Query 001504
Match_columns 1065
No_of_seqs 797 out of 3135
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:28:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 2.2E-45 4.7E-50 412.1 30.2 362 235-625 63-463 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 4.8E-40 1E-44 369.2 25.0 329 292-653 58-422 (476)
3 KOG1427 Uncharacterized conser 100.0 2.8E-39 6E-44 340.5 20.3 336 269-626 42-398 (443)
4 KOG1427 Uncharacterized conser 100.0 1.4E-34 3E-39 305.1 17.3 304 301-624 19-343 (443)
5 KOG0783 Uncharacterized conser 99.9 1.1E-25 2.3E-30 261.6 15.4 302 297-626 137-448 (1267)
6 KOG0783 Uncharacterized conser 99.9 6.8E-25 1.5E-29 255.0 15.2 308 234-577 136-451 (1267)
7 KOG1428 Inhibitor of type V ad 99.8 4.9E-20 1.1E-24 219.8 23.2 282 237-567 495-887 (3738)
8 cd01248 PH_PLC Phospholipase C 99.8 1.7E-20 3.8E-25 181.6 9.8 106 17-122 2-115 (115)
9 KOG1428 Inhibitor of type V ad 99.8 8.6E-19 1.9E-23 209.4 22.0 298 285-621 481-889 (3738)
10 PF12814 Mcp5_PH: Meiotic cell 99.7 3.5E-17 7.5E-22 160.2 12.5 106 14-124 2-122 (123)
11 PF08381 BRX: Transcription fa 99.6 3.3E-16 7.1E-21 129.5 4.4 34 1032-1065 1-34 (59)
12 KOG1264 Phospholipase C [Lipid 99.4 5.8E-14 1.3E-18 164.3 -0.6 138 1-138 1-147 (1267)
13 KOG0169 Phosphoinositide-speci 99.4 2.4E-13 5.2E-18 161.8 3.2 124 14-137 10-138 (746)
14 PF13713 BRX_N: Transcription 99.2 5E-12 1.1E-16 96.4 3.3 37 876-913 1-37 (39)
15 PF01363 FYVE: FYVE zinc finge 99.1 1.7E-11 3.8E-16 107.8 2.8 67 628-694 2-68 (69)
16 PF00415 RCC1: Regulator of ch 99.1 7E-11 1.5E-15 97.3 4.1 50 575-624 1-51 (51)
17 KOG1818 Membrane trafficking a 99.0 1.4E-09 3E-14 129.1 12.0 70 625-699 158-227 (634)
18 KOG0941 E3 ubiquitin protein l 99.0 5.3E-12 1.1E-16 151.1 -9.2 188 274-525 5-198 (850)
19 PF00415 RCC1: Regulator of ch 98.9 1.1E-09 2.3E-14 90.2 5.6 50 301-350 1-51 (51)
20 smart00064 FYVE Protein presen 98.9 3.5E-10 7.7E-15 99.2 2.9 66 627-694 2-67 (68)
21 KOG1729 FYVE finger containing 98.9 4.6E-10 1E-14 123.8 0.6 68 625-695 158-226 (288)
22 KOG0941 E3 ubiquitin protein l 98.8 1.8E-10 3.9E-15 138.2 -7.3 182 389-576 13-197 (850)
23 PTZ00303 phosphatidylinositol 98.8 3.4E-09 7.4E-14 124.3 3.1 72 625-696 449-532 (1374)
24 PF13540 RCC1_2: Regulator of 98.7 3.1E-08 6.8E-13 72.5 4.6 30 392-421 1-30 (30)
25 PF13540 RCC1_2: Regulator of 98.6 3.7E-08 8.1E-13 72.1 4.7 30 285-314 1-30 (30)
26 KOG1819 FYVE finger-containing 98.6 1E-08 2.2E-13 115.4 1.2 70 621-692 887-961 (990)
27 KOG2999 Regulator of Rac1, req 98.6 7.5E-09 1.6E-13 119.0 -0.3 115 15-129 534-665 (713)
28 cd00065 FYVE FYVE domain; Zinc 98.5 7.3E-08 1.6E-12 81.4 2.1 55 635-691 2-56 (57)
29 KOG1842 FYVE finger-containing 97.8 1.8E-06 3.9E-11 97.6 -2.7 69 627-695 172-260 (505)
30 KOG1841 Smad anchor for recept 97.6 1.5E-05 3.4E-10 98.6 0.7 61 626-689 548-608 (1287)
31 cd01244 PH_RasGAP_CG9209 RAS_G 97.6 0.00046 9.9E-09 65.1 10.3 86 24-121 4-97 (98)
32 cd01235 PH_SETbf Set binding f 97.4 0.001 2.2E-08 62.6 10.2 93 26-123 4-101 (101)
33 cd01238 PH_Tec Tec pleckstrin 97.3 0.00042 9E-09 66.4 6.6 78 37-121 22-105 (106)
34 KOG1409 Uncharacterized conser 97.3 0.00011 2.4E-09 81.3 2.0 80 612-696 254-352 (404)
35 cd01266 PH_Gab Gab (Grb2-assoc 97.0 0.0036 7.9E-08 60.1 9.4 79 37-122 20-107 (108)
36 cd01265 PH_PARIS-1 PARIS-1 ple 97.0 0.0059 1.3E-07 57.3 10.3 83 25-122 3-93 (95)
37 cd01236 PH_outspread Outspread 96.9 0.0048 1E-07 58.9 8.9 80 29-121 18-102 (104)
38 KOG1843 Uncharacterized conser 96.9 0.00024 5.3E-09 80.1 -0.1 67 627-694 152-219 (473)
39 PF00169 PH: PH domain; Inter 96.9 0.014 3E-07 53.8 11.7 90 26-123 6-103 (104)
40 cd01264 PH_melted Melted pleck 96.8 0.0056 1.2E-07 58.0 8.9 75 37-121 20-99 (101)
41 smart00233 PH Pleckstrin homol 96.8 0.0078 1.7E-07 54.6 9.0 91 22-123 3-101 (102)
42 cd01247 PH_GPBP Goodpasture an 96.7 0.011 2.4E-07 55.1 9.7 78 26-120 4-89 (91)
43 cd01233 Unc104 Unc-104 pleckst 96.7 0.0087 1.9E-07 56.7 9.0 93 21-124 3-99 (100)
44 cd00821 PH Pleckstrin homology 96.3 0.015 3.2E-07 52.1 7.6 77 34-121 14-95 (96)
45 cd01251 PH_centaurin_alpha Cen 96.2 0.041 8.9E-07 52.4 10.5 88 26-124 4-101 (103)
46 cd01219 PH_FGD FGD (faciogenit 96.1 0.039 8.4E-07 52.4 9.5 92 21-124 3-100 (101)
47 cd01220 PH_CDEP Chondrocyte-de 95.8 0.061 1.3E-06 51.0 9.3 87 21-123 3-97 (99)
48 KOG4424 Predicted Rho/Rac guan 95.7 0.0026 5.7E-08 75.0 -0.4 65 632-699 412-477 (623)
49 cd01250 PH_centaurin Centaurin 95.4 0.12 2.7E-06 47.4 9.8 31 88-120 62-92 (94)
50 PF15409 PH_8: Pleckstrin homo 95.1 0.18 4E-06 46.7 9.6 83 26-121 2-87 (89)
51 cd01246 PH_oxysterol_bp Oxyste 94.9 0.16 3.4E-06 46.3 8.9 80 26-121 4-90 (91)
52 cd00900 PH-like Pleckstrin hom 94.7 0.22 4.7E-06 44.8 9.4 76 34-121 17-98 (99)
53 cd01256 PH_dynamin Dynamin ple 94.7 0.14 3E-06 47.8 7.7 74 33-119 16-101 (110)
54 cd01257 PH_IRS Insulin recepto 94.7 0.23 4.9E-06 47.3 9.6 81 26-121 7-100 (101)
55 cd01241 PH_Akt Akt pleckstrin 94.3 0.26 5.6E-06 46.9 9.0 94 22-122 3-101 (102)
56 KOG1265 Phospholipase C [Lipid 94.1 0.21 4.6E-06 61.8 9.7 105 17-123 13-134 (1189)
57 cd01252 PH_cytohesin Cytohesin 93.8 0.39 8.5E-06 47.3 9.5 88 26-126 5-116 (125)
58 cd01260 PH_CNK Connector enhan 93.7 0.46 1E-05 44.3 9.5 72 36-121 20-95 (96)
59 KOG3669 Uncharacterized conser 93.5 5.8 0.00013 47.8 19.7 69 284-358 228-298 (705)
60 PF11725 AvrE: Pathogenicity f 93.2 1.9 4.2E-05 57.5 16.7 108 500-626 698-813 (1774)
61 PF15413 PH_11: Pleckstrin hom 92.5 0.87 1.9E-05 44.1 9.6 93 26-121 4-111 (112)
62 KOG1811 Predicted Zn2+-binding 90.8 0.036 7.8E-07 65.6 -2.3 67 626-694 313-384 (1141)
63 KOG3669 Uncharacterized conser 90.1 18 0.00039 43.8 18.6 107 290-414 190-299 (705)
64 cd01245 PH_RasGAP_CG5898 RAS G 89.9 2 4.3E-05 40.7 8.8 75 37-121 17-97 (98)
65 KOG2059 Ras GTPase-activating 89.3 0.6 1.3E-05 57.0 6.0 96 21-128 565-669 (800)
66 KOG4552 Vitamin-D-receptor int 89.1 30 0.00065 36.7 17.2 53 839-894 68-120 (272)
67 cd01254 PH_PLD Phospholipase D 89.1 2 4.3E-05 42.2 8.6 83 37-121 34-120 (121)
68 PF03904 DUF334: Domain of unk 88.6 2.8 6.1E-05 45.0 9.7 61 837-899 42-109 (230)
69 cd01261 PH_SOS Son of Sevenles 88.3 3.9 8.4E-05 39.7 9.8 93 20-124 4-110 (112)
70 KOG0230 Phosphatidylinositol-4 87.3 0.37 8.1E-06 63.1 2.8 47 636-695 6-52 (1598)
71 KOG2391 Vacuolar sorting prote 87.0 16 0.00036 41.5 14.9 49 827-875 235-283 (365)
72 KOG0943 Predicted ubiquitin-pr 86.8 0.096 2.1E-06 65.8 -2.6 131 281-419 372-507 (3015)
73 cd01242 PH_ROK Rok (Rho- assoc 85.3 7.8 0.00017 37.4 9.8 39 85-123 72-110 (112)
74 cd01218 PH_phafin2 Phafin2 Pl 85.0 5.9 0.00013 38.0 9.0 85 26-125 9-100 (104)
75 PF04849 HAP1_N: HAP1 N-termin 84.5 4.2 9.1E-05 46.0 8.9 60 830-903 224-285 (306)
76 PLN02153 epithiospecifier prot 83.1 95 0.0021 35.7 26.1 16 568-583 307-322 (341)
77 PF08458 PH_2: Plant pleckstri 83.1 8.9 0.00019 37.0 9.2 37 89-125 69-105 (110)
78 PF02318 FYVE_2: FYVE-type zin 83.0 0.94 2E-05 44.3 2.8 51 634-693 53-104 (118)
79 cd01237 Unc112 Unc-112 pleckst 80.6 9.1 0.0002 36.8 8.3 76 33-121 18-101 (106)
80 COG3074 Uncharacterized protei 80.1 6 0.00013 34.5 6.2 35 826-860 27-61 (79)
81 PF03962 Mnd1: Mnd1 family; I 79.7 7.2 0.00016 41.4 8.2 65 838-903 62-126 (188)
82 PF12718 Tropomyosin_1: Tropom 79.5 13 0.00029 37.6 9.7 59 826-885 16-74 (143)
83 PHA01750 hypothetical protein 79.3 5 0.00011 34.6 5.4 38 832-869 36-73 (75)
84 PF02183 HALZ: Homeobox associ 79.1 3 6.5E-05 33.8 3.9 31 825-855 13-43 (45)
85 TIGR02449 conserved hypothetic 79.0 15 0.00031 32.3 8.3 60 840-899 2-61 (65)
86 PF12325 TMF_TATA_bd: TATA ele 78.6 20 0.00044 35.3 10.3 68 824-902 16-83 (120)
87 PF12718 Tropomyosin_1: Tropom 77.9 19 0.00041 36.5 10.3 51 826-876 37-104 (143)
88 PF07888 CALCOCO1: Calcium bin 76.5 13 0.00029 45.3 10.0 45 826-870 152-196 (546)
89 PRK15396 murein lipoprotein; P 76.5 6.7 0.00015 35.6 5.8 39 839-881 26-64 (78)
90 KOG3551 Syntrophins (type beta 76.5 7.1 0.00015 44.9 7.3 108 12-123 146-271 (506)
91 PF11932 DUF3450: Protein of u 75.9 24 0.00052 39.1 11.3 35 834-868 52-86 (251)
92 PLN02153 epithiospecifier prot 75.8 1.6E+02 0.0034 34.0 20.6 17 345-362 130-146 (341)
93 cd01232 PH_TRIO Trio pleckstri 75.5 13 0.00029 36.2 8.0 39 86-124 72-113 (114)
94 PF11725 AvrE: Pathogenicity f 75.1 9.3 0.0002 51.5 8.8 72 504-576 743-815 (1774)
95 PF06005 DUF904: Protein of un 74.9 26 0.00056 31.4 9.0 56 829-898 16-71 (72)
96 KOG1029 Endocytic adaptor prot 74.4 13 0.00028 46.3 9.1 51 819-869 467-517 (1118)
97 PF11559 ADIP: Afadin- and alp 74.3 33 0.00071 34.9 11.0 20 835-854 56-75 (151)
98 PTZ00267 NIMA-related protein 73.5 10 0.00022 46.0 8.3 92 24-123 380-476 (478)
99 KOG1900 Nuclear pore complex, 72.8 68 0.0015 42.8 15.4 217 296-531 93-339 (1311)
100 cd01253 PH_beta_spectrin Beta- 72.8 30 0.00065 32.5 9.7 33 88-121 71-103 (104)
101 PF04977 DivIC: Septum formati 71.9 9.6 0.00021 34.0 5.8 33 834-866 20-52 (80)
102 PF02403 Seryl_tRNA_N: Seryl-t 71.7 24 0.00053 33.7 8.9 36 835-870 26-61 (108)
103 PRK14161 heat shock protein Gr 71.6 23 0.0005 37.3 9.3 53 825-877 13-65 (178)
104 cd01222 PH_clg Clg (common-sit 71.1 9.5 0.00021 36.1 5.7 37 87-123 58-95 (97)
105 PF15619 Lebercilin: Ciliary p 70.8 31 0.00067 36.9 10.2 65 839-903 119-187 (194)
106 PF10186 Atg14: UV radiation r 70.6 29 0.00064 38.9 10.8 45 825-869 64-108 (302)
107 PF14662 CCDC155: Coiled-coil 69.6 30 0.00065 36.7 9.4 45 825-869 9-53 (193)
108 PF06428 Sec2p: GDP/GTP exchan 69.4 22 0.00047 33.9 7.7 64 840-903 3-67 (100)
109 PF11559 ADIP: Afadin- and alp 69.2 47 0.001 33.8 10.8 31 832-862 60-90 (151)
110 cd01223 PH_Vav Vav pleckstrin 69.2 30 0.00065 33.8 8.7 96 22-124 6-112 (116)
111 PRK11637 AmiB activator; Provi 68.6 30 0.00065 41.5 10.7 32 837-868 60-91 (428)
112 KOG2106 Uncharacterized conser 68.1 2.8E+02 0.0061 33.7 20.2 87 287-413 216-303 (626)
113 PF07106 TBPIP: Tat binding pr 67.8 16 0.00035 37.9 7.3 34 835-868 76-109 (169)
114 PF13863 DUF4200: Domain of un 67.8 61 0.0013 31.7 11.0 74 829-902 23-96 (126)
115 cd01228 PH_BCR-related BCR (br 67.5 21 0.00045 33.6 6.9 81 21-123 3-94 (96)
116 COG1579 Zn-ribbon protein, pos 67.2 43 0.00092 36.9 10.4 77 829-908 101-177 (239)
117 KOG0982 Centrosomal protein Nu 65.7 38 0.00083 39.7 10.0 77 826-902 299-389 (502)
118 PF10211 Ax_dynein_light: Axon 65.6 38 0.00083 36.0 9.6 34 835-868 124-157 (189)
119 PRK09973 putative outer membra 65.5 20 0.00043 33.1 6.3 39 839-881 25-63 (85)
120 TIGR03752 conj_TIGR03752 integ 65.2 43 0.00092 40.3 10.6 66 838-903 73-139 (472)
121 PRK14155 heat shock protein Gr 65.2 26 0.00056 37.9 8.2 37 834-870 16-52 (208)
122 PHA03098 kelch-like protein; P 65.1 1.5E+02 0.0033 36.3 16.3 17 345-362 335-351 (534)
123 PF02403 Seryl_tRNA_N: Seryl-t 64.8 22 0.00048 33.9 7.0 69 836-904 34-105 (108)
124 PF04728 LPP: Lipoprotein leuc 64.1 28 0.0006 29.6 6.3 38 840-881 5-42 (56)
125 PF06785 UPF0242: Uncharacteri 63.7 23 0.00051 40.1 7.6 49 826-874 129-177 (401)
126 cd01259 PH_Apbb1ip Apbb1ip (Am 63.2 23 0.00051 34.3 6.6 94 23-123 3-108 (114)
127 KOG0241 Kinesin-like protein [ 63.0 29 0.00064 44.2 9.0 74 827-903 360-434 (1714)
128 KOG0993 Rab5 GTPase effector R 62.9 0.49 1.1E-05 54.1 -5.4 64 628-695 461-526 (542)
129 PHA03098 kelch-like protein; P 62.5 3.3E+02 0.0072 33.4 18.5 17 400-417 335-351 (534)
130 PF15358 TSKS: Testis-specific 62.4 54 0.0012 38.2 10.3 60 815-874 116-178 (558)
131 PRK14163 heat shock protein Gr 61.8 62 0.0013 35.1 10.3 42 833-874 42-83 (214)
132 PRK11637 AmiB activator; Provi 61.8 47 0.001 39.8 10.7 9 1042-1050 406-414 (428)
133 PRK14160 heat shock protein Gr 61.5 53 0.0012 35.6 9.7 51 826-876 56-106 (211)
134 cd01224 PH_Collybistin Collybi 61.5 80 0.0017 30.7 9.9 87 27-120 8-104 (109)
135 KOG0977 Nuclear envelope prote 61.4 33 0.00073 42.0 9.1 54 821-874 96-149 (546)
136 PF15406 PH_6: Pleckstrin homo 61.4 19 0.00042 34.6 5.6 65 41-121 42-111 (112)
137 KOG0315 G-protein beta subunit 61.4 2.7E+02 0.0058 31.0 18.4 54 469-533 143-198 (311)
138 PF07569 Hira: TUP1-like enhan 60.9 29 0.00063 37.7 7.9 29 334-362 12-40 (219)
139 PF10168 Nup88: Nuclear pore c 60.8 75 0.0016 40.7 12.5 79 825-903 537-623 (717)
140 PF15290 Syntaphilin: Golgi-lo 60.7 67 0.0015 35.9 10.3 27 842-868 72-98 (305)
141 PRK14154 heat shock protein Gr 60.6 44 0.00096 36.1 8.9 41 835-875 56-96 (208)
142 PF04111 APG6: Autophagy prote 60.5 65 0.0014 37.1 10.9 42 828-869 47-88 (314)
143 PRK14139 heat shock protein Gr 60.4 47 0.001 35.2 9.0 44 834-877 35-78 (185)
144 PRK14148 heat shock protein Gr 60.4 54 0.0012 35.1 9.5 63 830-893 39-101 (195)
145 PRK14143 heat shock protein Gr 60.1 63 0.0014 35.7 10.2 64 829-893 65-128 (238)
146 PRK14162 heat shock protein Gr 59.9 50 0.0011 35.3 9.1 61 832-893 40-100 (194)
147 PF07888 CALCOCO1: Calcium bin 59.4 68 0.0015 39.4 11.2 41 826-866 159-199 (546)
148 KOG1900 Nuclear pore complex, 59.1 2.2E+02 0.0049 38.3 16.2 205 347-583 92-339 (1311)
149 cd01227 PH_Dbs Dbs (DBL's big 58.7 91 0.002 31.3 10.2 39 86-124 78-116 (133)
150 KOG4603 TBP-1 interacting prot 58.4 74 0.0016 33.0 9.5 34 834-867 82-115 (201)
151 PF05278 PEARLI-4: Arabidopsis 58.4 75 0.0016 35.6 10.4 79 826-904 148-238 (269)
152 KOG4441 Proteins containing BT 58.2 2.5E+02 0.0053 35.2 16.2 56 519-583 471-530 (571)
153 COG0576 GrpE Molecular chapero 58.1 54 0.0012 35.1 9.1 61 833-894 38-98 (193)
154 PRK14156 heat shock protein Gr 58.0 44 0.00095 35.2 8.2 57 836-893 32-88 (177)
155 PRK14153 heat shock protein Gr 57.1 40 0.00086 36.1 7.8 67 826-893 26-94 (194)
156 PRK15422 septal ring assembly 56.7 37 0.0008 30.8 6.2 29 827-855 28-56 (79)
157 TIGR00414 serS seryl-tRNA synt 56.7 52 0.0011 39.4 9.7 34 837-870 29-62 (418)
158 KOG0943 Predicted ubiquitin-pr 56.6 9.8 0.00021 49.1 3.6 111 471-581 329-453 (3015)
159 PRK00888 ftsB cell division pr 56.4 29 0.00064 33.3 6.1 33 834-866 30-62 (105)
160 KOG1274 WD40 repeat protein [G 56.3 1.3E+02 0.0029 38.7 13.1 148 343-529 14-165 (933)
161 KOG0649 WD40 repeat protein [G 55.9 3.3E+02 0.0071 30.3 18.5 50 282-332 62-112 (325)
162 PHA02713 hypothetical protein; 55.8 2.5E+02 0.0055 34.9 15.9 20 343-362 341-360 (557)
163 PRK09039 hypothetical protein; 55.7 61 0.0013 37.8 9.8 38 837-874 136-173 (343)
164 PRK05431 seryl-tRNA synthetase 55.7 50 0.0011 39.7 9.4 82 823-904 12-104 (425)
165 KOG4797 Transcriptional regula 55.7 41 0.00089 32.1 6.6 27 837-863 66-92 (123)
166 PRK14158 heat shock protein Gr 55.2 73 0.0016 34.1 9.4 46 832-877 41-86 (194)
167 PRK00409 recombination and DNA 55.1 68 0.0015 41.6 11.0 11 108-118 39-49 (782)
168 cd01239 PH_PKD Protein kinase 55.0 68 0.0015 31.4 8.2 90 26-120 5-115 (117)
169 PF10458 Val_tRNA-synt_C: Valy 54.5 30 0.00065 30.2 5.4 54 846-899 5-65 (66)
170 PF13851 GAS: Growth-arrest sp 54.5 86 0.0019 33.7 10.0 68 828-899 38-105 (201)
171 KOG0230 Phosphatidylinositol-4 54.3 5.3 0.00011 53.1 0.9 34 630-665 92-125 (1598)
172 PF03908 Sec20: Sec20; InterP 54.1 92 0.002 29.0 9.0 37 822-858 3-39 (92)
173 PRK14141 heat shock protein Gr 54.0 56 0.0012 35.3 8.4 33 836-868 36-68 (209)
174 PRK14131 N-acetylneuraminic ac 53.9 3E+02 0.0065 32.3 15.4 18 400-417 131-148 (376)
175 KOG4403 Cell surface glycoprot 53.9 72 0.0016 37.5 9.6 23 833-855 304-326 (575)
176 PF14197 Cep57_CLD_2: Centroso 53.8 1.5E+02 0.0033 26.3 9.6 61 835-898 2-65 (69)
177 KOG0804 Cytoplasmic Zn-finger 53.7 85 0.0019 37.3 10.2 44 827-870 350-400 (493)
178 TIGR00414 serS seryl-tRNA synt 53.6 48 0.001 39.7 8.8 70 835-904 34-107 (418)
179 PRK10884 SH3 domain-containing 53.6 1.2E+02 0.0026 32.8 10.8 34 833-866 95-128 (206)
180 PF09304 Cortex-I_coil: Cortex 53.6 1.4E+02 0.003 28.9 9.8 51 823-873 22-72 (107)
181 PF09738 DUF2051: Double stran 53.5 1.2E+02 0.0025 34.9 11.2 76 821-903 78-163 (302)
182 PF04899 MbeD_MobD: MbeD/MobD 53.3 30 0.00064 30.9 5.1 40 826-865 30-69 (70)
183 PF05957 DUF883: Bacterial pro 53.1 1E+02 0.0023 28.6 9.2 43 835-877 2-45 (94)
184 PRK14151 heat shock protein Gr 53.0 64 0.0014 34.0 8.5 42 835-876 24-65 (176)
185 KOG4196 bZIP transcription fac 52.8 38 0.00081 33.5 6.1 36 826-861 76-111 (135)
186 PF13815 Dzip-like_N: Iguana/D 52.6 32 0.0007 33.6 5.9 42 826-867 68-109 (118)
187 PF04156 IncA: IncA protein; 52.4 71 0.0015 33.6 9.0 24 835-858 92-115 (191)
188 TIGR01069 mutS2 MutS2 family p 52.4 78 0.0017 41.0 10.8 28 838-865 532-559 (771)
189 PF11068 YlqD: YlqD protein; 52.2 1.1E+02 0.0023 30.8 9.4 65 841-906 23-92 (131)
190 TIGR01035 hemA glutamyl-tRNA r 52.1 44 0.00096 39.9 8.2 75 828-902 314-400 (417)
191 PF15035 Rootletin: Ciliary ro 52.0 39 0.00086 35.7 6.8 43 827-869 91-133 (182)
192 PF01025 GrpE: GrpE; InterPro 51.8 23 0.00049 36.5 5.0 47 830-876 10-56 (165)
193 KOG0612 Rho-associated, coiled 51.4 70 0.0015 42.4 9.9 45 860-904 488-532 (1317)
194 PRK15365 type III secretion sy 51.0 1.3E+02 0.0028 28.4 8.9 82 827-908 12-101 (107)
195 PLN02320 seryl-tRNA synthetase 50.8 62 0.0014 39.5 9.1 80 823-904 77-168 (502)
196 KOG4514 Uncharacterized conser 50.7 3E+02 0.0065 29.0 12.4 30 798-827 99-129 (222)
197 PRK02119 hypothetical protein; 50.4 1.3E+02 0.0028 27.0 8.8 33 838-870 2-34 (73)
198 KOG1729 FYVE finger containing 50.1 5.3 0.00011 45.1 -0.0 65 628-692 13-81 (288)
199 PF04728 LPP: Lipoprotein leuc 50.1 77 0.0017 27.0 6.7 37 835-871 7-43 (56)
200 PRK14147 heat shock protein Gr 50.0 75 0.0016 33.3 8.4 39 836-874 23-61 (172)
201 PF03904 DUF334: Domain of unk 50.0 1.1E+02 0.0025 33.2 9.7 79 825-904 44-137 (230)
202 KOG1090 Predicted dual-specifi 49.8 11 0.00025 47.9 2.7 78 34-123 1649-1731(1732)
203 PRK03564 formate dehydrogenase 49.6 13 0.00028 42.5 2.9 75 615-698 192-267 (309)
204 PF04156 IncA: IncA protein; 49.3 1E+02 0.0022 32.5 9.5 59 842-900 92-150 (191)
205 PF09304 Cortex-I_coil: Cortex 49.2 1.7E+02 0.0036 28.3 9.6 59 822-881 28-86 (107)
206 PHA02047 phage lambda Rz1-like 49.1 92 0.002 29.3 7.7 25 846-870 35-59 (101)
207 COG2433 Uncharacterized conser 49.0 99 0.0021 38.2 10.1 33 826-858 431-463 (652)
208 KOG0930 Guanine nucleotide exc 49.0 63 0.0014 36.0 7.8 102 22-125 261-377 (395)
209 PF11932 DUF3450: Protein of u 48.9 1.3E+02 0.0028 33.3 10.7 31 837-867 48-78 (251)
210 PF09006 Surfac_D-trimer: Lung 48.8 38 0.00083 27.5 4.5 26 841-866 2-27 (46)
211 PRK14140 heat shock protein Gr 48.6 1.1E+02 0.0025 32.6 9.6 60 832-893 39-98 (191)
212 KOG0976 Rho/Rac1-interacting s 48.2 88 0.0019 39.5 9.6 38 831-868 92-129 (1265)
213 KOG1003 Actin filament-coating 47.5 80 0.0017 33.6 7.9 53 847-902 48-103 (205)
214 PRK14146 heat shock protein Gr 47.2 85 0.0018 34.2 8.5 44 834-877 57-100 (215)
215 PF10422 LRS4: Monopolin compl 47.2 6.3 0.00014 43.0 0.0 59 832-893 52-110 (249)
216 PF10186 Atg14: UV radiation r 46.9 1.3E+02 0.0029 33.6 10.7 37 826-862 72-108 (302)
217 PRK14145 heat shock protein Gr 46.7 1.2E+02 0.0026 32.6 9.4 45 833-877 47-91 (196)
218 PF07798 DUF1640: Protein of u 46.7 1.5E+02 0.0033 31.0 10.2 44 828-871 88-139 (177)
219 KOG3478 Prefoldin subunit 6, K 46.6 48 0.001 31.9 5.6 46 826-871 71-116 (120)
220 PF10473 CENP-F_leu_zip: Leuci 46.6 1.7E+02 0.0037 29.7 10.0 17 884-900 123-139 (140)
221 PF10473 CENP-F_leu_zip: Leuci 46.5 1.1E+02 0.0025 30.9 8.7 39 837-875 9-47 (140)
222 PF07061 Swi5: Swi5; InterPro 46.3 57 0.0012 30.1 6.0 21 884-904 37-59 (83)
223 PRK14144 heat shock protein Gr 46.1 95 0.0021 33.4 8.5 57 835-892 49-105 (199)
224 KOG4657 Uncharacterized conser 45.2 84 0.0018 34.1 7.8 41 826-866 71-121 (246)
225 PF12329 TMF_DNA_bd: TATA elem 44.9 1E+02 0.0023 27.6 7.4 29 840-868 14-42 (74)
226 PF05377 FlaC_arch: Flagella a 44.8 86 0.0019 26.6 6.3 40 835-874 4-43 (55)
227 PF11853 DUF3373: Protein of u 44.6 19 0.00042 43.4 3.5 33 837-870 24-56 (489)
228 PF14662 CCDC155: Coiled-coil 44.5 2.3E+02 0.005 30.2 10.8 24 828-851 33-56 (193)
229 PF10267 Tmemb_cc2: Predicted 44.5 1.6E+02 0.0034 35.0 10.8 20 827-846 222-241 (395)
230 PF09755 DUF2046: Uncharacteri 44.2 2.8E+02 0.006 31.8 12.2 50 827-876 23-72 (310)
231 KOG1760 Molecular chaperone Pr 44.1 2.2E+02 0.0049 28.1 9.8 65 835-899 34-117 (131)
232 PF03961 DUF342: Protein of un 44.1 43 0.00093 40.5 6.4 70 835-904 331-406 (451)
233 PF01486 K-box: K-box region; 43.6 1.6E+02 0.0034 27.9 8.8 63 831-895 12-83 (100)
234 smart00338 BRLZ basic region l 43.6 64 0.0014 27.9 5.7 35 834-868 29-63 (65)
235 PHA02713 hypothetical protein; 43.5 3.3E+02 0.0071 34.0 14.1 17 401-417 344-360 (557)
236 PF10267 Tmemb_cc2: Predicted 43.5 3E+02 0.0066 32.8 12.9 30 832-861 213-242 (395)
237 PF04762 IKI3: IKI3 family; I 43.4 9.1E+02 0.02 32.2 18.7 47 516-584 593-639 (928)
238 PF15294 Leu_zip: Leucine zipp 43.3 61 0.0013 36.5 6.8 45 831-875 132-176 (278)
239 TIGR01063 gyrA DNA gyrase, A s 43.3 9E+02 0.019 31.7 20.5 212 342-585 544-770 (800)
240 PRK14154 heat shock protein Gr 43.1 2.3E+02 0.005 30.7 10.9 77 827-903 62-150 (208)
241 PF09728 Taxilin: Myosin-like 42.7 1.6E+02 0.0035 33.8 10.4 69 835-903 132-218 (309)
242 PRK14157 heat shock protein Gr 42.7 1E+02 0.0022 33.8 8.2 44 834-877 80-123 (227)
243 PF09730 BicD: Microtubule-ass 42.6 1.2E+02 0.0027 38.6 10.1 60 835-901 262-321 (717)
244 PRK13729 conjugal transfer pil 42.5 50 0.0011 39.8 6.4 20 884-903 108-127 (475)
245 PLN02678 seryl-tRNA synthetase 42.3 63 0.0014 39.0 7.3 82 822-904 15-109 (448)
246 PF07569 Hira: TUP1-like enhan 42.1 74 0.0016 34.6 7.2 30 556-585 12-41 (219)
247 PF15456 Uds1: Up-regulated Du 42.0 1.5E+02 0.0034 29.4 8.7 68 835-903 18-97 (124)
248 COG1842 PspA Phage shock prote 41.3 1.6E+02 0.0035 32.3 9.6 40 839-878 46-85 (225)
249 PF08317 Spc7: Spc7 kinetochor 41.3 83 0.0018 36.3 7.9 16 887-902 276-291 (325)
250 COG3599 DivIVA Cell division i 41.2 2E+02 0.0043 31.3 10.1 77 827-903 26-108 (212)
251 PF10168 Nup88: Nuclear pore c 41.1 61 0.0013 41.5 7.3 65 835-903 643-708 (717)
252 TIGR01069 mutS2 MutS2 family p 40.9 1.3E+02 0.0028 39.0 10.3 13 108-120 39-51 (771)
253 PRK00591 prfA peptide chain re 40.8 1.7E+02 0.0037 34.4 10.3 68 837-912 38-112 (359)
254 PF00038 Filament: Intermediat 40.6 1.8E+02 0.0039 33.0 10.6 68 826-893 63-137 (312)
255 TIGR03185 DNA_S_dndD DNA sulfu 40.4 1.5E+02 0.0034 37.5 10.8 34 836-869 433-466 (650)
256 PF00038 Filament: Intermediat 40.4 2.3E+02 0.005 32.2 11.4 54 830-883 46-99 (312)
257 PF12325 TMF_TATA_bd: TATA ele 40.3 2.7E+02 0.0058 27.6 10.0 52 826-877 39-93 (120)
258 COG0497 RecN ATPase involved i 40.3 1.1E+02 0.0025 37.7 9.0 50 851-902 341-390 (557)
259 PF06102 DUF947: Domain of unk 40.2 1.7E+02 0.0037 30.6 9.2 43 827-869 52-96 (168)
260 PRK10869 recombination and rep 40.0 91 0.002 38.8 8.5 20 882-901 369-388 (553)
261 PF04841 Vps16_N: Vps16, N-ter 39.8 7.2E+02 0.016 29.6 16.6 26 557-582 217-244 (410)
262 TIGR01562 FdhE formate dehydro 39.8 20 0.00043 41.0 2.5 75 615-698 189-267 (305)
263 smart00787 Spc7 Spc7 kinetocho 39.8 2.3E+02 0.0049 32.7 11.0 21 825-845 173-193 (312)
264 PF07407 Seadorna_VP6: Seadorn 39.7 86 0.0019 35.7 7.2 24 828-851 36-59 (420)
265 PF15450 DUF4631: Domain of un 39.6 1.5E+02 0.0032 36.1 9.6 84 821-904 277-368 (531)
266 PF06103 DUF948: Bacterial pro 39.6 2.7E+02 0.0059 25.6 9.6 29 838-866 40-68 (90)
267 smart00787 Spc7 Spc7 kinetocho 39.4 88 0.0019 36.0 7.6 31 837-867 217-247 (312)
268 PF13935 Ead_Ea22: Ead/Ea22-li 39.3 1.8E+02 0.0038 29.4 8.9 41 835-875 71-113 (139)
269 PF07926 TPR_MLP1_2: TPR/MLP1/ 39.2 2.7E+02 0.0058 27.7 10.2 61 835-895 7-67 (132)
270 PRK00846 hypothetical protein; 39.2 3E+02 0.0066 25.1 10.1 54 843-903 11-64 (77)
271 PF04420 CHD5: CHD5-like prote 39.1 70 0.0015 33.1 6.2 38 829-866 38-87 (161)
272 PF04111 APG6: Autophagy prote 39.0 2.7E+02 0.0059 32.1 11.5 79 825-903 51-129 (314)
273 COG3883 Uncharacterized protei 38.9 1.3E+02 0.0028 33.7 8.5 22 882-903 82-103 (265)
274 PLN02678 seryl-tRNA synthetase 38.7 1.5E+02 0.0033 35.9 9.8 26 883-908 92-117 (448)
275 KOG2391 Vacuolar sorting prote 38.6 5.1E+02 0.011 30.1 13.0 37 826-862 213-249 (365)
276 KOG3067 Translin family protei 38.6 97 0.0021 32.7 6.9 62 841-909 23-84 (226)
277 KOG4441 Proteins containing BT 38.5 1.9E+02 0.0041 36.2 10.9 21 511-531 510-530 (571)
278 PF05911 DUF869: Plant protein 38.3 83 0.0018 40.5 7.8 65 835-900 684-760 (769)
279 PF06103 DUF948: Bacterial pro 38.3 1.5E+02 0.0032 27.3 7.6 38 840-877 28-65 (90)
280 PRK08475 F0F1 ATP synthase sub 38.3 3.3E+02 0.0072 28.3 11.1 27 827-853 49-78 (167)
281 PRK14164 heat shock protein Gr 38.1 1.3E+02 0.0028 32.9 8.1 35 838-872 77-111 (218)
282 TIGR02894 DNA_bind_RsfA transc 37.7 1.3E+02 0.0028 31.2 7.5 33 836-868 102-134 (161)
283 KOG0649 WD40 repeat protein [G 37.6 3.5E+02 0.0076 30.1 11.1 48 389-437 62-110 (325)
284 PF00170 bZIP_1: bZIP transcri 37.6 94 0.002 26.8 5.8 25 839-863 34-58 (64)
285 PF13815 Dzip-like_N: Iguana/D 37.5 1.1E+02 0.0024 29.9 7.0 35 836-870 71-105 (118)
286 PRK00295 hypothetical protein; 37.3 96 0.0021 27.4 5.8 13 889-901 42-54 (68)
287 PF05529 Bap31: B-cell recepto 37.3 63 0.0014 34.2 5.7 12 889-900 177-188 (192)
288 PRK00736 hypothetical protein; 37.3 88 0.0019 27.7 5.6 14 889-902 42-55 (68)
289 TIGR00293 prefoldin, archaeal 37.2 1.3E+02 0.0028 29.5 7.5 33 835-867 3-35 (126)
290 PF07200 Mod_r: Modifier of ru 37.0 2.5E+02 0.0054 28.4 9.8 44 825-868 35-78 (150)
291 PRK14131 N-acetylneuraminic ac 37.0 7.4E+02 0.016 28.9 17.6 18 345-362 131-148 (376)
292 PF04102 SlyX: SlyX; InterPro 37.0 65 0.0014 28.5 4.8 12 889-900 41-52 (69)
293 PF09730 BicD: Microtubule-ass 37.0 1.7E+02 0.0037 37.4 10.1 65 840-904 400-464 (717)
294 PF03310 Cauli_DNA-bind: Cauli 36.8 1.3E+02 0.0028 29.6 7.1 53 836-898 1-56 (121)
295 PF06005 DUF904: Protein of un 36.8 1.5E+02 0.0032 26.6 7.0 29 839-867 5-33 (72)
296 PF01519 DUF16: Protein of unk 36.8 2.1E+02 0.0045 27.5 8.1 47 843-903 51-97 (102)
297 PF14362 DUF4407: Domain of un 36.6 2.1E+02 0.0045 32.6 10.1 59 845-903 135-205 (301)
298 PRK06568 F0F1 ATP synthase sub 36.6 4E+02 0.0087 27.5 11.1 36 868-903 87-131 (154)
299 PRK04325 hypothetical protein; 36.5 3E+02 0.0066 24.7 9.0 26 843-868 7-32 (74)
300 PF10805 DUF2730: Protein of u 36.5 2.5E+02 0.0054 27.0 9.0 67 836-902 33-101 (106)
301 TIGR03752 conj_TIGR03752 integ 36.4 1.9E+02 0.004 35.1 9.7 65 835-902 77-145 (472)
302 PRK05560 DNA gyrase subunit A; 36.2 1.1E+03 0.024 30.8 21.6 212 342-585 546-773 (805)
303 PF06156 DUF972: Protein of un 36.1 93 0.002 30.1 6.0 40 834-873 18-57 (107)
304 cd01230 PH_EFA6 EFA6 Pleckstri 36.1 2.5E+02 0.0054 27.6 9.1 35 88-123 77-111 (117)
305 PRK14161 heat shock protein Gr 36.1 2.7E+02 0.0059 29.4 10.0 69 826-894 7-77 (178)
306 KOG0646 WD40 repeat protein [G 36.1 8.6E+02 0.019 29.4 15.1 24 392-415 222-245 (476)
307 KOG2911 Uncharacterized conser 36.0 2.3E+02 0.0049 33.8 10.1 35 821-855 230-264 (439)
308 PF04508 Pox_A_type_inc: Viral 35.9 36 0.00078 23.7 2.2 17 838-854 1-17 (23)
309 PF04841 Vps16_N: Vps16, N-ter 35.9 8.3E+02 0.018 29.2 18.7 69 283-359 81-152 (410)
310 PF06273 eIF-4B: Plant specifi 35.8 1.2E+02 0.0026 36.6 8.0 22 883-904 399-420 (492)
311 PRK06568 F0F1 ATP synthase sub 35.8 4.5E+02 0.0097 27.2 11.3 38 841-881 48-85 (154)
312 PF07246 Phlebovirus_NSM: Phle 35.6 1.1E+02 0.0025 34.0 7.3 18 886-903 215-232 (264)
313 KOG4693 Uncharacterized conser 35.5 2.6E+02 0.0057 31.3 9.9 63 344-415 80-146 (392)
314 PRK00045 hemA glutamyl-tRNA re 35.5 1E+02 0.0022 37.0 7.7 71 827-898 316-398 (423)
315 cd01263 PH_anillin Anillin Ple 35.5 1.7E+02 0.0037 28.9 7.9 17 104-120 104-120 (122)
316 cd01249 PH_oligophrenin Oligop 35.3 3.9E+02 0.0086 25.8 10.0 35 85-119 67-101 (104)
317 cd00632 Prefoldin_beta Prefold 35.3 1.2E+02 0.0026 28.9 6.7 42 829-870 61-102 (105)
318 PF07200 Mod_r: Modifier of ru 35.2 3.1E+02 0.0067 27.7 10.2 44 828-871 45-88 (150)
319 KOG0315 G-protein beta subunit 35.0 6.9E+02 0.015 28.0 18.9 107 285-416 88-196 (311)
320 cd01221 PH_ephexin Ephexin Ple 34.9 1.6E+02 0.0035 29.3 7.6 33 88-120 83-119 (125)
321 PF01166 TSC22: TSC-22/dip/bun 34.8 46 0.001 28.4 3.2 30 837-866 13-42 (59)
322 PF07889 DUF1664: Protein of u 34.8 4.4E+02 0.0095 26.3 10.6 12 765-776 23-34 (126)
323 PF06364 DUF1068: Protein of u 34.7 1.5E+02 0.0033 30.8 7.4 13 830-842 84-96 (176)
324 PF15030 DUF4527: Protein of u 34.7 1.7E+02 0.0037 32.1 8.2 22 826-847 11-32 (277)
325 KOG1962 B-cell receptor-associ 34.5 1.3E+02 0.0027 32.8 7.3 40 829-868 149-188 (216)
326 COG1340 Uncharacterized archae 34.4 3.3E+02 0.0072 31.0 10.8 25 839-863 159-183 (294)
327 PF01920 Prefoldin_2: Prefoldi 34.4 87 0.0019 29.3 5.6 42 829-870 60-101 (106)
328 PRK13940 glutamyl-tRNA reducta 34.3 1.2E+02 0.0026 36.4 7.9 73 828-901 310-394 (414)
329 PF10018 Med4: Vitamin-D-recep 34.2 1.2E+02 0.0026 32.2 7.1 46 826-871 4-55 (188)
330 smart00706 TECPR Beta propelle 34.2 59 0.0013 24.3 3.5 24 391-414 9-33 (35)
331 PRK13729 conjugal transfer pil 34.2 2.2E+02 0.0048 34.5 9.9 15 889-903 106-120 (475)
332 cd01240 PH_beta-ARK Beta adren 34.2 72 0.0016 30.9 4.8 75 37-123 21-98 (116)
333 PF07851 TMPIT: TMPIT-like pro 34.1 2.1E+02 0.0045 33.3 9.4 24 881-904 69-92 (330)
334 PTZ00464 SNF-7-like protein; P 34.1 1.2E+02 0.0026 33.0 7.1 21 884-904 99-122 (211)
335 TIGR02209 ftsL_broad cell divi 34.0 1.6E+02 0.0035 26.5 7.1 33 833-865 26-58 (85)
336 TIGR01063 gyrA DNA gyrase, A s 34.0 1.2E+03 0.026 30.5 21.4 122 288-423 542-674 (800)
337 PF10883 DUF2681: Protein of u 34.0 1.8E+02 0.0039 27.1 7.2 26 838-863 30-55 (87)
338 PRK14159 heat shock protein Gr 34.0 1.8E+02 0.0039 30.7 8.2 37 837-873 29-65 (176)
339 PRK00409 recombination and DNA 33.9 2.1E+02 0.0046 37.2 10.6 8 846-853 545-552 (782)
340 COG4026 Uncharacterized protei 33.9 1.9E+02 0.0041 31.3 8.3 76 834-909 115-195 (290)
341 PF09744 Jnk-SapK_ap_N: JNK_SA 33.9 2.3E+02 0.005 29.4 8.8 33 832-864 83-115 (158)
342 KOG3723 PH domain protein Melt 33.8 27 0.00058 42.3 2.3 81 37-128 755-841 (851)
343 COG2900 SlyX Uncharacterized p 33.7 2.6E+02 0.0056 25.1 7.7 55 841-902 4-58 (72)
344 KOG0639 Transducin-like enhanc 33.7 1E+02 0.0022 37.1 6.9 36 831-866 23-58 (705)
345 PRK06746 peptide chain release 33.5 2.8E+02 0.0061 32.1 10.3 76 826-910 7-85 (326)
346 KOG0291 WD40-repeat-containing 33.4 1.2E+03 0.025 30.2 23.6 120 285-419 300-424 (893)
347 PF00261 Tropomyosin: Tropomyo 33.4 3.6E+02 0.0079 29.6 11.1 64 835-899 124-188 (237)
348 PRK12472 hypothetical protein; 33.3 1.8E+02 0.0039 35.2 8.9 45 825-869 205-249 (508)
349 cd00632 Prefoldin_beta Prefold 33.2 94 0.002 29.6 5.6 44 823-866 62-105 (105)
350 PF00170 bZIP_1: bZIP transcri 33.2 1.7E+02 0.0036 25.2 6.7 24 840-863 28-51 (64)
351 PF07798 DUF1640: Protein of u 33.1 2.6E+02 0.0056 29.3 9.4 58 846-903 74-136 (177)
352 PF13094 CENP-Q: CENP-Q, a CEN 33.0 2.3E+02 0.005 29.1 8.9 16 888-903 70-85 (160)
353 KOG0293 WD40 repeat-containing 33.0 8.6E+02 0.019 29.1 13.9 68 443-533 397-471 (519)
354 KOG4360 Uncharacterized coiled 33.0 1.9E+02 0.0041 35.1 8.9 19 884-902 265-283 (596)
355 PF09726 Macoilin: Transmembra 32.8 1.5E+02 0.0033 37.9 8.8 42 825-866 539-580 (697)
356 PRK13979 DNA topoisomerase IV 32.8 1.4E+03 0.029 30.8 24.4 115 293-419 517-641 (957)
357 PF11853 DUF3373: Protein of u 32.8 34 0.00073 41.5 3.0 30 837-866 30-59 (489)
358 KOG2264 Exostosin EXT1L [Signa 32.7 3.1E+02 0.0067 33.7 10.6 71 826-903 81-151 (907)
359 COG1382 GimC Prefoldin, chaper 32.7 1E+02 0.0022 30.4 5.7 41 823-863 69-109 (119)
360 PRK04406 hypothetical protein; 32.5 1.1E+02 0.0024 27.7 5.5 53 843-902 9-61 (75)
361 PF05082 Rop-like: Rop-like; 32.4 1.1E+02 0.0024 26.9 5.3 28 839-866 3-30 (66)
362 smart00502 BBC B-Box C-termina 32.3 4.4E+02 0.0095 24.9 10.5 43 826-868 9-51 (127)
363 KOG0278 Serine/threonine kinas 32.3 4.5E+02 0.0098 29.4 10.9 40 323-362 133-173 (334)
364 PF08614 ATG16: Autophagy prot 32.2 57 0.0012 34.7 4.4 30 838-867 116-145 (194)
365 PF08317 Spc7: Spc7 kinetochor 32.2 2.2E+02 0.0049 32.8 9.6 20 826-845 151-170 (325)
366 TIGR02894 DNA_bind_RsfA transc 32.2 1.9E+02 0.0042 29.9 7.8 41 827-867 100-140 (161)
367 PRK02793 phi X174 lysis protei 32.1 1.1E+02 0.0025 27.3 5.5 53 844-903 7-59 (72)
368 PF09388 SpoOE-like: Spo0E lik 32.1 62 0.0013 26.0 3.5 37 836-872 2-38 (45)
369 COG4345 Uncharacterized protei 32.1 1.6E+02 0.0035 30.5 7.1 50 849-898 122-171 (181)
370 PF08614 ATG16: Autophagy prot 32.0 1.9E+02 0.0041 30.8 8.3 31 835-865 120-150 (194)
371 KOG3229 Vacuolar sorting prote 31.8 5.3E+02 0.011 27.9 11.0 61 825-885 12-74 (227)
372 TIGR03548 mutarot_permut cycli 31.7 8E+02 0.017 27.8 16.0 17 345-362 116-132 (323)
373 PF04102 SlyX: SlyX; InterPro 31.7 2.6E+02 0.0056 24.7 7.7 48 843-904 2-49 (69)
374 PF13851 GAS: Growth-arrest sp 31.6 4.2E+02 0.009 28.5 10.8 53 827-879 89-141 (201)
375 COG3883 Uncharacterized protei 31.6 2.4E+02 0.0052 31.7 9.0 26 839-864 53-78 (265)
376 PF08647 BRE1: BRE1 E3 ubiquit 31.5 3.1E+02 0.0067 25.8 8.7 44 829-872 8-51 (96)
377 PLN00188 enhanced disease resi 31.4 1.3E+02 0.0027 38.3 7.6 97 25-126 8-112 (719)
378 PF13747 DUF4164: Domain of un 31.3 1.8E+02 0.0039 27.1 6.9 12 881-892 75-86 (89)
379 KOG0612 Rho-associated, coiled 31.1 1.4E+02 0.0031 39.7 8.1 77 827-903 563-639 (1317)
380 PF10046 BLOC1_2: Biogenesis o 31.0 4.4E+02 0.0094 25.0 9.7 42 825-866 22-63 (99)
381 COG4257 Vgb Streptogramin lyas 31.0 4.3E+02 0.0094 30.0 10.7 140 229-414 60-205 (353)
382 KOG3751 Growth factor receptor 31.0 1.6E+02 0.0036 35.7 8.0 91 23-123 320-424 (622)
383 TIGR01730 RND_mfp RND family e 30.9 1.4E+02 0.0031 33.6 7.6 32 835-866 61-92 (322)
384 PF10211 Ax_dynein_light: Axon 30.8 3.2E+02 0.0069 29.1 9.7 33 840-872 122-154 (189)
385 KOG0239 Kinesin (KAR3 subfamil 30.7 2.8E+02 0.0062 35.4 10.7 77 827-903 237-316 (670)
386 PF02344 Myc-LZ: Myc leucine z 30.6 1.3E+02 0.0027 22.6 4.4 26 840-865 3-28 (32)
387 PRK14127 cell division protein 30.4 1.4E+02 0.003 29.1 6.1 44 827-870 26-69 (109)
388 PF15408 PH_7: Pleckstrin homo 30.4 78 0.0017 29.2 4.1 78 19-120 16-94 (104)
389 PRK04325 hypothetical protein; 30.3 1.3E+02 0.0028 27.1 5.5 54 836-903 7-60 (74)
390 TIGR02338 gimC_beta prefoldin, 30.1 3.7E+02 0.0081 25.8 9.2 35 836-870 8-42 (110)
391 PF03962 Mnd1: Mnd1 family; I 30.0 2.4E+02 0.0052 30.0 8.6 35 821-855 59-93 (188)
392 COG1842 PspA Phage shock prote 30.0 2.9E+02 0.0063 30.3 9.3 44 827-870 95-138 (225)
393 PRK09973 putative outer membra 29.9 1.8E+02 0.004 26.9 6.5 40 835-874 28-67 (85)
394 PF04762 IKI3: IKI3 family; I 29.9 1.5E+03 0.032 30.3 21.0 39 271-309 412-455 (928)
395 PF04977 DivIC: Septum formati 29.8 1.1E+02 0.0024 27.1 5.2 33 838-870 17-49 (80)
396 COG2433 Uncharacterized conser 29.7 2.6E+02 0.0055 34.9 9.5 22 559-580 246-268 (652)
397 PF03357 Snf7: Snf7; InterPro 29.5 1.6E+02 0.0034 30.0 7.1 29 842-870 5-33 (171)
398 PF04949 Transcrip_act: Transc 29.5 2.1E+02 0.0046 29.1 7.4 39 846-885 85-130 (159)
399 PF09726 Macoilin: Transmembra 29.2 1.9E+02 0.0042 37.0 8.9 17 849-865 464-480 (697)
400 PF05929 Phage_GPO: Phage caps 29.2 2.8E+02 0.006 31.5 9.2 20 886-905 234-253 (276)
401 PF05384 DegS: Sensor protein 29.2 5.2E+02 0.011 26.9 10.5 42 827-868 23-64 (159)
402 KOG4364 Chromatin assembly fac 29.1 5.3E+02 0.012 32.5 11.9 10 837-846 256-265 (811)
403 PF07851 TMPIT: TMPIT-like pro 29.1 2.6E+02 0.0057 32.4 9.1 21 884-904 65-85 (330)
404 TIGR02169 SMC_prok_A chromosom 29.0 2.6E+02 0.0056 37.8 10.8 7 572-578 642-648 (1164)
405 smart00706 TECPR Beta propelle 29.0 96 0.0021 23.2 3.9 25 335-359 8-33 (35)
406 COG3166 PilN Tfp pilus assembl 29.0 1.9E+02 0.0042 31.3 7.6 69 825-908 49-117 (206)
407 PF13863 DUF4200: Domain of un 28.9 1.4E+02 0.0031 29.1 6.3 34 833-866 76-109 (126)
408 COG0373 HemA Glutamyl-tRNA red 28.9 1.8E+02 0.0038 34.9 8.0 73 827-900 310-394 (414)
409 TIGR00019 prfA peptide chain r 28.8 3.7E+02 0.0081 31.6 10.4 51 862-912 56-112 (360)
410 PRK14149 heat shock protein Gr 28.6 2.5E+02 0.0055 30.0 8.3 32 839-870 44-75 (191)
411 PF04012 PspA_IM30: PspA/IM30 28.6 3.1E+02 0.0067 29.6 9.4 35 846-880 52-86 (221)
412 PRK04406 hypothetical protein; 28.5 2.6E+02 0.0057 25.3 7.2 15 889-903 41-55 (75)
413 PF10224 DUF2205: Predicted co 28.5 2.2E+02 0.0047 26.2 6.7 38 829-866 14-51 (80)
414 PLN03188 kinesin-12 family pro 28.4 2.6E+02 0.0056 37.8 9.8 52 846-897 1109-1165(1320)
415 PF05667 DUF812: Protein of un 28.4 3.1E+02 0.0067 34.5 10.4 39 836-874 326-364 (594)
416 PF00804 Syntaxin: Syntaxin; 28.4 2.6E+02 0.0057 25.6 7.8 16 884-899 87-102 (103)
417 PRK09174 F0F1 ATP synthase sub 28.2 5.6E+02 0.012 27.6 11.1 16 839-854 95-110 (204)
418 PF05911 DUF869: Plant protein 28.2 3.4E+02 0.0073 35.2 10.8 52 846-897 618-669 (769)
419 PRK00846 hypothetical protein; 28.1 1.5E+02 0.0032 27.0 5.5 33 830-862 26-58 (77)
420 PRK14160 heat shock protein Gr 28.0 2.7E+02 0.0058 30.3 8.5 63 840-904 56-118 (211)
421 PF12777 MT: Microtubule-bindi 28.0 3.1E+02 0.0068 31.9 9.9 11 838-848 15-25 (344)
422 PF05103 DivIVA: DivIVA protei 27.9 17 0.00037 35.7 -0.5 36 829-864 23-58 (131)
423 PF02388 FemAB: FemAB family; 27.9 1.7E+02 0.0036 35.0 7.8 31 828-858 239-269 (406)
424 PF12329 TMF_DNA_bd: TATA elem 27.9 4.5E+02 0.0097 23.6 8.7 26 845-870 33-58 (74)
425 PF11365 DUF3166: Protein of u 27.9 1.8E+02 0.004 27.6 6.3 79 827-905 4-87 (96)
426 TIGR02449 conserved hypothetic 27.7 2.4E+02 0.0053 24.8 6.6 33 829-861 19-51 (65)
427 PTZ00446 vacuolar sorting prot 27.6 2.4E+02 0.0052 30.2 8.0 32 835-866 24-55 (191)
