Query 001504
Match_columns 1065
No_of_seqs 621 out of 3135
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 15:49:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001504.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_807-811//hhsearch_pdb/001504hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 1.0 1 1 570.8 36.1 372 232-628 12-388 (389)
2 3of7_A Regulator of chromosome 1.0 1 1 547.9 40.9 370 234-628 23-451 (473)
3 4d9s_A UVB-resistance protein 1.0 1 1 547.3 39.5 353 230-607 25-379 (406)
4 1a12_A RCC1, regulator of chro 1.0 1 1 537.9 43.1 366 233-628 20-410 (413)
5 3mvd_K Regulator of chromosome 1.0 1 1 536.4 44.7 366 230-628 33-419 (423)
6 4d9s_A UVB-resistance protein 1.0 1 1 523.3 42.6 349 282-659 15-365 (406)
7 3kci_A Probable E3 ubiquitin-p 1.0 1 1 494.0 32.2 328 287-628 5-336 (389)
8 3of7_A Regulator of chromosome 1.0 1 1 480.8 27.9 343 284-659 11-413 (473)
9 3mvd_K Regulator of chromosome 1.0 1 1 479.8 33.7 323 282-627 23-364 (423)
10 1a12_A RCC1, regulator of chro 1.0 1 1 473.2 32.9 318 287-627 12-355 (413)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=570.84 Aligned_cols=372 Identities=34% Similarity=0.607 Sum_probs=341.6
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCC
Q ss_conf 65313889979996478999813689888754567554313542235688898899995697699997199099992899
Q 001504 232 APDDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEES 311 (1065)
Q Consensus 232 ~~~~l~s~G~Vy~WG~n~~~G~LG~G~~~~~~~~~~~~~~~~P~~l~~~~~~~V~~Ia~G~~Ht~~LT~~G~Vy~wG~n~ 311 (1065)
.+.+++++|.||+||.| ..||||.+.. .+...|.+++.....+|++|+||..|+++|+++|+||+||.|.
T Consensus 12 ~~~~l~~~G~v~~wG~n-~~GqLG~~~~---------~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 81 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHN-HRGQLGGIEG---------AKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81 (389)
T ss_dssp ---------CEEEEEEC-TTSTTSSCSC---------SEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred CCEEECCCCEEEEEECC-CCCCCCCCCC---------CCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECCC
T ss_conf 22668899869970389-9751898968---------6642777601346786599984777399995898199988999
Q ss_pred CCCCCCCCCCCEECCEEEECCCCCCE--EEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 99667899965002277301589977--9999479859999928959995799889976789998640000122389889
Q 001504 312 GGRLGHGVGKDIVQPHLLESLTMTSV--DFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEG 389 (1065)
Q Consensus 312 ~GqLG~g~~~~~~~P~~V~~l~~~~I--~~VacG~~ht~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~ 389 (1065)
+||||++...+...|+.++.+....+ ++|+||.+|+++|+++|+||+||.| .+||||+++......|.++.. +.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~~ 158 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LRG 158 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GTT
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCCCCEEECC-CCC
T ss_conf 98889899677337777110157732599987687749999489979997299--898678998756758768436-689
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCC--CEEEEEEEEEEECCCC
Q ss_conf 83999982597389994299199981799875578999873345353036642199984178--5489999865304443
Q 001504 390 LQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGV--WHTAAVVEVIVTQSSA 467 (1065)
Q Consensus 390 ~~Iv~Ia~G~~Htialts~G~VytwG~N~~GQLG~g~~~~~~~P~~V~~l~~~~V~~VaaG~--~Ht~alve~~~~~~~~ 467 (1065)
.+|++|+||..|+++|+++|+||+||.|.+||||+++......|..+..+.+.+|++|+||. .|++++
T Consensus 159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l---------- 228 (389)
T 3kci_A 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL---------- 228 (389)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEE----------
T ss_pred CEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEE----------
T ss_conf 7399997175858999489808994899888768999866045568504589839999976898589999----------
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCC-CCC
Q ss_conf 2379919995189998889999999645257345678978999951878999954990999938997788999999-975
Q 001504 468 SVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNAD-GKL 546 (1065)
Q Consensus 468 ~t~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~-~~~ 546 (1065)
+.+|+||+||.|.+||||.++......|+.|..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+... ...
T Consensus 229 -~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 307 (389)
T 3kci_A 229 -TDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR 307 (389)
T ss_dssp -ETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEE
T ss_pred -CCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf -0599799973998887798998885446795466899679994799879999589939998589998888999866208
Q ss_pred CEEEECCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCEEEE
Q ss_conf 44531035798706899737842245069839999389999788999988855389512457517997318985310863
Q 001504 547 PCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAICL 626 (1065)
Q Consensus 547 P~~V~~~l~~~~V~~Ia~G~~Ht~vLT~~G~VytWG~n~~GQLG~Gd~~d~~~P~~V~~l~~~~V~~IacG~~hT~aI~~ 626 (1065)
|..+.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|+.+.+.+|++|+||.+||+||+.
T Consensus 308 P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~ 386 (389)
T 3kci_A 308 PRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWST 386 (389)
T ss_dssp EEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEECC
T ss_pred CEEECC-CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEEEEEC
T ss_conf 758514-7999889999445709999899989980389988688989877467679113589987999966782899946
Q ss_pred EE
Q ss_conf 10
Q 001504 627 HK 628 (1065)
Q Consensus 627 ~k 628 (1065)
.+
T Consensus 387 ~~ 388 (389)
T 3kci_A 387 SK 388 (389)
T ss_dssp --
T ss_pred CC
T ss_conf 99
No 2
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=547.94 Aligned_cols=370 Identities=21% Similarity=0.359 Sum_probs=313.5
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEECCCEEEEEECCCCEEEEECCC
Q ss_conf 31388997999647899981368988875456755431354223568--8898899995697699997199099992899
Q 001504 234 DDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESN--VVLDVHHIACGVRHAALVTRQGEVFTWGEES 311 (1065)
Q Consensus 234 ~~l~s~G~Vy~WG~n~~~G~LG~G~~~~~~~~~~~~~~~~P~~l~~~--~~~~V~~Ia~G~~Ht~~LT~~G~Vy~wG~n~ 311 (1065)
.+++..|+||+||.| ..||||.|... ...+...|.+++.. ...+|++|+||..|+++|+.+|+||+||.|.
