 ASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHV 526
G L+ WG G LG GD+ RL P V + VACG T+ ++ SG +
Sbjct: 179 ----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGAL 234
Query: 527 FTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGAN 586
+T G + YGQLG+ + + L + L+ + +I+ G H LTS ++Y WG
Sbjct: 235 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 294
Query: 587 GRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAI 624
G++G G+ D+ +P V D+ V ++CG ++ A+
Sbjct: 295 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 15/287 (5%)
Query: 266 GTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQ 325
G +D+ P P+++ + + IACG H VT +GEV +WG G+LG G +D +
Sbjct: 92 GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV 151
Query: 326 PHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISG 385
P +++ + V G HT AVT G+LY WG G + G LG G +P+R++
Sbjct: 152 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRY--GNLGLGDRTDRLVPERVT- 208
Query: 386 PLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTI 445
G +++ V CG HT ++ +G L+T+G +G LGHGD ++ P ++E+LS
Sbjct: 209 STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFIS 268
Query: 446 AVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDY 505
++ G HT A+ S GKL+ WG ++G G+ + P V D
Sbjct: 269 QISGGWRHTMAL-----------TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ 317
Query: 506 NFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLG-NPNADGKLPCLVE 551
+V+CG T+ +T +VF G GQLG + D P ++E
Sbjct: 318 KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 364
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 16/245 (6%)
Query: 391 QVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACG 450
+V ++ G H+ + S + ++G G G LGHGD ++ P ++ +L G + ++V CG
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 451 VWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKV 510
HT A S S ++++WG GD RLGHG+ P + AL ++
Sbjct: 65 ADHTVAY----------SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQI 114
Query: 511 ACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVA 570
ACG S + +T G V + G GQLG + + L G ++ +A GA H A
Sbjct: 115 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 174
Query: 571 VLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACG------SNYSAAI 624
+T ++Y WG G G LG GD DR P V + + +ACG +YS A+
Sbjct: 175 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGAL 234
Query: 625 CLHKW 629
+ W
Sbjct: 235 YTYGW 239
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 14/238 (5%)
Query: 265 LGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIV 324
LG D L+P+ +++ + + +A G H A VT G+++ WG G LG G D +
Sbjct: 143 LGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL 202
Query: 325 QPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIS 384
P + S + V CG HT +V+ +G LYT+G + G LGHG H IP ++
Sbjct: 203 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY--GQLGHGDLEDHLIPHKLE 260
Query: 385 GPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRT 444
L ++ ++ G HT +TS G+L+ +G FG +G G+ + P +V +
Sbjct: 261 -ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 319
Query: 445 IAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL 502
+ V+CG HT AV E +F WG G +LG G+ R P + AL
Sbjct: 320 VQVSCGWRHTLAVTE-----------RNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 13/201 (6%)
Query: 240 GDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT 299
GD+Y WG N+ LG R D L+P + S + +ACG RH V+
Sbjct: 180 GDLYGWGWGRYGNLG----------LGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS 229
Query: 300 RQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTW 359
G ++T+G G+LGHG +D + PH LE+L+ + + ++ G HT A+T G+LY W
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGW 289
Query: 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTF 419
G + G +G G ++ P ++ P + +V V+CG HT +T +F +G GT
Sbjct: 290 --GWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 420 GVLGHGDRKNVSYPREVESLS 440
G LG G+ + ++P+ +E+LS
Sbjct: 347 GQLGIGESVDRNFPKIIEALS 367
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 510 VACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYH- 568
++ G S +V L + V + G GQLG+ +A+ + L G + + CGA H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 569 VAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAICLHK 628
VA S EVY+WG G GRLGHG+ D TP ++AL +K IACG ++ A+ +
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 128
Query: 629 WVSS 632
V S
Sbjct: 129 EVQS 132
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 240 GDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT 299
G +Y WG + + G N++ + V + P + VV ++CG RH VT
Sbjct: 284 GKLYGWG---WNKFGQVGVGNNLDQC---SPVQVRFPDDQKVV----QVSCGWRHTLAVT 333
Query: 300 RQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTM 334
+ VF WG + G+LG G D P ++E+L++
Sbjct: 334 ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV 368
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 171/338 (50%), Gaps = 21/338 (6%)
Query: 274 PRPLESNVVLDVHHIA---CGVRHAALVTRQG-EVFTWGEESGGRLGHGVGKDIVQPHLL 329
P P + + LD H I CG H ++ G EV++WG GRLGHG D+ P +