428 PF06120 Phage_HK97_TLTM: Tail 27.6 4.1E+02 0.0088 30.5 10.2 29 827-855 74-105 (301)
429 COG4257 Vgb Streptogramin lyas 27.5 3.1E+02 0.0068 31.1 8.9 139 343-529 62-205 (353)
430 PF08172 CASP_C: CASP C termin 27.4 2E+02 0.0043 32.0 7.7 35 824-858 86-120 (248)
431 KOG3564 GTPase-activating prot 27.3 4E+02 0.0087 32.2 10.2 68 837-904 27-108 (604)
432 PRK14472 F0F1 ATP synthase sub 27.2 6E+02 0.013 26.4 10.9 14 840-853 61-74 (175)
433 COG3064 TolA Membrane protein 27.2 2.7E+02 0.0059 31.8 8.5 16 868-883 149-164 (387)
434 KOG2002 TPR-containing nuclear 27.2 3.9E+02 0.0085 35.1 10.8 81 823-904 806-888 (1018)
435 PF10498 IFT57: Intra-flagella 27.1 3.8E+02 0.0081 31.6 10.2 45 860-904 267-311 (359)
436 PF05384 DegS: Sensor protein 27.0 5.2E+02 0.011 26.8 10.1 71 826-903 76-149 (159)
437 TIGR00984 3a0801s03tim44 mitoc 27.0 2.1E+02 0.0045 33.9 8.0 68 826-903 4-72 (378)
438 COG1340 Uncharacterized archae 26.9 3.7E+02 0.0079 30.7 9.6 48 830-877 40-87 (294)
439 KOG0288 WD40 repeat protein Ti 26.9 4.4E+02 0.0094 31.4 10.3 72 831-902 27-105 (459)
440 PF12128 DUF3584: Protein of u 26.9 2.4E+02 0.0051 38.7 9.8 42 831-872 600-641 (1201)
441 PF03920 TLE_N: Groucho/TLE N- 26.8 1.4E+02 0.0029 30.0 5.5 37 832-868 24-60 (135)
442 TIGR02977 phageshock_pspA phag 26.7 3.5E+02 0.0075 29.4 9.3 49 831-881 99-147 (219)
443 PF15410 PH_9: Pleckstrin homo 26.7 2.1E+02 0.0045 27.9 6.9 36 86-122 82-117 (119)
444 KOG2991 Splicing regulator [RN 26.7 94 0.002 34.2 4.7 43 835-877 268-310 (330)
445 PF14357 DUF4404: Domain of un 26.6 72 0.0016 29.5 3.4 61 836-903 2-62 (85)
446 PF10828 DUF2570: Protein of u 26.5 5.9E+02 0.013 24.5 10.3 39 836-874 23-61 (110)
447 TIGR03545 conserved hypothetic 26.3 2.6E+02 0.0056 34.9 9.1 80 823-902 174-262 (555)
448 PF13870 DUF4201: Domain of un 26.3 3.6E+02 0.0077 28.1 9.1 33 839-871 43-75 (177)
449 PF07716 bZIP_2: Basic region 26.3 1.6E+02 0.0035 24.5 5.2 27 839-865 26-52 (54)
450 PRK02119 hypothetical protein; 26.2 1.7E+02 0.0036 26.4 5.5 53 836-902 7-59 (73)
451 KOG4460 Nuclear pore complex, 26.1 4.7E+02 0.01 32.2 10.5 70 833-902 561-645 (741)
452 KOG1850 Myosin-like coiled-coi 26.1 5.6E+02 0.012 29.4 10.6 71 827-898 133-222 (391)
453 KOG0804 Cytoplasmic Zn-finger 25.9 3.9E+02 0.0085 32.1 9.8 20 884-903 432-451 (493)
454 KOG4001 Axonemal dynein light 25.9 3.3E+02 0.0071 29.2 8.3 61 838-898 185-249 (259)
455 TIGR03495 phage_LysB phage lys 25.6 4.6E+02 0.01 26.5 9.1 40 836-875 38-77 (135)
456 PRK15396 murein lipoprotein; P 25.5 2.5E+02 0.0055 25.6 6.6 37 835-871 29-65 (78)
457 PF06632 XRCC4: DNA double-str 25.5 6.6E+02 0.014 29.4 11.7 75 827-901 126-208 (342)
458 PRK05759 F0F1 ATP synthase sub 25.2 7.1E+02 0.015 25.1 11.1 15 839-853 46-60 (156)
459 PRK06800 fliH flagellar assemb 25.2 7.7E+02 0.017 26.2 10.7 74 829-902 43-121 (228)
460 COG4942 Membrane-bound metallo 25.2 4.9E+02 0.011 31.2 10.6 13 1038-1050 394-406 (420)
461 PF12732 YtxH: YtxH-like prote 25.1 3.6E+02 0.0078 23.9 7.6 27 830-856 25-51 (74)
462 PRK06397 V-type ATP synthase s 25.1 6E+02 0.013 24.2 10.2 74 829-904 15-93 (111)
463 TIGR02169 SMC_prok_A chromosom 25.1 3.3E+02 0.0073 36.7 10.8 7 90-96 24-30 (1164)
464 KOG2129 Uncharacterized conser 25.0 4.1E+02 0.0088 31.5 9.5 25 825-849 247-271 (552)
465 TIGR02338 gimC_beta prefoldin, 24.9 2.2E+02 0.0048 27.3 6.7 43 830-872 66-108 (110)
466 PF10073 DUF2312: Uncharacteri 24.9 2.9E+02 0.0062 25.0 6.6 47 845-891 4-50 (74)
467 PF07407 Seadorna_VP6: Seadorn 24.8 1.6E+02 0.0034 33.7 6.1 27 835-861 36-62 (420)
468 TIGR01010 BexC_CtrB_KpsE polys 24.8 3.5E+02 0.0076 31.5 9.6 26 879-904 241-266 (362)
469 PF05508 Ran-binding: RanGTP-b 24.8 3.5E+02 0.0075 31.0 8.9 55 849-904 81-135 (302)
470 PF04899 MbeD_MobD: MbeD/MobD 24.8 5.1E+02 0.011 23.2 8.6 59 842-903 7-65 (70)
471 KOG4005 Transcription factor X 24.8 1.8E+02 0.0039 31.8 6.3 37 828-864 101-137 (292)
472 PRK03947 prefoldin subunit alp 24.7 1.5E+02 0.0033 29.6 5.7 42 829-870 92-133 (140)
473 PRK06231 F0F1 ATP synthase sub 24.7 7E+02 0.015 26.9 11.1 10 891-900 163-172 (205)
474 cd07627 BAR_Vps5p The Bin/Amph 24.7 4.4E+02 0.0096 28.5 9.7 36 835-870 119-161 (216)
475 COG1196 Smc Chromosome segrega 24.7 3.2E+02 0.007 37.3 10.5 22 845-866 404-425 (1163)
476 COG1730 GIM5 Predicted prefold 24.7 2.6E+02 0.0056 28.6 7.2 48 823-870 93-140 (145)
477 KOG0317 Predicted E3 ubiquitin 24.6 16 0.00035 40.8 -1.4 45 636-694 240-284 (293)
478 PF13600 DUF4140: N-terminal d 24.6 85 0.0018 29.7 3.7 31 837-867 69-99 (104)
479 PF10226 DUF2216: Uncharacteri 24.6 8.8E+02 0.019 25.9 12.9 71 835-906 59-144 (195)
480 KOG1029 Endocytic adaptor prot 24.5 1.7E+02 0.0037 37.1 6.9 15 889-903 488-502 (1118)
481 PF10234 Cluap1: Clusterin-ass 24.5 3.5E+02 0.0076 30.5 8.9 67 823-899 168-237 (267)
482 PF14643 DUF4455: Domain of un 24.4 2E+02 0.0044 35.1 7.7 51 853-909 80-130 (473)
483 PRK09343 prefoldin subunit bet 24.4 2.7E+02 0.0059 27.4 7.2 38 835-872 75-112 (121)
484 PRK06569 F0F1 ATP synthase sub 24.3 5.5E+02 0.012 26.6 9.5 19 839-857 52-70 (155)
485 PF04849 HAP1_N: HAP1 N-termin 24.3 2.9E+02 0.0063 31.7 8.3 79 825-903 161-250 (306)
486 PHA02047 phage lambda Rz1-like 24.2 2.1E+02 0.0045 27.1 5.8 30 838-867 34-63 (101)
487 PF03961 DUF342: Protein of un 24.2 2.1E+02 0.0045 34.6 7.8 70 827-899 330-408 (451)
488 PF08826 DMPK_coil: DMPK coile 24.2 3.3E+02 0.0072 23.7 6.7 14 832-845 12-25 (61)
489 COG3122 Uncharacterized protei 24.2 2.6E+02 0.0056 29.4 7.1 14 853-866 86-99 (215)
490 TIGR00219 mreC rod shape-deter 24.1 1.4E+02 0.0031 33.8 6.0 18 836-853 71-88 (283)
491 PLN00203 glutamyl-tRNA reducta 24.1 3.4E+02 0.0073 33.6 9.6 74 827-900 405-491 (519)
492 PRK04778 septation ring format 24.1 4.1E+02 0.0089 33.2 10.5 20 827-846 320-339 (569)
493 PF14803 Nudix_N_2: Nudix N-te 24.1 51 0.0011 25.1 1.6 29 661-691 2-30 (34)
494 PF05082 Rop-like: Rop-like; 24.1 2.5E+02 0.0053 24.9 5.9 26 835-860 6-31 (66)
495 PF08287 DASH_Spc19: Spc19; I 24.0 1.1E+02 0.0024 31.5 4.5 47 821-867 58-104 (153)
496 COG2919 Septum formation initi 24.0 2.5E+02 0.0055 27.4 6.9 52 827-878 46-97 (117)
497 PHA02562 46 endonuclease subun 23.9 4.3E+02 0.0093 32.6 10.7 79 825-903 168-246 (562)
498 PF05622 HOOK: HOOK protein; 23.8 26 0.00057 44.9 0.0 78 826-903 276-379 (713)
499 PRK00736 hypothetical protein; 23.8 3.1E+02 0.0068 24.2 6.7 47 843-903 3-49 (68)
500 PF05191 ADK_lid: Adenylate ki 23.7 23 0.00051 27.3 -0.3 36 651-698 1-36 (36)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.2e-45 Score=412.13 Aligned_cols=362 Identities=25% Similarity=0.452 Sum_probs=291.6
Q ss_pred ccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccC--CCCCEEEEEecCCeEEEEEcCCcEEEEeCCCC
Q 001504 235 DCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESN--VVLDVHHIACGVRHAALVTRQGEVFTWGEESG 312 (1065)
Q Consensus 235 al~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~d~~~P~~l~~~--~~~~V~~Ia~G~~Hs~~LT~dG~Vy~WG~N~~ 312 (1065)
.....++||+||.| ..++||.|.+. ..+..|...... ....|++++||..|+++|+.||.||+||.|..
T Consensus 63 ~~~~~~~v~~~Gsn-~~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~ 133 (476)
T COG5184 63 LLVKMASVYSWGSN-GMNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD 133 (476)
T ss_pred hhhheeeeEEEecC-cceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence 56777899999999 78999999842 223455554443 56889999999999999999999999999999
Q ss_pred CccCCCCC----------------cceeccEEeec----cCCCCEEEEEeCCCeEEEEEeCCcEEEeCCCCCCCCcCCCC
Q 001504 313 GRLGHGVG----------------KDIVQPHLLES----LTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHG 372 (1065)
Q Consensus 313 GqLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g 372 (1065)
|+||.... .....|..|.. ....+|++++||++++++|+++|+||.||.+ ..+.++.+
T Consensus 134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~--r~~e~~~g 211 (476)
T COG5184 134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF--RCGELGQG 211 (476)
T ss_pred cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCc--cccccccc
Confidence 99998661 12457777776 2234799999999999999999999999998 45555555
Q ss_pred CC--cc----eeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCCCccCCCCCCCcccceeecccccc-eEE
Q 001504 373 TD--VS----HWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGL-RTI 445 (1065)
Q Consensus 373 ~~--~~----~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~-~I~ 445 (1065)
.. .. +.+|.+++ ...|+++++|..|.++|+++|+||+||+|.+||||....+....+..+..+..+ .|+
T Consensus 212 ~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~ 287 (476)
T COG5184 212 SYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIK 287 (476)
T ss_pred cccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhh
Confidence 22 22 24555554 457999999999999999999999999999999999887776666666544332 368
Q ss_pred EEecCCceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCC----CCcccceEecccCCCCEEEEEecCCEEEEEe
Q 001504 446 AVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDK----EPRLKPTCVPALIDYNFHKVACGHSLTVGLT 521 (1065)
Q Consensus 446 ~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT 521 (1065)
.|+||.+|++|| +.+|++|+||.|.+||||.+.. .....|.....+.+..|..|++|..|+++|.
T Consensus 288 ~vacG~~h~~al-----------~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~ 356 (476)
T COG5184 288 YVACGKDHSLAL-----------DEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILR 356 (476)
T ss_pred hcccCcceEEEE-----------cCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEe
Confidence 899999999999 4599999999999999999822 1245566666777788999999999999999
Q ss_pred cCCcEEEEeCCCCCCCCCCCCCC---CcceeeecccCCCCeeEEEEcCCcceeeecCCeEEEEeCCCCCCCCCCCCC-CC
Q 001504 522 TSGHVFTMGSTVYGQLGNPNADG---KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVE-DR 597 (1065)
Q Consensus 522 ~dG~Vy~wGsN~~GQLG~~~~~~---~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLT~dG~VytWG~n~~GQLG~G~~~-~~ 597 (1065)
.+|.||+||.+..+|||.+.... ..|..+. ...++.+|+||.+|.++.+.+|+||.||.|++|+||.|+.. +.
T Consensus 357 ~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~ 433 (476)
T COG5184 357 KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADV 433 (476)
T ss_pred cCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhc
Confidence 99999999999999999976321 1222222 13579999999999999999999999999999999999754 55
Q ss_pred cccEEecc--ccCccEEEEecCCCccceEe
Q 001504 598 KTPALVEA--LKDRHVKYIACGSNYSAAIC 625 (1065)
Q Consensus 598 ~~P~~V~~--l~~~~V~~IacG~~hT~al~ 625 (1065)
..|+++.. +....++..-||.++.+...
T Consensus 434 ~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 434 LVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred cccccccccccCCCceEEeccCcceEEEec
Confidence 77888874 67778888888888776654
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.8e-40 Score=369.18 Aligned_cols=329 Identities=27% Similarity=0.514 Sum_probs=269.0
Q ss_pred CCeEEEEEcCCcEEEEeCCCCCccCCCCCcce-eccEEeecc--CCCCEEEEEeCCCeEEEEEeCCcEEEeCCCCCCCCc
Q 001504 292 VRHAALVTRQGEVFTWGEESGGRLGHGVGKDI-VQPHLLESL--TMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGL 368 (1065)
Q Consensus 292 ~~Hs~~LT~dG~Vy~WG~N~~GqLG~g~~~~~-~~P~~V~~l--~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~Gq 368 (1065)
..|...++.-+.||+||.|..++||.|.+... ..|+++... ....|++++||..|+++|+.||.||+||.| ..|+
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N--~~G~ 135 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDN--DDGA 135 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccC--cccc
Confidence 45666889999999999999999999987655 889888876 567899999999999999999999999999 7899
Q ss_pred CCCCCC----------------cceeeeeeecC---CCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCCCccCCCCCCC
Q 001504 369 LGHGTD----------------VSHWIPKRISG---PLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKN 429 (1065)
Q Consensus 369 LG~g~~----------------~~~~~P~~V~~---~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g~~~~ 429 (1065)
||.... ....+|.+|+. .....+|++++||.+++++|+++|.||+||.+..+.++.+....
T Consensus 136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence 997661 23567888875 22345899999999999999999999999999988888884332
Q ss_pred ------cccceeecccccceEEEEecCCceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCCCcccceEeccc-
Q 001504 430 ------VSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL- 502 (1065)
Q Consensus 430 ------~~~P~~V~~l~~~~I~~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l- 502 (1065)
..+|..+. ...|+++++|..|.++| +++|++|+||+|.+||||....+....+..+..+
T Consensus 216 s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~l-----------t~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f 281 (476)
T COG5184 216 SQKTSIQFTPLKVP---KKAIVQLAAGADHLIAL-----------TNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF 281 (476)
T ss_pred cccceeeeeeeecC---chheeeeccCCceEEEE-----------ecCCcEEEecCCcccccCCchhhhcccccccCChh
Confidence 23444443 45799999999999999 4599999999999999999887776666666533
Q ss_pred CCCCEEEEEecCCEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeee-----cccCCCCeeEEEEcCCcceeeecCCe
Q 001504 503 IDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVE-----DKLAGESVEEIACGAYHVAVLTSRNE 577 (1065)
Q Consensus 503 ~~~~I~~Ia~G~~htvaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~-----~~l~~~~V~~Ia~G~~Hs~aLT~dG~ 577 (1065)
.-..|..|+||.+|++||+++|+||+||.|.+||||.+ .+...+.... ..+.+..|..|++|..|.++|..+|.
T Consensus 282 ~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~ 360 (476)
T COG5184 282 AIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGT 360 (476)
T ss_pred hhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccceeeccccccccCCCceEEEEecCcceEEEEecCce
Confidence 23457899999999999999999999999999999998 4333322221 12445568999999999999999999
Q ss_pred EEEEeCCCCCCCCCCC--CCCCcccEEeccccCccEEEEecCCCccceEeeeeccccccccccccccccccccccccc
Q 001504 578 VYTWGKGANGRLGHGD--VEDRKTPALVEALKDRHVKYIACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHN 653 (1065)
Q Consensus 578 VytWG~n~~GQLG~G~--~~~~~~P~~V~~l~~~~V~~IacG~~hT~al~~~~wvs~~d~s~C~~C~~~F~f~rkrh~ 653 (1065)
||.||++..||||..+ ..+...|+++.... ++.+|+||..|+++.+ .|+.+|.|+...|.
T Consensus 361 l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~--~~~~v~~gt~~~~~~t--------------~~gsvy~wG~ge~g 422 (476)
T COG5184 361 LYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI--KLEQVACGTHHNIART--------------DDGSVYSWGWGEHG 422 (476)
T ss_pred EEEecCCccccccCcccceeecCCcccccccc--ceEEEEecCccceeec--------------cCCceEEecCchhh
Confidence 9999999999999998 66677777776443 6999999999999985 34456666665554
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.8e-39 Score=340.48 Aligned_cols=336 Identities=26% Similarity=0.470 Sum_probs=287.4
Q ss_pred cccccccccccCCCCCEEEEEec--CCeEEEEEcCCcEEEEeCCCCCccCCCCCcceeccEEeeccCCCCEEEEEeCCCe
Q 001504 269 ADVLLPRPLESNVVLDVHHIACG--VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFH 346 (1065)
Q Consensus 269 ~d~~~P~~l~~~~~~~V~~Ia~G--~~Hs~~LT~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~h 346 (1065)
.++.-|.++......+|..|+.| .-|+++|+-+|+.|+||.|..||||+++......|+.|..|...+|++.+||++|
T Consensus 42 ~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnH 121 (443)
T KOG1427|consen 42 GNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNH 121 (443)
T ss_pred cccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCc
Confidence 36677888888888889999877 5799999999999999999999999998889999999999999999999999999
Q ss_pred EEEEEeCCcEEEeCCCCCCCCcCCCCCCcce-eeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCCCccCCC
Q 001504 347 TCAVTMAGELYTWGDGTHNAGLLGHGTDVSH-WIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHG 425 (1065)
Q Consensus 347 s~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~-~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g 425 (1065)
+++||++|.||.+|.| .+||||.++.... ..|..+. .-+..|+.|+||..+++.|+..+.|.++|.-.||||||+
T Consensus 122 Tl~ltdtG~v~afGeN--K~GQlGlgn~~~~v~s~~~~~--~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~ 197 (443)
T KOG1427|consen 122 TLVLTDTGQVLAFGEN--KYGQLGLGNAKNEVESTPLPC--VVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHG 197 (443)
T ss_pred EEEEecCCcEEEeccc--ccccccccccccccccCCCcc--ccCccceeeccccceEEEeecccceeecCCccccccccC
Confidence 9999999999999999 8899999986542 2222211 124479999999999999999999999999999999998
Q ss_pred CCC--------------CcccceeecccccceEEEEecCCceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCC
Q 001504 426 DRK--------------NVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKE 491 (1065)
Q Consensus 426 ~~~--------------~~~~P~~V~~l~~~~I~~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~ 491 (1065)
... ....|..|..+.++.|++++||.+||+++ .++++||+||.+.||+|||...+
T Consensus 198 td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvav-----------d~nkrVysWGFGGyGRLGHaEqK 266 (443)
T KOG1427|consen 198 TDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAV-----------DKNKRVYSWGFGGYGRLGHAEQK 266 (443)
T ss_pred cchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeee-----------cCCccEEEeccccccccccccch
Confidence 542 23457778889999999999999999999 45999999999999999999999
Q ss_pred CcccceEecccC--CCCEEEEEecCCEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeeEEEEcCCcc
Q 001504 492 PRLKPTCVPALI--DYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHV 569 (1065)
Q Consensus 492 ~~~~P~~V~~l~--~~~I~~Ia~G~~htvaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Hs 569 (1065)
+...|..+..+. +.--.++.||+..++++.+-|.+|.||.+.. ...+..+|.++.+ +.+.++..|.||..|.
T Consensus 267 DEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-----~ge~~mypkP~~d-lsgwnl~~~~~~~~h~ 340 (443)
T KOG1427|consen 267 DEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-----NGEDWMYPKPMMD-LSGWNLRWMDSGSMHH 340 (443)
T ss_pred hhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc-----CcccccCCCchhh-cCCccCCCcCccceee
Confidence 999999888654 3445689999999999999999999997653 2345567877775 6788999999999998
Q ss_pred eeeecCCeEEEEeCCCCCCCCCCC--CCCCcccEEeccccCccEEEEecCCCccceEee
Q 001504 570 AVLTSRNEVYTWGKGANGRLGHGD--VEDRKTPALVEALKDRHVKYIACGSNYSAAICL 626 (1065)
Q Consensus 570 ~aLT~dG~VytWG~n~~GQLG~G~--~~~~~~P~~V~~l~~~~V~~IacG~~hT~al~~ 626 (1065)
++ ..|.....||...+|.++-|. +.....|..|..|.+.+|..|+||..|+++|..
T Consensus 341 ~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd 398 (443)
T KOG1427|consen 341 FV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVD 398 (443)
T ss_pred ee-cccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEc
Confidence 76 455678999999888766554 345578999999999999999999999999964
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=305.07 Aligned_cols=304 Identities=28% Similarity=0.455 Sum_probs=253.9
Q ss_pred CCcEEEEeCCCCCccCCCC---CcceeccEEeeccCCCCEEEEEeC--CCeEEEEEeCCcEEEeCCCCCCCCcCCCCCCc
Q 001504 301 QGEVFTWGEESGGRLGHGV---GKDIVQPHLLESLTMTSVDFVTCG--EFHTCAVTMAGELYTWGDGTHNAGLLGHGTDV 375 (1065)
Q Consensus 301 dG~Vy~WG~N~~GqLG~g~---~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~ 375 (1065)
-|++..+|.-.+.+.|--+ ..+...|+++..+.+.+|..|+.| ..|+++|+-+|+.|+||.| ..||||+++..
T Consensus 19 ~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRN--ekGQLGhgD~k 96 (443)
T KOG1427|consen 19 GGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRN--EKGQLGHGDMK 96 (443)
T ss_pred CccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccC--ccCccCccchh
Confidence 4677777766665555433 235678999999999999999977 6899999999999999999 88999999888
Q ss_pred ceeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCCCccCCCCCCCcccceeecccccceEEEEecCCceEE
Q 001504 376 SHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTA 455 (1065)
Q Consensus 376 ~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~ht~ 455 (1065)
....|+.|++ +...+|++.+||.+|+++||++|+||+||.|.+||||+|+.....+-..+....+..|+.|+||..+++
T Consensus 97 ~~e~Ptvi~g-L~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv 175 (443)
T KOG1427|consen 97 QRERPTVISG-LSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTV 175 (443)
T ss_pred hccCCchhhh-hhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccceEE
Confidence 8888998885 567899999999999999999999999999999999999865433322233344557999999999999
Q ss_pred EEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCC--------------CcccceEecccCCCCEEEEEecCCEEEEEe
Q 001504 456 AVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKE--------------PRLKPTCVPALIDYNFHKVACGHSLTVGLT 521 (1065)
Q Consensus 456 aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~--------------~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT 521 (1065)
.| +..+.+.++|.-.||||||+... ....|..|..+....|++++||.+||+|++
T Consensus 176 ~l-----------~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd 244 (443)
T KOG1427|consen 176 WL-----------SSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD 244 (443)
T ss_pred Ee-----------ecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec
Confidence 99 45889999999999999998542 234577777888899999999999999999
Q ss_pred cCCcEEEEeCCCCCCCCCC-CCCCCcceeeecc-cCCCCeeEEEEcCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcc
Q 001504 522 TSGHVFTMGSTVYGQLGNP-NADGKLPCLVEDK-LAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKT 599 (1065)
Q Consensus 522 ~dG~Vy~wGsN~~GQLG~~-~~~~~~P~~v~~~-l~~~~V~~Ia~G~~Hs~aLT~dG~VytWG~n~~GQLG~G~~~~~~~ 599 (1065)
.+++||+||-..||.||.. +.+...|+++... ..+.--..+.||+..++++.+-|.+|.||.+.+ +.++...
T Consensus 245 ~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~my 318 (443)
T KOG1427|consen 245 KNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMY 318 (443)
T ss_pred CCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccC
Confidence 9999999999999999986 4566778877652 234556789999999999999999999999864 2356778
Q ss_pred cEEeccccCccEEEEecCCCccceE
Q 001504 600 PALVEALKDRHVKYIACGSNYSAAI 624 (1065)
Q Consensus 600 P~~V~~l~~~~V~~IacG~~hT~al 624 (1065)
|.++..+.+.++..+.||..|.++=
T Consensus 319 pkP~~dlsgwnl~~~~~~~~h~~v~ 343 (443)
T KOG1427|consen 319 PKPMMDLSGWNLRWMDSGSMHHFVG 343 (443)
T ss_pred CCchhhcCCccCCCcCccceeeeec
Confidence 9999999999999999999886654
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=1.1e-25 Score=261.61 Aligned_cols=302 Identities=24% Similarity=0.376 Sum_probs=231.1
Q ss_pred EEEcCCcEEEEeCCCCCccCCCCCcceeccEEeeccCC--CCEEEEEeCCCeEEEEEeCCcEEEeCCCCCCCCcCCCCCC
Q 001504 297 LVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTM--TSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTD 374 (1065)
Q Consensus 297 ~LT~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~--~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~ 374 (1065)
+++...+||+||.|.+.-||+|.......|..|..+.. .-+.+|+.+.+|++++++.|+||++|.+ ..|.||+|..
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gde 214 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGDE 214 (1267)
T ss_pred ccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCcc
Confidence 56777899999999999999999999999999988753 3478899999999999999999999999 7899999988
Q ss_pred cceeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCCCccCCCCC-CCcccceeecc--cccc-eEEEEecC
Q 001504 375 VSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDR-KNVSYPREVES--LSGL-RTIAVACG 450 (1065)
Q Consensus 375 ~~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g~~-~~~~~P~~V~~--l~~~-~I~~IacG 450 (1065)
.....|++|++ +.+.+|.+|++...|+++||.+|-||+||.|.++|||..+. .....|.+|.. +.+. .|+.|++|
T Consensus 215 q~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 88899999997 67889999999999999999999999999999999999765 34556766654 2343 68999999
Q ss_pred CceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCCC-cccceEecccCCCCEEEEEecCCEEEEEecCCcEEEE
Q 001504 451 VWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEP-RLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTM 529 (1065)
Q Consensus 451 ~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~~-~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~w 529 (1065)
..|+++.+ +..||+||.|. ||||..+... ...|..+.. ....|.-|+|....|++++++|.+|++
T Consensus 294 ~~hsVawt------------~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ 359 (1267)
T KOG0783|consen 294 KSHSVAWT------------DTDVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAF 359 (1267)
T ss_pred cceeeeee------------cceEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEE
Confidence 99999995 68999999975 9999877644 456755532 345799999999999999999999998
Q ss_pred eCCCCCCCCCCCCCCCcceeeec-c--cCCCCeeEEEEcCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcccEEeccc
Q 001504 530 GSTVYGQLGNPNADGKLPCLVED-K--LAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEAL 606 (1065)
Q Consensus 530 GsN~~GQLG~~~~~~~~P~~v~~-~--l~~~~V~~Ia~G~~Hs~aLT~dG~VytWG~n~~GQLG~G~~~~~~~P~~V~~l 606 (1065)
-.-....+.....+.+ -..|.+ . +....+.+..+...-.++||+-|+||.|-.+..-. +.-..+|..+-
T Consensus 360 ady~~~k~~~n~~~lk-s~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~~-- 431 (1267)
T KOG0783|consen 360 ADYNQVKLPFNVDFLK-SLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRIF-- 431 (1267)
T ss_pred ecccceecCcchhccc-eeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeeecccceee--
Confidence 7644333322211111 122222 1 12234666667777789999999999998654211 11223344332
Q ss_pred cCccEEEEecCCCccceEee
Q 001504 607 KDRHVKYIACGSNYSAAICL 626 (1065)
Q Consensus 607 ~~~~V~~IacG~~hT~al~~ 626 (1065)
.|.+|+--.+..++++.
T Consensus 432 ---~isdIa~~~N~~~~~t~ 448 (1267)
T KOG0783|consen 432 ---EISDIAWTANSLILCTR 448 (1267)
T ss_pred ---ehhhhhhccceEEEEec
Confidence 35566666665555543
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=6.8e-25 Score=255.03 Aligned_cols=308 Identities=24% Similarity=0.334 Sum_probs=226.3
Q ss_pred cccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEecCCeEEEEEcCCcEEEEeCCCCC
Q 001504 234 DDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGG 313 (1065)
Q Consensus 234 ~al~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~d~~~P~~l~~~~~~~V~~Ia~G~~Hs~~LT~dG~Vy~WG~N~~G 313 (1065)
-++|.-.|||+||.| .+..||.|..++ ...+.+.|.+. ..++-+.+|+.+..|++++++.|+||++|.+.+|
T Consensus 136 ~~~d~pndvy~wG~N-~N~tLGign~~~-~~~Pe~Vdlf~------~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GG 207 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTN-VNNTLGIGNGKE-PSSPERVDLFK------TSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGG 207 (1267)
T ss_pred cccCCccceeEeccc-ccccccccCCCC-CCChHHhHHHH------hccHHHHHHHHhhceeeEecCCCcEEEeccCCCC
Confidence 356777899999999 788999998432 22222333222 2244467899999999999999999999999999
Q ss_pred ccCCCCCcceeccEEeeccCCCCEEEEEeCCCeEEEEEeCCcEEEeCCCCCCCCcCCCCCCcc-eeeeeeecCC-CCCC-
Q 001504 314 RLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVS-HWIPKRISGP-LEGL- 390 (1065)
Q Consensus 314 qLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~-~~~P~~V~~~-l~~~- 390 (1065)
+||+|+......|++|+.|.+.+|.+|++...|+++||.+|-||+||.| ..+|||..+... ...|..|... +++.
T Consensus 208 RlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN--~~hqLG~~~~~~~~~~p~qI~a~r~kg~~ 285 (1267)
T KOG0783|consen 208 RLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLN--GSHQLGLSNDELKKDDPIQITARRIKGFK 285 (1267)
T ss_pred ccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecC--cccccCCcCchhhcCchhhhhhHhhcchh
Confidence 9999988889999999999999999999999999999999999999999 789999876643 3345444311 1222
Q ss_pred cEEEEEecCCeEEEEecCCcEEEEeCCCCCccCCCCCC-CcccceeecccccceEEEEecCCceEEEEEEeeeecccccc
Q 001504 391 QVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRK-NVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASV 469 (1065)
Q Consensus 391 ~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g~~~-~~~~P~~V~~l~~~~I~~IacG~~ht~aL~ev~~~~s~~~t 469 (1065)
.|+.|++|..|+++.|+. .||+||.|. ||||..+.. .+..|+.+..+ ...|..|+|....|+++++
T Consensus 286 ~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~---------- 352 (1267)
T KOG0783|consen 286 QIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQ---------- 352 (1267)
T ss_pred hhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEec----------
Confidence 799999999999999954 699999984 999987664 45678666433 3478999999999999954
Q ss_pred CCCeEEEecCCCCCCCCCCCCCCcccceEecc----cCCCCEEEEEecCCEEEEEecCCcEEEEeCCCCCCCCCCCCCCC
Q 001504 470 SSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPA----LIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGK 545 (1065)
Q Consensus 470 ~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~----l~~~~I~~Ia~G~~htvaLT~dG~Vy~wGsN~~GQLG~~~~~~~ 545 (1065)
++.+|++-+-..-.+ ..+...+.-..|.. +...++.+..+...--++||+-|+||.|-+++.-.- .-..
T Consensus 353 -~~~i~~~ady~~~k~--~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~----~c~f 425 (1267)
T KOG0783|consen 353 -NNSIIAFADYNQVKL--PFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT----SCKF 425 (1267)
T ss_pred -CCcEEEEecccceec--CcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee----eeec
Confidence 889998875432222 22222223333321 111345566677778899999999999997642110 0111
Q ss_pred cceeeecccCCCCeeEEEEcCCcceeeecCCe
Q 001504 546 LPCLVEDKLAGESVEEIACGAYHVAVLTSRNE 577 (1065)
Q Consensus 546 ~P~~v~~~l~~~~V~~Ia~G~~Hs~aLT~dG~ 577 (1065)
.|.++ ..|.+|+--.+..+++|.||.
T Consensus 426 tp~r~------~~isdIa~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 426 TPLRI------FEISDIAWTANSLILCTRDGC 451 (1267)
T ss_pred cccee------eehhhhhhccceEEEEecCcc
Confidence 23222 346688877888999999993
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.9e-20 Score=219.82 Aligned_cols=282 Identities=22% Similarity=0.312 Sum_probs=196.9
Q ss_pred CCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEecCCeEEEE--EcCCcEEEEeCCCCCc
Q 001504 237 DALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALV--TRQGEVFTWGEESGGR 314 (1065)
Q Consensus 237 ~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~d~~~P~~l~~~~~~~V~~Ia~G~~Hs~~L--T~dG~Vy~WG~N~~Gq 314 (1065)
...|+||.-|.....|..-.|. ..+...+| ..|++|+.|-....++ ..+|-++.-|... +
T Consensus 495 a~sGKvYYaGn~t~~Gl~e~G~--------nWmEL~l~--------~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k--~ 556 (3738)
T KOG1428|consen 495 ARSGKVYYAGNGTRFGLFETGN--------NWMELCLP--------EPIVQISVGIDTIMFRSGAGHGWIASVDDKK--R 556 (3738)
T ss_pred hcCccEEEecCccEEeEEccCC--------ceEEecCC--------CceEEEEeccchhheeeccCcceEEeccCcc--c
Confidence 5679999999885555444443 23333444 3688999998766555 4455566555322 1
Q ss_pred cCCCCCcceeccEEeeccCCCCEEEEEeCCCeE-EEEEeCCcEEEeCCCCCCCCcCCCCCCcceeeeeeecCCCCCCcEE
Q 001504 315 LGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHT-CAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVA 393 (1065)
Q Consensus 315 LG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs-~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv 393 (1065)
.| .-.++......+|+.|. |..|. -++.++|++|+.|...- .....-..+. .+++.-|.
T Consensus 557 ~~--------~~Rr~~P~n~rKIv~v~-~s~~VY~~vSenGkifM~G~~tm----------~~n~SSqmln-~L~~~~is 616 (3738)
T KOG1428|consen 557 NG--------RLRRLVPSNRRKIVHVC-ASGHVYGYVSENGKIFMGGLHTM----------RVNVSSQMLN-GLDNVMIS 616 (3738)
T ss_pred cc--------chhhcCCCCcceeEEEe-eeeEEEEEEccCCeEEeecceeE----------EecchHHHhh-ccccceee
Confidence 11 11111112335677764 44444 46889999999986521 0000112222 46778899
Q ss_pred EEEecCCeEEEEecCCcEEEEeCCCCCccCCCCCCCc-------------------------------------------
Q 001504 394 SVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNV------------------------------------------- 430 (1065)
Q Consensus 394 ~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g~~~~~------------------------------------------- 430 (1065)
+++.|..|.++++.+|.||+||-|..+|+|.-.....
T Consensus 617 slAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC 696 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVAC 696 (3738)
T ss_pred hhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccc
Confidence 9999999999999999999999999999996211000
Q ss_pred --------------------------------------------------------ccceeec---ccccceEEEEecCC
Q 001504 431 --------------------------------------------------------SYPREVE---SLSGLRTIAVACGV 451 (1065)
Q Consensus 431 --------------------------------------------------------~~P~~V~---~l~~~~I~~IacG~ 451 (1065)
..|..|. ...++++.+|+||.
T Consensus 697 ~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~ 776 (3738)
T KOG1428|consen 697 GRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGN 776 (3738)
T ss_pred ccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccC
Confidence 0011111 12356899999999
Q ss_pred ceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCCCcccceEecccCCCCEEEEEecCCEEEEEecCCcEEEEeC
Q 001504 452 WHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGS 531 (1065)
Q Consensus 452 ~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wGs 531 (1065)
+|+++|.+ +++||++|.|.+||||+|+...+..|+.|..+.+..|++|++|.+||+++..||.||+||.
T Consensus 777 ~HtVlL~s-----------d~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGa 845 (3738)
T KOG1428|consen 777 FHTVLLAS-----------DRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGA 845 (3738)
T ss_pred ceEEEEec-----------CCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEecc
Confidence 99999954 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC----Ccceeeeccc--CCCCeeEEEEcCC
Q 001504 532 TVYGQLGNPNADG----KLPCLVEDKL--AGESVEEIACGAY 567 (1065)
Q Consensus 532 N~~GQLG~~~~~~----~~P~~v~~~l--~~~~V~~Ia~G~~ 567 (1065)
-..|||+.+..+. ..|.++...- .+.+...|.+.++
T Consensus 846 F~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGD 887 (3738)
T KOG1428|consen 846 FGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGD 887 (3738)
T ss_pred ccCccccCccccccccccCCCcCCCCCccccccceeeccCCC
Confidence 9999999875443 3455555421 2344555655443
No 8
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.82 E-value=1.7e-20 Score=181.61 Aligned_cols=106 Identities=24% Similarity=0.478 Sum_probs=97.2
Q ss_pred HHHHHhcCCeEEEEecCCcCeeeeEEEeCCCCEEEEecCC--CCcccccceeeecccccCChhHhhhcCC----CCCCce
Q 001504 17 ALIALKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSS--GERSLKLASVSKIIPGQRTAVFQRYLRP----EKDYLS 90 (1065)
Q Consensus 17 ~l~~L~~Gt~l~K~~~~~kpk~r~f~L~~d~~~l~W~~~~--~~~~~~l~~I~eI~~G~~t~~f~r~~~~----~~~~~~ 90 (1065)
++.+|++|+.|+|+.++++++.|+|+|+++...|.|.+.+ ..+.|+|++|+|||.|+.++.|++.... ..+++|
T Consensus 2 v~~~L~~G~~~~K~~~~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~ 81 (115)
T cd01248 2 VPEALQRGSVFIKWDDTSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERC 81 (115)
T ss_pred chHHHhCCCEEEEEcCCCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccE
Confidence 5688999999999988889999999999999999998766 4678999999999999999999987554 478999
Q ss_pred EEEEEcCC--CceEEEEeCCHHHHHHHHHHHHHH
Q 001504 91 FSLIYNNG--KRSLDLICKDKVEAEVWIAGLKAL 122 (1065)
Q Consensus 91 FSiiy~~~--~rtLDLva~~~~ea~~Wv~GL~~L 122 (1065)
|||||+.+ .++|||||+++++|+.|++||++|
T Consensus 82 fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 82 FTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred EEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 99999988 899999999999999999999986
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.81 E-value=8.6e-19 Score=209.43 Aligned_cols=298 Identities=22% Similarity=0.295 Sum_probs=206.2
Q ss_pred EEEEEecCCeEEEEEcCCcEEEEeCCCCCccCCCCCcceeccEEeeccCCCCEEEEEeCCCeEEEEEe--CCcEEEeCCC
Q 001504 285 VHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTM--AGELYTWGDG 362 (1065)
Q Consensus 285 V~~Ia~G~~Hs~~LT~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~--dG~Vy~WG~n 362 (1065)
-..+-.+...+++-+.+|+||.-|... ++|+-...... ++..-..+|++|+.|-....++.- +|-++.-|+.
T Consensus 481 tv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nW----mEL~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~ 554 (3738)
T KOG1428|consen 481 TVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNW----MELCLPEPIVQISVGIDTIMFRSGAGHGWIASVDDK 554 (3738)
T ss_pred heecccchhhhhhhhcCccEEEecCcc--EEeEEccCCce----EEecCCCceEEEEeccchhheeeccCcceEEeccCc
Confidence 456778888899999999999999754 45543322211 121122689999999887777654 4555555544
Q ss_pred CCCCCcCCCCCCcceeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCCCccCCCCCCCcccceeecccccc
Q 001504 363 THNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGL 442 (1065)
Q Consensus 363 ~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~ 442 (1065)
.. .|.+ .+. .|....+|+.+.+...---.+.++|++|.+|..... .-..-..+..|.+.
T Consensus 555 k~-~~~~------Rr~------~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~ 613 (3738)
T KOG1428|consen 555 KR-NGRL------RRL------VPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNV 613 (3738)
T ss_pred cc-ccch------hhc------CCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccc
Confidence 21 1111 011 134455788886554434567899999999854321 00122345678888
Q ss_pred eEEEEecCCceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCCC------------------------------
Q 001504 443 RTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEP------------------------------ 492 (1065)
Q Consensus 443 ~I~~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~~------------------------------ 492 (1065)
-|.+++.|..|+++++ .+|.||+||-|+.+|.|.-....
