Query 001505
Match_columns 1065
No_of_seqs 551 out of 3932
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 7E-182 1E-186 1693.1 101.0 852 201-1063 122-996 (1381)
2 PLN03130 ABC transporter C fam 100.0 7E-140 2E-144 1384.8 121.6 1025 7-1057 29-1083(1622)
3 PLN03232 ABC transporter C fam 100.0 3E-138 6E-143 1370.3 121.6 1025 8-1057 30-1080(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 1E-130 2E-135 1300.5 122.3 846 199-1056 199-1134(1522)
5 TIGR01271 CFTR_protein cystic 100.0 3E-127 7E-132 1262.9 103.2 849 200-1057 2-1055(1490)
6 PTZ00243 ABC transporter; Prov 100.0 1E-116 2E-121 1163.7 101.8 853 199-1057 57-1128(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 1.7E-84 3.8E-89 796.5 70.0 754 274-1049 27-833 (1228)
8 KOG0058 Peptide exporter, ABC 100.0 1E-82 2.2E-87 743.8 63.6 544 266-823 138-706 (716)
9 PRK11174 cysteine/glutathione 100.0 4.6E-79 9.9E-84 748.8 72.4 543 264-823 11-586 (588)
10 COG2274 SunT ABC-type bacterio 100.0 9.3E-78 2E-82 730.7 71.5 544 263-821 142-708 (709)
11 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 8E-75 1.7E-79 722.4 73.8 538 265-820 126-684 (686)
12 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-74 2.4E-79 721.4 72.7 535 268-817 154-710 (711)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.6E-75 1.6E-79 725.6 70.8 538 265-818 144-709 (710)
14 KOG0055 Multidrug/pheromone ex 100.0 4.3E-75 9.4E-80 713.8 65.2 541 271-822 660-1226(1228)
15 PTZ00265 multidrug resistance 100.0 1.3E-72 2.8E-77 739.3 92.1 758 266-1038 51-979 (1466)
16 TIGR03375 type_I_sec_LssB type 100.0 3.1E-74 6.7E-79 718.0 72.7 531 264-808 136-688 (694)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 5.3E-73 1.2E-77 708.4 72.5 536 266-819 147-707 (708)
18 PRK11176 lipid transporter ATP 100.0 1.3E-72 2.8E-77 691.1 72.3 542 266-821 16-579 (582)
19 PRK10790 putative multidrug tr 100.0 3.8E-72 8.3E-77 687.8 75.7 541 266-822 14-576 (592)
20 TIGR02203 MsbA_lipidA lipid A 100.0 6.1E-72 1.3E-76 684.0 72.5 541 266-820 5-567 (571)
21 COG1132 MdlB ABC-type multidru 100.0 1.7E-71 3.7E-76 678.5 71.3 535 268-822 9-565 (567)
22 PRK11160 cysteine/glutathione 100.0 9.2E-71 2E-75 671.6 72.2 538 268-819 9-572 (574)
23 TIGR02204 MsbA_rel ABC transpo 100.0 1.7E-70 3.6E-75 671.8 71.8 544 265-820 8-574 (576)
24 PRK13657 cyclic beta-1,2-gluca 100.0 3.4E-70 7.4E-75 669.8 73.5 535 268-821 12-570 (588)
25 TIGR02868 CydC thiol reductant 100.0 2.4E-70 5.2E-75 663.5 67.9 501 267-780 5-529 (529)
26 TIGR01846 type_I_sec_HlyB type 100.0 5E-70 1.1E-74 679.8 72.6 542 265-820 129-691 (694)
27 COG4988 CydD ABC-type transpor 100.0 1.2E-69 2.7E-74 624.1 66.2 524 279-822 4-556 (559)
28 PRK10789 putative multidrug tr 100.0 1.5E-69 3.3E-74 660.6 71.1 526 285-822 5-551 (569)
29 TIGR01842 type_I_sec_PrtD type 100.0 5.8E-69 1.2E-73 652.8 69.9 521 271-808 2-542 (544)
30 PTZ00265 multidrug resistance 100.0 4.7E-69 1E-73 705.7 72.5 539 270-821 820-1465(1466)
31 TIGR01192 chvA glucan exporter 100.0 5.2E-68 1.1E-72 648.3 73.7 535 268-821 12-570 (585)
32 TIGR02857 CydD thiol reductant 100.0 1.7E-67 3.6E-72 638.7 67.8 506 274-792 2-529 (529)
33 KOG0057 Mitochondrial Fe/S clu 100.0 9.1E-68 2E-72 598.2 58.0 522 288-821 43-586 (591)
34 TIGR00957 MRP_assoc_pro multi 100.0 5.6E-67 1.2E-71 693.2 71.9 466 344-820 1031-1519(1522)
35 PLN03130 ABC transporter C fam 100.0 3.1E-66 6.8E-71 685.0 72.0 469 343-821 978-1474(1622)
36 KOG0056 Heavy metal exporter H 100.0 5.5E-69 1.2E-73 592.6 33.2 527 280-823 220-776 (790)
37 PLN03232 ABC transporter C fam 100.0 2.3E-65 4.9E-70 677.0 69.8 468 344-822 976-1472(1495)
38 COG4987 CydC ABC-type transpor 100.0 7.9E-65 1.7E-69 574.3 60.5 540 265-819 7-571 (573)
39 PTZ00243 ABC transporter; Prov 100.0 1.3E-64 2.7E-69 669.0 70.8 462 351-821 1031-1546(1560)
40 TIGR01271 CFTR_protein cystic 100.0 2.8E-61 6.1E-66 637.0 71.8 467 344-823 951-1454(1490)
41 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.8E-61 2.1E-65 581.2 63.4 509 268-800 10-551 (555)
42 COG4618 ArpD ABC-type protease 100.0 6.1E-61 1.3E-65 537.4 54.0 527 263-808 11-560 (580)
43 COG5265 ATM1 ABC-type transpor 100.0 1.5E-61 3.3E-66 531.2 39.1 454 353-818 17-495 (497)
44 PRK10522 multidrug transporter 100.0 2E-58 4.4E-63 560.6 63.7 508 265-805 3-536 (547)
45 KOG0054 Multidrug resistance-a 100.0 1.1E-57 2.3E-62 573.7 60.1 464 345-820 885-1374(1381)
46 TIGR00954 3a01203 Peroxysomal 100.0 3.5E-55 7.5E-60 540.1 61.1 500 276-793 97-652 (659)
47 PRK14257 phosphate ABC transpo 100.0 1E-48 2.2E-53 443.8 25.3 260 525-808 23-313 (329)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.2E-45 7E-50 405.2 25.8 222 590-821 2-237 (275)
49 COG1126 GlnQ ABC-type polar am 100.0 5.2E-42 1.1E-46 350.2 21.8 198 590-808 2-225 (240)
50 cd03291 ABCC_CFTR1 The CFTR su 100.0 6.1E-41 1.3E-45 372.4 29.6 238 565-816 16-254 (282)
51 cd03252 ABCC_Hemolysin The ABC 100.0 7.4E-41 1.6E-45 364.4 25.6 219 591-818 1-234 (237)
52 cd03288 ABCC_SUR2 The SUR doma 100.0 8.2E-41 1.8E-45 368.4 26.1 224 588-819 17-254 (257)
53 cd03250 ABCC_MRP_domain1 Domai 100.0 4.6E-41 1E-45 357.7 23.0 200 591-796 1-204 (204)
54 cd03253 ABCC_ATM1_transporter 100.0 6.7E-40 1.4E-44 356.6 25.8 217 591-817 1-232 (236)
55 COG1125 OpuBA ABC-type proline 100.0 8.8E-41 1.9E-45 347.1 17.8 205 591-816 2-233 (309)
56 COG1116 TauB ABC-type nitrate/ 100.0 1.6E-40 3.5E-45 349.7 19.7 188 590-798 3-212 (248)
57 cd03251 ABCC_MsbA MsbA is an e 100.0 5.5E-40 1.2E-44 356.9 24.3 215 591-814 1-230 (234)
58 cd03254 ABCC_Glucan_exporter_l 100.0 6.5E-40 1.4E-44 355.1 24.4 210 590-808 2-226 (229)
59 cd03244 ABCC_MRP_domain2 Domai 100.0 8.9E-40 1.9E-44 352.1 24.3 205 590-802 2-220 (221)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.5E-39 3.3E-44 354.4 25.0 218 591-816 1-233 (238)
61 COG1135 AbcC ABC-type metal io 100.0 5.1E-40 1.1E-44 351.6 19.5 204 591-810 2-233 (339)
62 COG3839 MalK ABC-type sugar tr 100.0 1.6E-39 3.4E-44 361.6 20.6 201 590-811 3-226 (338)
63 cd03245 ABCC_bacteriocin_expor 100.0 6.1E-39 1.3E-43 345.4 24.3 204 590-801 2-220 (220)
64 TIGR01186 proV glycine betaine 100.0 2E-39 4.3E-44 370.7 20.8 191 611-814 6-225 (363)
65 COG1117 PstB ABC-type phosphat 100.0 1.7E-39 3.7E-44 330.0 16.6 203 589-808 6-237 (253)
66 COG3840 ThiQ ABC-type thiamine 100.0 2.3E-39 5.1E-44 320.6 17.1 196 591-808 2-219 (231)
67 COG4178 ABC-type uncharacteriz 100.0 2.4E-35 5.2E-40 346.3 53.1 438 339-793 107-587 (604)
68 COG3842 PotA ABC-type spermidi 100.0 3.5E-39 7.6E-44 360.7 18.7 205 589-814 4-232 (352)
69 PRK11650 ugpC glycerol-3-phosp 100.0 1.6E-38 3.5E-43 364.0 24.2 202 590-811 3-227 (356)
70 PRK13631 cbiO cobalt transport 100.0 2.7E-38 5.8E-43 357.7 25.3 206 588-808 19-265 (320)
71 COG1120 FepC ABC-type cobalami 100.0 1.2E-38 2.6E-43 342.2 20.7 198 590-808 2-228 (258)
72 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2E-38 4.4E-43 338.6 21.7 198 589-808 3-227 (254)
73 cd03290 ABCC_SUR1_N The SUR do 100.0 2.9E-38 6.2E-43 339.7 22.7 197 592-796 2-218 (218)
74 TIGR02314 ABC_MetN D-methionin 100.0 2.7E-38 6E-43 359.4 23.3 201 591-808 2-230 (343)
75 COG1118 CysA ABC-type sulfate/ 100.0 9.1E-39 2E-43 341.0 17.7 204 590-814 2-233 (345)
76 COG1136 SalX ABC-type antimicr 100.0 3.9E-38 8.5E-43 332.0 22.2 193 591-799 2-222 (226)
77 cd03261 ABC_Org_Solvent_Resist 100.0 3.2E-38 6.9E-43 343.3 21.4 197 591-808 1-226 (235)
78 PRK11432 fbpC ferric transport 100.0 5.8E-38 1.3E-42 358.5 22.8 202 589-811 5-229 (351)
79 COG1127 Ttg2A ABC-type transpo 100.0 8.6E-38 1.9E-42 324.1 21.8 210 588-818 6-245 (263)
80 cd03260 ABC_PstB_phosphate_tra 100.0 4.2E-38 9.2E-43 340.5 20.3 197 591-806 1-227 (227)
81 PRK14269 phosphate ABC transpo 100.0 1.3E-37 2.8E-42 340.8 23.6 202 590-808 2-230 (246)
82 PRK13650 cbiO cobalt transport 100.0 1.1E-37 2.3E-42 347.5 23.1 201 590-808 4-229 (279)
83 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.8E-37 4E-42 330.8 23.7 188 589-802 5-206 (207)
84 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-37 2.8E-42 336.4 22.7 203 588-797 9-226 (226)
85 COG1122 CbiO ABC-type cobalt t 100.0 7.1E-38 1.5E-42 336.2 19.9 199 590-808 3-228 (235)
86 TIGR00972 3a0107s01c2 phosphat 100.0 1.9E-37 4E-42 339.8 23.6 201 591-808 2-232 (247)
87 PRK14242 phosphate transporter 100.0 1.8E-37 3.9E-42 341.1 23.2 203 589-808 5-237 (253)
88 cd03296 ABC_CysA_sulfate_impor 100.0 2.1E-37 4.6E-42 337.7 23.2 197 591-808 3-226 (239)
89 PRK13637 cbiO cobalt transport 100.0 1.5E-37 3.3E-42 347.5 22.6 205 590-808 2-234 (287)
90 PRK09452 potA putrescine/sperm 100.0 1.7E-37 3.6E-42 357.0 23.4 202 589-811 13-237 (375)
91 PRK13634 cbiO cobalt transport 100.0 1.8E-37 4E-42 347.3 23.0 203 591-808 3-235 (290)
92 PRK14273 phosphate ABC transpo 100.0 4.1E-37 8.9E-42 338.5 24.8 203 589-808 6-238 (254)
93 TIGR03265 PhnT2 putative 2-ami 100.0 1.6E-37 3.6E-42 355.3 22.5 204 590-814 4-230 (353)
94 PRK13643 cbiO cobalt transport 100.0 3.1E-37 6.7E-42 345.2 23.8 203 591-808 2-233 (288)
95 cd03263 ABC_subfamily_A The AB 100.0 3.3E-37 7.1E-42 331.9 22.4 197 591-806 1-219 (220)
96 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-37 4.7E-42 354.8 22.1 201 589-810 4-230 (362)
97 PRK13647 cbiO cobalt transport 100.0 3.1E-37 6.7E-42 342.9 22.4 198 590-807 4-226 (274)
98 PRK11000 maltose/maltodextrin 100.0 3.1E-37 6.6E-42 355.7 23.1 198 590-808 3-223 (369)
99 PRK10851 sulfate/thiosulfate t 100.0 4E-37 8.6E-42 352.2 23.7 198 591-809 3-227 (353)
100 cd03219 ABC_Mj1267_LivG_branch 100.0 3.3E-37 7.2E-42 335.5 22.0 201 591-808 1-232 (236)
101 PRK10744 pstB phosphate transp 100.0 6.4E-37 1.4E-41 338.1 24.4 204 588-808 11-244 (260)
102 TIGR02315 ABC_phnC phosphonate 100.0 4.2E-37 9E-42 336.2 22.3 197 591-807 2-234 (243)
103 PRK14250 phosphate ABC transpo 100.0 8.1E-37 1.8E-41 333.5 24.5 199 590-808 3-221 (241)
104 TIGR00960 3a0501s02 Type II (G 100.0 2.7E-37 5.9E-42 331.6 20.2 188 591-797 2-216 (216)
105 cd03259 ABC_Carb_Solutes_like 100.0 3.1E-37 6.8E-42 330.5 20.5 190 591-801 1-213 (213)
106 PRK13646 cbiO cobalt transport 100.0 5.2E-37 1.1E-41 343.1 23.0 204 590-808 2-235 (286)
107 PRK13635 cbiO cobalt transport 100.0 6.4E-37 1.4E-41 341.1 23.5 200 590-808 5-229 (279)
108 cd03256 ABC_PhnC_transporter A 100.0 6E-37 1.3E-41 334.4 22.3 198 591-808 1-234 (241)
109 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.4E-37 7.4E-42 341.7 20.6 185 611-808 37-250 (269)
110 PRK14251 phosphate ABC transpo 100.0 7.6E-37 1.6E-41 335.8 22.9 202 590-808 4-235 (251)
111 PRK11153 metN DL-methionine tr 100.0 6.5E-37 1.4E-41 350.1 23.0 201 591-808 2-230 (343)
112 PRK14239 phosphate transporter 100.0 9.2E-37 2E-41 335.3 23.3 202 590-808 5-236 (252)
113 PRK14274 phosphate ABC transpo 100.0 1E-36 2.2E-41 336.3 23.4 202 590-808 12-243 (259)
114 PRK14245 phosphate ABC transpo 100.0 8E-37 1.7E-41 335.4 22.5 202 590-808 3-234 (250)
115 cd03226 ABC_cobalt_CbiO_domain 100.0 4.7E-37 1E-41 327.1 20.0 187 592-798 1-205 (205)
116 cd03265 ABC_DrrA DrrA is the A 100.0 6.9E-37 1.5E-41 329.5 21.3 195 591-806 1-219 (220)
117 COG1124 DppF ABC-type dipeptid 100.0 8E-37 1.7E-41 318.7 20.9 210 590-816 3-239 (252)
118 COG4615 PvdE ABC-type sideroph 100.0 4.4E-34 9.5E-39 311.2 43.0 499 266-800 4-529 (546)
119 cd03293 ABC_NrtD_SsuB_transpor 100.0 6.3E-37 1.4E-41 329.8 20.8 196 591-803 1-218 (220)
120 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.2E-37 9.1E-42 330.6 19.3 190 591-797 1-218 (218)
121 PRK14235 phosphate transporter 100.0 1.5E-36 3.2E-41 336.4 23.7 204 588-808 17-251 (267)
122 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.3E-36 2.9E-41 330.8 22.4 197 591-808 2-221 (236)
123 PRK13636 cbiO cobalt transport 100.0 1.6E-36 3.4E-41 338.7 23.5 199 590-808 5-231 (283)
124 PRK13640 cbiO cobalt transport 100.0 1.2E-36 2.6E-41 339.5 22.4 201 589-808 4-232 (282)
125 PRK13651 cobalt transporter AT 100.0 1.5E-36 3.3E-41 341.4 23.4 203 591-808 3-254 (305)
126 PRK14268 phosphate ABC transpo 100.0 1.4E-36 3.1E-41 335.0 22.5 203 589-808 11-242 (258)
127 PRK14240 phosphate transporter 100.0 2.3E-36 4.9E-41 331.8 24.0 202 590-808 3-234 (250)
128 cd03264 ABC_drug_resistance_li 100.0 1E-36 2.2E-41 326.0 20.6 189 591-801 1-211 (211)
129 PRK14237 phosphate transporter 100.0 1.7E-36 3.8E-41 335.8 23.2 204 588-808 18-251 (267)
130 cd03247 ABCC_cytochrome_bd The 100.0 1.2E-36 2.6E-41 316.8 20.5 165 591-801 1-178 (178)
131 cd03258 ABC_MetN_methionine_tr 100.0 1.7E-36 3.6E-41 329.4 22.3 201 591-808 2-230 (233)
132 PRK13644 cbiO cobalt transport 100.0 1.8E-36 4E-41 336.7 23.2 198 591-808 2-224 (274)
133 cd03301 ABC_MalK_N The N-termi 100.0 1.2E-36 2.7E-41 325.8 21.0 190 591-801 1-213 (213)
134 PRK11629 lolD lipoprotein tran 100.0 1.4E-36 3.1E-41 329.9 21.7 195 590-802 5-228 (233)
135 PRK14249 phosphate ABC transpo 100.0 2.6E-36 5.6E-41 331.6 23.9 202 590-808 4-235 (251)
136 PRK14248 phosphate ABC transpo 100.0 1.8E-36 3.9E-41 336.0 22.8 203 589-808 20-252 (268)
137 cd03268 ABC_BcrA_bacitracin_re 100.0 1.7E-36 3.7E-41 323.6 21.8 190 591-801 1-208 (208)
138 PRK14236 phosphate transporter 100.0 2E-36 4.4E-41 336.2 23.2 204 588-808 23-256 (272)
139 cd03224 ABC_TM1139_LivF_branch 100.0 1.8E-36 4E-41 326.5 21.9 198 591-808 1-221 (222)
140 PRK14270 phosphate ABC transpo 100.0 2.7E-36 5.9E-41 331.4 23.6 203 589-808 3-235 (251)
141 PRK11607 potG putrescine trans 100.0 1.6E-36 3.6E-41 349.4 22.8 202 589-811 18-242 (377)
142 PRK14244 phosphate ABC transpo 100.0 1.7E-36 3.8E-41 333.0 22.0 201 591-808 6-237 (251)
143 cd03298 ABC_ThiQ_thiamine_tran 100.0 2E-36 4.4E-41 323.7 21.8 188 591-801 1-211 (211)
144 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.9E-36 4E-41 330.9 21.7 200 591-808 1-225 (242)
145 cd03235 ABC_Metallic_Cations A 100.0 1.6E-36 3.5E-41 325.0 20.8 188 592-801 1-213 (213)
146 PRK13642 cbiO cobalt transport 100.0 2.8E-36 6.1E-41 335.8 23.4 201 590-808 4-229 (277)
147 PRK13632 cbiO cobalt transport 100.0 2.8E-36 6E-41 334.9 23.2 201 589-808 6-231 (271)
148 PRK14261 phosphate ABC transpo 100.0 3.4E-36 7.3E-41 331.0 23.5 202 590-808 6-237 (253)
149 cd03266 ABC_NatA_sodium_export 100.0 2.4E-36 5.2E-41 324.7 21.8 194 591-801 2-218 (218)
150 PRK14267 phosphate ABC transpo 100.0 4E-36 8.6E-41 330.5 23.6 202 590-808 4-237 (253)
151 PRK14247 phosphate ABC transpo 100.0 4.3E-36 9.3E-41 329.6 23.8 202 590-808 3-234 (250)
152 TIGR02211 LolD_lipo_ex lipopro 100.0 2.3E-36 4.9E-41 325.6 21.2 191 591-798 2-220 (221)
153 PRK14238 phosphate transporter 100.0 4E-36 8.8E-41 333.5 23.7 203 589-808 23-255 (271)
154 PRK13633 cobalt transporter AT 100.0 3.3E-36 7.3E-41 335.7 23.1 204 590-808 4-233 (280)
155 PRK11124 artP arginine transpo 100.0 4.1E-36 9E-41 328.2 23.3 197 591-808 3-230 (242)
156 PRK14243 phosphate transporter 100.0 4.6E-36 1E-40 331.9 23.9 203 589-808 9-248 (264)
157 PRK11247 ssuB aliphatic sulfon 100.0 3.4E-36 7.4E-41 330.9 22.6 195 589-804 11-219 (257)
158 PRK13648 cbiO cobalt transport 100.0 3.8E-36 8.3E-41 333.5 23.0 200 590-808 7-231 (269)
159 TIGR03411 urea_trans_UrtD urea 100.0 3.7E-36 8.1E-41 328.5 22.6 197 591-808 3-231 (242)
160 cd03218 ABC_YhbG The ABC trans 100.0 3.3E-36 7.2E-41 326.8 21.9 197 591-808 1-222 (232)
161 PRK14253 phosphate ABC transpo 100.0 4E-36 8.6E-41 329.7 22.8 202 590-808 3-233 (249)
162 PRK11831 putative ABC transpor 100.0 4E-36 8.7E-41 333.3 23.0 199 589-808 6-233 (269)
163 PRK13645 cbiO cobalt transport 100.0 3.4E-36 7.3E-41 337.3 22.5 203 589-808 5-240 (289)
164 PRK14259 phosphate ABC transpo 100.0 5.1E-36 1.1E-40 332.3 23.7 203 589-808 12-253 (269)
165 PRK14252 phosphate ABC transpo 100.0 5.5E-36 1.2E-40 331.6 23.9 204 588-808 14-249 (265)
166 PRK10247 putative ABC transpor 100.0 2.7E-36 5.9E-41 325.9 21.0 196 589-804 6-223 (225)
167 PRK10619 histidine/lysine/argi 100.0 4.5E-36 9.7E-41 330.8 23.1 200 589-808 4-241 (257)
168 PRK14262 phosphate ABC transpo 100.0 4.3E-36 9.4E-41 329.6 22.8 202 590-808 3-234 (250)
169 PRK09493 glnQ glutamine ABC tr 100.0 4.6E-36 1E-40 327.4 22.8 197 591-808 2-225 (240)
170 PRK13649 cbiO cobalt transport 100.0 4.9E-36 1.1E-40 334.6 23.4 203 591-808 3-234 (280)
171 cd03292 ABC_FtsE_transporter F 100.0 2.4E-36 5.3E-41 323.7 20.0 187 591-797 1-214 (214)
172 cd03223 ABCD_peroxisomal_ALDP 100.0 3.5E-36 7.5E-41 309.7 20.1 160 591-795 1-163 (166)
173 COG3638 ABC-type phosphate/pho 100.0 2.9E-36 6.3E-41 311.9 19.5 207 590-819 3-245 (258)
174 PRK14254 phosphate ABC transpo 100.0 7.9E-36 1.7E-40 333.2 24.6 204 588-808 37-269 (285)
175 TIGR03410 urea_trans_UrtE urea 100.0 2.4E-36 5.2E-41 327.5 19.8 198 591-808 1-221 (230)
176 cd03257 ABC_NikE_OppD_transpor 100.0 3.5E-36 7.5E-41 325.6 20.7 198 591-801 2-228 (228)
177 PRK10575 iron-hydroxamate tran 100.0 5.3E-36 1.2E-40 331.6 22.6 199 589-808 10-237 (265)
178 PRK10771 thiQ thiamine transpo 100.0 9.9E-36 2.1E-40 323.1 24.2 195 591-808 2-219 (232)
179 TIGR03005 ectoine_ehuA ectoine 100.0 6.8E-36 1.5E-40 328.4 23.2 197 591-808 1-236 (252)
180 PRK14256 phosphate ABC transpo 100.0 8.4E-36 1.8E-40 327.7 23.8 203 589-808 3-236 (252)
181 TIGR03415 ABC_choXWV_ATP choli 100.0 4.3E-36 9.2E-41 344.7 22.3 192 611-815 37-261 (382)
182 PRK13639 cbiO cobalt transport 100.0 5E-36 1.1E-40 333.5 22.2 198 591-808 2-226 (275)
183 PRK14266 phosphate ABC transpo 100.0 7E-36 1.5E-40 327.9 23.1 202 590-808 3-234 (250)
184 PRK13641 cbiO cobalt transport 100.0 6.5E-36 1.4E-40 334.5 23.2 204 590-808 2-234 (287)
185 PRK11264 putative amino-acid A 100.0 7.9E-36 1.7E-40 327.5 23.3 198 590-808 3-233 (250)
186 TIGR02769 nickel_nikE nickel i 100.0 9.9E-36 2.1E-40 329.5 24.2 206 591-808 3-240 (265)
187 PRK10070 glycine betaine trans 100.0 5.4E-36 1.2E-40 346.2 22.7 206 590-808 4-254 (400)
188 cd03269 ABC_putative_ATPase Th 100.0 5.1E-36 1.1E-40 320.3 20.8 190 591-801 1-210 (210)
189 PRK14271 phosphate ABC transpo 100.0 6.9E-36 1.5E-40 332.3 22.6 203 589-808 20-251 (276)
190 TIGR02673 FtsE cell division A 100.0 4.2E-36 9.1E-41 321.9 20.0 186 591-796 2-214 (214)
191 PRK10584 putative ABC transpor 100.0 9E-36 1.9E-40 322.6 22.7 194 589-800 5-227 (228)
192 PRK14264 phosphate ABC transpo 100.0 9.3E-36 2E-40 335.8 23.6 203 589-808 44-289 (305)
193 PRK13652 cbiO cobalt transport 100.0 9.9E-36 2.2E-40 331.4 23.5 199 590-808 3-227 (277)
194 cd03300 ABC_PotA_N PotA is an 100.0 7.5E-36 1.6E-40 324.0 21.9 197 591-808 1-220 (232)
195 PRK13537 nodulation ABC transp 100.0 9E-36 1.9E-40 335.7 23.2 199 589-808 6-227 (306)
196 TIGR01288 nodI ATP-binding ABC 100.0 1.2E-35 2.6E-40 334.8 24.0 199 589-808 3-224 (303)
197 PRK15079 oligopeptide ABC tran 100.0 1.4E-35 3E-40 336.8 24.0 216 589-816 7-259 (331)
198 PRK11231 fecE iron-dicitrate t 100.0 1.3E-35 2.8E-40 326.7 23.1 197 591-808 3-227 (255)
199 PRK14275 phosphate ABC transpo 100.0 1.6E-35 3.4E-40 331.1 23.8 204 588-808 37-270 (286)
200 PRK10253 iron-enterobactin tra 100.0 1.7E-35 3.8E-40 327.5 23.7 200 588-808 5-233 (265)
201 PRK13638 cbiO cobalt transport 100.0 1.8E-35 4E-40 328.4 23.7 197 591-808 2-225 (271)
202 PRK14263 phosphate ABC transpo 100.0 2.4E-35 5.2E-40 325.4 24.5 203 589-808 7-245 (261)
203 TIGR00968 3a0106s01 sulfate AB 100.0 1.1E-35 2.3E-40 323.9 21.3 197 591-808 1-220 (237)
204 cd03225 ABC_cobalt_CbiO_domain 100.0 8E-36 1.7E-40 319.0 20.0 186 592-796 1-211 (211)
205 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-35 2.6E-40 343.5 23.0 198 590-808 3-228 (402)
206 PRK14272 phosphate ABC transpo 100.0 2.6E-35 5.6E-40 323.9 24.4 202 590-808 4-236 (252)
207 PRK13548 hmuV hemin importer A 100.0 2.3E-35 5E-40 325.2 23.8 197 591-808 3-230 (258)
208 PRK11300 livG leucine/isoleuci 100.0 1.7E-35 3.7E-40 325.8 22.7 204 590-808 5-243 (255)
209 PRK14260 phosphate ABC transpo 100.0 2.3E-35 5E-40 325.5 23.6 202 590-808 7-243 (259)
210 PRK11614 livF leucine/isoleuci 100.0 1.5E-35 3.3E-40 322.7 21.4 203 590-808 5-226 (237)
211 TIGR01277 thiQ thiamine ABC tr 100.0 2.1E-35 4.5E-40 316.4 22.0 188 592-802 2-212 (213)
212 PRK09984 phosphonate/organopho 100.0 1.8E-35 3.9E-40 326.9 22.2 196 590-806 4-240 (262)
213 TIGR03873 F420-0_ABC_ATP propo 100.0 2.2E-35 4.9E-40 325.1 22.5 197 591-808 2-226 (256)
214 PRK11144 modC molybdate transp 100.0 1.9E-35 4.2E-40 339.2 22.8 195 591-809 2-219 (352)
215 TIGR01978 sufC FeS assembly AT 100.0 2.5E-35 5.4E-40 322.1 22.6 197 591-807 1-233 (243)
216 PRK10908 cell division protein 100.0 2.1E-35 4.6E-40 318.4 21.6 189 591-799 2-217 (222)
217 cd03262 ABC_HisP_GlnQ_permease 100.0 1.6E-35 3.5E-40 317.1 20.6 186 591-797 1-213 (213)
218 PRK14255 phosphate ABC transpo 100.0 2.9E-35 6.3E-40 323.5 23.0 202 590-808 5-236 (252)
219 cd03246 ABCC_Protease_Secretio 100.0 1.2E-35 2.6E-40 307.9 18.7 158 591-797 1-173 (173)
220 PRK10895 lipopolysaccharide AB 100.0 1.9E-35 4.2E-40 322.7 21.3 198 590-808 3-226 (241)
221 cd03299 ABC_ModC_like Archeal 100.0 2.7E-35 5.8E-40 320.3 22.3 196 591-808 1-219 (235)
222 PRK11701 phnK phosphonate C-P 100.0 3.9E-35 8.4E-40 323.6 23.1 206 590-808 6-241 (258)
223 TIGR00955 3a01204 The Eye Pigm 100.0 2.3E-34 4.9E-39 353.6 32.3 194 610-808 37-256 (617)
224 PRK14265 phosphate ABC transpo 100.0 6.6E-35 1.4E-39 324.2 24.2 204 588-808 18-258 (274)
225 PRK10418 nikD nickel transport 100.0 7.1E-35 1.5E-39 320.7 24.3 200 590-808 4-230 (254)
226 TIGR03740 galliderm_ABC gallid 100.0 4.8E-35 1E-39 315.8 22.3 194 591-805 1-210 (223)
227 TIGR03522 GldA_ABC_ATP gliding 100.0 3.7E-35 7.9E-40 330.5 22.3 197 591-808 3-221 (301)
228 PRK13536 nodulation factor exp 100.0 3.7E-35 8.1E-40 334.3 22.5 199 589-808 40-261 (340)
229 PRK14246 phosphate ABC transpo 100.0 4.3E-35 9.4E-40 322.7 22.2 204 588-808 8-241 (257)
230 PRK14241 phosphate transporter 100.0 4E-35 8.7E-40 323.4 21.9 202 590-808 4-242 (258)
231 PRK11248 tauB taurine transpor 100.0 3.5E-35 7.6E-40 323.0 21.2 192 591-803 2-215 (255)
232 PRK11308 dppF dipeptide transp 100.0 1.3E-34 2.7E-39 328.8 25.0 215 590-816 5-252 (327)
233 PRK11022 dppD dipeptide transp 100.0 9.5E-35 2.1E-39 329.8 24.0 213 590-816 3-251 (326)
234 PRK15112 antimicrobial peptide 100.0 1E-34 2.2E-39 321.7 23.6 207 590-808 4-239 (267)
235 PRK09544 znuC high-affinity zi 100.0 1.1E-34 2.4E-39 318.1 23.3 205 590-818 4-217 (251)
236 PRK10419 nikE nickel transport 100.0 1E-34 2.3E-39 321.7 22.8 214 590-816 3-248 (268)
237 TIGR01188 drrA daunorubicin re 100.0 6E-35 1.3E-39 329.1 20.5 185 611-808 6-213 (302)
238 PRK15093 antimicrobial peptide 100.0 1.4E-34 3.1E-39 329.4 23.7 213 590-816 3-256 (330)
239 PRK14258 phosphate ABC transpo 100.0 1.7E-34 3.6E-39 319.0 23.6 203 589-808 6-245 (261)
240 PRK09473 oppD oligopeptide tra 100.0 1.3E-34 2.8E-39 329.0 23.3 214 589-816 11-259 (330)
241 cd03234 ABCG_White The White s 100.0 8.1E-35 1.8E-39 314.7 20.6 202 591-801 4-226 (226)
242 TIGR02982 heterocyst_DevA ABC 100.0 7.7E-35 1.7E-39 313.6 20.0 190 591-797 2-219 (220)
243 PRK13547 hmuV hemin importer A 100.0 1.1E-34 2.4E-39 321.5 21.8 197 591-808 2-244 (272)
244 PRK15056 manganese/iron transp 100.0 1.3E-34 2.8E-39 321.7 22.1 198 590-808 6-230 (272)
245 PRK13546 teichoic acids export 100.0 2.9E-34 6.3E-39 316.7 24.3 216 589-818 3-241 (264)
246 TIGR02142 modC_ABC molybdenum 100.0 1.3E-34 2.8E-39 332.8 21.9 192 595-809 4-222 (354)
247 COG2884 FtsE Predicted ATPase 100.0 8.6E-35 1.9E-39 290.8 17.6 192 591-802 2-220 (223)
248 cd03213 ABCG_EPDR ABCG transpo 100.0 2.2E-34 4.7E-39 304.0 20.6 175 590-801 3-194 (194)
249 cd03230 ABC_DR_subfamily_A Thi 100.0 1.8E-34 3.9E-39 299.1 19.6 157 591-797 1-173 (173)
250 TIGR02770 nickel_nikD nickel i 100.0 2.2E-34 4.7E-39 312.2 20.5 185 614-808 2-215 (230)
251 cd03297 ABC_ModC_molybdenum_tr 100.0 3.2E-34 7E-39 307.4 21.3 183 595-801 5-214 (214)
252 TIGR02323 CP_lyasePhnK phospho 100.0 8.1E-34 1.8E-38 312.2 24.1 202 590-808 3-238 (253)
253 cd03232 ABC_PDR_domain2 The pl 100.0 3.3E-34 7.1E-39 302.1 19.8 173 590-801 3-192 (192)
254 cd03228 ABCC_MRP_Like The MRP 100.0 3.3E-34 7.1E-39 296.6 19.0 157 591-796 1-171 (171)
255 cd03233 ABC_PDR_domain1 The pl 100.0 4.4E-34 9.5E-39 303.6 20.4 179 590-801 3-202 (202)
256 COG1131 CcmA ABC-type multidru 100.0 7.3E-34 1.6E-38 317.5 22.8 199 590-808 4-226 (293)
257 KOG0060 Long-chain acyl-CoA tr 100.0 3.2E-31 7E-36 302.0 44.2 447 333-794 137-641 (659)
258 CHL00131 ycf16 sulfate ABC tra 100.0 2E-33 4.3E-38 308.9 23.6 197 590-806 7-239 (252)
259 cd03229 ABC_Class3 This class 100.0 7.5E-34 1.6E-38 295.8 18.6 158 591-796 1-178 (178)
260 TIGR01184 ntrCD nitrate transp 100.0 7.8E-34 1.7E-38 307.8 18.9 180 614-806 1-202 (230)
261 PRK13545 tagH teichoic acids e 100.0 3E-33 6.5E-38 326.2 24.7 208 590-816 21-239 (549)
262 COG0410 LivF ABC-type branched 100.0 1.6E-33 3.5E-38 292.1 19.9 204 590-808 3-226 (237)
263 TIGR03608 L_ocin_972_ABC putat 100.0 9.3E-34 2E-38 301.9 18.6 179 593-792 1-206 (206)
264 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-33 3.7E-38 339.4 22.7 198 590-808 11-229 (510)
265 cd03215 ABC_Carb_Monos_II This 100.0 1.2E-33 2.5E-38 295.5 18.4 158 590-797 4-182 (182)
266 COG4175 ProV ABC-type proline/ 100.0 9.7E-34 2.1E-38 302.4 17.3 190 614-816 44-262 (386)
267 PRK09580 sufC cysteine desulfu 100.0 4.2E-33 9.1E-38 305.5 22.2 198 591-807 2-234 (248)
268 PRK10261 glutathione transport 100.0 4.3E-33 9.2E-38 342.7 23.7 218 589-819 312-565 (623)
269 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.7E-33 1E-37 295.2 20.8 171 591-807 1-192 (200)
270 TIGR03771 anch_rpt_ABC anchore 100.0 3.3E-33 7.3E-38 301.4 19.6 177 618-808 1-201 (223)
271 PRK13549 xylose transporter AT 100.0 3E-33 6.6E-38 337.2 21.0 198 590-808 5-232 (506)
272 PRK10261 glutathione transport 100.0 3.1E-33 6.8E-38 343.9 21.5 206 589-808 11-258 (623)
273 PRK09700 D-allose transporter 100.0 3E-33 6.4E-38 337.7 20.4 198 590-808 5-234 (510)
274 cd03237 ABC_RNaseL_inhibitor_d 100.0 7.1E-33 1.5E-37 302.7 20.5 184 612-808 8-207 (246)
275 cd03267 ABC_NatA_like Similar 100.0 3.6E-33 7.8E-38 303.8 18.1 178 611-801 34-236 (236)
276 PRK10762 D-ribose transporter 100.0 4.5E-33 9.8E-38 335.3 20.6 198 590-808 4-230 (501)
277 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.3E-33 1.6E-37 336.9 22.2 205 590-808 4-248 (552)
278 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.1E-33 1.1E-37 300.2 18.3 190 591-801 23-224 (224)
279 PLN03211 ABC transporter G-25; 100.0 1.3E-32 2.8E-37 338.2 23.6 189 611-808 81-296 (659)
280 PRK13540 cytochrome c biogenes 100.0 9.8E-33 2.1E-37 292.8 19.5 180 591-791 2-198 (200)
281 PRK13543 cytochrome c biogenes 100.0 1.6E-32 3.4E-37 294.4 21.2 185 589-794 10-212 (214)
282 PRK03695 vitamin B12-transport 100.0 2E-32 4.3E-37 300.2 22.1 182 613-808 11-222 (248)
283 cd03231 ABC_CcmA_heme_exporter 100.0 1.9E-32 4E-37 290.9 21.0 181 591-792 1-198 (201)
284 TIGR03269 met_CoM_red_A2 methy 100.0 1.1E-32 2.4E-37 333.5 21.6 197 591-808 1-258 (520)
285 cd03214 ABC_Iron-Siderophores_ 100.0 6.3E-33 1.4E-37 289.4 16.7 176 592-801 1-180 (180)
286 PRK11288 araG L-arabinose tran 100.0 9.6E-33 2.1E-37 332.5 20.6 192 590-802 4-223 (501)
287 COG4619 ABC-type uncharacteriz 100.0 2.2E-33 4.7E-38 274.6 12.1 178 610-799 15-214 (223)
288 COG4525 TauB ABC-type taurine 100.0 5.1E-33 1.1E-37 278.2 15.0 193 591-802 4-218 (259)
289 PRK10982 galactose/methyl gala 100.0 1.2E-32 2.6E-37 330.9 20.7 194 593-807 1-222 (491)
290 PRK10938 putative molybdenum t 100.0 1.7E-32 3.7E-37 329.7 22.0 197 590-808 3-224 (490)
291 PRK13538 cytochrome c biogenes 100.0 2.6E-32 5.7E-37 290.5 20.9 181 591-792 2-202 (204)
292 PRK11819 putative ABC transpor 100.0 2.4E-32 5.2E-37 332.5 23.5 206 589-808 5-250 (556)
293 TIGR02633 xylG D-xylose ABC tr 100.0 1.4E-32 3E-37 331.2 21.0 197 591-807 2-229 (500)
294 PRK13541 cytochrome c biogenes 100.0 1.8E-32 3.8E-37 289.7 19.2 178 591-790 2-193 (195)
295 PRK13539 cytochrome c biogenes 100.0 2.5E-32 5.4E-37 291.3 20.4 182 591-794 3-200 (207)
296 cd03216 ABC_Carb_Monos_I This 100.0 2E-32 4.4E-37 280.9 18.9 159 591-799 1-162 (163)
297 PRK15064 ABC transporter ATP-b 100.0 4.4E-32 9.4E-37 328.9 25.0 204 591-808 2-242 (530)
298 PRK15134 microcin C ABC transp 100.0 2.8E-32 6.1E-37 330.6 22.9 205 590-808 5-246 (529)
299 COG1123 ATPase components of v 100.0 3.9E-32 8.5E-37 315.7 22.7 219 588-818 278-529 (539)
300 PRK15134 microcin C ABC transp 100.0 2.8E-32 6E-37 330.6 22.5 206 590-808 275-515 (529)
301 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-32 5.2E-37 330.6 21.7 209 589-808 278-517 (520)
302 PRK15177 Vi polysaccharide exp 100.0 2.1E-32 4.5E-37 293.1 18.3 184 613-808 2-192 (213)
303 TIGR02324 CP_lyasePhnL phospho 100.0 4E-32 8.6E-37 293.3 20.1 189 591-792 2-222 (224)
304 PRK13549 xylose transporter AT 100.0 2.1E-32 4.4E-37 330.0 18.9 201 590-807 259-493 (506)
305 TIGR01187 potA spermidine/putr 100.0 2.7E-32 5.9E-37 310.1 18.8 169 628-809 1-191 (325)
306 PRK15064 ABC transporter ATP-b 100.0 1.1E-31 2.3E-36 325.5 23.8 198 589-808 318-525 (530)
307 TIGR01189 ccmA heme ABC export 100.0 9.3E-32 2E-36 284.9 19.4 178 591-790 1-196 (198)
308 COG1123 ATPase components of v 100.0 1.7E-31 3.6E-36 310.4 21.4 213 590-817 5-253 (539)
309 TIGR01166 cbiO cobalt transpor 100.0 7.3E-32 1.6E-36 283.8 16.9 159 611-782 5-189 (190)
310 COG4555 NatA ABC-type Na+ tran 100.0 8.1E-32 1.8E-36 271.5 15.8 198 591-808 2-222 (245)
311 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.8E-31 3.9E-36 268.1 17.4 140 591-796 1-144 (144)
312 COG0444 DppD ABC-type dipeptid 100.0 1.8E-31 3.9E-36 290.5 18.7 213 591-820 2-256 (316)
313 COG1137 YhbG ABC-type (unclass 100.0 3.8E-32 8.2E-37 273.6 11.3 204 590-808 4-228 (243)
314 COG4559 ABC-type hemin transpo 100.0 3.2E-31 7E-36 269.2 18.1 201 591-808 2-230 (259)
315 COG4181 Predicted ABC-type tra 100.0 1.5E-31 3.3E-36 262.4 15.1 194 590-799 6-226 (228)
316 COG4148 ModC ABC-type molybdat 100.0 9.8E-32 2.1E-36 282.5 14.6 179 617-808 18-218 (352)
317 TIGR01257 rim_protein retinal- 100.0 4.5E-31 9.7E-36 347.0 23.9 201 589-808 927-1149(2272)
318 PRK10535 macrolide transporter 100.0 4.9E-31 1.1E-35 325.6 22.8 201 590-807 4-231 (648)
319 PRK09700 D-allose transporter 100.0 2.1E-31 4.6E-36 321.6 18.9 192 590-803 265-493 (510)
320 TIGR00956 3a01205 Pleiotropic 100.0 5.9E-31 1.3E-35 346.4 22.8 203 590-805 759-990 (1394)
321 TIGR02633 xylG D-xylose ABC tr 100.0 2.8E-31 6.1E-36 319.9 18.2 199 590-805 257-489 (500)
322 PRK11288 araG L-arabinose tran 100.0 4.9E-31 1.1E-35 317.7 19.0 195 590-808 257-485 (501)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-30 4.8E-35 315.3 24.1 198 589-808 321-531 (552)
324 TIGR01257 rim_protein retinal- 100.0 1.5E-30 3.3E-35 342.1 24.0 202 588-808 1935-2159(2272)
325 PRK11819 putative ABC transpor 100.0 2.7E-30 5.7E-35 314.6 24.0 198 589-808 323-533 (556)
326 COG4598 HisP ABC-type histidin 100.0 5.5E-31 1.2E-35 260.0 13.9 199 589-808 5-241 (256)
327 PRK10636 putative ABC transpor 100.0 3.5E-30 7.7E-35 317.2 24.1 199 588-808 310-517 (638)
328 cd03222 ABC_RNaseL_inhibitor T 100.0 1.7E-30 3.6E-35 268.9 17.8 145 594-799 4-152 (177)
329 PLN03073 ABC transporter F fam 100.0 3.5E-30 7.5E-35 318.3 23.9 198 589-808 507-714 (718)
330 PRK10762 D-ribose transporter 100.0 8.4E-31 1.8E-35 315.6 17.7 193 590-807 257-483 (501)
331 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.6E-30 3.4E-35 285.4 17.1 186 594-801 4-220 (255)
332 COG4608 AppF ABC-type oligopep 100.0 2.4E-30 5.3E-35 276.3 17.9 197 590-817 4-208 (268)
333 COG4161 ArtP ABC-type arginine 100.0 2.1E-30 4.5E-35 251.6 14.6 198 590-808 2-230 (242)
334 PRK11147 ABC transporter ATPas 100.0 1.1E-29 2.4E-34 313.4 24.5 199 588-808 317-528 (635)
335 PRK13409 putative ATPase RIL; 100.0 4.4E-30 9.5E-35 312.1 20.6 192 589-803 339-537 (590)
336 PRK10938 putative molybdenum t 100.0 3.3E-30 7.1E-35 309.9 18.3 192 589-800 259-484 (490)
337 COG4172 ABC-type uncharacteriz 100.0 1.9E-29 4E-34 276.4 21.7 215 588-816 274-524 (534)
338 cd03238 ABC_UvrA The excision 100.0 8.3E-30 1.8E-34 263.5 17.8 147 610-796 7-165 (176)
339 COG0411 LivG ABC-type branched 100.0 4.2E-30 9.1E-35 268.7 15.5 197 591-808 5-239 (250)
340 PRK15439 autoinducer 2 ABC tra 100.0 3.8E-30 8.2E-35 310.3 17.5 194 590-808 268-492 (510)
341 PRK10636 putative ABC transpor 100.0 1.9E-29 4.1E-34 310.7 23.9 204 591-808 2-236 (638)
342 COG1129 MglA ABC-type sugar tr 100.0 2.3E-29 5E-34 290.9 22.1 194 589-803 7-229 (500)
343 COG4604 CeuD ABC-type enteroch 100.0 3.3E-30 7.2E-35 258.7 10.5 197 591-808 2-225 (252)
344 PRK11147 ABC transporter ATPas 100.0 5.9E-29 1.3E-33 306.9 22.9 203 590-808 3-243 (635)
345 PRK10982 galactose/methyl gala 100.0 2E-29 4.3E-34 303.1 18.1 200 589-806 249-478 (491)
346 PLN03140 ABC transporter G fam 100.0 7.6E-29 1.7E-33 325.3 23.4 207 590-805 867-1107(1470)
347 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.5E-28 5.4E-33 249.0 17.3 140 593-796 2-157 (157)
348 COG3845 ABC-type uncharacteriz 100.0 4E-28 8.6E-33 274.7 18.2 191 589-800 3-221 (501)
349 COG1101 PhnK ABC-type uncharac 100.0 2E-28 4.4E-33 249.3 14.2 190 610-800 18-230 (263)
350 COG0488 Uup ATPase components 100.0 1.2E-27 2.5E-32 283.9 22.8 204 590-808 3-240 (530)
351 TIGR00956 3a01205 Pleiotropic 100.0 3.4E-28 7.3E-33 320.4 19.7 189 611-808 74-300 (1394)
352 PRK13409 putative ATPase RIL; 100.0 3.4E-28 7.4E-33 295.7 16.7 178 595-795 78-287 (590)
353 PLN03140 ABC transporter G fam 100.0 3.9E-28 8.5E-33 318.6 17.8 196 611-808 178-427 (1470)
354 COG1119 ModF ABC-type molybden 100.0 8.6E-28 1.9E-32 251.3 15.1 195 587-802 28-256 (257)
355 COG1134 TagH ABC-type polysacc 99.9 1.1E-26 2.4E-31 243.4 20.1 185 611-808 40-236 (249)
356 PLN03073 ABC transporter F fam 99.9 1.6E-26 3.4E-31 285.9 24.1 203 589-808 176-431 (718)
357 COG4136 ABC-type uncharacteriz 99.9 6.4E-27 1.4E-31 225.1 13.2 182 591-792 3-207 (213)
358 COG4167 SapF ABC-type antimicr 99.9 1.8E-26 4E-31 228.6 16.2 195 617-822 33-254 (267)
359 KOG0061 Transporter, ABC super 99.9 1.6E-26 3.4E-31 281.6 18.7 208 589-808 24-260 (613)
360 cd03270 ABC_UvrA_I The excisio 99.9 3.4E-26 7.4E-31 247.2 18.7 177 611-801 8-226 (226)
361 COG4172 ABC-type uncharacteriz 99.9 1.1E-25 2.3E-30 247.1 21.3 213 589-818 5-257 (534)
362 PF00005 ABC_tran: ABC transpo 99.9 9.6E-27 2.1E-31 231.4 10.7 122 614-749 1-137 (137)
363 cd03271 ABC_UvrA_II The excisi 99.9 5.2E-26 1.1E-30 248.8 16.8 180 612-803 9-261 (261)
364 COG0488 Uup ATPase components 99.9 5.6E-25 1.2E-29 261.1 25.4 200 587-808 318-525 (530)
365 COG4152 ABC-type uncharacteriz 99.9 4.2E-26 9.1E-31 236.4 13.4 202 590-808 2-219 (300)
366 KOG0064 Peroxisomal long-chain 99.9 4.9E-22 1.1E-26 223.9 43.3 448 331-792 170-681 (728)
367 COG4674 Uncharacterized ABC-ty 99.9 4.8E-25 1E-29 221.4 13.4 197 590-808 5-235 (249)
368 cd03278 ABC_SMC_barmotin Barmo 99.9 2E-24 4.3E-29 228.3 14.3 150 617-793 17-189 (197)
369 COG4107 PhnK ABC-type phosphon 99.9 2.7E-24 5.8E-29 211.7 13.4 214 590-818 6-251 (258)
370 COG0396 sufC Cysteine desulfur 99.9 1E-22 2.2E-27 210.8 20.9 199 591-808 4-233 (251)
371 COG4133 CcmA ABC-type transpor 99.9 8E-24 1.7E-28 212.5 11.8 163 611-786 15-196 (209)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.3E-23 5.1E-28 227.7 13.4 169 623-793 23-234 (243)
373 cd03240 ABC_Rad50 The catalyti 99.9 6.3E-23 1.4E-27 218.2 13.4 153 617-795 17-199 (204)
374 COG4586 ABC-type uncharacteriz 99.9 2.5E-23 5.4E-28 219.2 10.0 186 612-808 38-246 (325)