Sbjct: 47 PSPTQLSA-LDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPI 105
Query: 330 ESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEG 389
++L + + CG+ H AVT GE+ +WG + G LG G +P++I EG
Sbjct: 106 KALHGIRIKQIACGDSHCLAVTXEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFEG 162
Query: 390 LQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVAC 449
+++ V G HTA +T G L+ +G G +G LG GDR + P V S G + VAC
Sbjct: 163 IRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVAC 222
Query: 450 GVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHK 509
G HT +V SG L+T+G +LGHGD E L P + AL + +
Sbjct: 223 GWRHTISVS-----------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQ 271
Query: 510 VACGHSLTVGLTTSGHVFTMGSTVYGQLG-NPNADGKLPCLVEDKLAGESVEEIACGAYH 568
++ G T LT+ G ++ G +GQ+G N D P V + V +++CG H
Sbjct: 272 ISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVSCGWRH 330
Query: 569 VAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEAL 606
+T RN V+ WG+G NG+LG G+ DR P ++EAL
Sbjct: 331 TLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 171/338 (50%), Gaps = 15/338 (4%)
Query: 288 IACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHT 347
I+ G H+ + V +WG G+LGHG +D P L +L + VTCG HT
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 348 CAVTMAG-ELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALIT 406
A + +G E+Y+WG G + G LGHG + P I L G+++ + CG H +T
Sbjct: 71 VAYSQSGXEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 127
Query: 407 STGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSS 466
G++ ++G G LG GD ++ P+++++ G+R VA G HTAAV E
Sbjct: 128 XEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTE------- 180
Query: 467 ASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHV 526
G L+ WG G LG GD+ RL P V + VACG T+ ++ SG +
Sbjct: 181 ----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGAL 236
Query: 527 FTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGAN 586
+T G + YGQLG+ + + L + L+ + +I+ GA H LTS ++Y WG
Sbjct: 237 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKF 296
Query: 587 GRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAI 624
G++G G+ D+ +P V D+ V ++CG ++ A+
Sbjct: 297 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 334
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 15/287 (5%)
Query: 266 GTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQ 325
G +D+ P P+++ + + IACG H VT +GEV +WG G+LG G +D +
Sbjct: 94 GNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLV 153
Query: 326 PHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISG 385
P +++ + V G HT AVT G+LY WG G + G LG G +P+R++
Sbjct: 154 PQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRY--GNLGLGDRTDRLVPERVT- 210
Query: 386 PLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTI 445
G + + V CG HT ++ +G L+T+G +G LGHGD ++ P ++E+LS
Sbjct: 211 STGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFIS 270
Query: 446 AVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDY 505
++ G HT A+ S GKL+ WG ++G G+ + P V D
Sbjct: 271 QISGGARHTXAL-----------TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ 319
Query: 506 NFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLG-NPNADGKLPCLVE 551
+V+CG T+ +T +VF G GQLG + D P ++E
Sbjct: 320 KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 366
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 391 QVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACG 450
+V ++ G H+ + S + ++G G G LGHGD ++ P ++ +L G + ++V CG
Sbjct: 7 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 66
Query: 451 VWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKV 510
HT A S S ++++WG GD RLGHG+ P + AL ++
Sbjct: 67 ADHTVAY----------SQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQI 116
Query: 511 ACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVA 570
ACG S + +T G V + G GQLG + + L G ++ +A GA H A
Sbjct: 117 ACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTA 176
Query: 571 VLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACG------SNYSAAI 624
+T ++Y WG G G LG GD DR P V + +ACG +YS A+
Sbjct: 177 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGAL 236
Query: 625 CLHKW 629
+ W
Sbjct: 237 YTYGW 241
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 265 LGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIV 324
LG D L+P+ +++ + + +A G H A VT G+++ WG G LG G D +
Sbjct: 145 LGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRL 204
Query: 325 QPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIS 384
P + S V CG HT +V+ +G LYT+G + G LGHG H IP ++
Sbjct: 205 VPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKY--GQLGHGDLEDHLIPHKLE 262
Query: 385 GPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRT 444
L ++ ++ G HT +TS G+L+ +G FG +G G+ + P +V +
Sbjct: 263 -ALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 321
Query: 445 IAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL 502
+ V+CG HT AV E +F WG G +LG G+ R P + AL
Sbjct: 322 VQVSCGWRHTLAVTE-----------RNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 106/201 (52%), Gaps = 13/201 (6%)