T Consensus 614 ~isslAlGKsH~~av~-----------rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~V 682 (3738)
T KOG1428|consen 614 MISSLALGKSHGVAVT-----------RNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSV 682 (3738)
T ss_pred eeehhhccccceeEEE-----------eCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcch
Confidence 9999999999999995 59999999999999998531000
Q ss_pred ---------------------------------------------------------------------cccceEec---
Q 001504 493 ---------------------------------------------------------------------RLKPTCVP--- 500 (1065)
Q Consensus 493 ---------------------------------------------------------------------~~~P~~V~--- 500 (1065)
.+.|..|.
T Consensus 683 Ca~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq 762 (3738)
T KOG1428|consen 683 CAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQ 762 (3738)
T ss_pred hhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeecc
Confidence 00111111
Q ss_pred ccCCCCEEEEEecCCEEEEEecCCcEEEEeCCCCCCCCCCCCCC-CcceeeecccCCCCeeEEEEcCCcceeeecCCeEE
Q 001504 501 ALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADG-KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVY 579 (1065)
Q Consensus 501 ~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wGsN~~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLT~dG~Vy 579 (1065)
..-+.++.+|+||..|+++|.+|++||+||+|.+||||.++... ..|+.|.. +.+..|++|++|.+|++++..||.||
T Consensus 763 ~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsVF 841 (3738)
T KOG1428|consen 763 GPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGSNHTILRANDGSVF 841 (3738)
T ss_pred CCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCCCceEEEecCCcEE
Confidence 11234688999999999999999999999999999999987544 57888864 56778999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCC---CcccEEecccc---CccEEEEecCCCcc
Q 001504 580 TWGKGANGRLGHGDVED---RKTPALVEALK---DRHVKYIACGSNYS 621 (1065)
Q Consensus 580 tWG~n~~GQLG~G~~~~---~~~P~~V~~l~---~~~V~~IacG~~hT 621 (1065)
+||.=..||||..-.+. -..|.+|..+. +.....|.+.++.+
T Consensus 842 TFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss 889 (3738)
T KOG1428|consen 842 TFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSS 889 (3738)
T ss_pred EeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCcc
Confidence 99999999999754332 25688887653 22344454444433
No 10
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=99.72 E-value=3.5e-17 Score=160.24 Aligned_cols=106 Identities=31% Similarity=0.459 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCCeEEEEecCC------cCeeeeEEEeCCCCEEEEecCC---------CCcccccceeeecccccCChhH
Q 001504 14 IEQALIALKKGAQLLKYGRKG------KPKFYPFRLSNDETSLIWISSS---------GERSLKLASVSKIIPGQRTAVF 78 (1065)
Q Consensus 14 ~~~~l~~L~~Gt~l~K~~~~~------kpk~r~f~L~~d~~~l~W~~~~---------~~~~~~l~~I~eI~~G~~t~~f 78 (1065)
|.+||..|+.|++|+||.|++ +||+|+|+|++++.+|.|.+.. +.+.+.|.+|.+|..|..++.|
T Consensus 2 v~~ai~~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~ 81 (123)
T PF12814_consen 2 VIQAITQLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPG 81 (123)
T ss_pred HHHHHHHhhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCcc
Confidence 689999999999999999988 9999999999999999996643 2356899999999999999988
Q ss_pred hhhcCCCCCCceEEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 001504 79 QRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1065)
Q Consensus 79 ~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1065)
. .+++.+|||++....|+|||+|++.+++++|+.||++|+.
T Consensus 82 ~-----~~~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 82 L-----KKPDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred c-----cccccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 7 1223667777777889999999999999999999999984
No 11
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.62 E-value=3.3e-16 Score=129.46 Aligned_cols=34 Identities=74% Similarity=1.151 Sum_probs=32.3
Q ss_pred ccccceEEeeCCeeEEEEEEcCCCccceeEeecC
Q 001504 1032 QVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFR 1065 (1065)
Q Consensus 1032 ~~~~~~~~~~~~gv~~t~~~~~~g~~~~~r~~f~ 1065 (1065)
++++|||||+||||||||++||+|+|+|||||||
T Consensus 1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFS 34 (59)
T PF08381_consen 1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFS 34 (59)
T ss_pred CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEh
Confidence 3579999999999999999999999999999998
No 12
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.37 E-value=5.8e-14 Score=164.32 Aligned_cols=138 Identities=20% Similarity=0.420 Sum_probs=125.1
Q ss_pred CcccccCCCccccHHHHHHHHhcCCeEEEEe-cCCcCeeeeEEEeCCCCEEEEecCC--CCcccccceeeecccccCChh
Q 001504 1 MADLVSYGNADRDIEQALIALKKGAQLLKYG-RKGKPKFYPFRLSNDETSLIWISSS--GERSLKLASVSKIIPGQRTAV 77 (1065)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~L~~Gt~l~K~~-~~~kpk~r~f~L~~d~~~l~W~~~~--~~~~~~l~~I~eI~~G~~t~~ 77 (1065)
|.|.+..+|++.++.+.+++|..|+.|+++. ++.+|.+|++.+..+.+++.|.... -++.++|.+|+|||+|+++..
T Consensus 1 ~~~~n~~aps~~e~~~t~~sle~gtvmt~~~sk~~~peRr~l~~~~Etrq~~ws~~adk~egai~i~eikeirpgk~skd 80 (1267)
T KOG1264|consen 1 STCVNVDAPSEYEKSQTKRSLELGTVMTVFSSKKSTPERRTLQVIMETRQVAWSKTADKIEGAIDIREIKEIRPGKNSKD 80 (1267)
T ss_pred CCcccCCCcchhhHHHHHhhhccceEEEEEecCCCChhhHHHHHHHHHHHHHHHHHHHhhcceeeeeeeeeccCCccchh
Confidence 6788889999999999999999999999994 4568999999999999999996654 488999999999999999999
Q ss_pred HhhhcCC--CCCCceEEEEEcCC--CceEEEEeCCHHHHHHHHHHHHHHHHccCCC--CccccccCC
Q 001504 78 FQRYLRP--EKDYLSFSLIYNNG--KRSLDLICKDKVEAEVWIAGLKALISSGQGG--RSKIDGWND 138 (1065)
Q Consensus 78 f~r~~~~--~~~~~~FSiiy~~~--~rtLDLva~~~~ea~~Wv~GL~~Li~~~~~~--~~~~~~w~~ 138 (1065)
|+||++. .++++||.|.|+.. .++|.|||.+++|++.|+.||++|+.+.+.. +.++++|..
T Consensus 81 fdry~~~fr~k~s~cfvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dtl~a~~p~qI~~wlr 147 (1267)
T KOG1264|consen 81 FDRYKRAFRQKESCCFVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDTLNAPTPLQIERWLR 147 (1267)
T ss_pred HHHHHHHhccccceeEEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhhccCCChHHHHHHHH
Confidence 9999865 67799999999987 7999999999999999999999999888776 678888986
No 13
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.36 E-value=2.4e-13 Score=161.77 Aligned_cols=124 Identities=25% Similarity=0.515 Sum_probs=109.7
Q ss_pred HHHHHHHHhcCCeEEEEecCCcCeeeeEEEeCCCCEEEEecCCC---CcccccceeeecccccCChhHhhhcCCCCCCce
Q 001504 14 IEQALIALKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSG---ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLS 90 (1065)
Q Consensus 14 ~~~~l~~L~~Gt~l~K~~~~~kpk~r~f~L~~d~~~l~W~~~~~---~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~ 90 (1065)
.+++|..|++|+.|.|++..+|.+.|+|.|+.|+.+++|.+..+ +..+.+.+|.+||.|++|+.+++..+...+++|
T Consensus 10 ~~~~~~~~~~gs~~~k~r~~~~~~~r~~~l~~d~~~~r~~~~~~~~~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~~~~ 89 (746)
T KOG0169|consen 10 DDECILSMQKGSDLRKVRSNSRKFNRLFKLDNDGSTVRWSRTNRDPNKAKVSISEIEEVRSGKQTENLRSLARDLPEDRC 89 (746)
T ss_pred cHHHHHHHHhcchhhhhcccchhHHhhhhhhhccceEEeccccCCchhcccchhhhHHHhccccchhhHHHHHhcCccee
Confidence 47899999999999999999999999999999999999965432 233889999999999999999998888999999
Q ss_pred EEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHH--HccCCCCccccccC
Q 001504 91 FSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI--SSGQGGRSKIDGWN 137 (1065)
Q Consensus 91 FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li--~~~~~~~~~~~~w~ 137 (1065)
|+|+|+.+..+|||+|.++++|+.||+||+.|+ ...+.++...+.|=
T Consensus 90 fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~~~~~~~~~~~wi 138 (746)
T KOG0169|consen 90 FSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSKSMRQRSRREHWI 138 (746)
T ss_pred EEEEeccccccccccCCCHHHHHHHhhhHHHHHhccchhhhcchHHHHH
Confidence 999999999999999999999999999999999 44455566666664
No 14
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=99.23 E-value=5e-12 Score=96.39 Aligned_cols=37 Identities=70% Similarity=0.891 Sum_probs=32.3
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 001504 876 AEESSKAKAAKDVIKSLTAQLKDMAERLPPGVYDPENM 913 (1065)
Q Consensus 876 ~~e~~~~k~~~e~ik~l~~qlk~~~~k~~~~~~~~~~~ 913 (1065)
+||++|||+|||+||+||+|||||++||| +.++.+++
T Consensus 1 ~eEaak~kaaKe~IKsLt~QlK~maekl~-~~~~~~k~ 37 (39)
T PF13713_consen 1 AEEAAKCKAAKEVIKSLTAQLKDMAEKLP-GAYRNCKP 37 (39)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhCc-hhhhccCC
Confidence 47999999999999999999999999997 66665443
No 15
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.14 E-value=1.7e-11 Score=107.77 Aligned_cols=67 Identities=42% Similarity=0.964 Sum_probs=47.9
Q ss_pred eccccccccccccccccccccccccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHhh
Q 001504 628 KWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1065)
Q Consensus 628 ~wvs~~d~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~ 694 (1065)
.|+++.+...|..|...|++.++||||+.||.+||..|+..+...+.......+++|||+.||..|+
T Consensus 2 ~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 2 HWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp -SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 6999999999999999999999999999999999999999887555334566799999999999886
No 16
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.09 E-value=7e-11 Score=97.33 Aligned_cols=50 Identities=34% Similarity=0.675 Sum_probs=47.8
Q ss_pred CCeEEEEeCCCCCCCC-CCCCCCCcccEEeccccCccEEEEecCCCccceE
Q 001504 575 RNEVYTWGKGANGRLG-HGDVEDRKTPALVEALKDRHVKYIACGSNYSAAI 624 (1065)
Q Consensus 575 dG~VytWG~n~~GQLG-~G~~~~~~~P~~V~~l~~~~V~~IacG~~hT~al 624 (1065)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888899999999999999999999999999987
No 17
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.4e-09 Score=129.08 Aligned_cols=70 Identities=39% Similarity=0.884 Sum_probs=60.7
Q ss_pred eeeeccccccccccccccccccccccccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHhhhhccc
Q 001504 625 CLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVSEA 699 (1065)
Q Consensus 625 ~~~~wvs~~d~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~~~~~~ 699 (1065)
+...|+. ...|..|...|+++.|+|||++||.+||..|+++-...+.++.. +|+|||+.||..+.+....
T Consensus 158 ~~pdW~D---~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~--~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 158 TAPDWID---SEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIE--KPVRVCDSCYELLTRASVG 227 (634)
T ss_pred CCccccc---ccccceeeeeeeeccccccccccchhhccCccccccCccccccc--ccceehhhhHHHhhhcccc
Confidence 3445654 45699999999999999999999999999999999888888887 9999999999999875543
No 18
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.3e-12 Score=151.06 Aligned_cols=188 Identities=30% Similarity=0.470 Sum_probs=148.7
Q ss_pred ccccccCCCCCEEEEEecCCeEEEEEcCCcEEEEeCCCCCccCCCCCcceeccEEeeccCCCCEEEEEeCCCeEEEEEeC
Q 001504 274 PRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMA 353 (1065)
Q Consensus 274 P~~l~~~~~~~V~~Ia~G~~Hs~~LT~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~d 353 (1065)
|+.+......+|.+|+||.+|+++++..|++|.||.|.+||+|++....-..|..++.+.+....+|++|..|++++..
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~- 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS- 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-
Confidence 3333444456789999999999999999999999999999999985443344999999999999999999999999875
Q ss_pred CcEEEeCCCCCCCCcCCCCCCcceeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCCCccCCCCCCCcccc
Q 001504 354 GELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYP 433 (1065)
Q Consensus 354 G~Vy~WG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P 433 (1065)
|+++++.+|.+|++|....||+|++-......|
T Consensus 84 -----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~ 116 (850)
T KOG0941|consen 84 -----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLP 116 (850)
T ss_pred -----------------------------------------------chhhcchhccccccCCccccccccccccccccc
Confidence 999999999999999999999999777778888
Q ss_pred eeecccccceEEEEecCCceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCCCcccceEe--cc----cCCCCE
Q 001504 434 REVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCV--PA----LIDYNF 507 (1065)
Q Consensus 434 ~~V~~l~~~~I~~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V--~~----l~~~~I 507 (1065)
..+..+-+..+..|+||..|+.+++. .-|++|..|.+..| +.....+..- .. .....+
T Consensus 117 ~~v~e~i~~~~t~ia~~~~ht~a~v~----------~l~qsf~~~~~~sG------k~~i~s~s~~~~l~~~d~~~~~~~ 180 (850)
T KOG0941|consen 117 LLVLELIGSRVTRIACVRGHTLAIVP----------RLGQSFSFGKGASG------KGVIVSLSGEDLLRDHDSEKDHRC 180 (850)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhh----------hhcceeecccCCCC------CceeeccchhhhcccccHHHHHHH
Confidence 88888888899999999999999864 57999999998877 1011111110 00 011234
Q ss_pred EEEEecCCEEEEEecCCc
Q 001504 508 HKVACGHSLTVGLTTSGH 525 (1065)
Q Consensus 508 ~~Ia~G~~htvaLT~dG~ 525 (1065)
..+..|.+.++.|...+.
T Consensus 181 ~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 181 SLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred HHHhcCCCceEEEEeecc
Confidence 557888888888766543
No 19
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.95 E-value=1.1e-09 Score=90.23 Aligned_cols=50 Identities=34% Similarity=0.639 Sum_probs=47.5
Q ss_pred CCcEEEEeCCCCCccC-CCCCcceeccEEeeccCCCCEEEEEeCCCeEEEE
Q 001504 301 QGEVFTWGEESGGRLG-HGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAV 350 (1065)
Q Consensus 301 dG~Vy~WG~N~~GqLG-~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aL 350 (1065)
||+||+||.|.+|||| .+.......|++|..+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888899999999999999999999999999997
No 20
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=98.86 E-value=4.6e-10 Score=123.76 Aligned_cols=68 Identities=37% Similarity=0.855 Sum_probs=61.9
Q ss_pred eeeeccccccccccccccc-cccccccccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHhhh
Q 001504 625 CLHKWVSSAEQLQCSACRQ-AFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNK 695 (1065)
Q Consensus 625 ~~~~wvs~~d~s~C~~C~~-~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~~ 695 (1065)
..+.|++|.+...|+.|+. .|++..|||||++||.+||..|+.++ +.+.....+|.|||+.||..|.+
T Consensus 158 ~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~---~~l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 158 SAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNR---FLLPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred cCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCc---ccccccCCCCceecHHHHHHHhc
Confidence 3468999999999999999 99999999999999999999999887 45667778999999999999986
No 22
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.8e-10 Score=138.21 Aligned_cols=182 Identities=25% Similarity=0.371 Sum_probs=139.9
Q ss_pred CCcEEEEEecCCeEEEEecCCcEEEEeCCCCCccCCCCCCCcccceeecccccceEEEEecCCceEEEEEEeeeeccccc
Q 001504 389 GLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSAS 468 (1065)
Q Consensus 389 ~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~ht~aL~ev~~~~s~~~ 468 (1065)
-.+|.+++||.+|+++++..|.+|.||.|.+||+|++.......|..++.+.+.+..+|++|..|++++.- .+...
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~----~~~~l 88 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS----HTVLL 88 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh----chhhc
Confidence 34789999999999999999999999999999999995444444999999999999999999999999832 23456
Q ss_pred cCCCeEEEecCCCCCCCCCCCCCCcccceEecccCCCCEEEEEecCCEEEEEec-CCcEEEEeCCCCC--CCCCCCCCCC
Q 001504 469 VSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTT-SGHVFTMGSTVYG--QLGNPNADGK 545 (1065)
Q Consensus 469 t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~-dG~Vy~wGsN~~G--QLG~~~~~~~ 545 (1065)
+.+|.+|++|....||+|+........|..+..+.+..+.+|+||..|+++.-. -|++|.+|.+..| ++-.....
T Consensus 89 t~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s~~-- 166 (850)
T KOG0941|consen 89 TDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLSGE-- 166 (850)
T ss_pred chhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccchh--
Confidence 779999999999999999987888888998888888999999999999987654 5999999988877 11100000
Q ss_pred cceeeecccCCCCeeEEEEcCCcceeeecCC
Q 001504 546 LPCLVEDKLAGESVEEIACGAYHVAVLTSRN 576 (1065)
Q Consensus 546 ~P~~v~~~l~~~~V~~Ia~G~~Hs~aLT~dG 576 (1065)
.--.-.+......+..+..|.+.+..|...+
T Consensus 167 ~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 167 DLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred hhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 0000000011223555778888877776554
No 23
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=98.75 E-value=3.4e-09 Score=124.30 Aligned_cols=72 Identities=28% Similarity=0.658 Sum_probs=54.1
Q ss_pred eeeecccccc-cccccccccccccc-----ccccccccCCceeecCCCcccccccc--c-CC---CCCCceEeccchHhH
Q 001504 625 CLHKWVSSAE-QLQCSACRQAFGFT-----RKRHNCYNCGLVHCHSCSSRKALRAA--L-AP---NPGKPYRVCDCCFAK 692 (1065)
Q Consensus 625 ~~~~wvs~~d-~s~C~~C~~~F~f~-----rkrh~C~~CG~v~C~~CS~~k~~~~~--l-~p---~~~kp~RVC~~C~~~ 692 (1065)
....|+++.+ ...|+.|++.|.+. .|+||||+||.+||..||+++...+. + .| ....|+|||+.||.+
T Consensus 449 hAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq 528 (1374)
T PTZ00303 449 HNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKE 528 (1374)
T ss_pred cCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHH
Confidence 4568999987 47899999999753 58999999999999999998764211 1 11 122366999999976
Q ss_pred hhhh
Q 001504 693 LNKV 696 (1065)
Q Consensus 693 l~~~ 696 (1065)
+...
T Consensus 529 ~EnL 532 (1374)
T PTZ00303 529 YETV 532 (1374)
T ss_pred HHhH
Confidence 6543
No 24
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.66 E-value=3.1e-08 Score=72.55 Aligned_cols=30 Identities=37% Similarity=0.933 Sum_probs=26.1
Q ss_pred EEEEEecCCeEEEEecCCcEEEEeCCCCCc
Q 001504 392 VASVTCGPWHTALITSTGQLFTFGDGTFGV 421 (1065)
Q Consensus 392 Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQ 421 (1065)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 25
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.65 E-value=3.7e-08 Score=72.13 Aligned_cols=30 Identities=43% Similarity=0.894 Sum_probs=26.0
Q ss_pred EEEEEecCCeEEEEEcCCcEEEEeCCCCCc
Q 001504 285 VHHIACGVRHAALVTRQGEVFTWGEESGGR 314 (1065)
Q Consensus 285 V~~Ia~G~~Hs~~LT~dG~Vy~WG~N~~Gq 314 (1065)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999987
No 26
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.61 E-value=1e-08 Score=115.43 Aligned_cols=70 Identities=34% Similarity=0.733 Sum_probs=58.7
Q ss_pred cceEeeeeccccccccccccccccccccccccccccCCceeecCCCcccccccccCCCCCCceEecc-----chHhH
Q 001504 621 SAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCD-----CCFAK 692 (1065)
Q Consensus 621 T~al~~~~wvs~~d~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~-----~C~~~ 692 (1065)
++.|.-..|+++.+...|+.|..+|.+.|+||||++||.+||+.||...+..+ .....|..|||. .||..
T Consensus 887 satlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip--~~gl~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 887 SATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIP--EHGLDKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred ccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCc--ccccccCceecCCcccccceee
Confidence 44455678999999999999999999999999999999999999997665443 444559999999 77753
No 27
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=98.59 E-value=7.5e-09 Score=119.03 Aligned_cols=115 Identities=27% Similarity=0.416 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCeEEEE-ecCCcCeeeeEEEeCCCCEEEEecCCC-----------CcccccceeeecccccCChhHhhhc
Q 001504 15 EQALIALKKGAQLLKY-GRKGKPKFYPFRLSNDETSLIWISSSG-----------ERSLKLASVSKIIPGQRTAVFQRYL 82 (1065)
Q Consensus 15 ~~~l~~L~~Gt~l~K~-~~~~kpk~r~f~L~~d~~~l~W~~~~~-----------~~~~~l~~I~eI~~G~~t~~f~r~~ 82 (1065)
.|.|..|+.||.|.|. +|+.+.||++.+|+++++.|++..... .+.+++.||+.|..|++++..+...
T Consensus 534 qqrLnrL~eGt~FRKl~~rrrqdkFWycrLspnhKvLhygd~de~p~~e~~~esl~~klpvaDIkav~tgkdcphmkek~ 613 (713)
T KOG2999|consen 534 QQRLNRLVEGTVFRKLSKRRRQDKFWYCRLSPNHKVLHYGDCDEEPQGEVTQESLQEKLPVADIKAVVTGKDCPHMKEKS 613 (713)
T ss_pred HHHHHHHHhhhHHHHhhhhhhhhhheeeeecCCcceeeecCccCCCCCCCchhhhhhhcCHHHHHHHhcCCCCcchhhcc
Confidence 4799999999999999 456778999999999999999955432 3568999999999999999887652
Q ss_pred C----CCCCCceEEEEEcCC-CceEEEEeCCHHHHHHHHHHHHHHHHccCCC
Q 001504 83 R----PEKDYLSFSLIYNNG-KRSLDLICKDKVEAEVWIAGLKALISSGQGG 129 (1065)
Q Consensus 83 ~----~~~~~~~FSiiy~~~-~rtLDLva~~~~ea~~Wv~GL~~Li~~~~~~ 129 (1065)
. .+.-+..|||.|... ..+|++||+|+.|+..|+.||.+|+...|-+
T Consensus 614 a~kQnk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~~m~s 665 (713)
T KOG2999|consen 614 ALKQNKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGSDMVS 665 (713)
T ss_pred hhhhhHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCChhhh
Confidence 2 234479999999743 6899999999999999999999999776644
No 28
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.45 E-value=7.3e-08 Score=81.43 Aligned_cols=55 Identities=42% Similarity=1.018 Sum_probs=47.2
Q ss_pred ccccccccccccccccccccccCCceeecCCCcccccccccCCCCCCceEeccchHh
Q 001504 635 QLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFA 691 (1065)
Q Consensus 635 ~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~ 691 (1065)
...|..|...|++..++|||+.||.++|..|+..+...+.+ ...+|+|||+.||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence 35799999999999999999999999999999987644322 46799999999996
No 29
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=97.82 E-value=1.8e-06 Score=97.60 Aligned_cols=69 Identities=33% Similarity=0.784 Sum_probs=54.6
Q ss_pred eeccccccccccccccccccccccccccccCCceeecCCCcccccccc------------c--------CCCCCCceEec
Q 001504 627 HKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAA------------L--------APNPGKPYRVC 686 (1065)
Q Consensus 627 ~~wvs~~d~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~------------l--------~p~~~kp~RVC 686 (1065)
-.|+.|.++..|..|...|++++|||||+-||.+.|+.|+..-.+..+ . .+....+.|+|
T Consensus 172 VpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC 251 (505)
T KOG1842|consen 172 VPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLC 251 (505)
T ss_pred ccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHH
Confidence 369999999999999999999999999999999999999632221000 0 12344678999
Q ss_pred cchHhHhhh
Q 001504 687 DCCFAKLNK 695 (1065)
Q Consensus 687 ~~C~~~l~~ 695 (1065)
..|-..|-.
T Consensus 252 ~hCl~~L~~ 260 (505)
T KOG1842|consen 252 MHCLDNLFR 260 (505)
T ss_pred HHHHHHHHH
Confidence 999998875
No 30
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=97.61 E-value=1.5e-05 Score=98.55 Aligned_cols=61 Identities=30% Similarity=0.575 Sum_probs=50.8
Q ss_pred eeeccccccccccccccccccccccccccccCCceeecCCCcccccccccCCCCCCceEeccch
Q 001504 626 LHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCC 689 (1065)
Q Consensus 626 ~~~wvs~~d~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C 689 (1065)
-..||++...--|+.|.+.|.+.+|||||++||.++|..|++.|... -+..++.-|||.-|
T Consensus 548 qP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~l---eyl~e~~~rv~nV~ 608 (1287)
T KOG1841|consen 548 QPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSAL---EYLSESEGRVSNVD 608 (1287)
T ss_pred CCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhh---hhcCcccccccccc
Confidence 46899999999999999999999999999999999999999988744 34434555566655
No 31
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.60 E-value=0.00046 Score=65.14 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=60.5
Q ss_pred CCeEEEEecCCc-----CeeeeEEEeCCCCEEEEecCC---CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEE
Q 001504 24 GAQLLKYGRKGK-----PKFYPFRLSNDETSLIWISSS---GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1065)
Q Consensus 24 Gt~l~K~~~~~k-----pk~r~f~L~~d~~~l~W~~~~---~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy 95 (1065)
|..|+|-.+.|+ -|.|+|.|+ ...|.|++.. +...|+|..|+-|..-.+. ......+|.|++
T Consensus 4 ~~~~~kr~~~~~~~~~n~KkRwF~Lt--~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~--------~~~~~~~fqivt 73 (98)
T cd01244 4 NLQQVDRSRLAWKKVLHFKKRYFQLT--TTHLSWAKDVQCKKSALIKLAAIKGTEPLSDK--------SFVNVDIITIVC 73 (98)
T ss_pred ccEEEEcccCCCccCcCCceeEEEEC--CCEEEEECCCCCceeeeEEccceEEEEEcCCc--------ccCCCceEEEEe
Confidence 445555533332 277899998 5667775443 3567899988887653221 112246999999
Q ss_pred cCCCceEEEEeCCHHHHHHHHHHHHH
Q 001504 96 NNGKRSLDLICKDKVEAEVWIAGLKA 121 (1065)
Q Consensus 96 ~~~~rtLDLva~~~~ea~~Wv~GL~~ 121 (1065)
.+ ++|-|.|++++|++.|+..|+.
T Consensus 74 ~~--r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 74 ED--DTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred CC--CeEEEECCCHHHHHHHHHHHhc
Confidence 65 8999999999999999999874
No 32
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.42 E-value=0.001 Score=62.60 Aligned_cols=93 Identities=22% Similarity=0.202 Sum_probs=62.2
Q ss_pred eEEEEecC-CcCeeeeEEEeCCCCEEEEecCC----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCc
Q 001504 26 QLLKYGRK-GKPKFYPFRLSNDETSLIWISSS----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKR 100 (1065)
Q Consensus 26 ~l~K~~~~-~kpk~r~f~L~~d~~~l~W~~~~----~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~r 100 (1065)
+|.|-+.. +.=+.|+|.|.++...|.+++.. ....|+|.++..|...+... ..+.......+|.|.. ..|
T Consensus 4 ~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~---~~~~~~~~~~~f~i~t--~~r 78 (101)
T cd01235 4 YLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGM---GAPKHTSRKGFFDLKT--SKR 78 (101)
T ss_pred EEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCC---CCCCCCCCceEEEEEe--CCc
Confidence 45565442 23377899999988889886643 24568888777776533221 0011122345666655 459
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHH
Q 001504 101 SLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 101 tLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
++-|.|++.+|++.||..|+.+|
T Consensus 79 ~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 79 TYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred eEEEECCCHHHHHHHHHHHHhhC
Confidence 99999999999999999998764
No 33
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.34 E-value=0.00042 Score=66.40 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=54.4
Q ss_pred eeeeEEEeCCCCEEEEecCCC------CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCCHH
Q 001504 37 KFYPFRLSNDETSLIWISSSG------ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKV 110 (1065)
Q Consensus 37 k~r~f~L~~d~~~l~W~~~~~------~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~ 110 (1065)
|.|+|.|. ..+|.|++... ...|+|..+..|..-..... .........||.|+..+ +++-|.|+|++
T Consensus 22 KkRwFvL~--~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~---~~~~~~~~~~F~i~t~~--r~~yl~A~s~~ 94 (106)
T cd01238 22 KERLFVLT--KSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKN---PPIPERFKYPFQVVHDE--GTLYVFAPTEE 94 (106)
T ss_pred eeEEEEEc--CCEEEEECCCcccccCcceeEECCcceEEEEecCCcC---cccccccCccEEEEeCC--CeEEEEcCCHH
Confidence 67899995 55788866543 35688888766654222110 00112235799999965 89999999999
Q ss_pred HHHHHHHHHHH
Q 001504 111 EAEVWIAGLKA 121 (1065)
Q Consensus 111 ea~~Wv~GL~~ 121 (1065)
|++.||..|+.
T Consensus 95 er~~WI~ai~~ 105 (106)
T cd01238 95 LRKRWIKALKQ 105 (106)
T ss_pred HHHHHHHHHHh
Confidence 99999999975
No 34
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.27 E-value=0.00011 Score=81.31 Aligned_cols=80 Identities=28% Similarity=0.702 Sum_probs=62.4
Q ss_pred EEEecCCCccceEe--------eeecccccccccccccccccc-----------ccccccccccCCceeecCCCcccccc
Q 001504 612 KYIACGSNYSAAIC--------LHKWVSSAEQLQCSACRQAFG-----------FTRKRHNCYNCGLVHCHSCSSRKALR 672 (1065)
Q Consensus 612 ~~IacG~~hT~al~--------~~~wvs~~d~s~C~~C~~~F~-----------f~rkrh~C~~CG~v~C~~CS~~k~~~ 672 (1065)
.-++||.+--+++- ...|+.+ ..|..|.++|- ++-|-|||+.||..+|..|+++....
T Consensus 254 ~l~S~~edg~i~~w~mn~~r~etpewl~s---~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~ 330 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNVKRVETPEWLDS---DSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSY 330 (404)
T ss_pred eeeeccCCCeEEEEeccceeecCcccccc---chhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccc
Confidence 34677777666652 2456554 45778888774 34568999999999999999999988
Q ss_pred cccCCCCCCceEeccchHhHhhhh
Q 001504 673 AALAPNPGKPYRVCDCCFAKLNKV 696 (1065)
Q Consensus 673 ~~l~p~~~kp~RVC~~C~~~l~~~ 696 (1065)
+.+.+. ..+|+|+.||..++-.
T Consensus 331 p~mg~e--~~vR~~~~c~~~i~~~ 352 (404)
T KOG1409|consen 331 PTMGFE--FSVRVCDSCYPTIKDE 352 (404)
T ss_pred ccccce--eEEEEecccchhhhcC
Confidence 888877 8899999999999854
No 35
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.01 E-value=0.0036 Score=60.07 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=54.4
Q ss_pred eeeeEEEeCCCC-----EEEEecCC----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeC
Q 001504 37 KFYPFRLSNDET-----SLIWISSS----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICK 107 (1065)
Q Consensus 37 k~r~f~L~~d~~-----~l~W~~~~----~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~ 107 (1065)
+.|+|.|..+.. .|.+++.. ..+.|+|..+..|..+.... .....-...|.|.. ..|++-|+|+
T Consensus 20 krRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~-----~~~~~~~~~f~i~t--~~r~y~l~A~ 92 (108)
T cd01266 20 VRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCT-----AGNCIFGYGFDIET--IVRDLYLVAK 92 (108)
T ss_pred EEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEccccccc-----ccCcccceEEEEEe--CCccEEEEEC
Confidence 888999987653 56775543 35678888877765543221 00112235677776 4599999999
Q ss_pred CHHHHHHHHHHHHHH
Q 001504 108 DKVEAEVWIAGLKAL 122 (1065)
Q Consensus 108 ~~~ea~~Wv~GL~~L 122 (1065)
+++|++.||..|+-|
T Consensus 93 s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 93 NEEEMTLWVNCICKL 107 (108)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998754
No 36
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.98 E-value=0.0059 Score=57.27 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=58.7
Q ss_pred CeEEEEec----CCcCeeeeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001504 25 AQLLKYGR----KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1065)
Q Consensus 25 t~l~K~~~----~~kpk~r~f~L~~d~~~l~W~~~~~----~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~ 96 (1065)
.+|.|.+. ++| +.|.|.|..+...|.+++... ...|+|..+..+.. +.....+|.|+..
T Consensus 3 GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~------------~~~~~~~F~i~t~ 69 (95)
T cd01265 3 GYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYD------------PREEKGRFEIHSN 69 (95)
T ss_pred ccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcC------------CCCCCCEEEEEcC
Confidence 46788754 345 778899988888898976643 24455555432211 1112468999885
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHH
Q 001504 97 NGKRSLDLICKDKVEAEVWIAGLKAL 122 (1065)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~L 122 (1065)
+ |+..|.|+|++|++.||..|+..
T Consensus 70 ~--r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 N--EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred C--cEEEEECCCHHHHHHHHHHHHhh
Confidence 4 89999999999999999998754
No 37
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.89 E-value=0.0048 Score=58.90 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=59.1
Q ss_pred EEecCCcCeeeeEEEeCCCCEEEEecC-----CCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEE
Q 001504 29 KYGRKGKPKFYPFRLSNDETSLIWISS-----SGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLD 103 (1065)
Q Consensus 29 K~~~~~kpk~r~f~L~~d~~~l~W~~~-----~~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLD 103 (1065)
.+++++| ++|.|.|..+ ..|.|+.. .+.+.|+|....+|..|.... ....||.|+..+ |+.-
T Consensus 18 ~~~~K~W-krRWFvL~~~-~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~---------~~~~~f~I~tp~--R~f~ 84 (104)
T cd01236 18 VHRSKRW-QRRWFILYDH-GLLTYALDEMPTTLPQGTIDMNQCTDVVDAEART---------GQKFSICILTPD--KEHF 84 (104)
T ss_pred ceeeccc-cceEEEEeCC-CEEEEeeCCCCCcccceEEEccceEEEeeccccc---------CCccEEEEECCC--ceEE
Confidence 3456666 6778999744 45667322 235678999998888876431 125799998865 9999
Q ss_pred EEeCCHHHHHHHHHHHHH
Q 001504 104 LICKDKVEAEVWIAGLKA 121 (1065)
Q Consensus 104 Lva~~~~ea~~Wv~GL~~ 121 (1065)
|+|++++|++.|+..|..
T Consensus 85 l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 85 IKAETKEEISWWLNMLMV 102 (104)
T ss_pred EEeCCHHHHHHHHHHHHh
Confidence 999999999999998864
No 38
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00024 Score=80.07 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=57.1
Q ss_pred eecccccccccccccccccc-ccccccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHhh
Q 001504 627 HKWVSSAEQLQCSACRQAFG-FTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1065)
Q Consensus 627 ~~wvs~~d~s~C~~C~~~F~-f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~ 694 (1065)
..|..+.....|++|-..|+ +..+||||+.|+..+|.+|+--+.+.+ ..|-...++|||+.|+..|.
T Consensus 152 p~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp-~p~a~d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 152 PVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVP-VPFAADPLQRVLDSCAFNLE 219 (473)
T ss_pred ccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCC-CCcccCCHHHHHhhHhhccC
Confidence 57888999999999999998 778999999999999999987666443 34455689999999999994
No 39
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=96.85 E-value=0.014 Score=53.82 Aligned_cols=90 Identities=24% Similarity=0.332 Sum_probs=64.0
Q ss_pred eEEEEe-cCCcCeeeeEEEeCCCCEEEEec-CC------CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC
Q 001504 26 QLLKYG-RKGKPKFYPFRLSNDETSLIWIS-SS------GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN 97 (1065)
Q Consensus 26 ~l~K~~-~~~kpk~r~f~L~~d~~~l~W~~-~~------~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~ 97 (1065)
+|.|.+ ..++.+.|+|.|..+ .|.++. .. ....+.|.++ +|+.....+. ........||.|.+.+
T Consensus 6 ~L~~~~~~~~~wk~r~~vL~~~--~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~----~~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 6 WLLKKSSSRKKWKKRYFVLRDS--YLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDF----LSNKKRKNCFEITTPN 78 (104)
T ss_dssp EEEEEESSSSSEEEEEEEEETT--EEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTS----TSTSSSSSEEEEEETT
T ss_pred EEEEECCCCCCeEEEEEEEECC--EEEEEecCccccceeeeEEEEecCc-eEEEcCcccc----ccccCCCcEEEEEeCC
Confidence 455665 456668899999774 344433 32 2345777777 6766555532 1334568999999977
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 98 GKRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
+ +++-|.|+++++++.|+..|+..+
T Consensus 79 ~-~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 79 G-KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp S-EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred C-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 4 799999999999999999998765
No 40
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.85 E-value=0.0056 Score=58.02 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=55.7
Q ss_pred eeeeEEEeCCCCEEEEecCC----CC-cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCCHHH
Q 001504 37 KFYPFRLSNDETSLIWISSS----GE-RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVE 111 (1065)
Q Consensus 37 k~r~f~L~~d~~~l~W~~~~----~~-~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~e 111 (1065)
+.|+|.|. ...|.|++.. +. ..|+|.++..|+...+.. .......||.|++.+ ||.-|+|+|++|
T Consensus 20 krRwF~L~--~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~------~~~~~~~~Fei~tp~--rt~~l~A~se~e 89 (101)
T cd01264 20 KTRYFTLS--GAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKR------RDRSLPKAFEIFTAD--KTYILKAKDEKN 89 (101)
T ss_pred eeEEEEEe--CCEEEEEeccCccCCCCceEEcccceEEeeccccc------cccccCcEEEEEcCC--ceEEEEeCCHHH
Confidence 67899998 4457775543 23 678999998888765431 111125699999966 999999999999
Q ss_pred HHHHHHHHHH
Q 001504 112 AEVWIAGLKA 121 (1065)
Q Consensus 112 a~~Wv~GL~~ 121 (1065)
++.||..|+.
T Consensus 90 ~e~WI~~i~~ 99 (101)
T cd01264 90 AEEWLQCLNI 99 (101)
T ss_pred HHHHHHHHHh
Confidence 9999998863
No 41
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=96.76 E-value=0.0078 Score=54.55 Aligned_cols=91 Identities=25% Similarity=0.318 Sum_probs=61.0
Q ss_pred hcCCeEEEEe-cCCcCeeeeEEEeCCCCEEEEecCC-------CCcccccceeeecccccCChhHhhhcCCCCCCceEEE
Q 001504 22 KKGAQLLKYG-RKGKPKFYPFRLSNDETSLIWISSS-------GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSL 93 (1065)
Q Consensus 22 ~~Gt~l~K~~-~~~kpk~r~f~L~~d~~~l~W~~~~-------~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSi 93 (1065)
+.|..+.+.. ..++.+.|++.|..+ .|.+++.. ....+.|.++ .|..+.+... .....+|.|
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-------~~~~~~f~l 72 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFNS--TLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-------AKKPHCFEI 72 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEECC--EEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-------CCCceEEEE
Confidence 3444444443 356778888988874 44453332 2344566666 5555544432 334689999
Q ss_pred EEcCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 94 IYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 94 iy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
.+.++ ++|-|.|++.+|++.|+..|+.++
T Consensus 73 ~~~~~-~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 73 KTADR-RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EecCC-ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 99764 699999999999999999998764
No 42
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=96.72 E-value=0.011 Score=55.07 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=52.5
Q ss_pred eEEEEec--CCcCeeeeEEEeCCCCEEEEecCCCC------cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC
Q 001504 26 QLLKYGR--KGKPKFYPFRLSNDETSLIWISSSGE------RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN 97 (1065)
Q Consensus 26 ~l~K~~~--~~kpk~r~f~L~~d~~~l~W~~~~~~------~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~ 97 (1065)
.|.|.+. ++| +.|+|.|. ...|.++..+.+ ..|+|....-+ ....+..+|.|+...
T Consensus 4 ~L~K~~~~~k~W-k~RwFvL~--~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~-------------~~~~~~~~F~i~~~~ 67 (91)
T cd01247 4 VLSKWTNYINGW-QDRYFVLK--EGNLSYYKSEAEKSHGCRGSIFLKKAIIA-------------AHEFDENRFDISVNE 67 (91)
T ss_pred EEEEeccccCCC-ceEEEEEE--CCEEEEEecCccCcCCCcEEEECcccEEE-------------cCCCCCCEEEEEeCC
Confidence 5777755 455 77889994 467878665433 33444432111 112235789987654
Q ss_pred CCceEEEEeCCHHHHHHHHHHHH
Q 001504 98 GKRSLDLICKDKVEAEVWIAGLK 120 (1065)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~ 120 (1065)
.+++.|.|.+++|++.||..|+
T Consensus 68 -~r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 68 -NVVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred -CeEEEEEeCCHHHHHHHHHHHh
Confidence 4999999999999999999986
No 43
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=96.70 E-value=0.0087 Score=56.66 Aligned_cols=93 Identities=15% Similarity=0.077 Sum_probs=57.0
Q ss_pred HhcCCeEEEEecCCcCeeeeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001504 21 LKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1065)
Q Consensus 21 L~~Gt~l~K~~~~~kpk~r~f~L~~d~~~l~W~~~~~----~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~ 96 (1065)
|+.|-...|-+..+.=+.|+|.|... .|.+++..+ ...|+|.++.-...-...+. .....||.|+..
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~~--~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~-------~~~~~~F~I~t~ 73 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRRP--YLHIYRSDKDPVERGVINLSTARVEHSEDQAAM-------VKGPNTFAVCTK 73 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEECC--EEEEEccCCCccEeeEEEecccEEEEccchhhh-------cCCCcEEEEECC
Confidence 45554444433333348889999864 677765543 33445544321111000000 112469999775
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 001504 97 NGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1065)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1065)
.|++-|.|++++|++.|+..|+.++.
T Consensus 74 --~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 74 --HRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred --CCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 59999999999999999999998763
No 44
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.28 E-value=0.015 Score=52.15 Aligned_cols=77 Identities=25% Similarity=0.210 Sum_probs=51.6
Q ss_pred CcCeeeeEEEeCCCCEEEEecCC-----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCC
Q 001504 34 GKPKFYPFRLSNDETSLIWISSS-----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKD 108 (1065)
Q Consensus 34 ~kpk~r~f~L~~d~~~l~W~~~~-----~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~ 108 (1065)
+..+.|++.|..+...+.-.... ....+.|.+ ..|....... ....+|.|++.++ +.+.|.|++
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~---------~~~~~f~i~~~~~-~~~~~~~~s 82 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS---------GRKNCFEIRTPDG-RSYLLQAES 82 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC---------CCCcEEEEecCCC-cEEEEEeCC
Confidence 44577888888665555332222 233445554 3444333332 4578999998765 899999999
Q ss_pred HHHHHHHHHHHHH
Q 001504 109 KVEAEVWIAGLKA 121 (1065)
Q Consensus 109 ~~ea~~Wv~GL~~ 121 (1065)
.+|++.|+..|+.
T Consensus 83 ~~~~~~W~~~l~~ 95 (96)
T cd00821 83 EEEREEWIEALQS 95 (96)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999874
No 45
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=96.21 E-value=0.041 Score=52.42 Aligned_cols=88 Identities=19% Similarity=0.358 Sum_probs=57.1
Q ss_pred eEEEEec---CCcCeeeeEEEeCCCCEEEEecCCC----Ccccccceee---ecccccCChhHhhhcCCCCCCceEEEEE
Q 001504 26 QLLKYGR---KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVS---KIIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1065)
Q Consensus 26 ~l~K~~~---~~kpk~r~f~L~~d~~~l~W~~~~~----~~~~~l~~I~---eI~~G~~t~~f~r~~~~~~~~~~FSiiy 95 (1065)
.|.|-+. ++| +.|+|.|. ...|.++.... ...|+|.++. +|..+..... ......||.|+.
T Consensus 4 ~L~K~g~~~~k~w-kkRwFvL~--~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~------~~~~~~~F~i~t 74 (103)
T cd01251 4 FMEKTGPKHTEGF-KKRWFTLD--DRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT------QGNHWYGVTLVT 74 (103)
T ss_pred eEEecCCCCCCCc-eeEEEEEe--CCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc------cccccceEEEEe
Confidence 4667653 334 88899997 45788866542 3446665443 2332211100 011123999888
Q ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 001504 96 NNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1065)
Q Consensus 96 ~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1065)
. .|+.-|.|++++|++.||..|+..|.
T Consensus 75 ~--~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 75 P--ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred C--CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 5 59999999999999999999998874
No 46
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.07 E-value=0.039 Score=52.40 Aligned_cols=92 Identities=22% Similarity=0.245 Sum_probs=56.0
Q ss_pred HhcCCeEEEEecC-CcCeeeeEEEeCCCCEEEEecCCC--Cccc---ccceeeecccccCChhHhhhcCCCCCCceEEEE
Q 001504 21 LKKGAQLLKYGRK-GKPKFYPFRLSNDETSLIWISSSG--ERSL---KLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLI 94 (1065)
Q Consensus 21 L~~Gt~l~K~~~~-~kpk~r~f~L~~d~~~l~W~~~~~--~~~~---~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSii 94 (1065)
++.|. |+|.+++ .+++.|+|.|-.| ..|.+..... .... ...+|..+..-... ......+|.|.
T Consensus 3 ikeG~-L~K~~~~~~~~k~RyffLFnd-~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~--------~~~~~~~F~I~ 72 (101)
T cd01219 3 LKEGS-VLKISSTTEKTEERYLFLFND-LLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD--------NLERPHSFLVS 72 (101)
T ss_pred ccceE-EEEEecCCCCceeEEEEEeCC-EEEEEEcccccCCCcEEEEEEEecccEEEEeCC--------CCCcCceEEEe
Confidence 45554 5677664 5788999999988 4444442110 1111 11222222221100 11225789986
Q ss_pred EcCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 001504 95 YNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1065)
Q Consensus 95 y~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1065)
... |++.|.|++++|.+.|+..|+..+.
T Consensus 73 ~~~--rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 73 GKQ--RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred cCC--cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 654 9999999999999999999987763
No 47
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.77 E-value=0.061 Score=50.98 Aligned_cols=87 Identities=25% Similarity=0.359 Sum_probs=55.5
Q ss_pred HhcCCeEEEEecCCcCeeeeEEEeCCCCEEEEecCC---C-----CcccccceeeecccccCChhHhhhcCCCCCCceEE
Q 001504 21 LKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSS---G-----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFS 92 (1065)
Q Consensus 21 L~~Gt~l~K~~~~~kpk~r~f~L~~d~~~l~W~~~~---~-----~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FS 92 (1065)
+++|. |+|+++++ ++.|+|.|=.|. |.+.... + ...++|.++. |+...+. + ....||.
T Consensus 3 ikEG~-L~K~~~k~-~~~R~~FLFnD~--LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~--------~-~~~~~F~ 68 (99)
T cd01220 3 IRQGC-LLKLSKKG-LQQRMFFLFSDL--LLYTSKSPTDQNSFRILGHLPLRGML-TEESEHE--------W-GVPHCFT 68 (99)
T ss_pred eeEEE-EEEEeCCC-CceEEEEEccce--EEEEEeecCCCceEEEEEEEEcCceE-EeeccCC--------c-CCceeEE
Confidence 34554 57777765 777888898883 3342211 1 1234555442 3322221 1 1135999
Q ss_pred EEEcCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 93 LIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 93 iiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
|.- ..+++-|.|++++|.+.|+..|+.-|
T Consensus 69 I~~--~~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 69 IFG--GQCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred EEc--CCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 984 46999999999999999999998765
No 48
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=95.66 E-value=0.0026 Score=75.02 Aligned_cols=65 Identities=26% Similarity=0.527 Sum_probs=57.0
Q ss_pred ccccccccccccccc-ccccccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHhhhhccc
Q 001504 632 SAEQLQCSACRQAFG-FTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVSEA 699 (1065)
Q Consensus 632 ~~d~s~C~~C~~~F~-f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~~~~~~ 699 (1065)
......|+.|...|+ .+.+||||..||.+.|..|+..+. .+..+..+..|||..||...+.+..+
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~---~l~~~~s~ssrv~~~~~~~~~~a~~s 477 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMA---KLSYDNSRSSRVCMDRYLTPSGAPGS 477 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhh---hhcccccchhhhhhhhccCCCCCCCC
Confidence 566789999999997 778899999999999999998775 56667889999999999999887665
No 49
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.36 E-value=0.12 Score=47.36 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCceEEEEeCCHHHHHHHHHHHH
Q 001504 88 YLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLK 120 (1065)
Q Consensus 88 ~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~ 120 (1065)
..||.|+..+ +++-|.|++.+|++.|+..|+
T Consensus 62 ~~~f~i~~~~--~~~~f~a~s~~~~~~Wi~al~ 92 (94)
T cd01250 62 RFCFEVISPT--KTWHFQADSEEERDDWISAIQ 92 (94)
T ss_pred ceEEEEEcCC--cEEEEECCCHHHHHHHHHHHh
Confidence 5799999866 999999999999999999986
No 50
>PF15409 PH_8: Pleckstrin homology domain
Probab=95.06 E-value=0.18 Score=46.68 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=53.4
Q ss_pred eEEEEecC---CcCeeeeEEEeCCCCEEEEecCCCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceE
Q 001504 26 QLLKYGRK---GKPKFYPFRLSNDETSLIWISSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSL 102 (1065)
Q Consensus 26 ~l~K~~~~---~kpk~r~f~L~~d~~~l~W~~~~~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtL 102 (1065)
+|+|=+++ |+ +.|+|.|+.+...|.++....+.. +..--.|... . -...+..++|.|-- +....