375 cd03279 ABC_sbcCD SbcCD and ot 99.9 9.9E-23 2.1E-27 218.4 12.6 159 622-797 27-211 (213)
376 cd03275 ABC_SMC1_euk Eukaryoti 99.9 8.2E-23 1.8E-27 224.0 10.8 169 625-795 24-235 (247)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.3E-22 5E-27 221.0 14.2 171 623-796 25-247 (251)
378 PRK00349 uvrA excinuclease ABC 99.9 5.9E-22 1.3E-26 248.7 18.5 94 714-808 824-927 (943)
379 KOG0927 Predicted transporter 99.9 2.5E-22 5.4E-27 228.3 10.8 200 588-807 387-595 (614)
380 PRK00635 excinuclease ABC subu 99.9 8.4E-21 1.8E-25 247.1 19.9 99 709-808 797-906 (1809)
381 COG4778 PhnL ABC-type phosphon 99.8 1.8E-21 3.8E-26 191.5 9.7 190 591-793 5-226 (235)
382 KOG0059 Lipid exporter ABCA1 a 99.8 3.7E-21 8.1E-26 244.4 14.6 200 589-808 563-787 (885)
383 PF00664 ABC_membrane: ABC tra 99.8 1E-17 2.2E-22 182.6 38.9 267 278-546 2-275 (275)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.8 7.5E-22 1.6E-26 211.0 4.5 163 624-793 26-203 (212)
385 TIGR00630 uvra excinuclease AB 99.8 3.5E-20 7.7E-25 232.4 18.5 92 714-806 822-923 (924)
386 cd03239 ABC_SMC_head The struc 99.8 1.4E-20 3.1E-25 195.7 11.2 143 624-794 23-172 (178)
387 KOG0927 Predicted transporter 99.8 1E-19 2.2E-24 207.2 16.7 204 589-808 74-309 (614)
388 KOG0065 Pleiotropic drug resis 99.8 3E-20 6.4E-25 230.5 10.1 186 611-805 804-1018(1391)
389 COG1129 MglA ABC-type sugar tr 99.8 4E-19 8.7E-24 206.2 17.0 186 614-805 275-487 (500)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.8 3.8E-19 8.3E-24 188.3 14.9 155 617-796 16-192 (198)
391 COG4138 BtuD ABC-type cobalami 99.8 7E-20 1.5E-24 181.0 4.4 177 617-808 19-221 (248)
392 COG1245 Predicted ATPase, RNas 99.8 3E-18 6.6E-23 191.3 16.0 163 617-793 361-530 (591)
393 KOG0062 ATPase component of AB 99.8 5E-19 1.1E-23 200.7 9.2 195 589-808 79-285 (582)
394 KOG0066 eIF2-interacting prote 99.8 2.8E-18 6E-23 189.2 14.5 195 589-806 585-789 (807)
395 KOG0062 ATPase component of AB 99.7 5.4E-18 1.2E-22 192.4 13.0 190 588-799 360-559 (582)
396 cd03280 ABC_MutS2 MutS2 homolo 99.7 5E-18 1.1E-22 180.3 9.9 141 617-800 21-171 (200)
397 cd01128 rho_factor Transcripti 99.7 8.6E-18 1.9E-22 183.0 10.5 187 618-818 11-226 (249)
398 COG3845 ABC-type uncharacteriz 99.7 7.6E-17 1.7E-21 183.6 18.4 207 587-805 254-489 (501)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.7 6.3E-17 1.4E-21 173.2 14.6 164 625-796 25-211 (213)
400 COG0178 UvrA Excinuclease ATPa 99.7 4.9E-16 1.1E-20 184.5 20.4 94 714-808 816-919 (935)
401 cd03227 ABC_Class2 ABC-type Cl 99.7 8.1E-17 1.8E-21 165.2 11.2 133 617-794 15-155 (162)
402 KOG2355 Predicted ABC-type tra 99.7 3E-16 6.4E-21 159.2 14.5 200 587-808 10-237 (291)
403 COG1245 Predicted ATPase, RNas 99.7 1.1E-16 2.4E-21 178.9 11.0 160 620-793 97-287 (591)
404 cd03241 ABC_RecN RecN ATPase i 99.7 2.8E-16 6E-21 175.2 14.2 76 720-796 170-249 (276)
405 PRK00635 excinuclease ABC subu 99.7 5.6E-16 1.2E-20 202.6 18.3 99 708-808 1688-1796(1809)
406 KOG0065 Pleiotropic drug resis 99.6 6E-16 1.3E-20 192.7 12.8 196 611-808 128-351 (1391)
407 COG2401 ABC-type ATPase fused 99.6 6.8E-15 1.5E-19 162.8 12.1 176 611-798 396-588 (593)
408 cd03243 ABC_MutS_homologs The 99.6 1.1E-15 2.5E-20 162.5 5.8 153 614-805 20-176 (202)
409 cd03242 ABC_RecF RecF is a rec 99.6 1.6E-14 3.4E-19 160.6 14.7 88 706-797 165-269 (270)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.7E-15 3.6E-20 163.3 4.6 151 611-801 17-174 (222)
411 PRK00349 uvrA excinuclease ABC 99.6 1.5E-14 3.3E-19 182.4 13.1 137 669-808 433-585 (943)
412 TIGR00630 uvra excinuclease AB 99.6 1.8E-14 4E-19 181.3 13.8 94 714-808 481-583 (924)
413 cd03283 ABC_MutS-like MutS-lik 99.5 1.7E-14 3.7E-19 152.8 8.3 133 617-786 19-154 (199)
414 COG4170 SapD ABC-type antimicr 99.5 2.4E-13 5.2E-18 138.4 10.2 188 617-816 27-256 (330)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.4 7.7E-13 1.7E-17 140.6 11.3 139 611-786 16-157 (204)
416 TIGR00606 rad50 rad50. This fa 99.4 5.6E-13 1.2E-17 177.2 12.3 113 667-785 1148-1275(1311)
417 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.1E-12 2.5E-17 141.3 12.1 72 720-792 136-211 (220)
418 KOG0066 eIF2-interacting prote 99.4 7.7E-13 1.7E-17 146.7 9.6 199 590-806 264-497 (807)
419 cd03284 ABC_MutS1 MutS1 homolo 99.3 2.9E-12 6.3E-17 137.6 9.4 151 612-806 19-179 (216)
420 TIGR02858 spore_III_AA stage I 99.3 7E-12 1.5E-16 138.3 8.5 140 624-807 112-268 (270)
421 PHA02562 46 endonuclease subun 99.3 5.8E-12 1.2E-16 154.7 8.2 92 705-798 447-556 (562)
422 KOG0063 RNAse L inhibitor, ABC 99.3 2.4E-11 5.3E-16 135.4 11.8 185 611-808 349-548 (592)
423 smart00534 MUTSac ATPase domai 99.2 1E-11 2.2E-16 130.3 6.8 123 626-788 2-130 (185)
424 KOG0058 Peptide exporter, ABC 99.2 2.3E-10 4.9E-15 136.6 18.7 134 928-1061 189-326 (716)
425 cd03281 ABC_MSH5_euk MutS5 hom 99.2 9.7E-11 2.1E-15 125.6 13.4 128 617-786 21-160 (213)
426 cd00820 PEPCK_HprK Phosphoenol 99.2 1.8E-11 3.9E-16 115.4 5.6 62 612-682 3-78 (107)
427 TIGR01069 mutS2 MutS2 family p 99.2 1.2E-10 2.7E-15 145.6 12.1 131 616-782 314-447 (771)
428 TIGR00634 recN DNA repair prot 99.1 1.4E-10 3.1E-15 141.8 8.9 77 719-796 439-519 (563)
429 PRK13695 putative NTPase; Prov 99.1 1.1E-10 2.3E-15 121.4 6.7 153 625-800 2-156 (174)
430 PRK10869 recombination and rep 99.1 3.4E-10 7.5E-15 137.4 9.7 76 720-796 430-509 (553)
431 KOG0063 RNAse L inhibitor, ABC 99.0 3E-10 6.5E-15 126.9 6.3 158 621-793 98-287 (592)
432 PRK00409 recombination and DNA 99.0 3.2E-09 6.9E-14 133.5 15.7 134 617-786 320-456 (782)
433 cd03287 ABC_MSH3_euk MutS3 hom 99.0 9.1E-10 2E-14 118.5 8.6 137 611-786 18-160 (222)
434 PTZ00132 GTP-binding nuclear p 98.9 1.3E-09 2.9E-14 117.0 6.5 41 725-766 157-202 (215)
435 PF00664 ABC_membrane: ABC tra 98.9 4E-08 8.6E-13 106.9 18.0 108 947-1054 61-168 (275)
436 PRK01156 chromosome segregatio 98.8 5.1E-09 1.1E-13 135.6 9.6 76 717-793 798-883 (895)
437 TIGR00958 3a01208 Conjugate Tr 98.8 1.2E-07 2.5E-12 119.8 20.6 128 929-1056 203-334 (711)
438 cd01124 KaiC KaiC is a circadi 98.8 3.2E-08 6.9E-13 103.5 12.8 141 626-793 2-163 (187)
439 COG0178 UvrA Excinuclease ATPa 98.8 2.4E-08 5.2E-13 120.1 12.6 137 671-809 427-578 (935)
440 PRK08533 flagellar accessory p 98.8 4E-08 8.6E-13 106.8 12.6 145 619-793 20-184 (230)
441 PRK07721 fliI flagellum-specif 98.8 9.2E-08 2E-12 112.5 16.3 170 617-805 152-340 (438)
442 PRK03918 chromosome segregatio 98.8 1.4E-08 3E-13 131.5 10.0 74 719-793 787-867 (880)
443 cd01131 PilT Pilus retraction 98.7 2.6E-08 5.7E-13 105.7 7.4 119 625-793 3-122 (198)
444 TIGR00618 sbcc exonuclease Sbc 98.7 3.9E-08 8.4E-13 128.9 10.3 77 718-795 948-1036(1042)
445 TIGR02168 SMC_prok_B chromosom 98.7 2E-08 4.3E-13 133.9 7.5 75 717-792 1086-1164(1179)
446 PRK00064 recF recombination pr 98.7 3.8E-08 8.2E-13 114.0 8.8 76 719-797 272-359 (361)
447 TIGR02788 VirB11 P-type DNA tr 98.7 3.4E-08 7.4E-13 112.0 7.9 143 617-808 138-281 (308)
448 PRK13830 conjugal transfer pro 98.6 1.6E-07 3.6E-12 119.4 13.7 67 735-802 649-727 (818)
449 cd01120 RecA-like_NTPases RecA 98.6 3.4E-07 7.3E-12 92.7 12.4 129 625-783 1-140 (165)
450 smart00382 AAA ATPases associa 98.6 9.3E-07 2E-11 86.2 15.0 119 622-779 1-125 (148)
451 cd03286 ABC_MSH6_euk MutS6 hom 98.6 1.1E-07 2.3E-12 102.3 8.0 137 611-785 17-158 (218)
452 PF13304 AAA_21: AAA domain; P 98.6 1.4E-07 3E-12 102.0 8.6 63 720-783 236-302 (303)
453 TIGR02203 MsbA_lipidA lipid A 98.6 2.7E-06 6E-11 104.9 21.1 112 929-1040 56-167 (571)
454 PRK10790 putative multidrug tr 98.5 6E-06 1.3E-10 102.4 21.8 122 933-1054 71-196 (592)
455 TIGR02169 SMC_prok_A chromosom 98.5 1.6E-07 3.5E-12 125.3 8.3 75 718-793 1072-1150(1164)
456 TIGR01193 bacteriocin_ABC ABC- 98.5 5.1E-06 1.1E-10 105.2 21.3 177 877-1056 144-328 (708)
457 PRK06067 flagellar accessory p 98.5 1.4E-06 3E-11 95.1 13.6 148 619-793 21-186 (234)
458 PRK11174 cysteine/glutathione 98.5 6.4E-06 1.4E-10 102.1 21.2 104 929-1032 65-168 (588)
459 TIGR00101 ureG urease accessor 98.5 5.3E-08 1.2E-12 103.4 1.5 100 625-725 3-108 (199)
460 PRK06793 fliI flagellum-specif 98.4 8.1E-07 1.7E-11 103.8 11.3 153 613-803 146-306 (432)
461 TIGR02868 CydC thiol reductant 98.4 9.1E-06 2E-10 99.4 20.7 98 937-1034 63-160 (529)
462 PRK10522 multidrug transporter 98.4 8.2E-06 1.8E-10 100.2 20.0 101 933-1034 54-154 (547)
463 TIGR03796 NHPM_micro_ABC1 NHPM 98.4 1.1E-05 2.3E-10 102.4 21.4 125 929-1054 196-324 (710)
464 TIGR01194 cyc_pep_trnsptr cycl 98.4 1E-05 2.2E-10 99.5 20.4 102 932-1034 58-159 (555)
465 TIGR01846 type_I_sec_HlyB type 98.4 1.5E-05 3.3E-10 100.7 21.4 104 929-1033 181-284 (694)
466 PRK10246 exonuclease subunit S 98.4 6.1E-07 1.3E-11 117.3 8.8 75 718-793 947-1031(1047)
467 PRK02224 chromosome segregatio 98.4 5.6E-07 1.2E-11 116.7 8.4 75 719-794 780-868 (880)
468 TIGR01192 chvA glucan exporter 98.4 2.1E-05 4.6E-10 97.3 21.5 90 953-1042 82-171 (585)
469 TIGR02857 CydD thiol reductant 98.4 1.5E-05 3.3E-10 97.5 20.1 103 929-1031 46-148 (529)
470 TIGR02204 MsbA_rel ABC transpo 98.4 2.1E-05 4.6E-10 97.2 21.3 126 930-1055 61-190 (576)
471 TIGR01420 pilT_fam pilus retra 98.4 4.7E-07 1E-11 104.3 6.2 125 618-792 117-242 (343)
472 PRK13657 cyclic beta-1,2-gluca 98.3 2.6E-05 5.6E-10 96.7 21.9 159 896-1054 24-183 (588)
473 PRK11160 cysteine/glutathione 98.3 2.1E-05 4.6E-10 97.1 20.9 101 933-1033 66-166 (574)
474 PF09818 ABC_ATPase: Predicted 98.3 3E-06 6.5E-11 97.3 12.0 157 618-796 240-415 (448)
475 TIGR03797 NHPM_micro_ABC2 NHPM 98.3 2.3E-05 4.9E-10 99.0 20.8 126 929-1055 178-307 (686)
476 PRK12369 putative transporter; 98.3 0.0075 1.6E-07 68.9 38.5 223 338-572 83-321 (326)
477 TIGR00767 rho transcription te 98.3 1.9E-06 4.1E-11 99.0 8.9 100 554-668 98-209 (415)
478 TIGR03238 dnd_assoc_3 dnd syst 98.3 6.2E-07 1.4E-11 104.4 4.9 48 612-662 20-69 (504)
479 TIGR00611 recf recF protein. A 98.2 1.3E-06 2.9E-11 101.2 6.6 62 720-784 275-345 (365)
480 PRK11176 lipid transporter ATP 98.2 6.3E-05 1.4E-09 93.2 21.3 122 933-1054 71-196 (582)
481 PF13748 ABC_membrane_3: ABC t 98.2 0.0043 9.3E-08 66.4 30.9 179 266-457 1-180 (237)
482 TIGR03375 type_I_sec_LssB type 98.2 8.5E-05 1.8E-09 94.0 21.4 123 932-1056 192-318 (694)
483 COG1132 MdlB ABC-type multidru 98.2 6.2E-05 1.3E-09 92.9 19.5 106 928-1033 53-158 (567)
484 cd01125 repA Hexameric Replica 98.2 3.6E-06 7.7E-11 92.1 7.7 128 623-781 1-160 (239)
485 PRK11098 microcin B17 transpor 98.1 0.026 5.7E-07 66.0 38.8 223 339-573 159-396 (409)
486 PRK06995 flhF flagellar biosyn 98.1 3.6E-06 7.7E-11 99.8 6.6 123 619-752 252-380 (484)
487 PRK10789 putative multidrug tr 98.1 6.3E-05 1.4E-09 92.9 17.7 104 929-1032 38-142 (569)
488 PRK14079 recF recombination pr 98.1 5.1E-06 1.1E-10 96.0 7.5 76 720-801 263-347 (349)
489 PF06472 ABC_membrane_2: ABC t 98.1 0.012 2.6E-07 66.2 33.4 200 279-482 31-237 (281)
490 COG3910 Predicted ATPase [Gene 98.1 3.9E-05 8.3E-10 78.4 11.9 167 618-807 33-215 (233)
491 COG2274 SunT ABC-type bacterio 98.1 0.00018 3.8E-09 89.8 20.4 129 930-1059 197-329 (709)
492 PRK01889 GTPase RsgA; Reviewed 98.0 5.8E-06 1.3E-10 95.6 6.2 80 619-699 191-285 (356)
493 cd01130 VirB11-like_ATPase Typ 98.0 8.1E-06 1.8E-10 85.8 6.3 42 617-659 19-60 (186)
494 PRK10733 hflB ATP-dependent me 98.0 2.7E-06 5.8E-11 105.7 2.7 161 449-648 38-210 (644)
495 cd02023 UMPK Uridine monophosp 98.0 8.6E-06 1.9E-10 86.4 5.5 108 625-755 1-115 (198)
496 TIGR02655 circ_KaiC circadian 97.9 3.7E-06 8E-11 101.4 2.2 140 620-793 18-190 (484)
497 PRK13891 conjugal transfer pro 97.9 7.9E-05 1.7E-09 95.7 14.1 54 731-785 680-735 (852)
498 PRK00300 gmk guanylate kinase; 97.8 1.8E-05 3.9E-10 84.3 5.5 28 621-648 3-30 (205)
499 PLN03210 Resistant to P. syrin 97.8 5.9E-05 1.3E-09 100.4 10.8 142 617-793 201-349 (1153)
500 COG3044 Predicted ATPase of th 97.8 5.7E-05 1.2E-09 85.0 8.5 156 618-798 238-412 (554)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.7e-182 Score=1693.09 Aligned_cols=852 Identities=37% Similarity=0.634 Sum_probs=771.9
Q ss_pred CCccccCCH--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcc---CCCChHHHHHHHHHH
Q 001505 201 ISTFASAGV--LSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT---DATSLPQVIIHAVWK 275 (1065)
Q Consensus 201 ~~p~~~a~~--~s~~~F~Wl~pll~~G~~~~L~~~Dl~~l~~~~~s~~~~~~f~~~w~~~~~---~~~~l~~~l~~~~~~ 275 (1065)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.+ ++|+++++++++||+
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 344555555 999999999999999999999999999999999999999999999999854 358899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTV 355 (1065)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~ 355 (1065)
.+++.++++.+...+.+++|.+++.+++|+++++. +.+. ||+++++++++.++++++.++|+|..+++|+|+|+++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~-~~~~-g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL-PLNN-GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc-ccch-hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999998743 2455 999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001505 356 LIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSN 432 (1065)
Q Consensus 356 ~iy~K~L~ls~~~~---~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~~ 432 (1065)
+||+|+|+++..++ +.|+|+|+|++|++|+.++..++|.+|.+|+|+++++++||..+| +++++|++++++++|+|
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG-~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG-PSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 99999999998775 899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 433 TPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLV 512 (1065)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v 512 (1065)
.+++++++++|++.|+.+|+|++.|+|+|+|||+||+|+||+.|.++|++.|++|+++++|..+..+++.+.++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCcc
Q 001505 513 SVITFGVCI-LLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVA 590 (1065)
Q Consensus 513 ~~~~f~~~~-~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~~~~~~~~~ 590 (1065)
++++|++|+ ..++.+|+.++|+++++|++|+.|+.++|..++.+.|++||++|+++||..+| +++...+.+.++.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 999999999 77889999999999999999999999999999999999999999999999998 5544433344455678
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCC
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pw 669 (1065)
|+++|++|+|+++ ++.++|+| |++||+|+++||||+|||||||||++|||||++.+|++ .++|++|||||+||
T Consensus 519 i~i~~~sfsW~~~-----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v-~v~gsiaYv~Q~pW 592 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSE-----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV-AVNGSVAYVPQQPW 592 (1381)
T ss_pred EEEeeeeEecCCC-----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE-EEcCeEEEeccccH
Confidence 9999999999985 45679999 99999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001505 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1065)
Q Consensus 670 if~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~S 749 (1065)
||||||||||+||+|||++||++|++||+|++|++.||+||+|+|||||+||||||||||+||||+|+|+||||||||+|
T Consensus 593 I~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHHHHHHHHhhhcccCCC
Q 001505 750 AVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN 829 (1065)
Q Consensus 750 ALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~ 829 (1065)
|||+||++|||++||++++++||||+|||++++|++||+|++|+||+|.++|+|+||++ .+..|.++..+...+.+..
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~~~~~~~~~~~- 750 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELAHEEESEQEEE- 750 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHhhccchhhccc-
Confidence 99999999999999999999999999999999999999999999999999999999998 8999998843322111110
Q ss_pred CCCccccc-c-cCcc--cccchhhhhc-cCCCCCCCCCCCCcchhhhcCcccHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 001505 830 PPQEDKCL-S-RVPC--QMSQITEERF-ARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQ 904 (1065)
Q Consensus 830 ~~~~~~~~-~-~~~~--~~~~~~~~~~-~~~~~~~~~~~l~~~E~r~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~ 904 (1065)
+....... . ..+. +......... +..+.+++..+++++|||++|+|+|++|+.|+++++|++.++++++++++.+
T Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 751 ASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred cccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 00000000 0 0000 0000000000 0011122245677889999999999999999999878887888888999999
Q ss_pred HHHhchhhhheeeccccC---C--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Q 001505 905 ALQMGSNYWIAWATDEKR---K--VSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFD 979 (1065)
Q Consensus 905 ~~~~~~~~Wl~~~~~~~~---~--~~~~~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD 979 (1065)
++++++||||++|+++.. . .+..+|+++|++++++++++.++|++.+..+|++||++||++|+++|+||||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999995321 1 35778999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh--c
Q 001505 980 STPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQARKLSISRIILF--H 1057 (1065)
Q Consensus 980 ~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~iq~~Yl~tsReL~~--~ 1057 (1065)
+||+||||||||||++.||..+|..+..+++++++++++++|+++++|+++++++|+.++|+++|+||++|||||+| .
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999954 4
Q ss_pred ccccCC
Q 001505 1058 VCHNTV 1063 (1065)
Q Consensus 1058 ~~~~~~ 1063 (1065)
..|+|+
T Consensus 991 itRSPi 996 (1381)
T KOG0054|consen 991 ITRSPI 996 (1381)
T ss_pred cccchH
Confidence 455553
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.3e-140 Score=1384.80 Aligned_cols=1025 Identities=25% Similarity=0.400 Sum_probs=815.5
Q ss_pred chhhchhhhhhHHHHHHHHHHHHHHHHHHhhccCCcchhh--hhhhhHHHHHHHHHHHHHHHHHHhHhhhhhhccc-ccc
Q 001505 7 LELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRI-VSF 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (1065)
+...-.|.++.++..++++++....+....+.....++.. ........+.++|+....+++...+.... ...+ .+
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 106 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVL-NLDGQTS- 106 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccc-
Confidence 3444467677777777776666655554422111111101 11134555666666666666644433321 1111 12
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhc-----cccccchhHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhH
Q 001505 84 KSVSLVVTWALATVVALCSRYYRTLG-----EHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKA 155 (1065)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1065)
+...+...+..+++..+++++.+.++ ++.++++.+++||++. +++.+ . ........... ....+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~~~~~ 180 (1622)
T PLN03130 107 LPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNL-V---LSVKEYYSSFV--LYLYISE 180 (1622)
T ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHH-H---HHHHHHHhccc--cceehhH
Confidence 23445554555676666622222222 3567899999999998 65444 2 12222222110 0112222
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCCCCCCC------ccccchhhccCCCccccCCHhHHHHHHhHHHHHHhhccCC
Q 001505 156 VDFVSLPLLVLLCFNATYACCCARDPSDLDIPLL------REEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQK 229 (1065)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~p~~~a~~~s~~~F~Wl~pll~~G~~~~ 229 (1065)
+.+.+.+.+..+. ++.|..+. ..+.|.. .+.++.+..++++||++||+|||++|||+||++++|||++
T Consensus 181 ~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~ 254 (1622)
T PLN03130 181 VAAQVLFGILLLV----YFPNLDPY--PGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRP 254 (1622)
T ss_pred HHHHHHHHHHHHH----HHhcCCCC--cccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 2222221111100 11122221 0111100 0011123346789999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001505 230 LELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGK 308 (1065)
Q Consensus 230 L~~~Dl~~l~~~~~s~~~~~~f~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~ 308 (1065)
|+.+|||+++++|+++.+.++|++.|+++.+ ++|+++++++++||+.++..+++.++..++.+++|++++.+++++.++
T Consensus 255 L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~ 334 (1622)
T PLN03130 255 LTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNG 334 (1622)
T ss_pred CChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998754 458999999999999999999999999999999999999999999754
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHhhHHHH
Q 001505 309 HDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERI 385 (1065)
Q Consensus 309 ~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~~iy~K~L~ls~~~~---~~G~ivnlms~D~~~i 385 (1065)
+. .+. ++.++++++++.++.+++.++|++...+++.++|+.++..+|+|.++++.... ++|+++|+|++|++++
T Consensus 335 ~~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i 411 (1622)
T PLN03130 335 EP--AWI-GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEAL 411 (1622)
T ss_pred Cc--chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHH
Confidence 32 334 67666666666666677778888888999999999999999999999986533 8899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001505 386 GDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMR 465 (1065)
Q Consensus 386 ~~~~~~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir 465 (1065)
.+++..+|.+|..|++++++++++|..+| +++++++++++++++++..+++++++.+++.++.+|+|.+.++|+++|||
T Consensus 412 ~~~~~~l~~l~~~pl~ii~~~~lL~~~lg-~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~ 490 (1622)
T PLN03130 412 QQICQQLHTLWSAPFRIIIAMVLLYQQLG-VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMD 490 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 88888888888999999999999999999999999999999999999999
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHH
Q 001505 466 VLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEP 545 (1065)
Q Consensus 466 ~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~p 545 (1065)
+||+|+||+.|.+++++.|++|++..++..+..+...++....|.++++++|++|.+.++++|++.+|+++++++.+..|
T Consensus 491 ~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~p 570 (1622)
T PLN03130 491 TVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFP 570 (1622)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888777777777788888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCc
Q 001505 546 IYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGS 624 (1065)
Q Consensus 546 l~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~ 624 (1065)
+..+|..+..+.++++|++||++|++.+|..+... .+.......|+++|++|+|+++ +++++|+| |++|++||
T Consensus 571 l~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~~~~~~~~~I~~~nvsf~y~~~-----~~~~vL~~inl~i~~Ge 644 (1622)
T PLN03130 571 LFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-PPLEPGLPAISIKNGYFSWDSK-----AERPTLSNINLDVPVGS 644 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-CcccCCCCceEEEeeEEEccCC-----CCCceeeceeEEecCCC
Confidence 99999999999999999999999998766221111 1111123469999999999864 34679999 99999999
Q ss_pred EEEEECCCCCChHHHHHHHhCcccCCC-CcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHH
Q 001505 625 KVAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703 (1065)
Q Consensus 625 ~vaIvG~~GSGKSTLl~~LlGe~~~~~-G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di 703 (1065)
+++||||||||||||+++|+||++|.+ |+| .++|+||||||+||||||||||||+||+|+|+++|++|+++|+|++|+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I-~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di 723 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASV-VIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDL 723 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceE-EEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHH
Confidence 999999999999999999999999999 899 999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchh
Q 001505 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1065)
Q Consensus 704 ~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l 783 (1065)
+.||+||+|+|||+|.||||||||||+||||+|+|||||||||||||||+||+++|+++|+++.+++||+|+||||++++
T Consensus 724 ~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l 803 (1622)
T PLN03130 724 DLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFL 803 (1622)
T ss_pred HhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hcCCEEEEEeCCEEEEecCHHHHHhhcchHHHHHHHHhhhcccCCCCCCccc-c-cccCcccc--cchhhhhcc-CCCCC
Q 001505 784 DAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDK-C-LSRVPCQM--SQITEERFA-RPISC 858 (1065)
Q Consensus 784 ~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~-~~~~~ 858 (1065)
+.||+|++|+||+|+++|+|+||++ .++.|.+++..+....+..+..++.. . ...++..+ .....++.. ...++
T Consensus 804 ~~aD~Ii~L~~G~i~e~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1622)
T PLN03130 804 SQVDRIILVHEGMIKEEGTYEELSN-NGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSK 882 (1622)
T ss_pred HhCCEEEEEeCCEEEEeCCHHHHHh-cchhHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999998 78889888865432111100000000 0 00000000 000000000 00001
Q ss_pred CCCCCCCcchhhhcCcccHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhchhhhheeeccccC--CCChhHHHHHHHHH
Q 001505 859 GEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFL 936 (1065)
Q Consensus 859 ~~~~~l~~~E~r~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~~~--~~~~~~~l~vY~~l 936 (1065)
.....+.++|++++|.|+|++|+.|+++.++++++.+++++.++.+++.+++++|+++|++... ......|+++|+++
T Consensus 883 ~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l 962 (1622)
T PLN03130 883 EGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALL 962 (1622)
T ss_pred ccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHH
Confidence 1123356778899999999999999999776666666667777888999999999999985321 22356789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHH
Q 001505 937 SGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016 (1065)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l 1016 (1065)
+++..++.+++.+++...+.++++++|++|+++++|+||+|||+||+|||+|||++|++.+|..+|..+..++..++.++
T Consensus 963 ~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i 1042 (1622)
T PLN03130 963 SFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLL 1042 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhc
Q 001505 1017 SIIILMSQAAWQVFPLFLVILGISIWYQARKLSISRIILFH 1057 (1065)
Q Consensus 1017 ~~i~vi~~~~~~~~~~~ipl~~~~~~iq~~Yl~tsReL~~~ 1057 (1065)
++++++++.+|..+++++|+.+++++++++|.+++||+++.
T Consensus 1043 ~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~ 1083 (1622)
T PLN03130 1043 STFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRL 1083 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888999888899999999999999664
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-138 Score=1370.31 Aligned_cols=1025 Identities=25% Similarity=0.404 Sum_probs=814.8
Q ss_pred hhhchhhhhhHHHHHHHHHHHHHHHHHHhhccCCcchhh--hhhhhHHHHHHHHHHHHHHHHHHhHhhhhhhccc-cccc
Q 001505 8 ELVSADKVLESVNVAFFIGLFTRLWIEILKRRRDDGYIL--MARRAAGLVIVLCNVLIFILYMGFGFYEYWNFRI-VSFK 84 (1065)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (1065)
...-.|.++..+..++++++....+....+++....+.. ........+.++|+....+++...+... ....+ .. +
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 107 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISL-FDMDEETD-L 107 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccccccc-c
Confidence 344456666677777776666655554432222211101 1113455556666666666653333222 11111 12 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhc-----cccccchhHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCCccchhhHH
Q 001505 85 SVSLVVTWALATVVALCSRYYRTLG-----EHKRWPLVLVLWWVVH---LVIVLVCVSVYLLTHLSSIGLPHILPEAKAV 156 (1065)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1065)
...+...+..+++..+++++.+.++ ++.++++.+++||++. +++.+ . ........+.. ....+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~~~~~~ 181 (1495)
T PLN03232 108 PPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDL-V---LPLKNSINRTA--LYLCISSR 181 (1495)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHH-H---HHHHHHHhccc--cceehhHH
Confidence 3344444556677766632222222 3567899999999998 65444 2 11122111100 01122222
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCCC----CCCc--cccchhhccCCCccccCCHhHHHHHHhHHHHHHhhccCCC
Q 001505 157 DFVSLPLLVLLCFNATYACCCARDPSDLDI----PLLR--EEDDEFLCKNISTFASAGVLSKITFHWLNQLFQRGRIQKL 230 (1065)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----p~~~--~~~~~~~~~~~~p~~~a~~~s~~~F~Wl~pll~~G~~~~L 230 (1065)
.+.+.+....+. .+.|..+.+ ... +..+ +.+..+.+.+++||++||+|||+||||+||++++|||++|
T Consensus 182 ~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L 255 (1495)
T PLN03232 182 CCQALFGILLLV----YIPELDPYP--GYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPI 255 (1495)
T ss_pred HHHHHHHHHHHH----hcccCCCCC--cccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 222221111100 111222210 010 0111 0011233467899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001505 231 ELLHIPPIPQSETANDASSLLEESLRKQKT-DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKH 309 (1065)
Q Consensus 231 ~~~Dl~~l~~~~~s~~~~~~f~~~w~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~ 309 (1065)
+.+|||+|+++|+++.+.++|++.|+++.+ +++++++++++++++.++..++++++..++.+++|++++.+++++.+++
T Consensus 256 ~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~ 335 (1495)
T PLN03232 256 TEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD 335 (1495)
T ss_pred ChhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998754 4589999999999999999999999999999999999999999997543
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC---CChHHHHHHHHhhHHHHH
Q 001505 310 DHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG---PSSGIIINMINVDVERIG 386 (1065)
Q Consensus 310 ~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~~iy~K~L~ls~~~---~~~G~ivnlms~D~~~i~ 386 (1065)
. ... ++.++++++++.++.+++.++|++...+++.++|..++..+|+|.++++... .++|+++|+|++|++++.
T Consensus 336 ~--~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~ 412 (1495)
T PLN03232 336 P--AWV-GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQ 412 (1495)
T ss_pred c--cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHH
Confidence 2 334 7777888888888888888888888899999999999999999999998753 379999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001505 387 DFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRV 466 (1065)
Q Consensus 387 ~~~~~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~ 466 (1065)
+++..+|.+|..|++++++++++|..+| ++++++++++++++|++..+++++++.+++.++.+|+|.+.++|+++|||+
T Consensus 413 ~~~~~l~~l~~~p~~ii~~~~~l~~~lg-~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~ 491 (1495)
T PLN03232 413 QIAEQLHGLWSAPFRIIVSMVLLYQQLG-VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDT 491 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 888888888888888999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Q 001505 467 LKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPI 546 (1065)
Q Consensus 467 IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl 546 (1065)
||+|+||+.+.+++++.|++|.+..++.....+...++....|.++.+++|+++.+.++++|++.+|+++++++.+..|+
T Consensus 492 IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl 571 (1495)
T PLN03232 492 VKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPL 571 (1495)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888777777666667788888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcE
Q 001505 547 YNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSK 625 (1065)
Q Consensus 547 ~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~ 625 (1065)
..+|..+..+.++++|++||++|++.+++.+... .+.......|+++|++|+|+++ +++++|+| |++|++||+
T Consensus 572 ~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~-~~~~~~~~~I~~~~vsF~y~~~-----~~~~vL~~inl~i~~Ge~ 645 (1495)
T PLN03232 572 NMLPNLLSQVVNANVSLQRIEELLLSEERILAQN-PPLQPGAPAISIKNGYFSWDSK-----TSKPTLSDINLEIPVGSL 645 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-CCcCCCCCcEEEEeeEEEcCCC-----CCCceeeeeEEEEcCCCE
Confidence 9999999999999999999999998766221111 1111123469999999999864 34689999 999999999
Q ss_pred EEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHh
Q 001505 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (1065)
Q Consensus 626 vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~ 705 (1065)
++||||||||||||+++|+||++|.+|.+..++|+||||||+||||||||||||+||+++|+++|++|+++|+|++|++.
T Consensus 646 vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~ 725 (1495)
T PLN03232 646 VAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDL 725 (1495)
T ss_pred EEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHh
Confidence 99999999999999999999999999987688999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc
Q 001505 706 WADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA 785 (1065)
Q Consensus 706 Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~ 785 (1065)
||+||+|+|||+|.||||||||||+||||+|+|||||||||||||||+||+++|+++|+++.+++||+|+||||+++++.
T Consensus 726 Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~ 805 (1495)
T PLN03232 726 LPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPL 805 (1495)
T ss_pred CCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CCEEEEEeCCEEEEecCHHHHHhhcchHHHHHHHHhhhcccCCCCCCccccccc-CcccccchhhhhccCCC-CCCCCCC
Q 001505 786 ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVNPPQEDKCLSR-VPCQMSQITEERFARPI-SCGEFSG 863 (1065)
Q Consensus 786 aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~ 863 (1065)
||+|++|+||+|+++|+|+||++ .++.|.+++..+....+..+..++.+.... .+..+....+++..... .+.....
T Consensus 806 aD~Ii~L~~G~i~~~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1495)
T PLN03232 806 MDRIILVSEGMIKEEGTFAELSK-SGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSV 884 (1495)
T ss_pred CCEEEEEeCCEEEEecCHHHHHh-cchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccchhh
Confidence 99999999999999999999998 888898887654421111000000000000 00000000000000000 0111223
Q ss_pred CCcchhhhcCcccHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhchhhhheeeccccC--CCChhHHHHHHHHHHHHHH
Q 001505 864 RSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKR--KVSREQLIGVFIFLSGGSS 941 (1065)
Q Consensus 864 l~~~E~r~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~~~--~~~~~~~l~vY~~l~~~~~ 941 (1065)
+.++|++++|.|+|++|+.|+++.++++.+.+++++.++.+++.+++++|+++|++++. ..+..+|+++|++++++..
T Consensus 885 ~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~ 964 (1495)
T PLN03232 885 LVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQV 964 (1495)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHH
Confidence 56788999999999999999999776666666666777888899999999999985321 2335689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001505 942 FFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIIL 1021 (1065)
Q Consensus 942 ~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~v 1021 (1065)
++.+++.+++...+.++++++|++|+++++|+||+|||++|+|||+|||++|++.||..+|..+..++..++.+++++++
T Consensus 965 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1044 (1495)
T PLN03232 965 AVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFAL 1044 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhc
Q 001505 1022 MSQAAWQVFPLFLVILGISIWYQARKLSISRIILFH 1057 (1065)
Q Consensus 1022 i~~~~~~~~~~~ipl~~~~~~iq~~Yl~tsReL~~~ 1057 (1065)
++..+|..+++++|+.+++++++++|.+++|++++.
T Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 1080 (1495)
T PLN03232 1045 IGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRL 1080 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777888898888889999999999999654
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9.6e-131 Score=1300.46 Aligned_cols=846 Identities=30% Similarity=0.512 Sum_probs=734.9
Q ss_pred cCCCccccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcc------------------
Q 001505 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT------------------ 260 (1065)
Q Consensus 199 ~~~~p~~~a~~~s~~~F~Wl~pll~~G~~~~L~~~Dl~~l~~~~~s~~~~~~f~~~w~~~~~------------------ 260 (1065)
.+.+||++||++||++|||+||++++|||++|+.+|||+++++++++.++++|++.|+++.+
T Consensus 199 ~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 278 (1522)
T TIGR00957 199 PNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSK 278 (1522)
T ss_pred CCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 35689999999999999999999999999999999999999999999999999999986510
Q ss_pred ------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Q 001505 261 ------------------------DATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHY 316 (1065)
Q Consensus 261 ------------------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~ 316 (1065)
++++++++++++||+.++..++++++..++.+++|++++.+++++.+++.. ...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~- 356 (1522)
T TIGR00957 279 PKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAP-DWQ- 356 (1522)
T ss_pred ccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cch-
Confidence 236799999999999999999999999999999999999999999765432 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---ChHHHHHHHHhhHHHHHHHHHHHH
Q 001505 317 GLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIIINMINVDVERIGDFFLYIH 393 (1065)
Q Consensus 317 g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~~iy~K~L~ls~~~~---~~G~ivnlms~D~~~i~~~~~~~~ 393 (1065)
||++++++++..++.+++.++|+|...++++++|++++..||+|+|+++...+ ++|+++|+|++|++++.++..++|
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~ 436 (1522)
T TIGR00957 357 GYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYIN 436 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999987543 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchH
Q 001505 394 RIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE 473 (1065)
Q Consensus 394 ~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE 473 (1065)
.+|..|++++++++++|..+| +++++++++++++++++..++++.+++++++++.+|+|++.++|+++|||+||+|+||
T Consensus 437 ~~~~~~~~i~~~~~ll~~~~g-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e 515 (1522)
T TIGR00957 437 MIWSAPLQVILALYFLWLNLG-PSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWE 515 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 474 QEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILL--KTPLTSGAVLSALATFRILQEPIYNLPE 551 (1065)
Q Consensus 474 ~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~--~~~Lt~~~~ft~l~l~~~l~~pl~~l~~ 551 (1065)
+.|.+++++.|++|++..++..+......+.+...|.++.+++|++|.+. ++.++++.+|++++++++++.|+..+|.
T Consensus 516 ~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~ 595 (1522)
T TIGR00957 516 LAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPM 595 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888777777777778888888899988876 4679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCC-CCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEE
Q 001505 552 LISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSK-ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAV 628 (1065)
Q Consensus 552 ~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~~~~-~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaI 628 (1065)
.+..+.++++|++||++|++.++ +++..+..... .....|+++|++|+|+++ ++++|+| |+++++||+++|
T Consensus 596 ~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~isl~i~~G~~v~I 669 (1522)
T TIGR00957 596 VISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD------LPPTLNGITFSIPEGALVAV 669 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC------CCceeeeeEEEEcCCCEEEE
Confidence 99999999999999999998766 22211111111 112379999999999753 3579999 999999999999
Q ss_pred ECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcC
Q 001505 629 CGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWAD 708 (1065)
Q Consensus 629 vG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~ 708 (1065)
+||+|||||||+++|+|+++|.+|+| .++|++|||||+||+|++||||||+||.++|+++|++++++|+|.+|++.+|+
T Consensus 670 vG~~GsGKSTLl~~l~g~~~~~~G~i-~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 748 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMDKVEGHV-HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPS 748 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCccCCcEE-EECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHH--hhhcCCcEEEEEcCCcchhhcC
Q 001505 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL--MGLLSQKTVLYTTHQLEFLDAA 786 (1065)
Q Consensus 709 Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i--~~ll~~kTvIlVTH~l~~l~~a 786 (1065)
||+|+|||+|.+|||||||||+||||+|++||||||||||||||+++++++++.++ +++++++|+|+|||+++.++.|
T Consensus 749 g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 749 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred CCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 99999999999999999999999999999999999999999999999999999887 4577899999999999999999
Q ss_pred CEEEEEeCCEEEEecCHHHHHhhcchHHHHHHHHhhhcccCC--CCC------Ccccccc--c----------Ccccc--
Q 001505 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV--NPP------QEDKCLS--R----------VPCQM-- 844 (1065)
Q Consensus 787 D~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~--~~~------~~~~~~~--~----------~~~~~-- 844 (1065)
|+|++|+||+|++.|+|+|+.+ .++.|.++...+....+.. ++. .+.+... + ++..+
T Consensus 829 D~ii~l~~G~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1522)
T TIGR00957 829 DVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQL 907 (1522)
T ss_pred CEEEEecCCeEEeeCCHHHHHh-cchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999999999998 7788888876442211100 000 0000000 0 00000
Q ss_pred ---cc-hhhh-h----c---cCCCCCCCCCCCCcchhhhcCcccHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhchhh
Q 001505 845 ---SQ-ITEE-R----F---ARPISCGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNY 912 (1065)
Q Consensus 845 ---~~-~~~~-~----~---~~~~~~~~~~~l~~~E~r~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 912 (1065)
.. .... + . ...+.++...++.++|+++.|+|++++|+.|++++ |++.+++++++.++.+++.++++|
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 986 (1522)
T TIGR00957 908 SASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAI-GLFITFLSIFLFVCNHVSALASNY 986 (1522)
T ss_pred cccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 0 0 00000001123456788899999999999999987 445555556666778888999999
Q ss_pred hheeecccc----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHH
Q 001505 913 WIAWATDEK----RKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILN 988 (1065)
Q Consensus 913 Wl~~~~~~~----~~~~~~~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlN 988 (1065)
|+++|+++. +..+...|+++|++++++..++.+++.+++...+.++++++|++|+++++++||+|||++|+|||+|
T Consensus 987 ~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~iln 1066 (1522)
T TIGR00957 987 WLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVN 1066 (1522)
T ss_pred HHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHH
Confidence 999998532 1223457889999999999999999888889999999999999999999999999999999999999
Q ss_pred HhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 001505 989 RCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQARKLSISRIILF 1056 (1065)
Q Consensus 989 RfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~iq~~Yl~tsReL~~ 1056 (1065)
||++|++.+|..+|..+..++..++.+++.+++++...|+++++++|+++++++++++|.+++||+++
T Consensus 1067 R~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 1134 (1522)
T TIGR00957 1067 RFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKR 1134 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888889888999999999999999865
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.4e-127 Score=1262.87 Aligned_cols=849 Identities=24% Similarity=0.389 Sum_probs=723.9
Q ss_pred CCCccccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhc---cCCCChHHHHHHHHHHH
Q 001505 200 NISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQK---TDATSLPQVIIHAVWKS 276 (1065)
Q Consensus 200 ~~~p~~~a~~~s~~~F~Wl~pll~~G~~~~L~~~Dl~~l~~~~~s~~~~~~f~~~w~~~~---~~~~~l~~~l~~~~~~~ 276 (1065)
+.+||++||+|||++|||+||++++|||++|+.+|||+|+++++++.+.++|++.|+++. .++++++++++++|++.
T Consensus 2 ~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~ 81 (1490)
T TIGR01271 2 QRSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWR 81 (1490)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999999998753 24589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 277 LALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVL 356 (1065)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~~ 356 (1065)
+++.++++++..++.+++|++++.+++|+++.+...... |+.++++++++.++.+++.+++.|...++++++|+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~ 160 (1490)
T TIGR01271 82 FVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREI-AYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996433211233 8888888899999999999999999999999999999999
Q ss_pred HHHHHhccccCC---CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001505 357 IYKRSMAIKFAG---PSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433 (1065)
Q Consensus 357 iy~K~L~ls~~~---~~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~~~ 433 (1065)
||+|.++++... .++|+++|+|++|++++.+++.++|.+|..|+++++++++||..+| +++++++++++++++++.
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999997653 2789999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWASPTLVS 513 (1065)
Q Consensus 434 ~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~ 513 (1065)
++++++.++++++|+++|+|++.++|+++|||+||+|+||+.|.+++++.|+.|++.+++..+......++++..|.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887777778888899999
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEE
Q 001505 514 VITFGVCILLKTPLTSGAVLSALATFRILQEPIY-NLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAID 592 (1065)
Q Consensus 514 ~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~-~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~ 592 (1065)
+++|++|.+.++ ++++.+|+++++|++++.|+. .+|..+..+.++.+|++||++||+.+|.++... ......|+
T Consensus 320 ~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~----~~~~~~i~ 394 (1490)
T TIGR01271 320 FLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY----NLTTTEVE 394 (1490)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----cCCCCceE
Confidence 999999988754 789999999999999999985 799999999999999999999998876321110 11124699
Q ss_pred EeeeEEEeccccc---------c-----cC------------CCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhC
Q 001505 593 IEAGEYAWDAREE---------N-----FK------------KPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG 645 (1065)
Q Consensus 593 ~~n~sfsw~~~~~---------~-----~~------------~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlG 645 (1065)
++|++|+|+.... . .+ ..+++|+| |++|++|++++|+||+|||||||+++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 9999999964200 0 00 02467999 99999999999999999999999999999
Q ss_pred cccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 646 EIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 646 e~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+++|.+|+| .++|++|||+|+||+|++||||||+||.++++++|++++++|+|++|++.+|+||+|+|||+|.+|||||
T Consensus 475 ~~~~~~G~i-~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGq 553 (1490)
T TIGR01271 475 ELEPSEGKI-KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQ 553 (1490)
T ss_pred CCCCCCceE-EECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
||||+||||+|++||||||||||||||++++++++++|+.++++++|+|+|||+++.++.||+|++|++|+|++.|+++|
T Consensus 554 kqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 554 RARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHhh---h---c--------------cc--C-----C-C-------CCCcc-c--------------
Q 001505 806 LIADQNSELVRQMKAHR---K---S--------------LD--Q-----V-N-------PPQED-K-------------- 835 (1065)
Q Consensus 806 L~~~~~~~~~~l~~~~~---~---~--------------~~--~-----~-~-------~~~~~-~-------------- 835 (1065)
+.+ .+..|.+.+.... + . .+ . . + +..+. .
T Consensus 634 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 634 LQA-KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHh-cChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 997 6666666553100 0 0 00 0 0 0 00000 0
Q ss_pred ----------------c-cc--cCcc--------c----------ccc----------hh--------h-----h-h---
Q 001505 836 ----------------C-LS--RVPC--------Q----------MSQ----------IT--------E-----E-R--- 851 (1065)
Q Consensus 836 ----------------~-~~--~~~~--------~----------~~~----------~~--------~-----~-~--- 851 (1065)
. .. .++. . ... .. . . +
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 0 00 0000 0 000 00 0 0 0
Q ss_pred ---ccC-------------------C-CC------------CCCCCCCCcchhhhcCcccHHHHHHHHHHhchhhHHHHH
Q 001505 852 ---FAR-------------------P-IS------------CGEFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVI 896 (1065)
Q Consensus 852 ---~~~-------------------~-~~------------~~~~~~l~~~E~r~~G~V~~~vy~~Y~~~~~g~~~~~~~ 896 (1065)
..+ . .+ +.....++++|+++.|.|+|++|+.|++++|++++++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 000 0 00 000012355678889999999999999987665555555
Q ss_pred HHHHHHHHHHHhchhhhheeecccc--------CC------------C-ChhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 897 LLCQVLFQALQMGSNYWIAWATDEK--------RK------------V-SREQL-IGVFIFLSGGSSFFILGRAVLLATI 954 (1065)
Q Consensus 897 ~~~~~~~~~~~~~~~~Wl~~~~~~~--------~~------------~-~~~~~-l~vY~~l~~~~~~~~~~~~~~~~~~ 954 (1065)
+++.++.+++..+++||+++|.... +. . ...+| +++|++++++..++.+++.+++...
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788999999999998775311 10 0 11233 5566666666677788899999999
Q ss_pred HHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 955 AIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFL 1034 (1065)
Q Consensus 955 ~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~i 1034 (1065)
+.++++++|++|+++++++|++|||+||+|||+|||++|++.+|..+|..+..++.+++.+++.++++++..|+++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhc
Q 001505 1035 VILGISIWYQARKLSISRIILFH 1057 (1065)
Q Consensus 1035 pl~~~~~~iq~~Yl~tsReL~~~ 1057 (1065)
|+++++++++++|++++||+++.
T Consensus 1033 ~l~~~~~~~~~~~~~~~r~l~~~ 1055 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRTSQQLKQL 1055 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999763
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1e-116 Score=1163.71 Aligned_cols=853 Identities=26% Similarity=0.405 Sum_probs=725.9
Q ss_pred cCCCccccCCHhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhcc------------------
Q 001505 199 KNISTFASAGVLSKITFHWLNQLFQRGRIQKLELLHIPPIPQSETANDASSLLEESLRKQKT------------------ 260 (1065)
Q Consensus 199 ~~~~p~~~a~~~s~~~F~Wl~pll~~G~~~~L~~~Dl~~l~~~~~s~~~~~~f~~~w~~~~~------------------ 260 (1065)
..+.||++||||.++++.|++|.+.+..|..|+++|+|+...+.++-++..++.+..+++..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 34589999999999999999999999999999999999999999987666555543221100
Q ss_pred ---------------------------------C----------------------------------------------
Q 001505 261 ---------------------------------D---------------------------------------------- 261 (1065)
Q Consensus 261 ---------------------------------~---------------------------------------------- 261 (1065)
+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 0
Q ss_pred --------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Q 001505 262 --------------ATSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFA 327 (1065)
Q Consensus 262 --------------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~ 327 (1065)
..++++++++++|+.++..++++++..++.+++|++++.+++++++++. .+.+|++++++++++
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~--~~~~g~~l~~~l~~~ 294 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA--TWGRGLGLVLTLFLT 294 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHH
Confidence 0368999999999999999999999999999999999999999976542 333478888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001505 328 KTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAG-----PSSGIIINMINVDVERIGDFFLYIHRIWLLPVQV 402 (1065)
Q Consensus 328 ~~~~~l~~~~~~~~~~r~~~~iR~~L~~~iy~K~L~ls~~~-----~~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i 402 (1065)
.++.+++.+++++...+.+.++|++|...+|+|+++++..+ .++|+++|+|++|++++.+++.++|.+|..|+++
T Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~l 374 (1560)
T PTZ00243 295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987643 2789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH
Q 001505 403 FLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (1065)
Q Consensus 403 ~~al~lL~~~lg~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~ 482 (1065)
++++++||+.+| +++++|+++++++++++.++++++.++++++|+++|+|++.++|+++|||+||++|||+.|.+++++
T Consensus 375 i~~~~lL~~~lG-~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~ 453 (1560)
T PTZ00243 375 LLSILLLSRLVG-WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED 453 (1560)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 483 LREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVS 562 (1065)
Q Consensus 483 ~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs 562 (1065)
.|++|++.+++..+..+...++.+..|.++.+++|++|.+.+++||++.+|+++++|++++.|+.++|..++.+.++.+|
T Consensus 454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS 533 (1560)
T PTZ00243 454 KRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccC-CCCCC----CC-------C------------------C-----------------------------
Q 001505 563 LYRIQEFIKEDN-QKKPI----TE-------P------------------T----------------------------- 583 (1065)
Q Consensus 563 ~~RI~~fL~~~e-~~~~~----~~-------~------------------~----------------------------- 583 (1065)
++||++||+.+| ..+.. +. . +
T Consensus 534 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1560)
T PTZ00243 534 IKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPT 613 (1560)
T ss_pred HHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 999999998765 11000 00 0 0
Q ss_pred CCCCCccEEEeeeEEEecccccc-------------------------------c-CCCcccccC-CeEeeCCcEEEEEC
Q 001505 584 SKASDVAIDIEAGEYAWDAREEN-------------------------------F-KKPTIKLTD-KMKIMKGSKVAVCG 630 (1065)
Q Consensus 584 ~~~~~~~I~~~n~sfsw~~~~~~-------------------------------~-~~~~~~L~~-nl~i~~G~~vaIvG 630 (1065)
.....+.+.++|++|+|+..... . ..++++|+| |++|++|++++|+|
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG 693 (1560)
T PTZ00243 614 KRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLG 693 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEEC
Confidence 00011246677777776531100 0 012457888 99999999999999
Q ss_pred CCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCC
Q 001505 631 SVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGD 710 (1065)
Q Consensus 631 ~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd 710 (1065)
|+|||||||+++|+|+++|++|+| .+++++|||||+||+|++||+|||+||.++|+++|++++++|+|++|++.+|+||
T Consensus 694 ~nGsGKSTLL~~i~G~~~~~~G~i-~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 772 (1560)
T PTZ00243 694 ATGSGKSTLLQSLLSQFEISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGL 772 (1560)
T ss_pred CCCCcHHHHHHHHhcCCCCCCcEE-EECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccc
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEE
Q 001505 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1065)
Q Consensus 711 ~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Il 790 (1065)
+|++||+|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.++++|+|+|||+++.++.||+|+
T Consensus 773 ~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999887778999999999999999999999
Q ss_pred EEeCCEEEEecCHHHHHhhcchHHHHHHHHhhhcccCCC--CCCcccccccCc---cc-ccchhhhhc--cC---CCCCC
Q 001505 791 VMKDGKIEQSGKYEDLIADQNSELVRQMKAHRKSLDQVN--PPQEDKCLSRVP---CQ-MSQITEERF--AR---PISCG 859 (1065)
Q Consensus 791 vl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~---~~-~~~~~~~~~--~~---~~~~~ 859 (1065)
+|++|+|++.|+|+|+++ . +.|.++........+..+ ...+.+.....+ .+ ......+.. +. ...+.
T Consensus 853 ~l~~G~i~~~G~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1560)
T PTZ00243 853 ALGDGRVEFSGSSADFMR-T-SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDA 930 (1560)
T ss_pred EEECCEEEEecCHHHHHh-C-hHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999987 4 356666544221111000 000000000000 00 000000000 00 00111
Q ss_pred CCCCCCcchhhhcCcccHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhchhhhheeeccccCCCChhHHHHHHHHHHHH
Q 001505 860 EFSGRSQDEDTELGRVKWTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDEKRKVSREQLIGVFIFLSGG 939 (1065)
Q Consensus 860 ~~~~l~~~E~r~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~l~vY~~l~~~ 939 (1065)
..+++.++|+++.|.|+|++|+.|+++.|+..++.+++++.++.+++..++++|+++|+++....+...|+++|++++++
T Consensus 931 ~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~ 1010 (1560)
T PTZ00243 931 AAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLL 1010 (1560)
T ss_pred ccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHH
Confidence 22456677889999999999999999986665555555666777888899999999998544344556899999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001505 940 SSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSII 1019 (1065)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i 1019 (1065)
..++.+++.+.....+.++++++|++|+++++++|++|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.+
T Consensus 1011 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1011 GTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhc
Q 001505 1020 ILMSQAAWQVFPLFLVILGISIWYQARKLSISRIILFH 1057 (1065)
Q Consensus 1020 ~vi~~~~~~~~~~~ipl~~~~~~iq~~Yl~tsReL~~~ 1057 (1065)
++++...|.++++++|+++++++++++|.+++||+++.
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~ 1128 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRI 1128 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888899999999999999763
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-84 Score=796.52 Aligned_cols=754 Identities=19% Similarity=0.210 Sum_probs=551.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHD-H---SSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRV 349 (1065)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~---~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~i 349 (1065)
+..+.++.+.++++.+...+.-++...+.+.+..... . ....+++.+...-+...+...+...+|++...|...|+
T Consensus 27 ~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~ri 106 (1228)
T KOG0055|consen 27 YLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARI 106 (1228)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544444455666666543221 0 01122222221111122222344567889999999999
Q ss_pred HHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001505 350 RSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1065)
Q Consensus 350 R~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~-----~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~ 424 (1065)
|......+.+|...+.+.. .+|++.+.|+.|+++|++.+. .+|.+-.....++++.+. +|..+++.+..
T Consensus 107 R~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~-----~W~Ltlv~l~~ 180 (1228)
T KOG0055|consen 107 RSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY-----GWKLTLVMLSF 180 (1228)
T ss_pred HHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 9999999999888776544 449999999999999999874 233333322222223222 55677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL 504 (1065)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~ 504 (1065)
.+++.......++.+.+...+.+++..+..+...|.+++||+|-.|+-|+...++..+.-+.-.+.-.+......+....
T Consensus 181 ~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~ 260 (1228)
T KOG0055|consen 181 IPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGF 260 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888888889999999999999999999999999999999999999998877766654333333322222222222211
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCC
Q 001505 505 --FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ--KKPIT 580 (1065)
Q Consensus 505 --~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~--~~~~~ 580 (1065)
++........++||..++..+..++|++++++...-+-...+.+..+.+..+.+++++..+|.+.++..++ +....
T Consensus 261 ~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~ 340 (1228)
T KOG0055|consen 261 TFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKG 340 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccccc
Confidence 22233445667888888888889999999998777777788888888999999999999999999987662 22212
Q ss_pred CCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC
Q 001505 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1065)
Q Consensus 581 ~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g 659 (1065)
.......++.|+|+|++|+||.+ ++.++|++ ||+||+|+.||+||||||||||++++|.|+|+|++|+| .+||
T Consensus 341 ~~~~~~~~g~ief~nV~FsYPsR-----pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V-~idG 414 (1228)
T KOG0055|consen 341 GRVLSSIKGEIEFRNVCFSYPSR-----PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV-LIDG 414 (1228)
T ss_pred CCcccccccceEEEEEEecCCCC-----CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceE-EEcC
Confidence 22333456889999999999998 66789999 99999999999999999999999999999999999999 9998
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+|+.|+|+|.+|++||+|||.||+|. ++++.+++.+++..++++..||+|++|.+||+|..|||||
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQ 494 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQ 494 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHH
Confidence 58999999999999999999999974 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
|||||||||+.+||+||||||||||||++.++ +.++++..+.+|||+|+||||++++++||+|+||++|+|+|.|+|+|
T Consensus 495 KQRIAIARalv~~P~ILLLDEaTSaLD~~se~-~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 495 KQRIAIARALVRNPKILLLDEATSALDAESER-VVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCHHHHH-HHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999965 66999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHhhhcccCCC-CCCcccccc-cCc---ccccchhhhh---ccC----CCCCCCCCCCCcchhhhcC
Q 001505 806 LIADQNSELVRQMKAHRKSLDQVN-PPQEDKCLS-RVP---CQMSQITEER---FAR----PISCGEFSGRSQDEDTELG 873 (1065)
Q Consensus 806 L~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~---~~~~~~~~~~---~~~----~~~~~~~~~l~~~E~r~~G 873 (1065)
|++ .++.|.++++.|+......+ +.+++.... ... ........+. ... ++.+... ....+|+ -
T Consensus 574 Li~-~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~---~ 648 (1228)
T KOG0055|consen 574 LIA-LGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPE-EPVSEED---E 648 (1228)
T ss_pred HHh-ccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccc-ccccccc---c
Confidence 999 77999999988754432211 000000000 000 0000000000 000 0000000 0001111 1
Q ss_pred cccHHHHHHHHHHhch-hhHHHHHHHHHHHHH----HHHhchhhhhe-eeccccC--CCChhHHHHHHHHHHHHHHHHHH
Q 001505 874 RVKWTVYSAFITLVYK-GALVPVILLCQVLFQ----ALQMGSNYWIA-WATDEKR--KVSREQLIGVFIFLSGGSSFFIL 945 (1065)
Q Consensus 874 ~V~~~vy~~Y~~~~~g-~~~~~~~~~~~~~~~----~~~~~~~~Wl~-~~~~~~~--~~~~~~~l~vY~~l~~~~~~~~~ 945 (1065)
.++ +++-++.+.+ |.++++-+++.++.. ++...-..-+. +...+++ ..+...|..+|+++|+.+.++.+
T Consensus 649 ~~s---~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 649 KVS---FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccc---HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3444433322 222222222222111 11111111111 1111111 12234599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--cChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 946 GRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMS 1023 (1065)
Q Consensus 946 ~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~--tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~ 1023 (1065)
+..++|.+.|.+.+++++..++++++|.+++|||. |. |+|.+|+++|...|...+...+..+++++..++..+++..
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999995 56 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 001505 1024 QAAWQVFPL---FLVILGISIWYQARKLS 1049 (1065)
Q Consensus 1024 ~~~~~~~~~---~ipl~~~~~~iq~~Yl~ 1049 (1065)
+.+|.+.++ +.|++++..++|.+++.
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~ 833 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLK 833 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998655 57888888777766654
No 8
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-82 Score=743.82 Aligned_cols=544 Identities=23% Similarity=0.315 Sum_probs=445.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSG-KHDHSSY-HYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1065)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~~-~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1065)
++.+.+..|+.+..+.++.++..+.....|.+++.++|.+.. .+..... .....++++.+...+...+....+.+...
T Consensus 138 l~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~ 217 (716)
T KOG0058|consen 138 LLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGE 217 (716)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999999999999999998876 2221111 11223333334444444444444555567
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001505 344 RIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1065)
Q Consensus 344 r~~~~iR~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l 422 (1065)
|+..|+|..+...+.++-+.... ...+||++++++.|++.+.+.+. ++.+..-+.++.+.++.+++. +.|-.++..+
T Consensus 218 rv~~rlR~~lF~sil~QdiaFFD-~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~-~S~~Ltlv~~ 295 (716)
T KOG0058|consen 218 RVVARLRTDLFRSLLRQDIAFFD-ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS-LSWRLTLVTL 295 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhc-cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-hhHHHHHHHH
Confidence 77777777666666555554332 33799999999999999988764 567777777777777666553 2324556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 001505 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQE----FLKKLLRLREIERDSLKKYLYTC 498 (1065)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~----f~~~i~~~R~~E~~~l~~~~~~~ 498 (1065)
+.+.+++.+...+++..++..++.+++..+..+...|.|++||+||+|+-|+. |.+++++.++.- +|.....
T Consensus 296 i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~----~k~a~a~ 371 (716)
T KOG0058|consen 296 IVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLS----KKEAVAY 371 (716)
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHh
Confidence 77778888889999999999999999999999999999999999999999975 444444443332 2222222
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001505 499 SAIAF--LFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK 576 (1065)
Q Consensus 499 ~~~~~--~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~ 576 (1065)
..... -+......++++.+|.+++.++.||+|...+++.+-..+..++..+...++.++++..+.+|+.++++.+++-
T Consensus 372 ~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i 451 (716)
T KOG0058|consen 372 GIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRI 451 (716)
T ss_pred hHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCC
Confidence 11111 1112234667788999999999999999999999999999999999999999999999999999999988722
Q ss_pred C-CCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcE
Q 001505 577 K-PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1065)
Q Consensus 577 ~-~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i 654 (1065)
+ .....|. ...+.|+|+||+|+||.+ ++.++++| ||+|+|||.||+||||||||||+.++|+++|+|++|+|
T Consensus 452 ~~~G~~~p~-~~~G~IeF~~VsFaYP~R-----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 452 PLTGTLAPD-HLQGVIEFEDVSFAYPTR-----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCccccc-cccceEEEEEeeeecCCC-----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 1 1222232 456889999999999998 77899999 99999999999999999999999999999999999999
Q ss_pred EEECC-------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 655 IKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 655 ~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.+|| +||+|.|||.||++||+|||.||.+ .++|+.+++.+.|..+++|..||+|++|.|||||..
T Consensus 526 -llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 526 -LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred -EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 9999 4999999999999999999999987 577889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEe
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~ 800 (1065)
|||||||||||||||++||.|+||||+|||||++.| +++++++...++++|||+|+||++++++||+|+|+++|+|+|.
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE-~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESE-YLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH-HHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 999999999999999999999999999999999996 5679999999999999999999999999999999999999999
Q ss_pred cCHHHHHhhcchHHHHHHHHhhh
Q 001505 801 GKYEDLIADQNSELVRQMKAHRK 823 (1065)
Q Consensus 801 Gt~~eL~~~~~~~~~~l~~~~~~ 823 (1065)
|+|+||++..++.|.++++.+..
T Consensus 684 G~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 684 GTHDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred ccHHHHhhCcccHHHHHHHHhcc
Confidence 99999999555899999987653
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.6e-79 Score=748.76 Aligned_cols=543 Identities=19% Similarity=0.257 Sum_probs=424.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1065)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1065)
+.++.+.+.+++.+++..++.++..++..+.|++++.++|.+..++.. ... .+.++.++++..++..++.....+...
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REA-LLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999999999999976421111 111 222233333444455555555555667
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001505 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1065)
Q Consensus 344 r~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l 419 (1065)
+.+.++...++..+|+|.++++.. .+++|+++|++++|++++++++. .+..++...+..++++++++. ++|..++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l 167 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 888999999999999999998764 33899999999999999998764 455666555555544444432 3324444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH----HHHHHHHHHHHHHH
Q 001505 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLL----RLREIERDSLKKYL 495 (1065)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~----~~R~~E~~~l~~~~ 495 (1065)
+.++.+++.+.+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.++++ +.++.+.+..+...
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666778888888899999999999999999999999999999998877764 44554444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 496 YTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSG---------AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRI 566 (1065)
Q Consensus 496 ~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~---------~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI 566 (1065)
.......+... .+.+ .++.++.+.+. +.+|.| .+++++.+...+..|+..++..+..+.+++++.+|+
T Consensus 248 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 248 LSSAVLEFFAS-ISIA-LVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHH-HHHH-HHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222211 1111 22233333333 444444 445555667778899999999999999999999999
Q ss_pred HHHhcccCCCCCCCCCC-CCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHh
Q 001505 567 QEFIKEDNQKKPITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL 644 (1065)
Q Consensus 567 ~~fL~~~e~~~~~~~~~-~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~Ll 644 (1065)
.++++.++.++.....+ .....+.|+++|++|.|+++ +++|+| |++|+|||++|||||||||||||+++|+
T Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~-------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~ 397 (588)
T PRK11174 325 VTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG-------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL 397 (588)
T ss_pred HHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 99998765221111111 11123469999999987643 578999 9999999999999999999999999999
Q ss_pred CcccCCCCcEEEECC-------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCC
Q 001505 645 GEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGD 710 (1065)
Q Consensus 645 Ge~~~~~G~i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd 710 (1065)
|++ |.+|+| .++| +|+||||+||||+|||||||++|+| .++++++++++.|++++|++.||+|+
T Consensus 398 g~~-p~~G~I-~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~ 475 (588)
T PRK11174 398 GFL-PYQGSL-KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGL 475 (588)
T ss_pred cCC-CCCcEE-EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccc
Confidence 999 899999 9998 5999999999999999999999975 89999999999999999999999999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEE
Q 001505 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1065)
Q Consensus 711 ~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Il 790 (1065)
+|.|||+|.||||||||||+||||+++||+|+||||||||||++|+++|. ++++++.++||+|+||||++++++||+|+
T Consensus 476 dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~-~~l~~~~~~~TvIiItHrl~~i~~aD~Ii 554 (588)
T PRK11174 476 DTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM-QALNAASRRQTTLMVTHQLEDLAQWDQIW 554 (588)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHhCCCEEEEEecChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999886 57888889999999999999999999999
Q ss_pred EEeCCEEEEecCHHHHHhhcchHHHHHHHHhhh
Q 001505 791 VMKDGKIEQSGKYEDLIADQNSELVRQMKAHRK 823 (1065)
Q Consensus 791 vl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~ 823 (1065)
+|++|+|+|+|+|+||++ .++.|.+++..+.+
T Consensus 555 vl~~G~i~e~G~~~eL~~-~~~~y~~l~~~q~~ 586 (588)
T PRK11174 555 VMQDGQIVQQGDYAELSQ-AGGLFATLLAHRQE 586 (588)
T ss_pred EEeCCeEeecCCHHHHHh-cchHHHHHHHHhhc
Confidence 999999999999999998 88899999876543
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.3e-78 Score=730.70 Aligned_cols=544 Identities=23% Similarity=0.281 Sum_probs=456.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1065)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1065)
.+.++..++.+|+.+...++..++..++..+.|++.+.++|.+-...+. .. ..++++++.+..+++.+....-.+..
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~-~t--L~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR-ST--LTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch-hH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888999999999999999999999999999999988765432 11 44556666666777776655555666
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001505 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAP 417 (1065)
Q Consensus 343 ~r~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~--~~~~w~~pl~i~~al~lL~~~lg~~~ 417 (1065)
..++.|+...+...+|+|.+++|.. .|++||++++++ |.++|.+++.. +..+...++-++... +++..-+ ..
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~-vm~~ys~-~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLA-VMFLYSW-KL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HH
Confidence 7899999999999999999999864 469999999988 99999998852 222233333333333 3333333 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (1065)
Q Consensus 418 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (1065)
++++++.+++.+.+..++.+..++..++.++...++.+...|.++||++||..+-|+.+..++++.-.+..+.-.+....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 77778888888888888889999999999999999999999999999999999999999999988766655544444333
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001505 498 CSAIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1065)
Q Consensus 498 ~~~~~~~~~~~p--~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1065)
...........+ .-+.+++||++.++++.+|.|.++++..+...+..|+..+.+....+++++++.+|+.+.++.|.+
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 333222222222 234567899999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCCC-CCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCc
Q 001505 576 KKPIT-EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1065)
Q Consensus 576 ~~~~~-~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~ 653 (1065)
.+... ....+..++.|+++|++|.|+.+ ++++|+| |++|++||++||||+||||||||+++|+|.|+|++|+
T Consensus 456 ~~~~~~~~~~~~~~g~I~~~nvsf~y~~~------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 456 QEGDKTLIHLPKLQGEIEFENVSFRYGPD------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred cccccccccccccCceEEEEEEEEEeCCC------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 22211 12233456789999999999976 3579999 9999999999999999999999999999999999999
Q ss_pred EEEECC-------------eEEEEecCCCCCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 654 i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
| .+|| +|+||+|++.+|+|||||||.+|.|. +.|+..++++.++.++||+.+|.|++|+|||+|.
T Consensus 530 I-~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 530 I-LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608 (709)
T ss_pred E-EECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 9 9998 49999999999999999999999986 4478888888889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e 799 (1065)
||||||||||+||||+++||+|+||||||||||+++++.|.+ .+....++||+|+||||++++++||+|+|||+|+|+|
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~-~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ-NLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH-HHHHHhcCCeEEEEEccchHhhhccEEEEccCCceec
Confidence 999999999999999999999999999999999999987755 5778888999999999999999999999999999999
Q ss_pred ecCHHHHHhhcchHHHHHHHHh
Q 001505 800 SGKYEDLIADQNSELVRQMKAH 821 (1065)
Q Consensus 800 ~Gt~~eL~~~~~~~~~~l~~~~ 821 (1065)
+|+|+||++ .++.|.+++..+
T Consensus 688 ~gs~~ell~-~~g~y~~l~~~q 708 (709)
T COG2274 688 QGSHEELLA-QGGLYARLYQQQ 708 (709)
T ss_pred cCCHHHHHH-hcChHHHHHhcc
Confidence 999999999 799999887643
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=8e-75 Score=722.39 Aligned_cols=538 Identities=20% Similarity=0.238 Sum_probs=431.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1065)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1065)
+++..++.+++.++...++.++..++..+.|++++.++|.+....+. . . .+.+++++++..++..+......+...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR-S-L-LVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh-h-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677888888888999999999999999999999987643321 1 1 2233334444444455554444556678
Q ss_pred HHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHhhhHHHH
Q 001505 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHR-IWLLPVQVFLALVILYKNLGAAPAF 419 (1065)
Q Consensus 345 ~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~-~w~~pl~i~~al~lL~~~lg~~~~l 419 (1065)
++.++...+...+|+|.++++.. .+++|+++++++ |++.+.+++.. +.. +...++ .++.+++++..-+ +.++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~l~l 279 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSW-KLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHH
Confidence 88999999999999999998753 459999999997 89999887642 222 333333 2333333433223 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1065)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1065)
+.++++++.+++...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.+++++..++..+...+......
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666777788888889999999999999999999999999999999999888877654444333333322222
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001505 500 AIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1065)
Q Consensus 500 ~~~~~~~~~p--~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~ 577 (1065)
....+..... ..+.++.+|.+.+.++.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 2222211111 12334567778778899999999999999999999999999999999999999999999998765221
Q ss_pred CCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEE
Q 001505 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1065)
Q Consensus 578 ~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~ 656 (1065)
.... ......+.|+++|++|+|+++ ++++|+| |++|++||++||+|+||||||||+++|+|+++|++|+| .
T Consensus 440 ~~~~-~~~~~~~~I~~~nvsf~Y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I-~ 511 (686)
T TIGR03797 440 EAKT-DPGKLSGAIEVDRVTFRYRPD------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV-F 511 (686)
T ss_pred cCcC-CCCCCCceEEEEEEEEEcCCC------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-E
Confidence 1111 111223579999999999754 3679999 99999999999999999999999999999999999999 9
Q ss_pred ECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 657 v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
+|| +++||||+|++|+|||||||.+|+|.++++++++++.|+++++++.+|+|++|.|||+|.||||
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 998 4899999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||||||+||||+|+||+|+||||||||||+++++++.+ .++.. ++|+|+||||++.++.||+|++|+||+|+|.|+|
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~-~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE-SLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999998865 46554 6899999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHH
Q 001505 804 EDLIADQNSELVRQMKA 820 (1065)
Q Consensus 804 ~eL~~~~~~~~~~l~~~ 820 (1065)
+||++ .++.|.+++..
T Consensus 669 ~~Ll~-~~~~y~~l~~~ 684 (686)
T TIGR03797 669 DELMA-REGLFAQLARR 684 (686)
T ss_pred HHHHh-CCcHHHHHHHh
Confidence 99998 88899988764
No 12
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-74 Score=721.36 Aligned_cols=535 Identities=19% Similarity=0.254 Sum_probs=414.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYG-LVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1065)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g-~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (1065)
.+++.+|+.+....++.++..++..+.|++++.++|.+.+..+....... +++++..++..++..+....+ .+.+
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 229 (711)
T TIGR00958 154 GLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSF----NYTM 229 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 34566777888888899999999999999999999988643321111101 111111122222222222222 3344
Q ss_pred HHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001505 347 IRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1065)
Q Consensus 347 ~~iR~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l 422 (1065)
.++...+...+|+|.++.+. ...++|+++|++++|++.+.+.+. .+..++...+.+++++++++. +++..+++.+
T Consensus 230 ~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l 308 (711)
T TIGR00958 230 ARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTL 308 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 45555555677778777654 234899999999999999988764 455566666666665555553 3324455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 423 FSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA 502 (1065)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~ 502 (1065)
+.+++...+...+.++.++..++.++..++..+...|.++|+++||.|++|+.+.+++++..++-.+..++.....+...
T Consensus 309 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (711)
T TIGR00958 309 INLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666677788888888888889999999999999999999999999998777666544332222222211111111
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 001505 503 FLFW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPIT 580 (1065)
Q Consensus 503 ~~~~--~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~ 580 (1065)
.... .....+.++.++.+.+..+.+|.|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.+++.+...
T Consensus 389 ~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 468 (711)
T TIGR00958 389 WTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG 468 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 1111 11122344567778888899999999999999999999999999999999999999999999998765221111
Q ss_pred CCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC
Q 001505 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1065)
Q Consensus 581 ~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g 659 (1065)
.....+..+.|+++|++|+|+++ +++++|+| |++|+|||++|||||||||||||+++|+|+++|++|+| .+||
T Consensus 469 ~~~~~~~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~idg 542 (711)
T TIGR00958 469 TLAPLNLEGLIEFQDVSFSYPNR-----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV-LLDG 542 (711)
T ss_pred CCCCCCCCCeEEEEEEEEECCCC-----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-EECC
Confidence 11111234579999999999865 34689999 99999999999999999999999999999999999999 9998
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+++||||+|++|+|||||||.+|.+ .++++++++++.|+++++++.+|+|+||.+||+|.+|||||
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 5899999999999999999999975 67889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
||||+||||+++||+|+||||||||||+++++.+.+ ....++||+|+||||++.++.||+|++|+||+|+|+|+|+|
T Consensus 623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHH
Confidence 999999999999999999999999999999988765 23357899999999999999999999999999999999999
Q ss_pred HHhhcchHHHHH
Q 001505 806 LIADQNSELVRQ 817 (1065)
Q Consensus 806 L~~~~~~~~~~l 817 (1065)
|++ +++.|.++
T Consensus 700 L~~-~~~~y~~l 710 (711)
T TIGR00958 700 LME-DQGCYKHL 710 (711)
T ss_pred HHh-CCCchHhc
Confidence 998 77778765
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.6e-75 Score=725.62 Aligned_cols=538 Identities=16% Similarity=0.213 Sum_probs=436.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1065)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1065)
.++..++.+++.+....+..++..++..+.|++++.++|.+...... .. .+.++++++++.++..+......+...+
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ-DW--LRPLLLGMGLTALLQGVLTWLQLYYLRR 220 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888888999999999999999999977543321 11 2333334444445555555555556778
Q ss_pred HHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001505 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1065)
Q Consensus 345 ~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~ 420 (1065)
++.++...+...+|+|.++++.. .+++|+++++++.| +.+.+++. .+.......+.+++.+++++..-+ +.+++
T Consensus 221 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li 298 (710)
T TIGR03796 221 LQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDP-VLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 89999999999999999998753 45999999999988 67887764 344444444444555444443333 55666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1065)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1065)
.++.+++.+.+...+.++..+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++.++++.+...+.......
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777778888888888899999999999999999999999999999999999988776666554444333332
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001505 501 IAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1065)
Q Consensus 501 ~~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 578 (1065)
...+.... -..+.++++|++.+.++.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.+++.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 22211111 1223456678888889999999999999999999999999999999999999999999999987652211
Q ss_pred CC------CCCC-CCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC
Q 001505 579 IT------EPTS-KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI 650 (1065)
Q Consensus 579 ~~------~~~~-~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~ 650 (1065)
.. .... ....+.|+++|++|+|+++ ++++|+| |++|++||++||+|++|||||||+++|+|+++|+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPL------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCC------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 11 0111 1224579999999999864 3679999 9999999999999999999999999999999999
Q ss_pred CCcEEEECC-------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccC
Q 001505 651 SGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1065)
Q Consensus 651 ~G~i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe 716 (1065)
+|+| .+|| +++||||+|++|+|||||||.+|++ .++++++++++.|+++++++.+|+|++|.|||
T Consensus 533 ~G~I-~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 533 SGEI-LFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred CcEE-EECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence 9999 9988 4899999999999999999998864 78899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCE
Q 001505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~ 796 (1065)
+|.||||||||||+||||++++|+|+||||||||||++|++++++. ++. +++|+|+||||++.++.||+|++|++|+
T Consensus 612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~-l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN-LRR--RGCTCIIVAHRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHH-HHh--cCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999988765 444 5899999999999999999999999999
Q ss_pred EEEecCHHHHHhhcchHHHHHH
Q 001505 797 IEQSGKYEDLIADQNSELVRQM 818 (1065)
Q Consensus 797 I~e~Gt~~eL~~~~~~~~~~l~ 818 (1065)
|++.|+|+||++ .++.|.+++
T Consensus 689 i~~~G~~~~Ll~-~~~~y~~l~ 709 (710)
T TIGR03796 689 VVQRGTHEELWA-VGGAYARLI 709 (710)
T ss_pred EEEecCHHHHHH-cCCcHHHHh
Confidence 999999999998 788888775
No 14
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-75 Score=713.81 Aligned_cols=541 Identities=20% Similarity=0.279 Sum_probs=417.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHH
Q 001505 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHS-SYHYGLVLASVFLFAKTVESLT--QRQWYF--GANRI 345 (1065)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~-~~~~g~~l~~~l~~~~~~~~l~--~~~~~~--~~~r~ 345 (1065)
+..|+.++++.+.+++......+..+++..+++....++... ...... +++.+++..++..+. .++|+| ...++
T Consensus 660 ~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~-~al~f~~l~~~~~i~~~~q~~~f~~~ge~L 738 (1228)
T KOG0055|consen 660 KPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA-WALIFLGLGIVSGITNFLQHYFFGIAGEKL 738 (1228)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888999999998888888888888887665332110 111111 222222222222222 234444 35666
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001505 346 GIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1065)
Q Consensus 346 ~~~iR~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~ 424 (1065)
.+|+|......+.++-..+-+..+++|.+.+++++|+..+...+.. +..+.....-+++++.+-+ ..||-.++.+++.
T Consensus 739 t~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf-~~~W~lalv~la~ 817 (1228)
T KOG0055|consen 739 TKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF-IYGWRLALVVLAT 817 (1228)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 6666665544444444444444444499999999999988876642 2222222222222222211 2344556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001505 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL-REIERDSLKKYLYTCSAIAF 503 (1065)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~-R~~E~~~l~~~~~~~~~~~~ 503 (1065)
.+++....+...+.+.+...+.+++.++..+...|++.|||+||.++.|++|.+...+. ++-.....++. ....+...
T Consensus 818 ~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~-~i~gl~f~ 896 (1228)
T KOG0055|consen 818 FPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG-LISGLGFG 896 (1228)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 77777888888888999999999999999999999999999999999999887776553 22222222222 22222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCCC
Q 001505 504 LFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN--QKKPI 579 (1065)
Q Consensus 504 ~~~~~p--~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e--~~~~~ 579 (1065)
+..+.. .-...++||.+++..+..++.++|.++..+..-...+.+.....+.+..|+.|..+|.+.++.++ +.+..