T Consensus 23 ~~~~~~g~v~~wG~n-~~GqLG~G~~~------~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~ 95 (473)
T 3of7_A 23 YLSVQPLDIFCWGTG-SMCELGLGPLA------KNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCND 95 (473)
T ss_dssp HCCSSCCEEEEEEEC-TTSTTCSCSCG------GGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred CCCCCCCCEEEECCC-CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCC
T ss_conf 267887658998189-88736989776------66445576215545557787899970787699991698499968998
Q ss_pred CCCCCCCCCCC-----------------------EECCEEEEC--C----CCCCEEEEEECCCEEEEEEECCCEEEECCC
Q ss_conf 99667899965-----------------------002277301--5----899779999479859999928959995799
Q 001504 312 GGRLGHGVGKD-----------------------IVQPHLLES--L----TMTSVDFVTCGEFHTCAVTMAGELYTWGDG 362 (1065)
Q Consensus 312 ~GqLG~g~~~~-----------------------~~~P~~V~~--l----~~~~I~~VacG~~ht~aLT~dG~Vy~WG~n 362 (1065)
+||||++.... ...|..|.. + .+.+|++|+||.+|+++|+++|+||+||.|
T Consensus 96 ~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n 175 (473)
T 3of7_A 96 VGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTF 175 (473)
T ss_dssp TSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 88899988653333234565556754334446334675013434577545898189998268879999489849994699
Q ss_pred CCCCCCCCCCCC--CCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCC----CCCCEEE
Q ss_conf 889976789998--6400001223898898399998259738999429919998179987557899987----3345353
Q 001504 363 THNAGLLGHGTD--VSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKN----VSYPREV 436 (1065)
Q Consensus 363 ~~~~GqLG~g~~--~~~~~P~~I~~~l~~~~Iv~Ia~G~~Htialts~G~VytwG~N~~GQLG~g~~~~----~~~P~~V 436 (1065)
.+..||||.+.. .....|.+|.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||++.... ...|..+
T Consensus 176 ~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~ 254 (473)
T 3of7_A 176 RCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF 254 (473)
T ss_dssp EETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 6898754888877741447677552-478887999963783899917992999769988888988445433354375212
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCC----CCCCCEEECCCCCCCEEEEEE
Q ss_conf 0366421999841785489999865304443237991999518999888999999----964525734567897899995
Q 001504 437 ESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKE----PRLKPTCVPALIDYNFHKVAC 512 (1065)
Q Consensus 437 ~~l~~~~V~~VaaG~~Ht~alve~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~----~~~~Pt~V~~l~~~~I~~Ia~ 512 (1065)
.. .+|++|+||.+|++|| +.+|+||+||.|.+||||.+... ....|+.|..+.+.+|++|+|
T Consensus 255 ~~---~~v~~Ia~G~~hs~al-----------t~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~ 320 (473)
T 3of7_A 255 GL---RHVKYIASGENHCFAL-----------TKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAA 320 (473)
T ss_dssp SC---CSEEEEEECSSEEEEE-----------ETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEE
T ss_pred CC---CCEEEEECCCCEEEEE-----------ECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEE
T ss_conf 77---6638995489758999-----------169988993789898858887656884454132125567863899986
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCCC-----------C----CCCEEEECCCCCCCEEEEEECCCCCEEEECCCE
Q ss_conf 1878999954990999938997788999999-----------9----754453103579870689973784224506983
Q 001504 513 GHSLTVGLTTSGHVFTMGSTVYGQLGNPNAD-----------G----KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNE 577 (1065)
Q Consensus 513 G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~-----------~----~~P~~V~~~l~~~~V~~Ia~G~~Ht~vLT~~G~ 577 (1065)
|.+|++||+++|+||+||.|.+||||.+... . ..|..+.. ...|++|+||.+|+++|+++|+
T Consensus 321 G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~---~~~v~~Ia~G~~hs~al~~~G~ 397 (473)
T 3of7_A 321 GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAVAQNGI 397 (473)
T ss_dssp CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS---SCCEEEEEECSSEEEEEETTSC
T ss_pred CCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCEEEEEECCCEEEEEECCCC
T ss_conf 7886999938982999878998741888444665310045786026216700478---7753799857876999968984
Q ss_pred EEEEECCCCCCCCCCC-CCCCCCCEEEC--CCCCCCEEEEECCCCCCCEEEEEE
Q ss_conf 9999389999788999-98885538951--245751799731898531086310
Q 001504 578 VYTWGKGANGRLGHGD-VEDRKTPALVE--ALKDRHVKYIACGSNYSAAICLHK 628 (1065)
Q Consensus 578 VytWG~n~~GQLG~Gd-~~d~~~P~~V~--~l~~~~V~~IacG~~hT~aI~~~k 628 (1065)
||+||.|.+||||+|+ ..+...|++|+ .+.+.+|++|+||..||++|..+.
T Consensus 398 vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~~ 451 (473)
T 3of7_A 398 AYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKL 451 (473)
T ss_dssp EEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEEC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEEEEEECC
T ss_conf 899628989888799977656378482256668972899951888599997447
No 3
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=547.28 Aligned_cols=353 Identities=34% Similarity=0.596 Sum_probs=323.9
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCC-CEEEEE
Q ss_conf 9865313889979996478999813689888754567554313542235688898899995697699997199-099992
Q 001504 230 GSAPDDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQG-EVFTWG 308 (1065)
Q Consensus 230 Gs~~~~l~s~G~Vy~WG~n~~~G~LG~G~~~~~~~~~~~~~~~~P~~l~~~~~~~V~~Ia~G~~Ht~~LT~~G-~Vy~wG 308 (1065)
+....+++++|.||+||.| .+||||.|.. .+...|.+++.....+|++|+||..|+++|+++| +||+||
T Consensus 25 ~~hs~al~~~g~v~~wG~n-~~GqLG~g~~---------~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 25 ASHSVALLSGDIVCSWGRG-EDGQLGHGDA---------EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp SSEEEEEETTTEEEEEECC-TTSTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEECCEEEEEECC-CCCCCCCCCC---------CCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 7909999829989998699-9988897986---------55738878224689978999828450899988899899975
Q ss_pred CCCCCCCCCCCCCCEECCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 89999667899965002277301589977999947985999992895999579988997678999864000012238988
Q 001504 309 EESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLE 388 (1065)
Q Consensus 309 ~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~I~~~l~ 388 (1065)
.|.+||||++...+...|..+..+.+.+|++|+||.+|+++|+++|+||+||.| .+||||.+.......|.++. .+.