T Consensus 2 ~llKkrr~~lqG~-~kRyFvL~~~~G~LsYy~~~~~~~--~rGsi~v~~a--~------is~~~~~~~I~ids--g~~i~ 68 (89)
T PF15409_consen 2 WLLKKRRKPLQGW-HKRYFVLDFEKGTLSYYRNQNSGK--LRGSIDVSLA--V------ISANKKSRRIDIDS--GDEIW 68 (89)
T ss_pred cceeeccccCCCc-eeEEEEEEcCCcEEEEEecCCCCe--eEeEEEccce--E------EEecCCCCEEEEEc--CCeEE
Confidence 45665442 43 889999999999999977554321 1110011111 0 01123457777765 45789
Q ss_pred EEEeCCHHHHHHHHHHHHH
Q 001504 103 DLICKDKVEAEVWIAGLKA 121 (1065)
Q Consensus 103 DLva~~~~ea~~Wv~GL~~ 121 (1065)
+|-|.++++++.||..|+.
T Consensus 69 hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 69 HLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred EEEcCCHHHHHHHHHHHHh
Confidence 9999999999999999975
No 51
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.87 E-value=0.16 Score=46.32 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=50.5
Q ss_pred eEEEEe-cCCcCeeeeEEEeCCCCEEEEecCCCC------cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001504 26 QLLKYG-RKGKPKFYPFRLSNDETSLIWISSSGE------RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1065)
Q Consensus 26 ~l~K~~-~~~kpk~r~f~L~~d~~~l~W~~~~~~------~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~ 98 (1065)
.|.|.+ ..+.-+.|+|.|. ...|.++..... ..+.|.... |.. ......+|.|...+
T Consensus 4 ~L~k~~~~~~~W~~r~~vl~--~~~L~~~~~~~~~~~~~~~~i~l~~~~-~~~------------~~~~~~~F~i~~~~- 67 (91)
T cd01246 4 WLLKWTNYLKGWQKRWFVLD--NGLLSYYKNKSSMRGKPRGTILLSGAV-ISE------------DDSDDKCFTIDTGG- 67 (91)
T ss_pred EEEEecccCCCceeeEEEEE--CCEEEEEecCccCCCCceEEEEeceEE-EEE------------CCCCCcEEEEEcCC-
Confidence 355553 3344588899997 446667554432 223333321 111 11125799998743
Q ss_pred CceEEEEeCCHHHHHHHHHHHHH
Q 001504 99 KRSLDLICKDKVEAEVWIAGLKA 121 (1065)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~ 121 (1065)
.+++-|.|++.+|++.|+..|+.
T Consensus 68 ~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 68 DKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CCEEEEECCCHHHHHHHHHHHHh
Confidence 49999999999999999999864
No 52
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=94.72 E-value=0.22 Score=44.81 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=52.7
Q ss_pred CcCeeeeEEEeCCCCEEEEecCCCC-----cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC-CCceEEEEeC
Q 001504 34 GKPKFYPFRLSNDETSLIWISSSGE-----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN-GKRSLDLICK 107 (1065)
Q Consensus 34 ~kpk~r~f~L~~d~~~l~W~~~~~~-----~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~-~~rtLDLva~ 107 (1065)
+..+.|+|.|..+ .|..++.... ..+.+..+. |..+.... ....+|.|++.+ ..+.+-|.|.
T Consensus 17 ~~w~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~---------~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 17 KRWKRRWFFLFDD--GLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS---------DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred cCceeeEEEEECC--EEEEEEcCCCCcCCCCEEEccceE-EEECCCCC---------CCCceEEEECCCCCcEEEEEEcC
Confidence 4567788888754 4555444322 245666665 55554432 235799999975 4689999999
Q ss_pred CHHHHHHHHHHHHH
Q 001504 108 DKVEAEVWIAGLKA 121 (1065)
Q Consensus 108 ~~~ea~~Wv~GL~~ 121 (1065)
+.+|++.|+..|+.
T Consensus 85 ~~~~~~~W~~al~~ 98 (99)
T cd00900 85 SEEEAQEWVEALQQ 98 (99)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998863
No 53
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.71 E-value=0.14 Score=47.82 Aligned_cols=74 Identities=32% Similarity=0.559 Sum_probs=49.9
Q ss_pred CCcCeeeeEEEeCCCCEEEEecCCCCc----cccccee--eecccccCChhHhhhcCCCCCCceEEEEEcCC------Cc
Q 001504 33 KGKPKFYPFRLSNDETSLIWISSSGER----SLKLASV--SKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG------KR 100 (1065)
Q Consensus 33 ~~kpk~r~f~L~~d~~~l~W~~~~~~~----~~~l~~I--~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~------~r 100 (1065)
+|--|.|.|.|..+ +|.|++-..+| -|+|..+ ++|..|--+. ..||.|++-++ .|
T Consensus 16 ~ggsK~~WFVLt~~--~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk-----------~~~FeLfnpd~rnvykd~k 82 (110)
T cd01256 16 KGGSKDYWFVLTSE--SLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSR-----------NHKFALFYPDGRNVYKDYK 82 (110)
T ss_pred cCCCcceEEEEecc--eeeeecccccccccceeeccccEEEeecccccCC-----------CcEEEEEcCcccccccchh
Confidence 44567888988766 57786544322 2666543 4555452221 37898876432 59
Q ss_pred eEEEEeCCHHHHHHHHHHH
Q 001504 101 SLDLICKDKVEAEVWIAGL 119 (1065)
Q Consensus 101 tLDLva~~~~ea~~Wv~GL 119 (1065)
+|+|.|.+.||.+.|-..+
T Consensus 83 ~lel~~~~~e~vdswkasf 101 (110)
T cd01256 83 QLELGCETLEEVDSWKASF 101 (110)
T ss_pred eeeecCCCHHHHHHHHHHH
Confidence 9999999999999998654
No 54
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=94.69 E-value=0.23 Score=47.29 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=56.3
Q ss_pred eEEEEecCCcCeeeeEEEeCCC----CEEEEecCC---------CCcccccceeeecccccCChhHhhhcCCCCCCceEE
Q 001504 26 QLLKYGRKGKPKFYPFRLSNDE----TSLIWISSS---------GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFS 92 (1065)
Q Consensus 26 ~l~K~~~~~kpk~r~f~L~~d~----~~l~W~~~~---------~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FS 92 (1065)
+|.|- +.| |.|+|.|..+. ..|.|++.. +.+.|+|.++..|..-.+ .....+|.
T Consensus 7 yL~K~--K~~-kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d----------~k~~~~f~ 73 (101)
T cd01257 7 YLRKQ--KSM-HKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD----------AKHRHLIA 73 (101)
T ss_pred EEeEe--cCc-EeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc----------cccCeEEE
Confidence 45554 333 66899998663 378886553 234678888777652111 12247899
Q ss_pred EEEcCCCceEEEEeCCHHHHHHHHHHHHH
Q 001504 93 LIYNNGKRSLDLICKDKVEAEVWIAGLKA 121 (1065)
Q Consensus 93 iiy~~~~rtLDLva~~~~ea~~Wv~GL~~ 121 (1065)
|+..+ ++.-|+|++++|.+.|+..|.-
T Consensus 74 i~t~d--r~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 74 LYTRD--EYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEeCC--ceEEEEeCCHHHHHHHHHHHhh
Confidence 98855 8999999999999999998853
No 55
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.26 E-value=0.26 Score=46.86 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=49.2
Q ss_pred hcCCeEEEEecCCcCeeeeEEEeCCCCEEEEecCCCCc---ccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001504 22 KKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSGER---SLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1065)
Q Consensus 22 ~~Gt~l~K~~~~~kpk~r~f~L~~d~~~l~W~~~~~~~---~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~ 98 (1065)
+.|-...+-...+.=+.|+|.|.+|..-+.++...... .++|..+. |..+. .. ........+|.|..-+-
T Consensus 3 k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~-v~~~~-~~-----~~~~~~~~~F~i~~~~~ 75 (102)
T cd01241 3 KEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFS-VAECQ-LM-----KTERPRPNTFIIRCLQW 75 (102)
T ss_pred EEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeE-Eeeee-ee-----eccCCCcceEEEEeccC
Confidence 34433333333333488899999876656565433222 23333331 11110 00 00111235788884321
Q ss_pred CceE--EEEeCCHHHHHHHHHHHHHH
Q 001504 99 KRSL--DLICKDKVEAEVWIAGLKAL 122 (1065)
Q Consensus 99 ~rtL--DLva~~~~ea~~Wv~GL~~L 122 (1065)
..++ -+.|++.+|++.|+..|+.+
T Consensus 76 ~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 76 TTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 1122 45799999999999999865
No 56
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.06 E-value=0.21 Score=61.82 Aligned_cols=105 Identities=16% Similarity=0.320 Sum_probs=79.8
Q ss_pred HHHHHhcCCeEEEEec---CCcCeeeeEEEeCCCCEEEEecC-CCCcccccceeeecccccCChh---------Hhhh-c
Q 001504 17 ALIALKKGAQLLKYGR---KGKPKFYPFRLSNDETSLIWISS-SGERSLKLASVSKIIPGQRTAV---------FQRY-L 82 (1065)
Q Consensus 17 ~l~~L~~Gt~l~K~~~---~~kpk~r~f~L~~d~~~l~W~~~-~~~~~~~l~~I~eI~~G~~t~~---------f~r~-~ 82 (1065)
....|+.|+.|+|+-- -+.| -.+++|+.+--|.|.-. ++--.+++..|++.|.|+.... |..- .
T Consensus 13 v~~~L~~G~~fikwddest~~~~--v~lrvDp~gffLYW~~q~~e~~~ldi~~i~d~r~g~~a~~pkd~klr~~~~~~~~ 90 (1189)
T KOG1265|consen 13 VTDILRDGSKFIKWDDESTTSTP--VTLRVDPNGFFLYWTYQNKEVDNLDISSIRDARTGRYAKLPKDPKLREVLELGPP 90 (1189)
T ss_pred ccHHHcCCceEEEeccccccccc--eEEEECCCceEEEEecCCCceeehhhhHHhhhhcchhccCCCCcccchheecCCc
Confidence 3456999999999933 3445 56899999999999544 4456688999999999965522 1111 1
Q ss_pred CCCCCCceEEEEEcCC---CceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 83 RPEKDYLSFSLIYNNG---KRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 83 ~~~~~~~~FSiiy~~~---~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
....+....+|++|.. ...++|||..++++.+|..||-.|+
T Consensus 91 d~s~eek~lTVvsG~d~vN~~f~nfv~~~~~~ak~w~~~~~~l~ 134 (1189)
T KOG1265|consen 91 DRSLEEKTLTVVSGPDLVNLTFLNFVAMQENVAKLWTAGLLKLA 134 (1189)
T ss_pred ccccccceEEEEecCCcccceEEEEeeeeHHHHHHHHHHHHHHH
Confidence 1134578899999875 5789999999999999999998877
No 57
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.76 E-value=0.39 Score=47.26 Aligned_cols=88 Identities=24% Similarity=0.301 Sum_probs=54.6
Q ss_pred eEEEEecC-CcCeeeeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC--
Q 001504 26 QLLKYGRK-GKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG-- 98 (1065)
Q Consensus 26 ~l~K~~~~-~kpk~r~f~L~~d~~~l~W~~~~~----~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~-- 98 (1065)
+|.|-+.. +.-+.|+|.|... .|.+++... ...|.|.++. |..... .....||.|+..++
T Consensus 5 ~L~K~~~~~~~WkkRwfvL~~~--~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~----------~~~~~~F~i~~~~~~~ 71 (125)
T cd01252 5 WLLKQGGRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENVS-IREVED----------PSKPFCFELFSPSDKQ 71 (125)
T ss_pred EEEEeCCCCCCeEeEEEEEECC--EEEEEcCCCCCCceEEEECCCcE-EEEccc----------CCCCeeEEEECCcccc
Confidence 45565432 3348889999744 577766533 3445665432 222111 11235777666432
Q ss_pred -----------------CceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001504 99 -----------------KRSLDLICKDKVEAEVWIAGLKALISSG 126 (1065)
Q Consensus 99 -----------------~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1065)
.++.-|.|++.+|++.|+..|+..+..+
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 3566799999999999999999988544
No 58
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=93.72 E-value=0.46 Score=44.27 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=47.0
Q ss_pred CeeeeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCCHHH
Q 001504 36 PKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVE 111 (1065)
Q Consensus 36 pk~r~f~L~~d~~~l~W~~~~~----~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~e 111 (1065)
=+.|+|.|.. ..|.+++... .+.|.|... .|..-. ......||.|... +.+++-|.|++++|
T Consensus 20 WkkrwfvL~~--~~L~yyk~~~~~~~~~~I~L~~~-~v~~~~----------~~~k~~~F~I~~~-~~~~~~f~a~s~~e 85 (96)
T cd01260 20 WARRWFVLKG--TTLYWYRSKQDEKAEGLIFLSGF-TIESAK----------EVKKKYAFKVCHP-VYKSFYFAAETLDD 85 (96)
T ss_pred ceeEEEEEEC--CEEEEECCCCCCccceEEEccCC-EEEEch----------hcCCceEEEECCC-CCcEEEEEeCCHHH
Confidence 4788999984 4677765443 334455433 121110 1123568999853 35899999999999
Q ss_pred HHHHHHHHHH
Q 001504 112 AEVWIAGLKA 121 (1065)
Q Consensus 112 a~~Wv~GL~~ 121 (1065)
++.|+..|+.
T Consensus 86 ~~~Wi~ai~~ 95 (96)
T cd01260 86 LSQWVNHLIT 95 (96)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 59
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.54 E-value=5.8 Score=47.81 Aligned_cols=69 Identities=26% Similarity=0.319 Sum_probs=51.3
Q ss_pred CEEEEEecC-CeEEEEEcCCcEE-EEeCCCCCccCCCCCcceeccEEeeccCCCCEEEEEeCCCeEEEEEeCCcEEE
Q 001504 284 DVHHIACGV-RHAALVTRQGEVF-TWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYT 358 (1065)
Q Consensus 284 ~V~~Ia~G~-~Hs~~LT~dG~Vy-~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~ 358 (1065)
++.+|++|. .-.-+||.+|.|| --|-....+.|..-. ++..|... ..++.|+.|....-+||.+|.||.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a-----~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQA-----LEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCcccc-----cceEEEEeccceEEEEecCCcEEE
Confidence 678999999 6778999999987 466655555554322 44444433 238999999999999999999986
No 60
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.23 E-value=1.9 Score=57.51 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=68.3
Q ss_pred cccCCCCEEEEE-ecCCEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeeEEEEcCCcc-eeeecCCe
Q 001504 500 PALIDYNFHKVA-CGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHV-AVLTSRNE 577 (1065)
Q Consensus 500 ~~l~~~~I~~Ia-~G~~htvaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Hs-~aLT~dG~ 577 (1065)
..+.+..|..++ .+.++.++|++.|++-..- .- ..|..+...-....|..|++-..|. ++||.+|+
T Consensus 698 ~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~-----k~-------g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~ 765 (1774)
T PF11725_consen 698 EGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ-----KP-------GRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGE 765 (1774)
T ss_pred cCCCcCcceeEEEEcCCceEEeccCCcccccc-----CC-------CCCccCCCCCCCcchhheeeccccceeEecCCCc
Confidence 344445555554 4667888888888776532 11 1144444333356799999998865 78999999
Q ss_pred EEE-----EeCCCCC-CCCCCCCCCCcccEEeccccCccEEEEecCCCccceEee
Q 001504 578 VYT-----WGKGANG-RLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAICL 626 (1065)
Q Consensus 578 Vyt-----WG~n~~G-QLG~G~~~~~~~P~~V~~l~~~~V~~IacG~~hT~al~~ 626 (1065)
+|. |=.+..| ++ .....|+.++ .+..|..+....+|.+.+..
T Consensus 766 Lf~~~k~~WQ~~~~~~~~-----~~~W~~v~lP--~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 766 LFRLPKEAWQGNAEGDQM-----AAKWQKVALP--DEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred eeecCHHHhhCcccCCcc-----ccCceeccCC--CCCchhhhhcCCCCceEEEe
Confidence 998 5444433 11 2334444444 56678888888888888764
No 61
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=92.53 E-value=0.87 Score=44.12 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=45.8
Q ss_pred eEEEEecC-CcC-eeeeEEEeCCCCEEEEecCC-CCc--ccccceeeec-cccc---CChhHhhh------cCCCCCCce
Q 001504 26 QLLKYGRK-GKP-KFYPFRLSNDETSLIWISSS-GER--SLKLASVSKI-IPGQ---RTAVFQRY------LRPEKDYLS 90 (1065)
Q Consensus 26 ~l~K~~~~-~kp-k~r~f~L~~d~~~l~W~~~~-~~~--~~~l~~I~eI-~~G~---~t~~f~r~------~~~~~~~~~ 90 (1065)
+|.|-..+ +++ +.|+|-|.. ...|.+++.. ..+ .+.......+ +.|. ..+.+... .........
T Consensus 4 ~l~K~~~~~~kgWk~RwFiL~k-~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (112)
T PF15413_consen 4 YLYKWGNKFGKGWKKRWFILRK-DGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKV 82 (112)
T ss_dssp EEEE--TTS-S--EEEEEEEE--TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEE
T ss_pred eEEEecCCCCcCccccEEEEEe-CCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCC
Confidence 35555444 443 778999988 7778887661 111 1111111111 1111 11111111 112344677
Q ss_pred EEEEEcCCCceEEEEeCCHHHHHHHHHHHHH
Q 001504 91 FSLIYNNGKRSLDLICKDKVEAEVWIAGLKA 121 (1065)
Q Consensus 91 FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~ 121 (1065)
|+|... .|+|.|.|++.+|...|+..|+.
T Consensus 83 ~~i~T~--~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 83 FSIFTP--TKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp EEEE-S--S-EEEEEESSHHHHHHHHHHHHH
T ss_pred cEEECC--CcEEEEEECCHHHHHHHHHHHHh
Confidence 887554 59999999999999999999864
No 62
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=90.84 E-value=0.036 Score=65.57 Aligned_cols=67 Identities=28% Similarity=0.679 Sum_probs=50.5
Q ss_pred eeeccccc----cccccccc-cccccccccccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHhh
Q 001504 626 LHKWVSSA----EQLQCSAC-RQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1065)
Q Consensus 626 ~~~wvs~~----d~s~C~~C-~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~ 694 (1065)
.+.|+++. .-..|+.| +..|....|+|||+.||...|.+|...+.... .-....|-++||.|+.+-.
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqE--d~gse~~Adg~Dq~psvsi 384 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQE--DCGSENPADGCDQCPSVSI 384 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhh--cccccCcccccccccchhh
Confidence 36788877 45678776 45687778899999999999999998776332 1223578899999996544
No 63
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=90.12 E-value=18 Score=43.85 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=65.0
Q ss_pred ecCCeEEEEEcCCcEEEEeCCCCCccCCCCCccee-ccEEeeccCCCCEEEEEeCC-CeEEEEEeCCcEEE-eCCCCCCC
Q 001504 290 CGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIV-QPHLLESLTMTSVDFVTCGE-FHTCAVTMAGELYT-WGDGTHNA 366 (1065)
Q Consensus 290 ~G~~Hs~~LT~dG~Vy~WG~N~~GqLG~g~~~~~~-~P~~V~~l~~~~I~~Va~G~-~hs~aLT~dG~Vy~-WG~n~~~~ 366 (1065)
.|...+.+|+.+|.||-= -|.......- .-+.|.. ...+.+|++|. ....+|+.+|.||. -|-. ..
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~--~t~L~qISagPtg~VwAvt~nG~vf~R~GVs--Rq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICP--YTDLSQISAGPTGVVWAVTENGAVFYREGVS--RQ 258 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCC--CCccceEeecCcceEEEEeeCCcEEEEeccc--cc
Confidence 455566677888877742 1221111111 1111111 13578999998 77789999999864 4544 34
Q ss_pred CcCCCCCCcceeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEE
Q 001504 367 GLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTF 414 (1065)
Q Consensus 367 GqLG~g~~~~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~w 414 (1065)
.+.|..-. +..+|+.. ..++.|+.|....-+||.+|.||.=
T Consensus 259 Np~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCCchhh-hccCcccc------cceEEEEeccceEEEEecCCcEEEE
Confidence 44443322 23333332 2499999999999999999999853
No 64
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.89 E-value=2 Score=40.74 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=46.9
Q ss_pred eeeeEEEeC--CCCEEEEecCC-CCc---ccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCCHH
Q 001504 37 KFYPFRLSN--DETSLIWISSS-GER---SLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKV 110 (1065)
Q Consensus 37 k~r~f~L~~--d~~~l~W~~~~-~~~---~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~ 110 (1065)
|.|+|.|.. ...+|.+.+.. ..+ -++|..+ .|++-+++. ..-..||-|+...+ .+.-.+|.+.+
T Consensus 17 K~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~ds~--------~~r~~cFel~~~~~-~~~y~~~a~~~ 86 (98)
T cd01245 17 KTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHDSL--------FGRPNCFQIVERAL-PTVYYSCRSSE 86 (98)
T ss_pred ceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccccc--------cCCCeEEEEecCCC-CeEEEEeCCHH
Confidence 678899853 45667664433 222 2445555 555544431 11247999987543 25567777779
Q ss_pred HHHHHHHHHHH
Q 001504 111 EAEVWIAGLKA 121 (1065)
Q Consensus 111 ea~~Wv~GL~~ 121 (1065)
|++.||..|+.
T Consensus 87 er~~Wi~~l~~ 97 (98)
T cd01245 87 ERDKWIESLQA 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 65
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=89.29 E-value=0.6 Score=57.02 Aligned_cols=96 Identities=24% Similarity=0.346 Sum_probs=65.9
Q ss_pred HhcCCeEEEEec----CCcC--eeeeEEEeCCCCEEEEecCCC---CcccccceeeecccccCChhHhhhcCCCCCCceE
Q 001504 21 LKKGAQLLKYGR----KGKP--KFYPFRLSNDETSLIWISSSG---ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSF 91 (1065)
Q Consensus 21 L~~Gt~l~K~~~----~~kp--k~r~f~L~~d~~~l~W~~~~~---~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~F 91 (1065)
.++|-.|+|+-+ -++. |.|+|+|... .|.|-++.. ...|+|++|+.|..=. -..++-..+|
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~--~Ls~~Ksp~~q~~~~Ipl~nI~avEkle--------e~sF~~knv~ 634 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTE--ELSYAKSPGKQPIYTIPLSNIRAVEKLE--------EKSFKMKNVF 634 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccc--eeEEecCCccCcccceeHHHHHHHHHhh--------hhccCCCceE
Confidence 467778888822 2322 5688887654 577855433 3456777775443210 1125557899
Q ss_pred EEEEcCCCceEEEEeCCHHHHHHHHHHHHHHHHccCC
Q 001504 92 SLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQG 128 (1065)
Q Consensus 92 Siiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~~ 128 (1065)
.|||.+ |+|-|.|++-.|++.|+..|+.....++.
T Consensus 635 qVV~~d--rtly~Q~~n~vEandWldaL~kvs~~N~~ 669 (800)
T KOG2059|consen 635 QVVHTD--RTLYVQAKNCVEANDWLDALRKVSCCNQN 669 (800)
T ss_pred EEEecC--cceeEecCCchHHHHHHHHHHHHhccCcc
Confidence 999987 79999999999999999999887755543
No 66
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=89.12 E-value=30 Score=36.72 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~ 894 (1065)
|-.+....++.|+.+.|.++.+||+++|++|+|..+-+ ..|=.|++-+|++..
T Consensus 68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt---ta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT---TACFQANQKLKSIKE 120 (272)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44444556778889999999999999999999866532 234455555555543
No 67
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.06 E-value=2 Score=42.21 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=48.0
Q ss_pred eeeeEEEeCCCCEEEEecCCCC----cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCCHHHH
Q 001504 37 KFYPFRLSNDETSLIWISSSGE----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEA 112 (1065)
Q Consensus 37 k~r~f~L~~d~~~l~W~~~~~~----~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~ea 112 (1065)
+.|.|.|. ...|.+.+...+ ..|.++.--.|..|.....-.....++....-+.|...+..|+|-|.|.|+.++
T Consensus 34 ~kRWFvlr--~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~ 111 (121)
T cd01254 34 QKRWFIVK--ESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRKL 111 (121)
T ss_pred cceeEEEe--CCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHHH
Confidence 55778777 456666544332 234444445555555442211111111122234444455679999999999999
Q ss_pred HHHHHHHHH
Q 001504 113 EVWIAGLKA 121 (1065)
Q Consensus 113 ~~Wv~GL~~ 121 (1065)
+.|+..|+.
T Consensus 112 ~~Wi~~i~~ 120 (121)
T cd01254 112 KQWMASIED 120 (121)
T ss_pred HHHHHHHHh
Confidence 999999863
No 68
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=88.60 E-value=2.8 Score=45.02 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVE-------SLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1065)
Q Consensus 837 ~~~~~~~~~q~~-------~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~ 899 (1065)
|+|+++|+.|.+ .+.++-+.++.++++...++++|+.--..-+. ++.++|++.|-..|+++
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~--k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTE--KVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 556666666543 55666666677777777777776665554332 36667777777666654
No 69
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.28 E-value=3.9 Score=39.74 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=57.2
Q ss_pred HHhcCCeEEEEec-CCcCeeeeEEEeCCCCEEEEecCCCCc--------cccccee-----eecccccCChhHhhhcCCC
Q 001504 20 ALKKGAQLLKYGR-KGKPKFYPFRLSNDETSLIWISSSGER--------SLKLASV-----SKIIPGQRTAVFQRYLRPE 85 (1065)
Q Consensus 20 ~L~~Gt~l~K~~~-~~kpk~r~f~L~~d~~~l~W~~~~~~~--------~~~l~~I-----~eI~~G~~t~~f~r~~~~~ 85 (1065)
.++.|.. +|+.+ +++++.|+|.|=.|.. |..++..... .+.+.+. -+|..-.+++
T Consensus 4 lI~EG~L-~ki~~~~~~~q~R~~FLFd~~L-i~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~--------- 72 (112)
T cd01261 4 FIMEGTL-TRVGPSKKAKHERHVFLFDGLM-VLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS--------- 72 (112)
T ss_pred ccccCcE-EEEecccCCcceEEEEEecCeE-EEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc---------
Confidence 3455654 57753 5778899999977755 4444322111 1222222 1222222221
Q ss_pred CCCceEEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 001504 86 KDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1065)
Q Consensus 86 ~~~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1065)
.....|-|+-.+ .+++-|.|++++|-+.|+..|..++.
T Consensus 73 ~~knaF~I~~~~-~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 73 EYKNAFEIILKD-GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred ccCceEEEEcCC-CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 125689998764 47999999999999999999987764
No 70
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=87.30 E-value=0.37 Score=63.14 Aligned_cols=47 Identities=32% Similarity=0.811 Sum_probs=37.3
Q ss_pred cccccccccccccccccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHhhh
Q 001504 636 LQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNK 695 (1065)
Q Consensus 636 s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~~ 695 (1065)
..|..|. +...++|||+.||.+||..|. +...+..|||..|+.+...
T Consensus 6 ~~~~~~~---t~~~~~~~~~~~g~~~~~~~~----------~~~~~~i~~~~~~~~~~~~ 52 (1598)
T KOG0230|consen 6 NVCYDCD---TSVNRRHHCRVCGRVFCSKCQ----------DSPETSIRVCNECRGQWEQ 52 (1598)
T ss_pred cchhccc---cccccCCCCcccCceeccccC----------CCCccceeehhhhhhhccc
Confidence 3566666 666789999999999999996 2333589999999998765
No 71
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=16 Score=41.53 Aligned_cols=49 Identities=35% Similarity=0.340 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVA 875 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a 875 (1065)
+++|.+.|.|+.-.++|++.++.|+++.......+.-+++|.+||...|
T Consensus 235 ~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~ 283 (365)
T KOG2391|consen 235 ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKA 283 (365)
T ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 4555666666666666666666666666666666666666666644433
No 72
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.76 E-value=0.096 Score=65.80 Aligned_cols=131 Identities=18% Similarity=0.276 Sum_probs=88.6
Q ss_pred CCCCEEEEEecCCeEEEEEcCCcEEEEeCCCCCccCCC--CCcceeccEEe-eccCCCCEEEEEeCCCeEEEEEeCCcEE
Q 001504 281 VVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHG--VGKDIVQPHLL-ESLTMTSVDFVTCGEFHTCAVTMAGELY 357 (1065)
Q Consensus 281 ~~~~V~~Ia~G~~Hs~~LT~dG~Vy~WG~N~~GqLG~g--~~~~~~~P~~V-~~l~~~~I~~Va~G~~hs~aLT~dG~Vy 357 (1065)
...+++.|.+-++..++|...|++|.|-....--|-.. .......|..- -.+.+.+|+.+++..-..-++|++|+|.
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 34567778787888899999999999987664433321 12233334321 2456788999999999999999999999
Q ss_pred EeCCCCCCCCcCCCCCC--cceeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCC
Q 001504 358 TWGDGTHNAGLLGHGTD--VSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTF 419 (1065)
Q Consensus 358 ~WG~n~~~~GqLG~g~~--~~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~ 419 (1065)
+|=+. +|.+.. ..+..-+++. ..+..+++..|-..|+++..++.-||.||---+
T Consensus 452 sWlDE------cgagV~fkLa~ea~Tkie--ed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 452 SWLDE------CGAGVAFKLAHEAQTKIE--EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred hHHhh------hhhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 99543 222211 1111122222 346677888888899999999999999995433
No 73
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.33 E-value=7.8 Score=37.40 Aligned_cols=39 Identities=26% Similarity=0.414 Sum_probs=33.8
Q ss_pred CCCCceEEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 85 EKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 85 ~~~~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
..-.+-|-|.|.+..++|-|.|++.+|.+.||..|..-|
T Consensus 72 kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 72 KEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred ccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 344688999998878999999999999999999987554
No 74
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=85.04 E-value=5.9 Score=38.00 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=53.8
Q ss_pred eEEEEecCCcCeeeeEEEeCCCCEEEEecC--C--C---CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001504 26 QLLKYGRKGKPKFYPFRLSNDETSLIWISS--S--G---ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1065)
Q Consensus 26 ~l~K~~~~~kpk~r~f~L~~d~~~l~W~~~--~--~---~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~ 98 (1065)
.|+|+.|+ +|+.|+|.|=+| .|.+.+. . + ...++|.++. |+.-.+. ..-..+|.|...
T Consensus 9 ~L~K~~rk-~~~~R~ffLFnD--~LvY~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~---------~~~~n~f~I~~~-- 73 (104)
T cd01218 9 VLTKMCRK-KPKQRQFFLFND--ILVYGNIVISKKKYNKQHILPLEGVQ-VESIEDD---------GIERNGWIIKTP-- 73 (104)
T ss_pred cEEEeecC-CCceEEEEEecC--EEEEEEeecCCceeeEeeEEEccceE-EEecCCc---------ccccceEEEecC--
Confidence 46788755 477789999988 4555321 1 1 1234444331 1111111 111467887774
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001504 99 KRSLDLICKDKVEAEVWIAGLKALISS 125 (1065)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1065)
.|++-+.|.+++|-+.|+..|+.-+.+
T Consensus 74 ~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999877643
No 75
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.48 E-value=4.2 Score=46.01 Aligned_cols=60 Identities=28% Similarity=0.446 Sum_probs=43.9
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 830 KKTNELLNQ--EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 830 ~~~~~~~~~--~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
+|+++...| ||.+|.+||-.|.++|++.-.|-+++.+.+.. +|+.=..|+++|+++-+|-
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~--------------ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA--------------SKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 555555544 88888888888888888888887777776654 4555566888888887774
No 76
>PLN02153 epithiospecifier protein
Probab=83.12 E-value=95 Score=35.75 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=11.6
Q ss_pred cceeeecCCeEEEEeC
Q 001504 568 HVAVLTSRNEVYTWGK 583 (1065)
Q Consensus 568 Hs~aLT~dG~VytWG~ 583 (1065)
+++.+..+++||+||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 4556667779999983
No 77
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=83.10 E-value=8.9 Score=36.99 Aligned_cols=37 Identities=14% Similarity=0.382 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001504 89 LSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1065)
Q Consensus 89 ~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1065)
.+|.+........+.|-|.|..+.+.|++|+++|+..
T Consensus 69 ~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 69 ERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred eEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 4555555555788999999999999999999999953
No 78
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=82.97 E-value=0.94 Score=44.31 Aligned_cols=51 Identities=24% Similarity=0.716 Sum_probs=39.0
Q ss_pred ccccccccccccccc-ccccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHh
Q 001504 634 EQLQCSACRQAFGFT-RKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKL 693 (1065)
Q Consensus 634 d~s~C~~C~~~F~f~-rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l 693 (1065)
+...|..|..+|+|. ...+.|..|...+|..|+.. ...++.-+|.-|+...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHHH
Confidence 456899999999966 46799999999999999753 3336667999998754
No 79
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.60 E-value=9.1 Score=36.78 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=44.6
Q ss_pred CCcCeeeeEEEeCCCCEEEEecCCCC----cccccceeeecccccCChhHhhhcCCCCCCceEEEEEc----CCCceEEE
Q 001504 33 KGKPKFYPFRLSNDETSLIWISSSGE----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN----NGKRSLDL 104 (1065)
Q Consensus 33 ~~kpk~r~f~L~~d~~~l~W~~~~~~----~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~----~~~rtLDL 104 (1065)
+++ |.|+|.|. ...|.+++.+.+ ..+.|... |..- -.+...+...|+|... ++.++.-|
T Consensus 18 K~~-KrrwF~lk--~~~L~YyK~kee~~~~p~i~lnl~-----gcev-----~~dv~~~~~kf~I~l~~ps~~~~r~y~l 84 (106)
T cd01237 18 KGY-KQYWFTFR--DTSISYYKSKEDSNGAPIGQLNLK-----GCEV-----TPDVNVAQQKFHIKLLIPTAEGMNEVWL 84 (106)
T ss_pred hhh-eeEEEEEe--CCEEEEEccchhcCCCCeEEEecC-----ceEE-----cccccccccceEEEEecCCccCCeEEEE
Confidence 443 77788887 456766655432 22222211 1111 0111122445666553 34689999
Q ss_pred EeCCHHHHHHHHHHHHH
Q 001504 105 ICKDKVEAEVWIAGLKA 121 (1065)
Q Consensus 105 va~~~~ea~~Wv~GL~~ 121 (1065)
-|+++++.+.|+.+++.
T Consensus 85 ~cdsEeqya~Wmaa~rl 101 (106)
T cd01237 85 RCDNEKQYAKWMAACRL 101 (106)
T ss_pred ECCCHHHHHHHHHHHHH
Confidence 99999999999999863
No 80
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.14 E-value=6 Score=34.55 Aligned_cols=35 Identities=34% Similarity=0.363 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELE 860 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 860 (1065)
+++||..|..|.||++.++.+.+.|.++-++...|
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665555544443
No 81
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=79.67 E-value=7.2 Score=41.42 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
++..+++.+++.|+++.+..+.+++.++.+++++ ...++++..+.+..+-++.|..+++.+...|
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555444 2234444444444444444444444444333
No 82
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.46 E-value=13 Score=37.63 Aligned_cols=59 Identities=27% Similarity=0.293 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAA 885 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~ 885 (1065)
.+.+..-..-|+++..++..+|.+|.++.++++.+|.++..+++++-..+.+ +.+....
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee-~~~~~~~ 74 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE-SEKRKSN 74 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHh
Confidence 3556666777888888888899999999999999999999999887776544 4554433
No 83
>PHA01750 hypothetical protein
Probab=79.33 E-value=5 Score=34.58 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~ 869 (1065)
..|+.++|...|+.|++.++.+-+..++++.+.+||++
T Consensus 36 vkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 36 VKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 46788999999999999999998888888888888764
No 84
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.08 E-value=3 Score=33.75 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=25.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCE 855 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 855 (1065)
.-|.|+.-++.|.+|+..|++||..|+.+.+
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3577888888999999999999988887654
No 85
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=79.00 E-value=15 Score=32.27 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001504 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~ 899 (1065)
++.|..+|+.|-+.|+.+..|=..+..++.....-=+.=-+|.-+|..=|++|..+||.|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455666666666666666666665555433211111111122234555577788888766
No 86
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.62 E-value=20 Score=35.29 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=41.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
..++.|...-.-+--|+..||.|+..|..+-+....||=++.+..++. ++.+.-+..|..++++|-.|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-----------~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-----------RALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666777777777777777777777777766655443 22333355566666655544
No 87
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.85 E-value=19 Score=36.53 Aligned_cols=51 Identities=35% Similarity=0.440 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQ-----------------VESLRQRCEFQELELQKSTKKAQEAMAVAA 876 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q-----------------~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~ 876 (1065)
+.+|.+-|..|-.||.+|+.+ ++.|.++.++++.+|....++++++..-.+
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777664 356888888888888888888887766543
No 88
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.55 E-value=13 Score=45.33 Aligned_cols=45 Identities=36% Similarity=0.485 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
..+|.+.|..|.+|+.+|+.+|+.|+...+....+..++.++.++
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke 196 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888888999999999999988888877777777666665443
No 89
>PRK15396 murein lipoprotein; Provisional
Probab=76.53 E-value=6.7 Score=35.57 Aligned_cols=39 Identities=13% Similarity=0.306 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK 881 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~ 881 (1065)
+|.+|.+||..|..+-++...+++.....++. |.+|+.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~----a~~eA~r 64 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA----AKDDAAR 64 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 78889999999998888888888877665555 6677776
No 90
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=76.49 E-value=7.1 Score=44.92 Aligned_cols=108 Identities=20% Similarity=0.339 Sum_probs=70.3
Q ss_pred ccHHHHHHHHhcC--C--eEEEEecCCcCeeeeEEEeCCCCEEEEecCCCC-------------cccccc-eeeeccccc
Q 001504 12 RDIEQALIALKKG--A--QLLKYGRKGKPKFYPFRLSNDETSLIWISSSGE-------------RSLKLA-SVSKIIPGQ 73 (1065)
Q Consensus 12 ~~~~~~l~~L~~G--t--~l~K~~~~~kpk~r~f~L~~d~~~l~W~~~~~~-------------~~~~l~-~I~eI~~G~ 73 (1065)
...|+|+++||+- . .=+||.|--.|+++.= .--..|-|...... +.+... |.+ +++=+
T Consensus 146 AtHdeAVqaLKraGkeV~levKy~REvtPy~kk~---sivs~vgWe~~~p~sp~~~~~~dsp~~~~~~~~~d~k-~IpLK 221 (506)
T KOG3551|consen 146 ATHDEAVQALKRAGKEVLLEVKYMREVTPYFKKE---SIVSEVGWEDPAPQSPSLGGSEDSPSPKHINFRKDRK-TIPLK 221 (506)
T ss_pred cchHHHHHHHHhhCceeeeeeeeehhcchhhccC---ccccccCcCCCCccCcccCCCCCCCCCCccccccccc-ccchh
Confidence 3468999999875 2 2357777777777643 33445778655321 111111 111 11222
Q ss_pred CChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 74 RTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 74 ~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
=+-+-|+....++|++||-|---++..||=|=|+|.+||+.|+..|.+-+
T Consensus 222 m~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v 271 (506)
T KOG3551|consen 222 MAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANV 271 (506)
T ss_pred hHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHH
Confidence 23333444556889999999988999999999999999999999987655
No 91
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.85 E-value=24 Score=39.14 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
.-|.+|+.+|+.|++.|+.+.++++..+...++++
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el 86 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQEL 86 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444443
No 92
>PLN02153 epithiospecifier protein
Probab=75.81 E-value=1.6e+02 Score=33.95 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=12.5
Q ss_pred CeEEEEEeCCcEEEeCCC
Q 001504 345 FHTCAVTMAGELYTWGDG 362 (1065)
Q Consensus 345 ~hs~aLT~dG~Vy~WG~n 362 (1065)
.|++++ .+++||++|..
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566555 57899999864
No 93
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.48 E-value=13 Score=36.20 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCceEEEEEcCCC---ceEEEEeCCHHHHHHHHHHHHHHHH
Q 001504 86 KDYLSFSLIYNNGK---RSLDLICKDKVEAEVWIAGLKALIS 124 (1065)
Q Consensus 86 ~~~~~FSiiy~~~~---rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1065)
.+.+.|.|.++++. .+.-|.|.+.++-+.|+.-|+-++.
T Consensus 72 gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 72 GDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 45799999998765 6778999999999999999998874
No 94
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=75.10 E-value=9.3 Score=51.50 Aligned_cols=72 Identities=10% Similarity=0.060 Sum_probs=44.1
Q ss_pred CCCEEEEEecCCEE-EEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeeEEEEcCCcceeeecCC
Q 001504 504 DYNFHKVACGHSLT-VGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRN 576 (1065)
Q Consensus 504 ~~~I~~Ia~G~~ht-vaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLT~dG 576 (1065)
.-.|+.|++-..|. +|||.+|+||..=.-.+-..-.+.......++|.. +.+..|..+....+|.+.+.-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~l-P~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVAL-PDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccC-CCCCchhhhhcCCCCceEEEecC
Confidence 35799999998865 68999999997532221111111111112233332 24678999999999988877544
No 95
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.87 E-value=26 Score=31.41 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~ 898 (1065)
+=.+..+|..||..|+.+...|.+.-+.+..|.++++. .+.+.++=|++|-..|++
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~--------------e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ--------------ERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhhc
Confidence 33455566667777777666666555555555555542 234566668888777765
No 96
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.41 E-value=13 Score=46.28 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=40.2
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 819 LSFSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1065)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~ 869 (1065)
++.-+..++++.+.-|+..-|+.+|+++++.+.++...+--|-|++.-|++
T Consensus 467 ~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlk 517 (1118)
T KOG1029|consen 467 ITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLK 517 (1118)
T ss_pred cchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345678899999999999999999999999888887776666665555443
No 97
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.28 E-value=33 Score=34.90 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRC 854 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~ 854 (1065)
.|+.++.+|+++++.|+..-
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~ 75 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDV 75 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33344444444333333333
No 98
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=73.49 E-value=10 Score=46.00 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=56.8
Q ss_pred CCeEEEEecCCcCeeeeEEEeCCCCEEEEe-cC----CCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001504 24 GAQLLKYGRKGKPKFYPFRLSNDETSLIWI-SS----SGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1065)
Q Consensus 24 Gt~l~K~~~~~kpk~r~f~L~~d~~~l~W~-~~----~~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~ 98 (1065)
..++.|+....+-+.|+|.+..+...+.-. .+ ...+.+.+.+|.+| ++++..+. -+...||.|-..++
T Consensus 380 ~G~l~k~~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v-----~pv~~~~~--~~~~~~~~i~~~~~ 452 (478)
T PTZ00267 380 GGYLYKYSSDMRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDV-----FPVPEVYS--QKHPNQLVLWFNNG 452 (478)
T ss_pred ceEEeccCCCcchhhheEEecCCceEEEeccccccCCCCCccccHHHhccc-----ccccHHhc--CCCCceEEEEecCC
Confidence 456778766555688899887654444321 11 12344556666544 22211111 12367899977654
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 99 KRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
+.+-++|++++|++.|+..|+..+
T Consensus 453 -~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 453 -QKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred -cEEEEecCChHHHHHHHHHHHHHh
Confidence 467788899999999999998654
No 99
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.83 E-value=68 Score=42.82 Aligned_cols=217 Identities=16% Similarity=0.118 Sum_probs=110.8
Q ss_pred EEEEcCCcEEEEeCCCCCccCCCCCcc--eeccEEeeccCCCCEEEEEeCCCeEEEEEeCCcEEEeCCCCCCCCcCCCCC
Q 001504 296 ALVTRQGEVFTWGEESGGRLGHGVGKD--IVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGT 373 (1065)
Q Consensus 296 ~~LT~dG~Vy~WG~N~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~ 373 (1065)
+-+|-|.++|.|-.++.+++-.-++.. +..-.+|..-++.-+..| .|.++|..--+|+..|-.. .....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~-~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSF-DEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEe-ccccCcccc
Confidence 578999999999999877764432211 111222222222222222 5889998888999988542 122222221
Q ss_pred CcceeeeeeecCCCCCCcEEEEEecCCeEEEEe-cCCcEEEE----eCCCCCc-cCCCCC----CCcccceeecc--ccc
Q 001504 374 DVSHWIPKRISGPLEGLQVASVTCGPWHTALIT-STGQLFTF----GDGTFGV-LGHGDR----KNVSYPREVES--LSG 441 (1065)
Q Consensus 374 ~~~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt-~dG~Vy~w----G~N~~GQ-LG~g~~----~~~~~P~~V~~--l~~ 441 (1065)
.... +..+..+..|..|.+-.+-=++++ .+|.||-. +++.|++ +-.-+. -....|..+.. ...
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 112234556666665444444444 56655433 3455555 111111 11223442221 224
Q ss_pred ceEEEEecCCceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCCC---------cccceEecccCCCCEEEEEe
Q 001504 442 LRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEP---------RLKPTCVPALIDYNFHKVAC 512 (1065)
Q Consensus 442 ~~I~~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~~---------~~~P~~V~~l~~~~I~~Ia~ 512 (1065)
..|.+|+.+....+..+- +..|.+=+|--+.+|+-+.-.... ...-..+....-..|++|+.
T Consensus 243 dpI~qi~ID~SR~IlY~l---------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~ 313 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVL---------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISP 313 (1311)
T ss_pred CcceeeEeccccceeeee---------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecc
Confidence 578999998888887754 667887777655555443321100 00000111111134555543
Q ss_pred ------cCCEEEEEecCC-cEEEEeC
Q 001504 513 ------GHSLTVGLTTSG-HVFTMGS 531 (1065)
Q Consensus 513 ------G~~htvaLT~dG-~Vy~wGs 531 (1065)
-.-|.+|+|..| ++|.=|+
T Consensus 314 l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 314 LSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cCcccccceeEEEEecCCeEEEEecc
Confidence 356889999999 5666554
No 100
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=72.81 E-value=30 Score=32.53 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCceEEEEeCCHHHHHHHHHHHHH
Q 001504 88 YLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKA 121 (1065)
Q Consensus 88 ~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~ 121 (1065)
..+|.|... ..+++=|.|++.++++.|+..|+.
T Consensus 71 ~~~F~l~~~-~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 71 KHVFRLRLP-DGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred ceEEEEEec-CCCEEEEECCCHHHHHHHHHHHhc
Confidence 478999864 458899999999999999999864
No 101
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.90 E-value=9.6 Score=33.99 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
..+++|+..|++|++.|+++-+.++.+++++++
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367788888888888888888888888887744
No 102
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.72 E-value=24 Score=33.65 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
.+.+|+..|-.|.+.|..+.+.+..+.-..+|++..
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~ 61 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGK 61 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555555555555555555555555555554433
No 103
>PRK14161 heat shock protein GrpE; Provisional
Probab=71.65 E-value=23 Score=37.30 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=39.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
+.+-+.+.-+.+.+|+..|++|++.|+.+.....+|++.+.|+.+.....+.+
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~ 65 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKD 65 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667788888899999999999888889999888887664444433
No 104
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=71.13 E-value=9.5 Score=36.10 Aligned_cols=37 Identities=27% Similarity=0.516 Sum_probs=32.4
Q ss_pred CCceEEEEEcCC-CceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 87 DYLSFSLIYNNG-KRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 87 ~~~~FSiiy~~~-~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
+.++|.|+..++ .+++.|-|++.|+-+.|+..|+.+|
T Consensus 58 d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 58 EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 369999988754 4699999999999999999999877
No 105
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=70.80 E-value=31 Score=36.86 Aligned_cols=65 Identities=25% Similarity=0.344 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV----AAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~----a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
|..+|..++..++.+.+..+.+|+.+.++++-+... ...|-.|.++|.+-++.|..+++.+-.+|
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999999999999998766554 44667778889999999988888776654
No 106
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.64 E-value=29 Score=38.91 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=33.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~ 869 (1065)
....++...+.|.+++.+++.+++.++++.+.+..+++...+.++
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777778888888888888888888777777777666554
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=69.60 E-value=30 Score=36.65 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=35.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~ 869 (1065)
.+.+|.-.|.-|..|+.+|+..|+...+-...+-.||..+.++++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889999999999999988777777777777776666643
No 108
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=69.37 E-value=22 Score=33.92 Aligned_cols=64 Identities=27% Similarity=0.237 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 840 VLKLRAQVESLRQRCEFQELELQKSTKKA-QEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~~~k~~-~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
+..-+++...+.+..+..+.||+.++..| +||..|++++-..+-++..=...|..||++-...+
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l 67 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALL 67 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445677788888888999999999996 99999988766444344444555666666654444
No 109
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.18 E-value=47 Score=33.75 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQ 862 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 862 (1065)
...-|..|+.+|..+++.|+.+.+..+.++.