Query: 240 GDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT 299
GD+Y WG N+ LG R D L+P + S +ACG RH V+
Sbjct: 182 GDLYGWGWGRYGNLG----------LGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVS 231
Query: 300 RQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTW 359
G ++T+G G+LGHG +D + PH LE+L+ + + ++ G HT A+T G+LY W
Sbjct: 232 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGW 291
Query: 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTF 419
G + G +G G ++ P ++ P + +V V+CG HT +T +F +G GT
Sbjct: 292 --GWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 348
Query: 420 GVLGHGDRKNVSYPREVESLS 440
G LG G+ + ++P+ +E+LS
Sbjct: 349 GQLGIGESVDRNFPKIIEALS 369
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 240 GDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT 299
G +Y WG + + G N++ + V + P + VV ++CG RH VT
Sbjct: 286 GKLYGWG---WNKFGQVGVGNNLDQC---SPVQVRFPDDQKVV----QVSCGWRHTLAVT 335
Query: 300 RQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTM 334
+ VF WG + G+LG G D P ++E+L++
Sbjct: 336 ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV 370
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 179/358 (50%), Gaps = 16/358 (4%)
Query: 269 ADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHL 328
A V +P P E+ L + G + VT G+++ G +GGRLG G + + P L
Sbjct: 39 AKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTL 98
Query: 329 LESLTMTSVD--FVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGP 386
LES+ + V G H A++ GE+Y+WG+ G LGHG P+ I
Sbjct: 99 LESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIE-S 155
Query: 387 LEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIA 446
L G++V V G H+A +T+ G L+T+G G +G LGH D ++ P+ VE+L G R +
Sbjct: 156 LRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVD 215
Query: 447 VACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYN 506
+ACG Q+ +++WGDGD +LG G + P + +L
Sbjct: 216 IACGSGDA---------QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLG 266
Query: 507 FHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADG-KLPCLVEDKLAGESVEEIACG 565
KV CG +V LT SG V+T G Y +LG+ + D + P V+ L G+ V IA G
Sbjct: 267 VVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG-LQGKKVIAIATG 325
Query: 566 AYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAA 623
+ H T EVYTWG G+LG G + P LV AL+ + V +ACGS ++ A
Sbjct: 326 SLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 147/286 (51%), Gaps = 26/286 (9%)
Query: 240 GDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT 299
G+VY WGE D + + G R+ PR +ES ++V +A G H+A VT
Sbjct: 126 GEVYSWGEA---------EDGKLGH-GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVT 175
Query: 300 RQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTC--GEFHTCAVTMAGELY 357
G+++TWG+ GRLGH +D ++P L+E+L V + C G+ T +T ++
Sbjct: 176 AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVW 235
Query: 358 TWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDG 417
+WGDG + G LG G +P +I L GL V V CG + +T +G ++T+G G
Sbjct: 236 SWGDGDY--GKLGRGGSDGCKVPMKID-SLTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292
Query: 418 TFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTW 477
+ LGHG +V PR+V+ L G + IA+A G H E G+++TW
Sbjct: 293 DYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTE-----------DGEVYTW 341
Query: 478 GDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTS 523
GD D+ +LG G +P V AL ++VACG + T+ +TS
Sbjct: 342 GDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTS 387
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 162/328 (49%), Gaps = 32/328 (9%)
Query: 302 GEVFTWGEESGGRLGHGVGKDIVQPHLLESL-TMTSVDFVTCGEFHTCAVTMAGELYTWG 360
G ++ WG G+LG G + P E+L T+ V + GE AVT G+LY G
Sbjct: 20 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG-GEQTLFAVTADGKLYATG 78
Query: 361 DGTHNAGLLGHGTDVSHWIPKRISGP--LEGLQ-----VASVTCGPWHTALITSTGQLFT 413
G G + + +S P LE +Q +V G H ++S G++++
Sbjct: 79 --------YGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130
Query: 414 FGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGK 473
+G+ G LGHG+R PR +ESL G+ + VA G H+A V ++G
Sbjct: 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACV-----------TAAGD 179
Query: 474 LFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVAC--GHSLTVGLTTSGHVFTMGS 531
L+TWG G RLGH D E +LKP V AL + +AC G + T+ LT V++ G
Sbjct: 180 LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD 239
Query: 532 TVYGQLGNPNADG-KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLG 590
YG+LG +DG K+P + D L G V ++ CG+ LT VYTWGKG RLG
Sbjct: 240 GDYGKLGRGGSDGCKVPMKI-DSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLG 298
Query: 591 HGDVEDRKTPALVEALKDRHVKYIACGS 618
HG + + P V+ L+ + V IA GS
Sbjct: 299 HGSDDHVRRPRQVQGLQGKKVIAIATGS 326
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 28/278 (10%)
Query: 405 ITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSG--LRTIAVACGVWHTAAVVEVIV 462
+T+ G+L+ G G G LG G ++VS P +ES+ ++ +AV G H A+