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~-~~~ 171 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDTEDSLVPQKIQ-AFE 171 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSCCCEEEEEECG-GGT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECHHHEEEECCCCCEEEECCC--CCCCCCCCCCCCCCCCEEEC-CCC
T ss_conf 998868998998764610684146899889999770465897389859990799--87547798987755235743-568
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEEEECCCCC
Q ss_conf 98399998259738999429919998179987557899987334535303664219998417854899998653044432
Q 001504 389 GLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSAS 468 (1065)
Q Consensus 389 ~~~Iv~Ia~G~~Htialts~G~VytwG~N~~GQLG~g~~~~~~~P~~V~~l~~~~V~~VaaG~~Ht~alve~~~~~~~~~ 468 (1065)
+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|.++..+.+.+|++|+||.+|+++|
T Consensus 172 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l----------- 240 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV----------- 240 (406)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEE-----------
T ss_pred CCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEE-----------
T ss_conf 973899964787399994799889841798887788998776862784036896299999789818999-----------
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCC-CCCC
Q ss_conf 379919995189998889999999645257345678978999951878999954990999938997788999999-9754
Q 001504 469 VSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNAD-GKLP 547 (1065)
Q Consensus 469 t~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~-~~~P 547 (1065)
+.+|+||+||.|.+||||+++......|+.|..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+... ...|
T Consensus 241 ~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p 320 (406)
T 4d9s_A 241 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP 320 (406)
T ss_dssp ETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEE
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 48998899638998878999876750567823258998899984678799995999099933899888878998777467
Q ss_pred EEEECCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 453103579870689973784224506983999938999978899998885538951245
Q 001504 548 CLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALK 607 (1065)
Q Consensus 548 ~~V~~~l~~~~V~~Ia~G~~Ht~vLT~~G~VytWG~n~~GQLG~Gd~~d~~~P~~V~~l~ 607 (1065)
..+.. +...+|++|+||.+|+++|+++|+||+||.|.+||||+|+..++..|++|+.+.
T Consensus 321 ~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 321 VQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp EEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred EEEEC-CCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 79732-679858999928994999948997899659988866899987773887850026
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=537.87 Aligned_cols=366 Identities=25% Similarity=0.430 Sum_probs=315.5
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCC
Q ss_conf 53138899799964789998136898887545675543135422356888988999956976999971990999928999
Q 001504 233 PDDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESG 312 (1065)
Q Consensus 233 ~~~l~s~G~Vy~WG~n~~~G~LG~G~~~~~~~~~~~~~~~~P~~l~~~~~~~V~~Ia~G~~Ht~~LT~~G~Vy~wG~n~~ 312 (1065)
..+++.+|.||+||.| ..||||.|... .....|..++. ..+|++|+||..|+++|+++|+||+||.|.+
T Consensus 20 ~~~l~~~g~v~~wG~n-~~GqLG~g~~~--------~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~ 88 (413)
T 1a12_A 20 RSHSTEPGLVLTLGQG-DVGQLGLGENV--------MERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDE 88 (413)
T ss_dssp TTCCCCCBEEEEEEEC-TTSTTCSCTTC--------CEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred CEEECCCCCEEEEECC-CCCCCCCCCCC--------CCCCCCEECCC--CCCEEEEEECCCEEEEECCCCCEEEEECCCC
T ss_conf 0400689868997789-89837989986--------43046567168--8986999867775899947998999889998
Q ss_pred CCCCCCCC--CCEECCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCE-EEEEEECCCCCC
Q ss_conf 96678999--650022773015899779999479859999928959995799889976789998640-000122389889
Q 001504 313 GRLGHGVG--KDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSH-WIPKRISGPLEG 389 (1065)
Q Consensus 313 GqLG~g~~--~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~-~~P~~I~~~l~~ 389 (1065)
||||++.. .....|+.|.. . .+|++|+||.+|+++|+++|+||+||.+.+.+||||.+..... ..|.+|. ..
T Consensus 89 GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~---~~ 163 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ---LD 163 (413)
T ss_dssp STTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEEC---CS
T ss_pred CCCCCCCCCCCCCCCCEEECC-C-CCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEC---CC
T ss_conf 877988888753458747538-8-758999668873799848994899437768998637678664466787961---89
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCC-----------CCCCCEEECCC-----CCCEEEEEECCCCE
Q ss_conf 839999825973899942991999817998755789998-----------73345353036-----64219998417854
Q 001504 390 LQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRK-----------NVSYPREVESL-----SGLRTIAVACGVWH 453 (1065)
Q Consensus 390 ~~Iv~Ia~G~~Htialts~G~VytwG~N~~GQLG~g~~~-----------~~~~P~~V~~l-----~~~~V~~VaaG~~H 453 (1065)
.+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.+... ...+|++|+||.+|
T Consensus 164 ~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~h 243 (413)
T 1a12_A 164 VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYF 243 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTE
T ss_pred CCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCE
T ss_conf 97799984676189985899889833898886688753334555545532244674576314566678548999707887
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCC--CCEEEEEECCCEEEEEECCCCEEEEEC
Q ss_conf 899998653044432379919995189998889999999645257345678--978999951878999954990999938
Q 001504 454 TAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALID--YNFHKVACGHSLTVGLTTSGHVFTMGS 531 (1065)
Q Consensus 454 t~alve~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~--~~I~~Ia~G~~htvaLT~dG~Vy~wGs 531 (1065)
+++| +.+|+||+||.|.+||||+++......|+.|..+.+ .+|++|+||.+|++||+++|+||+||.