T Consensus 897 ~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~ 976 (1228)
T KOG0055|consen 897 FSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDST 976 (1228)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 222222 22345567888888899999999999888887777788888888899999999999999999876 22221
Q ss_pred CCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC
Q 001505 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1065)
Q Consensus 580 ~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~ 658 (1065)
.....+...+.|+++|++|+||.+ ++.++++| |++|++|+.+|+||||||||||.+.+|.++|+|.+|.| .+|
T Consensus 977 ~~~~~~~~~G~I~~~~V~F~YPsR-----P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V-~ID 1050 (1228)
T KOG0055|consen 977 SGGKLPNVKGDIEFRNVSFAYPTR-----PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV-KID 1050 (1228)
T ss_pred CCCccccceeEEEEeeeEeeCCCC-----CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE-EEC
Confidence 111123346789999999999998 77899999 99999999999999999999999999999999999999 999
Q ss_pred C-------------eEEEEecCCCCCCCcHHHHHhcCc-ccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 659 G-------------KKAYVPQSSWIQTGTIRENILFGK-DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 659 g-------------~iayv~Q~pwif~gTIreNIlfG~-~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
| ++|.|+|+|.|||+||||||++|. ..++++..++++.+..+++|..||+|+||.|||||.+||||
T Consensus 1051 g~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGG 1130 (1228)
T KOG0055|consen 1051 GVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGG 1130 (1228)
T ss_pred CcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCch
Confidence 8 489999999999999999999993 46888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHH
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
||||||||||+.+||+||||||+|||||++.++ +.|+++..+..+||+|+|+||++++++||.|.|++||+|+|+|||+
T Consensus 1131 QKQRIAIARAilRnPkILLLDEATSALDseSEr-vVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1131 QKQRIAIARAILRNPKILLLDEATSALDSESER-VVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHD 1209 (1228)
T ss_pred HHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH-HHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHH
Confidence 999999999999999999999999999999975 6799999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHhh
Q 001505 805 DLIADQNSELVRQMKAHR 822 (1065)
Q Consensus 805 eL~~~~~~~~~~l~~~~~ 822 (1065)
||++ .++.|.+|++.|.
T Consensus 1210 ~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1210 ELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred HHHh-CCCchHHHhhhcc
Confidence 9999 9999999987664
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.3e-72 Score=739.30 Aligned_cols=758 Identities=14% Similarity=0.131 Sum_probs=521.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1065)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1065)
++...+.+++.++++.++.++..++..+.|++++.++|.+...+. .....+.++ +..++..++.....+...++
T Consensus 51 ~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 51 FKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLV----LIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 333445567788889999999999999999999999997643211 111111111 11222222222223334455
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001505 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1065)
Q Consensus 346 ~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~ 421 (1065)
+.++...++..+|+|.++++.. ..++|++.+.++.|++.+.+.+. .+..+...++.++.++++++. +.|..+++.
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~ 203 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCI 203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 6666666666777787777642 33789999999999999988764 345555555555555544442 333455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1065)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1065)
++++++++.+...+.++.++..++.++..++..+.+.|.++|||+||.|+.|+.+.+++++..+.-.+...+.....+..
T Consensus 204 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~ 283 (1466)
T PTZ00265 204 TCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLH 283 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677778888888888888888999999999999999999999999988888764433333222222222221
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001505 502 AFLFWA--SPTLVSVITFGVCILLKT--------PLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIK 571 (1065)
Q Consensus 502 ~~~~~~--~p~~v~~~~f~~~~~~~~--------~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~ 571 (1065)
..+... .-..+.++++|.+.+..+ .+++|.+++++........++..+...+..+.++.+|.+||.+.++
T Consensus 284 ~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~ 363 (1466)
T PTZ00265 284 IGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111111 122344567788777653 5888988887665544455566666678999999999999999998
Q ss_pred ccCC-CCCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC
Q 001505 572 EDNQ-KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR 649 (1065)
Q Consensus 572 ~~e~-~~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~ 649 (1065)
.++. ++.......+ ....|+++|++|+|+.+ ++.++|+| ||+|++||++||+||+|||||||+++|+|+++|
T Consensus 364 ~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~-----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 437 (1466)
T PTZ00265 364 RKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTR-----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437 (1466)
T ss_pred CCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCC-----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC
Confidence 7652 1111111111 12369999999999864 33579999 999999999999999999999999999999999
Q ss_pred CCCcEEEEC-C-------------eEEEEecCCCCCCCcHHHHHhcCcc-------------------------------
Q 001505 650 ISGAAIKVH-G-------------KKAYVPQSSWIQTGTIRENILFGKD------------------------------- 684 (1065)
Q Consensus 650 ~~G~i~~v~-g-------------~iayv~Q~pwif~gTIreNIlfG~~------------------------------- 684 (1065)
++|+| .++ | +|+||+|+|.+|++||+|||.+|.+
T Consensus 438 ~~G~I-~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1466)
T PTZ00265 438 TEGDI-IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRA 516 (1466)
T ss_pred CCCeE-EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccc
Confidence 99999 884 4 3899999999999999999999741
Q ss_pred ---------------------------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001505 685 ---------------------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1065)
Q Consensus 685 ---------------------------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~ 737 (1065)
.++++..++++.++++++++.||+|++|.+|++|.+|||||||||+||||+++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~ 596 (1466)
T PTZ00265 517 KCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIR 596 (1466)
T ss_pred cccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhc
Confidence 23456778888899999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhcCCEEEEEeCC--------------------
Q 001505 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDG-------------------- 795 (1065)
Q Consensus 738 ~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~~G-------------------- 795 (1065)
+|+|+||||||||||+++++.+ ++.++.+. +++|+|+||||++++..||+|++|++|
T Consensus 597 ~P~ILlLDEpTSaLD~~se~~i-~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~ 675 (1466)
T PTZ00265 597 NPKILILDEATSSLDNKSEYLV-QKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNK 675 (1466)
T ss_pred CCCEEEEeCcccccCHHHHHHH-HHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccc
Confidence 9999999999999999998766 56777765 489999999999999999999999986
Q ss_pred ---------------------------EEEEecCHHHHHhhcchHHHHHHHHhhhcccCC--CCCCccc---ccc-cCcc
Q 001505 796 ---------------------------KIEQSGKYEDLIADQNSELVRQMKAHRKSLDQV--NPPQEDK---CLS-RVPC 842 (1065)
Q Consensus 796 ---------------------------~I~e~Gt~~eL~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~---~~~-~~~~ 842 (1065)
+|+|+|+|+||++..++.|..+++.+....... +..+... ... ..+.
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1466)
T PTZ00265 676 ENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSE 755 (1466)
T ss_pred ccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccc
Confidence 599999999999745899999997764321110 0000000 000 0000
Q ss_pred -----cc-cch--hhhhc-c--C--CCCCCCCCCCCcc------hhh--hcCcc--cHHHHHHHHHHhchhhHHHH--HH
Q 001505 843 -----QM-SQI--TEERF-A--R--PISCGEFSGRSQD------EDT--ELGRV--KWTVYSAFITLVYKGALVPV--IL 897 (1065)
Q Consensus 843 -----~~-~~~--~~~~~-~--~--~~~~~~~~~l~~~------E~r--~~G~V--~~~vy~~Y~~~~~g~~~~~~--~~ 897 (1065)
++ ... .+... . . ...+....+..++ +++ ..... .+..+++|+........+.+ .+
T Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1466)
T PTZ00265 756 RGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSIL 835 (1466)
T ss_pred cccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 00000 0 0 0000000000000 000 00011 12223334332211111111 11
Q ss_pred HHHHHHHHHHhchhhhhe-eeccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Q 001505 898 LCQVLFQALQMGSNYWIA-WATDEKRKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPIS 976 (1065)
Q Consensus 898 ~~~~~~~~~~~~~~~Wl~-~~~~~~~~~~~~~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPms 976 (1065)
+...+..+.......++. .+...+.......|..++++++++..++.+++.+++...+.+...+++..+++++++.|++
T Consensus 836 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~ 915 (1466)
T PTZ00265 836 VAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEIS 915 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 122222222222222322 1111111112345777788888888999999999999999999999999999999999999
Q ss_pred cccc--cChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 977 FFDS--TPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILG 1038 (1065)
Q Consensus 977 FFD~--tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~ 1038 (1065)
|||. +++|++++|+++|++.+...+...+..++..++.+++.++++.+..|.+.++++|+.+
T Consensus 916 ~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~ 979 (1466)
T PTZ00265 916 FFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYF 979 (1466)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 8999999999999999999999999999999999999999889999988776666543
No 16
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.1e-74 Score=718.01 Aligned_cols=531 Identities=22% Similarity=0.309 Sum_probs=431.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 264 SLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1065)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1065)
+.++..++.+++.+....++.++..++.++.|++++.++|.+....+. . . .+.+++++++..++..+......+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~-~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF-E-T-LWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH-h-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888888899999999999999999999987543321 1 1 222333333334444444444445567
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC--CCChHHHHHHHHhhHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001505 344 RIGIRVRSALTVLIYKRSMAIKFA--GPSSGIIINMINVDVERIGDFFLY-I-HRIWLLPVQVFLALVILYKNLGAAPAF 419 (1065)
Q Consensus 344 r~~~~iR~~L~~~iy~K~L~ls~~--~~~~G~ivnlms~D~~~i~~~~~~-~-~~~w~~pl~i~~al~lL~~~lg~~~~l 419 (1065)
+++.++...+...+|+|.++++.. .+++|++++++ +|++.+.+++.. + ..+...+.- ++.+++++..-+ +.++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~l~l 289 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFA-LLFLLVIAIIGG-PLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHh-HHHH
Confidence 888899999999999999998764 34899999999 799999987642 2 223333333 333333333223 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1065)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1065)
+.++.+++.+++...+.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+......
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777778888889999999999999999999999999999999999999999988877665555444443333
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-C
Q 001505 500 AIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-K 576 (1065)
Q Consensus 500 ~~~~~~~~~p--~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~-~ 576 (1065)
....+..... ..+.++++|++.+.++.+|.|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.+++ +
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3222222211 223345678888888999999999999999999999999999999999999999999999987652 2
Q ss_pred CCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEE
Q 001505 577 KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1065)
Q Consensus 577 ~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~ 655 (1065)
+.....+.....+.|+++|++|+|+++ ++++|+| |++|+|||++||||++|||||||+++|+|+++|++|+|
T Consensus 450 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I- 522 (694)
T TIGR03375 450 EGTRFLHRPRLQGEIEFRNVSFAYPGQ------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV- 522 (694)
T ss_pred CCCCCCCCCCccceEEEEEEEEEeCCC------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-
Confidence 111111111234579999999999754 3679999 99999999999999999999999999999999999999
Q ss_pred EECC-------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 656 ~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++| +++||||+|++|+|||||||.+|++ .++++++++++.|+++++++.+|+|++|.|||+|.||
T Consensus 523 ~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L 602 (694)
T TIGR03375 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602 (694)
T ss_pred EECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC
Confidence 9998 5899999999999999999999987 7899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEec
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~G 801 (1065)
||||||||+||||++++|+|+||||||||||+++++++. +.+.+..+++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 603 SgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK-DRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence 999999999999999999999999999999999998874 5688888899999999999999999999999999999999
Q ss_pred CHHHHHh
Q 001505 802 KYEDLIA 808 (1065)
Q Consensus 802 t~~eL~~ 808 (1065)
+|+||++
T Consensus 682 ~~~eLl~ 688 (694)
T TIGR03375 682 PKDQVLE 688 (694)
T ss_pred CHHHHHH
Confidence 9999987
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.3e-73 Score=708.38 Aligned_cols=536 Identities=22% Similarity=0.270 Sum_probs=424.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1065)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1065)
++..++.+++.++...++.++..++..+.|++++.++|.+..... ... .+.+++++++..++..+......+...++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (708)
T TIGR01193 147 FIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGT-LGIISIGLIIAYIIQQILSYIQIFLLNVL 223 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888888899999999999999999997754332 111 22223333333444444444444556778
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001505 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1065)
Q Consensus 346 ~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL~~~lg~~~~l~~ 421 (1065)
+.++...+...+|+|.++++.. .+++|+++++++ |++.+.+++.. ........+.+++.+++++. +.++.+++.
T Consensus 224 ~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~ 301 (708)
T TIGR01193 224 GQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVR-QNMLLFLLS 301 (708)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 8888889999999999998863 459999999998 99999887642 22222222223333333332 222445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 001505 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT---- 497 (1065)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~---- 497 (1065)
++.+++...+...+.++.++..++.++..+++.+...|.++|+++||.+++|+.+.+++++..++..+...+....
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666777888888999999999999999999999999999999999998888776544333322222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-C
Q 001505 498 CSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-K 576 (1065)
Q Consensus 498 ~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~-~ 576 (1065)
.....++... ..+.++++|++.+..+.+|.|.++++..++..+..|+..+...+..+.+++++.+|+.++++.+++ +
T Consensus 382 ~~~~~~~~~~--~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 382 QAIKAVTKLI--LNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 1222222212 223456688888889999999999999999999999999999999999999999999999987652 2
Q ss_pred CCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEE
Q 001505 577 KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1065)
Q Consensus 577 ~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~ 655 (1065)
+.....+..+..+.|+++|++|+|+++ +++|+| |++|++||++||+|+||||||||+++|+|+++|++|+|
T Consensus 460 ~~~~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I- 531 (708)
T TIGR01193 460 NKKKRTELNNLNGDIVINDVSYSYGYG-------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI- 531 (708)
T ss_pred ccccccCCCCCCCcEEEEEEEEEcCCC-------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE-
Confidence 111111112234579999999999743 578999 99999999999999999999999999999999999999
Q ss_pred EECC-------------eEEEEecCCCCCCCcHHHHHhcCc--ccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 656 ~v~g-------------~iayv~Q~pwif~gTIreNIlfG~--~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++| +++||||+|++|+|||||||.+|. +.+++++.++++.|+++++++.+|+|++|.|||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9998 489999999999999999999983 4678899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEe
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~ 800 (1065)
|||||||||+||||++++|+|+||||||||||+++++++.+ .++. ++++|+|+||||++.+..||+|++|++|+|++.
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~-~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN-NLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999988755 5555 478999999999999999999999999999999
Q ss_pred cCHHHHHhhcchHHHHHHH
Q 001505 801 GKYEDLIADQNSELVRQMK 819 (1065)
Q Consensus 801 Gt~~eL~~~~~~~~~~l~~ 819 (1065)
|+|+||++ .++.|.++++
T Consensus 690 G~~~~L~~-~~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLD-RNGFYASLIH 707 (708)
T ss_pred CCHHHHHh-cCCcHHHHhh
Confidence 99999998 7888888764
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.3e-72 Score=691.14 Aligned_cols=542 Identities=18% Similarity=0.221 Sum_probs=425.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1065)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1065)
++.+++.+++.++...+..++..++..+.|++++.++|.+.+.... .. ...++.++++..++..+......+...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SV--LKWMPLVVIGLMILRGITSFISSYCISWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777888888888999999999977643321 11 11122222223333334333333445677
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001505 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1065)
Q Consensus 346 ~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~ 421 (1065)
+.++...+...+|+|.++++.. .++.|++++++++|++++.+.+. .+..++..++.+++.+++++.. +++.+++.
T Consensus 93 ~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~l~~ 171 (582)
T PRK11176 93 SGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY-SWQLSLIL 171 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 7888888899999999988753 34899999999999999988653 4455566666666665555433 32445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1065)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1065)
++++++..++.....++.++..++.++..++..+...|.++|+++||.++.|+.+.+++++.-+.-.+...+........
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T PRK11176 172 IVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSIS 251 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666777888888888889999999999999999999999999998888777764333222222222222211
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 001505 502 AFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1065)
Q Consensus 502 ~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 579 (1065)
....... -..+.++.++.+.+..+.+++|.+.+++.++..+..|+..+...+..+.+++.+++|+.++++.+++.+..
T Consensus 252 ~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 331 (582)
T PRK11176 252 DPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Confidence 1111111 12333455677777788999999999999999999999999999999999999999999999876521111
Q ss_pred CCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC
Q 001505 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1065)
Q Consensus 580 ~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~ 658 (1065)
.. ..++..+.|+++|++|+|+++ +.++|+| |++|++||++||+|++|||||||+++|+|+++|.+|+| .++
T Consensus 332 ~~-~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~ 403 (582)
T PRK11176 332 KR-VIERAKGDIEFRNVTFTYPGK------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI-LLD 403 (582)
T ss_pred Cc-CCCCCCCeEEEEEEEEecCCC------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE-EEC
Confidence 11 111223469999999999764 3679999 99999999999999999999999999999999999999 998
Q ss_pred C-------------eEEEEecCCCCCCCcHHHHHhcCcc--cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 659 G-------------KKAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 659 g-------------~iayv~Q~pwif~gTIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
| .++||||+|++|++||||||++|++ +++++++++++.|+++++++.||+|++|.+||+|.+|||
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 8 4899999999999999999999863 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||||||+||||+|++|+|+||||||||||+++++.++ +.+..+.+++|+|+||||++.++.||+|++|++|+|+|.|+|
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~-~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~ 562 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTH 562 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999998875 557777778999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHh
Q 001505 804 EDLIADQNSELVRQMKAH 821 (1065)
Q Consensus 804 ~eL~~~~~~~~~~l~~~~ 821 (1065)
+||++ .++.|++++..+
T Consensus 563 ~~l~~-~~~~y~~l~~~~ 579 (582)
T PRK11176 563 AELLA-QNGVYAQLHKMQ 579 (582)
T ss_pred HHHHh-CCChHHHHHHHH
Confidence 99998 788999987644
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.8e-72 Score=687.82 Aligned_cols=541 Identities=21% Similarity=0.246 Sum_probs=416.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1065)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1065)
+..+.+.+++.++...++.++..++..+.|+++..++|.+....+. .......+++++++..++..+......+...+.
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNL-PLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRA 92 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777888888888999999999999999999976543221 111112222223333334444444444556677
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001505 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1065)
Q Consensus 346 ~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL~~~lg~~~~l~~ 421 (1065)
+.++...+...+|+|.++.+.. .+++|+++|++++|++++.+++.. +..+....+.+++++.+++. ++|+.+++.
T Consensus 93 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~li~ 171 (592)
T PRK10790 93 AVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFS-LDWRMALVA 171 (592)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8888888889999999988753 458999999999999999987643 33333333333333333332 332334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001505 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA- 500 (1065)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~- 500 (1065)
++++++.+++.....++.++..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+.......
T Consensus 172 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (592)
T PRK10790 172 IMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFL 251 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443444444555566667777777788888889999999999999999999999888877554433322111111111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001505 501 ---IAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK 577 (1065)
Q Consensus 501 ---~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~ 577 (1065)
...+......++.++ .+.+ ...+.++.|.+++++.++..+..|+..++.....+.+++.+.+|+.++++.++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~-~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 329 (592)
T PRK10790 252 LRPLLSLFSALILCGLLM-LFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQY 329 (592)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 111111111111112 2223 35778999999999999999999999999999999999999999999998665221
Q ss_pred CCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEE
Q 001505 578 PITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK 656 (1065)
Q Consensus 578 ~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~ 656 (1065)
.... .....+.|+++|++|+|+++ +++|+| |+++++||++||+|++|||||||+++|+|+++|.+|+| .
T Consensus 330 ~~~~--~~~~~~~i~~~~v~f~y~~~-------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I-~ 399 (592)
T PRK10790 330 GNDD--RPLQSGRIDIDNVSFAYRDD-------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI-R 399 (592)
T ss_pred CCCc--cCCCCCeEEEEEEEEEeCCC-------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-E
Confidence 1111 11123569999999999753 468999 99999999999999999999999999999999999999 9
Q ss_pred ECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 657 VHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 657 v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
++| +|+||||+|++|+|||||||.+|++.++++.++++++++++++++.+|+|+||.|||+|.+|||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 998 3899999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||||||+||||+|+||+|+||||||||||++++++| .+.++.+.++||+|+||||++.++.||+|++|++|+|++.|+|
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i-~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-QQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999877 5567777789999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHhh
Q 001505 804 EDLIADQNSELVRQMKAHR 822 (1065)
Q Consensus 804 ~eL~~~~~~~~~~l~~~~~ 822 (1065)
+||++ .++.|.++.+.+.
T Consensus 559 ~~L~~-~~~~y~~l~~~~~ 576 (592)
T PRK10790 559 QQLLA-AQGRYWQMYQLQL 576 (592)
T ss_pred HHHHh-CCCHHHHHHHHHh
Confidence 99998 7899999887553
No 20
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.1e-72 Score=684.02 Aligned_cols=541 Identities=19% Similarity=0.229 Sum_probs=433.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1065)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1065)
++.+++.+++.+++..++.++..++....|++++.+++........ .. .+.+++++++..++..+......+...+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDR-SV--LWWVPLVVIGLAVLRGICSFVSTYLLSWV 81 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999999999999999999999865443221 11 12222222233333334333333445677
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001505 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1065)
Q Consensus 346 ~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~ 421 (1065)
+.++...+...+|+|.++.+.. ..+.|+++++++.|++++.+++. .+..++...+.+++++++++. ++++.+++.
T Consensus 82 ~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~l~~i~ 160 (571)
T TIGR02203 82 SNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLY-YSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 7788888888899999987753 23899999999999999998764 455555555555555555554 333555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 422 LFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1065)
Q Consensus 422 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1065)
++++++.+.+...+.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+........
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777888888899999999999999999999999999999999999988887776555444333332222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 001505 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPI 579 (1065)
Q Consensus 502 ~~~~~~~p--~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~ 579 (1065)
..+..... ..+.++.++.+.+..+.+|+|.+++++.++..+..|+..+......+.+++++.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 22211111 1233455777778889999999999999999999999999999999999999999999999876532211
Q ss_pred CCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC
Q 001505 580 TEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH 658 (1065)
Q Consensus 580 ~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~ 658 (1065)
.. +..+..+.|+++|++|+|+++ ++++++| |+++++||+++|+|++|||||||+++|+|+++|.+|+| .++
T Consensus 321 ~~-~~~~~~~~i~~~~v~f~y~~~------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I-~i~ 392 (571)
T TIGR02203 321 TR-AIERARGDVEFRNVTFRYPGR------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI-LLD 392 (571)
T ss_pred CC-CCCCCCCeEEEEEEEEEcCCC------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EEC
Confidence 11 111224579999999999864 3579999 99999999999999999999999999999999999999 999
Q ss_pred C-------------eEEEEecCCCCCCCcHHHHHhcCc--ccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 659 G-------------KKAYVPQSSWIQTGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 659 g-------------~iayv~Q~pwif~gTIreNIlfG~--~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
| +++||||+|++|+|||||||.+|+ +.++++++++++.|+++++++.+|+|+||+|||+|.+|||
T Consensus 393 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSg 472 (571)
T TIGR02203 393 GHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472 (571)
T ss_pred CEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCH
Confidence 8 489999999999999999999996 4889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||||||+||||+|++|+|+|||||||+||++++++|. +.+....++||+|+|||+++.++.||+|++|++|++++.|+|
T Consensus 473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~-~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~ 551 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQ-AALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTH 551 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCH
Confidence 9999999999999999999999999999999999885 557777789999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHH
Q 001505 804 EDLIADQNSELVRQMKA 820 (1065)
Q Consensus 804 ~eL~~~~~~~~~~l~~~ 820 (1065)
+|+++ .++.|.++.++
T Consensus 552 ~~l~~-~~~~~~~~~~~ 567 (571)
T TIGR02203 552 NELLA-RNGLYAQLHNM 567 (571)
T ss_pred HHHHH-cCCHHHHHHHH
Confidence 99998 67788887654
No 21
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.7e-71 Score=678.48 Aligned_cols=535 Identities=26% Similarity=0.369 Sum_probs=415.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1065)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (1065)
.+.+ ++ .+....++.++..++....|.++..+++.+..... ........+++..+ +..+......+...+.+.
T Consensus 9 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~ 81 (567)
T COG1132 9 KYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLG-ELLELLLLLLLLAL----LGGVLRALQSYLGSRLGQ 81 (567)
T ss_pred HHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3344 67 78888888889999999999999999998762111 01111112222222 222333333334455557
Q ss_pred HHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001505 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWL-LPVQVFLALVILYKNLGAAPAFAALF 423 (1065)
Q Consensus 348 ~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~~~~~w~-~pl~i~~al~lL~~~lg~~~~l~~l~ 423 (1065)
++...+...+|+|.++++.. ..++|++++++++|++.+.+.+........ .++.++..+++++ .+.|..++..++
T Consensus 82 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~ 160 (567)
T COG1132 82 KIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLL 160 (567)
T ss_pred HHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 78888888999999998743 237899999999999999988765422222 3333333333333 333234444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001505 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIA- 502 (1065)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~- 502 (1065)
..+++......+.++.++...+..+..++..+.+.|.++|++++|.|+.|+...++.++..+...+...+.........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T COG1132 161 ILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAP 240 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666888888888899999999999999999999999997666555443322222111111111111
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCC
Q 001505 503 FLF-WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPIT 580 (1065)
Q Consensus 503 ~~~-~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~-~~~~~ 580 (1065)
... ...-....++.++.+.+..+.++.|.+.+++.+...+..|+..+...+..+.++..+.+|+.++++.++. .+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 320 (567)
T COG1132 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD 320 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 111 1112233445566677778889999999999999999999999999999999999999999999998652 22111
Q ss_pred CCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC
Q 001505 581 EPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1065)
Q Consensus 581 ~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g 659 (1065)
. .....+.|+++|++|+|+++ +++++| |+++++||++|||||+|||||||+++|+|+++|++|+| .+||
T Consensus 321 ~--~~~~~~~I~f~~vsf~y~~~-------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I-~idg 390 (567)
T COG1132 321 P--LKDTIGSIEFENVSFSYPGK-------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI-LIDG 390 (567)
T ss_pred C--CCCCCCeEEEEEEEEEcCCC-------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECC
Confidence 1 12234569999999999853 689999 99999999999999999999999999999999999999 8888
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+||||||+|+||++||+|||.+|+| .++|+.+++++.++++++++.+|+|+||.|||+|.+|||||
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQ 470 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHH
Confidence 4899999999999999999999998 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
||||+||||+++||+|++|||||||||++|++.| ++.++.+.++||+|+|+||++++.+||+|+|||+|+|+|.|+|+|
T Consensus 471 rQrlaiARall~~~~ILILDEaTSalD~~tE~~I-~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 471 RQRLAIARALLRNPPILILDEATSALDTETEALI-QDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCHHhHHHH-HHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999877 556777778999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHhh
Q 001505 806 LIADQNSELVRQMKAHR 822 (1065)
Q Consensus 806 L~~~~~~~~~~l~~~~~ 822 (1065)
|++ .++.|.+++..+.
T Consensus 550 Ll~-~~g~y~~l~~~~~ 565 (567)
T COG1132 550 LLA-KGGLYARLYQAQG 565 (567)
T ss_pred HHH-cCCHHHHHHHHhh
Confidence 999 8999999987654
No 22
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.2e-71 Score=671.55 Aligned_cols=538 Identities=21% Similarity=0.251 Sum_probs=409.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDH-SSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1065)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~-~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1065)
.+.+.+++.++++.++.++..++....|.+++.++|... .+... .... ....++++++..++..+......+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (574)
T PRK11160 9 KLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN-YMLPAAGVRGAAIGRTAGRYGERLVSHDA 87 (574)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888889999999999999999999999642 22110 0111 11112222223334444444444556678
Q ss_pred HHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001505 346 GIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAA 421 (1065)
Q Consensus 346 ~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL~~~lg~~~~l~~ 421 (1065)
+.++...++..+|+|.++++.. ..++|++++++++|++++++++.. +..+....+.+++++++++. +.|..++..
T Consensus 88 ~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~ 166 (574)
T PRK11160 88 TFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSF-FDLTLALTL 166 (574)
T ss_pred HHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8888899999999999998763 348999999999999999987743 44444444444444443332 221333332
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 422 LFSTIFV-MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1065)
Q Consensus 422 l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1065)
++++++. +.+...+.++.++..++.+++.++..+.+.|.++|+++||.|+.|+.+.+++++..++-.+...+.....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (574)
T PRK11160 167 GGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGL 246 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 223345566667778888888999999999999999999999999988888776544333322222222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-C
Q 001505 501 IAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRI-LQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-K 576 (1065)
Q Consensus 501 ~~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~-l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~-~ 576 (1065)
...+.... ...+.++.++.+. .++.++.|..++++.+... ...|+..++..+..+.+++++.+|+.++++.+++ +
T Consensus 247 ~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~ 325 (574)
T PRK11160 247 SQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVT 325 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 21111111 1122334455555 4678999998887766533 4568888999999999999999999999987652 2
Q ss_pred CCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEE
Q 001505 577 KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1065)
Q Consensus 577 ~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~ 655 (1065)
+.... ...+..+.|+++|++|+|+++ ++++|+| |+++++||++||+||+|||||||+++|+|+++|++|+|
T Consensus 326 ~~~~~-~~~~~~~~i~~~~v~f~y~~~------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I- 397 (574)
T PRK11160 326 FPTTS-TAAADQVSLTLNNVSFTYPDQ------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI- 397 (574)
T ss_pred CCccc-CCCCCCCeEEEEEEEEECCCC------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-
Confidence 11111 111224579999999999754 3578999 99999999999999999999999999999999999999
Q ss_pred EECC-------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 656 ~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++| .++||||+|++|++||+|||.+|++ .++++.+++++.++++++++. |+|+||.|||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 9988 3899999999999999999999976 688899999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEec
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~G 801 (1065)
||||||||+||||+++||+|+|||||||+||+++++++ .+.+....+++|+|+||||++.++.||+|++|++|+|++.|
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i-~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI-LELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999877 45677777899999999999999999999999999999999
Q ss_pred CHHHHHhhcchHHHHHHH
Q 001505 802 KYEDLIADQNSELVRQMK 819 (1065)
Q Consensus 802 t~~eL~~~~~~~~~~l~~ 819 (1065)
+|+||++ .++.|.++++
T Consensus 556 ~~~~l~~-~~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLA-QQGRYYQLKQ 572 (574)
T ss_pred CHHHHHh-cCcHHHHHHh
Confidence 9999999 8899998864
No 23
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.7e-70 Score=671.83 Aligned_cols=544 Identities=19% Similarity=0.265 Sum_probs=422.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1065)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1065)
.++.+++.+++.+.+..++.++..++..+.|++++.++|.+....+. ... . .++..+++..++..+......+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS-GLL-N-RYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH-HHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888889999999999999999999974422221 111 1 11111222222333333344455678
Q ss_pred HHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001505 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1065)
Q Consensus 345 ~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~ 420 (1065)
++.++...+...+|+|.++.+.. ..+.|++++++++|++.+.+++. .+..++...+.+++++++++..-. +.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 163 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP-KLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence 88899999999999999988653 34889999999999999988764 344444444444444333332212 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1065)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1065)
.++.+++.+.+...+.++.++..++.++..+++.+...|.++|+++||.+++|+.+.+++++..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445556777888888888999999999999999999999999999998888777555433332222222111
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CC
Q 001505 501 IAFLFW--ASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KK 577 (1065)
Q Consensus 501 ~~~~~~--~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~-~~ 577 (1065)
...... .....+..+.+|++.+..+.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.+++ +.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 111111 112233445567777888899999999999999999999999999999999999999999999986542 11
Q ss_pred CCCC-CCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEE
Q 001505 578 PITE-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1065)
Q Consensus 578 ~~~~-~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~ 655 (1065)
.... ....+..+.|+++|++|+|+++ +++++|+| |++++|||+++|+|++|||||||+++|+|+++|.+|+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~-----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I- 397 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPAR-----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI- 397 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCC-----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-
Confidence 1111 1111223569999999999864 33679999 99999999999999999999999999999999999999
Q ss_pred EECC-------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 656 KVHG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 656 ~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++| .++||||+|++|+|||||||.+|.| .++++.+++++.+++.++++.+|+|++|.+||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~L 477 (576)
T TIGR02204 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477 (576)
T ss_pred EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcC
Confidence 9988 4899999999999999999999876 5778999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEec
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~G 801 (1065)
||||||||+||||+|++|+|+|||||||+||+++++.+ .+.++.+.+++|+|+||||++.++.+|+|++|+||++++.|
T Consensus 478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i-~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV-QQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHH-HHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999998766 45677777899999999999999999999999999999999
Q ss_pred CHHHHHhhcchHHHHHHHH
Q 001505 802 KYEDLIADQNSELVRQMKA 820 (1065)
Q Consensus 802 t~~eL~~~~~~~~~~l~~~ 820 (1065)
+|+++.+ .++.|.++...
T Consensus 557 ~~~~l~~-~~~~~~~l~~~ 574 (576)
T TIGR02204 557 THAELIA-KGGLYARLARL 574 (576)
T ss_pred cHHHHHH-cCChHHHHHhh
Confidence 9999998 88888887654
No 24
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.4e-70 Score=669.77 Aligned_cols=535 Identities=19% Similarity=0.261 Sum_probs=417.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1065)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (1065)
.+++.+++.+.+..++.++..++..+.|++++.++|.+.++.. . .. +++.+++..++..+......+...++..
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK13657 12 QYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--I---FP-LLAAWAGFGLFNIIAGVLVARHADRLAH 85 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--H---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888899999999999999999998765321 1 11 1111111112222222222334567778
Q ss_pred HHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001505 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1065)
Q Consensus 348 ~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~ 423 (1065)
++|..+...+|+|.++++.. ..+.|+++++++.|++.+.+.+. .+.......+..++.+++++. ++++.+++.++
T Consensus 86 ~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~ 164 (588)
T PRK13657 86 RRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF-MNWRLSLVLVV 164 (588)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 88888889999999998753 34999999999999999876543 233333333323333332222 23234444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 001505 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLR----EIERDSLKKYLYTCS 499 (1065)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R----~~E~~~l~~~~~~~~ 499 (1065)
++++...+...+.++.++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+.- +.+.+..+.......
T Consensus 165 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK13657 165 LGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASV 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566677788888888889999999999999999999999999999998777665543 333222222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CC
Q 001505 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQK-KP 578 (1065)
Q Consensus 500 ~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~-~~ 578 (1065)
...+. .....+.+++++.+.+..+.+|.|.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.+++. +.
T Consensus 245 ~~~~~--~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 322 (588)
T PRK13657 245 LNRAA--STITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP 322 (588)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 22111 1122344566788888889999999999999999999999999999999999999999999999875421 11
Q ss_pred CCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEE
Q 001505 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1065)
Q Consensus 579 ~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v 657 (1065)
....+.....+.|+++|++|+|+++ +++|+| |++++|||+++|+|++|||||||+++|+|+++|.+|+| .+
T Consensus 323 ~~~~~~~~~~~~I~~~~vsf~y~~~-------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I-~i 394 (588)
T PRK13657 323 PGAIDLGRVKGAVEFDDVSFSYDNS-------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LI 394 (588)
T ss_pred CCCCCcCCCCCeEEEEEEEEEeCCC-------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EE
Confidence 1111111223469999999999753 468999 99999999999999999999999999999999999999 99
Q ss_pred CC-------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 658 ~g-------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
+| .|+||||+|++|+|||||||++|+| .++++.+++++.|+++++++.+|+|++|.+||+|.+|||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 88 5899999999999999999999975 678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||||||+||||++++|+|+|||||||+||+++++.+. +.+....++||+|+||||++.++.||+|++|+||++++.|+|
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~-~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVK-AALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999998875 456666679999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHh
Q 001505 804 EDLIADQNSELVRQMKAH 821 (1065)
Q Consensus 804 ~eL~~~~~~~~~~l~~~~ 821 (1065)
+||++ .++.|.+++..+
T Consensus 554 ~~l~~-~~~~y~~l~~~~ 570 (588)
T PRK13657 554 DELVA-RGGRFAALLRAQ 570 (588)
T ss_pred HHHHH-CCChHHHHHHHh
Confidence 99998 788999988654
No 25
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.4e-70 Score=663.51 Aligned_cols=501 Identities=17% Similarity=0.196 Sum_probs=381.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 267 QVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1065)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (1065)
+.+.+.+++.++...++.++..++..+.|++++.++|.+..... ... .+.+..++++..++..+......+...+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VLY-LSVAAVAVRAFGIGRAVFRYLERLVGHDAA 81 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888899999999999999999997654221 111 111111111222333333333334456778
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001505 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAAL 422 (1065)
Q Consensus 347 ~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l 422 (1065)
.++...++..+|+|.++++.. ..++|++++++++|++++.+.+.. +..+....+.+++++++++. +.|..+++.+
T Consensus 82 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~l 160 (529)
T TIGR02868 82 LRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIAL-LSVPAALVLA 160 (529)
T ss_pred HHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 888888899999999998764 238999999999999999987653 33444444444444444332 2223444433
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 423 FSTIFVMVSNTPL-ANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAI 501 (1065)
Q Consensus 423 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1065)
+.++++.++...+ .+..++..++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02868 161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG 240 (529)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333233 333455566777888999999999999999999999999999888876555444433333333322
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCC
Q 001505 502 AFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKP 578 (1065)
Q Consensus 502 ~~~~~~~p--~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~-~~~ 578 (1065)
..+..... ..+.++.++.+.+.++.+|.|.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.+++ ++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (529)
T TIGR02868 241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG 320 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 22222211 223344567777788899999999999999999999999999999999999999999999987652 111
Q ss_pred CCC--CCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEE
Q 001505 579 ITE--PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1065)
Q Consensus 579 ~~~--~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~ 655 (1065)
... .+..+..+.|+++|++|+|+++ +++|+| |++|+|||++|||||||||||||+++|+|+++|++|+|
T Consensus 321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~-------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I- 392 (529)
T TIGR02868 321 VVPAAGALGLGKPTLELRDLSFGYPGS-------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV- 392 (529)
T ss_pred CCCCCcccCCCCceEEEEEEEEecCCC-------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-
Confidence 111 0011123569999999999754 469999 99999999999999999999999999999999999999
Q ss_pred EECC------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 656 KVHG------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 656 ~v~g------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
.++| +++||||+|++|+|||||||.+|+| .+++++++++++|+++++++.||+|+||+|||+|.|||
T Consensus 393 ~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 393 TLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred EECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 9998 7999999999999999999999976 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCc
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l 780 (1065)
|||||||+||||+++||+|+||||||||||++|++.|.+ .+....++||+|+||||+
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~-~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLE-DLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999988754 567777899999999995
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5e-70 Score=679.77 Aligned_cols=542 Identities=19% Similarity=0.223 Sum_probs=429.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1065)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1065)
.++..++.+++.+....+..++..++..+.|++++.++|.+....+. . . ...+++++++..++..+......+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~-~-~-l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL-S-T-LSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh-h-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788888888888899999999999999999987543221 1 1 2223333334444444544444555677
Q ss_pred HHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001505 345 IGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1065)
Q Consensus 345 ~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~ 420 (1065)
++.++...+...+|+|.++++.. .+++|++++++ +|++.+.+++. .+.......+.+++.+++++..-+ +.+++
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~li 283 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSP-TLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 88889999999999999998754 35999999999 59999998763 333333333333333333333222 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1065)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1065)
.++++++...+...+.++.++..++.+++.+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+.......
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666677777788888888899999999999999999999999999998888876544433333332222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001505 501 IAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKP 578 (1065)
Q Consensus 501 ~~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~ 578 (1065)
........ -..+.++.+|++.+..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.+++.+.
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 22111111 1223345678888888999999999999999999999999999999999999999999999987652221
Q ss_pred CCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEE
Q 001505 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1065)
Q Consensus 579 ~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v 657 (1065)
....+.+..++.|+++|++|+|+++ ++++|+| |++|++||++||+|++|||||||+++|+|+++|.+|+| .+
T Consensus 444 ~~~~~~~~~~~~i~~~~vsf~y~~~------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I-~i 516 (694)
T TIGR01846 444 AGLAALPELRGAITFENIRFRYAPD------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV-LV 516 (694)
T ss_pred CCCCCCCCCCCeEEEEEEEEEcCCC------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EE
Confidence 1111112224579999999999754 3568999 99999999999999999999999999999999999999 99
Q ss_pred CC-------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 658 ~g-------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
+| .++||||+|++|++||||||.++++ .++++..++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSg 596 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG 596 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCH
Confidence 98 3899999999999999999999875 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||||||+||||++++|+|+||||||||||+++++++. +.++...+++|+|+||||++.++.||+|++|++|+|++.|+|
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~ 675 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIM-RNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHH-HHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999999998875 467777789999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHH
Q 001505 804 EDLIADQNSELVRQMKA 820 (1065)
Q Consensus 804 ~eL~~~~~~~~~~l~~~ 820 (1065)
+||++ .++.|.+++..
T Consensus 676 ~~l~~-~~~~y~~l~~~ 691 (694)
T TIGR01846 676 EELLA-LQGLYARLWQQ 691 (694)
T ss_pred HHHHH-cCChHHHHHHh
Confidence 99998 78899998764
No 27
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-69 Score=624.15 Aligned_cols=524 Identities=22% Similarity=0.311 Sum_probs=420.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (1065)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~~iy 358 (1065)
+..++..+..++...+-+++...++.+-..+.. .. .+.++++++++.+++++..-.-....++.+.++|..++..++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~--~~-l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQLF--QS-LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777788887777765443311 11 233444455555566655444445577889999999999999
Q ss_pred HHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001505 359 KRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRI---WLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (1065)
Q Consensus 359 ~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~---w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~ 431 (1065)
+|..++++. ..++|++.+++...+|.++.++. ++++. ...|+-++++++.+.+ .++++-++.++++.++
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w----~aalIllit~PlIPlf 156 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNW----AAALILLITAPLIPLF 156 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHH
Confidence 999998753 23889999999999999988764 34433 3445555555544443 3444445555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLK----KLLRLREIERDSLKKYLYTCSAIAFLFWA 507 (1065)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~----~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 507 (1065)
...+++..++..++.++....-....-+.|+|+.++|.|+..+...+ .-++.|+.-|+.+|-.....++.-++...
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l 236 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL 236 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777788888888888888899999999999999997655444 44678999999888776665555555444
Q ss_pred HHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCCC-CCC
Q 001505 508 SPTLVSVITFGVCILLK-TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKPITE-PTS 584 (1065)
Q Consensus 508 ~p~~v~~~~f~~~~~~~-~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~-~~~~~~-~~~ 584 (1065)
+..++ .+ +...-+.+ |+++....+.++.+-.-+..|++.+...+..-.++..+.+++..|++.|+. .+.... ...
T Consensus 237 siAlv-Av-~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~ 314 (559)
T COG4988 237 SIALV-AV-YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314 (559)
T ss_pred HHHHH-HH-HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc
Confidence 33222 23 33444456 699999999999999999999999999999999999999999999998873 222211 111
Q ss_pred CCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----
Q 001505 585 KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1065)
Q Consensus 585 ~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---- 659 (1065)
......++.+|++|.|++. ++.++| |+++++|+++||||+||||||||+++|+|+++|++|+| .+||
T Consensus 315 ~~~~~ei~~~~l~~~y~~g-------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I-~vng~~l~ 386 (559)
T COG4988 315 NEPPIEISLENLSFRYPDG-------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI-RVNGIDLR 386 (559)
T ss_pred cCCCceeeecceEEecCCC-------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE-EECCcccc
Confidence 2223345556999999875 489999 99999999999999999999999999999999999999 9997
Q ss_pred ---------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 ---------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
+++||||+|+||+|||||||++|++ .+++...++++..+|.+.++. |+|.||+|||+|.+|||||+||+
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHH
Confidence 4999999999999999999999998 578899999999999999999 99999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhh
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~ 809 (1065)
+||||+++++++||||||||+||++||+.| .+.+..+.++||||+||||++.+.++|+|+|||+|+++|+|+|+||.+
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i-~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~- 543 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQII-LQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE- 543 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHH-HHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-
Confidence 999999999999999999999999998755 677888999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhh
Q 001505 810 QNSELVRQMKAHR 822 (1065)
Q Consensus 810 ~~~~~~~l~~~~~ 822 (1065)
+++.|++++..++
T Consensus 544 ~~~~y~~l~~~q~ 556 (559)
T COG4988 544 KQGLYANLLKQQE 556 (559)
T ss_pred cCcHHHHHHHHHh
Confidence 8899999987664
No 28
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-69 Score=660.60 Aligned_cols=526 Identities=21% Similarity=0.264 Sum_probs=408.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001505 285 GVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAI 364 (1065)
Q Consensus 285 l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~~iy~K~L~l 364 (1065)
++..++..+.|++++.++|.+.+.... ... .+.+++.+++..++..+......+...+.+.++...++..+|+|.+++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMT-TGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445566677899999999987543211 111 222233333333334444333334455678888888889999999998
Q ss_pred ccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 365 KFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE 440 (1065)
Q Consensus 365 s~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~~~~~~~~~~ 440 (1065)
+.. .+++|++++++++|++.+..... .+..++..++..++++++++..++|..+++.++++++.+.+...+.++.+
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 753 34899999999999999986653 34555555444444444443334534555555555555666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 001505 441 RFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA--SPTLVSVITFG 518 (1065)
Q Consensus 441 ~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~--~p~~v~~~~f~ 518 (1065)
+..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+.....+........ .-..+.++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888899999999999999999999887777654332222222212211111111111 11223345567
Q ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEE
Q 001505 519 VCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEY 598 (1065)
Q Consensus 519 ~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sf 598 (1065)
.+.+.++.+|.|.++++..+...+..|+..++..+..+.+++++.+|+.++++.+++.+.... +.+..++.|+++|++|
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~-~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE-PVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-CCCCCCCcEEEEEEEE
Confidence 788888999999999999999999999999999999999999999999999987652111111 1112235699999999
Q ss_pred EecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------------eEEEE
Q 001505 599 AWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYV 664 (1065)
Q Consensus 599 sw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------------~iayv 664 (1065)
+|+.+ +.++++| |++++||++++|+||+|||||||+++|+|+++|.+|+| .++| .++||
T Consensus 322 ~y~~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i-~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 322 TYPQT------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred ECCCC------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEHhhCCHHHHHhheEEE
Confidence 99854 3578999 99999999999999999999999999999999999999 8987 38999
Q ss_pred ecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 001505 665 PQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1065)
Q Consensus 665 ~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlL 743 (1065)
+|+|++|++||||||.+|.+ .++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||++++|+|+|
T Consensus 395 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 395 SQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred ccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999964 67889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHHHHHHHHhh
Q 001505 744 FDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1065)
Q Consensus 744 LDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~ 822 (1065)
||||||+||+++++++.+ .++.+.+++|+|+||||++.++.||+|++|++|+|++.|+|+|+++ .++.|.+++..++
T Consensus 475 lDEpts~LD~~~~~~i~~-~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~~~ 551 (569)
T PRK10789 475 LDDALSAVDGRTEHQILH-NLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRYQQ 551 (569)
T ss_pred EECccccCCHHHHHHHHH-HHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHHhh
Confidence 999999999999988855 5777778999999999999999999999999999999999999998 7888999887653
No 29
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.8e-69 Score=652.84 Aligned_cols=521 Identities=20% Similarity=0.227 Sum_probs=408.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 271 HAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVR 350 (1065)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR 350 (1065)
+.+++.++...++.++..++..+.|++++.++|.+....+. .. .+.+++.+++..++..++.....+...+++.++.