Sbjct: 68 VTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALS---- 123
Query: 463 TQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTT 522
S G++++WG+ + +LGHG++ P +P + +L VA G + + +T
Sbjct: 124 -------SEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTA 176
Query: 523 SGHVFTMGSTVYGQLGNPNADGKL-PCLVEDKLAGESVEEIACGA--YHVAVLTSRNEVY 579
+G ++T G YG+LG+ +++ +L P LVE L G V +IACG+ LT + V+
Sbjct: 177 AGDLYTWGKGRYGRLGHSDSEDQLKPKLVE-ALQGHRVVDIACGSGDAQTLCLTDDDTVW 235
Query: 580 TWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAI----CLHKW------ 629
+WG G G+LG G + K P +++L V + CGS +S A+ ++ W
Sbjct: 236 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYH 295
Query: 630 -VSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCS 666
+ RQ G K+ G +HC C+
Sbjct: 296 RLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCT 333
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 110/224 (49%), Gaps = 19/224 (8%)
Query: 408 TGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSA 467
+G ++ +G G LG + V P E+L+ LR + + G AV
Sbjct: 19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT--------- 69
Query: 468 SVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVAC--GHSLTVGLTTSGH 525
+ GKL+ G G RLG G E PT + ++ KVA G + L++ G
Sbjct: 70 --ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGE 127
Query: 526 VFTMGSTVYGQLGNPNADGKLPC---LVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWG 582
V++ G G+LG+ N + PC V + L G V ++A G H A +T+ ++YTWG
Sbjct: 128 VYSWGEAEDGKLGHGN---RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWG 184
Query: 583 KGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAICL 626
KG GRLGH D ED+ P LVEAL+ V IACGS + +CL
Sbjct: 185 KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL 228
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 156/366 (42%), Gaps = 63/366 (17%)
Query: 292 VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVT--CGEFHTCA 349
V H + T G V T G+ G+LG G + V +L D V G HT
Sbjct: 17 VSHRSHSTEPGLVLTLGQGDVGQLGLG---ENVMERKKPALVSIPEDVVQAEAGGMHTVC 73
Query: 350 VTMAGELYTWGDGTHNAGLLGHGTDV--SHWIPKRISGPLEGLQ--VASVTCGPWHTALI 405
++ +G++Y++ G ++ G LG T V S +P ++ LQ V V+ G HTA +
Sbjct: 74 LSKSGQVYSF--GCNDEGALGRDTSVEGSEMVPGKVE-----LQEKVVQVSAGDSHTAAL 126
Query: 406 TSTGQLFTFG-----DGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEV 460
T G++F +G +G G+L + V +++ + + VA G H V
Sbjct: 127 TDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLD----VPVVKVASGNDHL-----V 177
Query: 461 IVTQSSASVSSGKLFTWGDGDK-----------NRLGHGDKEPRLKPTCV-----PALID 504
++T + G L+T G G++ NR G E L P CV +
Sbjct: 178 MLT------ADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 231
Query: 505 YNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAG-----ESV 559
F CG T ++ GHV+ G + Y QLG P + C + L +S
Sbjct: 232 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE---SCFIPQNLTSFKNSTKSW 288
Query: 560 EEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGD-VEDRKTPALVEALKDRHVKYIACGS 618
+ G +H + S + Y+ G+ GRLG G+ E++ P L+ L V +ACG+
Sbjct: 289 VGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGA 346
Query: 619 NYSAAI 624
+ A+
Sbjct: 347 SVGYAV 352
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 174/395 (44%), Gaps = 47/395 (11%)
Query: 261 NVNYLGTRADVL-LPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGV 319
+V LG +V+ +P ++ DV G H +++ G+V+++G G LG
Sbjct: 36 DVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT 95
Query: 320 ---GKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVS 376
G ++V P +E V V+ G+ HT A+T G ++ WG N G++G +
Sbjct: 96 SVEGSEMV-PGKVE--LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK 152
Query: 377 H-WIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGH--------GDR 427
+P ++ + ++VAS G H ++T+ G L+T G G G LG G R
Sbjct: 153 KSMVPVQVQLDVPVVKVAS---GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGR 209
Query: 428 KNVS---YPREVE-----SLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGD 479
+ + P+ V S +R CG + T A+ G ++ +G
Sbjct: 210 QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH-----------EGHVYGFGL 258
Query: 480 GDKNRLGHGDKEPRLKPTCVPALID--YNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQL 537
+ ++LG E P + + + ++ + G TV + + G +++G YG+L
Sbjct: 259 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 318
Query: 538 G-NPNADGK-LPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVE 595
G A+ K +P L+ A V +ACGA +T V+ WG G N +LG G E
Sbjct: 319 GLGEGAEEKSIPTLISRLPA---VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDE 375
Query: 596 DRKTPA--LVEALKDRHVKYIACGSNYSAAICLHK 628
D +P + + L++R V ++ G ++ + K
Sbjct: 376 DAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 410
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 459 EVIVTQSSASVSSGKLFTWGDGDKNRLGHGDK-EPRLKPTCVPALIDYNFHKVACGHSLT 517
+V V+ S S G + T G GD +LG G+ R KP V I + + G T
Sbjct: 14 KVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS--IPEDVVQAEAGGMHT 71
Query: 518 VGLTTSGHVFTMGSTVYGQLG-NPNADGK--LPCLVEDKLAGESVEEIACGAYHVAVLTS 574
V L+ SG V++ G G LG + + +G +P VE + E V +++ G H A LT