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443333333
No 110
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.18 E-value=30 Score=33.84 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=55.8
Q ss_pred hcCCeEEEEecCCcCeeeeEEEeCCCCEEEEecCCCC---------cccccceeeeccccc--CChhHhhhcCCCCCCce
Q 001504 22 KKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSGE---------RSLKLASVSKIIPGQ--RTAVFQRYLRPEKDYLS 90 (1065)
Q Consensus 22 ~~Gt~l~K~~~~~kpk~r~f~L~~d~~~l~W~~~~~~---------~~~~l~~I~eI~~G~--~t~~f~r~~~~~~~~~~ 90 (1065)
..|..=+|---+++|+.|+..| =|...|..+..... ..+.|.++ .|.... +++. ....-..+
T Consensus 6 ~DGelk~k~~~~~k~k~RyiFL-FDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~-~I~~~~~~d~~~-----~~~~~~~~ 78 (116)
T cd01223 6 LDGEVRIKASEDQKTKLRYIFL-FDKAVIVCKALGDNTGDMQYTYKDIHDLADY-KIENNPSRDTEG-----RDTRWKYG 78 (116)
T ss_pred cCCceEEeEeccCCCceeEEEE-ecceEEEEEecCCCCCCccEEhHHhhhhhee-eeEecCccCccc-----CCcceEEE
Confidence 3444333333457899998877 45566666533221 11222221 011111 1110 00112458
Q ss_pred EEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 001504 91 FSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1065)
Q Consensus 91 FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1065)
|-|+...+...+.|.|+++||.+.|+..|..-++
T Consensus 79 f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 79 FYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred EEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 9999988778899999999999999999865554
No 111
>PRK11637 AmiB activator; Provisional
Probab=68.57 E-value=30 Score=41.46 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
.+|+..++.++..+.++.+..+.+|+...+++
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=68.14 E-value=2.8e+02 Score=33.67 Aligned_cols=87 Identities=24% Similarity=0.288 Sum_probs=48.5
Q ss_pred EEEecCCeEEEEEcCCcEEEEeCCCCCccCCCCCcceeccEEeeccCCCCEEEEEeCCCeE-EEEEeCCcEEEeCCCCCC
Q 001504 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHT-CAVTMAGELYTWGDGTHN 365 (1065)
Q Consensus 287 ~Ia~G~~Hs~~LT~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs-~aLT~dG~Vy~WG~n~~~ 365 (1065)
-|.||..|.++.+-.|..+.=-..- ++......|..|..+++-- +-=+.+|.++.|+.+.+
T Consensus 216 iit~Gk~H~~Fw~~~~~~l~k~~~~-----------------fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~- 277 (626)
T KOG2106|consen 216 IITCGKGHLYFWTLRGGSLVKRQGI-----------------FEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN- 277 (626)
T ss_pred EEEeCCceEEEEEccCCceEEEeec-----------------cccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-
Confidence 4899999998887777554332111 1111112344444444332 33356789999987521
Q ss_pred CCcCCCCCCcceeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEE
Q 001504 366 AGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFT 413 (1065)
Q Consensus 366 ~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~ 413 (1065)
++. +-+.+.-|.-+++.+..+|.|.+
T Consensus 278 ----------------~~~------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 278 ----------------RIS------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred ----------------eEE------eEeeecCCceEEEEEecCccEee
Confidence 111 11224556667788777887776
No 113
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.83 E-value=16 Score=37.87 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
-|..|+.+|++|+..|+..+..++.||..+.+.+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4556788899999999999998888888887753
No 114
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=67.78 E-value=61 Score=31.69 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
.....+.+.++-..|+..-..|......-+.-|+....+...|...|.+|...+..-..-|+-|+.+|..|-..
T Consensus 23 ~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~ 96 (126)
T PF13863_consen 23 IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666666666666666677777777778888888888888777777788888887766544
No 115
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=67.47 E-value=21 Score=33.63 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=50.5
Q ss_pred HhcCCeEEEEecCCcCeeeeEEEeCCCCEEEEec-----CCC-Cc-----ccccceeeecccccCChhHhhhcCCCCCCc
Q 001504 21 LKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWIS-----SSG-ER-----SLKLASVSKIIPGQRTAVFQRYLRPEKDYL 89 (1065)
Q Consensus 21 L~~Gt~l~K~~~~~kpk~r~f~L~~d~~~l~W~~-----~~~-~~-----~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~ 89 (1065)
|.+-..|+|+. +|+||.|.|.|-.|- |.+.+ ..+ .+ .|+|.+|.=... .|+-.
T Consensus 3 Lv~eg~lvel~-~~~rK~R~~FLFnDl--Lvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----~~~~~-------- 66 (96)
T cd01228 3 LVKDSFLVELV-EGSRKLRHLFLFTDV--LLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----PFRIH-------- 66 (96)
T ss_pred ccccceeeeeh-hCCCcceEEEeeccE--EEEEEeeeccCccccccceeEEEEhHHheecch-----hhhcc--------
Confidence 45557889998 557899999998883 23311 111 12 355655522111 12211
Q ss_pred eEEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 90 SFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 90 ~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
+...+|.-+.|.+..|...|+..++-|-
T Consensus 67 ------~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 67 ------NKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred ------ccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 2236788889999999999999887653
No 116
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.22 E-value=43 Score=36.94 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPGVY 908 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~~~~~ 908 (1065)
+++--..|..|+..|...++.|+.+......++.+..+.+-++-....+|-++ +.+-...+..|.-.+..++||..+
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~---i~e~~~~~~~~~~~L~~~l~~ell 177 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE---IREEGQELSSKREELKEKLDPELL 177 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCHHHH
Confidence 33333344445555555555555555555555555555555544444444333 456667777788888999986543
No 117
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.71 E-value=38 Score=39.74 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hhhhHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES--------------SKAKAAKDVIKS 891 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~--------------~~~k~~~e~ik~ 891 (1065)
++.+...-..|-+|+..||+-+..|+..|+.++.+.||+..+++.+..--.+|- ..++|+.|+|.-
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELiee 378 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEE 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455666677788899999999999999999999999999888766554433332 234688888888
Q ss_pred HHHHHHHHHhc
Q 001504 892 LTAQLKDMAER 902 (1065)
Q Consensus 892 l~~qlk~~~~k 902 (1065)
|-.||.-+-..
T Consensus 379 lrkelehlr~~ 389 (502)
T KOG0982|consen 379 LRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHH
Confidence 88876655443
No 118
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.63 E-value=38 Score=36.01 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
-|.+++..|+.+.+.|+.+...+..+++...|+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 119
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=65.49 E-value=20 Score=33.08 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK 881 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~ 881 (1065)
+|.+|.+||..|..|-++.+.+++..+..++. |.+|+.+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~a----Ak~EA~R 63 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYA----AKSEANR 63 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 88899999999999999999888877664444 6666665
No 120
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.19 E-value=43 Score=40.27 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhcC
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK-AKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~-~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
.|+..|.+|-+.|+++-+.+....+...++++.|..-++.|..+ ....++-+-.|..+|.+|..+|
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455677777666555443 3344444444555555555444
No 121
>PRK14155 heat shock protein GrpE; Provisional
Probab=65.18 E-value=26 Score=37.85 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
+.|.+|+.+|++|++.|+.+......+++.+.|+++.
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~k 52 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAER 52 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777766666666666666544
No 122
>PHA03098 kelch-like protein; Provisional
Probab=65.07 E-value=1.5e+02 Score=36.31 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=12.0
Q ss_pred CeEEEEEeCCcEEEeCCC
Q 001504 345 FHTCAVTMAGELYTWGDG 362 (1065)
Q Consensus 345 ~hs~aLT~dG~Vy~WG~n 362 (1065)
.|+++ .-+|+||++|..
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 45544 458999999965
No 123
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=64.79 E-value=22 Score=33.90 Aligned_cols=69 Identities=28% Similarity=0.345 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKK---AQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~---~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
|-++..+|+.+++.|+.+-.....+|....++ +++...-+.+=..+-++..+-++.+..+|.++...+|
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677888888888888888888888888774 2232222222222333444445555556666666665
No 124
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.06 E-value=28 Score=29.63 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001504 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK 881 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~ 881 (1065)
|.+|-+||..|..|-.++..++.-+.-.+ ..|.+|+++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v----~~ak~EAaR 42 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADV----QAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44455555555555555555555544433 346667665
No 125
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.67 E-value=23 Score=40.14 Aligned_cols=49 Identities=29% Similarity=0.323 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 874 (1065)
.+.|..+-.-+.||-.+|+.|++.|.++|...++|-|.+.+.+.||.+.
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~lay 177 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAY 177 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 4555555566788999999999999999999999999999999998765
No 126
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=63.23 E-value=23 Score=34.30 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=51.6
Q ss_pred cCCeEEEE-ecCCcCeeeeEEEeCCCCEEEEecCCCCcc----cccceeee--cccccCChhHhhhcCCCCCCceEEEEE
Q 001504 23 KGAQLLKY-GRKGKPKFYPFRLSNDETSLIWISSSGERS----LKLASVSK--IIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1065)
Q Consensus 23 ~Gt~l~K~-~~~~kpk~r~f~L~~d~~~l~W~~~~~~~~----~~l~~I~e--I~~G~~t~~f~r~~~~~~~~~~FSiiy 95 (1065)
+|-..+|- ++++| |.++|.|-..+. -+.++.+.+. ..+.+..+ |=.|.. ++. .-..+-+.||.|=.
T Consensus 3 ~g~LylK~~gkKsW-Kk~~f~LR~SGL--Yy~~Kgksk~srdL~cl~~f~~~nvY~~~~---~kK-k~kAPTd~~F~~K~ 75 (114)
T cd01259 3 EGPLYLKADGKKSW-KKYYFVLRSSGL--YYFPKEKTKNTRDLACLNLLHGHNVYTGLG---WRK-KYKSPTDYCFGFKA 75 (114)
T ss_pred cceEEEccCCCccc-eEEEEEEeCCee--EEccCCCcCCHHHHHHHHhcccCcEEEEec---hhh-ccCCCCCceEEEec
Confidence 46666775 77888 666788876654 3433333222 11222221 222332 111 11234477888854
Q ss_pred cC----CCceE-EEEeCCHHHHHHHHHHHHHHH
Q 001504 96 NN----GKRSL-DLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 96 ~~----~~rtL-DLva~~~~ea~~Wv~GL~~Li 123 (1065)
.. +.+.| -|.|.|++.++.|+++||.+-
T Consensus 76 ~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 76 VGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred cccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 22 12444 367788889999999998654
No 127
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.99 E-value=29 Score=44.25 Aligned_cols=74 Identities=27% Similarity=0.268 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 827 DSLKKTNELLNQEVLKLRAQVES-LRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
|.--+++.-|.+||.+||.|++. -..+...++..+|++.|-++|-.- --| +|.+++.++-+.+.+||..|..-+
T Consensus 360 dpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~-twE--Ekl~ktE~in~erq~~L~~~gis~ 434 (1714)
T KOG0241|consen 360 DPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITV-TWE--EKLRKTEEINQERQAQLESMGISL 434 (1714)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHh-HHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788899999999999887 445555666666666665544221 122 356677788888888988876544
No 128
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.89 E-value=0.49 Score=54.09 Aligned_cols=64 Identities=27% Similarity=0.573 Sum_probs=53.6
Q ss_pred ecccccccccccccccccccccccccccc--CCceeecCCCcccccccccCCCCCCceEeccchHhHhhh
Q 001504 628 KWVSSAEQLQCSACRQAFGFTRKRHNCYN--CGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNK 695 (1065)
Q Consensus 628 ~wvs~~d~s~C~~C~~~F~f~rkrh~C~~--CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~~ 695 (1065)
.|..+.+...|..|-..|.-.+-..+|.+ |+.+||..|+ |+..+.+.+. .|-.||.-|+..+..
T Consensus 461 e~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~--Katvp~l~~e--~~akv~rlq~eL~~s 526 (542)
T KOG0993|consen 461 EWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCL--KATVPSLPNE--RPAKVCRLQHELLNS 526 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHH--Hhhccccccc--chHHHHHHHHHHhhh
Confidence 68888999999999999998888899998 9999999997 4555655555 788899999987664
No 129
>PHA03098 kelch-like protein; Provisional
Probab=62.47 E-value=3.3e+02 Score=33.35 Aligned_cols=17 Identities=6% Similarity=0.136 Sum_probs=11.5
Q ss_pred CeEEEEecCCcEEEEeCC
Q 001504 400 WHTALITSTGQLFTFGDG 417 (1065)
Q Consensus 400 ~hs~aLt~dG~Vy~wG~N 417 (1065)
.|++++ -+|+||.+|-.
T Consensus 335 ~~~~~~-~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGI 351 (534)
T ss_pred cceEEE-ECCEEEEEeCC
Confidence 355444 47999999943
No 130
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=62.40 E-value=54 Score=38.20 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=42.5
Q ss_pred CCCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 001504 815 TTSGLSFSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQE---LELQKSTKKAQEAMAV 874 (1065)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~---~~~~~~~k~~~~~~~~ 874 (1065)
.++||--.|..+.+||..-+-.||-|+.||.+-..|.+-.|... .||+.+=-|+|+--..
T Consensus 116 vnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrk 178 (558)
T PF15358_consen 116 VNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRK 178 (558)
T ss_pred hcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 35688888999999999888999999999998766665544433 3455555555554433
No 131
>PRK14163 heat shock protein GrpE; Provisional
Probab=61.78 E-value=62 Score=35.13 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1065)
Q Consensus 833 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 874 (1065)
.+-|.+++..|+++++.|+.+......|++.+.|+++.-...
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~ 83 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVT 83 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777788888888877777777777777765543333
No 132
>PRK11637 AmiB activator; Provisional
Probab=61.77 E-value=47 Score=39.79 Aligned_cols=9 Identities=22% Similarity=0.730 Sum_probs=4.7
Q ss_pred CCeeEEEEE
Q 001504 1042 EPGVYITLV 1050 (1065)
Q Consensus 1042 ~~gv~~t~~ 1050 (1065)
.|++|.-|+
T Consensus 406 ~~~l~fei~ 414 (428)
T PRK11637 406 RPSLYFEIR 414 (428)
T ss_pred CCeEEEEEE
Confidence 355555554
No 133
>PRK14160 heat shock protein GrpE; Provisional
Probab=61.52 E-value=53 Score=35.56 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAA 876 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~ 876 (1065)
...+++.++-|.+++.+|++++..|+.+.....++++.+.|+++.-...+.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~ 106 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIY 106 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888888888888888888888887665444443
No 134
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=61.49 E-value=80 Score=30.65 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=55.1
Q ss_pred EEEEec-CCcCeeeeEEEeCCCCEEEEecC-CC------Cccccc--ceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001504 27 LLKYGR-KGKPKFYPFRLSNDETSLIWISS-SG------ERSLKL--ASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1065)
Q Consensus 27 l~K~~~-~~kpk~r~f~L~~d~~~l~W~~~-~~------~~~~~l--~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~ 96 (1065)
|.+++. +||.+.|+|.|= |...|..++. .+ ...+.+ ..|..+..|..-. ....-...|-|+..
T Consensus 8 l~~~s~~~g~~q~R~~FLF-D~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~------~~~~~knafkl~~~ 80 (109)
T cd01224 8 ATRQKQNKGWNSSRVLFLF-DHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFS------SGHTIKNSLKIYSE 80 (109)
T ss_pred EEEEecccCCcccEEEEEe-cceEEEEecccccCCcEEEEEEEEcccEEEEECCCCcccc------CCceeEEEEEEEEc
Confidence 445544 588899988884 4444555432 11 122333 3455555553321 01122467888888
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHH
Q 001504 97 NGKRSLDLICKDKVEAEVWIAGLK 120 (1065)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~ 120 (1065)
.+.+.+.+.|+++||-+.|+..|.
T Consensus 81 ~~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 81 STDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred CCCeEEEEEECCHHHHHHHHHHHH
Confidence 888999999999999999998873
No 135
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.38 E-value=33 Score=41.97 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=41.1
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 821 FSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1065)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 874 (1065)
..+.++|+..+--.-|..|+.+|+.|++.|+.+.+..+.++.--.+++.+....
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~ 149 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSR 149 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 445566666666667889999999999999999998877777777766654443
No 136
>PF15406 PH_6: Pleckstrin homology domain
Probab=61.37 E-value=19 Score=34.59 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=46.0
Q ss_pred EEEeCCCCEEEEecCC-----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCCHHHHHHH
Q 001504 41 FRLSNDETSLIWISSS-----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVW 115 (1065)
Q Consensus 41 f~L~~d~~~l~W~~~~-----~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~ea~~W 115 (1065)
=+-+..++-|..+... +..-|.|.|+.+|.+.-..+ |++-.++ +..-+.|.+.+|++.|
T Consensus 42 AwAsqTGKGLLF~~K~~dka~P~GiinLadase~~~~g~~k--------------F~f~~~G--~khtF~A~s~aERD~W 105 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKAEDKASPSGIINLADASEPEKDGSNK--------------FHFKIKG--HKHTFEAASAAERDNW 105 (112)
T ss_pred hhhhccCceEEEEeccccccCCcceEehhhccccccCCCce--------------EEEEeCC--ceeeeecCCHHHhccH
Confidence 3445666666665532 34568999998887754432 6666654 5677899999999999
Q ss_pred HHHHHH
Q 001504 116 IAGLKA 121 (1065)
Q Consensus 116 v~GL~~ 121 (1065)
|..|++
T Consensus 106 v~~lk~ 111 (112)
T PF15406_consen 106 VAQLKA 111 (112)
T ss_pred HHHhhc
Confidence 998863
No 137
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=61.36 E-value=2.7e+02 Score=31.05 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=33.6
Q ss_pred cCCCeEEEecCCCCCCCCCCCCCCcccceEecccCCCCEEEEEec--CCEEEEEecCCcEEEEeCCC
Q 001504 469 VSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACG--HSLTVGLTTSGHVFTMGSTV 533 (1065)
Q Consensus 469 t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htvaLT~dG~Vy~wGsN~ 533 (1065)
+.+|.++.|--..+ .-...+.|.. +..|.++... ....+|.++.|+.|+|-.-.
T Consensus 143 dqsg~irvWDl~~~------~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 143 DQSGNIRVWDLGEN------SCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred cCCCcEEEEEccCC------ccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 67999999964332 1222233321 2345555544 55677889999999997543
No 138
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.95 E-value=29 Score=37.74 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=24.7
Q ss_pred CCCEEEEEeCCCeEEEEEeCCcEEEeCCC
Q 001504 334 MTSVDFVTCGEFHTCAVTMAGELYTWGDG 362 (1065)
Q Consensus 334 ~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n 362 (1065)
+..+..+.|-..+.++||.+|.+|+|--.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 35778899999999999999999999443
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.84 E-value=75 Score=40.73 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=55.4
Q ss_pred hhhhhHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQE-VLKL-------RAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQL 896 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~-~~~~-------~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~ql 896 (1065)
...-|.++-++|.+| +.++ +..|+.|+.+.++|-.+|++++.+.+..-..|..=++|.+.|+|-=+.|..++
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666 3322 22466788888888888888888877776677666668888888888888877
Q ss_pred HHHHhcC
Q 001504 897 KDMAERL 903 (1065)
Q Consensus 897 k~~~~k~ 903 (1065)
+.|...+
T Consensus 617 ~~vl~~l 623 (717)
T PF10168_consen 617 DRVLQLL 623 (717)
T ss_pred HHHHHHH
Confidence 7776655
No 140
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.68 E-value=67 Score=35.86 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 842 KLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 842 ~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
.||+.++.-..+.+.+|.||.+++.||
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL 98 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQL 98 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444444444444444555555555543
No 141
>PRK14154 heat shock protein GrpE; Provisional
Probab=60.60 E-value=44 Score=36.05 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVA 875 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a 875 (1065)
.|.+|+..|++|++.|+.+.....++++.+.|.++.-...+
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777777777777777776655443333
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=60.53 E-value=65 Score=37.10 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~ 869 (1065)
.+.+--+-|.+|...|.++++.|+++++.++.||..++++++
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334446666677777777777777777777666666443
No 143
>PRK14139 heat shock protein GrpE; Provisional
Probab=60.44 E-value=47 Score=35.22 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
+-|.+++..|++|++.|+.++-....+++.+.|+++.-...+..
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~ 78 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHK 78 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999988899999888887664444443
No 144
>PRK14148 heat shock protein GrpE; Provisional
Probab=60.43 E-value=54 Score=35.10 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 830 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
.+..+-|.+++..|+++++.|+.+.....++++.+.|+++.-...+..-+ ..+.+++++-.+.
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a-~~~~~~~LLpV~D 101 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFG-IEKFAKELLPVID 101 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHh
Confidence 34466788999999999999999999999999999998766555444422 2234444444433
No 145
>PRK14143 heat shock protein GrpE; Provisional
Probab=60.09 E-value=63 Score=35.67 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
.....+-|.+|+..|+++++.|+.+.....++++.+.|+.+.-...+.. .+..+.+++++-.+.
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~-~a~~~~~~~lLpV~D 128 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL-QLKCNTLSEILPVVD 128 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 3344456778888888888888888888888888888876554444433 233344554444443
No 146
>PRK14162 heat shock protein GrpE; Provisional
Probab=59.90 E-value=50 Score=35.32 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
-.+-|.+++..|++|++.|+.+.....++++.+.|+.+.-...+...+. .+.+++++-.+.
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~-~~~~~~LLpV~D 100 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYES-QSLAKDVLPAMD 100 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 3345778889999999999999999999999999887665555444322 234444444443
No 147
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.36 E-value=68 Score=39.42 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
...|++.+.-|..+|.+|+++++..+++|+.+..+.+....
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777666666666655554443
No 148
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.07 E-value=2.2e+02 Score=38.30 Aligned_cols=205 Identities=17% Similarity=0.169 Sum_probs=98.1
Q ss_pred EEEEEeCCcEEEeCCCCCCCCcCCCCCCcceee-eeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCC-CccCC
Q 001504 347 TCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWI-PKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTF-GVLGH 424 (1065)
Q Consensus 347 s~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~-P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~-GQLG~ 424 (1065)
-+-+|.|.+||.|-.+ +.+++-.-+...+.+ -+.+..|-.|.-+-.| .|.++|..-=+|+.+|--.. +..+.
T Consensus 92 RaWiTiDn~L~lWny~--~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYE--SDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred ceEEEeCCeEEEEEcC--CCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcc
Confidence 3678999999999776 334433322222211 1111111122222222 38899988888988883211 11111
Q ss_pred CCCCCcccceeecccccceEEEEecCCceEEEEEEeeeeccccccCCCeEEEecCCCC-----CCCCCCC----------
Q 001504 425 GDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDK-----NRLGHGD---------- 489 (1065)
Q Consensus 425 g~~~~~~~P~~V~~l~~~~I~~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~-----GQLG~g~---------- 489 (1065)
...... ......+..|..|.+ +.+|++|.-|.+.. .|.+.+-
T Consensus 166 ~~f~~~----~~i~~dg~~V~~I~~-------------------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 166 SIFNTS----FKISVDGVSVNCITY-------------------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred cccccc----eeeecCCceEEEEEe-------------------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccC
Confidence 111000 011122333333332 44666666654431 1111110
Q ss_pred ---CCCcccceEeccc--CCCCEEEEEecCCEEE--EEecCCcEEEEeCCCCCCCCCCCC------------CCCcceee
Q 001504 490 ---KEPRLKPTCVPAL--IDYNFHKVACGHSLTV--GLTTSGHVFTMGSTVYGQLGNPNA------------DGKLPCLV 550 (1065)
Q Consensus 490 ---~~~~~~P~~V~~l--~~~~I~~Ia~G~~htv--aLT~dG~Vy~wGsN~~GQLG~~~~------------~~~~P~~v 550 (1065)
.-..+.|..+..+ ....|.+|+.+....+ ++++.|.|=+|-....|+-+.-.. ..+.|.
T Consensus 223 t~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~-- 300 (1311)
T KOG1900|consen 223 TKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPL-- 300 (1311)
T ss_pred chhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccC--
Confidence 0113456532222 2468999999987755 567788777775555454432100 000110
Q ss_pred ecccCCCCeeEEEE------cCCcceeeecCC-eEEEEeC
Q 001504 551 EDKLAGESVEEIAC------GAYHVAVLTSRN-EVYTWGK 583 (1065)
Q Consensus 551 ~~~l~~~~V~~Ia~------G~~Hs~aLT~dG-~VytWG~ 583 (1065)
....-..|++|.. -+-|.+++|..| ++|.=|.
T Consensus 301 -~~s~f~~IvsI~~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 301 -DDSVFFSIVSISPLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred -CCcccceeEEecccCcccccceeEEEEecCCeEEEEecc
Confidence 0011233555543 456889999998 5776554
No 149
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=58.72 E-value=91 Score=31.34 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=35.2
Q ss_pred CCCceEEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 001504 86 KDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1065)
Q Consensus 86 ~~~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1065)
.+.+.|.|-+.++.....|-|++.+.-+.|+.-|+.|+.
T Consensus 78 gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~ 116 (133)
T cd01227 78 GDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLT 116 (133)
T ss_pred CCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 347899999988888999999999999999999999983
No 150
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=58.42 E-value=74 Score=32.98 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
..|..++.+|.++|.+|++.|.--|.||..+++-
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~ 115 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSA 115 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677899999999999999999999998877664
No 151
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=58.41 E-value=75 Score=35.57 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHHH------HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQ------EVLKLRAQVESLRQR------CEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 826 ~~~~~~~~~~~~~------~~~~~~~q~~~~~~~------~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
.+.++++-..|.. +|.=||..++.+.+. .+..+.+.+...++++..-.-...+-.+.+.+.+-+|-+.
T Consensus 148 ~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~ 227 (269)
T PF05278_consen 148 ESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIK 227 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555433 566677655544443 6667778888888877765555555666677777788888
Q ss_pred HHHHHHHhcCC
Q 001504 894 AQLKDMAERLP 904 (1065)
Q Consensus 894 ~qlk~~~~k~~ 904 (1065)
.++.+|..+|.
T Consensus 228 ~~i~e~~~rl~ 238 (269)
T PF05278_consen 228 ERITEMKGRLG 238 (269)
T ss_pred HHHHHHHHHHH
Confidence 88888888874
No 152
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=58.17 E-value=2.5e+02 Score=35.22 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=31.8
Q ss_pred EEecCCcEEEEeCCCCCCCCCCCCCCCcceeeec-ccCCCCee---EEEEcCCcceeeecCCeEEEEeC
Q 001504 519 GLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVED-KLAGESVE---EIACGAYHVAVLTSRNEVYTWGK 583 (1065)
Q Consensus 519 aLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~-~l~~~~V~---~Ia~G~~Hs~aLT~dG~VytWG~ 583 (1065)
+..-+|.||+.|.... +... .. ++. .+....+. .+.....+..+..-+|++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~----~~----VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL----SS----VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc----ce----EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4556889999996542 1111 00 111 11122233 34456677777788899999985
No 153
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=58.08 E-value=54 Score=35.06 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001504 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1065)
Q Consensus 833 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~ 894 (1065)
.+.+.++|..|++|++.|+.+.....++++.+.|+++.-...|.. .+.-+.+++++-.|.+
T Consensus 38 ~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k-~a~e~~~~dlLpviDn 98 (193)
T COG0576 38 LEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKK-YAIEKFAKDLLPVIDN 98 (193)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344558899999999999999988889988888887664444432 2222444444444443
No 154
>PRK14156 heat shock protein GrpE; Provisional
Probab=58.00 E-value=44 Score=35.21 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
+.+|+..|++|++.|+.+.....++++.++|+++.-...+..-+ .-+.+++++-.+.
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a-~~~~~~~LLpVlD 88 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYR-SQDLAKAILPSLD 88 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHh
Confidence 56678889999999999999999999999888766555444422 2234444444443
No 155
>PRK14153 heat shock protein GrpE; Provisional
Probab=57.09 E-value=40 Score=36.06 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=45.7
Q ss_pred hhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 826 TDSLKKTN--ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 826 ~~~~~~~~--~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
.++||.-+ +.+.+|+..|++|++.|+.+.....++++.+.|+++.-...+..-+. -+.+++++-.+.
T Consensus 26 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~D 94 (194)
T PRK14153 26 AEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVL-EQVLLDLLEVTD 94 (194)
T ss_pred HHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 45565444 46788999999999999999999999999999987665444433222 234444444433
No 156
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=56.74 E-value=37 Score=30.77 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCE 855 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 855 (1065)
++||..|..|.+|+..++++-+.|.++-+
T Consensus 28 eELKekn~~L~~e~~~~~~~r~~L~~en~ 56 (79)
T PRK15422 28 EELKEKNNSLSQEVQNAQHQREELERENN 56 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444444444444444333333333
No 157
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=56.69 E-value=52 Score=39.42 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
..+|..|-.|-+.|..+.+.+..|..+..|++.+
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555555544
No 158
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=56.56 E-value=9.8 Score=49.13 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=75.0
Q ss_pred CCeEEEecCCCCCCCCCCCCC----CcccceEec-------ccCCCCEEEEEecCCEEEEEecCCcEEEEeCCCCCCCCC
Q 001504 471 SGKLFTWGDGDKNRLGHGDKE----PRLKPTCVP-------ALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGN 539 (1065)
Q Consensus 471 ~G~Ly~WG~n~~GQLG~g~~~----~~~~P~~V~-------~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wGsN~~GQLG~ 539 (1065)
+|.-|-|-.+.-|--|-.... ....|+.+- .-...+|+.|.+-.+..+||..+|++|.|-....--|-+
T Consensus 329 ~Gah~d~~RGapgd~~~ehldkknaktdaPVk~gedlqwwpDddan~~I~I~A~s~el~AlhrkGelYqWaWdESEgldd 408 (3015)
T KOG0943|consen 329 DGAHFDNERGAPGDEGEEHLDKKNAKTDAPVKLGEDLQWWPDDDANKFICIGALSSELLALHRKGELYQWAWDESEGLDD 408 (3015)
T ss_pred cccccccccCCCCCCCCcccccccCccCCCcccccccccCcCCCCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCC
Confidence 566666655544433332211 223344431 112356888888888899999999999999887666655
Q ss_pred CCC---CCCcceeeecccCCCCeeEEEEcCCcceeeecCCeEEEE
Q 001504 540 PNA---DGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTW 581 (1065)
Q Consensus 540 ~~~---~~~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLT~dG~VytW 581 (1065)
+.. +...|.....-+.+++|+.+++..-..-++|++|+|-+|
T Consensus 409 plai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 409 PLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred hhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 422 222344444446789999999999999999999999999
No 159
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.45 E-value=29 Score=33.31 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
.-|.+|+..+++|++.|+++-+.++.||++++.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 356677777777777777777777777776654
No 160
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=56.35 E-value=1.3e+02 Score=38.66 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCCeEEEEEeCCc-EEEeCCCCCCCCcCCCCCCcce-eeeeeecCCCCCCcEEEEEecCCeEEEEecCC--cEEEEeCCC
Q 001504 343 GEFHTCAVTMAGE-LYTWGDGTHNAGLLGHGTDVSH-WIPKRISGPLEGLQVASVTCGPWHTALITSTG--QLFTFGDGT 418 (1065)
Q Consensus 343 G~~hs~aLT~dG~-Vy~WG~n~~~~GqLG~g~~~~~-~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG--~Vy~wG~N~ 418 (1065)
++...++++.+|+ |+++|.+ |-+-.-...+. ..|.-|.. .+..|..|+|-..|.+.-++++ .+|.++...
T Consensus 14 ~G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred CceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCCCCC
Q ss_pred CCccCCCCCCCcccceeecccccceEEEEecCCceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCCCcccceE
Q 001504 419 FGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTC 498 (1065)
Q Consensus 419 ~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~ 498 (1065)
.+-+ +.....-..++++.. +|+..+.|..+++.-=.........-+.
T Consensus 88 ~~~i---------------------L~Rftlp~r~~~v~g------------~g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 88 EDTI---------------------LARFTLPIRDLAVSG------------SGKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred ccce---------------------eeeeeccceEEEEec------------CCcEEEeecCceeEEEEeccccchheee
Q ss_pred ecccCCCCEEEEEecCCEEEEEecCCcEEEE
Q 001504 499 VPALIDYNFHKVACGHSLTVGLTTSGHVFTM 529 (1065)
Q Consensus 499 V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~w 529 (1065)
...-....-++...-..+-++.+-+|.|++|
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEecCceEEEE
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=55.88 E-value=3.3e+02 Score=30.30 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=33.0
Q ss_pred CCCEEEEEecCCeEEEEEcCCcEEEEeCCCCCc-cCCCCCcceeccEEeecc
Q 001504 282 VLDVHHIACGVRHAALVTRQGEVFTWGEESGGR-LGHGVGKDIVQPHLLESL 332 (1065)
Q Consensus 282 ~~~V~~Ia~G~~Hs~~LT~dG~Vy~WG~N~~Gq-LG~g~~~~~~~P~~V~~l 332 (1065)
...|-.++.-..|. +.--||.||.|-.|..-. ++...--.+..|..+..+
T Consensus 62 dgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~ 112 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAV 112 (325)
T ss_pred CCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCccccCcc
Confidence 44566777776665 445569999999888765 555544556666666443
No 162
>PHA02713 hypothetical protein; Provisional
Probab=55.84 E-value=2.5e+02 Score=34.93 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=13.7
Q ss_pred CCCeEEEEEeCCcEEEeCCC
Q 001504 343 GEFHTCAVTMAGELYTWGDG 362 (1065)
Q Consensus 343 G~~hs~aLT~dG~Vy~WG~n 362 (1065)
...+..+..-+|+||++|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33344455568999999965
No 163
>PRK09039 hypothetical protein; Validated
Probab=55.72 E-value=61 Score=37.78 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 874 (1065)
..+|..|++||+.|+.|....+.+|...+++.+++-..
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688888888888888777777777777765444333
No 164
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=55.72 E-value=50 Score=39.66 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=41.3
Q ss_pred cchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhh----hhhhHHHHHHHH
Q 001504 823 KSITDSLKKTNE-LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV------AAEES----SKAKAAKDVIKS 891 (1065)
Q Consensus 823 ~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~------a~~e~----~~~k~~~e~ik~ 891 (1065)
..+.+++++-+- ....+|..|..|.+.|..+.+.+..|..+.+|+++..... ..+|+ .+-+..++-++.
T Consensus 12 ~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 91 (425)
T PRK05431 12 EAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDE 91 (425)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554431 2245666666666666666666666666666665441111 11111 112233344444
Q ss_pred HHHHHHHHHhcCC
Q 001504 892 LTAQLKDMAERLP 904 (1065)
Q Consensus 892 l~~qlk~~~~k~~ 904 (1065)
+.+++.++..++|
T Consensus 92 ~~~~~~~~~~~iP 104 (425)
T PRK05431 92 LEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHhCC
Confidence 4556677778887
No 165
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=55.69 E-value=41 Score=32.12 Aligned_cols=27 Identities=30% Similarity=0.286 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQK 863 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~ 863 (1065)
.+||.-||.|++.|.++-.++|.|-..
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~l 92 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSL 92 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999998887777665443
No 166
>PRK14158 heat shock protein GrpE; Provisional
Probab=55.18 E-value=73 Score=34.08 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
..+-|.+++..|++|++.|+.+......+++.+.|+.+.-...+..
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~ 86 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLK 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999888889998888887665444443
No 167
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.09 E-value=68 Score=41.63 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=4.4
Q ss_pred CHHHHHHHHHH
Q 001504 108 DKVEAEVWIAG 118 (1065)
Q Consensus 108 ~~~ea~~Wv~G 118 (1065)
|.++.+.|..-
T Consensus 39 ~~~~i~~~l~~ 49 (782)
T PRK00409 39 DFEEVEELLEE 49 (782)
T ss_pred CHHHHHHHHHH
Confidence 33444444333
No 168
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=55.04 E-value=68 Score=31.38 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=49.6
Q ss_pred eEEEEecCCc-CeeeeEEEeCCCCEEEEec--CCCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC----
Q 001504 26 QLLKYGRKGK-PKFYPFRLSNDETSLIWIS--SSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG---- 98 (1065)
Q Consensus 26 ~l~K~~~~~k-pk~r~f~L~~d~~~l~W~~--~~~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~---- 98 (1065)
+|+-|..+-+ .|+++|+|+..+-++--.. .+--|.|+|++|..|..-+.. . ......+.||=|+..+-
T Consensus 5 WmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~---~--~~~~~~~hcFEi~T~~~vY~V 79 (117)
T cd01239 5 WMVHYTSSDNRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGD---S--VLAKHPPHCFEIRTTTNVYFV 79 (117)
T ss_pred eEEEEecCccceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCC---c--CCCCCCCcEEEEEecCEEEEe
Confidence 5666655433 3556777665544443321 234688999999999853222 1 11234578888866331
Q ss_pred --C------------ceEEEEeCCHHHHHHHHHHHH
Q 001504 99 --K------------RSLDLICKDKVEAEVWIAGLK 120 (1065)
Q Consensus 99 --~------------rtLDLva~~~~ea~~Wv~GL~ 120 (1065)
. -+.+--.-..+-|+.|.+.++
T Consensus 80 G~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~ 115 (117)
T cd01239 80 GGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIR 115 (117)
T ss_pred cccccccCCCcccCCCCcccccchhHHHHHHHHHHh
Confidence 0 011111124567888998876
No 169
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=54.54 E-value=30 Score=30.21 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001504 846 QVESLRQRCEFQELELQKSTKKAQEA-------MAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1065)
Q Consensus 846 q~~~~~~~~~~~~~~~~~~~k~~~~~-------~~~a~~e~~~~k~~~e~ik~l~~qlk~~ 899 (1065)
++..|..+.+..+.+|+++.+++... -.+...|-.|.....+-+..|..+|+.|
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444455555555554221 1233445555556666677777777665
No 170
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=54.46 E-value=86 Score=33.72 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~ 899 (1065)
++++..+-...++..+..+...|++-.+..+.|+++++++++.-. .+-..-+.+|.-++.+..+|+++
T Consensus 38 emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~----kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 38 EMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE----KDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555666666666666666666554311 11112234555555555555543
No 171
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=54.32 E-value=5.3 Score=53.09 Aligned_cols=34 Identities=35% Similarity=1.001 Sum_probs=30.3
Q ss_pred cccccccccccccccccccccccccccCCceeecCC
Q 001504 630 VSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSC 665 (1065)
Q Consensus 630 vs~~d~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~C 665 (1065)
..+...-.|..|++.|.-.|++||| ||.++|.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 4556667899999999999999999 999999999
No 172
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=54.12 E-value=92 Score=28.97 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=29.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 822 SKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQE 858 (1065)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 858 (1065)
++.+.+.|..++.+|.+||.+-..-++.|.+..+...
T Consensus 3 s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~ 39 (92)
T PF03908_consen 3 SSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLR 39 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4667899999999999999998887777777655443
No 173
>PRK14141 heat shock protein GrpE; Provisional
Probab=54.05 E-value=56 Score=35.33 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
|.+++..|++|++.|+.+....-.+++.+.|++
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~ 68 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRT 68 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 174
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=53.89 E-value=3e+02 Score=32.25 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=13.2
Q ss_pred CeEEEEecCCcEEEEeCC
Q 001504 400 WHTALITSTGQLFTFGDG 417 (1065)
Q Consensus 400 ~hs~aLt~dG~Vy~wG~N 417 (1065)
.|+++...+|+||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 366665468999999953
No 175
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=53.89 E-value=72 Score=37.52 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001504 833 NELLNQEVLKLRAQVESLRQRCE 855 (1065)
Q Consensus 833 ~~~~~~~~~~~~~q~~~~~~~~~ 855 (1065)
|+.+.+|+++||.|++.-+.+.+
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555789999988775554444
No 176
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=53.78 E-value=1.5e+02 Score=26.32 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV---AAEESSKAKAAKDVIKSLTAQLKD 898 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~---a~~e~~~~k~~~e~ik~l~~qlk~ 898 (1065)
-|..||.-||.....|.+|.+..+.++..+.+.=..+..- |.+|..+- |+-+.+|..+|++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~L---k~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKL---KEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3678999999999999999999998888888754433333 34444442 3334444445544
No 177
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.75 E-value=85 Score=37.30 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLK-------LRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~-------~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
++.+..-+.+.+|+.. +++....+++++.++..++.+++|++++
T Consensus 350 en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 350 ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555 4456667778888888888888887644
No 178
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=53.64 E-value=48 Score=39.70 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE-AMAV---AAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~-~~~~---a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
.|.+|-.+|+.|++.|+.+-.....+|.+..++.++ +.++ +++=..+-++.++-++.|..++.++..++|
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lP 107 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345677788888888888888888888664433222 1221 112122344455555666667777888888
No 179
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.62 E-value=1.2e+02 Score=32.83 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 833 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
-.-|.+|+.+|++++.++.++..+...++|..-+
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~ 128 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVA 128 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3456677777777777776666655555555433
No 180
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=53.61 E-value=1.4e+02 Score=28.88 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=36.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1065)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~ 873 (1065)
....++.|...+.|..|-..|++.+.+|.++-..+...+..++.++.|+..
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777788888777778887777777777777777777777666543
No 181
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.45 E-value=1.2e+02 Score=34.89 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=49.3
Q ss_pred cccchhhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 001504 821 FSKSITDSLKKTNELL----------NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIK 890 (1065)
Q Consensus 821 ~~~~~~~~~~~~~~~~----------~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik 890 (1065)
..+.+.+.|+...+-. --|-..|.=||..|+.+++-++..+-.++|++++-..- +..-|+.+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~e-------lEr~K~~~d 150 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRE-------LERQKRAHD 150 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3345556666555433 23556666699999999999999988888877542211 335566777
Q ss_pred HHHHHHHHHHhcC
Q 001504 891 SLTAQLKDMAERL 903 (1065)
Q Consensus 891 ~l~~qlk~~~~k~ 903 (1065)
.|+.++.++-+.|
T Consensus 151 ~L~~e~~~Lre~L 163 (302)
T PF09738_consen 151 SLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655554
No 182
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=53.28 E-value=30 Score=30.86 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKST 865 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 865 (1065)
..+|.++-+.-.+|-..|++||..|.++-+.++..+++++
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666677888888888888888888888888765
No 183
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=53.09 E-value=1e+02 Score=28.63 Aligned_cols=43 Identities=26% Similarity=0.382 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 001504 835 LLNQEVLKLRAQVESLRQRC-EFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
-|.+|+.+|+..++.|.... +.-..++.....++++...-+.+
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~ 45 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARD 45 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888777776443 33344555555555555444444
No 184
>PRK14151 heat shock protein GrpE; Provisional
Probab=52.97 E-value=64 Score=33.97 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAA 876 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~ 876 (1065)
-|.+++..|++|++.|+.+......+++.+.|+.+.-...+.
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~ 65 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAH 65 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888877777888877777655443333
No 185
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.81 E-value=38 Score=33.54 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELEL 861 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 861 (1065)
.++|.+-|..|.|||.+|+.++..+..+.+....+.
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666655555544444333
No 186
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=52.60 E-value=32 Score=33.61 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
++-|-...+.|..++..|+++++.+.++++....++++...+
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555444443
No 187
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=52.43 E-value=71 Score=33.62 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQE 858 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~ 858 (1065)
.|.+|+.+++..+..+....+.++
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLK 115 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555554444444444333
No 188
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.42 E-value=78 Score=41.04 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKST 865 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 865 (1065)
+|+.+++++++.++++.+.+..++++-+
T Consensus 532 ~~~~~~~~e~~~~~~~l~~~~~~l~~~~ 559 (771)
T TIGR01069 532 EHLEKLLKEQEKLKKELEQEMEELKERE 559 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444444444433
No 189
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=52.18 E-value=1.1e+02 Score=30.82 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhcCCCC
Q 001504 841 LKLRAQVESLRQRCEFQELELQKSTKKAQ----EAMAVAAEESSK-AKAAKDVIKSLTAQLKDMAERLPPG 906 (1065)
Q Consensus 841 ~~~~~q~~~~~~~~~~~~~~~~~~~k~~~----~~~~~a~~e~~~-~k~~~e~ik~l~~qlk~~~~k~~~~ 906 (1065)
..|++|+..|..+|++++.+.++.-+.++ .....+..--.+ +..=.|.++-|..||+.+ ++||-|
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv-~~L~lg 92 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV-QKLELG 92 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHS-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCC
Confidence 45778999999999999999998888765 333333222222 112346778888888875 456644
No 190
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=52.08 E-value=44 Score=39.95 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRA---------QVESLRQRCEF-QELELQKSTKKAQEAMAVAAE--ESSKAKAAKDVIKSLTAQ 895 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~---------q~~~~~~~~~~-~~~~~~~~~k~~~~~~~~a~~--e~~~~k~~~e~ik~l~~q 895 (1065)
.+.+.++++.+|+..+.. -+..|+++.+. .+.|+++..+++.+-..-..+ |..-+..++.++.-.+.+
T Consensus 314 ~~~~a~~ii~~~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~k~lh~p~~~ 393 (417)
T TIGR01035 314 EAEKAEEIVEEETAEFKQWLRSLEVEPTIKALRSLAEIVREKELEKALKKLPGLSKDVEEVLEDLARKLINKLLHAPTVR 393 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888887765 25677777765 678888888876321111111 222244666666677778
Q ss_pred HHHHHhc
Q 001504 896 LKDMAER 902 (1065)
Q Consensus 896 lk~~~~k 902 (1065)
||+++..
T Consensus 394 lk~~~~~ 400 (417)
T TIGR01035 394 LKQLADK 400 (417)
T ss_pred HHHHhcC
Confidence 8887754
No 191
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=52.00 E-value=39 Score=35.72 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~ 869 (1065)
+..++.|+-|..|+.+|..+++.|..+.+..+.+.+.-.+.+.
T Consensus 91 Eq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~ 133 (182)
T PF15035_consen 91 EQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFN 133 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777777777777777777777777777777766665543
No 192
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=51.82 E-value=23 Score=36.48 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAA 876 (1065)
Q Consensus 830 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~ 876 (1065)
....+-|.+++..|++|++.|+.+...+..+++.+.++++.-..-+.
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~ 56 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAK 56 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666777777777777777777777777776655444333
No 193
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=51.45 E-value=70 Score=42.38 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 860 ELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 860 ~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
+.-.++++++++...+.+|.++.+.++.-++.|-.+|+++..+.-
T Consensus 488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333466778999999999999988888889999999988866553
No 194
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=51.03 E-value=1.3e+02 Score=28.43 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQE---VLKLRAQV-ESLRQRCEFQE---LELQKSTKKAQEAMAVAAEESSK-AKAAKDVIKSLTAQLKD 898 (1065)
Q Consensus 827 ~~~~~~~~~~~~~---~~~~~~q~-~~~~~~~~~~~---~~~~~~~k~~~~~~~~a~~e~~~-~k~~~e~ik~l~~qlk~ 898 (1065)
++|...--.|+.. .+++|++| +-|.++++.-. +.+.++..-+-+..+-...|+.+ -+...--+|.|..|||.
T Consensus 12 ~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKn 91 (107)
T PRK15365 12 RDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQ 91 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455554 44455677 67777665322 22333333333334444555555 22222457889999999
Q ss_pred HHhcCCCCCC
Q 001504 899 MAERLPPGVY 908 (1065)
Q Consensus 899 ~~~k~~~~~~ 908 (1065)
|-...|.+++
T Consensus 92 lnt~~~~~~~ 101 (107)
T PRK15365 92 LNAQAPVEIP 101 (107)
T ss_pred cCCCCceeCC
Confidence 9888887764
No 195
>PLN02320 seryl-tRNA synthetase
Probab=50.84 E-value=62 Score=39.54 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=42.8
Q ss_pred cchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHH-------
Q 001504 823 KSITDSLKKTNE-LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESS----KAKAAKDVIK------- 890 (1065)
Q Consensus 823 ~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~----~~k~~~e~ik------- 890 (1065)
..+.+.+++.+- +-.+||..|-.+.+.|..+.+.+..|..+..|++++. ...++.. +.|..|+-|+
T Consensus 77 ~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~--~~~~~~~~l~~~~k~lk~~i~~le~~~~ 154 (502)
T PLN02320 77 EAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGK--LEPSERQALVEEGKNLKEGLVTLEEDLV 154 (502)
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555541 1145666666666777777777777766666666541 1111111 1223334444
Q ss_pred HHHHHHHHHHhcCC
Q 001504 891 SLTAQLKDMAERLP 904 (1065)
Q Consensus 891 ~l~~qlk~~~~k~~ 904 (1065)
.+.++|.++..++|
T Consensus 155 ~~~~~l~~~~l~iP 168 (502)
T PLN02320 155 KLTDELQLEAQSIP 168 (502)
T ss_pred HHHHHHHHHHHhCC
Confidence 44456677788887
No 196
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.74 E-value=3e+02 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=16.7
Q ss_pred CCCCcCCCCCCCCCCCCCCCCcc-cccchhh
Q 001504 798 SPFSRRPSPPRSATPVPTTSGLS-FSKSITD 827 (1065)
Q Consensus 798 s~~~~~~sp~~s~~~~~~~~~~~-~~~~~~~ 827 (1065)
+|.+....|..++.|+|+.+.+. .++.+.|
T Consensus 99 ~p~sa~a~plps~~p~~s~~ip~vDp~VL~D 129 (222)
T KOG4514|consen 99 APSSAHATPLPSMGPIQSRNIPEVDPSVLSD 129 (222)
T ss_pred CCCccccCCCCCCCCCCCCCCCCCChHHHHH
Confidence 34444455666777887776543 3444333
No 197
>PRK02119 hypothetical protein; Provisional
Probab=50.38 E-value=1.3e+02 Score=27.03 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
+|+..|.+.+..|+.|.-.||.-|+.+.+-+-+
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~ 34 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIE 34 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888888888888775433
No 198
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=50.14 E-value=5.3 Score=45.12 Aligned_cols=65 Identities=23% Similarity=0.434 Sum_probs=47.3
Q ss_pred eccccccccccccccccccccccccccccCCceeecCCCccc----ccccccCCCCCCceEeccchHhH
Q 001504 628 KWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRK----ALRAALAPNPGKPYRVCDCCFAK 692 (1065)
Q Consensus 628 ~wvs~~d~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k----~~~~~l~p~~~kp~RVC~~C~~~ 692 (1065)
.|+.+.+...|..|...|.|+++.|+|+.||.++|.-|..-+ .+.+..-...+.+.+.|..|+..
T Consensus 13 ~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 13 DWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 588888999999999999999999999999999999997511 12222222333455556555554
No 199
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.12 E-value=77 Score=27.03 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~ 871 (1065)
-|+.+|+.|.++|..|.+.-.....+++..+..+..|
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888887777777777655544443
No 200
>PRK14147 heat shock protein GrpE; Provisional
Probab=50.02 E-value=75 Score=33.34 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 874 (1065)
|.+|+..|++|++.|+.+.....++++.+.|+++.-...