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~--~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV--PT-LLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLD 78 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch--hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888899999999999999999976532221 11 2223333444445555555555566778889999
Q ss_pred HHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001505 351 SALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFLY--IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1065)
Q Consensus 351 ~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~~--~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~ 428 (1065)
..++..+|+|.++++.. ..++..+.+++|++++.+++.. +..+...++.++..+++++.. + +.+++.++.++++
T Consensus 79 ~~lr~~~~~~ll~~~~~--~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~l~li~l~~~~l~ 154 (544)
T TIGR01842 79 GALNQPIFAASFSATLR--RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLH-P-WIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHHHhcCccc--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHH
Confidence 99999999999998763 3456678889999999887643 333334444333332222222 2 3333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1065)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 508 (1065)
+.+.....++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777778888899999999999999999999999999999988887765554443333222222222111111
Q ss_pred --HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 001505 509 --PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1065)
Q Consensus 509 --p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1065)
...+.++++|.+.+.++.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.+++.+.... ...
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~ 312 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP--LPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCC--CCC
Confidence 1223455678888889999999999999999999999999999999999999999999999987652211111 112
Q ss_pred CCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC------
Q 001505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1065)
Q Consensus 587 ~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------ 659 (1065)
.++.|+++|++|+|+++ ++++++| |+++++||+++|+||+|||||||+++|+|+++|.+|+| .++|
T Consensus 313 ~~~~i~~~~v~~~y~~~------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~i~~~ 385 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-RLDGADLKQW 385 (544)
T ss_pred CCCeEEEEEEEEEcCCC------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEehhhC
Confidence 23569999999999754 3578999 99999999999999999999999999999999999999 9987
Q ss_pred -------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHH
Q 001505 660 -------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1065)
Q Consensus 660 -------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaL 731 (1065)
.++||||+|++|++|+||||.++.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+|
T Consensus 386 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred CHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHH
Confidence 4899999999999999999987654 78889999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 732 ARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
|||++++|+++|||||||+||+++++.+. ++++.+. +++|+|+||||++.+..||+|++|++|++++.|+|+|+++
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALA-NAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHH-HHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999988775 5676654 6899999999999999999999999999999999999975
No 30
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.7e-69 Score=705.68 Aligned_cols=539 Identities=18% Similarity=0.190 Sum_probs=395.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 270 IHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRV 349 (1065)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~i 349 (1065)
++.+++.+++++++.++..++..+.|++++.+++.+.+.... ... +..+++.+++..++..++.....+...+++.++
T Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~-~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~ 897 (1466)
T PTZ00265 820 IFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANL-EAN-SNKYSLYILVIAIAMFISETLKNYYNNVIGEKV 897 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666688888888999999999999999999855432111 111 111222222222222233222333456677777
Q ss_pred HHHHHHHHHHHHhccccC-----CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001505 350 RSALTVLIYKRSMAIKFA-----GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1065)
Q Consensus 350 R~~L~~~iy~K~L~ls~~-----~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~ 423 (1065)
-..++..+|+|.++++.. ..++|++++++++|++.+.+++. .+..+...++.+++++++++ .+.|..+++.+
T Consensus 898 ~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~-~~~~~l~l~~~- 975 (1466)
T PTZ00265 898 EKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSF-YFCPIVAAVLT- 975 (1466)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-
Confidence 777888889998887642 24799999999999999998664 23334444444444433333 22322222222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHH
Q 001505 424 STIFVMVSNTPLANRQERF-HSMI-----------------MEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLRE 485 (1065)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~~-~~~~-----------------~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~ 485 (1065)
+++.++...+.++.+.. .++. .+..++....++|.++||++||.|+.|+.+.+++++.-+
T Consensus 976 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~ 1053 (1466)
T PTZ00265 976 --GTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAID 1053 (1466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHH
Confidence 22222222233322211 1111 122334567899999999999999999999888876544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 486 IERDSLKKYLYTCSAIAFLFWASP--TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSL 563 (1065)
Q Consensus 486 ~E~~~l~~~~~~~~~~~~~~~~~p--~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~ 563 (1065)
...+..++.....+....+..+.. ..+.++++|.+++..+.+|.|.+++++.++.....++..+...+..+.+++++.
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~ 1133 (1466)
T PTZ00265 1054 YSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSF 1133 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222222222111111111 234456788888889999999999988776666667888999999999999999
Q ss_pred HHHHHHhcccCCC--CCCCCCC---CCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChH
Q 001505 564 YRIQEFIKEDNQK--KPITEPT---SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKS 637 (1065)
Q Consensus 564 ~RI~~fL~~~e~~--~~~~~~~---~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKS 637 (1065)
+|+.++++.++.. ......+ ....++.|+|+|++|+|+++ ++.++|+| ||+|++|+++|||||||||||
T Consensus 1134 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-----~~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1134 EKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISR-----PNVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCC-----CCCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence 9999999875411 1111110 11234579999999999865 34589999 999999999999999999999
Q ss_pred HHHHHHhCcccC------------------------------------------------------CCCcEEEECC----
Q 001505 638 SLLSSILGEIPR------------------------------------------------------ISGAAIKVHG---- 659 (1065)
Q Consensus 638 TLl~~LlGe~~~------------------------------------------------------~~G~i~~v~g---- 659 (1065)
||+++|+|+|+| .+|+| .++|
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I-~idG~di~ 1287 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI-LLDGVDIC 1287 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE-EECCEEHH
Confidence 999999999998 69999 9998
Q ss_pred ---------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 ---------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 ---------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.||||||+|+||+|||||||.+|+| .++++.+++++.++++++|+.||+|+||.|||+|.+|||||||||
T Consensus 1288 ~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRI 1367 (1466)
T PTZ00265 1288 DYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRI 1367 (1466)
T ss_pred hCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHH
Confidence 4899999999999999999999976 678889999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhcCCEEEEEeC----CEEE-EecC
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKD----GKIE-QSGK 802 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~~----G~I~-e~Gt 802 (1065)
|||||+++||+|+||||||||||+++++.| ++.+..+. ++||+|+||||++++++||+|+||++ |+++ |+|+
T Consensus 1368 aIARALlr~p~ILLLDEaTSaLD~~sE~~I-~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1368 AIARALLREPKILLLDEATSSLDSNSEKLI-EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecC
Confidence 999999999999999999999999998876 56787763 69999999999999999999999999 9955 8999
Q ss_pred HHHHHhhcchHHHHHHHHh
Q 001505 803 YEDLIADQNSELVRQMKAH 821 (1065)
Q Consensus 803 ~~eL~~~~~~~~~~l~~~~ 821 (1065)
|+||++..++.|.++++.+
T Consensus 1447 h~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1447 HEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHhcCCChHHHHHhhc
Confidence 9999972378999988653
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.2e-68 Score=648.27 Aligned_cols=535 Identities=18% Similarity=0.275 Sum_probs=418.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 268 VIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGI 347 (1065)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~ 347 (1065)
.+++.+++.++...++.++..++..+.|++++.++|.+.+.+. . . .+.+ .+++..++..+......+...++..
T Consensus 12 ~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (585)
T TIGR01192 12 SYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--V-L-PTLA--LWAGFGVFNTIAYVLVAREADRLAH 85 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--H-H-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888999999999999999999999997754321 1 1 1111 1111222333333333445677888
Q ss_pred HHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001505 348 RVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1065)
Q Consensus 348 ~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~ 423 (1065)
++|..+...+|+|.++++.. .+++|++++++++|++.+.+++. .+.......+.+++++++++. +.|..++..++
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~ 164 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMV 164 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 89999999999999998763 34899999999999999987654 333444444444443333332 22234444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001505 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREI----ERDSLKKYLYTCS 499 (1065)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~----E~~~l~~~~~~~~ 499 (1065)
.+++...+...+.++.++.+++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++ +.+..+.......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (585)
T TIGR01192 165 LGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASG 244 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566677777788888888888999999999999999999999998887777654332 2222221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCC
Q 001505 500 AIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KKP 578 (1065)
Q Consensus 500 ~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~-~~~ 578 (1065)
...+.... ..+.++.+|.+.+.++.++.|.+++++.++..+..|+..+...+..+.+++++.+|+.++++.++. ++.
T Consensus 245 ~~~~~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 322 (585)
T TIGR01192 245 LNRMASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP 322 (585)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 11111111 223445678888888999999999999999999999999999999999999999999999987542 111
Q ss_pred CCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEE
Q 001505 579 ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV 657 (1065)
Q Consensus 579 ~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v 657 (1065)
....+.....+.++++|++|+|+++ +++++| |+++++||+++|+||+|||||||+++|+|+++|.+|+| .+
T Consensus 323 ~~~~~~~~~~~~i~~~~v~~~y~~~-------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~ 394 (585)
T TIGR01192 323 ADAPELPNVKGAVEFRHITFEFANS-------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LI 394 (585)
T ss_pred ccCCCCCCCCCeEEEEEEEEECCCC-------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE-EE
Confidence 1111111223469999999999754 457999 99999999999999999999999999999999999999 88
Q ss_pred CC-------------eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 658 HG-------------KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 658 ~g-------------~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
+| .++||||+|++|++||+|||.+|.+ .++++.+++++.+++++++..+|+|++|.+||+|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 87 4899999999999999999999965 567788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||||||+||||++++|+|+|||||||+||+++++.+ .+.++...+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i-~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARV-KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH-HHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999998877 5667777789999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHh
Q 001505 804 EDLIADQNSELVRQMKAH 821 (1065)
Q Consensus 804 ~eL~~~~~~~~~~l~~~~ 821 (1065)
+|+++ .++.|.+++..+
T Consensus 554 ~~l~~-~~~~y~~l~~~~ 570 (585)
T TIGR01192 554 QELIQ-KDGRFYKLLRRS 570 (585)
T ss_pred HHHHH-CCChHHHHHHhC
Confidence 99998 888999988654
No 32
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.7e-67 Score=638.71 Aligned_cols=506 Identities=21% Similarity=0.253 Sum_probs=386.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 274 WKSLALNAAFAGVNTIASYIGPFLITNFVSFLS-GKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSA 352 (1065)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~ 352 (1065)
|+.+...+++.++..++..+.|++++.++|.+. +.... .. .+.+++.+++..++..+......+...+++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPL--AE-LLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCh--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888889999999999999999999874 32221 11 122222333333444444444455567788888888
Q ss_pred HHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001505 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1065)
Q Consensus 353 L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~ 428 (1065)
+...+|+|.++++.. ..++|+++|++++|++++++++. .+..+....+.+++++++++. +.|+.+++.++.+++.
T Consensus 79 lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 888999999988653 34999999999999999998764 355555554444444443332 2223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWAS 508 (1065)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 508 (1065)
..+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+...............
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777888888999999999999999999999999998888876543332222111111111111111111
Q ss_pred HHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 001505 509 PTL--VSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKA 586 (1065)
Q Consensus 509 p~~--v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~ 586 (1065)
..+ +.+..++.+.+..+.+|.|.+++++.+...+..|+..+...+..+.+++++++|+.++++.+++.......+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~-~~ 316 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCC-CC
Confidence 111 112234445555788999999999999999999999999999999999999999999998543211111111 11
Q ss_pred CCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-----
Q 001505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1065)
Q Consensus 587 ~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~----- 660 (1065)
..+.|+++|++|+|+++ ++++++| |++|+|||+++|+||+|||||||+++|+|+++|.+|+| .++|.
T Consensus 317 ~~~~i~~~~v~f~y~~~------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I-~~~g~~i~~~ 389 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADA 389 (529)
T ss_pred CCCeEEEEEEEEECCCC------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEehhhC
Confidence 23479999999999864 3578999 99999999999999999999999999999999999999 99883
Q ss_pred --------EEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHH
Q 001505 661 --------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1065)
Q Consensus 661 --------iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaL 731 (1065)
++||||+|++|++||||||.+|.+ .++++.+++++.++++++++.+|+|+||.+||+|.+|||||||||+|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 899999999999999999999875 57889999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEE
Q 001505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1065)
Q Consensus 732 ARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl 792 (1065)
|||++++|+|+||||||||||+++++.+. +.++++.+++|+|+||||++.++.||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVT-EALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999875 5677777899999999999999999999986
No 33
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-68 Score=598.24 Aligned_cols=522 Identities=21% Similarity=0.282 Sum_probs=405.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 001505 288 TIASYIGPFLITNFVSFLSGKHDHS-SYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKF 366 (1065)
Q Consensus 288 ~~~~~~~P~ll~~li~~~~~~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~~iy~K~L~ls~ 366 (1065)
-.+....|++++..+|.+.+.+..+ ........+.+++++.+..+++.-...+....+..++-......+|++.+.++.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566678999999999886332221 111122233344444444444443334444455566666667788888888765
Q ss_pred C---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 367 A---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQERF 442 (1065)
Q Consensus 367 ~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~~~~~~~~~~~~ 442 (1065)
+ ++.+|++.+.|..-...|.+++. .+..+....+++.++...+++..|...++..++.+.....+.........++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 4 45899999999999888888775 4566667778888888889999994444444444555555666677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 001505 443 HSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR-LREIERDSLKKYLYTCSAIAFLFWAS-PTLVSVITFGVC 520 (1065)
Q Consensus 443 ~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~-~R~~E~~~l~~~~~~~~~~~~~~~~~-p~~v~~~~f~~~ 520 (1065)
+++++++.++..+..-|.|.|-.+||.|+-|+.-.++..+ +++.|...++........+...-... ..++.+...+..
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~ 282 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSN 282 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999987777654 45555444333222221111111000 111112222223
Q ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEe
Q 001505 521 ILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAW 600 (1065)
Q Consensus 521 ~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sfsw 600 (1065)
-+.++.+|.+......+++.+|..|+..+...+..+.|+..-+.-.....+.+++.... ..+....++.|+|+|++|+|
T Consensus 283 gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~-~~~i~~~~~~I~F~dV~f~y 361 (591)
T KOG0057|consen 283 GIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA-ALPIELFGGSIEFDDVHFSY 361 (591)
T ss_pred hhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc-cCCcccCCCcEEEEeeEEEe
Confidence 34567899999999999999999999999999999999988887766655544422111 11222334679999999999
Q ss_pred cccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------------eEEEEec
Q 001505 601 DAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQ 666 (1065)
Q Consensus 601 ~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------------~iayv~Q 666 (1065)
+++ +++|++ |++|++||+|||||++||||||++++|+|+++ .+|+| .+|| .||||||
T Consensus 362 ~~k-------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I-~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 362 GPK-------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI-LIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred CCC-------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE-EECCeeHhhhChHHhhhheeEeCC
Confidence 865 679999 99999999999999999999999999999999 99999 9999 3999999
Q ss_pred CCCCCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 001505 667 SSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1065)
Q Consensus 667 ~pwif~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLD 745 (1065)
+..|||+||-+||.+|++. .+|+..++++..++++-+..||+|++|.+||||..|||||||||+||||+.+||+|+++|
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 9999999999999999984 556666777777899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHHHHHHHHh
Q 001505 746 DPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821 (1065)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~ 821 (1065)
||||+||++||+.+++ .+++.+++||+|+|.||++++++||+|++++||++.|.|+|+||++ +++.|.++...+
T Consensus 513 EaTS~LD~~TE~~i~~-~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 513 EATSALDSETEREILD-MIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQ 586 (591)
T ss_pred CcccccchhhHHHHHH-HHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccc
Confidence 9999999999999986 4677889999999999999999999999999999999999999999 888888886543
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.6e-67 Score=693.21 Aligned_cols=466 Identities=17% Similarity=0.201 Sum_probs=363.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001505 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1065)
Q Consensus 344 r~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l 419 (1065)
..+.+.-..+...+|++.++.+.. ..++|+++|++++|++.+++.+. .+..+...++.++.++++++.... +.++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~-~~~~ 1109 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATP-IAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345555555566677777776643 34899999999999999998764 345555566666555555443222 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1065)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1065)
+.++++++...+.....+..+..++...+.++...+..+|.++|+++||.|++|+.|.++..+..+...+..........
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444555555555566677788999999999999999999999988877655544333221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-
Q 001505 500 AIAFLFWASPTLVSVITFGVCILL-KTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKK- 577 (1065)
Q Consensus 500 ~~~~~~~~~p~~v~~~~f~~~~~~-~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~- 577 (1065)
...........+ .++..+.+.+. .+.+++|.+..++.+...+..|+..+......+.++.+|.+||.++++.+++.+
T Consensus 1190 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1190 WLAVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 111111111111 11222333333 467999999999999999999999999999999999999999999997654211
Q ss_pred --CCCCCC-CCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCc
Q 001505 578 --PITEPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1065)
Q Consensus 578 --~~~~~~-~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~ 653 (1065)
.....+ ..+.++.|+|+|++|+|+++ .+++|+| |++|++||++||||++|||||||+++|+|+++|++|+
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~ 1342 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYRED------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCC------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe
Confidence 111111 11345789999999999865 3579999 9999999999999999999999999999999999999
Q ss_pred EEEECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 654 i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
| .+|| +++||||+|.||+|||||||....++++++.+++++.|+++++++.+|+|+||+|||+|.|
T Consensus 1343 I-~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1421 (1522)
T TIGR00957 1343 I-IIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421 (1522)
T ss_pred E-EECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCc
Confidence 9 9998 4899999999999999999984346888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEe
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~ 800 (1065)
|||||||||+||||++++|+|+||||||||||++|++.| ++.|+...+++|+|+||||++++.+||+|+||++|+|+|.
T Consensus 1422 LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999998765 7788888899999999999999999999999999999999
Q ss_pred cCHHHHHhhcchHHHHHHHH
Q 001505 801 GKYEDLIADQNSELVRQMKA 820 (1065)
Q Consensus 801 Gt~~eL~~~~~~~~~~l~~~ 820 (1065)
|+|+||++ +++.|++++++
T Consensus 1501 G~~~eLl~-~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1501 GAPSNLLQ-QRGIFYSMAKD 1519 (1522)
T ss_pred CCHHHHHh-CCCHHHHHHHH
Confidence 99999998 78899998865
No 35
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-66 Score=685.04 Aligned_cols=469 Identities=17% Similarity=0.176 Sum_probs=346.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001505 343 NRIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPA 418 (1065)
Q Consensus 343 ~r~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~ 418 (1065)
.+.+.+.-..+...+|++.++.+.. .+++|+++|++++|++.+++.+. .+..+....++++.+++++... .++..
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~-~~~~~ 1056 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV-STISL 1056 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3445555556666777888877643 45899999999999999988664 3444455555544444333221 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 419 FAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTC 498 (1065)
Q Consensus 419 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (1065)
++.+.++++++.+..+..+..++.++.....++...+..+|.++|+++||.|++|++|.+...+..+...+.........
T Consensus 1057 ~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1136 (1622)
T PLN03130 1057 WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSN 1136 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222233333344444455555666777788999999999999999999988776655444333211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001505 499 SAIAFLFWASPTLVSVITFGVCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1065)
Q Consensus 499 ~~~~~~~~~~p~~v~~~~f~~~~~~-~~~Lt-----~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~ 572 (1065)
............++ ++..+.+.+. ++..+ ++.+-.++++...+..++..+......+.++.+|.+|+.++++.
T Consensus 1137 ~wl~~~l~~~~~~~-i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~ 1215 (1622)
T PLN03130 1137 RWLAIRLETLGGLM-IWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDL 1215 (1622)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11111000111111 1111222222 22211 23333344455566677777778888889999999999999987
Q ss_pred cCC-CCC---CCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc
Q 001505 573 DNQ-KKP---ITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1065)
Q Consensus 573 ~e~-~~~---~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~ 647 (1065)
|++ +.. ....+..+.++.|+|+|++|+|+++ .+++|+| ||+|++||++||||++|||||||+++|+|++
T Consensus 1216 ~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1216 PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 652 211 1111112335689999999999754 3579999 9999999999999999999999999999999
Q ss_pred cCCCCcEEEECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccc
Q 001505 648 PRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714 (1065)
Q Consensus 648 ~~~~G~i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~I 714 (1065)
+|.+|+| .+|| +++||||+|.||+|||||||.+++++++++.+++++.|+++++++.+|+|+||+|
T Consensus 1290 ~p~~G~I-~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~V 1368 (1622)
T PLN03130 1290 ELERGRI-LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEV 1368 (1622)
T ss_pred CCCCceE-EECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccc
Confidence 9999999 9998 4899999999999999999999988999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeC
Q 001505 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1065)
Q Consensus 715 Ge~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~ 794 (1065)
||+|.||||||||||+||||++++|+|+||||||||||++|++.| ++.|+...+++|+|+||||++++.+||+|+||++
T Consensus 1369 ge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I-q~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1369 SEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDA 1447 (1622)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999998765 7889888899999999999999999999999999
Q ss_pred CEEEEecCHHHHHhhcchHHHHHHHHh
Q 001505 795 GKIEQSGKYEDLIADQNSELVRQMKAH 821 (1065)
Q Consensus 795 G~I~e~Gt~~eL~~~~~~~~~~l~~~~ 821 (1065)
|+|+|.|+|+||++++++.|.++++..
T Consensus 1448 G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1448 GRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred CEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 999999999999983368999998654
No 36
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-69 Score=592.59 Aligned_cols=527 Identities=17% Similarity=0.283 Sum_probs=404.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 280 NAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAK------TVESLTQRQWYFGANRIGIRVRSAL 353 (1065)
Q Consensus 280 ~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~------~~~~l~~~~~~~~~~r~~~~iR~~L 353 (1065)
..++..+.-++....|.+.+.+++-+..+..+ .+...+.+++..|+-. ++..+-...| .++..--...+
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~-~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLW----i~VqQyttR~i 294 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDTF-QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLW----IPVQQYTTREI 294 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcchh-hHHHHHHHHHHHHHhcCCccccchhhhheeEE----EEhhHhHHHHH
Confidence 33444455566667799999999988755443 2221233333322221 1111111111 11111112234
Q ss_pred HHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001505 354 TVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVM 429 (1065)
Q Consensus 354 ~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~ 429 (1065)
-..+|++...+|.. .|.+||++..|....+.+. +..+ ..++-...+.++++++.++....+|..+..++.+.+..
T Consensus 295 e~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~ 373 (790)
T KOG0056|consen 295 ETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYC 373 (790)
T ss_pred HHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHh
Confidence 45667777766643 4689999999987776666 3332 44555666778888777666666565555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 430 VSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ----EFLKKLLRLREIERDSLKKYLYTCSAIAFLF 505 (1065)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~----~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~ 505 (1065)
-+...+.....++++++..+-.+--....+.|-|..++|.|+.|+ ++.+.|.+..+.|.+.+....++......+.
T Consensus 374 ~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii 453 (790)
T KOG0056|consen 374 YVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII 453 (790)
T ss_pred heeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 555556666677888777666666666789999999999999886 4666677777777765544333332222211
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCC
Q 001505 506 WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTS 584 (1065)
Q Consensus 506 ~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~~~ 584 (1065)
-. .+.....+.+|.+..+.+|.|+..-+.++.-.+..|++.+......++...+-++|+.+.+++++ -.|.....|.
T Consensus 454 ~l--gll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl 531 (790)
T KOG0056|consen 454 GL--GLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPL 531 (790)
T ss_pred hh--HHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCc
Confidence 11 12222234556666778999999999999999999999999999999999999999999998766 2222222333
Q ss_pred CCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----
Q 001505 585 KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1065)
Q Consensus 585 ~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---- 659 (1065)
...++.|+|+|++|+|+++ +|+|+| |++++||+.+|+|||||+||||++++|.++++..+|+| .+||
T Consensus 532 ~~~~G~i~fsnvtF~Y~p~-------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI-~iDgqdIr 603 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYDPG-------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI-TIDGQDIR 603 (790)
T ss_pred cccCCeEEEEEeEEecCCC-------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE-EEcCchHH
Confidence 4456889999999999865 899999 99999999999999999999999999999999999999 9998
Q ss_pred ---------eEEEEecCCCCCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 ---------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 ---------~iayv~Q~pwif~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
+||.|||+..+||+||.+||.||+|- ..|+..++.+|++.++-|-.+|+|++|.|||||..||||+|||+
T Consensus 604 nvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRV 683 (790)
T KOG0056|consen 604 NVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRV 683 (790)
T ss_pred HHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhH
Confidence 48999999999999999999999984 45667788899999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhh
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIAD 809 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~ 809 (1065)
|+||+++++|.|++|||+|||||.+|++.| |.++..+.++||.|+|+||++++-+||.|+|++||+|+|.|+|+||+.+
T Consensus 684 AiARtiLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 684 AIARTILKAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHHHHHhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 999999999999999999999999999987 8899999999999999999999999999999999999999999999995
Q ss_pred cchHHHHHHHHhhh
Q 001505 810 QNSELVRQMKAHRK 823 (1065)
Q Consensus 810 ~~~~~~~l~~~~~~ 823 (1065)
.++.|+++.+.++.
T Consensus 763 dgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 763 DGGAYADMWQAQQA 776 (790)
T ss_pred cCCcHHHHHHHHHh
Confidence 68999999987654
No 37
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-65 Score=677.01 Aligned_cols=468 Identities=16% Similarity=0.161 Sum_probs=346.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001505 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1065)
Q Consensus 344 r~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL~~~lg~~~~l 419 (1065)
+.+.+.-..+...++++.++.+.. ..++|+++|++++|++.+++.+.. +..+....++++.+++++..... +..+
T Consensus 976 ~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~~ 1054 (1495)
T PLN03232 976 SSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST-ISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 445555555556667777776643 348999999999999999887643 33444444444444433332111 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1065)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1065)
+.+.+.+++........+..+..++.....++...+..+|.++|+++||.|++|+.|.++.++..+...+..........
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1495)
T PLN03232 1055 AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNR 1134 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222233333445555566677778889999999999999999999988776655444332221111111
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001505 500 AIAFLFWASPTLVSVITF-GVCILL-KTPLT-----SGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKE 572 (1065)
Q Consensus 500 ~~~~~~~~~p~~v~~~~f-~~~~~~-~~~Lt-----~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~ 572 (1065)
........ ....++.+ +.+.+. .+.+. ++.+..++++...+..|+..+...+..+.++.+|.+||.++++.
T Consensus 1135 wl~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~ 1212 (1495)
T PLN03232 1135 WLTIRLET--LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDL 1212 (1495)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11110000 11111112 222222 22221 22333355566677889999999999999999999999999986
Q ss_pred cCC-CCC-CC-CCC-CCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc
Q 001505 573 DNQ-KKP-IT-EPT-SKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI 647 (1065)
Q Consensus 573 ~e~-~~~-~~-~~~-~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~ 647 (1065)
|++ ++. .. ..+ ..+.++.|+|+|++|+|+++ .+++|+| |++|++||++||||++|||||||+++|+|++
T Consensus 1213 ~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred CccccccccCCCCCCCCCCCCcEEEEEEEEEECCC------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 642 211 11 111 11334679999999999654 3579999 9999999999999999999999999999999
Q ss_pred cCCCCcEEEECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccc
Q 001505 648 PRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVV 714 (1065)
Q Consensus 648 ~~~~G~i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~I 714 (1065)
+|++|+| .+|| +++||||+|.||+|||||||.+++++++++.+++++.|+|+++++.+|+|+||+|
T Consensus 1287 ~p~~G~I-~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v 1365 (1495)
T PLN03232 1287 ELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEV 1365 (1495)
T ss_pred cCCCceE-EECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCcee
Confidence 9999999 9998 4899999999999999999999988999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeC
Q 001505 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1065)
Q Consensus 715 Ge~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~ 794 (1065)
||+|.||||||||||+||||++++|+|+||||||||||++|++.| ++.|+...+++|+|+||||++++.+||+|+||++
T Consensus 1366 ~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I-q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1366 SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI-QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSS 1444 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999998765 7889888899999999999999999999999999
Q ss_pred CEEEEecCHHHHHhhcchHHHHHHHHhh
Q 001505 795 GKIEQSGKYEDLIADQNSELVRQMKAHR 822 (1065)
Q Consensus 795 G~I~e~Gt~~eL~~~~~~~~~~l~~~~~ 822 (1065)
|+|+|.|+|+||++++++.|.++++.+.
T Consensus 1445 G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1445 GQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999834468999986543
No 38
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-65 Score=574.26 Aligned_cols=540 Identities=20% Similarity=0.271 Sum_probs=384.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANR 344 (1065)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 344 (1065)
+++...+ .|+.+.++.+++++..+.....-.+-+.+|....-........ .++-+.+.=...+.++.....-...+..
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~-~~~p~a~VR~~aI~Rt~~RY~ERlvsH~ 84 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFN-VMLPSAGVRGLAILRTAARYVERLVSHD 84 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3444444 7777888877777766665554444555665322111000111 1111111111222333322211222344
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC--C-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHH
Q 001505 345 IGIRVRSALTVLIYKRSMAIKFAG--P-SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLAL--VILYKNLGAAPAF 419 (1065)
Q Consensus 345 ~~~~iR~~L~~~iy~K~L~ls~~~--~-~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~al--~lL~~~lg~~~~l 419 (1065)
...|+-+.++..+|+|....+... + .+|+++|++..|++.+++.+..+...|...+-++.+. .+-+..++ .+.+
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~-~All 163 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP-LALL 163 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH-HHHH
Confidence 556777888889999998877643 2 8999999999999999999887776665544333332 23244455 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1065)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1065)
.++...+..+.+...+.+..++..++..+.+..--+...|.+.|+...+++|.++.|.+.+++.-+.=.+.-+|......
T Consensus 164 l~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~ 243 (573)
T COG4987 164 LGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTG 243 (573)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556666666777777777777777889999999999999999999988776532111111112222222
Q ss_pred HHHHHHHHHH-HHHH-HHHHHHHHHhcCCcC-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCC
Q 001505 500 AIAFLFWASP-TLVS-VITFGVCILLKTPLT-SGAVLSALATFRILQEPIYNL-PELISMIAQTKVSLYRIQEFIKEDNQ 575 (1065)
Q Consensus 500 ~~~~~~~~~p-~~v~-~~~f~~~~~~~~~Lt-~~~~ft~l~l~~~l~~pl~~l-~~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1065)
...+...... .++. .+....+..-.|..+ +..+...+..|..+ .++..+ |..+....|+..|..|+.+.++.+++
T Consensus 244 ~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e 322 (573)
T COG4987 244 LSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASARRLNDILDQKPE 322 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHHHHHhhhccCCcc
Confidence 2222211111 1111 111111111123333 23333333323333 223222 37778899999999999999988762
Q ss_pred -CCCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCc
Q 001505 576 -KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGA 653 (1065)
Q Consensus 576 -~~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~ 653 (1065)
..+.+..+. .+..++++|++|+||++ +.++|+| ||++++||++||+|+||||||||+++|.|-++|++|+
T Consensus 323 ~~~~~~~~~~--~~~~l~~~~vsF~y~~~------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~ 394 (573)
T COG4987 323 VTFPDEQTAT--TGQALELRNVSFTYPGQ------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394 (573)
T ss_pred cCCCccccCC--ccceeeeccceeecCCC------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 211111111 12279999999999986 4689999 9999999999999999999999999999999999999
Q ss_pred EEEECC-------------eEEEEecCCCCCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 654 AIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 654 i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
| ..+| +++.++|.+.+|++|+|||+..++|. ++|...++++..+|++.++..|+|++|.+||+|.
T Consensus 395 i-~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~ 473 (573)
T COG4987 395 I-TLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR 473 (573)
T ss_pred e-eECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCC
Confidence 9 9988 48999999999999999999999984 6788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e 799 (1065)
+||||||||++|||++.+|++++||||||.+||+.|++++.+ .+...++|||+|+||||+..++.+|+|+|||||+|+|
T Consensus 474 ~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~-ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie 552 (573)
T COG4987 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLA-LLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIE 552 (573)
T ss_pred cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHH-HHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeee
Confidence 999999999999999999999999999999999999999976 4566778999999999999999999999999999999
Q ss_pred ecCHHHHHhhcchHHHHHHH
Q 001505 800 SGKYEDLIADQNSELVRQMK 819 (1065)
Q Consensus 800 ~Gt~~eL~~~~~~~~~~l~~ 819 (1065)
+|+|+||++ +++.|.++.+
T Consensus 553 ~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 553 EGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred cCCHHhhhc-cccHHHHHhc
Confidence 999999999 8899988753
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-64 Score=669.04 Aligned_cols=462 Identities=17% Similarity=0.195 Sum_probs=353.9
Q ss_pred HHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001505 351 SALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTI 426 (1065)
Q Consensus 351 ~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~ 426 (1065)
..+...+|++.++.+.. ..++|+++|++++|++.+.+.+. .+..+....+.++.++++++.... +..++.+.+++
T Consensus 1031 ~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p-~~~~~~i~~~~ 1109 (1560)
T PTZ00243 1031 RNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQP-FVLVALVPCGY 1109 (1560)
T ss_pred HHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34556677777776643 34899999999999999998764 344555555555555444443222 32222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001505 427 FVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFL-F 505 (1065)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~-~ 505 (1065)
+...+...+.+..+..++.....++.-.+.++|.++|+++||.|++|+.|.++..+.-+...+...+........... .
T Consensus 1110 ~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~ 1189 (1560)
T PTZ00243 1110 LYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVE 1189 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555566666666777788899999999999999999999988887554333322211111111111111 1
Q ss_pred HHH-HHHHHHHHHHHH--HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC-CC--
Q 001505 506 WAS-PTLVSVITFGVC--ILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QK-KP-- 578 (1065)
Q Consensus 506 ~~~-p~~v~~~~f~~~--~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e-~~-~~-- 578 (1065)
... ...+.++.++++ ....+.+++|.+..++.+...+..|+..+...+..+.++++|++||.++++..+ ++ ..
T Consensus 1190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~ 1269 (1560)
T PTZ00243 1190 FLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELD 1269 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 111 111111222222 222345789988888888888999999999999999999999999999996432 11 00
Q ss_pred ---------------------C-CC-C----CCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEEC
Q 001505 579 ---------------------I-TE-P----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCG 630 (1065)
Q Consensus 579 ---------------------~-~~-~----~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG 630 (1065)
. .. . +..+..+.|+|+|++|+|+++ .+++|+| ||+|++||++||||
T Consensus 1270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~------~~~vL~~vsf~I~~GekVaIVG 1343 (1560)
T PTZ00243 1270 EEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG------LPLVLRGVSFRIAPREKVGIVG 1343 (1560)
T ss_pred ccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC------CCceeecceEEECCCCEEEEEC
Confidence 0 00 0 011123579999999999764 3569999 99999999999999
Q ss_pred CCCCChHHHHHHHhCcccCCCCcEEEECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHh
Q 001505 631 SVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGC 697 (1065)
Q Consensus 631 ~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac 697 (1065)
++|||||||+++|+|+++|.+|+| .+|| .|+||||+|.||+|||||||..+.++++++.+++++.|
T Consensus 1344 rTGSGKSTLl~lLlrl~~p~~G~I-~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a 1422 (1560)
T PTZ00243 1344 RTGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELV 1422 (1560)
T ss_pred CCCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHC
Confidence 999999999999999999999999 9998 48999999999999999999988788899999999999
Q ss_pred cchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEE
Q 001505 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN-SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776 (1065)
Q Consensus 698 ~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~-adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlV 776 (1065)
+|+++++.+|+|+||+|||+|.||||||||||+||||++++ |+|+||||||||||++|++.| ++.|+...+++|+|+|
T Consensus 1423 ~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I-q~~L~~~~~~~TvI~I 1501 (1560)
T PTZ00243 1423 GLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSAFSAYTVITI 1501 (1560)
T ss_pred CChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHCCCCEEEEE
Confidence 99999999999999999999999999999999999999996 899999999999999998876 7788888899999999
Q ss_pred cCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHHHHHHHHh
Q 001505 777 THQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAH 821 (1065)
Q Consensus 777 TH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~ 821 (1065)
|||++++.+||+|+||++|+|+|.|+|+||++++++.|.++++..
T Consensus 1502 AHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1502 AHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred eccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999999974578999998654
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.8e-61 Score=637.01 Aligned_cols=467 Identities=19% Similarity=0.233 Sum_probs=353.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc---CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001505 344 RIGIRVRSALTVLIYKRSMAIKF---AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAF 419 (1065)
Q Consensus 344 r~~~~iR~~L~~~iy~K~L~ls~---~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l 419 (1065)
+.+.+.-..+...++++.++.+. ...++|+++|+++.|++.+.+.+. .+..+....+.+++.+++++...+ +.++
T Consensus 951 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p-~l~l 1029 (1490)
T TIGR01271 951 HTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQP-YIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34445555555666777776654 234899999999999999998764 345555555555555554443333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 420 AALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCS 499 (1065)
Q Consensus 420 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~ 499 (1065)
+.++++++.+.+..+..+..+..++.....++...+..+|.++|+.+||.|++|+.|.++..+.-+...+..........
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444455555556666677778888999999999999999999999988877654422111111111111
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CC
Q 001505 500 AIAFLF-WASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ-KK 577 (1065)
Q Consensus 500 ~~~~~~-~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~-~~ 577 (1065)
...... .....++..+.+ ..+.....++|.+..++++...+..++..+...+..+..+++|.+||.+|++.|++ ..
T Consensus 1110 wl~~~~~~i~~~~~~~~~~--l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIAVTF--IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 110000 000011111111 11112234566666666677777888888888899999999999999999976542 11
Q ss_pred CCC----------------C-CCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHH
Q 001505 578 PIT----------------E-PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSL 639 (1065)
Q Consensus 578 ~~~----------------~-~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTL 639 (1065)
..+ . .+..+..+.|+|+|++|+|+++ .+++|+| ||+|++||++||||++|||||||
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~------~~~vL~~is~~I~~GekvaIvGrSGsGKSTL 1261 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTL 1261 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC------CcceeeccEEEEcCCCEEEEECCCCCCHHHH
Confidence 100 0 0111234689999999999864 3679999 99999999999999999999999
Q ss_pred HHHHhCcccCCCCcEEEECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhh
Q 001505 640 LSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMW 706 (1065)
Q Consensus 640 l~~LlGe~~~~~G~i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~L 706 (1065)
+++|+|+++ .+|+| .+|| +++||||+|.||+|||||||..+.++++++.+++++.|+|.++++.+
T Consensus 1262 l~lL~rl~~-~~G~I-~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~l 1339 (1490)
T TIGR01271 1262 LSALLRLLS-TEGEI-QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQF 1339 (1490)
T ss_pred HHHHhhhcC-CCcEE-EECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhC
Confidence 999999997 89999 9998 48999999999999999999877778899999999999999999999
Q ss_pred cCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcC
Q 001505 707 ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAA 786 (1065)
Q Consensus 707 p~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~a 786 (1065)
|+|+||+|||+|.||||||||||+||||++++|+|+|||||||+||++|++.| ++.|+...+++|+|+||||++++.++
T Consensus 1340 p~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I-~~~L~~~~~~~TvI~IaHRl~ti~~~ 1418 (1490)
T TIGR01271 1340 PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII-RKTLKQSFSNCTVILSEHRVEALLEC 1418 (1490)
T ss_pred ccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998776 67888888999999999999999999
Q ss_pred CEEEEEeCCEEEEecCHHHHHhhcchHHHHHHHHhhh
Q 001505 787 DLVLVMKDGKIEQSGKYEDLIADQNSELVRQMKAHRK 823 (1065)
Q Consensus 787 D~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~~~~~~ 823 (1065)
|+|+||++|+|+|.|+|+||++ .++.|.++++.+.+
T Consensus 1419 DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1419 QQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAADR 1454 (1490)
T ss_pred CEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhCh
Confidence 9999999999999999999998 78899999876554
No 41
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.8e-61 Score=581.19 Aligned_cols=509 Identities=15% Similarity=0.150 Sum_probs=368.1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 268 VIIH-AVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIG 346 (1065)
Q Consensus 268 ~l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~ 346 (1065)
.+++ .+|+.+++..++.++..++....|.+++.+++...... ... .+.+++..++.. ++.....+...+.+
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~---~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~ 81 (555)
T TIGR01194 10 ALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG---QGS-LFSFGGLCLLAL----LFRIGADIFPAYAG 81 (555)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---chH-HHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3566 78888999999999999999999999998876321110 101 111222111112 22222233356677
Q ss_pred HHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001505 347 IRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFAALF 423 (1065)
Q Consensus 347 ~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~ 423 (1065)
.++...++..+|+|.++++.. ..++|++++++++|++.+++++..+..+....+.+++++++++.. .|..+++.++
T Consensus 82 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~li~l~ 160 (555)
T TIGR01194 82 MHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYL-SVPMFAITIS 160 (555)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 888888888999999998763 348999999999999999987755445454444444444443322 2233443344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 424 STIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ--EFLKKLLRLREIERDSLKKYLYTCSAI 501 (1065)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~--~f~~~i~~~R~~E~~~l~~~~~~~~~~ 501 (1065)
.+++.+++.....++.++...+..+..++..+.+.|.++|++++|.++.++ ...+++++..++-.+...+........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T TIGR01194 161 AIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAA 240 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555666677777778888899999999999999999999853 333333332221111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C-C
Q 001505 502 AFLFWASPTLVSVITFGVCIL---LKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-Q-K 576 (1065)
Q Consensus 502 ~~~~~~~p~~v~~~~f~~~~~---~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e-~-~ 576 (1065)
...... +..+.++.+++ ..+.+|.|.+++++.+...+..|+..+...+..+.++++|.+||.++++.++ + +
T Consensus 241 ~~~~~~----~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~ 316 (555)
T TIGR01194 241 ENFGQL----LFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEP 316 (555)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 110111 11111111111 1257999999999999999999999999999999999999999999986422 1 1
Q ss_pred C--CCCCC-----CCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc
Q 001505 577 K--PITEP-----TSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1065)
Q Consensus 577 ~--~~~~~-----~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~ 648 (1065)
. ..+.. +.......|+++|++|+|++.+. ...++|+| |+++++||+++|+||+|||||||+++|+|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~---~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 393 (555)
T TIGR01194 317 ELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEG---SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI 393 (555)
T ss_pred cccccccccccccccCCCCceEEEEEEEEEeCCCCC---CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 0 00000 11112357999999999975300 12368999 99999999999999999999999999999999
Q ss_pred CCCCcEEEECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCcccc
Q 001505 649 RISGAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1065)
Q Consensus 649 ~~~G~i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IG 715 (1065)
|++|+| .++| .++||+|+|++|++|++||+ ..+.++++.+++++.++++++++.+|+|++|.
T Consensus 394 p~~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-- 468 (555)
T TIGR01194 394 PQEGEI-LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-- 468 (555)
T ss_pred CCCcEE-EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc--
Confidence 999999 8987 37999999999999999996 23456778899999999999999999999994
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhcCCEEEEEeC
Q 001505 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1065)
Q Consensus 716 e~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~l~~aD~Ilvl~~ 794 (1065)
.+|||||||||+||||++++|+|+|||||||+||+++++.+.+..++.+ .+++|+|+||||++.+..||+|++|+|
T Consensus 469 ---~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~ 545 (555)
T TIGR01194 469 ---TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAA 545 (555)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999998876555444 468999999999999999999999999
Q ss_pred CEEEEe
Q 001505 795 GKIEQS 800 (1065)
Q Consensus 795 G~I~e~ 800 (1065)
|+|+|.