Sbjct: 72 VCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ---EKVVQVSAGDSHTAALTD 128
Query: 575 RNEVYTWG--KGANGRLG 590
V+ WG + NG +G
Sbjct: 129 DGRVFLWGSFRDNNGVIG 146
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 156/366 (42%), Gaps = 63/366 (17%)
Query: 292 VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVT--CGEFHTCA 349
V H + T G V T G+ G+LG G + V +L D V G HT
Sbjct: 6 VSHRSHSTEPGLVLTLGQGDVGQLGLG---ENVMERKKPALVSIPEDVVQAEAGGMHTVC 62
Query: 350 VTMAGELYTWGDGTHNAGLLGHGTDV--SHWIPKRISGPLEGLQ--VASVTCGPWHTALI 405
++ +G++Y++ G ++ G LG T V S +P ++ LQ V V+ G HTA +
Sbjct: 63 LSKSGQVYSF--GCNDEGALGRDTSVEGSEMVPGKVE-----LQEKVVQVSAGDSHTAAL 115
Query: 406 TSTGQLFTFG-----DGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEV 460
T G++F +G +G G+L + V +++ + + VA G H V
Sbjct: 116 TDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLD----VPVVKVASGNDHL-----V 166
Query: 461 IVTQSSASVSSGKLFTWGDGDK-----------NRLGHGDKEPRLKPTCV-----PALID 504
++T + G L+T G G++ NR G E L P CV +
Sbjct: 167 MLT------ADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 220
Query: 505 YNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAG-----ESV 559
F CG T ++ GHV+ G + Y QLG P + C + L +S
Sbjct: 221 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE---SCFIPQNLTSFKNSTKSW 277
Query: 560 EEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGD-VEDRKTPALVEALKDRHVKYIACGS 618
+ G +H + S + Y+ G+ GRLG G+ E++ P L+ L V +ACG+
Sbjct: 278 VGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGA 335
Query: 619 NYSAAI 624
+ A+
Sbjct: 336 SVGYAV 341
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 174/395 (44%), Gaps = 47/395 (11%)
Query: 261 NVNYLGTRADVL-LPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGV 319
+V LG +V+ +P ++ DV G H +++ G+V+++G G LG
Sbjct: 25 DVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT 84
Query: 320 ---GKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVS 376
G ++V P +E V V+ G+ HT A+T G ++ WG N G++G +
Sbjct: 85 SVEGSEMV-PGKVE--LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK 141
Query: 377 H-WIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGH--------GDR 427
+P ++ + ++VAS G H ++T+ G L+T G G G LG G R
Sbjct: 142 KSMVPVQVQLDVPVVKVAS---GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGR 198
Query: 428 KNVS---YPREVE-----SLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGD 479
+ + P+ V S +R CG + T A+ G ++ +G
Sbjct: 199 QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH-----------EGHVYGFGL 247
Query: 480 GDKNRLGHGDKEPRLKPTCVPALID--YNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQL 537
+ ++LG E P + + + ++ + G TV + + G +++G YG+L
Sbjct: 248 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 307
Query: 538 G-NPNADGK-LPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVE 595
G A+ K +P L+ A V +ACGA +T V+ WG G N +LG G E
Sbjct: 308 GLGEGAEEKSIPTLISRLPA---VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDE 364
Query: 596 DRKTPA--LVEALKDRHVKYIACGSNYSAAICLHK 628
D +P + + L++R V ++ G ++ + K
Sbjct: 365 DAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 399
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 459 EVIVTQSSASVSSGKLFTWGDGDKNRLGHGDK-EPRLKPTCVPALIDYNFHKVACGHSLT 517
+V V+ S S G + T G GD +LG G+ R KP V I + + G T
Sbjct: 3 KVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS--IPEDVVQAEAGGMHT 60
Query: 518 VGLTTSGHVFTMGSTVYGQLG-NPNADGK--LPCLVEDKLAGESVEEIACGAYHVAVLTS 574
V L+ SG V++ G G LG + + +G +P VE + E V +++ G H A LT
Sbjct: 61 VCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ---EKVVQVSAGDSHTAALTD 117
Query: 575 RNEVYTWG--KGANGRLG 590
V+ WG + NG +G
Sbjct: 118 DGRVFLWGSFRDNNGVIG 135
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 158/364 (43%), Gaps = 21/364 (5%)
Query: 249 ICDNVVKAGADKNVNYLGTRADVLLPRPLESNV-VLDVHHIACGVRHAALVTRQGEVFTW 307
+ NV+ G + +V LG D+L + L + D I+ G H ++T+ G+++++
Sbjct: 41 VLGNVLVCG-NGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSF 99
Query: 308 GEESGGRLGHGVGKDIVQ--PHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHN 365
G G LG +D + P L++ L ++ ++ G+ H+ + G ++ WG +
Sbjct: 100 GCNDEGALGRDTSEDGSESKPDLID-LPGKAL-CISAGDSHSACLLEDGRVFAWGSFRDS 157
Query: 366 AGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHG 425
G +G D + P + +EG S+ G H ++T+ G++FT G G LG
Sbjct: 158 HGNMGLTIDGNKRTPIDL---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRL 214
Query: 426 DRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASV--SSGKLFTWGDGDKN 483
+++S LR + + A E I + + S W G N
Sbjct: 215 SERSISGEGRRGKRDLLRPTQL---IITRAKPFEAIWATNYCTFMRESQTQVIWATGLNN 271
Query: 484 --RLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPN 541
+L H K T + + + +A G TV LTT +G YG+LG +
Sbjct: 272 FKQLAHETKGKEFALTPIKTELK-DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGD 330
Query: 542 ADGKL--PCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKT 599
+ P +V+ KL E + + CG +T ++Y+WG G N +LG GD +D
Sbjct: 331 VKDVVEKPTIVK-KLT-EKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELE 388
Query: 600 PALV 603
P +V
Sbjct: 389 PIVV 392