T Consensus 244 s~al-----------t~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~ 312 (413)
T 1a12_A 244 TFAI-----------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 312 (413)
T ss_dssp EEEE-----------ETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred EEEE-----------ECCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEEC
T ss_conf 9999-----------68997999849987677799987635667701015887329999505245899907998998648
Q ss_pred CCCCCCCCCC--CCCCCCEEEECCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECC--CC
Q ss_conf 9977889999--9997544531035798706899737842245069839999389999788999988855389512--45
Q 001504 532 TVYGQLGNPN--ADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEA--LK 607 (1065)
Q Consensus 532 n~~GQLG~~~--~~~~~P~~V~~~l~~~~V~~Ia~G~~Ht~vLT~~G~VytWG~n~~GQLG~Gd~~d~~~P~~V~~--l~ 607 (1065)
|.+||||.+. .....|..|... ..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|.. +.
T Consensus 313 n~~GqLG~g~~~~~~~~P~~v~~l---~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~ 389 (413)
T 1a12_A 313 AEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLE 389 (413)
T ss_dssp CGGGTTCSCTTCCCEEEEEECCSS---SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCC---CCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 988866899988636677792266---76259997756479994899789922898987879998875537485455658
Q ss_pred CCCEEEEECCCCCCCEEEEEE
Q ss_conf 751799731898531086310
Q 001504 608 DRHVKYIACGSNYSAAICLHK 628 (1065)
Q Consensus 608 ~~~V~~IacG~~hT~aI~~~k 628 (1065)
+..|++|+||.+||++|+.+.
T Consensus 390 ~~~v~~v~~G~~ht~~l~~~g 410 (413)
T 1a12_A 390 NRVVLSVSSGGQHTVLLVKDK 410 (413)
T ss_dssp TEEEEEEEECSSEEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEEECC
T ss_conf 986999955788289998168
No 5
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=536.36 Aligned_cols=366 Identities=23% Similarity=0.392 Sum_probs=316.6
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
Q ss_conf 98653138899799964789998136898887545675543135422356888988999956976999971990999928
Q 001504 230 GSAPDDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGE 309 (1065)
Q Consensus 230 Gs~~~~l~s~G~Vy~WG~n~~~G~LG~G~~~~~~~~~~~~~~~~P~~l~~~~~~~V~~Ia~G~~Ht~~LT~~G~Vy~wG~ 309 (1065)
.....+++.+|+||+||.| ..||||.|.+ ......|.+++.. .+|++|+||..|+++|+++|+||+||.
T Consensus 33 ~~~~~~l~~~G~v~~wG~n-~~GqLG~g~~--------~~~~~~p~~v~~l--~~v~~va~G~~h~~~l~~~G~v~~wG~ 101 (423)
T 3mvd_K 33 LELPKRRTVLGNVLVCGNG-DVGQLGLGED--------ILERKRLSPVAGI--PDAVDISAGGMHNLVLTKSGDIYSFGC 101 (423)
T ss_dssp CCCCCCCCCCEEEEEEEEC-TTSTTCSCSS--------CCEEEEEEECCSC--SSEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCCCEEECCCCCEEEEECC-CCCCCCCCCC--------CCCCCCCEECCCC--CCCEEEEECCCEEEEEECCCEEEEEEC
T ss_conf 7653316699719998699-8777899998--------7567687675688--984499507894899957994998678
Q ss_pred CCCCCCCCCCCCC--EECCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECC--CCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 9999667899965--002277301589977999947985999992895999579--988997678999864000012238
Q 001504 310 ESGGRLGHGVGKD--IVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGD--GTHNAGLLGHGTDVSHWIPKRISG 385 (1065)
Q Consensus 310 n~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~--n~~~~GqLG~g~~~~~~~P~~I~~ 385 (1065)
|.+||||++...+ ...|..|... .+|++|+||.+|+++|+++|+||+||. | .+||||.+.......|.++.
T Consensus 102 n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n--~~GqlG~~~~~~~~~p~~~~- 176 (423)
T 3mvd_K 102 NDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRD--SHGNMGLTIDGNKRTPIDLM- 176 (423)
T ss_dssp CSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEEC--SSSEEESBTTBCEEEEEESS-
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCC--CCEEEEECCCCEEEEEECCCEEEEEECCCC--CCCCCCCCCCCCCCEEEEEC-
T ss_conf 9985899987678656577597479--978999848682899917996999769889--89986747788872346966-
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC-----------CCCCCCEEECCCCCCEEEEEECCCCEE
Q ss_conf 988983999982597389994299199981799875578999-----------873345353036642199984178548
Q 001504 386 PLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDR-----------KNVSYPREVESLSGLRTIAVACGVWHT 454 (1065)
Q Consensus 386 ~l~~~~Iv~Ia~G~~Htialts~G~VytwG~N~~GQLG~g~~-----------~~~~~P~~V~~l~~~~V~~VaaG~~Ht 454 (1065)
.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.. .....|.++..+...+|++|+||.+|+
T Consensus 177 --~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~ 254 (423)
T 3mvd_K 177 --EGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCT 254 (423)
T ss_dssp --TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEE
T ss_pred --CCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEE
T ss_conf --998589995389749999269809996278678547776434454333453335687688406886279999799679
Q ss_pred EEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
Q ss_conf 99998653044432379919995189998889999999--6452573456789789999518789999549909999389
Q 001504 455 AAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEP--RLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGST 532 (1065)
Q Consensus 455 ~alve~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~--~~~Pt~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wGsn 532 (1065)
+++. +.+|.||+||.|.+||||.+.... ...|+.+. ..+|++|+||.+|++||+++|+||+||.|
T Consensus 255 ~~~~----------~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 255 FMRE----------SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp EEEE----------TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred EEEE----------CCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC---CCCEEEEECCCCEEEEEECCCCEEEEECC
T ss_conf 9998----------8999499974999876799998874146448707---88748997246769999589939999799
Q ss_pred CCCCCCCCCCCC--CCCEEEECCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECC--CCC
Q ss_conf 977889999999--7544531035798706899737842245069839999389999788999988855389512--457
Q 001504 533 VYGQLGNPNADG--KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEA--LKD 608 (1065)
Q Consensus 533 ~~GQLG~~~~~~--~~P~~V~~~l~~~~V~~Ia~G~~Ht~vLT~~G~VytWG~n~~GQLG~Gd~~d~~~P~~V~~--l~~ 608 (1065)
.+||||.+.... ..|..+.. +.. .|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|.. +.+
T Consensus 322 ~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~ 399 (423)
T 3mvd_K 322 EYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQG 399 (423)
T ss_dssp GGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTT
T ss_pred CCCCCCCCCCCCCCCCCEEECC-CCC-CEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 8888798986665468667214-799-77999768986999958998899799979898799997860576973766479
Q ss_pred CCEEEEECCCCCCCEEEEEE
Q ss_conf 51799731898531086310
Q 001504 609 RHVKYIACGSNYSAAICLHK 628 (1065)
Q Consensus 609 ~~V~~IacG~~hT~aI~~~k 628 (1065)
.+|++|+||.+||++|+.+.