T Consensus 546 G~i~~~ 551 (555)
T TIGR01194 546 GCIVKD 551 (555)
T ss_pred CEEEEe
Confidence 999874
No 42
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.1e-61 Score=537.39 Aligned_cols=527 Identities=21% Similarity=0.273 Sum_probs=418.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 263 TSLPQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGA 342 (1065)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~ 342 (1065)
.....+....+++.++..+++..+-.++..++|+++-.+.|-+-...+.+.. ..+.+.....+.+..+....-.+..
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TL---v~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTL---VMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888888889999999999999987665443222 2233333334444455544445667
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001505 343 NRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-----YIHRIWLLPVQVFLALVILYKNLGAAP 417 (1065)
Q Consensus 343 ~r~~~~iR~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~-----~~~~~w~~pl~i~~al~lL~~~lg~~~ 417 (1065)
.|+|.++-..|...||.-+++.+...+..|+-..-+ .|.+.+..|+. -+.+.-..|+-+.+ ++++...+| +.
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG-~~ 164 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLG-LI 164 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHH-HH
Confidence 899999999999999998876555444444333222 38999998874 23444345654443 456677788 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 418 AFAALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYT 497 (1065)
Q Consensus 418 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~ 497 (1065)
+++|.++++.+..+|-.+.+ +--++..+..-+|....+-.++|..+|+.+|..+...+++.+....-+++..+....
T Consensus 165 a~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 165 ALAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 77777777666666665554 344566777888999999999999999999999999999888766655554443333
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001505 498 CSAIAFLFWAS--PTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1065)
Q Consensus 498 ~~~~~~~~~~~--p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1065)
........-.. ..-..++..|+|+.+++++|+|.+++.--+..-.-.|+........++..++.|.+|++++|...+.
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 22222111111 1123355678898999999999999988888777889999999999999999999999999987552
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcE
Q 001505 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1065)
Q Consensus 576 ~~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i 654 (1065)
... ..+.+..++.+.++++++.-|+. ++|++++ ||++++||-++|+||||||||||.++|.|-.+|.+|+|
T Consensus 322 ~~~--~m~LP~P~g~L~Ve~l~~~PPg~------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V 393 (580)
T COG4618 322 AAE--RMPLPAPQGALSVERLTAAPPGQ------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393 (580)
T ss_pred ccC--CCCCCCCCceeeEeeeeecCCCC------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE
Confidence 222 23334456789999999987665 5899999 99999999999999999999999999999999999999
Q ss_pred EEECC-------------eEEEEecCCCCCCCcHHHHH-hcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 655 IKVHG-------------KKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 655 ~~v~g-------------~iayv~Q~pwif~gTIreNI-lfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
++|| +|+|.||+--||.|||+||| .|+++.|+++.-++.++++.|+-|..||+||||.|||+|.+
T Consensus 394 -RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~ 472 (580)
T COG4618 394 -RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGAT 472 (580)
T ss_pred -EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCC
Confidence 9998 69999999999999999999 58888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhcCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e 799 (1065)
|||||||||+||||+|.||.+++||||-|+||.+-|..+. ++|... .+|.|+|+||||++.+..+|+|++|+||++..
T Consensus 473 LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~-~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~ 551 (580)
T COG4618 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALA-AAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAA 551 (580)
T ss_pred CCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHH-HHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHh
Confidence 9999999999999999999999999999999999887774 566554 46899999999999999999999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+-+|.++
T Consensus 552 FG~r~eVLa 560 (580)
T COG4618 552 FGPREEVLA 560 (580)
T ss_pred cCCHHHHHH
Confidence 999999987
No 43
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-61 Score=531.24 Aligned_cols=454 Identities=22% Similarity=0.295 Sum_probs=366.9
Q ss_pred HHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001505 353 LTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFV 428 (1065)
Q Consensus 353 L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~ 428 (1065)
+.-..|.+.++|+.. ++.+|.+..-+....+.|+...++ +..+....+++.++.+++++..||+.+...++.+++.
T Consensus 17 la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY 96 (497)
T COG5265 17 LAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILY 96 (497)
T ss_pred HHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 344556676666542 346776666566566666666654 4455667789999999999999988887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 001505 429 MVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR----LREIERDSLKKYLYTCSAIAFL 504 (1065)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~----~R~~E~~~l~~~~~~~~~~~~~ 504 (1065)
..+..........++++++++-.+......+.|-|..++|.|+-|+.+.++..+ .++.+.+......++......+
T Consensus 97 ~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I 176 (497)
T COG5265 97 LLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAI 176 (497)
T ss_pred HHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 666666665556667776666666777889999999999999999887766654 3333333222222222211111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCC
Q 001505 505 FWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPT 583 (1065)
Q Consensus 505 ~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~~ 583 (1065)
+.. .+....+.+..-+..+.+|.|+.....++...+..|+..+......+.|++..+++..+.+..+- ..+.....+
T Consensus 177 ~~~--~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~ 254 (497)
T COG5265 177 FST--GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPP 254 (497)
T ss_pred HHH--HHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCcc
Confidence 111 11222233344455788999999999999999999999999999999999999999999998654 222211112
Q ss_pred CC-CCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-
Q 001505 584 SK-ASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK- 660 (1065)
Q Consensus 584 ~~-~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~- 660 (1065)
.. ...+.|.|+|++|.|+++ .|.|++ |+++++|+++||||++|+||||++.+|.++|++++|.| .++|+
T Consensus 255 L~~~~~g~v~F~~V~F~y~~~-------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I-~id~qd 326 (497)
T COG5265 255 LWPVRLGAVAFINVSFAYDPR-------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI-TIDGQD 326 (497)
T ss_pred ccccccceEEEEEEEeecccc-------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE-EEcchh
Confidence 22 335679999999999976 789999 99999999999999999999999999999999999999 99984
Q ss_pred ------------EEEEecCCCCCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHH
Q 001505 661 ------------KAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1065)
Q Consensus 661 ------------iayv~Q~pwif~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQ 727 (1065)
||.|||+..|||+|+..||.+|+|. .+++...+.++++++++|+.+|+|++|.|||||-.||||+||
T Consensus 327 ir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 327 IRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 8999999999999999999999984 667888999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHH
Q 001505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 728 RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
|+++||+++++|+|++|||+|||||.|||+.| +..++...+++|.++|+||++++-+||+|+||+||+|+|.|+|+||+
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHH
Confidence 99999999999999999999999999999877 78899999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHH
Q 001505 808 ADQNSELVRQM 818 (1065)
Q Consensus 808 ~~~~~~~~~l~ 818 (1065)
+ .++.|+++.
T Consensus 486 ~-~~g~ya~mw 495 (497)
T COG5265 486 A-AGGLYAEMW 495 (497)
T ss_pred H-cCChHHHHh
Confidence 9 899999875
No 44
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2e-58 Score=560.62 Aligned_cols=508 Identities=15% Similarity=0.169 Sum_probs=356.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 265 LPQVIIHAVWKSLALNAAFAGVNTIASYIG-PFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1065)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1065)
+++.+++.+++.++...++.++..++..+. |++.+.++|.+.+ . . .. ...+++.+++..++..+ ..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~-~-~~--~~~~~~~~~~~~~~~~~----~~~~~~ 73 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S-L-LV--LPEFLGLLLLLMAVTLG----SQLALT 73 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c-c-hH--HHHHHHHHHHHHHHHHH----HHHHHH
Confidence 567788889999999888888888888774 6777888886542 1 1 11 11111111111222222 222334
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001505 344 RIGIRVRSALTVLIYKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1065)
Q Consensus 344 r~~~~iR~~L~~~iy~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~al~lL~~~lg~~~~l~ 420 (1065)
+++.++...++..+|+|.++++.. .+++|+++|++++|++.+..++..+..++...+.+++++++++.. .|..+++
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~-~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWL-SPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH
Confidence 556666666777888888887653 348999999999999999887655666777777666666655543 3255555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLS--WEQEFLKKLLRLREIERDSLKKYLYTC 498 (1065)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~--wE~~f~~~i~~~R~~E~~~l~~~~~~~ 498 (1065)
.++++++.+.+...+.++.++..++.++..+++.+.++|.++|++++++.+ .++.+.++.++..++-.+...+.....
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Confidence 555555666667777888888888889999999999999999999997432 223444444432221111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001505 499 SAIAFLFWASPTLVSVITFGVCILLKTP---LTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1065)
Q Consensus 499 ~~~~~~~~~~p~~v~~~~f~~~~~~~~~---Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1065)
....... .++..+.++.+.+.++. .+.+.+..+..+...+..|+..+...+..+.+++++.+|+.++++.+++
T Consensus 233 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 233 LSAVNWS----NIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1111110 11111122222222211 2222222222233346789999999999999999999999999865442
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcE
Q 001505 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1065)
Q Consensus 576 ~~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i 654 (1065)
++.....+ .+..+.|+++|++|+|+++ +++|+| |+++++||++||+||+|||||||+++|+|+++|.+|+|
T Consensus 309 ~~~~~~~~-~~~~~~i~~~~v~f~y~~~-------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 309 AEFPRPQA-FPDWQTLELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred cccccccc-cCcCceEEEEEEEEEeCCC-------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 11111111 1112469999999999853 468999 99999999999999999999999999999999999999
Q ss_pred EEECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 655 IKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 655 ~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++| +++||+|+|++|++|++|| +.+.++++.+++++.+++.++++. ++|. .+|.+|
T Consensus 381 -~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~L 450 (547)
T PRK10522 381 -LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKL 450 (547)
T ss_pred -EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCC
Confidence 8887 4899999999999999999 556677788888888888776653 4332 258999
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhcCCEEEEEeCCEEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e 799 (1065)
||||||||+||||++++|+|+|||||||+||+++++.+.+ .+...+ +++|+|+||||++.++.||+|++|++|+++|
T Consensus 451 SgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~-~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ-VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999987754 454443 4899999999999999999999999999998
Q ss_pred e-cCHHH
Q 001505 800 S-GKYED 805 (1065)
Q Consensus 800 ~-Gt~~e 805 (1065)
. |++.|
T Consensus 530 ~~~~~~~ 536 (547)
T PRK10522 530 LTGEERD 536 (547)
T ss_pred ecCCchh
Confidence 6 44433
No 45
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-57 Score=573.68 Aligned_cols=464 Identities=21% Similarity=0.266 Sum_probs=358.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--C-CCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001505 345 IGIRVRSALTVLIYKRSMAIKF--A-GPSSGIIINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1065)
Q Consensus 345 ~~~~iR~~L~~~iy~K~L~ls~--~-~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL~~~lg~~~~l~ 420 (1065)
.|++.-..|-..++++.++-+. . ..++|.|+|+.+.|++.+++.+.. +..+....++++.+++++-.... +..++
T Consensus 885 ~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P-~fli~ 963 (1381)
T KOG0054|consen 885 GGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTP-WFLIA 963 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHHH
Confidence 3455555555556666666443 2 338999999999999999876654 44444555555555444443333 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSA 500 (1065)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~ 500 (1065)
.+.+.+++..+..+..+-.+...+--...++--....+|.++|+-+|++|+.|++|.++....-+...+. .....+.
T Consensus 964 ~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~---~f~~~~a 1040 (1381)
T KOG0054|consen 964 IIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRA---FFLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHH---HHHHHHH
Confidence 4444444444444444433333333333455566789999999999999999999998876654433221 1122222
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-
Q 001505 501 IAFLFWASP----TLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ- 575 (1065)
Q Consensus 501 ~~~~~~~~p----~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~- 575 (1065)
+-.+..-.- .++..+++.+.+..++..++|.+--++++.-.+..-+..+......+-...+|.+||.+|.+.|++
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~ 1120 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEA 1120 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCC
Confidence 222211111 122222222222222237799998888888888888888888899999999999999999995542
Q ss_pred C---CCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCC
Q 001505 576 K---KPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS 651 (1065)
Q Consensus 576 ~---~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~ 651 (1065)
+ +....++..+.++.|+|+|++..|.++ .+++|+| |++|++||+|+|||++|||||||+++|.|..+|.+
T Consensus 1121 p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~ 1194 (1381)
T KOG0054|consen 1121 PLEIEESRPPPSWPSKGEIEFEDLSLRYRPN------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE 1194 (1381)
T ss_pred CCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC
Confidence 1 111123345678999999999999876 4789999 99999999999999999999999999999999999
Q ss_pred CcEEEECC-------------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 652 GAAIKVHG-------------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 652 G~i~~v~g-------------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
|+| .+|| +++.+||||.||+||+|.|+---.++++++.++++|.|+|++.++++|.|.|++|.|+|
T Consensus 1195 G~I-~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG 1273 (1381)
T KOG0054|consen 1195 GEI-LIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGG 1273 (1381)
T ss_pred CeE-EEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCC
Confidence 999 9998 58999999999999999999988889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~ 798 (1065)
.|+|-||||-++||||++++++|++|||+|++||++|.. ++|+.|+...+++|||.|+||++++.++|+|+|||+|+|+
T Consensus 1274 ~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~-lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1274 ENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA-LIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVV 1352 (1381)
T ss_pred ccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH-HHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEe
Confidence 999999999999999999999999999999999999965 6699999999999999999999999999999999999999
Q ss_pred EecCHHHHHhhcchHHHHHHHH
Q 001505 799 QSGKYEDLIADQNSELVRQMKA 820 (1065)
Q Consensus 799 e~Gt~~eL~~~~~~~~~~l~~~ 820 (1065)
|.|++++|++++++.|.+++.+
T Consensus 1353 EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1353 EFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred ecCChHHHHhCCcchHHHHHHH
Confidence 9999999998667888765543
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.5e-55 Score=540.15 Aligned_cols=500 Identities=17% Similarity=0.169 Sum_probs=371.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 276 SLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYH-YGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALT 354 (1065)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~-~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~ 354 (1065)
.++..+++.++.+++....|++++.++|.+.+.+.. ... ..+.+++.+++..++.++. .|...++..++|..+.
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~-~f~~~l~~~~l~~~~~~~~~~~~----~~~~~~~~~~~r~~l~ 171 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPR-NFAWILFKWFLIAPPASFINSAI----KYLLKELKLRFRVRLT 171 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 567777888888999999999999999987654321 111 0111222222333333332 3335556666777777
Q ss_pred HHHHHHHhcc----cc--CCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001505 355 VLIYKRSMAI----KF--AGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIF 427 (1065)
Q Consensus 355 ~~iy~K~L~l----s~--~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l 427 (1065)
..+.++.++- +. .++++|++.+++++|++.+.+.+. .+..+...++.++.+++.++..++|..+++.++.+++
T Consensus 172 ~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 172 RYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 6666666542 11 112589999999999999988764 4556666677777777777766774555555666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 428 VMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFWA 507 (1065)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 507 (1065)
.+.+...+.++..+...+..+..++-....+|.++|+++||.|+-|+...+++++.-++-.+...+.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77778888899999999999999999999999999999999999999887777664444333333333332222222111
Q ss_pred HH----HHHHHHHHHHHHHh-c----CCcCHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001505 508 SP----TLVSVITFGVCILL-K----TPLTSGAVLS-AL---ATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN 574 (1065)
Q Consensus 508 ~p----~~v~~~~f~~~~~~-~----~~Lt~~~~ft-~l---~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e 574 (1065)
.. ..+..+..+..++. . +.+|.|..+. ++ .++..+..|+..+...+..+.++.++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11222222232222 2 5788887655 33 34667789999999999999999999999999997533
Q ss_pred C-C-----CC-CCC-----------------CCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEE
Q 001505 575 Q-K-----KP-ITE-----------------PTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVC 629 (1065)
Q Consensus 575 ~-~-----~~-~~~-----------------~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIv 629 (1065)
+ . +. ... .......+.|+++|++|+|+++ +++++| |+++++||+++|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-------~~il~~isl~i~~Ge~~~Iv 484 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-------DVLIESLSFEVPSGNHLLIC 484 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-------CeeeecceEEECCCCEEEEE
Confidence 1 0 00 000 0001123469999999999743 468999 9999999999999
Q ss_pred CCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEecCCCCCCCcHHHHHhcCc--------ccchHHHHHHHHHhcc
Q 001505 630 GSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQSSWIQTGTIRENILFGK--------DMRQSFYEEVLEGCAL 699 (1065)
Q Consensus 630 G~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~Q~pwif~gTIreNIlfG~--------~~d~~~y~~vl~ac~L 699 (1065)
||+|||||||+++|.|++++.+|++ .+++ +++||||+|+++++|++|||.++. ..++++.+++++.+++
T Consensus 485 G~nGsGKSTLl~lL~Gl~~~~~G~i-~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 485 GPNGCGKSSLFRILGELWPVYGGRL-TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCCeE-eecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999998 7764 699999999999999999999974 2356678899999999
Q ss_pred hHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCC
Q 001505 700 NQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQ 779 (1065)
Q Consensus 700 ~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~ 779 (1065)
++.++. |.|++|..+ .|.+||||||||++||||++++|+++|||||||+||+++++.+. +.++. .++|+|+|||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~-~~l~~--~~~tvI~isH~ 638 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY-RLCRE--FGITLFSVSHR 638 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHH--cCCEEEEEeCc
Confidence 988877 999999987 56799999999999999999999999999999999999988775 45554 38999999999
Q ss_pred cchhhcCCEEEEEe
Q 001505 780 LEFLDAADLVLVMK 793 (1065)
Q Consensus 780 l~~l~~aD~Ilvl~ 793 (1065)
++.++.||+|++|+
T Consensus 639 ~~~~~~~d~il~l~ 652 (659)
T TIGR00954 639 KSLWKYHEYLLYMD 652 (659)
T ss_pred hHHHHhCCEEEEEe
Confidence 99999999999997
No 47
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-48 Score=443.80 Aligned_cols=260 Identities=21% Similarity=0.309 Sum_probs=222.0
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCCCCCccEEEeeeEEEeccc
Q 001505 525 TPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDN-QKKPITEPTSKASDVAIDIEAGEYAWDAR 603 (1065)
Q Consensus 525 ~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e-~~~~~~~~~~~~~~~~I~~~n~sfsw~~~ 603 (1065)
+++++..+|+.+++|+.+..|+..+|..... ..|+.+|+..++ +...... ..+..+.|+++|++++|++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 5689999999999999999998887765433 568999988766 2211111 12334679999999999753
Q ss_pred ccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC---------------eEE
Q 001505 604 EENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---------------KKA 662 (1065)
Q Consensus 604 ~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g---------------~ia 662 (1065)
..++|+| |++|++||+++|+|++|||||||+++|+|+++ |.+|+| .++| +++
T Consensus 94 ------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I-~idG~~i~~~~~~~~~lr~~i~ 166 (329)
T PRK14257 94 ------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI-YFLGTNTRSKKISSLELRTRIG 166 (329)
T ss_pred ------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEccccccchHhhhccEE
Confidence 3568999 99999999999999999999999999999997 468998 6644 589
Q ss_pred EEecCCCCCCCcHHHHHhcCcccc----hH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001505 663 YVPQSSWIQTGTIRENILFGKDMR----QS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1065)
Q Consensus 663 yv~Q~pwif~gTIreNIlfG~~~d----~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARA 734 (1065)
||||+||+|++||+|||.||..++ ++ .|++++++|+|.+++ ++.++++|.+|||||||||+||||
T Consensus 167 ~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 167 MVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred EEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999875432 22 367788889886654 478999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHHh
Q 001505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 735 ly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
+|++|+|+||||||||||+++.++ ++++|+++.+++|+|+|||+++++.. ||+|++|++|+|++.|+++++.+
T Consensus 240 l~~~p~IlLLDEPts~LD~~~~~~-i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 240 IALEPEVLLMDEPTSALDPIATAK-IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999887 57899888889999999999999987 99999999999999999999976
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.2e-45 Score=405.22 Aligned_cols=222 Identities=25% Similarity=0.358 Sum_probs=203.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.|+++|++++|++. ..++++| |++|++||+++|+|++|||||||+++|.|+++ .+|+| .++|
T Consensus 2 ~i~~~nls~~~~~~------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I-~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTEG------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI-QIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCCC------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEhhhCCHH
Confidence 58999999999753 2568999 99999999999999999999999999999998 79999 8888
Q ss_pred ----eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 660 ----~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
+++||||+|++|++|++||+.+..++++++..++++.++|++.+..+|+|++|.++|+|.+||||||||++||||+
T Consensus 74 ~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred HHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999974445667889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHHH
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1065)
+++|+|+||||||++||+++.+.+ ++.++...+++|+|+|||+++++..||+|++|++|+|++.|++++|++ ..+.|.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l-~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~ 231 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFK 231 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHH-HHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHH
Confidence 999999999999999999997655 677776667899999999999999999999999999999999999998 778888
Q ss_pred HHHHHh
Q 001505 816 RQMKAH 821 (1065)
Q Consensus 816 ~l~~~~ 821 (1065)
+++...
T Consensus 232 ~~~~~~ 237 (275)
T cd03289 232 QAISPS 237 (275)
T ss_pred HHHhhc
Confidence 887654
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-42 Score=350.25 Aligned_cols=198 Identities=30% Similarity=0.434 Sum_probs=173.4
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
-|+++|++.+|.. ..+|++ |++|++||.++|+|||||||||||+||.|+-++++|+| .++|
T Consensus 2 mi~i~~l~K~fg~--------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I-~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFGD--------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI-TVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeCC--------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE-EECCEeccchhhH
Confidence 4899999999975 469999 99999999999999999999999999999999999999 9998
Q ss_pred -----eEEEEecCCCCC-CCcHHHHHhcCc----cc----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -----KKAYVPQSSWIQ-TGTIRENILFGK----DM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -----~iayv~Q~pwif-~gTIreNIlfG~----~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
++|+|.|+.-|| +-|+-|||..+- .. -+++-.+.++..+|.+-....| ..|||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQ 141 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQ 141 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHH
Confidence 368999999998 679999999873 11 1234456677778877666666 4799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||||||||||.-+|+++|+|||||||||+....+.+ .++.+. .|.|.|+|||.+.|.+. ||+|+.||+|+|+++|++
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCH
Confidence 999999999999999999999999999998877754 555554 48899999999999876 999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+++..
T Consensus 221 ~~~f~ 225 (240)
T COG1126 221 EEFFD 225 (240)
T ss_pred HHHhc
Confidence 99987
No 50
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.1e-41 Score=372.44 Aligned_cols=238 Identities=35% Similarity=0.612 Sum_probs=205.1
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHH
Q 001505 565 RIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSI 643 (1065)
Q Consensus 565 RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~L 643 (1065)
.+.+.|..+.+++... +.......|+++|+++. . .++++| |++|++||+++|+|++|||||||+++|
T Consensus 16 ~~~~~~~~~~~~~~~~--~~~~~~~~l~i~nls~~---~-------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I 83 (282)
T cd03291 16 GFGELLEKAKQENNDR--KHSSDDNNLFFSNLCLV---G-------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83 (282)
T ss_pred HHHHHHhccccccccc--ccCCCCCeEEEEEEEEe---c-------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4555565544322211 12234567999999985 2 358999 999999999999999999999999999
Q ss_pred hCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 644 LGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 644 lGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
.|.++|.+|+| .++|+++|++|+++++++|++|||.++...++.++.++++++++.+.+..+|.+.+|.+++++.+|||
T Consensus 84 ~Gl~~p~~G~I-~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 84 LGELEPSEGKI-KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred hCCCCCCCcEE-EECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 99999999999 99999999999999999999999999865555677888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
|||||++||||++++|+++||||||++||+.+.+.+.+.+++.+.+++|+|++||+++.++.||+|++|++|++++.|+.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~ 242 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999877766555555568999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHH
Q 001505 804 EDLIADQNSELVR 816 (1065)
Q Consensus 804 ~eL~~~~~~~~~~ 816 (1065)
+++.+ ...++.+
T Consensus 243 ~~~~~-~~~~~~~ 254 (282)
T cd03291 243 SELQS-LRPDFSS 254 (282)
T ss_pred HHHHh-cchHHHH
Confidence 99986 4444443
No 51
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=7.4e-41 Score=364.39 Aligned_cols=219 Identities=29% Similarity=0.428 Sum_probs=194.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|+++.|+.. ..++++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPD------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV-LVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCC------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCeehHhcCHHH
Confidence 4689999999753 2568999 99999999999999999999999999999999999999 8887
Q ss_pred ---eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 660 ---~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
.++|++|++++++.|++|||.++.+ ...++..+.++...+.+.++.+|.|.++..+.++.+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 74 LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 3899999999999999999998654 334455666777788888999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHHH
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1065)
+++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.+..||+|++|++|++++.|+.+++.+ ..+.|.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~ 231 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAI-MRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYA 231 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHH-HHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh-ccChHH
Confidence 999999999999999999998766 456766667899999999999998899999999999999999999987 566665
Q ss_pred HHH
Q 001505 816 RQM 818 (1065)
Q Consensus 816 ~l~ 818 (1065)
.+.
T Consensus 232 ~~~ 234 (237)
T cd03252 232 YLY 234 (237)
T ss_pred HHH
Confidence 544
No 52
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.2e-41 Score=368.38 Aligned_cols=224 Identities=28% Similarity=0.364 Sum_probs=200.0
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------- 659 (1065)
.+.|+++|++++|++. ...+++| ||++++||+++|+|++|||||||+++|+|+++|.+|+| .++|
T Consensus 17 ~~~i~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYENN------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI-VIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCCC------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE-EECCEEhhhCC
Confidence 4679999999999753 2468999 99999999999999999999999999999999999999 8876
Q ss_pred ------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHH
Q 001505 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1065)
Q Consensus 660 ------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLAR 733 (1065)
.++||+|+|++|++|++||+......+++++.++++..++.+.++.+|.|++|.+++.+.+||||||||++|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred HHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 38999999999999999999876544556778888889999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchH
Q 001505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSE 813 (1065)
Q Consensus 734 Aly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~ 813 (1065)
|++++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.+..||+|++|++|+|++.|+++++.+..++.
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l-~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 248 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENIL-QKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGV 248 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchH
Confidence 99999999999999999999997655 56676666689999999999999999999999999999999999998734455
Q ss_pred HHHHHH
Q 001505 814 LVRQMK 819 (1065)
Q Consensus 814 ~~~l~~ 819 (1065)
|.+++.
T Consensus 249 ~~~~~~ 254 (257)
T cd03288 249 FASLVR 254 (257)
T ss_pred HHHHHh
Confidence 666553
No 53
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.6e-41 Score=357.70 Aligned_cols=200 Identities=54% Similarity=0.981 Sum_probs=183.6
Q ss_pred EEEeeeEEEecccccccCCC--cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecC
Q 001505 591 IDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~--~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~ 667 (1065)
++++|++++|++. .. .++++| |++|++||+++|+||+|||||||+++|+|+++|.+|+| .++|+++|++|+
T Consensus 1 l~~~~l~~~~~~~-----~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSG-----EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCC-----CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcCEEEEEecC
Confidence 4789999999753 11 368999 99999999999999999999999999999999999999 999999999999
Q ss_pred CCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001505 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1065)
Q Consensus 668 pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp 747 (1065)
|.++++|++|||.++.++++++..++.+.+++.+.+..+|.|++|.+++++.+||||||||++||||++++|+++|||||
T Consensus 75 ~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 75 PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred chhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99999999999999877777778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEEeCCE
Q 001505 748 FSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1065)
Q Consensus 748 ~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl~~G~ 796 (1065)
|++||++..+.+++..+.... +++|+|++||+++.++.||+|++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999998888776665544 3689999999999998899999999985
No 54
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-40 Score=356.64 Aligned_cols=217 Identities=32% Similarity=0.511 Sum_probs=193.0
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|+.+ .++++| |++|++|++++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v-~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG-------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC-------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEhhhCCHHH
Confidence 4689999999643 458899 99999999999999999999999999999999999999 8887
Q ss_pred ---eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 660 ---~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
.++|++|+|+++++|++||+.++.+ .+++...+.++.+++.+.++.+|.|++|.++.+..+||||||||++||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 73 LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 2899999999999999999998754 334456677888899999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHHH
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1065)
+++|+++||||||++||+++.+.+. +.+..+.+++|+|++||+++.+..||++++|++|++++.|+.+++.+ ....+.
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~-~~~~~~ 230 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYA 230 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh-cccHHH
Confidence 9999999999999999999987664 56766656899999999999999999999999999999999999887 555554
Q ss_pred HH
Q 001505 816 RQ 817 (1065)
Q Consensus 816 ~l 817 (1065)
..
T Consensus 231 ~~ 232 (236)
T cd03253 231 EM 232 (236)
T ss_pred HH
Confidence 43
No 55
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-41 Score=347.07 Aligned_cols=205 Identities=29% Similarity=0.432 Sum_probs=176.0
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+|+|+++.|.+ ..+++| ||+|++||+++++|||||||||+|+.|.|+++|++|+| .++|
T Consensus 2 I~~~nvsk~y~~--------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I-~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYGN--------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI-LIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcCC--------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE-EECCeecccCCHHH
Confidence 789999999974 467888 99999999999999999999999999999999999999 9998
Q ss_pred ---eEEEEecCCCCC-CCcHHHHHhcCc---ccch----HHHHHHHHHhcchH--HHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 ---KKAYVPQSSWIQ-TGTIRENILFGK---DMRQ----SFYEEVLEGCALNQ--DIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 ---~iayv~Q~pwif-~gTIreNIlfG~---~~d~----~~y~~vl~ac~L~~--di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
+||||-|+.-|| +.||.|||.+-- .+++ +|.++.++..+|++ .....| ..|||||+
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQ 141 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQ 141 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchh
Confidence 589999999887 789999998642 2344 45567777788864 344555 57999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcch-hhcCCEEEEEeCCEEEEecCH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~-l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
|||.+|||+..||+|+|+|||||||||-+.+++ |+-+..+-+ +||+|+|||+++. ++-||+|.+|++|+|++.|++
T Consensus 142 QRVGv~RALAadP~ilLMDEPFgALDpI~R~~l-Q~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P 220 (309)
T COG1125 142 QRVGVARALAADPPILLMDEPFGALDPITRKQL-QEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTP 220 (309)
T ss_pred hHHHHHHHHhcCCCeEeecCCccccChhhHHHH-HHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCH
Confidence 999999999999999999999999999998877 555544332 8999999999976 688999999999999999999
Q ss_pred HHHHhhcchHHHH
Q 001505 804 EDLIADQNSELVR 816 (1065)
Q Consensus 804 ~eL~~~~~~~~~~ 816 (1065)
+|++.++..+|-+
T Consensus 221 ~~il~~Pan~FV~ 233 (309)
T COG1125 221 DEILANPANDFVE 233 (309)
T ss_pred HHHHhCccHHHHH
Confidence 9999855556644
No 56
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=349.73 Aligned_cols=188 Identities=32% Similarity=0.479 Sum_probs=163.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------e
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------K 660 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------~ 660 (1065)
.+++++++.+|+. ..+|+| ||+|++||+|+|+|||||||||||++|.|+.+|++|+| .++| .
T Consensus 3 ~l~i~~v~~~f~~--------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V-~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG--------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV-LLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc--------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCcccCCCCCC
Confidence 4789999999974 478999 99999999999999999999999999999999999999 9987 4
Q ss_pred EEEEecCCCCCC-CcHHHHHhcCccc-------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 661 KAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 661 iayv~Q~pwif~-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
++||.|++-||. -||+|||.||-+. .+++.++.++..+|..+-+..| ..||||||||+|||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiA 142 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIA 142 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHH
Confidence 799999988874 7999999998664 2346778888899987777666 47999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcch-hhcCCEEEEEeC--CEEE
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEF-LDAADLVLVMKD--GKIE 798 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~-l~~aD~Ilvl~~--G~I~ 798 (1065)
||+..+|+|+||||||||||+.|..++ ++-+..+.+ ++|+++|||+++. +--+|+|++|.+ |+|.
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~l-q~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREEL-QDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHH-HHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999998766 555555443 6999999999987 577999999998 5553
No 57
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-40 Score=356.87 Aligned_cols=215 Identities=31% Similarity=0.488 Sum_probs=192.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++. ..++++| |+++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGD------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCC------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE-EECCEEhhhCCHHH
Confidence 4689999999643 2468899 99999999999999999999999999999999999999 8877
Q ss_pred ---eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 660 ---KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 660 ---~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
.++|++|+|++++.|++||+.++.+ .+++.+.+.++.+.+.+.++.+|.|.++..+.+..+||||||||++||||+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 2899999999999999999998754 345567777888899999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHH
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~ 814 (1065)
+++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.++.||+|++|++|++++.|+.+++.. ....+
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l-~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~ 230 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLV-QAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA-QGGVY 230 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHH-HHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH-cCcch
Confidence 999999999999999999997766 567777767899999999999998999999999999999999999876 44333
No 58
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-40 Score=355.11 Aligned_cols=210 Identities=29% Similarity=0.477 Sum_probs=191.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|+.. .++++| |+++++|++++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 2 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK-------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI-LIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC-------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEeHHHcCHH
Confidence 48899999999643 468999 99999999999999999999999999999999999999 8876
Q ss_pred ----eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001505 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1065)
Q Consensus 660 ----~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARA 734 (1065)
.++|++|+++++++|++||+.++.+ ...++.++.++.+++.+.++.+|.|+++..+.+..+||||||||++||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 3899999999999999999998754 34456777888889999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 735 ly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|+|||+++.++.||+|++|++|++++.|+.+++.+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLI-QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHH-HHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999998776 456776667899999999999999999999999999999999988875
No 59
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.9e-40 Score=352.13 Aligned_cols=205 Identities=28% Similarity=0.402 Sum_probs=187.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|+.. ..++++| ||++++||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRPN------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI-LIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCCC------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhHhCCHH
Confidence 48899999999753 2468999 99999999999999999999999999999999999999 8876
Q ss_pred ----eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 660 ----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 660 ----~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
.++|++|+|.++++|++|||.+..+.++++..++++..++.+.+..+|.|++|..++++.+||||||||++||||+
T Consensus 75 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 75 DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 3899999999999999999987766667778888899999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecC
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt 802 (1065)
+++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.++.||+|++|++|++++.|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALI-QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHH-HHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999997765 566776666799999999999999999999999999998875
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.5e-39 Score=354.35 Aligned_cols=218 Identities=31% Similarity=0.475 Sum_probs=192.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|+++.|++. ...++++| ||++++||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~i~~l~~~~~~~-----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSR-----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI-LLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCC-----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE-EECCEehhhcCHHH
Confidence 4689999999753 23468999 99999999999999999999999999999999999999 8877
Q ss_pred ---eEEEEecCCCCCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 660 ---KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 660 ---~iayv~Q~pwif~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
.++|++|+|++++.|++|||.++.+. ..++.++.++.+++.+.++.+|.|.++..+....+||||||||++||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 38999999999999999999987543 34556677888888888999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHHH
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1065)
+++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.++.||+|++|++|++++.|+.+++.. ......
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~ 232 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLV-QEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYA 232 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHH-HHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh-cChhHH
Confidence 999999999999999999998766 456666557899999999999999999999999999999999988876 443333
Q ss_pred H
Q 001505 816 R 816 (1065)
Q Consensus 816 ~ 816 (1065)
+
T Consensus 233 ~ 233 (238)
T cd03249 233 K 233 (238)
T ss_pred H
Confidence 3
No 61
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-40 Score=351.56 Aligned_cols=204 Identities=27% Similarity=0.388 Sum_probs=172.5
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|+++.|... .+.....++| ||+|++||..+|+|.||+|||||+++|-++-.|++|+| .++|
T Consensus 2 I~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v-~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV-FVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE-EEcCEecccCChHH
Confidence 7899999999863 0123457888 99999999999999999999999999999999999999 9998
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCccc----chHHHHHHHHHh---cchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM----RQSFYEEVLEGC---ALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~~----d~~~y~~vl~ac---~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+|++++|++-|++ .|+.|||.|.-+. .++..++|.+.+ +|.+- -+....+|||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQ 146 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQ 146 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcch
Confidence 4899999999997 8999999997542 334455565555 44332 233457999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecC
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt 802 (1065)
||||+||||+..+|+|+|.|||||||||+|.+.|.+ +++.+- -|-|+++|||.++.++. ||+|.||++|+|+|+|+
T Consensus 147 KQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~ 225 (339)
T COG1135 147 KQRVAIARALANNPKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225 (339)
T ss_pred hhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEecc
Confidence 999999999999999999999999999999999875 454432 37899999999999976 99999999999999999
Q ss_pred HHHHHhhc
Q 001505 803 YEDLIADQ 810 (1065)
Q Consensus 803 ~~eL~~~~ 810 (1065)
-.|+..++
T Consensus 226 v~~vF~~P 233 (339)
T COG1135 226 VSEVFANP 233 (339)
T ss_pred HHHhhcCc
Confidence 99998743
No 62
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=361.60 Aligned_cols=201 Identities=31% Similarity=0.430 Sum_probs=175.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.|+++|++.+|++. . ++++ |++|++||+++++|||||||||||++|.|+.+|++|+| .++|
T Consensus 3 ~i~l~~v~K~yg~~-------~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSF-------E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEcCCc-------e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChh
Confidence 58999999999754 2 8999 99999999999999999999999999999999999999 9998
Q ss_pred --eEEEEecCCCCC-CCcHHHHHhcCcccc-------hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWIQ-TGTIRENILFGKDMR-------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwif-~gTIreNIlfG~~~d-------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.||+|+|+.-|+ +.||+|||.||..+. +++.++|.+..+|++.++..| ..|||||||||
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRV 142 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRV 142 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHH
Confidence 489999999987 569999999996542 467778888888888887766 57999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcch-hhcCCEEEEEeCCEEEEecCHHHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~-l~~aD~Ilvl~~G~I~e~Gt~~eL 806 (1065)
|||||+.++|+++|||||+|+||++....+-. -|+.+-+ +.|+|+|||+... ..-||+|.||++|+|.|.|++.|+
T Consensus 143 AlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~-ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 143 ALARALVRKPKVFLLDEPLSNLDAKLRVLMRS-EIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred HHHHHHhcCCCEEEecCchhHhhHHHHHHHHH-HHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 99999999999999999999999999766533 3544432 6899999998655 577999999999999999999999
Q ss_pred Hhhcc
Q 001505 807 IADQN 811 (1065)
Q Consensus 807 ~~~~~ 811 (1065)
..++.
T Consensus 222 y~~P~ 226 (338)
T COG3839 222 YERPA 226 (338)
T ss_pred hhCcc
Confidence 97443
No 63
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=6.1e-39 Score=345.38 Aligned_cols=204 Identities=33% Similarity=0.523 Sum_probs=183.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|+++.|+.. ..++++| |+++++|++++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 2 ~l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPNQ------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE-EECCEEhHHCCHH
Confidence 48899999999643 2468999 99999999999999999999999999999999999999 8887
Q ss_pred ----eEEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001505 660 ----KKAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1065)
Q Consensus 660 ----~iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARA 734 (1065)
.++|++|+|++++.|++||+.++.+ .++++.++.++.+++.+.++.+|.|++|.+.++..+||||||||++||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 75 DLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 3899999999999999999988754 34556778889999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEec
Q 001505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 735 ly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~G 801 (1065)
+.++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERL-KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHH-HHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999998766 45677665568999999999999889999999999998764
No 64
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2e-39 Score=370.68 Aligned_cols=191 Identities=29% Similarity=0.409 Sum_probs=159.7
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-----------------eEEEEecCCCCCC
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQT 672 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-----------------~iayv~Q~pwif~ 672 (1065)
...++| ||+|++||+++|+||||||||||+++|.|+++|++|+| .++| .++||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 457888 99999999999999999999999999999999999999 8877 4899999999997
Q ss_pred -CcHHHHHhcCccc---c-hHHHHH---HHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001505 673 -GTIRENILFGKDM---R-QSFYEE---VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1065)
Q Consensus 673 -gTIreNIlfG~~~---d-~~~y~~---vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLL 744 (1065)
.||+|||.|+.++ + +++.++ +++..+|+. .......+|||||||||+||||++++|+|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~-----------~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-----------YEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5999999987543 2 233334 444444433 34555668999999999999999999999999
Q ss_pred eCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHHHHhhcchHH
Q 001505 745 DDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1065)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~ 814 (1065)
||||||||+++.+.+.+. +..+. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++|++++...+|
T Consensus 154 DEP~saLD~~~r~~l~~~-l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDE-LKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred eCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 999999999999888665 44432 389999999999975 6699999999999999999999987333333
No 65
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=329.97 Aligned_cols=203 Identities=24% Similarity=0.367 Sum_probs=178.4
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCC-----CcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~-----G~i~~v~g--- 659 (1065)
..++++|+++.|.. +.+|+| |++|++++.+|++|||||||||||+++-+..+..+ |+| .++|
T Consensus 6 ~~~~~~~l~~yYg~--------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v-~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYYGD--------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV-LLDGKNI 76 (253)
T ss_pred ceeEecceeEEECc--------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE-EECCeec
Confidence 46899999999974 468999 99999999999999999999999999999888776 777 7776
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCccc----c---hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~----d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
+||.|.|.|--|..||.|||.||-.. + ++..++.++.++|.+.+.. .+.+.+..
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~ 149 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALG 149 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccC
Confidence 48999999999999999999999532 1 2456777888888766542 24567889
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchh-hcCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e 799 (1065)
|||||+||++||||+.-+|+|+|||||||||||....+| ++.|.++.++-|+|+|||+++-. +-+|+...|-+|+++|
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999999999999999999999999999999999988776 88888888889999999999875 5589999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+-+++..
T Consensus 229 ~g~T~~iF~ 237 (253)
T COG1117 229 FGPTDKIFT 237 (253)
T ss_pred EcCHHhhhc
Confidence 999998886
No 66
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-39 Score=320.60 Aligned_cols=196 Identities=26% Similarity=0.402 Sum_probs=171.1
Q ss_pred EEEeeeEEEecccccccCCCcccccCCeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~---------- 660 (1065)
+.++++.|+|+.. .+.-+++|++||+|||+|||||||||||++|.|+..|.+|+| .++|.
T Consensus 2 l~L~~V~~~y~~~---------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i-~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHL---------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI-LINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCcc---------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE-EEcCeecCcCCcccC
Confidence 4567899999643 122268999999999999999999999999999999999999 99983
Q ss_pred -EEEEecCCCCC-CCcHHHHHhcCcc-------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHH
Q 001505 661 -KAYVPQSSWIQ-TGTIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1065)
Q Consensus 661 -iayv~Q~pwif-~gTIreNIlfG~~-------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaL 731 (1065)
++.+.|+.-+| .-||++||-+|.. .++++.+.++...+|....+.||. .||||||||+||
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvAL 140 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVAL 140 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHH
Confidence 79999999999 5799999999953 356788889999999999999984 799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 732 ARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
||++.++.+|+||||||||||+.-..... ..+.++. ++.|+++|||+++-+ ..+|+++++++|+|.++|+-+|+..
T Consensus 141 ARclvR~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 141 ARCLVREQPILLLDEPFSALDPALRAEML-ALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHHHhccCCeEEecCchhhcCHHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999999999999999876553 3444443 578999999999886 5599999999999999999999986
No 67
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=346.31 Aligned_cols=438 Identities=18% Similarity=0.209 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCC--ChHH------HHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 001505 339 YFGANRIGIRVRSALTVLIYKRSMAIKFAGP--SSGI------IINMINVDVERIGDFFLY-IHRIWLLPVQVFLALVIL 409 (1065)
Q Consensus 339 ~~~~~r~~~~iR~~L~~~iy~K~L~ls~~~~--~~G~------ivnlms~D~~~i~~~~~~-~~~~w~~pl~i~~al~lL 409 (1065)
.|..+++..+.|.-|...+.+|=++-....+ ..|+ .=.+++.|+..+.+.... ...+..+.++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999887554333 3322 235788888877665432 334444555555556677
Q ss_pred HHHhhhHHH---------HHHH--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH
Q 001505 410 YKNLGAAPA---------FAAL--FSTIFVMV----SNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQ 474 (1065)
Q Consensus 410 ~~~lg~~~~---------l~~l--~~~~l~~~----~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~ 474 (1065)
|...| ..+ +.+. .++++.++ +...++|...+...+..+....--.....+..+...|-+|+-|+
T Consensus 187 w~lsg-~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 187 WSLSG-GLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHccC-cceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcH
Confidence 74444 111 1111 11122222 22334444433333333332222234557788889999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 001505 475 EFLKKLLRLREIERDSLKKYL----YTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLP 550 (1065)
Q Consensus 475 ~f~~~i~~~R~~E~~~l~~~~----~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~ 550 (1065)
.-++++++.-..=++..++.. ....+.....+++++ ++. ...+-.+..+.++.|.+..+...|+.+...++.+.