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~ 61 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQ 61 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777778888888777777777777777766553333
No 201
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=49.96 E-value=1.1e+02 Score=33.22 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=56.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhhhhhhHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKK---------------AQEAMAVAAEESSKAKAAKDVI 889 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~---------------~~~~~~~a~~e~~~~k~~~e~i 889 (1065)
-.++|++-|+++..++..++.+-+..+++-+..-..|+.+++. +++...-...|.-|-++-+| |
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~e-i 122 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNE-I 122 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-H
Confidence 4588999999999999999988888888777777777775554 34444444444444445555 8
Q ss_pred HHHHHHHHHHHhcCC
Q 001504 890 KSLTAQLKDMAERLP 904 (1065)
Q Consensus 890 k~l~~qlk~~~~k~~ 904 (1065)
+-+.+.++.|..++-
T Consensus 123 ~k~r~e~~~ml~evK 137 (230)
T PF03904_consen 123 KKVREENKSMLQEVK 137 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877654
No 202
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=49.78 E-value=11 Score=47.92 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=56.1
Q ss_pred CcCeeeeEEEeCCCCEEEEecCC----CCcccccceeeeccc-ccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCC
Q 001504 34 GKPKFYPFRLSNDETSLIWISSS----GERSLKLASVSKIIP-GQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKD 108 (1065)
Q Consensus 34 ~kpk~r~f~L~~d~~~l~W~~~~----~~~~~~l~~I~eI~~-G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~ 108 (1065)
+| |.|+|.|++|.-+|.++... .+..|+|.+|..+-. |-++ .++.-|-=+. ...|+-+|.|.+
T Consensus 1649 ~W-k~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~----------vdekgffdlk-tt~rvynf~a~n 1716 (1732)
T KOG1090|consen 1649 LW-KPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKT----------VDEKGFFDLK-TTNRVYNFCAQN 1716 (1732)
T ss_pred cc-ccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccc----------cCccceeeee-hhhHHHHHHhcc
Confidence 44 77899999999999996654 466799999988776 2222 2222232221 234778899999
Q ss_pred HHHHHHHHHHHHHHH
Q 001504 109 KVEAEVWIAGLKALI 123 (1065)
Q Consensus 109 ~~ea~~Wv~GL~~Li 123 (1065)
.-+|+.|+..|+..+
T Consensus 1717 in~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1717 INLAQQWVECIQSCL 1731 (1732)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999999998754
No 203
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=49.55 E-value=13 Score=42.49 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=44.2
Q ss_pred ecCCCccceEeeeeccccccccccccccccccccccccccccCCceeecCCCcccccccccCCC-CCCceEeccchHhHh
Q 001504 615 ACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPN-PGKPYRVCDCCFAKL 693 (1065)
Q Consensus 615 acG~~hT~al~~~~wvs~~d~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~-~~kp~RVC~~C~~~l 693 (1065)
.||+...+.+....-..|.-.-.|.-|+..|.|. |..|-+||. ..+.....+... ..-..-+|+.|..-+
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV--RVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCccccc--CccCCCCCC-------CCceeeeeecCCCcceEeeecccccccc
Confidence 5777766554321112455667899999776664 677888885 122211112221 123447899999988
Q ss_pred hhhcc
Q 001504 694 NKVSE 698 (1065)
Q Consensus 694 ~~~~~ 698 (1065)
+.+..
T Consensus 263 K~~~~ 267 (309)
T PRK03564 263 KILYQ 267 (309)
T ss_pred eeccc
Confidence 87633
No 204
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.30 E-value=1e+02 Score=32.49 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 001504 842 KLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMA 900 (1065)
Q Consensus 842 ~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~ 900 (1065)
+|+.++..+.++....+.++...++.....-..-....++-++.++.++.+..++.++-
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333332222333333344444444444444433
No 205
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.17 E-value=1.7e+02 Score=28.30 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=49.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001504 822 SKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK 881 (1065)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~ 881 (1065)
-+...+.|.+-++-|.--+..|++|-.++.+++.-++.+|-...+.++. ..+|..+-..
T Consensus 28 ~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~~ 86 (107)
T PF09304_consen 28 EKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELES 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3556788888888899999999999999999999999999999998877 7777744443
No 206
>PHA02047 phage lambda Rz1-like protein
Probab=49.06 E-value=92 Score=29.32 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 846 QVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 846 q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
..++|+.|.|..+..+..++++++.
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~ 59 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQA 59 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555444
No 207
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.96 E-value=99 Score=38.22 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQE 858 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 858 (1065)
++.|+.-|..|.-|+.+|+..++.|+.+|+...
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554433
No 208
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.95 E-value=63 Score=35.99 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=57.4
Q ss_pred hcCCeEEEEecC---CcCeeeeEEEeCCCCEEEEecCCC--Ccccccc--eeeecccccCChhHhhhcCCCC---CCceE
Q 001504 22 KKGAQLLKYGRK---GKPKFYPFRLSNDETSLIWISSSG--ERSLKLA--SVSKIIPGQRTAVFQRYLRPEK---DYLSF 91 (1065)
Q Consensus 22 ~~Gt~l~K~~~~---~kpk~r~f~L~~d~~~l~W~~~~~--~~~~~l~--~I~eI~~G~~t~~f~r~~~~~~---~~~~F 91 (1065)
.+-.+|+|.+.. .| |+|.|.|..++..-.=+.+.+ ..-|.|. +|++|..-++---|+-|.-..+ -.-|=
T Consensus 261 dREGWLlKlgg~rvktW-KrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACK 339 (395)
T KOG0930|consen 261 DREGWLLKLGGNRVKTW-KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACK 339 (395)
T ss_pred cccceeeeecCCcccch-hheeEEeecceeeeeeeccCCCCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeec
Confidence 344688999652 33 778899988876544344444 3446665 4555544443333333321110 00010
Q ss_pred E-----EEEcCCCceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001504 92 S-----LIYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1065)
Q Consensus 92 S-----iiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1065)
+ +|-+ +-....+-|.+.||.+.|+..+++.|+.
T Consensus 340 Te~DGRvVEG-~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 340 TEADGRVVEG-NHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred ccCCceeEec-cceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 0 1111 1123457899999999999999999963
No 209
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.91 E-value=1.3e+02 Score=33.31 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
.+|-..|.++++.|+.+-+.++...+++++.
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~ 78 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQ 78 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 210
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=48.83 E-value=38 Score=27.55 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 841 LKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 841 ~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
.-||.||+.|+.|.+.++.-+-+++|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776666666666665
No 211
>PRK14140 heat shock protein GrpE; Provisional
Probab=48.56 E-value=1.1e+02 Score=32.56 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
.++ |.+++..|++++..|+.+....-++++.+.|+.+.-...+.. .+..+.+++++-.|.
T Consensus 39 ~~~-l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~-~a~~~~~~~LLpvlD 98 (191)
T PRK14140 39 LDE-EQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEK-YRAQSLASDLLPALD 98 (191)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344 677888899999999999988889999988887665544433 222234444444333
No 212
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=48.23 E-value=88 Score=39.55 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 831 KTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 831 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
.--.+|.+..+.++.|++.|..+|..+|.|+|+++..+
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti 129 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTI 129 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666788889999999999999999988876543
No 213
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=47.47 E-value=80 Score=33.60 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHhc
Q 001504 847 VESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA---QLKDMAER 902 (1065)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~---qlk~~~~k 902 (1065)
.+.|..+.++.+.++.....+++||-.+|.+--.|+ .|+++.|+- +|-.--++
T Consensus 48 ~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~---eEVarkL~iiE~dLE~~eer 103 (205)
T KOG1003|consen 48 MKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY---EEVARKLVIIEGELERAEER 103 (205)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHH
Confidence 345556666667777777777777777766544443 456666654 44443333
No 214
>PRK14146 heat shock protein GrpE; Provisional
Probab=47.17 E-value=85 Score=34.17 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
..|.+|+..|+++++.|+.+.....++++.+.|+.+.-...+..
T Consensus 57 ~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~ 100 (215)
T PRK14146 57 TSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRK 100 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888888888887776655444444
No 215
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=47.15 E-value=6.3 Score=42.98 Aligned_cols=59 Identities=29% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
.+..|..|...||.||..|+.+++.+..|.+++.+ ++.+-. |--| +|-.++|-+|..|-
T Consensus 52 ~~~~~~~E~l~LQrQi~qLt~~lQ~~~~eneklk~-~~K~~k-alle-Skl~~~kk~IdrlK 110 (249)
T PF10422_consen 52 QSSKLVDETLLLQRQITQLTSQLQSQKQENEKLKE-LQKTQK-ALLE-SKLSNKKKEIDRLK 110 (249)
T ss_dssp --------------------------------------------------------------
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHH-HHHH-HHHHHHHHHHHHHH
Confidence 34577888889999999999999888888777633 333221 2222 34445555555554
No 216
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.94 E-value=1.3e+02 Score=33.58 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQ 862 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 862 (1065)
.+.++...+.+.+++.++|.+++.++++.+.+...+.
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666665555
No 217
>PRK14145 heat shock protein GrpE; Provisional
Probab=46.72 E-value=1.2e+02 Score=32.57 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 833 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
.+.|.+++.+|++++..|+.+.....++++.+.|+++.-...+..
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~ 91 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVE 91 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888888888888876654444443
No 218
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.72 E-value=1.5e+02 Score=31.04 Aligned_cols=44 Identities=32% Similarity=0.455 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRAQVE--------SLRQRCEFQELELQKSTKKAQEA 871 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~q~~--------~~~~~~~~~~~~~~~~~k~~~~~ 871 (1065)
++.+.+.-|++|+.+|++.++ ..+.....++.+|+.+..++...
T Consensus 88 eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~e 139 (177)
T PF07798_consen 88 EIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTE 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555332 33344444555555555554443
No 219
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=46.59 E-value=48 Score=31.89 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~ 871 (1065)
..+.+|.-+-++.|++++.+|++.+.++|+.+..++-++++.++.+
T Consensus 71 r~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~ 116 (120)
T KOG3478|consen 71 RTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPA 116 (120)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456777789999999999999999999999999998888866543
No 220
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=46.58 E-value=1.7e+02 Score=29.68 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001504 884 AAKDVIKSLTAQLKDMA 900 (1065)
Q Consensus 884 ~~~e~ik~l~~qlk~~~ 900 (1065)
..+-.+.-|..|++++.
T Consensus 123 ~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 123 ESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 45556677777888764
No 221
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=46.46 E-value=1.1e+02 Score=30.95 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVA 875 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a 875 (1065)
..+.++-+.+..+|+.+.+..+.+|+.++.....+..-|
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da 47 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILDA 47 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345666666777778887778888777777655544433
No 222
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=46.32 E-value=57 Score=30.07 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=13.3
Q ss_pred HHHHHHHHHHH--HHHHHHhcCC
Q 001504 884 AAKDVIKSLTA--QLKDMAERLP 904 (1065)
Q Consensus 884 ~~~e~ik~l~~--qlk~~~~k~~ 904 (1065)
..++.|+-|-. .|||++..|=
T Consensus 37 ~v~~hI~lLheYNeiKD~gQ~Li 59 (83)
T PF07061_consen 37 IVKRHIKLLHEYNEIKDIGQGLI 59 (83)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 44556776765 7777766653
No 223
>PRK14144 heat shock protein GrpE; Provisional
Probab=46.10 E-value=95 Score=33.37 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSL 892 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l 892 (1065)
-|.+++..|++|++.|+.++....++++.+.|.++.-...+...+.. +.+++++-.+
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~-~~~~~LLpV~ 105 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVE-KLISALLPVV 105 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHH
Confidence 36677888888999999988888899988888876655555543322 3444443333
No 224
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.16 E-value=84 Score=34.06 Aligned_cols=41 Identities=29% Similarity=0.393 Sum_probs=24.2
Q ss_pred hhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELL----------NQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 826 ~~~~~~~~~~~----------~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
.+.+++-|+++ .|||+-+|++++.|+..-|.+++|+..+..
T Consensus 71 ene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 71 ENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 46667777743 345666666666666666666666554433
No 225
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.95 E-value=1e+02 Score=27.65 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 840 VLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
|.+|+.+-+.|..+=..++.-|.++.+++
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~ 42 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKI 42 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444444333334444444333
No 226
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.85 E-value=86 Score=26.64 Aligned_cols=40 Identities=10% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 874 (1065)
-|-.||.+|...+.+++.+-+....+|++..+.+++-+.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888887776654
No 227
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=44.56 E-value=19 Score=43.41 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
.+|+..|| |++.|++|.+.+++|++.+++++++
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhcccccccch
Confidence 44555555 5666655555555555555555443
No 228
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=44.53 E-value=2.3e+02 Score=30.21 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRAQVESLR 851 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~q~~~~~ 851 (1065)
.+...|.-|.+|+..|+.|.++|.
T Consensus 33 ~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 33 TAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544
No 229
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.51 E-value=1.6e+02 Score=35.04 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQ 846 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q 846 (1065)
.++++....|.+++.+|++|
T Consensus 222 ~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555553
No 230
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.25 E-value=2.8e+02 Score=31.82 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAA 876 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~ 876 (1065)
+.+.+.-..|.||-..|+.++..++.+|..+..++..+.+..-..-.-|.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE 72 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE 72 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888899999999999999998888888877765444333333
No 231
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=44.14 E-value=2.2e+02 Score=28.10 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHH----------------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCE---FQELE----------------LQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQ 895 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~---~~~~~----------------~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~q 895 (1065)
.|.+||+..|.|+++|..-|. +.+.+ +.+++-+++++-..+..+=++-.+-+|.|++--++
T Consensus 34 ~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~ 113 (131)
T KOG1760|consen 34 DLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDE 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777765443 33333 55677777777777777777766777888887778
Q ss_pred HHHH
Q 001504 896 LKDM 899 (1065)
Q Consensus 896 lk~~ 899 (1065)
||.|
T Consensus 114 LK~~ 117 (131)
T KOG1760|consen 114 LKKV 117 (131)
T ss_pred HHHH
Confidence 8764
No 232
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.13 E-value=43 Score=40.50 Aligned_cols=70 Identities=26% Similarity=0.333 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ------EAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~------~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
.|.+++.+|+.|++.++++.+..+..|+++++.-+ +.......=....+..++.++.|..+|++|.+.+-
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555554111 00011111111123445566667777776666653
No 233
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.59 E-value=1.6e+02 Score=27.86 Aligned_cols=63 Identities=27% Similarity=0.321 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 001504 831 KTNELLNQEVLKLRAQVESLRQRCEFQE---------LELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQ 895 (1065)
Q Consensus 831 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~---------~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~q 895 (1065)
.-.+.+..|+.+|+.+++.|....++.. .||+.+.++++.|...++. .|-+.-.+-|+.|..+
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~k 83 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKKK 83 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4455778899999999999988766543 6899999999988877765 3433444445555443
No 234
>smart00338 BRLZ basic region leucin zipper.
Probab=43.57 E-value=64 Score=27.89 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
+-|..+|..|.++.+.|..+...+..|++.+..++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777777777777666543
No 235
>PHA02713 hypothetical protein; Provisional
Probab=43.55 E-value=3.3e+02 Score=33.98 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=11.7
Q ss_pred eEEEEecCCcEEEEeCC
Q 001504 401 HTALITSTGQLFTFGDG 417 (1065)
Q Consensus 401 hs~aLt~dG~Vy~wG~N 417 (1065)
+..+..-+|+||.+|-.
T Consensus 344 ~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred ceeEEEECCEEEEECCc
Confidence 33444558999999953
No 236
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.45 E-value=3e+02 Score=32.76 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 832 TNELLNQEVLKLRAQVESLRQRCEFQELEL 861 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 861 (1065)
.-..|.+|+..+|+....|+.+++.+..++
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555433
No 237
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.36 E-value=9.1e+02 Score=32.24 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=35.1
Q ss_pred EEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeeEEEEcCCcceeeecCCeEEEEeCC
Q 001504 516 LTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKG 584 (1065)
Q Consensus 516 htvaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLT~dG~VytWG~n 584 (1065)
+.+.|+..|++|+ +. ......+..+.....|-++.|..-.+...=-+
T Consensus 593 ~~~GLs~~~~Ly~-n~---------------------~~la~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 593 VLFGLSSNGRLYA-NS---------------------RLLASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEECCCCEEEE-CC---------------------EEEecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 6888999999996 21 11235688888889998888888877776655
No 238
>PF15294 Leu_zip: Leucine zipper
Probab=43.33 E-value=61 Score=36.48 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 831 KTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVA 875 (1065)
Q Consensus 831 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a 875 (1065)
+.-+-|.+|..+|++.+.+|..+|-..-.|=-+++.++++.-..+
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~ 176 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQ 176 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555444444444555555544433
No 239
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=43.28 E-value=9e+02 Score=31.72 Aligned_cols=212 Identities=11% Similarity=-0.000 Sum_probs=100.2
Q ss_pred eCCCeEEEEEeCCcEEEeCCCCCCCCc---CCCCCCcceeeeeeecCCCCCCcEEEEEec-----CCeEEEEecCCcEEE
Q 001504 342 CGEFHTCAVTMAGELYTWGDGTHNAGL---LGHGTDVSHWIPKRISGPLEGLQVASVTCG-----PWHTALITSTGQLFT 413 (1065)
Q Consensus 342 ~G~~hs~aLT~dG~Vy~WG~n~~~~Gq---LG~g~~~~~~~P~~V~~~l~~~~Iv~IacG-----~~hs~aLt~dG~Vy~ 413 (1065)
....+.+++|+.|++|..-.. ..-. .+.|..... .+. ...+.+|+.+.+- ....+++|.+|.+.-
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~--~IP~~~r~~~G~~i~~----ll~-L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKR 616 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVY--QIPEASRTAKGKPIVN----LLP-LQPDERITAILSVKEFDDGLYLFFATKNGVVKK 616 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhh--hCcCCCcCCCCcCHHH----hcc-CCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEE
Confidence 345667888999999998221 2111 111211111 111 3356678777662 235788899998877
Q ss_pred EeCCCCCccCCCCCCCccccee-ecccccceEEEEecCC--ceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCC
Q 001504 414 FGDGTFGVLGHGDRKNVSYPRE-VESLSGLRTIAVACGV--WHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDK 490 (1065)
Q Consensus 414 wG~N~~GQLG~g~~~~~~~P~~-V~~l~~~~I~~IacG~--~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~ 490 (1065)
.-.+.+-..... ... +..-.+..++.+.... .+.+++ |++|++|.+-..+--..|....
T Consensus 617 i~l~~~~~~~r~-------G~~aiklke~D~lv~v~~~~~~d~lll~-----------Ts~Gr~~r~~v~eIp~~gr~~~ 678 (800)
T TIGR01063 617 TSLTEFSNIRSN-------GIIAIKLDDGDELISVRLTSGDDEVMLG-----------SKNGKAVRFPEEDVRPMGRAAR 678 (800)
T ss_pred EEhHHhhhhccC-------CcccccCCCCCEEEEEEEeCCCCEEEEE-----------ECCCcEEEEEhhhcCCcCCCCC
Confidence 654433211000 000 0000122344333222 233344 6789999886554433333221
Q ss_pred CCcccceEecccCCCCEEEEEec--CCEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeeEEE--EcC
Q 001504 491 EPRLKPTCVPALIDYNFHKVACG--HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIA--CGA 566 (1065)
Q Consensus 491 ~~~~~P~~V~~l~~~~I~~Ia~G--~~htvaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia--~G~ 566 (1065)
... .+..-.+..|+.+..- ..+.+++|+.|.+.-.=...+-....+ .+--..+.....+..++.+. -+.
T Consensus 679 Gv~----~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~---~kGv~~ikl~~~~d~lv~~~~v~~~ 751 (800)
T TIGR01063 679 GVR----GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG---GKGVKSIKITDRNGQVVGAIAVDDD 751 (800)
T ss_pred Cee----cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC---CcceEEEEccCCCCeEEEEEEecCC
Confidence 111 1222234556655542 335778888887776643332221110 00001111000112333322 234
Q ss_pred CcceeeecCCeEEEEeCCC
Q 001504 567 YHVAVLTSRNEVYTWGKGA 585 (1065)
Q Consensus 567 ~Hs~aLT~dG~VytWG~n~ 585 (1065)
...+++|.+|.+..+-.++
T Consensus 752 ~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 752 DELMLITSAGKLIRTSVQD 770 (800)
T ss_pred CeEEEEecCCeEEEeeHhh
Confidence 4578889999888776554
No 240
>PRK14154 heat shock protein GrpE; Provisional
Probab=43.05 E-value=2.3e+02 Score=30.72 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHH----hhhhhhhHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKK-A-------QEAMAVAA----EESSKAKAAKDVIKSLTA 894 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~-~-------~~~~~~a~----~e~~~~k~~~e~ik~l~~ 894 (1065)
+.+++..+-|.....+|+|..++++++.+....++.++..+ + -+....|- .+....++-.+-|+.+-.
T Consensus 62 ~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k 141 (208)
T PRK14154 62 TRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLD 141 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 45566666677778888889999998887777776666543 1 12222232 222234556677777777
Q ss_pred HHHHHHhcC
Q 001504 895 QLKDMAERL 903 (1065)
Q Consensus 895 qlk~~~~k~ 903 (1065)
||..+-++.
T Consensus 142 ~l~~vL~k~ 150 (208)
T PRK14154 142 LLHNTLAKH 150 (208)
T ss_pred HHHHHHHHC
Confidence 888877776
No 241
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=42.73 E-value=1.6e+02 Score=33.81 Aligned_cols=69 Identities=32% Similarity=0.426 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-------HHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCE-----------FQELELQKSTKKAQEAMAVAAEESSKAKAAKD-------VIKSLTAQL 896 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~-----------~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e-------~ik~l~~ql 896 (1065)
-|.+|...|+..++.|..|++ ..++|+|....+++.+...+..|.++++.=++ -+..|..+-
T Consensus 132 k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E 211 (309)
T PF09728_consen 132 KLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETE 211 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555554 55678888888999999999999998887777 555555544
Q ss_pred HHHHhcC
Q 001504 897 KDMAERL 903 (1065)
Q Consensus 897 k~~~~k~ 903 (1065)
++|-.+|
T Consensus 212 ~~Lr~QL 218 (309)
T PF09728_consen 212 KELREQL 218 (309)
T ss_pred HHHHHHH
Confidence 4444444
No 242
>PRK14157 heat shock protein GrpE; Provisional
Probab=42.68 E-value=1e+02 Score=33.80 Aligned_cols=44 Identities=5% Similarity=-0.008 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
+-|..|+..|++|+..|+.+....-.|.+.++|+.+.-...+..
T Consensus 80 ~~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~ 123 (227)
T PRK14157 80 DDTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQ 123 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888888888888876654444443
No 243
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.57 E-value=1.2e+02 Score=38.58 Aligned_cols=60 Identities=28% Similarity=0.312 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~ 901 (1065)
+=.-||+||+.|+..+...=-.+-..||+++++++.+-....+--+| |--|+.||+.|..
T Consensus 262 l~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~ek-------i~~L~e~l~aL~~ 321 (717)
T PF09730_consen 262 LNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEK-------INRLTEQLDALRK 321 (717)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 33569999999999998888888899999999998876666554444 6667777777765
No 244
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.52 E-value=50 Score=39.78 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 001504 884 AAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 884 ~~~e~ik~l~~qlk~~~~k~ 903 (1065)
.-.+-|+.|..|++.+..++
T Consensus 108 eLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 108 KLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHHHHhhhcCC
Confidence 34455777888887666553
No 245
>PLN02678 seryl-tRNA synthetase
Probab=42.33 E-value=63 Score=39.03 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=44.8
Q ss_pred ccchhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhHHHHHHHHH---
Q 001504 822 SKSITDSLKKTNE--LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEE----SSKAKAAKDVIKSL--- 892 (1065)
Q Consensus 822 ~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e----~~~~k~~~e~ik~l--- 892 (1065)
+..+...+++.+- .+..||.+|-.|-+.|..+.+.+..|.....|++.... ...++ -++.|.-|+-|+.|
T Consensus 15 ~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k-~~~~~~~~l~~~~~~Lk~ei~~le~~ 93 (448)
T PLN02678 15 PELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK-IAKEDATELIAETKELKKEITEKEAE 93 (448)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555655541 13567777777777777777777777777777664311 01111 11223334444444
Q ss_pred ----HHHHHHHHhcCC
Q 001504 893 ----TAQLKDMAERLP 904 (1065)
Q Consensus 893 ----~~qlk~~~~k~~ 904 (1065)
..+|.++..++|
T Consensus 94 ~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 94 VQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 445667777777
No 246
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.06 E-value=74 Score=34.62 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=26.5
Q ss_pred CCCeeEEEEcCCcceeeecCCeEEEEeCCC
Q 001504 556 GESVEEIACGAYHVAVLTSRNEVYTWGKGA 585 (1065)
Q Consensus 556 ~~~V~~Ia~G~~Hs~aLT~dG~VytWG~n~ 585 (1065)
+..++.+.|-..+.++||.+|.+|+|=-..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 578888999999999999999999996544
No 247
>PF15456 Uds1: Up-regulated During Septation
Probab=42.01 E-value=1.5e+02 Score=29.37 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=44.0
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhh----------hHHHHHHHHHHHHHHHHHhc
Q 001504 835 LL-NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA-MAVAAEESSKA----------KAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 835 ~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~-~~~a~~e~~~~----------k~~~e~ik~l~~qlk~~~~k 902 (1065)
+| -+||..|+.|+..|..+|+.....+. +..|+.+| ..++.--+++. +.+-|..-.++..+.+++.+
T Consensus 18 iLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~e 96 (124)
T PF15456_consen 18 ILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQE 96 (124)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHH
Confidence 45 45899999999999999999999988 55556554 44455433332 23334444445556666655
Q ss_pred C
Q 001504 903 L 903 (1065)
Q Consensus 903 ~ 903 (1065)
|
T Consensus 97 L 97 (124)
T PF15456_consen 97 L 97 (124)
T ss_pred H
Confidence 4
No 248
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.35 E-value=1.6e+02 Score=32.26 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEE 878 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e 878 (1065)
.+.++.+....|..+.+......++++.+++.|.....|+
T Consensus 46 ~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~ 85 (225)
T COG1842 46 ALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNED 85 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4444444556788888888888999999988887655443
No 249
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.27 E-value=83 Score=36.34 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 001504 887 DVIKSLTAQLKDMAER 902 (1065)
Q Consensus 887 e~ik~l~~qlk~~~~k 902 (1065)
.=|+.|.++++.|-..
T Consensus 276 ~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3355566666555443
No 250
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=41.21 E-value=2e+02 Score=31.32 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE-AMAVAAEESS-----KAKAAKDVIKSLTAQLKDMA 900 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~-~~~~a~~e~~-----~~k~~~e~ik~l~~qlk~~~ 900 (1065)
++....-|.+..++.++..+++.|+++.+.++.+|+........ ++..|..++. ..+.+.++||-+..+=+.|.
T Consensus 26 eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a~~v~ 105 (212)
T COG3599 26 EEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQAQRVF 105 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555544442111 1112221111 12356678888777666665
Q ss_pred hcC
Q 001504 901 ERL 903 (1065)
Q Consensus 901 ~k~ 903 (1065)
.+.
T Consensus 106 ~~a 108 (212)
T COG3599 106 GKA 108 (212)
T ss_pred Hhh
Confidence 553
No 251
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.11 E-value=61 Score=41.54 Aligned_cols=65 Identities=15% Similarity=0.490 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA-QEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~-~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
.++.++..|++.++.++.|.+.|+.+++ .++.. +....+ .+.-.+..+++++..+.+|++|..++
T Consensus 643 ~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~s~~L---~~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 643 RMKDQLQDLKASIEQLKKKLDYQQRQIE-SQKSPKKKSIVL---SESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCccC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777766666 22211 111111 12224567777777777777776654
No 252
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.88 E-value=1.3e+02 Score=39.02 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=5.4
Q ss_pred CHHHHHHHHHHHH
Q 001504 108 DKVEAEVWIAGLK 120 (1065)
Q Consensus 108 ~~~ea~~Wv~GL~ 120 (1065)
+.++.+.|..-+.
T Consensus 39 ~~~~i~~~l~~~~ 51 (771)
T TIGR01069 39 SVEESKEIIIKLT 51 (771)
T ss_pred CHHHHHHHHHHHH
Confidence 3444444444333
No 253
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=40.81 E-value=1.7e+02 Score=34.36 Aligned_cols=68 Identities=28% Similarity=0.427 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHh-----cCCCCCCC
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEE--SSKAKAAKDVIKSLTAQLKDMAE-----RLPPGVYD 909 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e--~~~~k~~~e~ik~l~~qlk~~~~-----k~~~~~~~ 909 (1065)
.+|+..|+..|+.+.+ +....+.++++..++.+| +.=..-|.+-++.|..+|++|-. .||.+.++
T Consensus 38 ~~e~~~L~~~v~~~~~--------~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e~~~l~~~l~~~e~~l~~~ll~~~~~D 109 (359)
T PRK00591 38 SKEYAELEPIVEAYRE--------YKQAQEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEELKILLLPKDPND 109 (359)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3566666665554443 333444555565665432 22234566667777777777663 47888877
Q ss_pred CCC
Q 001504 910 PEN 912 (1065)
Q Consensus 910 ~~~ 912 (1065)
..+
T Consensus 110 ~~~ 112 (359)
T PRK00591 110 DKN 112 (359)
T ss_pred cCC
Confidence 443
No 254
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=40.56 E-value=1.8e+02 Score=33.02 Aligned_cols=68 Identities=25% Similarity=0.327 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCE-------FQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-------~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
+|.+..-+.-|..|+..|+.+++.++.||+ ..+.+|..+.|.+++++..-.+=-.+....++=|.+|.
T Consensus 63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 344444455555566666665666555555 34455555566555554443332233334444333333
No 255
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.42 E-value=1.5e+02 Score=37.53 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~ 869 (1065)
+.+++.++++++..+.++.+..+.++++++++++
T Consensus 433 l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 433 AQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666665553
No 256
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=40.39 E-value=2.3e+02 Score=32.19 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001504 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAK 883 (1065)
Q Consensus 830 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k 883 (1065)
......+..|+..||.+|..+...-...+.++..+...+++.-.--.+|.+.++
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~ 99 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERK 99 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888777666666666665555555444333333333333
No 257
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.33 E-value=2.7e+02 Score=27.58 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 826 TDSLKKTNELLNQEVLKLRAQV---ESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~---~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
...+....+.|.+||.+|-.++ +.+..+...++.+++.++++.+-+..+-.|
T Consensus 39 l~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 39 LARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556667778888888888755 445566777788888888888888777666
No 258
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.28 E-value=1.1e+02 Score=37.74 Aligned_cols=50 Identities=32% Similarity=0.328 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 851 RQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 851 ~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
...++.++.+++++.+++.++...- -..++++|++.-|.++.+||+++-+
T Consensus 341 ~~~~~~Le~~~~~l~~~~~~~A~~L--s~~R~~~A~~L~~~v~~eL~~L~Me 390 (557)
T COG0497 341 EESLEALEKEVKKLKAELLEAAEAL--SAIRKKAAKELEKEVTAELKALAME 390 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456666677777766655432211 1345789999999999999996543
No 259
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=40.24 E-value=1.7e+02 Score=30.58 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLR--QRCEFQELELQKSTKKAQ 869 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~--~~~~~~~~~~~~~~k~~~ 869 (1065)
.+-.=.+|+..+|+.+|+.|+...+ ..-+.+..+|+++..++.
T Consensus 52 k~Y~FL~d~r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q~~ 96 (168)
T PF06102_consen 52 KNYGFLDDYREKEIKELKKQLKKTKDPEEREELKRELQRMESQLK 96 (168)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3445568888899999999998876 444555566666666543
No 260
>PRK10869 recombination and repair protein; Provisional
Probab=40.00 E-value=91 Score=38.80 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 001504 882 AKAAKDVIKSLTAQLKDMAE 901 (1065)
Q Consensus 882 ~k~~~e~ik~l~~qlk~~~~ 901 (1065)
.++|+++-+.++.+|++|.-
T Consensus 369 ~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 369 QRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 56899999999999999654
No 261
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=39.83 E-value=7.2e+02 Score=29.64 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=19.4
Q ss_pred CCeeEEEEc--CCcceeeecCCeEEEEe
Q 001504 557 ESVEEIACG--AYHVAVLTSRNEVYTWG 582 (1065)
Q Consensus 557 ~~V~~Ia~G--~~Hs~aLT~dG~VytWG 582 (1065)
..|.+|+.. +.|.++++.+|.+|+.=
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 457777665 45778889999999853
No 262
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=39.81 E-value=20 Score=40.96 Aligned_cols=75 Identities=23% Similarity=0.457 Sum_probs=42.2
Q ss_pred ecCCCccceEeee-eccccccccccccccccccccccccccccCCceeecCCCcccccccccCCC-CCCceE--eccchH
Q 001504 615 ACGSNYSAAICLH-KWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPN-PGKPYR--VCDCCF 690 (1065)
Q Consensus 615 acG~~hT~al~~~-~wvs~~d~s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~-~~kp~R--VC~~C~ 690 (1065)
.||+...+.+... .-..|.-.-.|+-|...|.+. |..|-+||.- .+.....+... ....+| +|+.|.
T Consensus 189 vCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~~-------~~l~y~~~e~~~~~~~~r~e~C~~C~ 259 (305)
T TIGR01562 189 ACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV--RVKCSHCEES-------KHLAYLSLEHDAEKAVLKAETCDSCQ 259 (305)
T ss_pred CCCChhhhhhhcccCCCCCceEEEcCCCCCccccc--CccCCCCCCC-------CceeeEeecCCCCCcceEEeeccccc
Confidence 4666665543211 112344566788888766664 6778888752 22212222221 123455 999999
Q ss_pred hHhhhhcc
Q 001504 691 AKLNKVSE 698 (1065)
Q Consensus 691 ~~l~~~~~ 698 (1065)
.-++.+..
T Consensus 260 ~YlK~~~~ 267 (305)
T TIGR01562 260 GYLKILYQ 267 (305)
T ss_pred cchhhhcc
Confidence 99887643
No 263
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.81 E-value=2.3e+02 Score=32.69 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRA 845 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~ 845 (1065)
+...+....+.|..|+.+|++
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666667776666
No 264
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.72 E-value=86 Score=35.65 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRAQVESLR 851 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~q~~~~~ 851 (1065)
.|++-|+.|.+|...|+.+|+.|+
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777664
No 265
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=39.62 E-value=1.5e+02 Score=36.08 Aligned_cols=84 Identities=25% Similarity=0.292 Sum_probs=64.3
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhhHHHHHHHHH
Q 001504 821 FSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES--------SKAKAAKDVIKSL 892 (1065)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~--------~~~k~~~e~ik~l 892 (1065)
..+-+...-++.|.+|+-|++--.++..-+..+.+-++..++.+--.++.|..+|..|. .|..+.-+-++.|
T Consensus 277 Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l 356 (531)
T PF15450_consen 277 LTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAEL 356 (531)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555677788999999999988888888888888888888877766666665555542 3445666778889
Q ss_pred HHHHHHHHhcCC
Q 001504 893 TAQLKDMAERLP 904 (1065)
Q Consensus 893 ~~qlk~~~~k~~ 904 (1065)
..||||+.++++
T Consensus 357 ~~~lkDLd~~~~ 368 (531)
T PF15450_consen 357 MRQLKDLDDHIL 368 (531)
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
No 266
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.56 E-value=2.7e+02 Score=25.57 Aligned_cols=29 Identities=7% Similarity=0.113 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
+|+..+..|++.+-++.+.+-.+++...+
T Consensus 40 ~~~~~i~~e~~~ll~~~n~l~~dv~~k~~ 68 (90)
T PF06103_consen 40 EQVDPITKEINDLLHNTNELLEDVNEKLE 68 (90)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444433333333333333
No 267
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.43 E-value=88 Score=36.03 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
.+|+...+.+++.++++.+..+..|+....+
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~ 247 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555544444
No 268
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=39.32 E-value=1.8e+02 Score=29.42 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQR--CEFQELELQKSTKKAQEAMAVA 875 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~--~~~~~~~~~~~~k~~~~~~~~a 875 (1065)
-|..|+..++..++.|.+. +......++++.++|+.+-...
T Consensus 71 ALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888876 7777777888888777776665
No 269
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=39.23 E-value=2.7e+02 Score=27.72 Aligned_cols=61 Identities=23% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQ 895 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~q 895 (1065)
.|..|+..|+.+++.+..+.+....+|+.-.+.+++|-.-=..|--+|-.+-+.|..|-.|
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e 67 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREE 67 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444455555544444444444444444444444444443333444443333333333333
No 270
>PRK00846 hypothetical protein; Provisional
Probab=39.15 E-value=3e+02 Score=25.08 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 843 LRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 843 ~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
|.+.++.|+.+.-.||.-|+.+.+.+-+-+..-.. -++-++.|+.+||+|....
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~-------L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGAR-------NAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccc
Confidence 44677778888888887777777755443332222 3334666666777765443
No 271
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=39.07 E-value=70 Score=33.11 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVE------------SLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~------------~~~~~~~~~~~~~~~~~k 866 (1065)
..+...-|..|+.+|+.|.. .|++|.+..+.||+++++
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777654 455555555555555544
No 272
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.04 E-value=2.7e+02 Score=32.09 Aligned_cols=79 Identities=24% Similarity=0.183 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
....+++-.+.|.+|+.+|+.+.+.|.++.+.++.|+++++++-++-|..-..=.-..-...+-..+|.+|+.-+..+|
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888888888888888888887775554444322211112233344455666655444443
No 273
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.94 E-value=1.3e+02 Score=33.71 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC
Q 001504 882 AKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 882 ~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
.|..+.=|+.|...|++--+.|
T Consensus 82 ik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 82 IKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555544444
No 274
>PLN02678 seryl-tRNA synthetase
Probab=38.74 E-value=1.5e+02 Score=35.86 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001504 883 KAAKDVIKSLTAQLKDMAERLPPGVY 908 (1065)
Q Consensus 883 k~~~e~ik~l~~qlk~~~~k~~~~~~ 908 (1065)
...+++-..|...+..|-.-+.++++
T Consensus 92 ~~~~~~~~~l~~~~~~iPNi~~~~VP 117 (448)
T PLN02678 92 AEVQEAKAALDAKLKTIGNLVHDSVP 117 (448)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 34556667777777776665555553
No 275
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.64 E-value=5.1e+02 Score=30.10 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQ 862 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 862 (1065)
.....++-.-+.+|+.+|+++.++|++..|.+..-.|
T Consensus 213 sa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~ 249 (365)
T KOG2391|consen 213 SAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQ 249 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Confidence 3445677778899999999999999887554443333
No 276
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=38.55 E-value=97 Score=32.72 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001504 841 LKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPGVYD 909 (1065)
Q Consensus 841 ~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~~~~~~ 909 (1065)
+++|+.|..|+++.+.....||.+.+... .-...|--|+|-+.-+.....-+|+++|++.|-
T Consensus 23 E~iravV~~ie~~~r~iq~~L~~vhq~~~-------~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyy 84 (226)
T KOG3067|consen 23 EKIRAVVDEIEEKLREIQLLLQNVHQNEN-------LIPKECGLAREDLENIKQKYRMLAELPPAGQYY 84 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cchHHHHHHHHHHHHHHHHHHHHhhcCCccceE
Confidence 35666677777777666666666655210 112235566777777777888899999988873
No 277
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=38.54 E-value=1.9e+02 Score=36.24 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=15.6
Q ss_pred EecCCEEEEEecCCcEEEEeC
Q 001504 511 ACGHSLTVGLTTSGHVFTMGS 531 (1065)
Q Consensus 511 a~G~~htvaLT~dG~Vy~wGs 531 (1065)
.....+.-+..-+|.+|+-|.
T Consensus 510 ~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 510 TSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ccccccccEEEECCEEEEEec
Confidence 345666666777899999986
No 278
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=38.34 E-value=83 Score=40.52 Aligned_cols=65 Identities=35% Similarity=0.449 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTK------------KAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMA 900 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k------------~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~ 900 (1065)
.|..|+.+-|.--+.+..+|+.++.+|++..+ |++.-+.+|+. |.|--.-.|-|-+|-.|||.|+
T Consensus 684 ~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaA-A~KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 684 SLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAA-AEKLAECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444444445678889999999998876 33444455443 3343344578999999999987
No 279
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=38.32 E-value=1.5e+02 Score=27.35 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
+.+++..++.|+++.+..-.|+...-++.++-.+.+.+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555544444444443
No 280
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=38.31 E-value=3.3e+02 Score=28.28 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQ---EVLKLRAQVESLRQR 853 (1065)
Q Consensus 827 ~~~~~~~~~~~~---~~~~~~~q~~~~~~~ 853 (1065)
+-+.+..+-+.+ +..+.+.+++.+.++
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e 78 (167)
T PRK08475 49 NFYKSRINKISKRLEEIQEKLKESKEKKED 78 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433 333344444444443
No 281
>PRK14164 heat shock protein GrpE; Provisional
Probab=38.07 E-value=1.3e+02 Score=32.85 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~ 872 (1065)
.++..|++|++.|+.+......|.+.+.|+++.-.
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~ 111 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERER 111 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777777777777777777766654433
No 282
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.74 E-value=1.3e+02 Score=31.20 Aligned_cols=33 Identities=39% Similarity=0.434 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
|..|.++|+.|++.|+++-+.++.|++++.+++
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666665543
No 283
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=37.64 E-value=3.5e+02 Score=30.08 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=29.2
Q ss_pred CCcEEEEEecCCeEEEEecCCcEEEEeCCCCCc-cCCCCCCCcccceeec
Q 001504 389 GLQVASVTCGPWHTALITSTGQLFTFGDGTFGV-LGHGDRKNVSYPREVE 437 (1065)
Q Consensus 389 ~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~GQ-LG~g~~~~~~~P~~V~ 437 (1065)
+.+|-.++.-..| ++..-+|.||.|-+|.+-. ++....-....|..+.
T Consensus 62 dgpiy~~~f~d~~-Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 62 DGPIYYLAFHDDF-LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred CCCeeeeeeehhh-eeeccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 3456666654444 3344579999999998866 5554444444555553
No 284
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.63 E-value=94 Score=26.79 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQK 863 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~ 863 (1065)
+|..|..+...|..+++.+..+++.
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 285
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.49 E-value=1.1e+02 Score=29.92 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
|..--..|..+++.|+++.+....+++++++++++
T Consensus 71 Ll~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~ 105 (118)
T PF13815_consen 71 LLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKK 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456666677777666666666666665444
No 286
>PRK00295 hypothetical protein; Provisional
Probab=37.32 E-value=96 Score=27.44 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHh
Q 001504 889 IKSLTAQLKDMAE 901 (1065)
Q Consensus 889 ik~l~~qlk~~~~ 901 (1065)
++.|..||+++..
T Consensus 42 l~~L~~rl~~~~~ 54 (68)
T PRK00295 42 MAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHhhc
Confidence 6667778888763
No 287
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.31 E-value=63 Score=34.24 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 001504 889 IKSLTAQLKDMA 900 (1065)
Q Consensus 889 ik~l~~qlk~~~ 900 (1065)
++.|..|.+.+.
T Consensus 177 ~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 177 IEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHH
Confidence 444555555543
No 288
>PRK00736 hypothetical protein; Provisional
Probab=37.30 E-value=88 Score=27.66 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhc
Q 001504 889 IKSLTAQLKDMAER 902 (1065)
Q Consensus 889 ik~l~~qlk~~~~k 902 (1065)
++.|..||+++...
T Consensus 42 l~~L~~rl~~~~~~ 55 (68)
T PRK00736 42 LDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHhccc
Confidence 55677777777543
No 289
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=37.25 E-value=1.3e+02 Score=29.48 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
.|.+...+|+.|++.|.++....+..+.++.+-
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~ 35 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETA 35 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777553
No 290
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.02 E-value=2.5e+02 Score=28.35 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
..+.+...|.-|.+....++.+++.++.++..+-.+++.+..+.
T Consensus 35 ~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~ 78 (150)
T PF07200_consen 35 EREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEY 78 (150)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666766665554444444444444444444444444433
No 291
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=37.01 E-value=7.4e+02 Score=28.93 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=13.5
Q ss_pred CeEEEEEeCCcEEEeCCC
Q 001504 345 FHTCAVTMAGELYTWGDG 362 (1065)
Q Consensus 345 ~hs~aLT~dG~Vy~WG~n 362 (1065)
.|+++...+|+||++|..
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999974
No 292
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.98 E-value=65 Score=28.45 Aligned_cols=12 Identities=17% Similarity=0.581 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHH
Q 001504 889 IKSLTAQLKDMA 900 (1065)
Q Consensus 889 ik~l~~qlk~~~ 900 (1065)
++.|..+|++|.
T Consensus 41 l~~L~~rl~~~~ 52 (69)
T PF04102_consen 41 LRLLRERLRELE 52 (69)
T ss_dssp HHHHHHT-----
T ss_pred HHHHHHHHHHhc
Confidence 444555555554
No 293
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.97 E-value=1.7e+02 Score=37.41 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
++.|..|+..|.+.++....++..+++.++-+..+|.+-..+..+|.+-+-++..+|--|...+.
T Consensus 400 ~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC 464 (717)
T PF09730_consen 400 VQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVC 464 (717)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444554545555777788888888888888888888999999999988888777765
No 294
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=36.83 E-value=1.3e+02 Score=29.63 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001504 836 LNQ---EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1065)
Q Consensus 836 ~~~---~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~ 898 (1065)
|++ ||..|...+..+..+..+..++++-...+-+...++|+. |||-|+++++.
T Consensus 1 l~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAK----------IIkDisdkIdk 56 (121)
T PF03310_consen 1 LATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAK----------IIKDISDKIDK 56 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHH----------HHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH----------HHHHHHHHHHh
No 295
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=36.80 E-value=1.5e+02 Score=26.63 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
...+|.++|..+-..+..+..|+++++.+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555443
No 296
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=36.80 E-value=2.1e+02 Score=27.48 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 843 LRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 843 ~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
+-.||..|.+.-+.|.++|..++-+++ +.-+-|+++-..|..|-.+|
T Consensus 51 qgeqI~kL~e~V~~QGEqIkel~~e~k--------------~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 51 QGEQINKLTEKVDKQGEQIKELQVEQK--------------AQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 334777777777777777777777666 33445677777788877665
No 297
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.59 E-value=2.1e+02 Score=32.57 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------hhHHHHHHHHHHHHHHHHHhcC
Q 001504 845 AQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK------------AKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 845 ~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~------------~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
.|+..+..+-..++.|+...+++++.+...+..|... ++.+++.++.+..+|..+..++
T Consensus 135 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~ 205 (301)
T PF14362_consen 135 AQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQI 205 (301)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3555666666666667777777777776666666555 6777777877777766665553
No 298
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=36.58 E-value=4e+02 Score=27.51 Aligned_cols=36 Identities=25% Similarity=0.181 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhhhhH-H--------HHHHHHHHHHHHHHHhcC
Q 001504 868 AQEAMAVAAEESSKAKA-A--------KDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 868 ~~~~~~~a~~e~~~~k~-~--------~e~ik~l~~qlk~~~~k~ 903 (1065)
.+++..-|.+|+.+.++ | ..+++.|-+|+-+|+-.+
T Consensus 87 ~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~i 131 (154)
T PRK06568 87 IQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKL 131 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554331 1 234555555666665544
No 299
>PRK04325 hypothetical protein; Provisional
Probab=36.49 E-value=3e+02 Score=24.73 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 843 LRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 843 ~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
+.+.+..|+.|.-.||.-|+.+.+-+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv 32 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATV 32 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777776666644
No 300
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.45 E-value=2.5e+02 Score=27.02 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKST--KKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~--k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
-.+++.+|++.+..+.++.+..|.+++.+. +.+.+--..-++=....++..+-|+.++.|+.-|-|+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778887777777777777777777763 3222211111121222455566677777766655544
No 301
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.38 E-value=1.9e+02 Score=35.05 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKST----KKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~----k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
-|..|-++|++|.+.|+++-...+..|+..- +++++......+| ....+..|-.|+.||+.+..+
T Consensus 77 ~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~---~~~~~~~l~~l~~~l~~~~~~ 145 (472)
T TIGR03752 77 KLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSE---RQQLQGLIDQLQRRLAGVLTG 145 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcccc
Confidence 3445666666666666666555555544332 2222222222222 234677888899999987765
No 302
>PRK05560 DNA gyrase subunit A; Validated
Probab=36.17 E-value=1.1e+03 Score=30.83 Aligned_cols=212 Identities=10% Similarity=0.011 Sum_probs=101.1
Q ss_pred eCCCeEEEEEeCCcEEEeCCCCCCCCcC---CCCCCcceeeeeeecCCCCCCcEEEEEecC-----CeEEEEecCCcEEE
Q 001504 342 CGEFHTCAVTMAGELYTWGDGTHNAGLL---GHGTDVSHWIPKRISGPLEGLQVASVTCGP-----WHTALITSTGQLFT 413 (1065)
Q Consensus 342 ~G~~hs~aLT~dG~Vy~WG~n~~~~GqL---G~g~~~~~~~P~~V~~~l~~~~Iv~IacG~-----~hs~aLt~dG~Vy~ 413 (1065)
....+.+++|+.|++|..-.. ..-.. +.|.... ..+. +..+.+|+.+.+-. ...+++|.+|.+.-
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~--~iP~~~~~~~G~~i~----~ll~-L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKR 618 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVY--EIPEASRTARGRPIV----NLLP-LEPGEKITAILPVREFDDDKYLFFATKNGTVKK 618 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhh--hCcCCCcCCCCeEHH----HhcC-CCCCceEEEEEeccCCCCCCEEEEEeCCCEEEE
Confidence 345667888999999987432 11111 1111111 1122 34567788877654 35788899998776
Q ss_pred EeCCCCCccCCCCCCCcccceeecccccceEEEEecCCc--eEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCC
Q 001504 414 FGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVW--HTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKE 491 (1065)
Q Consensus 414 wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~--ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~ 491 (1065)
.-.+.+-....+. ...+..-.+..++.+..+.. +.+++ |+.|++|.+-..+--..|....