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 284 DVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQ-PHLLESLTMTSVDFVTC 342
D+ HIA G H ++T + G GRLG G KD+V+ P +++ LT V V C
Sbjct: 295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVS-VGC 353
Query: 343 GEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHT 402
GE + AVT+ G+LY+WG G +N +G G D LE + V S H
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD-----------ELEPIVVVSKNTQGKHM 402
Query: 403 ALITSTGQLFTF 414
L + GQ F
Sbjct: 403 LLASGGGQHAIF 414
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 265 LGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIV 324
LG DV+ + + + + CG + VT G++++WG +LG G G D +
Sbjct: 328 LGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDEL 387
Query: 325 QPHLLES 331
+P ++ S
Sbjct: 388 EPIVVVS 394
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 58/308 (18%)
Query: 240 GDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT 299
G+VY WG C+ + + T V P + N+V +A G H +
Sbjct: 167 GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKV--PTFSKYNIV----QLAPGKDHILFLD 220
Query: 300 RQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLT-----MTSVDFVTCGEFHTCAVTMAG 354
+G VF WG +L G+ +++ L++L + V ++ GE H A+T
Sbjct: 221 EEGMVFAWGNGQQNQL----GRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDN 276
Query: 355 ELYTWGDGTHNAGLLGHGTDVSHWI----PKRISGPLEGLQVASVTCGPWHTALITSTGQ 410
+L +W G + G G DV PKR++ P + + + S+ G H+ +++ G
Sbjct: 277 KLVSW--GLNQFGQCGVSEDVEDGALVTKPKRLALP-DNVVIRSIAAGEHHSLILSQDGD 333
Query: 411 LFTFGDGTFGVLG--------------HGDRKNVSYPREVESLSGLRTIAVACGVWHTAA 456
L++ G +G HG + V P ++ ++ ++ VA G H+ A
Sbjct: 334 LYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKS--VAAGSHHSVA 391
Query: 457 VVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALI------DYNFHKV 510
V + +G ++WG G+ +G G P T VP I D+N V
Sbjct: 392 VAQ-----------NGIAYSWGFGETYAVGLG---PFEDDTEVPTRIKNTATQDHNIILV 437
Query: 511 ACGHSLTV 518
CG +V
Sbjct: 438 GCGGQFSV 445
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/435 (20%), Positives = 148/435 (34%), Gaps = 70/435 (16%)
Query: 241 DVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTR 300
D++ WG + KN R + LPR E+ ++ A G H +
Sbjct: 30 DIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRD-EAKII----SFAVGGMHTLALDE 84
Query: 301 QGEVFTWGEESGGRLGHGVGKDIVQ-------------PHLLESLTMTSV-----DFVTC 342
+ V++WG G LG Q L L T F
Sbjct: 85 ESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPL 144
Query: 343 GEFH-----------TCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGP-LEGL 390
E H +CA+ GE+Y WG N G+LG D P
Sbjct: 145 AEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKY 204
Query: 391 QVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIA-VAC 449
+ + G H + G +F +G+G LG + GLR + +A
Sbjct: 205 NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS 264
Query: 450 GVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHG----DKEPRLKPTCVPALIDY 505
G H A+ + KL +WG + G D KP + +
Sbjct: 265 GENHCFALTK-----------DNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV 313
Query: 506 NFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGES------- 558
+A G ++ L+ G +++ G ++G P + LP + G++
Sbjct: 314 VIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDN--LPEYTYKDVHGKARAVPLPT 371
Query: 559 -------VEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVE-DRKTPALVE--ALKD 608
+ +A G++H + Y+WG G +G G E D + P ++ A +D
Sbjct: 372 KLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQD 431
Query: 609 RHVKYIACGSNYSAA 623
++ + CG +S +
Sbjct: 432 HNIILVGCGGQFSVS 446
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 99/264 (37%), Gaps = 52/264 (19%)
Query: 401 HTALITSTGQLFTFGDGTFGVLGHG---DRKNVSYPREVESL--SGLRTIAVACGVWHTA 455
H L +F +G G+ LG G K V PR L + I+ A G HT
Sbjct: 21 HMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTL 80
Query: 456 AVVEVIVTQSSASVSSGKLFTWGDGDKNRLGH--GDKEPRLKPT---------------- 497
A+ E +++WG D LG + + +LK
Sbjct: 81 ALDE-----------ESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNEL 129
Query: 498 -CVPALIDY-NFHKVACGH---------SLTVGLTTSGHVFTMGST-----VYGQLGNPN 541
PA I +F +A GH +++ L ++G V+ G+ + G +
Sbjct: 130 ESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKI 189
Query: 542 ADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPA 601
K P V + ++ ++A G H+ L V+ WG G +LG +E +
Sbjct: 190 KIQKTPWKVP-TFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKT 248
Query: 602 L-VEALKDRHVKYIACGSNYSAAI 624
L RHVKYIA G N+ A+
Sbjct: 249 LDPRPFGLRHVKYIASGENHCFAL 272
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 628 KWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCD 687
KW E C AC + F T +RH+C CG + C CS++ AL P+ KP RVCD
Sbjct: 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN----ALTPSSKKPVRVCD 117
Query: 688 CCFAKL 693
CF L
Sbjct: 118 ACFNDL 123
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 628 KWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCD 687
KW E C AC + F T +RH+C CG + C CS++ AL P+ KP RVCD
Sbjct: 2 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN----ALTPSSKKPVRVCD 57