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v-~P~-li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi 343 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVV-LPI-LIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFI 343 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHH-HHH-HhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665543222222111111 111111122222221 111 11222346788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccC--C-CCCCCCCCC------CCCCccEEEeeeEEEecccccccCCCcccccC-CeEe
Q 001505 551 ELISMIAQTKVSLYRIQEFIKEDN--Q-KKPITEPTS------KASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKI 620 (1065)
Q Consensus 551 ~~i~~~~~a~vs~~RI~~fL~~~e--~-~~~~~~~~~------~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i 620 (1065)
+.+..+.+=++++.|+.+|-+.-+ + ++.....+. ...+..|+++|++..-|+. .+.+++ |+.+
T Consensus 344 ~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-------~~ll~~l~~~v 416 (604)
T COG4178 344 DNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-------QTLLSELNFEV 416 (604)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-------Ceeeccceeee
Confidence 999999999999999999985332 1 111000000 1114679999999988765 477888 9999
Q ss_pred eCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC-C-eEEEEecCCCCCCCcHHHHHhcCcc---cchHHHHHHHH
Q 001505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G-KKAYVPQSSWIQTGTIRENILFGKD---MRQSFYEEVLE 695 (1065)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~-g-~iayv~Q~pwif~gTIreNIlfG~~---~d~~~y~~vl~ 695 (1065)
++||.+.|.|++|||||||+++|.|..|--+|+| ... + .+-|+||.|++..||+||-|++..+ ++++.+.++++
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I-~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~ 495 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRI-SMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLH 495 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCce-ecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHH
Confidence 9999999999999999999999999999999998 664 3 4899999999999999999999753 67899999999
Q ss_pred HhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEE
Q 001505 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLY 775 (1065)
Q Consensus 696 ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIl 775 (1065)
.|+|.+-.+.+.+-++ =..-||||||||++.||.++++|++++|||+|||||+.++..+++ .+++.+.+.|+|-
T Consensus 496 ~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvIS 569 (604)
T COG4178 496 KVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVIS 569 (604)
T ss_pred HcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEE
Confidence 9999999998865443 567899999999999999999999999999999999999988764 6788889999999
Q ss_pred EcCCcchhhcCCEEEEEe
Q 001505 776 TTHQLEFLDAADLVLVMK 793 (1065)
Q Consensus 776 VTH~l~~l~~aD~Ilvl~ 793 (1065)
|.||.......++.+-++
T Consensus 570 V~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 570 VGHRPTLWNFHSRQLELL 587 (604)
T ss_pred eccchhhHHHHhhheeec
Confidence 999999888887776664
No 68
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-39 Score=360.66 Aligned_cols=205 Identities=33% Similarity=0.446 Sum_probs=177.7
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------- 660 (1065)
..++++|++.+|.+ ..+++| ||+|++||++++.|||||||||||++|.|+..|++|+| .++|+
T Consensus 4 ~~l~i~~v~k~yg~--------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I-~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFGD--------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI-LLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecCC--------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCh
Confidence 46999999999973 478999 99999999999999999999999999999999999999 99984
Q ss_pred ----EEEEecCCCCC-CCcHHHHHhcCccc-----ch---HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHH
Q 001505 661 ----KAYVPQSSWIQ-TGTIRENILFGKDM-----RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1065)
Q Consensus 661 ----iayv~Q~pwif-~gTIreNIlfG~~~-----d~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQ 727 (1065)
|++|.|+--|| +.||+|||.||..+ ++ ++.+++++..+|.+.-+.. ...|||||+|
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----------p~qLSGGQqQ 143 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-----------PHQLSGGQQQ 143 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC-----------hhhhChHHHH
Confidence 89999999888 68999999999652 12 3777888888887654444 4689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcc-hhhcCCEEEEEeCCEEEEecCHH
Q 001505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLE-FLDAADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 728 RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~-~l~~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
|+||||||..+|+++|||||+||||.+..+++-.+ ++.+.+ +.|.|+|||+-+ .+..+|+|.||++|+|.+.|+++
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~E-lk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPE 222 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHH
Confidence 99999999999999999999999999998876444 444332 899999999875 48899999999999999999999
Q ss_pred HHHhhcchHH
Q 001505 805 DLIADQNSEL 814 (1065)
Q Consensus 805 eL~~~~~~~~ 814 (1065)
|+..++...|
T Consensus 223 eiY~~P~~~f 232 (352)
T COG3842 223 EIYERPATRF 232 (352)
T ss_pred HHhhCcchHH
Confidence 9997554444
No 69
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=364.00 Aligned_cols=202 Identities=27% Similarity=0.395 Sum_probs=173.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|+.+ ...|+| ||++++||+++|+|||||||||||++|.|+.+|++|+| .++|
T Consensus 3 ~l~i~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGK-------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCCC-------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 38899999999532 468999 99999999999999999999999999999999999999 8888
Q ss_pred --eEEEEecCCCCC-CCcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwif-~gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.|+||+|++.+| +.|++|||.|+... + +++.+++++..+|.+.....| .+||||||||+
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRv 143 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRV 143 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHH
Confidence 389999999999 57999999997532 2 234566777777766554444 58999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~eL 806 (1065)
+||||++++|+++|||||||+||+.+.+.+.+ .++.+.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRL-EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999999887754 4655543 78999999999875 56999999999999999999999
Q ss_pred Hhhcc
Q 001505 807 IADQN 811 (1065)
Q Consensus 807 ~~~~~ 811 (1065)
.++..
T Consensus 223 ~~~p~ 227 (356)
T PRK11650 223 YEKPA 227 (356)
T ss_pred HhCCc
Confidence 87333
No 70
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-38 Score=357.70 Aligned_cols=206 Identities=27% Similarity=0.439 Sum_probs=170.3
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------- 659 (1065)
+..|+++|++|+|+... ....++|+| |++|++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 19 ~~~l~~~nl~~~y~~~~---~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I-~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQ---ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI-QVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCC---cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCEEccccc
Confidence 35699999999997430 012468999 99999999999999999999999999999999999999 7764
Q ss_pred ----------------------eEEEEecCC--CCCCCcHHHHHhcCcc---cchH----HHHHHHHHhcchHHHHhhcC
Q 001505 660 ----------------------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWAD 708 (1065)
Q Consensus 660 ----------------------~iayv~Q~p--wif~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~ 708 (1065)
+++||+|+| ++|+.|++|||.||.. .+++ +.++.++.++|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------- 167 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD------- 167 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-------
Confidence 279999998 8999999999999842 1222 2223333333321
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcC
Q 001505 709 GDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAA 786 (1065)
Q Consensus 709 Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~a 786 (1065)
...++++.+||||||||++||||+.++|+|+|||||||+||+.+.+.+. +.++.+. +++|+|+|||+++.+ ..|
T Consensus 168 ---~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~g~TiiivtHd~~~~~~~a 243 (320)
T PRK13631 168 ---SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVA 243 (320)
T ss_pred ---hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 2356778899999999999999999999999999999999999987765 5665543 589999999999986 569
Q ss_pred CEEEEEeCCEEEEecCHHHHHh
Q 001505 787 DLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 787 D~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
|+|++|++|+|++.|+++++..
T Consensus 244 dri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 244 DEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred CEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999976
No 71
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-38 Score=342.22 Aligned_cols=198 Identities=31% Similarity=0.456 Sum_probs=172.3
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++|+|++ +++++| ||++++||+++|+||+||||||||++|.|.++|.+|+| .++|
T Consensus 2 ~L~~~~ls~~y~~--------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGYGG--------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-LLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEECC--------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCCchhhcCHH
Confidence 3789999999974 579999 99999999999999999999999999999999999999 9999
Q ss_pred ----eEEEEecCC-CCCCCcHHHHHhcCcc-c----------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 ----KKAYVPQSS-WIQTGTIRENILFGKD-M----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 ----~iayv~Q~p-wif~gTIreNIlfG~~-~----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
++|||||++ --+.-||+|=+.+|+- + |++..+++++.+++.+..+. .-..|||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSG 141 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSG 141 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccCh
Confidence 599999996 4568899999999952 1 34456667888887654322 2347999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcch-hhcCCEEEEEeCCEEEEe
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQS 800 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~-l~~aD~Ilvl~~G~I~e~ 800 (1065)
|||||+.||||+.++|+|+|||||||+||.+..-.+++ .++.+- +++|+|+|+|+++. +..||++++|++|+|+.+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~ 220 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ 220 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee
Confidence 99999999999999999999999999999999888865 455544 47999999999977 688999999999999999
Q ss_pred cCHHHHHh
Q 001505 801 GKYEDLIA 808 (1065)
Q Consensus 801 Gt~~eL~~ 808 (1065)
|+++|.+.
T Consensus 221 G~p~evlT 228 (258)
T COG1120 221 GTPEEVLT 228 (258)
T ss_pred cCcchhcC
Confidence 99999986
No 72
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-38 Score=338.58 Aligned_cols=198 Identities=33% Similarity=0.518 Sum_probs=171.0
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..|+++|++|+|+++ ++|+| |+++++|++++|+||+|||||||+++|+|.++|.+|+| .+.|
T Consensus 3 ~~i~v~nl~v~y~~~--------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i-~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGNR--------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI-KIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECCE--------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE-EEcccccccccc
Confidence 359999999999742 59999 99999999999999999999999999999999999999 8765
Q ss_pred --eEEEEecC---CCCCCCcHHHHHhcCccc-----------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 --KKAYVPQS---SWIQTGTIRENILFGKDM-----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 --~iayv~Q~---pwif~gTIreNIlfG~~~-----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
+||||||. .|=|..||+|=+..|... |.++.+++++..++.+. . +-.|| .|||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-~------~r~i~----~LSG 142 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-R------DRQIG----ELSG 142 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-h------CCccc----ccCc
Confidence 59999995 488999999999998422 34778888998888743 2 12344 5999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEec
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~G 801 (1065)
||+||+-|||||.++||+++|||||++||++++..++ +.|..+.+ |+||++|||+++.+ .++|+|+.|+ +++...|
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~-~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY-DLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEecc
Confidence 9999999999999999999999999999999988765 56666543 89999999999986 5599999995 6788999
Q ss_pred CHHHHHh
Q 001505 802 KYEDLIA 808 (1065)
Q Consensus 802 t~~eL~~ 808 (1065)
+.+|..+
T Consensus 221 ~~~~~~~ 227 (254)
T COG1121 221 PPEEVLT 227 (254)
T ss_pred ChhhccC
Confidence 9999886
No 73
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.9e-38 Score=339.72 Aligned_cols=197 Identities=40% Similarity=0.746 Sum_probs=177.6
Q ss_pred EEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-----------
Q 001505 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1065)
Q Consensus 592 ~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g----------- 659 (1065)
.+.|+.|+|+.+ .++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 ~~~~~~~~~~~~-------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG-------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV-HWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC-------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE-EECCccccccccccc
Confidence 567999999854 468999 99999999999999999999999999999999999998 7754
Q ss_pred ------eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHH
Q 001505 660 ------KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1065)
Q Consensus 660 ------~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLAR 733 (1065)
.++|++|+|.+++.|++|||.++.++++++.+++++++++.+.++.+|.|++|.++....+||||||||++|||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 38999999999999999999998766667778899999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHhHHHHHHHH-HHhhhc-CCcEEEEEcCCcchhhcCCEEEEEeCCE
Q 001505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQ-CLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1065)
Q Consensus 734 Aly~~adIlLLDDp~SALD~~t~~~if~~-~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl~~G~ 796 (1065)
|++++|+++||||||++||+++.+.+.+. .++.+. +++|+|++||+.+.++.||+|++|++|+
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999998877653 444333 3689999999999999999999999984
No 74
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.7e-38 Score=359.39 Aligned_cols=201 Identities=25% Similarity=0.360 Sum_probs=169.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|+... ...++|+| ||+|++||.++|+|++|||||||+++|.|+.+|++|+| .++|
T Consensus 2 I~~~~lsk~y~~~~----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQGT----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCCC----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHH
Confidence 78999999997420 12468999 99999999999999999999999999999999999999 8876
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+|+|++|++.++. .|++|||.|+.. .+ +++..++++..+|.+... .....|||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGq 145 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHH
Confidence 3899999999985 799999998642 22 233445566666654332 3456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecC
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt 802 (1065)
|||++||||+.++|+++||||||||||+.+.+.+. +.++.+.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~-~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSIL-ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999988775 45666543 7899999999999855 99999999999999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
++++..
T Consensus 225 ~~~v~~ 230 (343)
T TIGR02314 225 VSEIFS 230 (343)
T ss_pred HHHHHc
Confidence 999986
No 75
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-39 Score=340.99 Aligned_cols=204 Identities=33% Similarity=0.474 Sum_probs=173.0
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.|.++|++..|+. .+.+.| +++|+.||.+|+.|||||||||||++|.|+..|++|.| .++|
T Consensus 2 ~i~i~~~~~~~~~--------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I-~~~~~~l~D~~~~ 72 (345)
T COG1118 2 SIRINNVKKRFGA--------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLNGRVLFDVSNL 72 (345)
T ss_pred ceeehhhhhhccc--------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE-EECCEeccchhcc
Confidence 3677788887764 357778 99999999999999999999999999999999999999 8888
Q ss_pred -----eEEEEecCCCCC-CCcHHHHHhcCccc---------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 -----KKAYVPQSSWIQ-TGTIRENILFGKDM---------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 -----~iayv~Q~pwif-~gTIreNIlfG~~~---------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
+||||.|+.-+| +.||.|||.||.+. .+.+.++.++.|+|+..-+.-| ..||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGG 141 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGG 141 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChH
Confidence 389999998876 78999999999732 3456778889998875444433 689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcch-hhcCCEEEEEeCCEEEEec
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~-l~~aD~Ilvl~~G~I~e~G 801 (1065)
||||||||||+..+|+++||||||+|||++..+.+ ++-++.+.. +.|+++|||+.+. +..||+|++|+||+|.+.|
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~l-r~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg 220 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL-RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHH-HHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeC
Confidence 99999999999999999999999999999997765 444544432 7899999999976 6789999999999999999
Q ss_pred CHHHHHhhcchHH
Q 001505 802 KYEDLIADQNSEL 814 (1065)
Q Consensus 802 t~~eL~~~~~~~~ 814 (1065)
+++|....++..|
T Consensus 221 ~p~ev~~~P~s~f 233 (345)
T COG1118 221 PPDEVYDHPASRF 233 (345)
T ss_pred CHHHHhcCCCccc
Confidence 9999987444443
No 76
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.9e-38 Score=331.96 Aligned_cols=193 Identities=32% Similarity=0.444 Sum_probs=160.4
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++..|.... ....+|++ ||+|++||++||+|||||||||||++|-|.-.|++|.| .++|
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v-~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV-LINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE-EECCEEcCcCCHHH
Confidence 56889999887541 12468999 99999999999999999999999999999999999998 8888
Q ss_pred -------eEEEEecCCCC-CCCcHHHHHhcC----ccc---chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 -------KKAYVPQSSWI-QTGTIRENILFG----KDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 -------~iayv~Q~pwi-f~gTIreNIlfG----~~~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
+||||.|+..| .+-|++|||.+. ... .+++.++.++..+|.+... ..+...||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGG 146 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGG 146 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHH
Confidence 38999999876 578999999852 222 2345556666666665443 1234689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh--cCCcEEEEEcCCcchhhcCCEEEEEeCCEEEE
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l--l~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e 799 (1065)
||||||||||+..+|+|+|.||||++||.++++.+++ .+..+ ..++|+|+|||+......||+++.|+||++.+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~-ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE-LLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999998875 45554 34789999999999999999999999999654
No 77
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-38 Score=343.28 Aligned_cols=197 Identities=28% Similarity=0.399 Sum_probs=165.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .++++| |+++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG--------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV-LIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccChhh
Confidence 468999999963 358999 99999999999999999999999999999999999998 8766
Q ss_pred ------eEEEEecCCCCCCC-cHHHHHhcCcc----cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 ------KKAYVPQSSWIQTG-TIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 ------~iayv~Q~pwif~g-TIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
.++||+|++.+++. |++||+.++.. .++ ++..++++.++|.+.. .....+||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG 140 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGG 140 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHH
Confidence 27999999999875 99999987632 122 2344555555554332 2334589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
||||++||||+.++|+++||||||++||+++.+.+. +.++.+.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVID-DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 999999999999999999999999999999987764 56666543 789999999999876 49999999999999999
Q ss_pred CHHHHHh
Q 001505 802 KYEDLIA 808 (1065)
Q Consensus 802 t~~eL~~ 808 (1065)
+++++.+
T Consensus 220 ~~~~~~~ 226 (235)
T cd03261 220 TPEELRA 226 (235)
T ss_pred CHHHHcC
Confidence 9999875
No 78
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-38 Score=358.48 Aligned_cols=202 Identities=27% Similarity=0.370 Sum_probs=171.4
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..|+++|++++|++ ...++| |+++++||+++|+||+|||||||+++|.|+.+|++|+| .++|
T Consensus 5 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~ 75 (351)
T PRK11432 5 NFVVLKNITKRFGS--------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-FIDGEDVTHRSI 75 (351)
T ss_pred cEEEEEeEEEEECC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCH
Confidence 36899999999963 357899 99999999999999999999999999999999999999 8887
Q ss_pred ---eEEEEecCCCCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH
Q 001505 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1065)
Q Consensus 660 ---~iayv~Q~pwif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR 728 (1065)
.++||+|++.+|. .|++|||.||... + +++.+++++..+|.+.. ......||||||||
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-----------~r~~~~LSgGq~QR 144 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-----------DRYVDQISGGQQQR 144 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHH
Confidence 4899999999995 6999999997431 2 23445555555654332 23356899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHH
Q 001505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 729 IaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
++||||++++|+++|||||||+||+.+.+.+ .+.++.+.+ ++|+|+|||+.+.+ ..||+|++|++|+|++.|+++|
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l-~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSM-REKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999998876 456666654 79999999999986 5699999999999999999999
Q ss_pred HHhhcc
Q 001505 806 LIADQN 811 (1065)
Q Consensus 806 L~~~~~ 811 (1065)
+.+++.
T Consensus 224 ~~~~p~ 229 (351)
T PRK11432 224 LYRQPA 229 (351)
T ss_pred HHhCCC
Confidence 986433
No 79
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.6e-38 Score=324.06 Aligned_cols=210 Identities=28% Similarity=0.427 Sum_probs=180.7
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------- 659 (1065)
...|+++++++++.+ ..+++| ||+|++||.++|+|+||||||||+++|+|+.+|++|+| .++|
T Consensus 6 ~~~I~vr~v~~~fG~--------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI-~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGD--------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI-LIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCC--------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE-EEcCcchhccC
Confidence 457999999999964 478888 99999999999999999999999999999999999999 9988
Q ss_pred ---------eEEEEecCCCCCC-CcHHHHHhcCc----ccchHHHHH----HHHHhcchHH-HHhhcCCCCccccCCCCC
Q 001505 660 ---------KKAYVPQSSWIQT-GTIRENILFGK----DMRQSFYEE----VLEGCALNQD-IEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 ---------~iayv~Q~pwif~-gTIreNIlfG~----~~d~~~y~~----vl~ac~L~~d-i~~Lp~Gd~T~IGe~G~n 720 (1065)
+++++.|+.-||+ -||+||+.|-- ..+++.+++ -+++++|..+ .+.+| ..
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sE 145 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SE 145 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hh
Confidence 4899999999996 59999999942 234444443 4678888877 66776 47
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
||||.+.|+|||||+..||+|+++|||||+|||.++. .|++.|+.+.+ +-|+|+|||+++.+. -||+|+++.||+|
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~-~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHH-HHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 9999999999999999999999999999999999975 56888876544 789999999998865 5899999999999
Q ss_pred EEecCHHHHHhhcchHHHHHH
Q 001505 798 EQSGKYEDLIADQNSELVRQM 818 (1065)
Q Consensus 798 ~e~Gt~~eL~~~~~~~~~~l~ 818 (1065)
...|+++|+.+..+....+++
T Consensus 225 ~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 225 IAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred EEeCCHHHHHhCCCHHHHHHh
Confidence 999999999984444444444
No 80
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.2e-38 Score=340.49 Aligned_cols=197 Identities=27% Similarity=0.392 Sum_probs=165.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc-----cCCCCcEEEECC-----
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-----PRISGAAIKVHG----- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~-----~~~~G~i~~v~g----- 659 (1065)
|+++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|.+ +|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD--------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV-LLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE-EECCEEhhh
Confidence 468999999964 368999 9999999999999999999999999999999 9999998 8876
Q ss_pred ----------eEEEEecCCCCCCCcHHHHHhcCccc----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ----------~iayv~Q~pwif~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|++.+++.|++||+.++... + +++.+++++..++.+.+...++ +.+|
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~L 142 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGL 142 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccC
Confidence 37999999999999999999886421 1 2344566666666544433221 5789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEe
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~ 800 (1065)
|||||||++||||++++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|++++.
T Consensus 143 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIE-ELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999987764 56766655589999999999875 5999999999999999
Q ss_pred cCHHHH
Q 001505 801 GKYEDL 806 (1065)
Q Consensus 801 Gt~~eL 806 (1065)
|+.+|+
T Consensus 222 g~~~~~ 227 (227)
T cd03260 222 GPTEQI 227 (227)
T ss_pred cCcccC
Confidence 987653
No 81
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=340.80 Aligned_cols=202 Identities=22% Similarity=0.351 Sum_probs=173.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc---CCCCcEEEECC------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~---~~~G~i~~v~g------ 659 (1065)
.|+++|+++.|+. .+.++| |+++++||.++|+|++|||||||+++|.|+++ |.+|+| .++|
T Consensus 2 ~~~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i-~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFYGK--------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV-EIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEECC--------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE-EECCEecccC
Confidence 4789999999963 368999 99999999999999999999999999999974 689999 8877
Q ss_pred -------eEEEEecCCCCCCCcHHHHHhcCccc---------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 -------KKAYVPQSSWIQTGTIRENILFGKDM---------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 -------~iayv~Q~pwif~gTIreNIlfG~~~---------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
.++|++|+|.+|+.|++|||.++... ++++.+++++.++|.+.++.+ ..+++.+|||
T Consensus 73 ~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~ 145 (246)
T PRK14269 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSG 145 (246)
T ss_pred CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCH
Confidence 38999999999999999999876321 123456777888876655432 4556789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecC
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt 802 (1065)
|||||++||||++++|+++||||||++||+++...+ .++++.+.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l-~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI-EELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence 999999999999999999999999999999997665 567777667899999999999875 699999999999999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
.+|+.+
T Consensus 225 ~~~~~~ 230 (246)
T PRK14269 225 SKEFFE 230 (246)
T ss_pred HHHHHh
Confidence 999875
No 82
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=347.47 Aligned_cols=201 Identities=28% Similarity=0.420 Sum_probs=172.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|+.. ...++|+| |++|++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKED-----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI-IIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCC-----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 48999999999753 22458999 99999999999999999999999999999999999999 8887
Q ss_pred ----eEEEEecCCC--CCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 ----~iayv~Q~pw--if~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
+++||+|+|. ++..||+|||.|+.. ++ +++.+++++..+|.+..+.. ..+||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~ 146 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQK 146 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHH
Confidence 3799999984 677899999998742 22 24566777777776544433 368999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
||++||||++++|+++||||||++||+.+.+.+. +.++.+.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPR 225 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999877664 56766643 79999999999998889999999999999999999
Q ss_pred HHHh
Q 001505 805 DLIA 808 (1065)
Q Consensus 805 eL~~ 808 (1065)
++.+
T Consensus 226 ~~~~ 229 (279)
T PRK13650 226 ELFS 229 (279)
T ss_pred HHHc
Confidence 9876
No 83
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-37 Score=330.80 Aligned_cols=188 Identities=25% Similarity=0.401 Sum_probs=163.3
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
+.++++|++++|+.. ..++++| |+++++||.++|+|++|||||||+++|+|+++|.+|+| .++|
T Consensus 5 ~~l~~~~l~~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPD------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI-EIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCC------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEhHHCCH
Confidence 569999999999753 2468999 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001505 660 -----KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1065)
Q Consensus 660 -----~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARA 734 (1065)
.++||+|+|.++++|++|||.+..++++++. .+++. ++++..+||||||||++||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~---~~~l~---------------~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEI---YGALR---------------VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHH---HHHhh---------------ccCCCCcCCHHHHHHHHHHHH
Confidence 4899999999999999999987654443332 22221 356788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecC
Q 001505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 735 ly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt 802 (1065)
++++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 140 l~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 140 LLKRPRVLVLDEATASIDYATDALI-QKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHH-HHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999997765 456766666899999999999998899999999999998876
No 84
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-37 Score=336.44 Aligned_cols=203 Identities=30% Similarity=0.455 Sum_probs=177.3
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------- 659 (1065)
.+.++++|++++|++. ...+++++ |++|++|++++|+||+|||||||+++|.|+.+|.+|+| .++|
T Consensus 9 ~~~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV-LLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCCC-----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-EECCCchHHcC
Confidence 4579999999999753 22468999 99999999999999999999999999999999999998 8877
Q ss_pred ------eEEEEecCCCCCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 660 ------KKAYVPQSSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 660 ------~iayv~Q~pwif~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
.++|++|+|.+++.|++||+.++... +..++.+..+...+++.++.+|.|.++.+.++..+||||||||++||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 38999999999999999999987542 22233344445567788999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEE
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I 797 (1065)
||++++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.+..||+|++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQV-QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999998766 5567766667899999999999988999999999975
No 85
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-38 Score=336.22 Aligned_cols=199 Identities=32% Similarity=0.486 Sum_probs=177.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++|+|+++ .+++++ |++|++||.++|+|++|||||||++.+.|.++|++|.| .++|
T Consensus 3 ~i~~~~l~~~y~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPGR-------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCCC-------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhH
Confidence 47899999999864 588999 99999999999999999999999999999999999999 8877
Q ss_pred -----eEEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -----~iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+++||.|+| .+|..||.|.|.||.. .+ +++.+++++.|++.+..+.-| .+|||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGq 143 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQ 143 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcc
Confidence 389999999 8999999999999953 22 356778899999987755544 5899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecC
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt 802 (1065)
|||+|||.++..+|+++|||||||+||+...+.+.+ .++.+.+ ++|+|++||+++.+.. ||++++|++|+++.+|+
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 999999999999999999999999999999888754 5666543 5899999999999876 99999999999999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
++|+.+
T Consensus 223 p~~i~~ 228 (235)
T COG1122 223 PAEIFN 228 (235)
T ss_pred HHHHhh
Confidence 999886
No 86
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.9e-37 Score=339.81 Aligned_cols=201 Identities=26% Similarity=0.399 Sum_probs=170.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC-----CCcEEEECC-----
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG----- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~-----~G~i~~v~g----- 659 (1065)
++++|++++|+. .++++| |++|++||+++|+|++|||||||+++|.|.++|. +|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i-~~~g~~~~~ 72 (247)
T TIGR00972 2 IEIENLNLFYGE--------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV-LFDGQDIYD 72 (247)
T ss_pred EEEEEEEEEECC--------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE-EECCEEccc
Confidence 789999999964 358899 9999999999999999999999999999999988 9998 7765
Q ss_pred ----------eEEEEecCCCCCCCcHHHHHhcCccc----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ----------~iayv~Q~pwif~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|++++++.|++||+.++... + +++.+++++..+|.++++ ........+|
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 145 (247)
T TIGR00972 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGL 145 (247)
T ss_pred cccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccC
Confidence 38999999999999999999875321 1 133455566666654331 2245566799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEe
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~ 800 (1065)
|||||||++||||++++|+++||||||++||+++.+.+ .++++.+.+++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 146 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI-EELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999998766 567777666789999999999875 5999999999999999
Q ss_pred cCHHHHHh
Q 001505 801 GKYEDLIA 808 (1065)
Q Consensus 801 Gt~~eL~~ 808 (1065)
|+.+|+.+
T Consensus 225 ~~~~~~~~ 232 (247)
T TIGR00972 225 GPTEQIFT 232 (247)
T ss_pred CCHHHHHh
Confidence 99999875
No 87
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=341.15 Aligned_cols=203 Identities=24% Similarity=0.367 Sum_probs=171.8
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g--- 659 (1065)
+.|+++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|+++ |++|+| .++|
T Consensus 5 ~~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 75 (253)
T PRK14242 5 PKMEARGLSFFYGD--------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI-LLDGENI 75 (253)
T ss_pred cEEEEeeeEEEECC--------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE-EECCEEc
Confidence 45999999999963 358999 99999999999999999999999999999864 589998 7766
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCccc--------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM--------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~--------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++|++|++.+|+.|++|||.++... .+++.++.++.+++.+.+. +.......
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 148 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESAL 148 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 38999999999999999999886321 1234555666666654432 23456678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~ 798 (1065)
+||||||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.+. .||+|++|++|+|+
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI-EELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999997766 556777666789999999999885 59999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+++++.+
T Consensus 228 ~~g~~~~~~~ 237 (253)
T PRK14242 228 EVGPTEQIFT 237 (253)
T ss_pred EeCCHHHHHc
Confidence 9999999875
No 88
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-37 Score=337.72 Aligned_cols=197 Identities=32% Similarity=0.439 Sum_probs=165.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (239)
T cd03296 3 IEVRNVSKRFGD--------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI-LFGGEDATDVPVQE 73 (239)
T ss_pred EEEEeEEEEECC--------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 789999999964 368999 99999999999999999999999999999999999999 8876
Q ss_pred -eEEEEecCCCCCC-CcHHHHHhcCccc-------ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 -~iayv~Q~pwif~-gTIreNIlfG~~~-------d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++|++|+|.++. .|++|||.++... +. ++.++.++..+|.+. ......+||||||
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~ 142 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQR 142 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHH
Confidence 3899999999885 6999999986421 11 223344555554332 3344568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||++||||++++|+++||||||++||+++.+.+ .+.++.+.+ ++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 221 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKEL-RRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 999999999999999999999999999998766 456766543 789999999999865 5999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+++.+
T Consensus 222 ~~~~~ 226 (239)
T cd03296 222 DEVYD 226 (239)
T ss_pred HHHhc
Confidence 99875
No 89
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=347.46 Aligned_cols=205 Identities=25% Similarity=0.374 Sum_probs=170.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|+++.|+... ....++++| |++|++||+++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 2 ~l~~~~l~~~y~~~~---~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGT---PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCC---ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EECCEECCCcCcc
Confidence 378999999997530 001468999 99999999999999999999999999999999999999 8876
Q ss_pred ------eEEEEecCC--CCCCCcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 ------~iayv~Q~p--wif~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
+++||+|+| .+++.|++|||.|+.. .++ ++.+++++.++|.. .+........||||
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgG 148 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGG 148 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHH
Confidence 379999998 6889999999998742 222 23455666666641 12234556799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEec
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~G 801 (1065)
||||++||||+..+|+++||||||++||+++...+ .++++.+.+ ++|+|+|||+++.+ ..||+|++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEI-LNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999998776 456766643 78999999999987 469999999999999999
Q ss_pred CHHHHHh
Q 001505 802 KYEDLIA 808 (1065)
Q Consensus 802 t~~eL~~ 808 (1065)
+.+++.+
T Consensus 228 ~~~~~~~ 234 (287)
T PRK13637 228 TPREVFK 234 (287)
T ss_pred CHHHHHh
Confidence 9999875
No 90
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.7e-37 Score=357.03 Aligned_cols=202 Identities=28% Similarity=0.387 Sum_probs=173.7
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------- 660 (1065)
..++++|++++|++ ..+++| |+++++||+++|+||+||||||||++|.|+.+|++|+| .++|.
T Consensus 13 ~~L~l~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSFDG--------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEECC--------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCH
Confidence 45899999999964 357888 99999999999999999999999999999999999999 88883
Q ss_pred ----EEEEecCCCCC-CCcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH
Q 001505 661 ----KAYVPQSSWIQ-TGTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1065)
Q Consensus 661 ----iayv~Q~pwif-~gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR 728 (1065)
++||+|++.+| +.||+|||.||... + +++.+++++..+|.+.++..| .+||||||||
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QR 152 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQR 152 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHH
Confidence 89999999998 45999999997532 2 234566777777776655554 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHH
Q 001505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 729 IaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
++||||++++|+++|||||||+||+++.+.+ .+.++.+.+ ++|+|+|||+.+.+ ..||+|++|++|+|++.|++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l-~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQM-QNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999998766 456666553 78999999999875 5699999999999999999999
Q ss_pred HHhhcc
Q 001505 806 LIADQN 811 (1065)
Q Consensus 806 L~~~~~ 811 (1065)
+.+++.
T Consensus 232 i~~~p~ 237 (375)
T PRK09452 232 IYEEPK 237 (375)
T ss_pred HHhCcc
Confidence 987433
No 91
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=347.34 Aligned_cols=203 Identities=26% Similarity=0.381 Sum_probs=171.1
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++... ...++|+| |++|++||+++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 3 l~~~~l~~~y~~~~~---~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTP---FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV-TIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCc---ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 789999999975300 01468999 99999999999999999999999999999999999999 8877
Q ss_pred -------eEEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 -------~iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
+++||+|+| .+++.|++|||.|+.. .+ +++.+++++.++|.+++. ..+..+|||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSg 148 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSG 148 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCH
Confidence 279999998 6889999999998742 12 234566777777764432 234568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEe
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~ 800 (1065)
|||||++||||++++|+++||||||++||+++.+.+. +.++.+.+ ++|+|+|||+++.+. .||+|++|++|+|++.
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~-~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMM-EMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999987664 56666543 789999999999875 5999999999999999
Q ss_pred cCHHHHHh
Q 001505 801 GKYEDLIA 808 (1065)
Q Consensus 801 Gt~~eL~~ 808 (1065)
|+.+++.+
T Consensus 228 g~~~~~~~ 235 (290)
T PRK13634 228 GTPREIFA 235 (290)
T ss_pred CCHHHHhc
Confidence 99999876
No 92
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=338.53 Aligned_cols=203 Identities=26% Similarity=0.386 Sum_probs=170.1
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g--- 659 (1065)
..++++|++++|++ .++++| |++|++||+++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 76 (254)
T PRK14273 6 AIIETENLNLFYTD--------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV-IYEGKNI 76 (254)
T ss_pred ceEEEeeeEEEeCC--------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE-EECCEec
Confidence 36999999999963 358999 999999999999999999999999999999987 48998 7765
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCccc----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++|++|++.+++.|++|||.|+... + +++..++++.+++.+.++ +. ...+..
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~----~~~~~~ 149 (254)
T PRK14273 77 YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DK----LNTNAL 149 (254)
T ss_pred ccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HH----HhCCcc
Confidence 38999999999999999999986421 1 123445556665543222 22 234678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~ 798 (1065)
+||||||||++||||++++|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|+++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999987764 56776666789999999999875 59999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+++++.+
T Consensus 229 ~~g~~~~~~~ 238 (254)
T PRK14273 229 EESSTDELFF 238 (254)
T ss_pred EeCCHHHHHh
Confidence 9999999875
No 93
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.6e-37 Score=355.32 Aligned_cols=204 Identities=29% Similarity=0.377 Sum_probs=172.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ ...++| |+++++||+++|+||+|||||||+++|.|+.+|++|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I-~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA--------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI-YQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC--------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHH
Confidence 5899999999964 357889 99999999999999999999999999999999999999 9987
Q ss_pred --eEEEEecCCCCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.++||+|++-+|. .|++|||.|+... + +++.+++++..+|.+.. ..+..+||||||||+
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRv 143 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRV 143 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHH
Confidence 3899999999994 7999999997431 2 23455566666555433 345578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~eL 806 (1065)
+||||+.++|+++|||||||+||+++.+++. +.++.+.+ +.|+|+|||+.+.+ ..||+|++|++|+|++.|+++|+
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999987764 55666544 78999999999986 56999999999999999999999
Q ss_pred HhhcchHH
Q 001505 807 IADQNSEL 814 (1065)
Q Consensus 807 ~~~~~~~~ 814 (1065)
.++....|
T Consensus 223 ~~~p~~~~ 230 (353)
T TIGR03265 223 YRHPATPF 230 (353)
T ss_pred HhCCCCHH
Confidence 87443333
No 94
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-37 Score=345.19 Aligned_cols=203 Identities=27% Similarity=0.416 Sum_probs=170.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++|+|+... ....++++| |++|++||+++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 2 i~~~~v~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNS---PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCC---cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECCEECccccccc
Confidence 78999999997430 001358999 99999999999999999999999999999999999999 8877
Q ss_pred -------eEEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 -------~iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
.++||+|+| .+|+.|+.|||.|+.. .+ ++++.++++..+|.+++ ......+|||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSg 147 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSG 147 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCH
Confidence 279999998 8999999999999743 11 23456666666664332 2345679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
|||||++||||++.+|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+. .||+|++|++|+|++.|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMM-QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999987664 5666553 4799999999999874 69999999999999999
Q ss_pred CHHHHHh
Q 001505 802 KYEDLIA 808 (1065)
Q Consensus 802 t~~eL~~ 808 (1065)
+++++..
T Consensus 227 ~~~~~~~ 233 (288)
T PRK13643 227 TPSDVFQ 233 (288)
T ss_pred CHHHHHc
Confidence 9999875
No 95
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.3e-37 Score=331.91 Aligned_cols=197 Identities=25% Similarity=0.431 Sum_probs=166.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe---------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------- 660 (1065)
++++|+++.|++. +.++++| |+++++||+++|+||+|||||||+++|.|.++|++|+| .++|.
T Consensus 1 l~~~~l~~~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKG------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA-YINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCC------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccchHHH
Confidence 4689999999642 2468999 99999999999999999999999999999999999999 88773
Q ss_pred ---EEEEecCCCCC-CCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 661 ---KAYVPQSSWIQ-TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 661 ---iayv~Q~pwif-~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
++|++|++-++ +.|++||+.++.. .+ +++.+++++.++|.+.. .....+||||||||+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 142 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKL 142 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHH
Confidence 79999999888 6899999987532 11 23456667766665332 233468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL 806 (1065)
+||||+.++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999987664 56776666799999999999986 4999999999999999998875
No 96
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.2e-37 Score=354.83 Aligned_cols=201 Identities=28% Similarity=0.394 Sum_probs=172.0
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCC--CcEEEECC------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS--GAAIKVHG------ 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~--G~i~~v~g------ 659 (1065)
+.++++|++++|+. ..+++| |++|++||+++|+||+|||||||+++|.|+.+|++ |+| .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i-~~~g~~~~~~ 74 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI-AIADRDLTHA 74 (362)
T ss_pred eEEEEEEEEEEECC--------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE-EECCEECCCC
Confidence 46999999999964 358999 99999999999999999999999999999999999 999 8887
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++||+|++.+|. .|++|||.|+... + +++.+++++..+|++.....| .+||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~ 143 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQ 143 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHH
Confidence 3899999999985 5999999987431 2 235666777777765544443 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC---CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecC
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS---QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~---~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt 802 (1065)
||++||||+.++|+++|||||||+||+.+.+.+. +.++.+.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMR-EEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999987764 45655543 68999999999986 5599999999999999999
Q ss_pred HHHHHhhc
Q 001505 803 YEDLIADQ 810 (1065)
Q Consensus 803 ~~eL~~~~ 810 (1065)
++|+.++.
T Consensus 223 ~~~~~~~p 230 (362)
T TIGR03258 223 PQALYDAP 230 (362)
T ss_pred HHHHHhCc
Confidence 99998733
No 97
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-37 Score=342.89 Aligned_cols=198 Identities=29% Similarity=0.415 Sum_probs=170.4
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|+.. .++++| |++|++||+++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~-------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKDG-------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCCC-------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEECCCCCHH
Confidence 48999999999643 468999 99999999999999999999999999999999999999 8877
Q ss_pred ----eEEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 ----~iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++|++|+| .+++.|++|||.|+.. .+ +++++++++.++|.+.....| ..||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~ 144 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQK 144 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHH
Confidence 389999998 6889999999998742 22 245677778888865554444 38999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
||++||||+.++|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++.+ +.||+|++|++|++++.|+.+
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL-MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999998776 45666553 479999999999998 569999999999999999987
Q ss_pred HHH
Q 001505 805 DLI 807 (1065)
Q Consensus 805 eL~ 807 (1065)
++.
T Consensus 224 ~~~ 226 (274)
T PRK13647 224 LLT 226 (274)
T ss_pred Hhc
Confidence 643
No 98
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=355.71 Aligned_cols=198 Identities=27% Similarity=0.383 Sum_probs=169.7
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ ..+++| ||++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 3 ~l~i~~l~~~~~~--------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I-~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD--------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL-FIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHh
Confidence 4889999999964 358889 99999999999999999999999999999999999999 8877
Q ss_pred --eEEEEecCCCCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.++||+|++.+|. .|++|||.|+... + +++.+++++.++|.+..+. ...+||||||||+
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRv 142 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRV 142 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHH
Confidence 3899999999985 5999999987431 1 2345667777777544433 3358999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL 806 (1065)
+||||+.++|+++|||||||+||+++.+.+. +.++.+.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999987764 45666543 789999999998764 5999999999999999999999
Q ss_pred Hh
Q 001505 807 IA 808 (1065)
Q Consensus 807 ~~ 808 (1065)
..
T Consensus 222 ~~ 223 (369)
T PRK11000 222 YH 223 (369)
T ss_pred Hh
Confidence 86
No 99
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4e-37 Score=352.18 Aligned_cols=198 Identities=34% Similarity=0.479 Sum_probs=168.9
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ ...++| ||++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 3 L~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~~ 73 (353)
T PRK10851 3 IEIANIKKSFGR--------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEeCC--------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHHH
Confidence 789999999964 358999 99999999999999999999999999999999999999 8887
Q ss_pred -eEEEEecCCCCCC-CcHHHHHhcCccc-------c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 -~iayv~Q~pwif~-gTIreNIlfG~~~-------d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++||+|++.+|. .|++|||.|+... + +++.+++++..+|.+..+ .+...||||||
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~ 142 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQK 142 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHH
Confidence 3899999999986 6999999987431 1 234455566666644332 34468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||++||||++++|+++|||||||+||+++.+.+. +.++.+.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|++
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELR-RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999987764 56666554 68999999999986 45999999999999999999
Q ss_pred HHHHhh
Q 001505 804 EDLIAD 809 (1065)
Q Consensus 804 ~eL~~~ 809 (1065)
+|+.++
T Consensus 222 ~~i~~~ 227 (353)
T PRK10851 222 DQVWRE 227 (353)
T ss_pred HHHHhC
Confidence 999873
No 100
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.3e-37 Score=335.46 Aligned_cols=201 Identities=21% Similarity=0.341 Sum_probs=164.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .+++++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG--------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-LFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC--------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEECCCCCHHH
Confidence 468899999963 358999 99999999999999999999999999999999999998 8876
Q ss_pred ----eEEEEecCCCCCCC-cHHHHHhcCcccc-------------hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR-------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ----~iayv~Q~pwif~g-TIreNIlfG~~~d-------------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|++.++.+ |++|||.++.... .+..++ ..++-++.+ |.+.....+...|
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~L 144 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGEL 144 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhC
Confidence 28999999998876 9999998864311 111110 112223332 3334456667899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
|||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999999999999999987765 4565544 58999999999999855 99999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+++++.+
T Consensus 224 ~~~~~~~~~ 232 (236)
T cd03219 224 EGTPDEVRN 232 (236)
T ss_pred ecCHHHhcc
Confidence 999998864
No 101
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-37 Score=338.07 Aligned_cols=204 Identities=25% Similarity=0.372 Sum_probs=172.7
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC--
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g-- 659 (1065)
.+.++++|++++|++ .++++| |++|++||+++|+||+|||||||+++|.|.++ |++|+| .++|
T Consensus 11 ~~~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i-~~~g~~ 81 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI-LLDGEN 81 (260)
T ss_pred CceEEEEEEEEEeCC--------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE-EECCEE
Confidence 356999999999963 358999 99999999999999999999999999999986 479998 7765
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCcc----cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
+++|++|+|.++..|++||+.++.. .++ ++.+++++..++.+++. +...++.
T Consensus 82 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 154 (260)
T PRK10744 82 ILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSG 154 (260)
T ss_pred ccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCC
Confidence 3899999999999999999987632 222 34556666666654432 3356778
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
.+||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+. .||+|++|++|++
T Consensus 155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 233 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI-EELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGEL 233 (260)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999997766 456766656789999999999885 5999999999999
Q ss_pred EEecCHHHHHh
Q 001505 798 EQSGKYEDLIA 808 (1065)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1065)
++.|+.+++.+
T Consensus 234 ~~~g~~~~~~~ 244 (260)
T PRK10744 234 IEFGNTDTIFT 244 (260)
T ss_pred EEeCCHHHHHh
Confidence 99999999876
No 102
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.2e-37 Score=336.17 Aligned_cols=197 Identities=27% Similarity=0.382 Sum_probs=165.0
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|+.+ .++++| |+++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPNG-------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI-LLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCCC-------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE-EECCEEhhhCCHHH
Confidence 6789999999622 468999 99999999999999999999999999999999999998 8876
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCcc---------------cchHHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~---------------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
.++|++|++.++. .|++||+.++.. .++++.+++++.++|.+. ....