T Consensus 400 ~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 400 KHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp CCEEEEEECSSEEEEEEECC
T ss_pred CEEEEEEECCCCEEEEECCC
T ss_conf 78999977888289997166
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=523.26 Aligned_cols=349 Identities=32% Similarity=0.578 Sum_probs=318.7
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEECCEEEECCCCCCEEEEEECCCEEEEEEECC-CEEEEC
Q ss_conf 8988999956976999971990999928999966789996500227730158997799994798599999289-599957
Q 001504 282 VLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAG-ELYTWG 360 (1065)
Q Consensus 282 ~~~V~~Ia~G~~Ht~~LT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG-~Vy~WG 360 (1065)
..+|++|+||..|+++|+.+|+||+||.|.+||||++...+...|+.+..+...+|++|+||.+|+++|+.+| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 66469996187909999829989998699998889798655738878224689978999828450899988899899975
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 99889976789998640000122389889839999825973899942991999817998755789998733453530366
Q 001504 361 DGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLS 440 (1065)
Q Consensus 361 ~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv~Ia~G~~Htialts~G~VytwG~N~~GQLG~g~~~~~~~P~~V~~l~ 440 (1065)
.| .+||||++.......|.++. .+.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|.++..+.
T Consensus 95 ~n--~~GqLG~g~~~~~~~p~~v~-~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CC--GGGTTCSSSCCCEEEEEECG-GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CC--CCCCCCCCCCCCCCCCEEEC-CCCCCCEEEEEECHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 99--88689989987646106841-4689988999977046589738985999079987547798987755235743568
Q ss_pred CCEEEEEECCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEE
Q ss_conf 42199984178548999986530444323799199951899988899999996452573456789789999518789999
Q 001504 441 GLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGL 520 (1065)
Q Consensus 441 ~~~V~~VaaG~~Ht~alve~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~~Ia~G~~htvaL 520 (1065)
+.+|++|+||.+|++|| +.+|+||+||.|.+||||+++......|++|..+...+|++|+||.+|+++|
T Consensus 172 ~~~i~~va~G~~hs~al-----------t~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l 240 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAV-----------TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV 240 (406)
T ss_dssp TCCEEEEEECSSEEEEE-----------ETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEE
T ss_pred CCCEEEEECCCCEEEEE-----------ECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEE
T ss_conf 97389996478739999-----------4799889841798887788998776862784036896299999789818999
Q ss_pred ECCCCEEEEECCCCCCCCCCCCC-CCCCEEEECCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 54990999938997788999999-97544531035798706899737842245069839999389999788999988855
Q 001504 521 TTSGHVFTMGSTVYGQLGNPNAD-GKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKT 599 (1065)
Q Consensus 521 T~dG~Vy~wGsn~~GQLG~~~~~-~~~P~~V~~~l~~~~V~~Ia~G~~Ht~vLT~~G~VytWG~n~~GQLG~Gd~~d~~~ 599 (1065)
+.+|+||+||.|.+||||.+... ...|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...
T Consensus 241 ~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 319 (406)
T 4d9s_A 241 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS 319 (406)
T ss_dssp ETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 489988996389988789998767505678232-5899889998467879999599909993389988887899877746
Q ss_pred CEEECCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 389512457517997318985310863101233000013322244434556644446883
Q 001504 600 PALVEALKDRHVKYIACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGL 659 (1065)
Q Consensus 600 P~~V~~l~~~~V~~IacG~~hT~aI~~~kwv~~~d~s~C~~C~~~Fsf~rkrH~C~~CG~ 659 (1065)
|++|..+.+.+|++|+||.+|++||+.. +..|.|++..+++...|.