Query: 688 CCFAKL 693
CF L
Sbjct: 58 ACFNDL 63
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 627 HKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVC 686
H W+ E C C + F +R++H+C NCG + C++CSS + AL P KP RVC
Sbjct: 18 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE---LALPSYP-KPVRVC 73
Query: 687 DCCFAKL 693
D C L
Sbjct: 74 DSCHTLL 80
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 629 WVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDC 688
WV +E C C+ F FT++RH+C CG V C C +RK L K RVC
Sbjct: 14 WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLE----KEARVCVV 69
Query: 689 CFAKLNK 695
C+ ++K
Sbjct: 70 CYETISK 76
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 627 HKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVC 686
H W+ E C C + F +R++H+C NCG + C++CSS + AL P+ KP RVC
Sbjct: 11 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE---LAL-PSYPKPVRVC 66
Query: 687 DCCFAKL 693
D C L
Sbjct: 67 DSCHTLL 73
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 629 WVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPG--KPYRVC 686
WV + E C CR FG ++H+C CG + C CSS + + P G K RVC
Sbjct: 161 WVDAEE---CHRCRVQFGVMTRKHHCRACGQIFCGKCSS----KYSTIPKFGIEKEVRVC 213
Query: 687 DCCFAKLNKVSE 698
+ C+ +LN+ +E
Sbjct: 214 EPCYEQLNRKAE 225
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 638 CSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPG----KPYRVCDCCFAKL 693
C CR F FT ++H+C NCG V C C++++ P P K RVCD CFA L
Sbjct: 164 CHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ------CPLPKYGIEKEVRVCDGCFAAL 217
Query: 694 NK 695
+
Sbjct: 218 QR 219
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 18 LIALKKGAQLLKYGRKG--KPKFYPFRLSNDETSLIWISS-----SGERSL-KLASVSKI 69
L AL KG+QLLK + +FY + ++ IW S S E L + + ++
Sbjct: 10 LQALLKGSQLLKVKSSSWRRERFYKLQ---EDCKTIWQESRKVMRSPESQLFSIEDIQEV 66
Query: 70 IPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123
G RT +++ R + FS+++ + + +LDLI +A+ W+ GL+ +I
Sbjct: 67 RMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKII 120
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 638 CSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNK 695
C C F T +RH+C+ CG + C +CS K L K VCD CF +L K
Sbjct: 378 CXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRXAK---VCDGCFGELKK 432
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 629 WVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPG--KPYRVC 686
W + C+ C F T +RH+C NCG V C CS RAA+ P G +P RVC
Sbjct: 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH---RAAI-PMRGITEPERVC 70
Query: 687 DCCFAKLNKVSEA 699
D C+ L + A
Sbjct: 71 DACYLALRSSNMA 83
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 629 WVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPG--KPYRVC 686
W+ S C C + F ++H+C +CG V C SS + P+ G +P RVC
Sbjct: 8 WIDSD---ACMICSKKFSLLNRKHHCRSCGGVFCQEHSS----NSIPLPDLGIYEPVRVC 60
Query: 687 DCCF 690
D CF
Sbjct: 61 DSCF 64
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 94/260 (36%), Gaps = 71/260 (27%)
Query: 273 LPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESL 332
+P +S V IA G H+ L + GEV WG G+ + +
Sbjct: 57 MPAATQSGV----DAIAAGNYHS-LALKDGEVIAWGGNEDGQT------------TVPAE 99
Query: 333 TMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQV 392
+ VD + G + + A+ G++ WGD + + + P E
Sbjct: 100 ARSGVDAIAAGAWASYALKD-GKVIAWGDDSDG----------------QTTVPAEAQSG 142
Query: 393 ASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVW 452
+ G +TAL G + +GD FG + P E + SG+ VA G++
Sbjct: 143 VTALDGGVYTALAVKNGGVIAWGDNYFG--------QTTVPAEAQ--SGVDD--VAGGIF 190
Query: 453 HTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVAC 512
H+ A+ + GK+ WGD R K T VP +A
Sbjct: 191 HSLALKD------------GKVIAWGD------------NRYKQTTVPTEALSGVSAIAS 226
Query: 513 GHSLTVGLTTSGHVFTMGST 532
G ++ L +G V GS+
Sbjct: 227 GEWYSLAL-KNGKVIAWGSS 245
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 94/260 (36%), Gaps = 71/260 (27%)
Query: 273 LPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESL 332
+P +S V IA G H+ L + GEV WG G+ + +
Sbjct: 59 MPAATQSGV----DAIAAGNYHS-LALKDGEVIAWGGNEDGQT------------TVPAE 101
Query: 333 TMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQV 392
+ VD + G + + A+ G++ WGD + + + P E
Sbjct: 102 ARSGVDAIAAGAWASYALKD-GKVIAWGDDSDG----------------QTTVPAEAQSG 144
Query: 393 ASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVW 452
+ G +TAL G + +GD FG + P E + SG+ VA G++
Sbjct: 145 VTALDGGVYTALAVKNGGVIAWGDNYFG--------QTTVPAEAQ--SGVDD--VAGGIF 192
Query: 453 HTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVAC 512
H+ A+ + GK+ WGD R K T VP +A
Sbjct: 193 HSLALKD------------GKVIAWGD------------NRYKQTTVPTEALSGVSAIAS 228
Query: 513 GHSLTVGLTTSGHVFTMGST 532
G ++ L +G V GS+
Sbjct: 229 GEWYSLAL-KNGKVIAWGSS 247
>pdb|1MOS|A Chain A, Isomerase Domain Of Glucosamine 6-phosphate Synthase
Complexed With 2- Amino-2-deoxyglucitol 6-phosphate
pdb|1MOQ|A Chain A, Isomerase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glucosamine 6-Phosphate