T Consensus 619 i~l~~~~~~~r~G------~~~ikLke~D~lv~v~~~~~~d~lll~-----------T~~Gr~~r~~~~eIp~~gr~~~- 680 (805)
T PRK05560 619 TSLSEFSNIRSNG------IIAINLDEGDELIGVRLTDGDDDILLA-----------TKNGKAIRFPESDVRPMGRTAR- 680 (805)
T ss_pred EEhHHhhhcccCC------ceeeccCCCCEEEEEEEeCCCCEEEEE-----------ECCCcEEEEEhhhcCccCcccC-
Confidence 6433332111000 00000012234444433333 33444 6799999886544322322211
Q ss_pred CcccceEeccc-CCCCEEEEEecC---CEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeeEE--EEc
Q 001504 492 PRLKPTCVPAL-IDYNFHKVACGH---SLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEI--ACG 565 (1065)
Q Consensus 492 ~~~~P~~V~~l-~~~~I~~Ia~G~---~htvaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~I--a~G 565 (1065)
...+..+ .+..|+.+.... .+.+++|+.|.+.-.-.+.+-....+. .--..+...-.+..++.+ ..+
T Consensus 681 ----Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~---kG~~~lkl~~~~d~lv~v~~v~~ 753 (805)
T PRK05560 681 ----GVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG---KGVITIKITEKNGKLVGALPVDD 753 (805)
T ss_pred ----CcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC---CcEEeeeccCCCCeEEEEEEecC
Confidence 1111122 345566655443 257788888877665433322111100 000011100011233332 234
Q ss_pred CCcceeeecCCeEEEEeCCC
Q 001504 566 AYHVAVLTSRNEVYTWGKGA 585 (1065)
Q Consensus 566 ~~Hs~aLT~dG~VytWG~n~ 585 (1065)
..+.+++|.+|.+..+-.++
T Consensus 754 ~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 754 DDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred CCeEEEEecCCeEEEEEHHH
Confidence 45688889999888876554
No 303
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.12 E-value=93 Score=30.08 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1065)
Q Consensus 834 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~ 873 (1065)
..|.+||..|+.+|..|-++=..+..|.+.+.+.+.+...
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777778877777777777777777777666443
No 304
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.11 E-value=2.5e+02 Score=27.57 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 001504 88 YLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 88 ~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1065)
..-|.|...+ .+..=|-|+|.+|++.||..|+...
T Consensus 77 ~~VF~L~~~~-g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 77 PHVFRLRTAD-WREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred CcEEEEEcCC-CCEEEEECCCHHHHHHHHHHHHHHH
Confidence 4556666643 3667899999999999999998765
No 305
>PRK14161 heat shock protein GrpE; Provisional
Probab=36.10 E-value=2.7e+02 Score=29.43 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK--AKAAKDVIKSLTA 894 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~--~k~~~e~ik~l~~ 894 (1065)
..+-...|++|.+.|.-++++++.|+++.+.+..++.|....++..-..+..|-.. ..+...+++.|-.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLp 77 (178)
T PRK14161 7 ENNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLN 77 (178)
T ss_pred cccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456678888888888888888888888777777777666655554444433332 1233344444443
No 306
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=36.08 E-value=8.6e+02 Score=29.40 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=16.0
Q ss_pred EEEEEecCCeEEEEecCCcEEEEe
Q 001504 392 VASVTCGPWHTALITSTGQLFTFG 415 (1065)
Q Consensus 392 Iv~IacG~~hs~aLt~dG~Vy~wG 415 (1065)
.+.|.-+..+.++=+++|++|..=
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eEEEcccccEEEecCCcceEEeee
Confidence 344445666777778899888653
No 307
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.03 E-value=2.3e+02 Score=33.83 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=25.7
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 821 FSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCE 855 (1065)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 855 (1065)
.-...+-+|.++-..|+++++.|+.+++...++|.
T Consensus 230 ~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r 264 (439)
T KOG2911|consen 230 EIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLR 264 (439)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667888888888888888888877777766
No 308
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=35.91 E-value=36 Score=23.70 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRC 854 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~ 854 (1065)
+||.+||..|.+|++|.
T Consensus 1 ~E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 1 REMNRLRNRISDLERQL 17 (23)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 48888999998888764
No 309
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=35.86 E-value=8.3e+02 Score=29.16 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=40.9
Q ss_pred CCEEEEEe-cCCeEEEEEcCCcEEEEeCCCCCccCCCCCcceeccEEeec--cCCCCEEEEEeCCCeEEEEEeCCcEEEe
Q 001504 283 LDVHHIAC-GVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLES--LTMTSVDFVTCGEFHTCAVTMAGELYTW 359 (1065)
Q Consensus 283 ~~V~~Ia~-G~~Hs~~LT~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~--l~~~~I~~Va~G~~hs~aLT~dG~Vy~W 359 (1065)
.+|+.+.- -..+.++|+++|.|+.+- -.|.. ....+..+.. ....+|-.+..+.+-.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 35666664 346788999999988873 22322 1111222211 1123344445666778899999999987
No 310
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=35.83 E-value=1.2e+02 Score=36.57 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC
Q 001504 883 KAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 883 k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
+.+.|.|+..-.||..|..-|-
T Consensus 399 ~~~~e~i~~kE~eLe~L~~elD 420 (492)
T PF06273_consen 399 ESLREEISQKEKELEKLTRELD 420 (492)
T ss_pred hhHHHHHHHHHHHHHHHHHHhh
Confidence 5677778877778776666553
No 311
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=35.81 E-value=4.5e+02 Score=27.16 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001504 841 LKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK 881 (1065)
Q Consensus 841 ~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~ 881 (1065)
.++|.+.+.|..+ .+.+|+...++.++...-|.+++.+
T Consensus 48 e~~r~eA~~l~~e---~e~~L~~Ar~EA~~Ii~~A~~~a~~ 85 (154)
T PRK06568 48 EKLKEDAALLFEQ---TNAQIKKLETLRSQMIEESNEVTKK 85 (154)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 4445555555555555555555544
No 312
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=35.60 E-value=1.1e+02 Score=34.00 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 001504 886 KDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 886 ~e~ik~l~~qlk~~~~k~ 903 (1065)
++-.|-|+.+|++|-++.
T Consensus 215 r~~~~~l~~el~~aK~~~ 232 (264)
T PF07246_consen 215 RNESKWLEHELSDAKEDM 232 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445667777777766654
No 313
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=35.51 E-value=2.6e+02 Score=31.31 Aligned_cols=63 Identities=22% Similarity=0.415 Sum_probs=35.7
Q ss_pred CCeEEEEEeCCcEEEeCCCCCCCCcCCCC----CCcceeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEe
Q 001504 344 EFHTCAVTMAGELYTWGDGTHNAGLLGHG----TDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFG 415 (1065)
Q Consensus 344 ~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g----~~~~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG 415 (1065)
..|+++.- ++++|.||.-....|.+-.- .....|.-.+|.+.+.+ +-..|++++- ..++|.||
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~-gn~MyiFG 146 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVW-GNQMYIFG 146 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEE-CcEEEEec
Confidence 46776665 77999999653334443321 12233444444433322 2345887776 45789998
No 314
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=35.48 E-value=1e+02 Score=37.00 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQ---------VESLRQRCEF-QELELQKSTKKAQEAMAVAAE--ESSKAKAAKDVIKSLTA 894 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q---------~~~~~~~~~~-~~~~~~~~~k~~~~~~~~a~~--e~~~~k~~~e~ik~l~~ 894 (1065)
+.+.+.++++.+|+..+... |..|+++++. .+.||++.-+++... ....+ |..-+..++.++...+.
T Consensus 316 ~~~~~a~~ii~~~~~~f~~~~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~~-~~~~~~~~~~~~~~~~k~lh~p~~ 394 (423)
T PRK00045 316 EAAEKAEAIVEEEVAEFMEWLRSLEVVPTIRALREQAEEIREEELERALKKLGPG-EDEEEVLEKLARSLVNKLLHAPTV 394 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889998887663 5678888765 678899988876321 11111 11113455666666666
Q ss_pred HHHH
Q 001504 895 QLKD 898 (1065)
Q Consensus 895 qlk~ 898 (1065)
+||+
T Consensus 395 ~lr~ 398 (423)
T PRK00045 395 RLKE 398 (423)
T ss_pred HHHh
Confidence 7777
No 315
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=35.47 E-value=1.7e+02 Score=28.94 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=15.0
Q ss_pred EEeCCHHHHHHHHHHHH
Q 001504 104 LICKDKVEAEVWIAGLK 120 (1065)
Q Consensus 104 Lva~~~~ea~~Wv~GL~ 120 (1065)
|.|++++|.+.|+..|+
T Consensus 104 lsaDt~eer~~W~~ain 120 (122)
T cd01263 104 LSADTKEERQTWLSLLN 120 (122)
T ss_pred EecCCHHHHHHHHHHHh
Confidence 55899999999999886
No 316
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=35.28 E-value=3.9e+02 Score=25.77 Aligned_cols=35 Identities=9% Similarity=0.288 Sum_probs=29.9
Q ss_pred CCCCceEEEEEcCCCceEEEEeCCHHHHHHHHHHH
Q 001504 85 EKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGL 119 (1065)
Q Consensus 85 ~~~~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL 119 (1065)
..--.||-|+...+..++=|.|.++++.+.|+..+
T Consensus 67 ~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~ 101 (104)
T cd01249 67 IDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAM 101 (104)
T ss_pred ccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhh
Confidence 33457999999887778999999999999999876
No 317
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.26 E-value=1.2e+02 Score=28.87 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
.....+.|...+..|.+.++.|+.+.+..+.+++++++++.+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666554
No 318
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=35.18 E-value=3.1e+02 Score=27.65 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~ 871 (1065)
.+.+.|-.+..++..+|+|+..+-..++.+..+.+...++.++.
T Consensus 45 ~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 45 ELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544455666666666655555555555555555554443
No 319
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=34.99 E-value=6.9e+02 Score=28.00 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=61.7
Q ss_pred EEEEEecCCeEEEEEcCCcEEEEeCCCCCccCCCCCcceeccEEeeccCCCCEEEEEeCCCeEEEEEeCCcEEEeCCCCC
Q 001504 285 VHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTH 364 (1065)
Q Consensus 285 V~~Ia~G~~Hs~~LT~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~ 364 (1065)
++...|-++..+-=.+||.+-.|---. +.. +.........+-+-+.-...+.+.-+.+|.|++|-...+
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~---~~~--------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRS---LSC--------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccC---ccc--------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 444455666666667888888886433 111 111222111222233445566777788999999965522
Q ss_pred CCCcCCCCCCcceeeeeeecCCCCCCcEEEEEecCCe--EEEEecCCcEEEEeC
Q 001504 365 NAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWH--TALITSTGQLFTFGD 416 (1065)
Q Consensus 365 ~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~IacG~~h--s~aLt~dG~Vy~wG~ 416 (1065)
. -....+| ..+..|.+++....- .+++++.|++|+|-.
T Consensus 157 ~--------c~~~liP------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 157 S--------CTHELIP------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred c--------cccccCC------CCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 1 1111222 234567777776654 467789999999974
No 320
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=34.92 E-value=1.6e+02 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=26.1
Q ss_pred CceEEEEEc----CCCceEEEEeCCHHHHHHHHHHHH
Q 001504 88 YLSFSLIYN----NGKRSLDLICKDKVEAEVWIAGLK 120 (1065)
Q Consensus 88 ~~~FSiiy~----~~~rtLDLva~~~~ea~~Wv~GL~ 120 (1065)
...|.|..- +..+.|-|.|+++.|.+.|+..|.
T Consensus 83 ~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 83 PNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 567888653 235779999999999999999873
No 321
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=34.80 E-value=46 Score=28.41 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
.+||.-||.||..|..+-.+++.|=+.++.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568888888888888887777776665554
No 322
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.78 E-value=4.4e+02 Score=26.35 Aligned_cols=12 Identities=8% Similarity=0.022 Sum_probs=7.8
Q ss_pred ccccceeccccc
Q 001504 765 LQLKDVVLTTAA 776 (1065)
Q Consensus 765 ~~~~~~~~~~~~ 776 (1065)
..||.+.||..+
T Consensus 23 ~wwKGws~sD~M 34 (126)
T PF07889_consen 23 MWWKGWSFSDLM 34 (126)
T ss_pred eeecCCchhHHH
Confidence 457777776664
No 323
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=34.70 E-value=1.5e+02 Score=30.75 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 001504 830 KKTNELLNQEVLK 842 (1065)
Q Consensus 830 ~~~~~~~~~~~~~ 842 (1065)
|..-++|++|++.
T Consensus 84 K~~~~LL~EELkL 96 (176)
T PF06364_consen 84 KNFVDLLSEELKL 96 (176)
T ss_pred hhHHHHHHHHHHH
Confidence 4445555555543
No 324
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=34.67 E-value=1.7e+02 Score=32.11 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQV 847 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~ 847 (1065)
.++++--+.-|-..|.-||-|+
T Consensus 11 eed~rL~v~~LhHQvlTLqcQL 32 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQL 32 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444443
No 325
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.53 E-value=1.3e+02 Score=32.78 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
+..-|+.+++|..+|++++++...+.+..+.+....+||+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666665555555554
No 326
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.37 E-value=3.3e+02 Score=31.03 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQK 863 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~ 863 (1065)
++..|.+|+..|+.+..-...+|++
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~ 183 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQE 183 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333333
No 327
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.37 E-value=87 Score=29.35 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
.....+.|..++..+.++++.|+.+.+..+.+++++++++.+
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777788888888888888888888888887777653
No 328
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=34.31 E-value=1.2e+02 Score=36.40 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRA---------QVESLRQRCEF-QELELQKSTKKAQEAMAVAAE--ESSKAKAAKDVIKSLTAQ 895 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~---------q~~~~~~~~~~-~~~~~~~~~k~~~~~~~~a~~--e~~~~k~~~e~ik~l~~q 895 (1065)
.+.+...++.+||.+... -+..|+++++. .+.|+++.-+++.. ..-..+ |..-+..++.++..-+.+
T Consensus 310 ~~~~a~~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~r~~~~l~~-~~~~~~~i~~~~~~~~~kllh~P~~~ 388 (414)
T PRK13940 310 ESSKAQKIIVKSLEEYLEKEKAIISNSAIKELFQKADGLVDLSLEKSLAKIRN-GKDAEEIIKRFAYEIKKKVLHYPVVG 388 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888887765 35688888866 67888888887632 111111 122234556666666667
Q ss_pred HHHHHh
Q 001504 896 LKDMAE 901 (1065)
Q Consensus 896 lk~~~~ 901 (1065)
||+++.
T Consensus 389 lk~~~~ 394 (414)
T PRK13940 389 MKEASK 394 (414)
T ss_pred HHHhhc
Confidence 887553
No 329
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.25 E-value=1.2e+02 Score=32.22 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKL------RAQVESLRQRCEFQELELQKSTKKAQEA 871 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~------~~q~~~~~~~~~~~~~~~~~~~k~~~~~ 871 (1065)
...|-..++.|.+.+..| +.+|..|++..+.++.+|..+.++|.++
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~ 55 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEA 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444 3356666666666666666666665553
No 330
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=34.20 E-value=59 Score=24.34 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.4
Q ss_pred cEEEEEecC-CeEEEEecCCcEEEE
Q 001504 391 QVASVTCGP-WHTALITSTGQLFTF 414 (1065)
Q Consensus 391 ~Iv~IacG~-~hs~aLt~dG~Vy~w 414 (1065)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 888999999999863
No 331
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.19 E-value=2.2e+02 Score=34.55 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhcC
Q 001504 889 IKSLTAQLKDMAERL 903 (1065)
Q Consensus 889 ik~l~~qlk~~~~k~ 903 (1065)
|+.|.++++.|..++
T Consensus 106 IkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 106 IEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 332
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=34.19 E-value=72 Score=30.86 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=52.3
Q ss_pred eeeeEEEeCCCCEEEEecCCCC---cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCCHHHHH
Q 001504 37 KFYPFRLSNDETSLIWISSSGE---RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAE 113 (1065)
Q Consensus 37 k~r~f~L~~d~~~l~W~~~~~~---~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~ea~ 113 (1065)
..|+|+|-|+. |-|.....+ .=|.+.+|.+|.+- |.. .+.+.|-.|..++ .+-+=|-|.|+-++.
T Consensus 21 Q~Ry~~LfPNR--LE~~~~~~~~~~eLi~M~~i~~V~~e-----~~~----iK~~~CI~ik~k~-~~k~vlt~~d~i~l~ 88 (116)
T cd01240 21 QTRYFKLYPNR--LELYGESEANKPELITMDQIEDVSVE-----FQQ----IKEENCILLKIRD-EKKIVLTNSDEIELK 88 (116)
T ss_pred HHHHheeCcce--eeecccccccCCcEEEeehhhhcchh-----hee----eccCceEEEEEcC-CceEEEecCCcHHHH
Confidence 45788898985 456433222 22455677666432 332 3668899999987 566889999999999
Q ss_pred HHHHHHHHHH
Q 001504 114 VWIAGLKALI 123 (1065)
Q Consensus 114 ~Wv~GL~~Li 123 (1065)
.|..-|+...
T Consensus 89 qW~~elr~a~ 98 (116)
T cd01240 89 QWKKELRDAH 98 (116)
T ss_pred HHHHHHHHHH
Confidence 9999887554
No 333
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.15 E-value=2.1e+02 Score=33.25 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 881 KAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 881 ~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
..+..++-||....++.||-.-||
T Consensus 69 ~i~~L~~~Ik~r~~~l~DmEa~LP 92 (330)
T PF07851_consen 69 LIEKLEEDIKERRCQLFDMEAFLP 92 (330)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhCC
Confidence 344445556666667777776666
No 334
>PTZ00464 SNF-7-like protein; Provisional
Probab=34.10 E-value=1.2e+02 Score=32.98 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=11.5
Q ss_pred HHHHHHHHHHH---HHHHHHhcCC
Q 001504 884 AAKDVIKSLTA---QLKDMAERLP 904 (1065)
Q Consensus 884 ~~~e~ik~l~~---qlk~~~~k~~ 904 (1065)
..++++.+|.. .||.|-.++.
T Consensus 99 ~~~~vv~amk~g~kaLK~~~k~i~ 122 (211)
T PTZ00464 99 DTKVQVDAMKQAAKTLKKQFKKLN 122 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555555543 6776666554
No 335
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.03 E-value=1.6e+02 Score=26.54 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKST 865 (1065)
Q Consensus 833 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 865 (1065)
...+..|+.+++.|++.|+.+-+.+..|+..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 335566666666666666666666666655544
No 336
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=34.00 E-value=1.2e+03 Score=30.54 Aligned_cols=122 Identities=16% Similarity=0.067 Sum_probs=64.0
Q ss_pred EEecCCeEEEEEcCCcEEEEeCCCCC---ccCCCCCcceeccEEeeccCCCCEEEEEeC-----CCeEEEEEeCCcEEEe
Q 001504 288 IACGVRHAALVTRQGEVFTWGEESGG---RLGHGVGKDIVQPHLLESLTMTSVDFVTCG-----EFHTCAVTMAGELYTW 359 (1065)
Q Consensus 288 Ia~G~~Hs~~LT~dG~Vy~WG~N~~G---qLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hs~aLT~dG~Vy~W 359 (1065)
++....+.+++|+.|++|..-...-- ..+.|. .....+....+.+|+.+.+- ....+++|.+|.+.-.
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~----~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGK----PIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCc----CHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEE
Confidence 44556668899999999998433211 111221 11112333355677766551 2357788899977655
Q ss_pred CCCCCC-CCcCCCCCCcceeeeeeecCCCCCCcEEEEE--ecCCeEEEEecCCcEEEEeCCCCCccC
Q 001504 360 GDGTHN-AGLLGHGTDVSHWIPKRISGPLEGLQVASVT--CGPWHTALITSTGQLFTFGDGTFGVLG 423 (1065)
Q Consensus 360 G~n~~~-~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Ia--cG~~hs~aLt~dG~Vy~wG~N~~GQLG 423 (1065)
-..... ....|. .....-++..++.+. ....+.+++|++|++|.+-....-..|
T Consensus 618 ~l~~~~~~~r~G~----------~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 618 SLTEFSNIRSNGI----------IAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred EhHHhhhhccCCc----------ccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 322110 000110 000011233454443 334468999999999998765543333
No 337
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=34.00 E-value=1.8e+02 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQK 863 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~ 863 (1065)
+|+.+|++|.+.|+.+-...+.+++.
T Consensus 30 ~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 338
>PRK14159 heat shock protein GrpE; Provisional
Probab=33.96 E-value=1.8e+02 Score=30.69 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~ 873 (1065)
-+|+..|++++..|+.+.....++++.+.|+.+.-..
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e 65 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKL 65 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777777776554333
No 339
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.91 E-value=2.1e+02 Score=37.21 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001504 846 QVESLRQR 853 (1065)
Q Consensus 846 q~~~~~~~ 853 (1065)
+++.++++
T Consensus 545 e~~~~~~~ 552 (782)
T PRK00409 545 EAEKLKEE 552 (782)
T ss_pred HHHHHHHH
Confidence 33333333
No 340
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.90 E-value=1.9e+02 Score=31.34 Aligned_cols=76 Identities=22% Similarity=0.362 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHhcCCCCCC
Q 001504 834 ELLNQEVLKLRA--QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA---QLKDMAERLPPGVY 908 (1065)
Q Consensus 834 ~~~~~~~~~~~~--q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~---qlk~~~~k~~~~~~ 908 (1065)
.+...=++-||. ....|++..+....++|+.++.-.+-..--.+=.++-.+..|-+|+|.- ||.+|-.|+|-.+|
T Consensus 115 AlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~ 194 (290)
T COG4026 115 ALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY 194 (290)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 333333444442 3345555555555555555553222211122222334566677888765 89999999985555
Q ss_pred C
Q 001504 909 D 909 (1065)
Q Consensus 909 ~ 909 (1065)
+
T Consensus 195 ~ 195 (290)
T COG4026 195 D 195 (290)
T ss_pred H
Confidence 4
No 341
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=33.86 E-value=2.3e+02 Score=29.38 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKS 864 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 864 (1065)
..+.+.+|.+.|++||+.|....++++.+++.+
T Consensus 83 ~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 83 LEDQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555555555555555555555555444443
No 342
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=33.81 E-value=27 Score=42.30 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=54.1
Q ss_pred eeeeEEEeCCCCEEEE-ecCCC----Ccccccceeeecc-cccCChhHhhhcCCCCCCceEEEEEcCCCceEEEEeCCHH
Q 001504 37 KFYPFRLSNDETSLIW-ISSSG----ERSLKLASVSKII-PGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKV 110 (1065)
Q Consensus 37 k~r~f~L~~d~~~l~W-~~~~~----~~~~~l~~I~eI~-~G~~t~~f~r~~~~~~~~~~FSiiy~~~~rtLDLva~~~~ 110 (1065)
+.|||.|+.. .|.+ +.+.+ ...|++..|+.|+ .|++- ..+. -...|-|+..+ +||=|-|+|+.
T Consensus 755 ~TrYFTLSgA--~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr-----~~rs--lpKAFEIFTAD--~T~ILKaKDeK 823 (851)
T KOG3723|consen 755 KTRYFTLSGA--QLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKR-----RDRS--LPKAFEIFTAD--KTYILKAKDEK 823 (851)
T ss_pred ccceEEecch--hhhcccCCCCCCCCCCCccHHHhhhHHHHHhhh-----hhcc--cchhhheeecC--ceEEeeccccc
Confidence 5678888754 4445 22222 2348888888887 45421 1111 12456677655 78999999999
Q ss_pred HHHHHHHHHHHHHHccCC
Q 001504 111 EAEVWIAGLKALISSGQG 128 (1065)
Q Consensus 111 ea~~Wv~GL~~Li~~~~~ 128 (1065)
-|+.|+.-|+..|++++.
T Consensus 824 NAEEWlqCL~IavAHa~~ 841 (851)
T KOG3723|consen 824 NAEEWLQCLNIAVAHAKE 841 (851)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999976653
No 343
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.71 E-value=2.6e+02 Score=25.14 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 841 LKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 841 ~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
..|.+-+..|+.+.-.||.-|+.+.-.+.|-|.....=..+ ++.|+..+++|-..
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~q-------lr~L~~kl~~~~~~ 58 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQ-------LRLLTEKLKDLQPS 58 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccc
Confidence 45667888999999999999999998888877665543332 44456566555443
No 344
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=33.66 E-value=1e+02 Score=37.14 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 831 KTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 831 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
.+-|-+++|-+-||+|+.+|+-.||.+..|-.+.++
T Consensus 23 etldRIKdEfqflqaqyhslkleceKlA~EKteMqR 58 (705)
T KOG0639|consen 23 ETLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQR 58 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 344566789999999999999999988765444433
No 345
>PRK06746 peptide chain release factor 2; Provisional
Probab=33.51 E-value=2.8e+02 Score=32.12 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHH-hc
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES--SKAKAAKDVIKSLTAQLKDMA-ER 902 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~--~~~k~~~e~ik~l~~qlk~~~-~k 902 (1065)
-++.++.- -|.+|+..|+.-|+.+.+ ++...+.++++..++.+|. +=..-|++-++.|..+|+.+- +.
T Consensus 7 w~d~~~~~-~~~ke~~~l~~~v~~~~~--------~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~le~~~ 77 (326)
T PRK06746 7 WDDQQGAQ-AVINEANALKDMVGKFRQ--------LDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQL 77 (326)
T ss_pred hcCHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444433 445677777776665544 3333444455555553321 113356666777888777665 45
Q ss_pred CCCCCCCC
Q 001504 903 LPPGVYDP 910 (1065)
Q Consensus 903 ~~~~~~~~ 910 (1065)
||.+.++.
T Consensus 78 l~~~~~D~ 85 (326)
T PRK06746 78 LLSDPYDK 85 (326)
T ss_pred ccCCCCcc
Confidence 56676663
No 346
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=33.41 E-value=1.2e+03 Score=30.16 Aligned_cols=120 Identities=10% Similarity=0.089 Sum_probs=66.9
Q ss_pred EEEEEecCCe--EEEEEcCCcEEEEeCCCCCccCCCCC-cceeccEEeeccCCCCEEEEEeCCCeEEEEE--eCCcEEEe
Q 001504 285 VHHIACGVRH--AALVTRQGEVFTWGEESGGRLGHGVG-KDIVQPHLLESLTMTSVDFVTCGEFHTCAVT--MAGELYTW 359 (1065)
Q Consensus 285 V~~Ia~G~~H--s~~LT~dG~Vy~WG~N~~GqLG~g~~-~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT--~dG~Vy~W 359 (1065)
|++.+.|..- ++.+...|.-.++|...-|||+.=.= ...+..++-..+ ..|..++-...-.++.| +||+|-+|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEE
Confidence 5566666443 45556668888899888888875311 011111111011 23555555544444443 68888888
Q ss_pred CCCCCCCCcCCCCCCcceeeeeeecCCCCCCcEEEEEecCCeEEEEecCCcEEEEeCCCC
Q 001504 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTF 419 (1065)
Q Consensus 360 G~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~wG~N~~ 419 (1065)
-... |.+ ..-......+...++++.-.+..+-..-||.|-+|-...|
T Consensus 378 n~~S---gfC----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 378 NTQS---GFC----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccC---ceE----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 5431 110 1111122345566777777777777778999999986554
No 347
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=33.41 E-value=3.6e+02 Score=29.57 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK-AKAAKDVIKSLTAQLKDM 899 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~-~k~~~e~ik~l~~qlk~~ 899 (1065)
++..++.+....++.+..++..++.+|......++. ...+.+.++. -..-.+-|+.|+.+||+.
T Consensus 124 ~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~-lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 124 VLEQELERAEERAEAAESKIKELEEELKSVGNNLKS-LEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555554444442 2222222222 123334466666666654
No 348
>PRK12472 hypothetical protein; Provisional
Probab=33.29 E-value=1.8e+02 Score=35.16 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~ 869 (1065)
..++.|+..+.-..|...|.+.++.|++.-..-+.||....|.|.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~ 249 (508)
T PRK12472 205 AADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALA 249 (508)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888888777777777766666553
No 349
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.20 E-value=94 Score=29.63 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=36.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
..+.+.++..-+.|..++.+|..+++.|..+......+|.+++|
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44567777888888999999999999999999888888888764
No 350
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.17 E-value=1.7e+02 Score=25.21 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 840 VLKLRAQVESLRQRCEFQELELQK 863 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~ 863 (1065)
+..|+.+|..|..+.+.+..+++.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~ 51 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQ 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 351
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=33.07 E-value=2.6e+02 Score=29.30 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hh-HHHHHHHHHHHHHHHHHhcC
Q 001504 846 QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK----AK-AAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 846 q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~----~k-~~~e~ik~l~~qlk~~~~k~ 903 (1065)
++..|+.+.+.+..|++++.+++++-+.....|... .| ..+|-.+.+..+++++-.|+
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki 136 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKI 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666777777777666654443332221 11 34555555666666655554
No 352
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=33.05 E-value=2.3e+02 Score=29.09 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhcC
Q 001504 888 VIKSLTAQLKDMAERL 903 (1065)
Q Consensus 888 ~ik~l~~qlk~~~~k~ 903 (1065)
=++.++.++++..+++
T Consensus 70 ~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 70 NAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3555666777777664
No 353
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.02 E-value=8.6e+02 Score=29.07 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=39.4
Q ss_pred eEEEEecCCceEEEEEEeeeeccccccCCCeEEEecCCCCCCCCCCCCCCcccceEecccC-----CCCEEEEEecCCEE
Q 001504 443 RTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALI-----DYNFHKVACGHSLT 517 (1065)
Q Consensus 443 ~I~~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~-----~~~I~~Ia~G~~ht 517 (1065)
+|..+.-....-++|+. -.+..+..|-.-+. ..|.... ..-|..-..|.+-.
T Consensus 397 ~its~~iS~d~k~~Lvn---------L~~qei~LWDl~e~--------------~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 397 PITSFSISKDGKLALVN---------LQDQEIHLWDLEEN--------------KLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ceeEEEEcCCCcEEEEE---------cccCeeEEeecchh--------------hHHHHhhcccccceEEEeccCCCCcc
Confidence 56666666666666654 45788888865321 1111111 12244445555545
Q ss_pred EEE--ecCCcEEEEeCCC
Q 001504 518 VGL--TTSGHVFTMGSTV 533 (1065)
Q Consensus 518 vaL--T~dG~Vy~wGsN~ 533 (1065)
++. .+|++||.|-.-.
T Consensus 454 fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRIS 471 (519)
T ss_pred eEEecCCCceEEEEEccC
Confidence 555 5789999998643
No 354
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.95 E-value=1.9e+02 Score=35.10 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 001504 884 AAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 884 ~~~e~ik~l~~qlk~~~~k 902 (1065)
++|+.=.-||+++++|-+|
T Consensus 265 ~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 265 AYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 5566666677777776655
No 355
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.80 E-value=1.5e+02 Score=37.95 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=36.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
..+.++..-.-|..|+++||.+++..++++...|.|+|.+.+
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888899999999999999999999999999876655
No 356
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=32.78 E-value=1.4e+03 Score=30.76 Aligned_cols=115 Identities=13% Similarity=-0.037 Sum_probs=57.3
Q ss_pred CeEEEEEcCCcEEEEeCCCCCccCCCCCcceeccEEeeccCCCCEEEEE--eCCCeEEEEEeCCcEEEeCCCCCCCCcCC
Q 001504 293 RHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVT--CGEFHTCAVTMAGELYTWGDGTHNAGLLG 370 (1065)
Q Consensus 293 ~Hs~~LT~dG~Vy~WG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va--~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG 370 (1065)
.-.+.||.+|-|-..-...+..-+.+ +.-+..-.+..|..+. ....+.+++|+.|++|..=.. .+-
T Consensus 517 ~v~v~lS~~GyIKr~~~~~~~~q~~g-------~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy-----~IP 584 (957)
T PRK13979 517 DVVITLSNEGFIKRIPLKSYNRSNSN-------VEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGI-----NIP 584 (957)
T ss_pred ceEEEEecCCEEEEcccccccccccc-------ccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEee-----eCC
Confidence 34568888886655443333222222 0011111223344433 345667888999999976321 221
Q ss_pred CCCCcceeee--eeec-CCCCCCcEEEEEecCC-----eEEEEecCCcEEEEeCCCC
Q 001504 371 HGTDVSHWIP--KRIS-GPLEGLQVASVTCGPW-----HTALITSTGQLFTFGDGTF 419 (1065)
Q Consensus 371 ~g~~~~~~~P--~~V~-~~l~~~~Iv~IacG~~-----hs~aLt~dG~Vy~wG~N~~ 419 (1065)
.+.....-.| ..+. ..+.+.+|+.+.+-.. +.+++|.+|.+.-.-...|
T Consensus 585 e~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef 641 (957)
T PRK13979 585 EFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKF 641 (957)
T ss_pred CCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhc
Confidence 1111111111 1111 0113677888776532 4688899999887754443
No 357
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.76 E-value=34 Score=41.46 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
.|+|++|+.|+++|++|-+.++.+|.+.++
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 347777777777777776666666666666
No 358
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=32.71 E-value=3.1e+02 Score=33.65 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
..++++.-+..+.|+.+|++.-..|....++.+.+|++++|.+..+ .-|-+ +-|-.|..-..|++|+.+.-
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~----q~eL~---~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK----QLELS---ALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh----HHHHH---HHHhHHHHHHHHHHHHHhhc
Confidence 5667777777888888888777777777777777777777754331 11111 23334555555777766543
No 359
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.71 E-value=1e+02 Score=30.42 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=26.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQK 863 (1065)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 863 (1065)
+.+.++|++.-+.|.-+|..|+.|-+.|.++.+.+..+|++
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777766666666555555554
No 360
>PRK04406 hypothetical protein; Provisional
Probab=32.48 E-value=1.1e+02 Score=27.66 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 843 LRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 843 ~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
|.+.+..|+.+.-.||.-|+.+.+-+-+-...... -+.-++.|..||+++...
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~-------L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITK-------MQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccc
Confidence 44555556666666665555555543222211111 112367788899987643
No 361
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=32.39 E-value=1.1e+02 Score=26.95 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
|+..|+.+|+.|+.+.-+.-.+|..+..
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaE 30 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666655544444444433
No 362
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.33 E-value=4.4e+02 Score=24.93 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
.+.++..++-+..-+..|...+..|+.+++....+|...-.++
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l 51 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDEL 51 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666677777777777777766666665444443
No 363
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=32.25 E-value=4.5e+02 Score=29.36 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=25.6
Q ss_pred eeccEEeeccCCCCEEEEEeCCCeEEEE-EeCCcEEEeCCC
Q 001504 323 IVQPHLLESLTMTSVDFVTCGEFHTCAV-TMAGELYTWGDG 362 (1065)
Q Consensus 323 ~~~P~~V~~l~~~~I~~Va~G~~hs~aL-T~dG~Vy~WG~n 362 (1065)
...|+.+..-.+.-=..+-|-+.|+++- ++++.|-.|-.-
T Consensus 133 ~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 133 KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 3455666544332223356888888776 788999999543
No 364
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.23 E-value=57 Score=34.73 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
.++..|++++..|+.++..++.+|+...|-
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~ 145 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKA 145 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666655553
No 365
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.21 E-value=2.2e+02 Score=32.82 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 001504 826 TDSLKKTNELLNQEVLKLRA 845 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~ 845 (1065)
.+.|...-+.|.++...|.+
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~ 170 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDK 170 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 366
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.19 E-value=1.9e+02 Score=29.91 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
..+.+-|+-|.+|+.+|+.+++.|+.+.+.+..+++.++..
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888777777776666654
No 367
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.12 E-value=1.1e+02 Score=27.27 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 844 RAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 844 ~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
.+.+..|+.|.-.|+.-|+.+.+-+-+-...... -+.-++.|..||+++....
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~-------L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAK-------LRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcccc
Confidence 3455555555555555555555433222211111 1223777888999886654
No 368
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=32.10 E-value=62 Score=26.02 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~ 872 (1065)
|.++|..+|.+...+..+....+.++-++++++++-.
T Consensus 2 L~~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~LD~lI 38 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKKGLTDPEVLELSQELDKLI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 7889999999999998888888889988888887643
No 369
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.06 E-value=1.6e+02 Score=30.46 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001504 849 SLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1065)
Q Consensus 849 ~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~ 898 (1065)
.|.+|...-..|.++..+.+.|...--..++.+.|.+.++|-+|...+|.
T Consensus 122 el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~ 171 (181)
T COG4345 122 ELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQ 171 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455555555666666666666555566677778888888888887774
No 370
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.96 E-value=1.9e+02 Score=30.79 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKST 865 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 865 (1065)
.|..|+..|+..+..|....+.++.-++..+
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 371
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.84 E-value=5.3e+02 Score=27.88 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=41.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKK--AQEAMAVAAEESSKAKAA 885 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~--~~~~~~~a~~e~~~~k~~ 885 (1065)
..+..++-.-.|.+|.-+|..||..|+..-+.-...|....|| +.-+-.+|.|=..-+|+.
T Consensus 12 PKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v 74 (227)
T KOG3229|consen 12 PKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAV 74 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4677778888888999888889888877666666666666665 344455566555545443
No 372
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=31.74 E-value=8e+02 Score=27.78 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=12.1
Q ss_pred CeEEEEEeCCcEEEeCCC
Q 001504 345 FHTCAVTMAGELYTWGDG 362 (1065)
Q Consensus 345 ~hs~aLT~dG~Vy~WG~n 362 (1065)
.|++++ -+|+||++|..
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 455544 57999999875
No 373
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.68 E-value=2.6e+02 Score=24.72 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 843 LRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 843 ~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
|.+.+..|+.|.-.|+.-|+.+.+-+-+= -.-|..|..||+.|.+|+-
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Q--------------q~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQ--------------QRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665532221 1126668888888888875
No 374
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.59 E-value=4.2e+02 Score=28.52 Aligned_cols=53 Identities=26% Similarity=0.273 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES 879 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~ 879 (1065)
..++.....+.+|+..|+-+-+.|.++++..+.|-..+.+++..+..-+-..+
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~ 141 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677888888888889999999999998888888887776665544
No 375
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.56 E-value=2.4e+02 Score=31.69 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKS 864 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~ 864 (1065)
||..|.+||+.+-.+.+....++.++
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~ 78 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQS 78 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333333333
No 376
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=31.52 E-value=3.1e+02 Score=25.82 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~ 872 (1065)
+...-+-+.+.+.++..++..|+++-...+.|+.+..++...++
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~m 51 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAM 51 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777788887777777777777655444
No 377
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=31.42 E-value=1.3e+02 Score=38.32 Aligned_cols=97 Identities=16% Similarity=0.301 Sum_probs=56.5
Q ss_pred CeEEEEecC--C--cCeeeeEEEeCCCCEEEEecCCCCcccccceeeecccccCChhHhhhcCCCCCCceEEE--EEc--
Q 001504 25 AQLLKYGRK--G--KPKFYPFRLSNDETSLIWISSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSL--IYN-- 96 (1065)
Q Consensus 25 t~l~K~~~~--~--kpk~r~f~L~~d~~~l~W~~~~~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSi--iy~-- 96 (1065)
-+|.-|+++ | -++.|||.|.. +.|..++.++... ..-|+....|-.+.+=.+=.+.. ..+-|.+ ||+
T Consensus 8 GW~y~~g~~kig~~~~~~Ry~vl~~--~~~~~yK~~P~~~--~~pirs~~id~~~rVed~Gr~~~-~g~~~yvl~~Yn~~ 82 (719)
T PLN00188 8 GWMVRYGRRKIGRSYIHMRYFVLES--RLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTH-HGHMVYVLSVYNKK 82 (719)
T ss_pred eEEEEEcccccccccceeEEEEEec--chhhhcccCCccc--cccceeeccCCCceEeecCceEE-cCceEEEEEEecCC
Confidence 356677554 3 35778888764 4455554433222 33344444455554322211111 1223333 454
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001504 97 NGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1065)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1065)
+..+-|-+-|.+.|||..|+..|+..+.+.
T Consensus 83 ~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 83 EKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred CccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 346789999999999999999999998744
No 378
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.34 E-value=1.8e+02 Score=27.15 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHH
Q 001504 881 KAKAAKDVIKSL 892 (1065)
Q Consensus 881 ~~k~~~e~ik~l 892 (1065)
+-+.|-|-|+++
T Consensus 75 rL~~a~e~Ir~v 86 (89)
T PF13747_consen 75 RLDSAIETIRAV 86 (89)
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 379
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=31.08 E-value=1.4e+02 Score=39.71 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
-.++++++-+...++++..+++.+..++++++...+++.+..++.-..+..+.......+|+++.|..++..+-+.+
T Consensus 563 ~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~ 639 (1317)
T KOG0612|consen 563 GKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETL 639 (1317)
T ss_pred hhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34566677777778888888889999999999888888886666666666666666666677776666555444433
No 380
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.03 E-value=4.4e+02 Score=24.96 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=28.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
...-|.++|+.-..+..+|..-+..|+...+.++.+-+.++.
T Consensus 22 d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~ 63 (99)
T PF10046_consen 22 DYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQP 63 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888777777766666654444433
No 381
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=31.01 E-value=4.3e+02 Score=30.00 Aligned_cols=140 Identities=19% Similarity=0.150 Sum_probs=75.8
Q ss_pred CCCcc--cccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEec---CCeEEEEEcCCc
Q 001504 229 HGSAP--DDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACG---VRHAALVTRQGE 303 (1065)
Q Consensus 229 ~Gs~~--~al~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~d~~~P~~l~~~~~~~V~~Ia~G---~~Hs~~LT~dG~ 303 (1065)
.|+++ .+.+.+|.||.=+.. .+.+|.=+ |+ .-.++.+..| .-|.+++..||.
T Consensus 60 ~G~ap~dvapapdG~VWft~qg--~gaiGhLd---------------P~------tGev~~ypLg~Ga~Phgiv~gpdg~ 116 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQG--TGAIGHLD---------------PA------TGEVETYPLGSGASPHGIVVGPDGS 116 (353)
T ss_pred CCCCccccccCCCCceEEecCc--cccceecC---------------CC------CCceEEEecCCCCCCceEEECCCCC
Confidence 45555 466888999976654 45555433 11 1233444444 357888899999
Q ss_pred EEEEeCC-CCCccCCCCCcceeccEEeeccCCCCEEEEEeCCCeEEEEEeCCcEEEeCCCCCCCCcCCCCCCcceeeeee
Q 001504 304 VFTWGEE-SGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKR 382 (1065)
Q Consensus 304 Vy~WG~N-~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~ 382 (1065)
.|..-.. .-++++........-|.. .+-+-+.-.+.+++..|.||.-|.+- .+|.|..........|..
T Consensus 117 ~Witd~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~i~vfpaP 186 (353)
T COG4257 117 AWITDTGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARNVISVFPAP 186 (353)
T ss_pred eeEecCcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccc-cceecCcccCceeeeccC
Confidence 8887544 223333221111111111 12334556678999999999988762 233332222111111111
Q ss_pred ecCCCCCCcEEEEEecCCeEEEEecCCcEEEE
Q 001504 383 ISGPLEGLQVASVTCGPWHTALITSTGQLFTF 414 (1065)
Q Consensus 383 V~~~l~~~~Iv~IacG~~hs~aLt~dG~Vy~w 414 (1065)
--+.-.-+++|-+|.||.-
T Consensus 187 -------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 -------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred -------------CCCCCcceEECCCCcEEEE
Confidence 1123366888999999975
No 382
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=30.96 E-value=1.6e+02 Score=35.74 Aligned_cols=91 Identities=26% Similarity=0.439 Sum_probs=49.5
Q ss_pred cCCeEEEE-ecCCcCeeeeEEEeCCCCEEEEecCCCCc---ccc-cc-----eeeecccccCChhHhhhcCCCCCCceEE
Q 001504 23 KGAQLLKY-GRKGKPKFYPFRLSNDETSLIWISSSGER---SLK-LA-----SVSKIIPGQRTAVFQRYLRPEKDYLSFS 92 (1065)
Q Consensus 23 ~Gt~l~K~-~~~~kpk~r~f~L~~d~~~l~W~~~~~~~---~~~-l~-----~I~eI~~G~~t~~f~r~~~~~~~~~~FS 92 (1065)
.|-.-+|- +||+|.|. +|.|-..+.+ +..+.+.| .+. |. +|--.+-|+ ++|+.+. +.||.
T Consensus 320 ~GfL~~K~dgkKsWKk~-yf~LR~SGLY--ys~K~tsk~~r~Lq~l~~~~~snVYt~i~~r-----KkyksPT--d~~f~ 389 (622)
T KOG3751|consen 320 QGFLYLKEDGKKSWKKH-YFVLRRSGLY--YSTKGTSKEPRHLQCLADLHSSNVYTGIGGR-----KKYKSPT--DYGFC 389 (622)
T ss_pred cceeeecccccccceeE-EEEEecCcce--EccCCCCCCchhhHHHHhcccCceEEeecch-----hccCCCC--CceEE
Confidence 35555666 88888555 5667666543 32222222 221 22 222222222 1244444 55666
Q ss_pred EEEc---CCCceEEEE-eCCHHHHHHHHHHHHHHH
Q 001504 93 LIYN---NGKRSLDLI-CKDKVEAEVWIAGLKALI 123 (1065)
Q Consensus 93 iiy~---~~~rtLDLv-a~~~~ea~~Wv~GL~~Li 123 (1065)
|--. +..|.|-++ |.|+..+..|+++||.+-
T Consensus 390 ~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 390 IKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred eeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 5442 224788755 567779999999999776
No 383
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=30.88 E-value=1.4e+02 Score=33.61 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
.+..++.++++|+..++.+.+..+.++++.++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 92 (322)
T TIGR01730 61 DYQLALQAALAQLAAAEAQLELAQRSFERAER 92 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666676666666666666666544
No 384
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.84 E-value=3.2e+02 Score=29.12 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~ 872 (1065)
...|+.++..|+.+.+.++.++++++++.+...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666544433
No 385
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=30.68 E-value=2.8e+02 Score=35.36 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---HHHHHHHHHHHHHHHHHhcC
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAK---AAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k---~~~e~ik~l~~qlk~~~~k~ 903 (1065)
+..++-++.|.+++..|++....|+.++.....++|++-+.+..-...-+++...-+ +-++..|.|-+|+-||-..+
T Consensus 237 ~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 237 STIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 334444566677777777766677777777777777666654443222222222222 22355666666777765554
No 386
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=30.56 E-value=1.3e+02 Score=22.64 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 840 VLKLRAQVESLRQRCEFQELELQKST 865 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~~~ 865 (1065)
-.+|-++.+.|+.+.|++..+|+.+.
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677777777777776666553
No 387
>PRK14127 cell division protein GpsB; Provisional
Probab=30.38 E-value=1.4e+02 Score=29.06 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
++....-+.+.+++..|..++..|+++-+.++.+|..++.++..
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44555556667777788888888888888888888888776653
No 388
>PF15408 PH_7: Pleckstrin homology domain
Probab=30.37 E-value=78 Score=29.19 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=52.3
Q ss_pred HHHhcCCeEEEEecCCcCeeeeEEEeCCCCEEEEecCCCCcccccceeeecccccCChhHhhhcCCCCCCceEE-EEEcC
Q 001504 19 IALKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFS-LIYNN 97 (1065)
Q Consensus 19 ~~L~~Gt~l~K~~~~~kpk~r~f~L~~d~~~l~W~~~~~~~~~~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FS-iiy~~ 97 (1065)
-+|..|-+|.-+--+|-|+.+.|.|+.....+ ++.+-++.. +..--..|- |.|+.
T Consensus 16 F~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~-----------Pm~~~~~A~-------------~N~Gi~A~G~L~~~~ 71 (104)
T PF15408_consen 16 FVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSH-----------PMVNFSQAV-------------PNLGINAFGFLMYSP 71 (104)
T ss_pred HHhhhhceeEEecccCCceeeeeehhhhhhhc-----------ccccccccC-------------CCCCeeEEEEEEecC
Confidence 35677888888888999999999987543322 222221111 111112344 45676
Q ss_pred CCceEEEEeCCHHHHHHHHHHHH
Q 001504 98 GKRSLDLICKDKVEAEVWIAGLK 120 (1065)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~ 120 (1065)
..+-|-+.|++++.++.|+..|+
T Consensus 72 ~~~~~~~FA~S~~~~~~Wi~~mN 94 (104)
T PF15408_consen 72 SRRHVQCFASSKKVCQSWIQVMN 94 (104)
T ss_pred CcchhhhhhhHHHHHHHHHHHhc
Confidence 77889999999999999999875
No 389
>PRK04325 hypothetical protein; Provisional
Probab=30.25 E-value=1.3e+02 Score=27.12 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
+.+-|..|..++.=+..-.+.++..|-+-+|++..- +.-++.|+.+|+++....
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L--------------~~ql~~L~~rl~~~~~~~ 60 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLL--------------QAQLRLLYQQMRDANPDA 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcccc
Confidence 445566666666555555555555555555544221 112566888888876554
No 390
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.11 E-value=3.7e+02 Score=25.81 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
+..+..+||.|++.+.++....+.++++...-+++
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777766654433
No 391
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.00 E-value=2.4e+02 Score=30.00 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=18.6
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 821 FSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCE 855 (1065)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 855 (1065)
|+......++..-+-|.+|+.++++++..|+.+.+
T Consensus 59 Fps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 59 FPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555566665555555554443
No 392
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.97 E-value=2.9e+02 Score=30.32 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
..+...-+.+.+++..++++++.|+.+...++.+|..+..+...
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677788888888888888888888888888775443
No 393
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=29.94 E-value=1.8e+02 Score=26.93 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 874 (1065)
-|..||..|.++|..|.+..+.....++..+.+++.|...
T Consensus 28 qLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~R 67 (85)
T PRK09973 28 QLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTR 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888888888888888888888887777766665543
No 394
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.87 E-value=1.5e+03 Score=30.30 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=28.0
Q ss_pred ccccccccc---CCCCCEEEEEecCCe--EEEEEcCCcEEEEeC
Q 001504 271 VLLPRPLES---NVVLDVHHIACGVRH--AALVTRQGEVFTWGE 309 (1065)
Q Consensus 271 ~~~P~~l~~---~~~~~V~~Ia~G~~H--s~~LT~dG~Vy~WG~ 309 (1065)
..+|-|+-. .....|.+|+....+ .++++.+|.|+.|-.
T Consensus 412 a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 412 AVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred cCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 345555422 334579999999888 899999998777753
No 395
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.75 E-value=1.1e+02 Score=27.05 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
.++.+++.|+..|+++.+.+..+.++++++++.