T Consensus 320 p~~v~~~~~~~v~~va~G~~hs~alt~~--------------G~v~~wG~n~~GqLG~g~ 365 (406)
T 4d9s_A 320 PVQVRFPDDQKVVQVSCGWRHTLAVTER--------------NNVFAWGRGTNGQLGIGE 365 (406)
T ss_dssp EEEECCGGGCCEEEEEECSSEEEEEETT--------------SCEEEEECCTTSTTCSSS
T ss_pred CEEEECCCCCCEEEEEECCCEEEEEECC--------------CCEEEECCCCCCCCCCCC
T ss_conf 7797326798589999289949999489--------------978996599888668999
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=494.00 Aligned_cols=328 Identities=34% Similarity=0.577 Sum_probs=300.1
Q ss_pred EEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEECCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCC
Q ss_conf 99956976999971990999928999966789996500227730158997799994798599999289599957998899
Q 001504 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNA 366 (1065)
Q Consensus 287 ~Ia~G~~Ht~~LT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~n~~~~ 366 (1065)
++..-..+.++|+.+|+||+||.|.+||||.+...+...|+.++.+...+|++|+||.+|+++|+++|+||+||.| .+
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~~ 82 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--AG 82 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--GG
T ss_pred CCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECC--CC
T ss_conf 4465743226688998699703899751898968664277760134678659998477739999589819998899--99
Q ss_pred CCCCCCCCCCEEEEEEECCCCC-CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf 7678999864000012238988-983999982597389994299199981799875578999873345353036642199
Q 001504 367 GLLGHGTDVSHWIPKRISGPLE-GLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTI 445 (1065)
Q Consensus 367 GqLG~g~~~~~~~P~~I~~~l~-~~~Iv~Ia~G~~Htialts~G~VytwG~N~~GQLG~g~~~~~~~P~~V~~l~~~~V~ 445 (1065)
||||.+.......|.++..... ..++++|+||..|+++|+++|+||+||.|.+||||+++......|+.+..+.+.+|+
T Consensus 83 GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~ 162 (389)
T 3kci_A 83 GRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162 (389)
T ss_dssp GTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEE
T ss_conf 88898996773377771101577325999876877499994899799972998986789987567587684366897399
Q ss_pred EEECCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECC--CEEEEEECC
Q ss_conf 984178548999986530444323799199951899988899999996452573456789789999518--789999549
Q 001504 446 AVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGH--SLTVGLTTS 523 (1065)
Q Consensus 446 ~VaaG~~Ht~alve~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~~Ia~G~--~htvaLT~d 523 (1065)
+|+||.+|+++| +.+|+||+||.|.+||||+++......|+.|..+.+.+|++|+||. +|+++|+++
T Consensus 163 ~va~G~~hs~al-----------t~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~ 231 (389)
T 3kci_A 163 DVAAGGAHSACV-----------TAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD 231 (389)
T ss_dssp EEEECSSEEEEE-----------ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETT
T ss_pred EEEECCCEEEEE-----------ECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEECCC
T ss_conf 997175858999-----------489808994899888768999866045568504589839999976898589999059
Q ss_pred CCEEEEECCCCCCCCCCCCCC-CCCEEEECCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf 909999389977889999999-7544531035798706899737842245069839999389999788999988855389
Q 001504 524 GHVFTMGSTVYGQLGNPNADG-KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPAL 602 (1065)
Q Consensus 524 G~Vy~wGsn~~GQLG~~~~~~-~~P~~V~~~l~~~~V~~Ia~G~~Ht~vLT~~G~VytWG~n~~GQLG~Gd~~d~~~P~~ 602 (1065)
|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|++
T Consensus 232 G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~ 310 (389)
T 3kci_A 232 DTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQ 310 (389)
T ss_dssp TEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 979997399888779899888544679546-6899679994799879999589939998589998888999866208758
Q ss_pred ECCCCCCCEEEEECCCCCCCEEEEEE
Q ss_conf 51245751799731898531086310
Q 001504 603 VEALKDRHVKYIACGSNYSAAICLHK 628 (1065)
Q Consensus 603 V~~l~~~~V~~IacG~~hT~aI~~~k 628 (1065)
|+.+.+..|++|+||.+|++||+...
T Consensus 311 v~~l~~~~v~~ia~G~~h~~al~~~G 336 (389)
T 3kci_A 311 VQGLQGKKVIAIATGSLHCVCCTEDG 336 (389)
T ss_dssp CGGGTTCCEEEEEECSSEEEEEETTC
T ss_pred ECCCCCCCEEEEEECCCEEEEECCCC
T ss_conf 51479998899994457099998999
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=480.85 Aligned_cols=343 Identities=23% Similarity=0.356 Sum_probs=286.8
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC---CCEECCEEEECC--CCCCEEEEEECCCEEEEEEECCCEEE
Q ss_conf 8899995697699997199099992899996678999---650022773015--89977999947985999992895999
Q 001504 284 DVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVG---KDIVQPHLLESL--TMTSVDFVTCGEFHTCAVTMAGELYT 358 (1065)
Q Consensus 284 ~V~~Ia~G~~Ht~~LT~~G~Vy~wG~n~~GqLG~g~~---~~~~~P~~V~~l--~~~~I~~VacG~~ht~aLT~dG~Vy~ 358 (1065)
.|....++..|+++++.+|+||+||.|.+||||+|.. .+...|.+++.+ ...+|++|+||.+|+++|+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEE
T ss_conf 66552134201026788765899818988736989776664455762155455577878999707876999916984999
Q ss_pred ECCCCCCCCCCCCCCCCC-----------------------EEEEEEECC--CC---CCCCEEEEEECCCEEEEEECCCC
Q ss_conf 579988997678999864-----------------------000012238--98---89839999825973899942991
Q 001504 359 WGDGTHNAGLLGHGTDVS-----------------------HWIPKRISG--PL---EGLQVASVTCGPWHTALITSTGQ 410 (1065)
Q Consensus 359 WG~n~~~~GqLG~g~~~~-----------------------~~~P~~I~~--~l---~~~~Iv~Ia~G~~Htialts~G~ 410 (1065)
||.| .+||||.+.... ...|.+|.. .. .+.+|++|+||.+|+++|+++|+
T Consensus 91 wG~n--~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~ 168 (473)
T 3of7_A 91 WGCN--DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGE 168 (473)
T ss_dssp EECC--TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSC
T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCE
T ss_conf 6899--88889998865333323456555675433444633467501343457754589818999826887999948984
Q ss_pred EEEEEC--CCCCCCCCCCC--CCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 999817--99875578999--87334535303664219998417854899998653044432379919995189998889
Q 001504 411 LFTFGD--GTFGVLGHGDR--KNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLG 486 (1065)
Q Consensus 411 VytwG~--N~~GQLG~g~~--~~~~~P~~V~~l~~~~V~~VaaG~~Ht~alve~~~~~~~~~t~~G~Ly~WG~n~~GQLG 486 (1065)
||+||. |.+||||++.. .....|.+|..+.+.+|++|+||.+|++|| +.+|+||+||.|.+||||
T Consensus 169 vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~al-----------t~~G~v~~wG~n~~GqLG 237 (473)
T 3of7_A 169 VYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFL-----------DEEGMVFAWGNGQQNQLG 237 (473)
T ss_dssp EEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEE-----------ETTSCEEEEECCTTSTTS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEE-----------ECCCEEEEEECCCCCCCC
T ss_conf 999469968987548888777414476775524788879999637838999-----------179929997699888889
Q ss_pred CCCCCC----CCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCC-----CCCEEEECCCCCC
Q ss_conf 999999----6452573456789789999518789999549909999389977889999999-----7544531035798
Q 001504 487 HGDKEP----RLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADG-----KLPCLVEDKLAGE 557 (1065)
Q Consensus 487 ~g~~~~----~~~Pt~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~~-----~~P~~V~~~l~~~ 557 (1065)
++.... ...|..+.. .+|++|+||.+|++||+.+|+||+||.|.+||||.+.... ..|..+.. +.+.