pdb|1MOR|A Chain A, Isomerase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glucose 6-Phosphate
Length = 368
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 586 NGRLGHGDVEDRKT-PALVEAL-KDRHVKYIACGSNYSAAICLHKWVSSAEQLQC 638
GR+ HG V+ + P E L K H++ +ACG++Y++ + W S + C
Sbjct: 28 TGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPC 82
>pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|B Chain B, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|C Chain C, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|2BPL|A Chain A, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|B Chain B, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|C Chain C, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
Length = 608
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 586 NGRLGHGDVEDRKT-PALVEAL-KDRHVKYIACGSNYSAAICLHKWVSSAEQLQC 638
GR+ HG V+ + P E L K H++ +ACG++Y++ + W S + C
Sbjct: 268 TGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPC 322
>pdb|3OOJ|A Chain A, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|B Chain B, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|C Chain C, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|D Chain D, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|E Chain E, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|F Chain F, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|G Chain G, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|H Chain H, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
Length = 608
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 586 NGRLGHGDVEDRKT-PALVEAL-KDRHVKYIACGSNYSAAICLHKWVSSAEQLQC 638
GR+ HG V+ + P E L K H++ +ACG++Y++ + W S + C
Sbjct: 268 TGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPC 322
>pdb|2J6H|A Chain A, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2J6H|B Chain B, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2VF4|X Chain X, E. Coli Glucosamine-6-P Synthase
pdb|2VF5|X Chain X, Glucosamine-6-Phosphate Synthase In Complex With
Glucosamine-6-Phosphate
Length = 608
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 586 NGRLGHGDVEDRKT-PALVEAL-KDRHVKYIACGSNYSAAICLHKWVSSAEQLQC 638
GR+ HG V+ + P E L K H++ +ACG++Y++ + W S + C
Sbjct: 268 TGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPC 322
>pdb|3TBF|A Chain A, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|B Chain B, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|C Chain C, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|D Chain D, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|E Chain E, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|F Chain F, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|G Chain G, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|H Chain H, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis
Length = 372
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 593 DVEDRKTPALVEALKDRHVKYIACGSNYSAAICLHKWVSSAEQLQCS 639
D D++ L E K +H+ +ACG++Y+A W+ ++ CS
Sbjct: 41 DSFDKRAKELFE--KTKHICIVACGTSYNAGXTAKYWIEKYAKVPCS 85
>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase
pdb|3DYD|B Chain B, Human Tyrosine Aminotransferase
Length = 427
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 126 GQGGRSKIDGWNDGGLYLEDSRDLTSNSASDSSVSLTRDISSP 168
G R + GW G + + D RD+ N D V L++ I P
Sbjct: 260 GLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGP 302
>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase
Length = 402
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 126 GQGGRSKIDGWNDGGLYLEDSRDLTSNSASDSSVSLTRDISSP 168
G R + GW G + + D RD+ N D V L++ I P
Sbjct: 237 GLAXRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGP 279
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 637 QCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAAL 675
C+ C F +KR +C NCG C C S K ++++
Sbjct: 16 NCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSM 54
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 501 ALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNP 540
AL+++ F +V +++ G+T T G T +G LG+P
Sbjct: 297 ALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTNWGNLGHP 336
>pdb|3G5Z|A Chain A, Antibodies Specifically Targeting A Locally Misfolded
Region Of Tumor Associated Egfr
Length = 213
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 362 GTHNAGLLGHGTDVSHWIPKRISGPLEG----LQVASVTCGPWHTALITSTGQL-FTFGD 416
G AGL+ HGT++S +P R SG G L ++S+ + Q +TFG
Sbjct: 41 GKSFAGLIYHGTNLSDGVPSRFSGSGSGADYSLTISSLESEDFADYYCVQYAQFPWTFGG 100
Query: 417 GT 418
GT
Sbjct: 101 GT 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,421,584
Number of Sequences: 62578
Number of extensions: 1260472
Number of successful extensions: 3294
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3052
Number of HSP's gapped (non-prelim): 84
length of query: 1065
length of database: 14,973,337
effective HSP length: 109
effective length of query: 956
effective length of database: 8,152,335
effective search space: 7793632260
effective search space used: 7793632260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)