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888877777777777776655
No 396
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.69 E-value=2.6e+02 Score=34.85 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=12.3
Q ss_pred eeEEEEcCCcc-eeeecCCeEEE
Q 001504 559 VEEIACGAYHV-AVLTSRNEVYT 580 (1065)
Q Consensus 559 V~~Ia~G~~Hs-~aLT~dG~Vyt 580 (1065)
|+.|--|-... ++|+-||+|.-
T Consensus 246 IVGIDPGiTtgiAvldldGevl~ 268 (652)
T COG2433 246 IVGIDPGITTGIAVLDLDGEVLD 268 (652)
T ss_pred EEEeCCCceeeEEEEecCCcEEe
Confidence 55555565443 45566776644
No 397
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=29.50 E-value=1.6e+02 Score=30.04 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 842 KLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 842 ~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
+|+.+...|.++....+.++.++.+++++
T Consensus 5 ~Lk~~~~~L~~~~~~le~~i~~~~~~~k~ 33 (171)
T PF03357_consen 5 KLKKTIRRLEKQIKRLEKKIKKLEKKAKK 33 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 398
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=29.50 E-value=2.1e+02 Score=29.12 Aligned_cols=39 Identities=38% Similarity=0.464 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhhhHH
Q 001504 846 QVESLRQRCEFQELEL-------QKSTKKAQEAMAVAAEESSKAKAA 885 (1065)
Q Consensus 846 q~~~~~~~~~~~~~~~-------~~~~k~~~~~~~~a~~e~~~~k~~ 885 (1065)
+|+.++.+.+..+.|| |+..|..++|.. |-+|..|-|+.
T Consensus 85 Ev~~vRkkID~vNreLkpl~~~cqKKEkEykeale-a~nEknkeK~~ 130 (159)
T PF04949_consen 85 EVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALE-AFNEKNKEKAQ 130 (159)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444444444 223333344332 55667776654
No 399
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.25 E-value=1.9e+02 Score=37.04 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001504 849 SLRQRCEFQELELQKST 865 (1065)
Q Consensus 849 ~~~~~~~~~~~~~~~~~ 865 (1065)
.|++++|+++.+++.+.
T Consensus 464 qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 464 QLRQENEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555554444443
No 400
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=29.18 E-value=2.8e+02 Score=31.45 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 001504 886 KDVIKSLTAQLKDMAERLPP 905 (1065)
Q Consensus 886 ~e~ik~l~~qlk~~~~k~~~ 905 (1065)
++-+..|+.++.+|..||..
T Consensus 234 ~~~~~~~~~~f~~L~~~L~~ 253 (276)
T PF05929_consen 234 KEQHEALTEDFAALKEKLSS 253 (276)
T ss_pred hhHHHHHHHHHHHHHHHhhC
Confidence 34556788999999999974
No 401
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=29.18 E-value=5.2e+02 Score=26.86 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
+..++-.+.|.+|+..++.+|...-.+.+.++.+-++..++|
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL 64 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRL 64 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566777777777766666666666666555555555
No 402
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=29.14 E-value=5.3e+02 Score=32.47 Aligned_cols=10 Identities=30% Similarity=0.159 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 001504 837 NQEVLKLRAQ 846 (1065)
Q Consensus 837 ~~~~~~~~~q 846 (1065)
.+|-.++|.|
T Consensus 256 meEreK~R~e 265 (811)
T KOG4364|consen 256 MEEREKERKE 265 (811)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 403
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.13 E-value=2.6e+02 Score=32.43 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 001504 884 AAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 884 ~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
..++.|+.|..++|+....+-
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHH
Confidence 356667777777777666654
No 404
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=28.98 E-value=2.6e+02 Score=37.77 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=2.9
Q ss_pred eecCCeE
Q 001504 572 LTSRNEV 578 (1065)
Q Consensus 572 LT~dG~V 578 (1065)
+|-+|.|
T Consensus 642 vTldG~~ 648 (1164)
T TIGR02169 642 VTLEGEL 648 (1164)
T ss_pred EEeCcee
Confidence 3444443
No 405
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=28.97 E-value=96 Score=23.18 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCEEEEEeCC-CeEEEEEeCCcEEEe
Q 001504 335 TSVDFVTCGE-FHTCAVTMAGELYTW 359 (1065)
Q Consensus 335 ~~I~~Va~G~-~hs~aLT~dG~Vy~W 359 (1065)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4789999999 888899999999864
No 406
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.95 E-value=1.9e+02 Score=31.28 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=39.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
..++....|.+|.+|+..|.+|+.++.+--+.+..-+|+.+. +.+ + . -- ++--...|++|+..+|
T Consensus 49 ~~~~q~~~~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~-~~~----~-q-~~--------r~~~s~~le~L~~~lP 113 (206)
T COG3166 49 QIAEQQQRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQV-IEQ----L-Q-QK--------RAGWSVLLEQLANLLP 113 (206)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHH----H-H-cc--------cchHHHHHHHHHHhCC
Confidence 467778889999999999888655444332223333333222 011 1 0 00 0112337899999999
Q ss_pred CCCC
Q 001504 905 PGVY 908 (1065)
Q Consensus 905 ~~~~ 908 (1065)
.++|
T Consensus 114 ~~v~ 117 (206)
T COG3166 114 ESVW 117 (206)
T ss_pred CceE
Confidence 8886
No 407
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.90 E-value=1.4e+02 Score=29.09 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 833 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
......|+.+|++++..|+.+....+.+|+.+.+
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666665544
No 408
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=28.87 E-value=1.8e+02 Score=34.90 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH---------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQV---------ESLRQRC-EFQELELQKSTKKAQEAMAVAAEESSK--AKAAKDVIKSLTA 894 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~---------~~~~~~~-~~~~~~~~~~~k~~~~~~~~a~~e~~~--~k~~~e~ik~l~~ 894 (1065)
+...+.+.++.+|+.++-... ..|.++. ..++.|+++..+++.. ...+.++-.+ +...+.++...|.
T Consensus 310 ~~~~~ae~iIeee~~~~~~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l~~-~~~~~evl~~~~~si~nk~L~~pt~ 388 (414)
T COG0373 310 EEAAKAEAIIEEELAEFMEWLKKLEVVPTIRALREQAEDVREEELEKALKKLPN-GEDEEEVLEKLARSLVNKLLHAPTV 388 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHHhhhHHH
Confidence 344455667777777766533 3444444 4678899999998853 2222222222 3467778888888
Q ss_pred HHHHHH
Q 001504 895 QLKDMA 900 (1065)
Q Consensus 895 qlk~~~ 900 (1065)
+||+|+
T Consensus 389 ~lk~~a 394 (414)
T COG0373 389 RLKEAA 394 (414)
T ss_pred HHHHHH
Confidence 999998
No 409
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=28.77 E-value=3.7e+02 Score=31.63 Aligned_cols=51 Identities=24% Similarity=0.441 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHhc-----CCCCCCCCCC
Q 001504 862 QKSTKKAQEAMAVAAE-ESSKAKAAKDVIKSLTAQLKDMAER-----LPPGVYDPEN 912 (1065)
Q Consensus 862 ~~~~k~~~~~~~~a~~-e~~~~k~~~e~ik~l~~qlk~~~~k-----~~~~~~~~~~ 912 (1065)
++..+.++++..++.+ +..=..-|.+-++.|..+|++|-.+ ||.+.++...
T Consensus 56 ~~~~~~~~~~~el~~~~D~e~~~~a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D~~~ 112 (360)
T TIGR00019 56 QQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEKN 112 (360)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCC
Confidence 3334444555555432 1112334555567777777777653 7888877443
No 410
>PRK14149 heat shock protein GrpE; Provisional
Probab=28.64 E-value=2.5e+02 Score=30.02 Aligned_cols=32 Identities=3% Similarity=0.090 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
.+..|+++++.|+.+....-++++.+.|.++.
T Consensus 44 ~~~~l~~e~~elkd~~lR~~AefEN~rKR~~k 75 (191)
T PRK14149 44 IKEDFELKYKEMHEKYLRVHADFENVKKRLER 75 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666665443
No 411
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.61 E-value=3.1e+02 Score=29.57 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001504 846 QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESS 880 (1065)
Q Consensus 846 q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~ 880 (1065)
+...|+++.+..+.++++..++++.|...-.|+-+
T Consensus 52 ~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLA 86 (221)
T PF04012_consen 52 NQKRLERKLDEAEEEAEKWEKQAELALAAGREDLA 86 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44578888888888899999988887654444433
No 412
>PRK04406 hypothetical protein; Provisional
Probab=28.48 E-value=2.6e+02 Score=25.25 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhcC
Q 001504 889 IKSLTAQLKDMAERL 903 (1065)
Q Consensus 889 ik~l~~qlk~~~~k~ 903 (1065)
|-.|+.||+.|.+++
T Consensus 41 I~~L~~ql~~L~~rl 55 (75)
T PRK04406 41 ITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555554444
No 413
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.47 E-value=2.2e+02 Score=26.20 Aligned_cols=38 Identities=34% Similarity=0.354 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
-+..++-|.+|+..||..+..|..+.+....|-.++..
T Consensus 14 ~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~ 51 (80)
T PF10224_consen 14 EKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLES 51 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788889999999888887776666655555544
No 414
>PLN03188 kinesin-12 family protein; Provisional
Probab=28.43 E-value=2.6e+02 Score=37.79 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhh---hhHHHHHHHHHHHHHH
Q 001504 846 QVESLRQRCEFQELELQKSTKK--AQEAMAVAAEESSK---AKAAKDVIKSLTAQLK 897 (1065)
Q Consensus 846 q~~~~~~~~~~~~~~~~~~~k~--~~~~~~~a~~e~~~---~k~~~e~ik~l~~qlk 897 (1065)
..+-|+|-+++||.-+|.+.|+ ++|.+.-++..|+| .-|-.-||++|+++|-
T Consensus 1109 har~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s 1165 (1320)
T PLN03188 1109 HARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEIS 1165 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 3456778888888888887765 78888777766666 2245578888888644
No 415
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.43 E-value=3.1e+02 Score=34.52 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 874 (1065)
-.+|+..|+.|++.|..+++..+.++..++.++++....
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e 364 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEE 364 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777777777766654433
No 416
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=28.43 E-value=2.6e+02 Score=25.57 Aligned_cols=16 Identities=13% Similarity=0.472 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001504 884 AAKDVIKSLTAQLKDM 899 (1065)
Q Consensus 884 ~~~e~ik~l~~qlk~~ 899 (1065)
..+..+.+|+..++++
T Consensus 87 i~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 87 IRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555543
No 417
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=28.23 E-value=5.6e+02 Score=27.63 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRC 854 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~ 854 (1065)
|..+++.+.+.+..+.
T Consensus 95 ~Ae~~k~eAe~~~~~y 110 (204)
T PRK09174 95 QAARLKQEADAAVAAY 110 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 418
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.18 E-value=3.4e+02 Score=35.23 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001504 846 QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLK 897 (1065)
Q Consensus 846 q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk 897 (1065)
|++.++.+.+..+..|..++.+++-+-.....=...-++.++..++|..|++
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555555555555555555555443332222111223345555555555433
No 419
>PRK00846 hypothetical protein; Provisional
Probab=28.12 E-value=1.5e+02 Score=27.03 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQ 862 (1065)
Q Consensus 830 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 862 (1065)
..+-+-||+.|.+.+.++..|+++.+.+-.+|+
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777766555544443
No 420
>PRK14160 heat shock protein GrpE; Provisional
Probab=28.00 E-value=2.7e+02 Score=30.29 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
+..|+.++..|+++.+.++.++..++.++.- ..|.-|--|.+++||.-.....-+..++..|-
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR--~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LL 118 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLR--TVAEYDNYRKRTAKEKEGIYSDACEDVLKELL 118 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666655555555555443322 23344445555666655555555555554443
No 421
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.98 E-value=3.1e+02 Score=31.89 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 001504 838 QEVLKLRAQVE 848 (1065)
Q Consensus 838 ~~~~~~~~q~~ 848 (1065)
++|..|+.++.
T Consensus 15 ~~V~~m~~~L~ 25 (344)
T PF12777_consen 15 EQVEEMQEELE 25 (344)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 422
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.92 E-value=17 Score=35.74 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKS 864 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 864 (1065)
....-+.|..++..|..|+..|+++.+.++.+|..+
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333444555566666666666666655555554444
No 423
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.89 E-value=1.7e+02 Score=34.99 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQE 858 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 858 (1065)
+.++.-+.|.+++.+|+.+++.|+.+.+...
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3566667788888888888888887765544
No 424
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.86 E-value=4.5e+02 Score=23.62 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 845 AQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 845 ~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
+.|..|+.+....+.++..+.+++.+
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554444
No 425
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=27.86 E-value=1.8e+02 Score=27.56 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHHHHHHHHHHh
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEE-----SSKAKAAKDVIKSLTAQLKDMAE 901 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e-----~~~~k~~~e~ik~l~~qlk~~~~ 901 (1065)
.+|+.--....+|-.-||--+..|..+-+....||+|++-+..+.-..+.-+ +.+.-..++-+|+.-.|+.++..
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~ 83 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSG 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhh
Confidence 4566666677889999999999999999999999999998764332222211 22234567789998889999998
Q ss_pred cCCC
Q 001504 902 RLPP 905 (1065)
Q Consensus 902 k~~~ 905 (1065)
|+..
T Consensus 84 kv~e 87 (96)
T PF11365_consen 84 KVME 87 (96)
T ss_pred HHHH
Confidence 8763
No 426
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=27.66 E-value=2.4e+02 Score=24.85 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELEL 861 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 861 (1065)
|+..|..|.+++..++++-..|.+|-+.-...|
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433333
No 427
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=27.65 E-value=2.4e+02 Score=30.18 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
....-|.+||.|+..|.++-..++.+|++...
T Consensus 24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~ 55 (191)
T PTZ00446 24 EIYKAILKNREAIDALEKKQVQVEKKIKQLEI 55 (191)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554444
No 428
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=27.60 E-value=4.1e+02 Score=30.53 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=16.6
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELL---NQEVLKLRAQVESLRQRCE 855 (1065)
Q Consensus 827 ~~~~~~~~~~---~~~~~~~~~q~~~~~~~~~ 855 (1065)
+...++++.| +.+|..|+.+|++|+.+.+
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443 4466777777777776654
No 429
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=27.47 E-value=3.1e+02 Score=31.06 Aligned_cols=139 Identities=20% Similarity=0.238 Sum_probs=72.7
Q ss_pred CCCeEEEEEeCCcEEEeCCCCCCCCcCCCCCCcceeeeeeecCCCCCCcEEEEEecC---CeEEEEecCCcEEEEeCC-C
Q 001504 343 GEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP---WHTALITSTGQLFTFGDG-T 418 (1065)
Q Consensus 343 G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~IacG~---~hs~aLt~dG~Vy~wG~N-~ 418 (1065)
+.-|-++...||.||.-+... +.+|+-+... -+++.+..|. -|.+++..||..|..-.+ .
T Consensus 62 ~ap~dvapapdG~VWft~qg~---gaiGhLdP~t-------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~a 125 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT---GAIGHLDPAT-------------GEVETYPLGSGASPHGIVVGPDGSAWITDTGLA 125 (353)
T ss_pred CCccccccCCCCceEEecCcc---ccceecCCCC-------------CceEEEecCCCCCCceEEECCCCCeeEecCcce
Confidence 456677888999999876653 4455432211 1233333332 288888889988877543 2
Q ss_pred CCccCCCCCCCcccceeecccccceEEEEecCCceEEEEEEeeeeccccccCCCeEEEecCC-CCCCCCCCCCCCcccce
Q 001504 419 FGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDG-DKNRLGHGDKEPRLKPT 497 (1065)
Q Consensus 419 ~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~ht~aL~ev~~~~s~~~t~~G~Ly~WG~n-~~GQLG~g~~~~~~~P~ 497 (1065)
.+.++-.+......|.. .+.+-+.-.+.++ +..|.||--|.+ .+|+|.-........|.
T Consensus 126 I~R~dpkt~evt~f~lp---------~~~a~~nlet~vf-----------D~~G~lWFt~q~G~yGrLdPa~~~i~vfpa 185 (353)
T COG4257 126 IGRLDPKTLEVTRFPLP---------LEHADANLETAVF-----------DPWGNLWFTGQIGAYGRLDPARNVISVFPA 185 (353)
T ss_pred eEEecCcccceEEeecc---------cccCCCcccceee-----------CCCccEEEeeccccceecCcccCceeeecc
Confidence 22222211111111111 1222333445555 458999988863 34444221111111111
Q ss_pred EecccCCCCEEEEEecCCEEEEEecCCcEEEE
Q 001504 498 CVPALIDYNFHKVACGHSLTVGLTTSGHVFTM 529 (1065)
Q Consensus 498 ~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~w 529 (1065)
. -.+.-+.++.|-+|+||.-
T Consensus 186 P------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 186 P------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred C------------CCCCCcceEECCCCcEEEE
Confidence 1 1345567889999999976
No 430
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.45 E-value=2e+02 Score=32.04 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=18.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQE 858 (1065)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 858 (1065)
+-.|-+|..|.-|.+|+.+++.++..|+++.+.+.
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555554444333
No 431
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=27.30 E-value=4e+02 Score=32.24 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ--------------EAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~--------------~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
..|+++|+.-.+...++|+..+.|+.+++..|. .|-.....|-..+|+|+.=...|..|++-+++-
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 569999999999999999999999988876543 333334445555666665455555555544444
Q ss_pred CC
Q 001504 903 LP 904 (1065)
Q Consensus 903 ~~ 904 (1065)
|-
T Consensus 107 l~ 108 (604)
T KOG3564|consen 107 LK 108 (604)
T ss_pred Hh
Confidence 43
No 432
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=27.23 E-value=6e+02 Score=26.43 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 001504 840 VLKLRAQVESLRQR 853 (1065)
Q Consensus 840 ~~~~~~q~~~~~~~ 853 (1065)
..+++.|.+.+..+
T Consensus 61 Ae~~~~eA~~~~~e 74 (175)
T PRK14472 61 AHSAKDEAEAILRK 74 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344443333
No 433
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=27.20 E-value=2.7e+02 Score=31.77 Aligned_cols=16 Identities=50% Similarity=0.451 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhhhhhh
Q 001504 868 AQEAMAVAAEESSKAK 883 (1065)
Q Consensus 868 ~~~~~~~a~~e~~~~k 883 (1065)
.+++..-+.+|+.|.|
T Consensus 149 aE~a~aka~aEA~k~K 164 (387)
T COG3064 149 AEAAKAKAAAEAAKLK 164 (387)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444345555565544
No 434
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=27.18 E-value=3.9e+02 Score=35.09 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=54.5
Q ss_pred cchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 001504 823 KSITDSLKKTNELLNQEV-LKLRAQVESLRQRCEFQ-ELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMA 900 (1065)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~~~~~~-~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~ 900 (1065)
..+....+.-.++|.|-. ...+||.+..+++.+.| +++.-+-++.++|+-.++.||..+. --++.-...--+++.+.
T Consensus 806 ~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r-~~l~~qr~e~~e~tk~~ 884 (1018)
T KOG2002|consen 806 TVIAQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARR-EKLEKQREEYRERTKEI 884 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345666777788887754 45667888888887767 4556666777888888888776653 22233333333677788
Q ss_pred hcCC
Q 001504 901 ERLP 904 (1065)
Q Consensus 901 ~k~~ 904 (1065)
+++|
T Consensus 885 ~~~~ 888 (1018)
T KOG2002|consen 885 LKLP 888 (1018)
T ss_pred Hhcc
Confidence 8888
No 435
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.13 E-value=3.8e+02 Score=31.60 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 860 ELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 860 ~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
+++.+-++.+.+-.--.+-..+.+.+-+-|..+|.+|.++.++|-
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELE 311 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333333343333334445566777778888888887777763
No 436
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.02 E-value=5.2e+02 Score=26.85 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=43.1
Q ss_pred hhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 826 TDSLKKTNE---LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 826 ~~~~~~~~~---~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
.++.|.+-+ -|.-++.-+|++...|+++-+.++..|..+..-++.|-.++. .-.. ++.-|+..|++|..+
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~s----qi~v---vl~yL~~dl~~v~~~ 148 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVS----QIGV---VLNYLSGDLQQVSEQ 148 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHhhHHHHHHH
Confidence 444444443 334466677778888888777777666666665555544443 3333 355577777777766
Q ss_pred C
Q 001504 903 L 903 (1065)
Q Consensus 903 ~ 903 (1065)
+
T Consensus 149 ~ 149 (159)
T PF05384_consen 149 I 149 (159)
T ss_pred H
Confidence 5
No 437
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=26.96 E-value=2.1e+02 Score=33.88 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhcC
Q 001504 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK-AKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~-~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
.++++|.. -|++-|++||.....|.+- +.=|++.+|-..|.-|+.| +-.+++.+|.+...+.+++.+.
T Consensus 4 k~E~~ksk-E~~enik~l~~~~~~~~es---------ea~k~ar~~y~~~~~~~~~~s~~~~~~l~~~~~~v~~~~~~~ 72 (378)
T TIGR00984 4 RDELQKSQ-ELQESIKQLQDRSGKLNES---------DALKKARKAYEKAESGTLKSSEVVGKTLGKLGDTMKKMAHKA 72 (378)
T ss_pred HHHHHhhH-HHHHHHHHHHHHHhhhhhh---------HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555443 5677777777765555432 1112334444444333322 2234444444444444444443
No 438
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=26.92 E-value=3.7e+02 Score=30.70 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 830 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
..--+-||.+|..|++++.+|+.+......+++.+..+-.+..+-+.+
T Consensus 40 ~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 40 AEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456777888888888888888888888888888776666555443
No 439
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=26.89 E-value=4.4e+02 Score=31.37 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-------HHHHHHhc
Q 001504 831 KTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA-------QLKDMAER 902 (1065)
Q Consensus 831 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~-------qlk~~~~k 902 (1065)
+.-..|..+...|+++-+.++.+...+|.||+++++....-.+--..|-+-+|.-.+=+.-+.+ +++++.++
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q 105 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQ 105 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 440
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.85 E-value=2.4e+02 Score=38.72 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 831 KTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1065)
Q Consensus 831 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~ 872 (1065)
...+-|.+++.++..++..+..+.+.++.+|+...++++++-
T Consensus 600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~ 641 (1201)
T PF12128_consen 600 ASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELK 641 (1201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666555555555555555555555544433
No 441
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=26.85 E-value=1.4e+02 Score=30.00 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~ 868 (1065)
+=|-+++|...|++|..+|+-.|+....|-.+.++..
T Consensus 24 s~drIKeEf~~lqaq~hslk~E~eKla~EK~emqrhy 60 (135)
T PF03920_consen 24 SCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHY 60 (135)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhhcccchHHHHH
Confidence 3445678899999999999999999877666666553
No 442
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=26.74 E-value=3.5e+02 Score=29.39 Aligned_cols=49 Identities=10% Similarity=0.195 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001504 831 KTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK 881 (1065)
Q Consensus 831 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~ 881 (1065)
..-+.|..++.+++.+|..|+.+.+.++.+|+..+. +.....|+...++
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~--k~~~l~ar~~~A~ 147 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARA--RQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 344455666666666667777766666666666644 4445555554444
No 443
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=26.67 E-value=2.1e+02 Score=27.91 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=25.7
Q ss_pred CCCceEEEEEcCCCceEEEEeCCHHHHHHHHHHHHHH
Q 001504 86 KDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKAL 122 (1065)
Q Consensus 86 ~~~~~FSiiy~~~~rtLDLva~~~~ea~~Wv~GL~~L 122 (1065)
+-...|-|...++ ...=|.|.|.+|++.||..|++.
T Consensus 82 Kr~~VFrL~~~dg-~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 82 KRKNVFRLRTADG-SEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp TCSSEEEEE-TTS--EEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCC-CEEEEECCCHHHHHHHHHHHhhh
Confidence 3467888887653 44558999999999999999863
No 444
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=26.65 E-value=94 Score=34.24 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~ 877 (1065)
-|-++|..+++-|=-|.++.+..+.+||+++|-++......++
T Consensus 268 eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d 310 (330)
T KOG2991|consen 268 ELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGD 310 (330)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445666666666678888888888888888765544444333
No 445
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=26.59 E-value=72 Score=29.49 Aligned_cols=61 Identities=23% Similarity=0.248 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
|++.+.+|++|++....--+.....|+.+..+++.+... .++... -=.+|..++..+++.+
T Consensus 2 L~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L~~-~~~~~~------~~~~l~d~l~~av~~F 62 (85)
T PF14357_consen 2 LQELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQLAE-EDEAEA------EDESLVDRLNEAVERF 62 (85)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhc-CCcccc------cchhHHHHHHHHHHHH
Confidence 456667777766643222223334444445545544444 111111 1134666666666665
No 446
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=26.51 E-value=5.9e+02 Score=24.54 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 874 (1065)
.++.+.+|+++.+.+.+..++++..++++..++++.-.+
T Consensus 23 qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~ 61 (110)
T PF10828_consen 23 QSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQA 61 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888887776654333
No 447
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.31 E-value=2.6e+02 Score=34.89 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred cchhhhhHHHHHHH--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001504 823 KSITDSLKKTNELL--NQEVLKLRAQVESLRQR-------CEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 823 ~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~~-------~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~ 893 (1065)
+......++.-+-| .+|+..++.+|+.|+++ ..+...|+++++++++..-..++.-...-+.+++.++...
T Consensus 174 k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~ 253 (555)
T TIGR03545 174 KAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADL 253 (555)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHhc
Q 001504 894 AQLKDMAER 902 (1065)
Q Consensus 894 ~qlk~~~~k 902 (1065)
++||.+..+
T Consensus 254 ~~lk~ap~~ 262 (555)
T TIGR03545 254 AELKKAPQN 262 (555)
T ss_pred HHHHhccHh
No 448
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=26.29 E-value=3.6e+02 Score=28.14 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~ 871 (1065)
+-.+|+.++..|..+.+.++.||.++.++...+
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~ 75 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKT 75 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666554333
No 449
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=26.29 E-value=1.6e+02 Score=24.51 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQELELQKST 865 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~~~~~~~~~ 865 (1065)
++..|..+|..|+.+.+.+..+|..++
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444443
No 450
>PRK02119 hypothetical protein; Provisional
Probab=26.24 E-value=1.7e+02 Score=26.35 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k 902 (1065)
|.+-+..|..++.=+..-.+.++..|-+-+|++.. -+.-++.|..||+++...
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~--------------L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDK--------------MQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhccc
Confidence 44455555555555555555555544444444322 111255577788887644
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.13 E-value=4.7e+02 Score=32.19 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001504 833 NELLNQEVLKLRAQ---------------VESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLK 897 (1065)
Q Consensus 833 ~~~~~~~~~~~~~q---------------~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk 897 (1065)
-++|++-|+-+|+| +..|+.+-++|-++|+.+.++.+-.-.+|..=+.+-..|+|==.+|...+|
T Consensus 561 ~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~ 640 (741)
T KOG4460|consen 561 LQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMK 640 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34666666655554 567777878888888888777666555555444444455555566666677
Q ss_pred HHHhc
Q 001504 898 DMAER 902 (1065)
Q Consensus 898 ~~~~k 902 (1065)
.+-..
T Consensus 641 ~L~~~ 645 (741)
T KOG4460|consen 641 KLLHS 645 (741)
T ss_pred HHHhc
Confidence 66544
No 452
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=26.06 E-value=5.6e+02 Score=29.43 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhhhhh----------HHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKK------AQEAMAVAAEESSKAK----------AAKDVIK 890 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~------~~~~~~~a~~e~~~~k----------~~~e~ik 890 (1065)
+.|..-|--|.++...|-.|.+.+.+..+.+...++ +.++ ++-+...|..|....+ -||..|+
T Consensus 133 ~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e 211 (391)
T KOG1850|consen 133 DKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLE 211 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q ss_pred HHHH---HHHH
Q 001504 891 SLTA---QLKD 898 (1065)
Q Consensus 891 ~l~~---qlk~ 898 (1065)
.++. |||+
T Consensus 212 ~~~~~e~qlK~ 222 (391)
T KOG1850|consen 212 EMKQVEGQLKE 222 (391)
T ss_pred HHHHHHHHHHH
No 453
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.94 E-value=3.9e+02 Score=32.06 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 001504 884 AAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 884 ~~~e~ik~l~~qlk~~~~k~ 903 (1065)
+--|-|--|..||+|+.--|
T Consensus 432 s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHhHheeh
Confidence 33355666666777766555
No 454
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=25.93 E-value=3.3e+02 Score=29.18 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE----ESSKAKAAKDVIKSLTAQLKD 898 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~----e~~~~k~~~e~ik~l~~qlk~ 898 (1065)
+|-.+++..++.|+-+-+.++++|-..++|++.+--..+| |..|.|..-+++|-.-.|||.
T Consensus 185 ~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKa 249 (259)
T KOG4001|consen 185 NEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKA 249 (259)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677778777777777777777765544333322 234556666777776668886
No 455
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=25.57 E-value=4.6e+02 Score=26.51 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVA 875 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a 875 (1065)
..+++.++.+|+..|....+..+..-.++..++..+..++
T Consensus 38 ~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l 77 (135)
T TIGR03495 38 QQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALL 77 (135)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444444444444443333
No 456
>PRK15396 murein lipoprotein; Provisional
Probab=25.53 E-value=2.5e+02 Score=25.63 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~ 871 (1065)
-|..+|..|.++|..|.+..+....++|..+..++.|
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ra 65 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777766666666666655444443
No 457
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=25.45 E-value=6.6e+02 Score=29.42 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh---h----hhHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVA-AEESS---K----AKAAKDVIKSLTAQLKD 898 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a-~~e~~---~----~k~~~e~ik~l~~qlk~ 898 (1065)
+.+..+=+.+.+-+.+|++++..|+++.+.++.++.++.+++++-+..- .-|.. | -+..|-=|+.|..+|..
T Consensus 126 e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~ 205 (342)
T PF06632_consen 126 EVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLAS 205 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344555566778888888888888888888888888888887755431 12221 1 12334446666665554
Q ss_pred HHh
Q 001504 899 MAE 901 (1065)
Q Consensus 899 ~~~ 901 (1065)
..+
T Consensus 206 ~~~ 208 (342)
T PF06632_consen 206 AKE 208 (342)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
No 458
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=25.24 E-value=7.1e+02 Score=25.07 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQR 853 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~ 853 (1065)
|..+++.+++.+.++
T Consensus 46 ~a~~~~~~a~~~~~e 60 (156)
T PRK05759 46 AAERAKKELELAQAK 60 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 459
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=25.22 E-value=7.7e+02 Score=26.18 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhc
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQE---LELQKSTKKAQEAMAVAAEESSK--AKAAKDVIKSLTAQLKDMAER 902 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~---~~~~~~~k~~~~~~~~a~~e~~~--~k~~~e~ik~l~~qlk~~~~k 902 (1065)
|..-.+.|-+|+.+|+-+-..|...-+++- .++++..++....+..++-+=.| -..+-++-..|=+|-=++|+|
T Consensus 43 L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~LwdeSi~LAEk 121 (228)
T PRK06800 43 LLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELLWDQSFQLAEK 121 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666653333333332222 33333333333333333332222 234455555554443333333
No 460
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.21 E-value=4.9e+02 Score=31.20 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=11.1
Q ss_pred EEeeCCeeEEEEE
Q 001504 1038 IEQYEPGVYITLV 1050 (1065)
Q Consensus 1038 ~~~~~~gv~~t~~ 1050 (1065)
..|.+|.+|+-|+
T Consensus 394 gg~~~p~LYfEiR 406 (420)
T COG4942 394 GGQGRPALYFEIR 406 (420)
T ss_pred CCCCCcchhhhhh
Confidence 6788999999886
No 461
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.15 E-value=3.6e+02 Score=23.90 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 830 KKTNELLNQEVLKLRAQVESLRQRCEF 856 (1065)
Q Consensus 830 ~~~~~~~~~~~~~~~~q~~~~~~~~~~ 856 (1065)
+++-+-|......++.+++++.++...
T Consensus 25 ~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 25 KETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666555443
No 462
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=25.13 E-value=6e+02 Score=24.18 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQR-CEFQELELQKSTKKA----QEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~-~~~~~~~~~~~~k~~----~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
.|........|+.++..+-+++-+. .+.-++++.++.... +.+..-++.|+.+ .|+|+|.--...-.-|-+++
T Consensus 15 IKeKE~S~dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e~RkeaE~--ka~eiI~~Akq~As~i~L~i 92 (111)
T PRK06397 15 IKEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEK--KAVEIINKAKQEASLIKLKI 92 (111)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc
Confidence 3556667788888888844444333 333345555544443 3333334555544 57777765554444444444
Q ss_pred C
Q 001504 904 P 904 (1065)
Q Consensus 904 ~ 904 (1065)
+
T Consensus 93 s 93 (111)
T PRK06397 93 S 93 (111)
T ss_pred C
Confidence 3
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=25.10 E-value=3.3e+02 Score=36.69 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=3.7
Q ss_pred eEEEEEc
Q 001504 90 SFSLIYN 96 (1065)
Q Consensus 90 ~FSiiy~ 96 (1065)
.|++|+|
T Consensus 24 ~~~~i~G 30 (1164)
T TIGR02169 24 GFTVISG 30 (1164)
T ss_pred CeEEEEC
Confidence 3555554
No 464
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.96 E-value=4.1e+02 Score=31.52 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVES 849 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~ 849 (1065)
....++..-+.|.-||.+||.+...
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888889999999886653
No 465
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.92 E-value=2.2e+02 Score=27.34 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1065)
Q Consensus 830 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~ 872 (1065)
...-.-|+..+..+...++.|.++-+.++.++.+.+++++++.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566666666677777777777777777777776653
No 466
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.89 E-value=2.9e+02 Score=25.04 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 001504 845 AQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKS 891 (1065)
Q Consensus 845 ~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~ 891 (1065)
.|++..-++.+.+|.|.+.....+++..+-|.-+-=--|+.+.+|+-
T Consensus 4 ~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46777778888899999999999999888777666667788888874
No 467
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=24.85 E-value=1.6e+02 Score=33.69 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELEL 861 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~ 861 (1065)
-|.||-.+|+++.+.|+.+.+++|.|.
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444333
No 468
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.84 E-value=3.5e+02 Score=31.52 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 879 SSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 879 ~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
+..-+++++=|..|..||++...++-
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~ 266 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLS 266 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555666677777777777666664
No 469
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=24.81 E-value=3.5e+02 Score=30.98 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 001504 849 SLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1065)
Q Consensus 849 ~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~ 904 (1065)
+.-.-+..+..||+...+++.++...... +...++.|+.||.+...+|++-.++-
T Consensus 81 sal~L~~~L~~eI~~f~~~l~~~~~~~e~-~~~~~~~~~~i~~V~~~ik~LL~rId 135 (302)
T PF05508_consen 81 SALPLTKDLRREIDSFDERLEEAAEKEEL-SKSSENQKESIKKVERYIKDLLARID 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhHHHHHHHHHHHHHHHHHHH
Confidence 44445566778899999988876543222 34466788888888888887776664
No 470
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=24.80 E-value=5.1e+02 Score=23.21 Aligned_cols=59 Identities=27% Similarity=0.386 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 842 KLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 842 ~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
+|.+=++.|.+....+..+.+..=..++.-.+.+..|.+ +=.+=++.|+.|+..|.+++
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455567788888888888777776666665555444333 44567888999999998875
No 471
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=24.79 E-value=1.8e+02 Score=31.81 Aligned_cols=37 Identities=35% Similarity=0.314 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKS 864 (1065)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 864 (1065)
+|..-|++|.-|-..||++-++|--|-+.+..+|+..
T Consensus 101 dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 101 DLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3445555666666666665555444444444444433
No 472
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.75 E-value=1.5e+02 Score=29.61 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 829 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
+.+.-+.|..-+..|..+++.|.++......+++...+++++
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555444444444444444444
No 473
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.74 E-value=7e+02 Score=26.87 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 001504 891 SLTAQLKDMA 900 (1065)
Q Consensus 891 ~l~~qlk~~~ 900 (1065)
.|..|+-+||
T Consensus 163 ~Lk~ei~~lA 172 (205)
T PRK06231 163 QLQKESVELA 172 (205)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 474
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=24.72 E-value=4.4e+02 Score=28.46 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLR-------QRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~-------~~~~~~~~~~~~~~k~~~~ 870 (1065)
.+++++.++|++++.|+ .|.+..+.||++.++++++
T Consensus 119 ~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~ 161 (216)
T cd07627 119 SAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASE 161 (216)
T ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 44668888888888774 4555666666665554443
No 475
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.72 E-value=3.2e+02 Score=37.28 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001504 845 AQVESLRQRCEFQELELQKSTK 866 (1065)
Q Consensus 845 ~q~~~~~~~~~~~~~~~~~~~k 866 (1065)
.|++.|+++.+....+++...+
T Consensus 404 ~~i~~l~~~~~~~~~~~~~~~~ 425 (1163)
T COG1196 404 REIESLEERLERLSERLEDLKE 425 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 476
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.67 E-value=2.6e+02 Score=28.60 Aligned_cols=48 Identities=31% Similarity=0.309 Sum_probs=36.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1065)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~ 870 (1065)
....+.+++.-+-|.....+|+..++.|.++.+..+.++|.+.++...
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777788888888888888888888888888888775443
No 477
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.62 E-value=16 Score=40.83 Aligned_cols=45 Identities=31% Similarity=0.658 Sum_probs=28.1
Q ss_pred cccccccccccccccccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHhh
Q 001504 636 LQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1065)
Q Consensus 636 s~C~~C~~~F~f~rkrh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~ 694 (1065)
..|.-|-. .+...-|--||.+||+.|- +.-...|+. |.-|..+.+
T Consensus 240 ~kC~LCLe----~~~~pSaTpCGHiFCWsCI--------~~w~~ek~e--CPlCR~~~~ 284 (293)
T KOG0317|consen 240 RKCSLCLE----NRSNPSATPCGHIFCWSCI--------LEWCSEKAE--CPLCREKFQ 284 (293)
T ss_pred CceEEEec----CCCCCCcCcCcchHHHHHH--------HHHHccccC--CCcccccCC
Confidence 35666653 2334458999999999993 222222333 888887665
No 478
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.56 E-value=85 Score=29.67 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 837 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
..++.+|+++++.|+.+.+..+.+++-..++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777766666666655554
No 479
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=24.55 E-value=8.8e+02 Score=25.91 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhhh-hHHHHH---HHHHHH---HHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA--------VAAEESSKA-KAAKDV---IKSLTA---QLKDM 899 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~--------~a~~e~~~~-k~~~e~---ik~l~~---qlk~~ 899 (1065)
.|.+..++|+..-+.|+.-|..++-+-||-+| +.--|- +-..|-+.+ +--+|. .+.|+. .||++
T Consensus 59 ~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKEl 137 (195)
T PF10226_consen 59 GLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKEL 137 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455566667778888888888887777766 333232 223333331 111122 344443 68998
Q ss_pred HhcCCCC
Q 001504 900 AERLPPG 906 (1065)
Q Consensus 900 ~~k~~~~ 906 (1065)
..-|-..
T Consensus 138 cl~LDee 144 (195)
T PF10226_consen 138 CLYLDEE 144 (195)
T ss_pred HHHHhcc
Confidence 8888533
No 480
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.52 E-value=1.7e+02 Score=37.10 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcC
Q 001504 889 IKSLTAQLKDMAERL 903 (1065)
Q Consensus 889 ik~l~~qlk~~~~k~ 903 (1065)
|+.|.++|||..+||
T Consensus 488 i~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555544
No 481
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.47 E-value=3.5e+02 Score=30.47 Aligned_cols=67 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-hhhhhhhHHHHHHHHHHHHHHHH
Q 001504 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV--AA-EESSKAKAAKDVIKSLTAQLKDM 899 (1065)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~--a~-~e~~~~k~~~e~ik~l~~qlk~~ 899 (1065)
+..+..+...-+-+.+.+..|.+...+|..|.+.+..||++.+|.++---.+ |- +|-.| |-.+|+.+
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEk----------lE~EL~~l 237 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEK----------LEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH----------HHHHHHHH
No 482
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=24.43 E-value=2e+02 Score=35.08 Aligned_cols=51 Identities=22% Similarity=0.325 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001504 853 RCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPGVYD 909 (1065)
Q Consensus 853 ~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~~~~~~~ 909 (1065)
.|..+..+|..+...+.+ -|.++.+..+.+++.++..|.++|-.+||++++
T Consensus 80 ~~~~r~~~I~~l~~~L~~------~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~r 130 (473)
T PF14643_consen 80 HSQKRKQWIKELDEDLEE------LEKERADKLKKVLRKYVEILEKIAHLLPPDVER 130 (473)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 555566666665554433 345556678999999999999999999988765
No 483
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.35 E-value=2.7e+02 Score=27.39 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~ 872 (1065)
-|+..+.-+...++.|+++-+.++.++.+.+++++++.
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555443
No 484
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=24.29 E-value=5.5e+02 Score=26.61 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001504 839 EVLKLRAQVESLRQRCEFQ 857 (1065)
Q Consensus 839 ~~~~~~~q~~~~~~~~~~~ 857 (1065)
+..+++++.+.++++.+.+
T Consensus 52 ~Ae~~k~eAe~l~a~ye~~ 70 (155)
T PRK06569 52 QADTLTIEVEKLNKYYNEE 70 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555655555554443
No 485
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.28 E-value=2.9e+02 Score=31.67 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=53.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---hhhhh----hhHHHHHHHHHH
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELE----LQKSTKKAQEAMAVAA---EESSK----AKAAKDVIKSLT 893 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~----~~~~~k~~~~~~~~a~---~e~~~----~k~~~e~ik~l~ 893 (1065)
-.+.|.+.-..|.+|-.+||.++..|+......|.+ |..|-+++.+|..-++ +|=++ +..-.|=|-+|.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888889999999888887554443332 3456677777654432 44333 234557788899
Q ss_pred HHHHHHHhcC
Q 001504 894 AQLKDMAERL 903 (1065)
Q Consensus 894 ~qlk~~~~k~ 903 (1065)
+|+-++-.|+
T Consensus 241 sqivdlQ~r~ 250 (306)
T PF04849_consen 241 SQIVDLQQRC 250 (306)
T ss_pred HHHHHHHHHH
Confidence 9988887775
No 486
>PHA02047 phage lambda Rz1-like protein
Probab=24.24 E-value=2.1e+02 Score=27.07 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 838 QEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 838 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
+|.++|.+|++.++.+.......++++..+
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444444444443
No 487
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.24 E-value=2.1e+02 Score=34.62 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQEL---------ELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLK 897 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~---------~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk 897 (1065)
.++++.-+-|.+|+.+++.+++.|++.....+. +....-+++++......+ +.+.-++-++.|..+|.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKE---ELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344444456666666666666666665444433 122222223332222222 22334455666777777
Q ss_pred HH
Q 001504 898 DM 899 (1065)
Q Consensus 898 ~~ 899 (1065)
.+
T Consensus 407 ~~ 408 (451)
T PF03961_consen 407 RS 408 (451)
T ss_pred hh
Confidence 66
No 488
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.22 E-value=3.3e+02 Score=23.71 Aligned_cols=14 Identities=14% Similarity=0.477 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 001504 832 TNELLNQEVLKLRA 845 (1065)
Q Consensus 832 ~~~~~~~~~~~~~~ 845 (1065)
+...|.+|+.+.++
T Consensus 12 akQ~~~eEL~kvk~ 25 (61)
T PF08826_consen 12 AKQAIQEELTKVKS 25 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666665554
No 489
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.20 E-value=2.6e+02 Score=29.38 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 001504 853 RCEFQELELQKSTK 866 (1065)
Q Consensus 853 ~~~~~~~~~~~~~k 866 (1065)
|.+++|.+-|.+.+
T Consensus 86 Kaeqlerdk~l~~q 99 (215)
T COG3122 86 KAEQLERDKQLSEQ 99 (215)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 490
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.15 E-value=1.4e+02 Score=33.79 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001504 836 LNQEVLKLRAQVESLRQR 853 (1065)
Q Consensus 836 ~~~~~~~~~~q~~~~~~~ 853 (1065)
|.+|-++||.|+..|+++
T Consensus 71 l~~EN~~Lr~e~~~l~~~ 88 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQ 88 (283)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555433
No 491
>PLN00203 glutamyl-tRNA reductase
Probab=24.14 E-value=3.4e+02 Score=33.61 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHh--hhhhhhHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRA---------QVESLRQRCEF-QELELQKSTKKAQE-AMAVAAE--ESSKAKAAKDVIKSLT 893 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~---------q~~~~~~~~~~-~~~~~~~~~k~~~~-~~~~a~~--e~~~~k~~~e~ik~l~ 893 (1065)
+.+.+.++++.+|+.+... -|..|+++++. ++.||+++-+|+.+ ...-..+ |..-+..++.++.--+
T Consensus 405 ~~~~~Ae~II~ee~~~F~~w~~~~~~~p~I~~lr~~~~~i~~~Eler~~~kl~~~~~~~~~~~ie~~~~~ivnkllh~P~ 484 (519)
T PLN00203 405 RKAMEAQTIIREESKNFEAWRDSLETVPTIKKLRSYAERIRAAELEKCLSKMGDDLTKKQRKAVEDLSRGIVNKLLHGPM 484 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999888766 25678888765 67899999888632 1111111 1112334555555555
Q ss_pred HHHHHHH
Q 001504 894 AQLKDMA 900 (1065)
Q Consensus 894 ~qlk~~~ 900 (1065)
.+||+.+
T Consensus 485 ~~Lr~~a 491 (519)
T PLN00203 485 QHLRCDG 491 (519)
T ss_pred HHHHHhh
Confidence 5788765
No 492
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.12 E-value=4.1e+02 Score=33.21 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001504 827 DSLKKTNELLNQEVLKLRAQ 846 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q 846 (1065)
+.++..|+-|..|+.+|+..
T Consensus 320 ~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 320 EHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555555553
No 493
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=24.11 E-value=51 Score=25.15 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=14.8
Q ss_pred eecCCCcccccccccCCCCCCceEeccchHh
Q 001504 661 HCHSCSSRKALRAALAPNPGKPYRVCDCCFA 691 (1065)
Q Consensus 661 ~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~ 691 (1065)
||..|... +...+....+.+..||..|-.
T Consensus 2 fC~~CG~~--l~~~ip~gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 2 FCPQCGGP--LERRIPEGDDRERLVCPACGF 30 (34)
T ss_dssp B-TTT--B---EEE--TT-SS-EEEETTTTE
T ss_pred ccccccCh--hhhhcCCCCCccceECCCCCC
Confidence 67777653 333444556788899999964
No 494
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=24.08 E-value=2.5e+02 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 835 LLNQEVLKLRAQVESLRQRCEFQELE 860 (1065)
Q Consensus 835 ~~~~~~~~~~~q~~~~~~~~~~~~~~ 860 (1065)
-|..||+||+++....+...+-+-++
T Consensus 6 eLk~evkKL~~~A~~~kmdLHDLaEd 31 (66)
T PF05082_consen 6 ELKKEVKKLNRKATQAKMDLHDLAED 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666777766665555555544433
No 495
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=24.02 E-value=1.1e+02 Score=31.53 Aligned_cols=47 Identities=19% Similarity=0.354 Sum_probs=36.6
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001504 821 FSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1065)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~ 867 (1065)
+...+...++..-+.+.+++.+|+-..++|+++||+++.-|+.....
T Consensus 58 l~~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~~ 104 (153)
T PF08287_consen 58 LRDEIEPQINHLLDKAEKHLEKLQRREETLKAKCELQQGRLSNYEST 104 (153)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 33444555666666778899999999999999999999988876553
No 496
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=23.98 E-value=2.5e+02 Score=27.44 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001504 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEE 878 (1065)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e 878 (1065)
+........|++++.++++|.+.|.++-..++.|+.+++...+=-.+.|+.+
T Consensus 46 ~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~ 97 (117)
T COG2919 46 KNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSE 97 (117)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
No 497
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.87 E-value=4.3e+02 Score=32.60 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
....++...+-+.+++.+|++|++.|+++.+..+..+....++.+.......+|-.+.....+-++.--.+|++-...+
T Consensus 168 ~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 168 MDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=23.81 E-value=26 Score=44.89 Aligned_cols=78 Identities=33% Similarity=0.482 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--------------------HHHHHHHHhhh
Q 001504 826 TDSLKKTNELLN---QEVLKLRAQVESLRQ---RCEFQELELQKSTKKA--------------------QEAMAVAAEES 879 (1065)
Q Consensus 826 ~~~~~~~~~~~~---~~~~~~~~q~~~~~~---~~~~~~~~~~~~~k~~--------------------~~~~~~a~~e~ 879 (1065)
++.|++.|+-|. +|+..||-++..|++ |++.++.+|++|+||+ .+...+-.+|-
T Consensus 276 i~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 276 IDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 880 SKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 880 ~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
.|..+.+.-+..+..|+.+|..++
T Consensus 356 ~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 356 KKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp ------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
No 499
>PRK00736 hypothetical protein; Provisional
Probab=23.80 E-value=3.1e+02 Score=24.23 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcC
Q 001504 843 LRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1065)
Q Consensus 843 ~~~q~~~~~~~~~~~~~~~~~~~k~~~~~~~~a~~e~~~~k~~~e~ik~l~~qlk~~~~k~ 903 (1065)
+.+.++.|+.|.-.||.-|+.+.+-+-+=+..... |+.||+.|.+|+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~--------------L~~ql~~L~~rl 49 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQ--------------MRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
No 500
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=23.68 E-value=23 Score=27.28 Aligned_cols=36 Identities=33% Similarity=0.589 Sum_probs=0.0
Q ss_pred ccccccCCceeecCCCcccccccccCCCCCCceEeccchHhHhhhhcc
Q 001504 651 RHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVSE 698 (1065)
Q Consensus 651 rh~C~~CG~v~C~~CS~~k~~~~~l~p~~~kp~RVC~~C~~~l~~~~~ 698 (1065)
|.-|..||.+|. +.+.+.+.--+|+.|-..|.+..+
T Consensus 1 Rr~C~~Cg~~Yh------------~~~~pP~~~~~Cd~cg~~L~qR~D 36 (36)
T PF05191_consen 1 RRICPKCGRIYH------------IEFNPPKVEGVCDNCGGELVQRKD 36 (36)
T ss_dssp EEEETTTTEEEE------------TTTB--SSTTBCTTTTEBEBEEGG
T ss_pred CcCcCCCCCccc------------cccCCCCCCCccCCCCCeeEeCCC
Done!