T Consensus 238 ~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~-~~~~ 313 (473)
T 3of7_A 238 RKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL-PDNV 313 (473)
T ss_dssp SCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCC-CTTC
T ss_pred CCCCCCCCCCCCCCEECCC---CCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCC
T ss_conf 8844543335437521277---66389954897589991699889937898988588876568844541321255-6786
Q ss_pred CEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCC--------------CCCCCEEECCCCCCCEEEEECCCCCCCE
Q ss_conf 70689973784224506983999938999978899998--------------8855389512457517997318985310
Q 001504 558 SVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVE--------------DRKTPALVEALKDRHVKYIACGSNYSAA 623 (1065)
Q Consensus 558 ~V~~Ia~G~~Ht~vLT~~G~VytWG~n~~GQLG~Gd~~--------------d~~~P~~V~~l~~~~V~~IacG~~hT~a 623 (1065)
.|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.|+.+. .|++|+||.+|++|
T Consensus 314 ~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~a 391 (473)
T 3of7_A 314 VIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVA 391 (473)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEE
T ss_pred CEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--CEEEEEECCCEEEE
T ss_conf 3899986788699993898299987899874188844466531004578602621670047877--53799857876999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 863101233000013322244434556644446883
Q 001504 624 ICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGL 659 (1065)
Q Consensus 624 I~~~kwv~~~d~s~C~~C~~~Fsf~rkrH~C~~CG~ 659 (1065)
|+.. +..|.|+...+.+...|.
T Consensus 392 l~~~--------------G~vy~wG~n~~GqLG~g~ 413 (473)
T 3of7_A 392 VAQN--------------GIAYSWGFGETYAVGLGP 413 (473)
T ss_dssp EETT--------------SCEEEEECCTTCTTCCCS
T ss_pred EECC--------------CCEEEEECCCCCCCCCCC
T ss_conf 9689--------------848996289898887999
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=479.79 Aligned_cols=323 Identities=23% Similarity=0.370 Sum_probs=281.9
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC-CCEECCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEEC
Q ss_conf 898899995697699997199099992899996678999-6500227730158997799994798599999289599957
Q 001504 282 VLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVG-KDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWG 360 (1065)
Q Consensus 282 ~~~V~~Ia~G~~Ht~~LT~~G~Vy~wG~n~~GqLG~g~~-~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG 360 (1065)
..++++|+||..|+++|+.+|+||+||.|.+||||++.. .....|..|+.+ .+|++|+||.+|+++|+++|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l--~~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGI--PDAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSC--SSEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCC--CCCEEEEECCCEEEEEECCCEEEEEE
T ss_conf 1203688637765331669971999869987778999987567687675688--98449950789489995799499867
Q ss_pred CCCCCCCCCCCCCCCC--EEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEC--CCCCCCCCCCCCCCCCCEEE
Q ss_conf 9988997678999864--0000122389889839999825973899942991999817--99875578999873345353
Q 001504 361 DGTHNAGLLGHGTDVS--HWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGD--GTFGVLGHGDRKNVSYPREV 436 (1065)
Q Consensus 361 ~n~~~~GqLG~g~~~~--~~~P~~I~~~l~~~~Iv~Ia~G~~Htialts~G~VytwG~--N~~GQLG~g~~~~~~~P~~V 436 (1065)
.| .+||||++.... ...|.+|..+ .+|++|+||..|+++|+++|+||+||. |.+||||++.......|.++
T Consensus 101 ~n--~~GqLG~~~~~~~~~~~P~~v~~~---~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~ 175 (423)
T 3mvd_K 101 CN--DEGALGRDTSEDGSESKPDLIDLP---GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL 175 (423)
T ss_dssp CC--SSSTTCSCCCSTTSSSSCEECCCS---SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES
T ss_pred CC--CCCCCCCCCCCCCCCCCCEEECCC---CCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 89--985899987678656577597479---9789998486828999179969997698898998674778887234696
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCC-----------CCCCCCEEECCCCCC
Q ss_conf 036642199984178548999986530444323799199951899988899999-----------996452573456789
Q 001504 437 ESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDK-----------EPRLKPTCVPALIDY 505 (1065)
Q Consensus 437 ~~l~~~~V~~VaaG~~Ht~alve~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~-----------~~~~~Pt~V~~l~~~ 505 (1065)
+.+.+|++|+||.+|++|| +.+|+||+||.|.+||||++.. .....|+.|..+...
T Consensus 176 --~~~~~i~~va~G~~hs~al-----------t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~ 242 (423)
T 3mvd_K 176 --MEGTVCCSIASGADHLVIL-----------TTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK 242 (423)
T ss_dssp --STTCCEEEEEECSSEEEEE-----------ETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCC
T ss_pred --CCCCCEEEEECCCCEEEEE-----------ECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf --6998589995389749999-----------269809996278678547776434454333453335687688406886
Q ss_pred CEEEEEECCCEEEEE-ECCCCEEEEECCCCCCCCCCCC-CCCCCEEEECCCCCCCEEEEEECCCCCEEEECCCEEEEEEC
Q ss_conf 789999518789999-5499099993899778899999-99754453103579870689973784224506983999938
Q 001504 506 NFHKVACGHSLTVGL-TTSGHVFTMGSTVYGQLGNPNA-DGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGK 583 (1065)
Q Consensus 506 ~I~~Ia~G~~htvaL-T~dG~Vy~wGsn~~GQLG~~~~-~~~~P~~V~~~l~~~~V~~Ia~G~~Ht~vLT~~G~VytWG~ 583 (1065)
+|.+|+||.+|++++ +.+|+||+||.|.+||||.+.. ....+.++... ...|++|+||.+|+++|+++|+||+||.
T Consensus 243 ~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--~~~v~~ia~G~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 243 PFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE--LKDIRHIAGGQHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp CEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC--CCSEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC--CCCEEEEECCCCEEEEEECCCCEEEEEC
T ss_conf 27999979967999988999499974999876799998874146448707--8874899724676999958993999979
Q ss_pred CCCCCCCCCCCCCC-CCCEEECCCCCCCEEEEECCCCCCCEEEEE
Q ss_conf 99997889999888-553895124575179973189853108631
Q 001504 584 GANGRLGHGDVEDR-KTPALVEALKDRHVKYIACGSNYSAAICLH 627 (1065)
Q Consensus 584 n~~GQLG~Gd~~d~-~~P~~V~~l~~~~V~~IacG~~hT~aI~~~ 627 (1065)
|.+||||+++..+. ..|++|+.+.+ .|++|+||.+|++||+..
T Consensus 321 n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~ 364 (423)
T 3mvd_K 321 PEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID 364 (423)
T ss_dssp CGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCC-CEEEEECCCCEEEEECCC
T ss_conf 98888798986665468667214799-779997689869999589
No 10
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=473.20 Aligned_cols=318 Identities=28% Similarity=0.482 Sum_probs=274.6
Q ss_pred EEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCC-EECCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCC
Q ss_conf 999569769999719909999289999667899965-0022773015899779999479859999928959995799889
Q 001504 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKD-IVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHN 365 (1065)
Q Consensus 287 ~Ia~G~~Ht~~LT~~G~Vy~wG~n~~GqLG~g~~~~-~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~n~~~ 365 (1065)
.++.+..|+++|+.+|+||+||.|.+||||++...+ ...|++|..+ .+|++|+||.+|+++|+++|+||+||.| .
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n--~ 87 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCN--D 87 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECC--T
T ss_pred HHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCC--CCEEEEEECCCEEEEECCCCCEEEEECC--C
T ss_conf 34420442040068986899778989837989986430465671688--9869998677758999479989998899--9
Q ss_pred CCCCCCCCC--CCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEC--CCCCCCCCCCCCCC-CCCEEECCCC
Q ss_conf 976789998--640000122389889839999825973899942991999817--99875578999873-3453530366
Q 001504 366 AGLLGHGTD--VSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGD--GTFGVLGHGDRKNV-SYPREVESLS 440 (1065)
Q Consensus 366 ~GqLG~g~~--~~~~~P~~I~~~l~~~~Iv~Ia~G~~Htialts~G~VytwG~--N~~GQLG~g~~~~~-~~P~~V~~l~ 440 (1065)
+||||++.. .....|.+|.. ..+|++|+||.+|+++|+++|+||+||. |.+||||+++.... ..|.+| +.
T Consensus 88 ~GqLG~~~~~~~~~~~P~~v~l---~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~ 162 (413)
T 1a12_A 88 EGALGRDTSVEGSEMVPGKVEL---QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QL 162 (413)
T ss_dssp TSTTCSCCCSTTGGGSCEECCC---CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CC
T ss_pred CCCCCCCCCCCCCCCCCEEECC---CCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CC
T ss_conf 8877988888753458747538---875899966887379984899489943776899863767866446678796--18
Q ss_pred CCEEEEEECCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCC-----------CCCCCEEECCC-----CC
Q ss_conf 421999841785489999865304443237991999518999888999999-----------96452573456-----78
Q 001504 441 GLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKE-----------PRLKPTCVPAL-----ID 504 (1065)
Q Consensus 441 ~~~V~~VaaG~~Ht~alve~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~-----------~~~~Pt~V~~l-----~~ 504 (1065)
..+|++|+||.+|+++| +.+|+||+||.|.+||||++... ....|+.|... ..
T Consensus 163 ~~~i~~ia~G~~hs~al-----------t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~ 231 (413)
T 1a12_A 163 DVPVVKVASGNDHLVML-----------TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 231 (413)
T ss_dssp SSCEEEEEECSSEEEEE-----------ETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSB
T ss_pred CCCEEEEEECCCEEEEE-----------CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 99779998467618998-----------5899889833898886688753334555545532244674576314566678
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCC-CCCCEEEECCCCC--CCEEEEEECCCCCEEEECCCEEEEE
Q ss_conf 978999951878999954990999938997788999999-9754453103579--8706899737842245069839999
Q 001504 505 YNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNAD-GKLPCLVEDKLAG--ESVEEIACGAYHVAVLTSRNEVYTW 581 (1065)
Q Consensus 505 ~~I~~Ia~G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~-~~~P~~V~~~l~~--~~V~~Ia~G~~Ht~vLT~~G~VytW 581 (1065)
.+|++|+||.+|++||+++|+||+||.|.+||||.+... ...|..+.. +.+ ..|++|+||.+|+++|+++|+||+|
T Consensus 232 ~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~-l~~~~~~v~~ia~G~~hs~al~~~G~v~~w 310 (413)
T 1a12_A 232 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS-FKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 310 (413)
T ss_dssp CCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGG-GCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECHH-CCCCCCEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 5489997078879999689979998499876777999876356677010-158873299995052458999079989986
Q ss_pred ECCCCCCCCCC-CCCCCCCCEEECCCCCCCEEEEECCCCCCCEEEEE
Q ss_conf 38999978899-99888553895124575179973189853108631
Q 001504 582 GKGANGRLGHG-DVEDRKTPALVEALKDRHVKYIACGSNYSAAICLH 627 (1065)
Q Consensus 582 G~n~~GQLG~G-d~~d~~~P~~V~~l~~~~V~~IacG~~hT~aI~~~ 627 (1065)
|.|.+||||+| +..+...|++|+.+. .|++|+||.+|++||+..
T Consensus 311 G~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~ 355 (413)
T 1a12_A 311 GRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKD 355 (413)
T ss_dssp ECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETT
T ss_pred ECCCCCCCCCCCCCCCCCCCEEECCCC--CEEEEEECCCEEEEEECC
T ss_conf 489888668999886366777922667--625999775647999489
Done!