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 142 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQR 142 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCC
Confidence 2799999998886 699999987631 112234445555555432 3445
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKD 794 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~ 794 (1065)
..+||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|+|||+++.+. .||+|++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQV-MDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 679999999999999999999999999999999999997766 456766542 789999999999985 5999999999
Q ss_pred CEEEEecCHHHHH
Q 001505 795 GKIEQSGKYEDLI 807 (1065)
Q Consensus 795 G~I~e~Gt~~eL~ 807 (1065)
|++++.|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (243)
T TIGR02315 222 GEIVFDGAPSELD 234 (243)
T ss_pred CEEEecCCHHHhC
Confidence 9999999998873
No 103
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-37 Score=333.49 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=170.2
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ .++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSSFG--------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI-LIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcChH
Confidence 4789999999963 358999 99999999999999999999999999999999999999 8876
Q ss_pred ----eEEEEecCCCCCCCcHHHHHhcCccc---chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 660 ----KKAYVPQSSWIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 660 ----~iayv~Q~pwif~gTIreNIlfG~~~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
.++|++|+|.+++.|++||+.++... ++++..++++.+++.+++ ......+||||||||++||
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHH
Confidence 38999999999999999999986432 234555666666664322 1235678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
||++++|+++||||||++||+.+.+.+ .+.++.+. .++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEII-EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999999987765 45676654 3799999999999976 599999999999999999999875
No 104
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.7e-37 Score=331.63 Aligned_cols=188 Identities=24% Similarity=0.394 Sum_probs=158.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++. ..++++| |+++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPGG------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI-RFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecCC------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEehhhcChhH
Confidence 6889999999643 2468999 99999999999999999999999999999999999999 8876
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCcc---c----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|+|.++. .|++||+.++.. . .+++.+++++.+++.+..... ..+|||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~ 143 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL-----------PMQLSGGE 143 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHH
Confidence 3799999999886 699999987532 1 234566677777776544333 34899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
|||++||||++++|+++||||||++||+++.+.+. +.++.+. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIM-RLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999987765 4566553 4789999999999986 5999999999985
No 105
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-37 Score=330.47 Aligned_cols=190 Identities=32% Similarity=0.414 Sum_probs=159.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .++++| ||++++||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS--------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI-LIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC--------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcCcCchhh
Confidence 468999999963 368999 99999999999999999999999999999999999999 8876
Q ss_pred -eEEEEecCCCCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -~iayv~Q~pwif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|+|.++. .|++||+.++... + +++.+++++.+++.+.+. ....+||||||||++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~ 140 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVA 140 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHH
Confidence 3899999998875 6999999876431 1 234455666666654433 334689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
||||+.++|+++||||||++||+.+.+.+. +.++.+. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELR-EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999987664 5676653 3789999999999875 59999999999998875
No 106
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-37 Score=343.14 Aligned_cols=204 Identities=24% Similarity=0.428 Sum_probs=168.0
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++.. ....++|+| |++|++||+++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 2 ~l~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKGT---PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-TVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCCC---ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 378999999997430 001468999 99999999999999999999999999999999999999 8876
Q ss_pred --------eEEEEecCC--CCCCCcHHHHHhcCcc---cchH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 660 --------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 660 --------~iayv~Q~p--wif~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
.++||+|+| .+|+.|++|||.|+.. ++.+ +.++.++.++|..+ .......+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LS 147 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMS 147 (286)
T ss_pred chHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCC
Confidence 379999998 6888999999998742 2322 22333444443211 2345678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEE
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e 799 (1065)
||||||++||||++.+|+++||||||++||+.+.+.+ .+.++.+. .++|+|+|||+++.+ ..||+|++|++|+|++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV-MRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998776 45676654 379999999999987 4699999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+++++.+
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999999876
No 107
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-37 Score=341.10 Aligned_cols=200 Identities=28% Similarity=0.403 Sum_probs=173.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|+++.|+.. +.++++| |++|++||+++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 5 ~l~~~~l~~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i-~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRYPDA------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEeCCC------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHH
Confidence 58999999999743 2468999 99999999999999999999999999999999999999 8887
Q ss_pred ----eEEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 ----~iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++|++|+| .+++.|++|||.++.. .+ +++.+++++.++|.+++...| .+||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~ 146 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQK 146 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHH
Confidence 379999998 5778999999998632 12 234667777778776655544 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
||++||||+.++|+++||||||++||+.+.+.++ +.++.+.+ ++|+|++||+++.++.||+|++|++|++++.|+.+
T Consensus 147 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVL-ETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999988764 56766553 78999999999999899999999999999999999
Q ss_pred HHHh
Q 001505 805 DLIA 808 (1065)
Q Consensus 805 eL~~ 808 (1065)
++.+
T Consensus 226 ~~~~ 229 (279)
T PRK13635 226 EIFK 229 (279)
T ss_pred HHhc
Confidence 9876
No 108
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-37 Score=334.44 Aligned_cols=198 Identities=27% Similarity=0.396 Sum_probs=164.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|+++ .++++| |+++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG-------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV-LIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc-------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEeccccCHhH
Confidence 4689999999642 468999 99999999999999999999999999999999999998 8776
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCcc------------c---chHHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD------------M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~------------~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
.++|++|++.++. .|++||+.++.. . ++++.+++++..++. .....+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 141 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQR 141 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCC
Confidence 2899999998876 799999987531 0 112233344444433 234556
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~ 794 (1065)
+.+||||||||++||||+.++|+++|||||||+||+++.+.+. +.++.+. .++|+|++||+++.+. .||+|++|++
T Consensus 142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM-DLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 7899999999999999999999999999999999999987764 5666654 3799999999999987 6999999999
Q ss_pred CEEEEecCHHHHHh
Q 001505 795 GKIEQSGKYEDLIA 808 (1065)
Q Consensus 795 G~I~e~Gt~~eL~~ 808 (1065)
|++++.|+++++.+
T Consensus 221 G~i~~~~~~~~~~~ 234 (241)
T cd03256 221 GRIVFDGPPAELTD 234 (241)
T ss_pred CEEEeecCHHHhhH
Confidence 99999999988743
No 109
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-37 Score=341.71 Aligned_cols=185 Identities=34% Similarity=0.482 Sum_probs=158.2
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-----------------eEEEEecCCCCC-
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ- 671 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-----------------~iayv~Q~pwif- 671 (1065)
.++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++| .++|++|++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i-~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV-LIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 357888 99999999999999999999999999999999999998 7765 389999999998
Q ss_pred CCcHHHHHhcCcc---c----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001505 672 TGTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1065)
Q Consensus 672 ~gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLL 744 (1065)
+.|++|||.++.. . .+++.+++++.++|.+.+...| .+||||||||++||||++++|+|+||
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5799999987532 1 1245566777777765554443 47999999999999999999999999
Q ss_pred eCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 745 DDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
||||++||+.+.+.+ .+.++.+. .++|+|++||+++.+. .||+|++|++|++++.|+++|+.+
T Consensus 185 DEPt~~LD~~~~~~l-~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 185 DEAFSALDPLIRREM-QDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999998766 45666653 3799999999999874 599999999999999999999976
No 110
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-37 Score=335.80 Aligned_cols=202 Identities=24% Similarity=0.365 Sum_probs=169.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g---- 659 (1065)
.|+++|++++|+. .++++| |++|++||+++|+|++|||||||+++|.|+++ |.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v-~i~g~~~~ 74 (251)
T PRK14251 4 IISAKDVHLSYGN--------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI-KFEGQNIY 74 (251)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE-EECCEEcc
Confidence 4899999999963 368999 99999999999999999999999999999986 479998 7766
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCccc----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|++.+++.|++|||.++... + +++.+++++.+++.++.+ .....+..+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 147 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQA 147 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhh
Confidence 28999999999999999999876421 1 234455666666643221 123456789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI-EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHH-HHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999997766 5567766667999999999999765 99999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14251 227 AGPTEEMFI 235 (251)
T ss_pred eCCHHHHHh
Confidence 999999875
No 111
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-37 Score=350.13 Aligned_cols=201 Identities=25% Similarity=0.370 Sum_probs=167.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|+... ...++++| ||+|++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 2 i~i~~l~~~y~~~~----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I-~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQGG----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV-LVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCCC----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHH
Confidence 68999999997320 12568999 99999999999999999999999999999999999999 8876
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+++||+|++.++. .|++|||.++.. .++ ++.++.++..+|.+. ......+|||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq 145 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQ 145 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHH
Confidence 3899999999886 799999988642 122 233445555554432 234456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecC
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt 802 (1065)
|||++||||+.++|+++|||||||+||+.+.+.+. +.++.+.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 146 ~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSIL-ELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999987764 56666543 7899999999999765 99999999999999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
.+++..
T Consensus 225 ~~~~~~ 230 (343)
T PRK11153 225 VSEVFS 230 (343)
T ss_pred HHHHHh
Confidence 999986
No 112
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-37 Score=335.32 Aligned_cols=202 Identities=23% Similarity=0.370 Sum_probs=168.7
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc--C---CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~--~---~~G~i~~v~g---- 659 (1065)
.++++|++++|++ .++++| |+++++||+++|+||+|||||||+++|.|..+ | ++|+| .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNK--------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI-VYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECC--------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE-EECCEECc
Confidence 5899999999963 358999 99999999999999999999999999999853 5 48998 7765
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCccc----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++||+|+|.+|+.|++||+.++... ++ ++.+++++.+++.+.+. +.......+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 148 (252)
T PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALG 148 (252)
T ss_pred CcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCccc
Confidence 38999999999999999999875321 11 22334555555543332 234667789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||+.++|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIE-ETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH-HHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988764 56776666799999999999865 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++.+
T Consensus 228 ~g~~~~~~~ 236 (252)
T PRK14239 228 YNDTKQMFM 236 (252)
T ss_pred eCCHHHHHh
Confidence 999999876
No 113
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=336.31 Aligned_cols=202 Identities=22% Similarity=0.384 Sum_probs=169.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc--C---CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~--~---~~G~i~~v~g---- 659 (1065)
.|+++|+++.|+. .++++| |++|++||+++|+|++|||||||+++|.|+++ | ++|+| .++|
T Consensus 12 ~l~i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i-~~~g~~~~ 82 (259)
T PRK14274 12 VYQINGMNLWYGQ--------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM-NYNGSNIL 82 (259)
T ss_pred eEEEeeEEEEECC--------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE-EECCEEcc
Confidence 5899999999963 358999 99999999999999999999999999999987 3 58998 7765
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCccc----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|++.+++.|++||+.|+... ++ ++.+++++..++.+++. +....++.+
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~ 155 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALS 155 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCccc
Confidence 37999999999999999999886421 11 12334455555544332 234567789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+++...+ .+.++.+.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI-EELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999997765 567877766899999999999875 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++.+
T Consensus 235 ~g~~~~~~~ 243 (259)
T PRK14274 235 CNDTNKMFS 243 (259)
T ss_pred ECCHHHHhh
Confidence 999999875
No 114
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-37 Score=335.42 Aligned_cols=202 Identities=26% Similarity=0.385 Sum_probs=170.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCc---ccC--CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE---IPR--ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe---~~~--~~G~i~~v~g---- 659 (1065)
.++++|+++.|++ .++++| |+++++||.++|+|++|||||||+++|.|. +++ ++|+| .++|
T Consensus 3 ~l~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14245 3 KIDARDVNFWYGD--------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRNIY 73 (250)
T ss_pred EEEEEEEEEEECC--------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE-EECCEecc
Confidence 5889999999964 358899 999999999999999999999999999986 454 58998 7765
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCccc--------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM--------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~~--------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|+|.+++.|++|||.++... .+++.+++++.+++.++++ +.....+.+
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFA 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCccc
Confidence 38999999999999999999876321 1234556666676654443 234567789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV-EELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998766 566777666899999999999875 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+++++.+
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14245 226 YDDTKKIFT 234 (250)
T ss_pred ECCHHHHhc
Confidence 999999976
No 115
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.7e-37 Score=327.13 Aligned_cols=187 Identities=33% Similarity=0.483 Sum_probs=159.7
Q ss_pred EEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------e
Q 001505 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------K 660 (1065)
Q Consensus 592 ~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g----------~ 660 (1065)
+++|++++|++. .++++| |+++++||+++|+||+|||||||+++|.|.++|++|+| .++| .
T Consensus 1 ~~~~l~~~~~~~-------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYKKG-------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeCCc-------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEhhhHHhhcc
Confidence 367899999641 358999 99999999999999999999999999999999999999 8887 4
Q ss_pred EEEEecCC--CCCCCcHHHHHhcCccc---chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 661 KAYVPQSS--WIQTGTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 661 iayv~Q~p--wif~gTIreNIlfG~~~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
++|++|+| .+++.|++||+.++.+. ++++.+++++.++|.+.....| ..||||||||++||||+
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 141 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAAL 141 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHH
Confidence 89999998 57889999999886432 2346778888888765544333 47999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcchhh-cCCEEEEEeCCEEE
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~ 798 (1065)
..+|+++||||||++||+++.+.+ .+.++.+ .+++|+|++||+++.+. .||+|++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERV-GELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999997766 5567665 35789999999999986 59999999999975
No 116
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-37 Score=329.49 Aligned_cols=195 Identities=24% Similarity=0.372 Sum_probs=163.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 1 i~~~~~~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD--------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA-TVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC--------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecCcChHHH
Confidence 478999999963 358999 99999999999999999999999999999999999999 8877
Q ss_pred --eEEEEecCCCCCC-CcHHHHHhcCcc---c----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwif~-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.++|++|++.++. .|++|||.++.. . .+++.++.++..+|.+.... ...+||||||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~ 140 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRL 140 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHH
Confidence 3899999998876 599999987522 1 12345666777776543322 2358999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL 806 (1065)
+||||++.+|+++||||||++||+++.+.+. +.++.+.+ ++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999987664 56665543 7899999999999764 999999999999999988764
No 117
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-37 Score=318.66 Aligned_cols=210 Identities=26% Similarity=0.417 Sum_probs=173.4
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~-------- 660 (1065)
.++++|.++.|+... ...+++++ ||+|.+||..+|+|+||||||||.++|+|..+|.+|+| .++|+
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I-~~~G~~~~~~~~~ 77 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI-LLDGKPLAPKKRA 77 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE-EECCcccCccccc
Confidence 478999999998651 11258889 99999999999999999999999999999999999999 99882
Q ss_pred ------EEEEecCCCC---CCCcHHHHHhc-----CcccchHHHHHHHHHhcchHH-HHhhcCCCCccccCCCCCCCHHH
Q 001505 661 ------KAYVPQSSWI---QTGTIRENILF-----GKDMRQSFYEEVLEGCALNQD-IEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 661 ------iayv~Q~pwi---f~gTIreNIlf-----G~~~d~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+-+|+|+|.= ..-||++-|.= |.+-.+++..++++..+|.+. +...| ..|||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ 146 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQ 146 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhH
Confidence 7899999973 34677777642 222234567888898988754 44555 4799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecC
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt 802 (1065)
|||||||||+.-+|+++||||||||||+.+...|++ .+..+.+ +-|.|+|||++..+.+ ||+|.||++|+|+|.++
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Iln-lL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILN-LLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHH-HHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeec
Confidence 999999999999999999999999999999999875 4545444 5599999999999866 99999999999999999
Q ss_pred HHHHHhhcchHHHH
Q 001505 803 YEDLIADQNSELVR 816 (1065)
Q Consensus 803 ~~eL~~~~~~~~~~ 816 (1065)
-+++.......|.+
T Consensus 226 ~~~l~~~~~h~ytr 239 (252)
T COG1124 226 TEELLSHPSHPYTR 239 (252)
T ss_pred hhhhhcCCccHHHH
Confidence 99998732334443
No 118
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-34 Score=311.24 Aligned_cols=499 Identities=16% Similarity=0.167 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSS--YHYGLVLASVFLFAKTVESLTQRQWYFGAN 343 (1065)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 343 (1065)
...++|.+++.++....+.+...+.. ..++..+-+++.+.+.... .-+..++...++++.. +++.......+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g---~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~---is~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALG---IGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSL---ISQLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 44677888888877766666554433 3344333344432221101 1111112222222222 22222233344
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC--CC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 001505 344 RIGIRVRSALTVLIYKRSMAIKFA--GP-SSGIIINMINVDVERIGDFFLYIHRIWLLPVQVFLALVILYKNLGAAPAFA 420 (1065)
Q Consensus 344 r~~~~iR~~L~~~iy~K~L~ls~~--~~-~~G~ivnlms~D~~~i~~~~~~~~~~w~~pl~i~~al~lL~~~lg~~~~l~ 420 (1065)
....++|..++. |.+.-+.. .+ +++.++..++.|+..|.-.+..+.++..+.+-+..++..|++.-+ .+.+.
T Consensus 78 ~~I~klr~~~~~----kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp-~mf~l 152 (546)
T COG4615 78 HFIYKLRSEFIK----KILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSP-KMFLL 152 (546)
T ss_pred HHHHHHHHHHHH----HHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 455566665544 44433322 22 889999999999999986666777666655555555556665444 55555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchH--HHHHHHHH-HHHHHHHHHHHHHHHH
Q 001505 421 ALFSTIFVMVSNTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWE--QEFLKKLL-RLREIERDSLKKYLYT 497 (1065)
Q Consensus 421 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE--~~f~~~i~-~~R~~E~~~l~~~~~~ 497 (1065)
.++.+++.+..+.....+..+...+..+..|+-.+..+.++.|-|.+|+..-- ..+.+.+. +.++.+... .+.
T Consensus 153 ~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~----~~~ 228 (546)
T COG4615 153 TVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHI----IRA 228 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhh----hhh
Confidence 55666666667777777777777777888899999999999999999987632 22233322 222222211 111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001505 498 CSAI-AFLFWASPTLVSVITFGVCILLKTPL-TSGAVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQ 575 (1065)
Q Consensus 498 ~~~~-~~~~~~~p~~v~~~~f~~~~~~~~~L-t~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~ 575 (1065)
..+. ....|...++..++....|+...-.. +...+.|.....-.++.|+.+....++.+.+|.++++||.++=..|+.
T Consensus 229 n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~ 308 (546)
T COG4615 229 NTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYK 308 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcc
Confidence 1111 22334433333333333223222111 122444444556668999999999999999999999999998766553
Q ss_pred CCCCCCCCCCCCCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcE
Q 001505 576 KKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA 654 (1065)
Q Consensus 576 ~~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i 654 (1065)
.+.....+.+ .-..||++|+.|+|+++ ..-+.. |++|++||+|-|+|.+||||||+++++.|.+.|++|+|
T Consensus 309 a~~~~~q~~p-~~~~lelrnvrfay~~~-------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 309 ADFPRPQAFP-DWKTLELRNVRFAYQDN-------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred ccCCCCCcCC-cccceeeeeeeeccCcc-------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence 3221111111 23569999999999875 355555 99999999999999999999999999999999999999
Q ss_pred EEECCe-------------EEEEecCCCCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 655 IKVHGK-------------KAYVPQSSWIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 655 ~~v~g~-------------iayv~Q~pwif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.+||+ ++-|.-+-|+|..++ -++. .+++..++-++.-.+..-.+ +.+|--+ -..
T Consensus 381 -~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~k 448 (546)
T COG4615 381 -LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLK 448 (546)
T ss_pred -eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccc
Confidence 99985 344555666665543 1222 23444444444444433221 2223222 257
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhcCCEEEEEeCCEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~ 798 (1065)
||-|||.|+|+--|+.-+.|||+|||=-+--||+=.+.-.+..+ -.+ .|||++.|||+-.+..+|||++.|+||+++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lL-p~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL-PLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHh-HHHHHhCCeEEEEecCchhhhhHHHHHHHhcCcee
Confidence 99999999999999999999999999999999999776655544 333 399999999999999999999999999999
Q ss_pred Ee
Q 001505 799 QS 800 (1065)
Q Consensus 799 e~ 800 (1065)
|.
T Consensus 528 e~ 529 (546)
T COG4615 528 EL 529 (546)
T ss_pred ec
Confidence 85
No 119
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-37 Score=329.80 Aligned_cols=196 Identities=32% Similarity=0.444 Sum_probs=163.1
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------eE
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------~i 661 (1065)
++++|++++|++.. ...++++| |++|++|++++|+||+|||||||+++|.|.++|.+|+| .++| .+
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGG----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV-LVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCC----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccccCcE
Confidence 46899999997520 11468999 99999999999999999999999999999999999999 8877 48
Q ss_pred EEEecCCCCCC-CcHHHHHhcCccc-------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHH
Q 001505 662 AYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1065)
Q Consensus 662 ayv~Q~pwif~-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLAR 733 (1065)
+||+|+|.++. .|++|||.++... .+++.+++++..+|.+.+.. +..+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99999999887 7999999876321 12345566666666544433 33589999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEe--CCEEEEecCH
Q 001505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMK--DGKIEQSGKY 803 (1065)
Q Consensus 734 Aly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~--~G~I~e~Gt~ 803 (1065)
|++++|+++||||||++||+.+.+.++ +.++.+. .++|+|++||+++.+. .||+|++|+ +|+|++.++-
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999988765 5666653 3789999999999864 599999999 7999998764
No 120
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.2e-37 Score=330.60 Aligned_cols=190 Identities=31% Similarity=0.428 Sum_probs=157.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++.. ...++++| |+++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 1 l~~~~l~~~~~~~~----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGGG----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV-RVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCCC----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE-EECCEehhhcchhH
Confidence 46899999997520 01468999 99999999999999999999999999999999999998 7765
Q ss_pred -------eEEEEecCCCCCCC-cHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 -------KKAYVPQSSWIQTG-TIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 -------~iayv~Q~pwif~g-TIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
.++|++|+|.++.+ |++||+.++..+ + +++.+++++..+|++. ...+..+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 144 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGG 144 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHH
Confidence 38999999998876 999999886432 1 2344455555555433 33445689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEeCCEE
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~~G~I 797 (1065)
||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEV-MELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999997766 556766654 7899999999999889999999999975
No 121
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=336.42 Aligned_cols=204 Identities=23% Similarity=0.364 Sum_probs=172.9
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC--
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g-- 659 (1065)
++.|+++|++++|++ .++++| |++|++||+++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 17 ~~~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~~~g~~ 87 (267)
T PRK14235 17 EIKMRARDVSVFYGE--------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-TLDGED 87 (267)
T ss_pred CceEEEEeEEEEECC--------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCEE
Confidence 457999999999963 368999 999999999999999999999999999999975 89998 7766
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCccc-----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM-----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~~-----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
.++|++|+|.+++.|++|||.|+..+ + +++.+++++.+++.+++. +.....
T Consensus 88 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~ 160 (267)
T PRK14235 88 IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEP 160 (267)
T ss_pred CcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCC
Confidence 37999999999999999999876321 1 233456666666654432 234566
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCE
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~ 796 (1065)
+.+||||||||++||||++.+|+++||||||++||+++.+.+ .++++.+.+++|+|++||+++.+. .||+|++|++|+
T Consensus 161 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~ 239 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGN 239 (267)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCE
Confidence 789999999999999999999999999999999999997765 567777666789999999999985 589999999999
Q ss_pred EEEecCHHHHHh
Q 001505 797 IEQSGKYEDLIA 808 (1065)
Q Consensus 797 I~e~Gt~~eL~~ 808 (1065)
|++.|+.+++..
T Consensus 240 i~~~g~~~~~~~ 251 (267)
T PRK14235 240 LVEVGDTEKMFT 251 (267)
T ss_pred EEEeCCHHHHHh
Confidence 999999999875
No 122
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.3e-36 Score=330.81 Aligned_cols=197 Identities=22% Similarity=0.391 Sum_probs=166.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .+++++ |++|++||.++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYGA--------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-SVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcccCChhh
Confidence 678999999963 358999 99999999999999999999999999999999999999 8877
Q ss_pred --eEEEEecCCCC-CCCcHHHHHhcCccc---chH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWI-QTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwi-f~gTIreNIlfG~~~---d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.++|++|++.+ ++.|++||+.++... +++ +.++.++.. |.+.....+..+||||||||+
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARL-----------GLAERADDKVRELNGGHRRRV 141 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHH
Confidence 38999999987 578999999875321 111 222233333 333445667789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
+||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.++.||+|++|++|++++.|+.+++.
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999999988765 5666654 379999999999999889999999999999999999987
Q ss_pred h
Q 001505 808 A 808 (1065)
Q Consensus 808 ~ 808 (1065)
+
T Consensus 221 ~ 221 (236)
T TIGR03864 221 G 221 (236)
T ss_pred H
Confidence 6
No 123
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=338.74 Aligned_cols=199 Identities=23% Similarity=0.393 Sum_probs=170.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.|+++|++++|+.+ .++++| |++|++||+++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 5 ~l~~~~l~~~~~~~-------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i-~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSDG-------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE-EECCEECCCCcch
Confidence 58999999999633 468999 99999999999999999999999999999999999999 8876
Q ss_pred ------eEEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 ------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 ------~iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
.++|++|+| .+++.|++|||.++.. +. +++.+++++.++|.+. ......+||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G 145 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFG 145 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHH
Confidence 279999998 6789999999987532 11 2345666666666532 24557899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
||||++||||++.+|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|++||+++.++ .||+|++|++|++++.|
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l-~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI-MKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999998766 456666543 799999999999986 69999999999999999
Q ss_pred CHHHHHh
Q 001505 802 KYEDLIA 808 (1065)
Q Consensus 802 t~~eL~~ 808 (1065)
+++++.+
T Consensus 225 ~~~~~~~ 231 (283)
T PRK13636 225 NPKEVFA 231 (283)
T ss_pred CHHHHhc
Confidence 9999886
No 124
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=339.53 Aligned_cols=201 Identities=26% Similarity=0.382 Sum_probs=171.6
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCC---CcEEEECC-----
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS---GAAIKVHG----- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~---G~i~~v~g----- 659 (1065)
..++++|+++.|++. ..+++++ |++|++||+++|+||+|||||||+++|.|+++|.+ |+| .++|
T Consensus 4 ~~l~i~~l~~~~~~~------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPDS------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLTA 76 (282)
T ss_pred ceEEEEEEEEEcCCC------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECCc
Confidence 458999999999753 2468999 99999999999999999999999999999999988 898 8876
Q ss_pred --------eEEEEecCCC--CCCCcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 660 --------KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 660 --------~iayv~Q~pw--if~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
.++||+|+|+ +++.|++|||.|+.. .++ ++.+++++.++|.+..... ..+||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS 145 (282)
T PRK13640 77 KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLS 145 (282)
T ss_pred CCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCC
Confidence 3799999984 678999999998743 222 3455667777776544433 36999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEeCCEEEEe
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~ 800 (1065)
||||||++||||++++|+++||||||++||+.+.+.+. +.++.+.+ ++|+|++||+++.+..||+|++|++|++++.
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL-KLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999988764 56666543 7899999999999989999999999999999
Q ss_pred cCHHHHHh
Q 001505 801 GKYEDLIA 808 (1065)
Q Consensus 801 Gt~~eL~~ 808 (1065)
|+.+++..
T Consensus 225 g~~~~~~~ 232 (282)
T PRK13640 225 GSPVEIFS 232 (282)
T ss_pred CCHHHHhc
Confidence 99999875
No 125
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=341.39 Aligned_cols=203 Identities=23% Similarity=0.368 Sum_probs=168.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++... ...++++| |++|++||+++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 3 i~~~~l~~~y~~~~~---~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i-~~~g~~~~~~~~~~ 78 (305)
T PRK13651 3 IKVKNIVKIFNKKLP---TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI-EWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEECCCCC---ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EEeceecccccccc
Confidence 789999999975300 01358999 99999999999999999999999999999999999998 7753
Q ss_pred ---------------------------eEEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHH
Q 001505 660 ---------------------------KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDI 703 (1065)
Q Consensus 660 ---------------------------~iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di 703 (1065)
.++||+|+| .+++.|++|||.||.. .+ +++.+++++.++|.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 279999986 6888999999998742 22 23445666666664322
Q ss_pred HhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcch
Q 001505 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF 782 (1065)
Q Consensus 704 ~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~ 782 (1065)
......+||||||||++||||+..+|+++||||||++||+...+.+. +.++.+. .++|+|+|||+++.
T Consensus 159 ----------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivtHd~~~ 227 (305)
T PRK13651 159 ----------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDN 227 (305)
T ss_pred ----------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeeCHHH
Confidence 23456789999999999999999999999999999999999977664 5565553 48999999999997
Q ss_pred h-hcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 783 L-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 783 l-~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
+ ..||+|++|++|+|++.|+.+++.+
T Consensus 228 ~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 228 VLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 6 5699999999999999999999876
No 126
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=334.98 Aligned_cols=203 Identities=24% Similarity=0.363 Sum_probs=169.9
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g--- 659 (1065)
..++++|+++.|++ .++++| |++|++||+++|+|++|||||||+++|.|.++| ++|+| .++|
T Consensus 11 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~i 81 (258)
T PRK14268 11 PQIKVENLNLWYGE--------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV-SIEGEDI 81 (258)
T ss_pred eeEEEeeeEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE-EECCEEc
Confidence 46999999999963 358999 999999999999999999999999999999875 79998 7765
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|++.+++.|++|||.|+.. .+. ++.+++++.+++.+++. ........+
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 154 (258)
T PRK14268 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALS 154 (258)
T ss_pred ccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhh
Confidence 2799999999999999999988632 122 22344555555543221 223456779
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+.+...+ .+.++.+.+++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI-EDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHH-HHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998766 566776656799999999999875 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+++++.+
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14268 234 FGQTRQIFH 242 (258)
T ss_pred eCCHHHHhc
Confidence 999999875
No 127
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=331.84 Aligned_cols=202 Identities=24% Similarity=0.381 Sum_probs=170.2
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g---- 659 (1065)
.++++|+++.|++ .+.++| ||+|++||+++|+|++|||||||+++|.|.+++ .+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYGD--------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV-LLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEECC--------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEcc
Confidence 5889999999963 358999 999999999999999999999999999998763 68998 7775
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCccc----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|+|.+++.|++|||.++... + +++.+++++.+++.+++. ........+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 146 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALG 146 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCC
Confidence 37999999999999999999986421 1 233445556666554443 234566789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+.+.+.+ .++++.+.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI-EELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998766 567777666899999999999875 499999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++..
T Consensus 226 ~~~~~~~~~ 234 (250)
T PRK14240 226 FGDTVDLFT 234 (250)
T ss_pred eCCHHHHHh
Confidence 999999875
No 128
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-36 Score=325.98 Aligned_cols=189 Identities=24% Similarity=0.389 Sum_probs=160.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|+++.|++ .++++| |+++++| +++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~~~~~~~~--------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK--------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI-RIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC--------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCCccccchHHH
Confidence 478999999964 368999 9999999 999999999999999999999999999999 8877
Q ss_pred --eEEEEecCCCCCCC-cHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwif~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.++|++|+|.+|.+ |++|||.+... .+ +++.+++++.+++.+..+ ....+||||||||+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 139 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRV 139 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHH
Confidence 38999999999875 99999987421 11 234556677777654432 23467999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
+||||+.++|+++||||||++||+.+.+.+. +.++.+.+++|+|+|||+++.+. .||+|++|++|+|++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFR-NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999988764 56776666799999999999986 59999999999998865
No 129
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=335.79 Aligned_cols=204 Identities=25% Similarity=0.365 Sum_probs=173.8
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC--
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g-- 659 (1065)
...|+++|++++|+. .++++| |+++++||.++|+|++|||||||+++|.|+++ |++|+| .++|
T Consensus 18 ~~~l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~ 88 (267)
T PRK14237 18 EIALSTKDLHVYYGK--------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI-LYRGID 88 (267)
T ss_pred CeEEEEeeEEEEECC--------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE-EECCEE
Confidence 346999999999953 468999 99999999999999999999999999999986 579998 7776
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCccc----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
.++|++|++.++..|++|||.++... + +++..++++.++|.+++. +..+...
T Consensus 89 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~ 161 (267)
T PRK14237 89 INRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSA 161 (267)
T ss_pred cccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCc
Confidence 37999999999999999999886321 1 234556677777765442 3356778
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
.+||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+. .||+|++|++|++
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL-EETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 89999999999999999999999999999999999997766 456776666799999999999875 5999999999999
Q ss_pred EEecCHHHHHh
Q 001505 798 EQSGKYEDLIA 808 (1065)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1065)
++.|+.+++.+
T Consensus 241 ~~~g~~~~~~~ 251 (267)
T PRK14237 241 IEYDKTRNIFT 251 (267)
T ss_pred EEeCCHHHHhc
Confidence 99999999875
No 130
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.2e-36 Score=316.75 Aligned_cols=165 Identities=28% Similarity=0.551 Sum_probs=150.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe---------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------- 660 (1065)
|+++|++++|+.. ..++++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|.
T Consensus 1 i~~~~~~~~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQ------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCCC------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCEEHHHHHHHH
Confidence 4789999999753 2468999 99999999999999999999999999999999999999 88873
Q ss_pred ---EEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001505 661 ---KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1065)
Q Consensus 661 ---iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~ 737 (1065)
++|++|+|++++.|++||| ..+||||||||++||||+++
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 74 SSLISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred HhhEEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 8999999999999999998 56899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEec
Q 001505 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 738 ~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~G 801 (1065)
+|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLL-SLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999977664 5666665689999999999999999999999999998765
No 131
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-36 Score=329.39 Aligned_cols=201 Identities=28% Similarity=0.398 Sum_probs=165.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++.. ...+++++ |+++++||.++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 2 i~~~~l~~~~~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDTG----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCCC----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 68899999996420 01278999 99999999999999999999999999999999999998 7765
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|+|.++. .|++|||.++.. .+ .++.++.++..+|.+. ......+|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~ 145 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQ 145 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHH
Confidence 3799999999986 699999987532 11 1233444444444332 334457899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecC
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt 802 (1065)
|||++||||+.++|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSI-LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999997765 456766542 789999999999976 499999999999999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
++++.+
T Consensus 225 ~~~~~~ 230 (233)
T cd03258 225 VEEVFA 230 (233)
T ss_pred HHHHhc
Confidence 988764
No 132
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=336.67 Aligned_cols=198 Identities=30% Similarity=0.432 Sum_probs=168.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|+.+ .++++| ||+|++||.++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPDG-------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-LVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCCC-------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEECCccccHH
Confidence 6889999999643 458999 99999999999999999999999999999999999998 8876
Q ss_pred ----eEEEEecCCC--CCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 ----KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 ----~iayv~Q~pw--if~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++|++|+|. +++.|++|||.|+.. .+ +++.+++++.++|.+. .......||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~ 142 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQG 142 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHH
Confidence 2799999986 578899999998742 12 2344555666665443 2334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
||++||||++++|+++||||||++||+.+...+. +.++.+. +++|+|++||+++.++.||+|++|++|++++.|+.++
T Consensus 143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL-ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999987664 4566543 4799999999999999999999999999999999999
Q ss_pred HHh
Q 001505 806 LIA 808 (1065)
Q Consensus 806 L~~ 808 (1065)
+..
T Consensus 222 ~~~ 224 (274)
T PRK13644 222 VLS 224 (274)
T ss_pred Hhc
Confidence 875
No 133
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.2e-36 Score=325.79 Aligned_cols=190 Identities=31% Similarity=0.423 Sum_probs=158.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++ .++++| |++|++||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v-~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN--------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-YIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC--------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCccc
Confidence 468999999964 358999 99999999999999999999999999999999999999 8876
Q ss_pred -eEEEEecCCCCCC-CcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -KKAYVPQSSWIQT-GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -~iayv~Q~pwif~-gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|++.++. .|++||+.++.. .++ ++.+++++..++.+. ......+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~ 140 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVA 140 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHH
Confidence 3899999999985 699999987632 122 233445555555433 33445689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEec
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~G 801 (1065)
||||++++|+++||||||++||+++.+.+. +.++.+. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 141 laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999987764 5666654 37899999999998765 9999999999999876
No 134
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=329.94 Aligned_cols=195 Identities=27% Similarity=0.345 Sum_probs=163.3
Q ss_pred cEEEeeeEEEecccccccCC-CcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 590 AIDIEAGEYAWDAREENFKK-PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~-~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
.++++|++++|+.+ . ..+++++ ||+|++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 5 ~l~~~~l~~~~~~~-----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQEG-----SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCCC-----CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCCH
Confidence 48999999999753 1 1468999 99999999999999999999999999999999999999 8876
Q ss_pred ---------eEEEEecCCCCCCC-cHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 660 ---------KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 660 ---------~iayv~Q~pwif~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
.++|++|+|.++.. |++||+.++.. .+ +++.+++++.++|.+ ....+..+||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 147 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-----------RANHRPSELS 147 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCC
Confidence 38999999998865 99999987421 11 233455556555543 2344567899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhcCCEEEEEeCCEEEEe
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~ 800 (1065)
||||||++||||+..+|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++.+..+|++++|++|+|++.
T Consensus 148 gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI-FQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998766 45666653 47999999999999999999999999999988
Q ss_pred cC
Q 001505 801 GK 802 (1065)
Q Consensus 801 Gt 802 (1065)
|+
T Consensus 227 ~~ 228 (233)
T PRK11629 227 LS 228 (233)
T ss_pred ec
Confidence 76
No 135
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=331.58 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=169.0
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC-----CCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~-----~G~i~~v~g---- 659 (1065)
.++++|+++.|++ .++++| |++|++|++++|+|++|||||||+++|.|+++|. +|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFYHK--------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV-LLDNENIY 74 (251)
T ss_pred eEEEEEEEEEECC--------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE-EECCEEcc
Confidence 5899999999963 358999 9999999999999999999999999999999987 5988 6654
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCccc----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|+|.+++.|++|||.++..+ .+ ++.+++++..++.+.+ .+.....+.+
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 147 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLA 147 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCccc
Confidence 38999999999999999999986432 11 2233334444443322 2335677889
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+.+...+ .+.++.+.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI-EELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 999999999999999999999999999999999998766 5577766567999999999999765 79999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++..
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14249 227 YGRTGEIFS 235 (251)
T ss_pred eCCHHHHHh
Confidence 999999875
No 136
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=336.03 Aligned_cols=203 Identities=23% Similarity=0.332 Sum_probs=169.2
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g--- 659 (1065)
..++++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|+.+ |.+|+| .++|
T Consensus 20 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 90 (268)
T PRK14248 20 HILEVKDLSIYYGE--------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI-LYEGLNI 90 (268)
T ss_pred ceEEEEEEEEEeCC--------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE-EECCEEc
Confidence 45999999999963 358999 99999999999999999999999999999864 689998 7765
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCcccc--------hHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDMR--------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~d--------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++|++|++.++++|++|||.++.... +++..++++.+++.+++. ........
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 163 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSAL 163 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcc
Confidence 389999999999999999998763211 122334444554432221 23456778
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~ 798 (1065)
+||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+. .||+|++|++|+++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI-EELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHH-HHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998766 567777666789999999999875 59999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+.+++.+
T Consensus 243 ~~~~~~~~~~ 252 (268)
T PRK14248 243 EYDQTEQIFT 252 (268)
T ss_pred EeCCHHHHHh
Confidence 9999999876
No 137
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.7e-36 Score=323.59 Aligned_cols=190 Identities=26% Similarity=0.369 Sum_probs=162.5
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++ .++++| |+++++|+.++|+||+|||||||+++|.|+.+|++|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK--------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI-TFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC--------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCCcccchHHHH
Confidence 468999999953 368999 99999999999999999999999999999999999999 8877
Q ss_pred -eEEEEecCCCCC-CCcHHHHHhcCcc---cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001505 660 -KKAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1065)
Q Consensus 660 -~iayv~Q~pwif-~gTIreNIlfG~~---~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARA 734 (1065)
.++||+|++.++ +.|++|||.++.. .++++.+++++..++.+.+. .....||||||||++||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~a 140 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALA 140 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHH
Confidence 389999999887 6899999987532 24556667777777755433 3456899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 735 ly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999987764 5666554 4799999999999986 49999999999998865
No 138
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=336.16 Aligned_cols=204 Identities=27% Similarity=0.413 Sum_probs=172.6
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC--
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g-- 659 (1065)
...++++|++++|++ .++++| ||++++||+++|+|++|||||||+++|.|.+++ .+|+| .++|
T Consensus 23 ~~~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i-~i~g~~ 93 (272)
T PRK14236 23 QTALEVRNLNLFYGD--------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI-RLDGQN 93 (272)
T ss_pred CcEEEEEEEEEEECC--------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE-EECCEE
Confidence 346999999999963 358999 999999999999999999999999999999874 89998 7765
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCccc----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
.++|++|++.+|+.|++|||.++... . +++.+++++..++.+++. +..+.++
T Consensus 94 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 166 (272)
T PRK14236 94 IYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENA 166 (272)
T ss_pred CcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCc
Confidence 47999999999999999999876321 1 233455566666654443 3456778
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
.+||||||||++||||++++|+++||||||++||+.+...+ .+.++.+.+++|+|++||+++.+. .||+|++|++|+|
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l-~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI-EELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999997665 567777666799999999999875 5999999999999
Q ss_pred EEecCHHHHHh
Q 001505 798 EQSGKYEDLIA 808 (1065)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1065)
++.|+++++.+
T Consensus 246 ~~~g~~~~~~~ 256 (272)
T PRK14236 246 VEYGDTDTLFT 256 (272)
T ss_pred EecCCHHHHhc
Confidence 99999999875
No 139
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.8e-36 Score=326.53 Aligned_cols=198 Identities=26% Similarity=0.414 Sum_probs=162.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK--------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI-RFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC--------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCCCCHHH
Confidence 468999999963 358899 99999999999999999999999999999999999999 8876
Q ss_pred ----eEEEEecCCCCCCC-cHHHHHhcCcccc--h---HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR--Q---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 ----~iayv~Q~pwif~g-TIreNIlfG~~~d--~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.++|++|++.++.+ |++||+.++.... . ++.+++++.. ..+ +.....+..+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l----~~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRL----KERRKQLAGTLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhh----hhhhhCchhhCCHHHHHHH
Confidence 28999999998876 9999998875421 1 1122222222 111 2233456778999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
+||||+.++|+++||||||++||+++.+.+ .+.++.+. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEI-FEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999997766 45676554 5789999999999865 49999999999999999988875
Q ss_pred h
Q 001505 808 A 808 (1065)
Q Consensus 808 ~ 808 (1065)
+
T Consensus 221 ~ 221 (222)
T cd03224 221 A 221 (222)
T ss_pred c
Confidence 4
No 140
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=331.39 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=172.6
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g--- 659 (1065)
..++++|+++.|+. .++++| |+++++||+++|+|++|||||||+++|.|..+| .+|+| .++|
T Consensus 3 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i 73 (251)
T PRK14270 3 IKMESKNLNLWYGE--------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV-LLDGKNI 73 (251)
T ss_pred cEEEEEEeEEEECC--------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE-EECCEec
Confidence 35889999999963 358999 999999999999999999999999999999875 78998 7765
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCccc----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++|++|++.+++.|++||+.|+... + +++.+++++.+++.++++. ....+..
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~ 146 (251)
T PRK14270 74 YDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSAL 146 (251)
T ss_pred ccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcc
Confidence 28999999999999999999986421 1 2345567777777554432 2345678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~ 798 (1065)
.||||||||++||||++++|+|+|||||||+||+.+...+ .+.++.+.+++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 147 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 225 (251)
T PRK14270 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKI-EDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI 225 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEE
Confidence 9999999999999999999999999999999999998776 4577776667999999999998765 9999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+.+++..
T Consensus 226 ~~~~~~~~~~ 235 (251)
T PRK14270 226 EFNKTEKIFL 235 (251)
T ss_pred EeCCHHHHhc
Confidence 9999999875
No 141
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=349.39 Aligned_cols=202 Identities=26% Similarity=0.367 Sum_probs=170.1
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------- 660 (1065)
..++++|++++|++ ..+++| ||++++||+++|+||+|||||||+++|.|+.+|++|+| .++|.
T Consensus 18 ~~l~l~~v~~~~~~--------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~ 88 (377)
T PRK11607 18 PLLEIRNLTKSFDG--------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVPP 88 (377)
T ss_pred ceEEEEeEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCH
Confidence 45999999999963 357888 99999999999999999999999999999999999999 88883
Q ss_pred ----EEEEecCCCCCC-CcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH
Q 001505 661 ----KAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1065)
Q Consensus 661 ----iayv~Q~pwif~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR 728 (1065)
++||+|++-+|. .|++|||.|+.. .+ +++.+++++..+|.+..+. +..+||||||||
T Consensus 89 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QR 157 (377)
T PRK11607 89 YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQR 157 (377)
T ss_pred HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHH
Confidence 899999999996 599999998743 12 2344556666666544333 335899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHH
Q 001505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 729 IaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
|+||||++++|+++|||||||+||+++.+.+.+ .++.+. .+.|+|+|||+.+.+ ..||+|++|++|+|++.|+.+|
T Consensus 158 VaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQL-EVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 999999999999999999999999999877643 454443 378999999999985 5699999999999999999999
Q ss_pred HHhhcc
Q 001505 806 LIADQN 811 (1065)
Q Consensus 806 L~~~~~ 811 (1065)
+..+..
T Consensus 237 ~~~~p~ 242 (377)
T PRK11607 237 IYEHPT 242 (377)
T ss_pred HHhCCc
Confidence 987333
No 142
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=332.95 Aligned_cols=201 Identities=22% Similarity=0.370 Sum_probs=167.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC-----
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG----- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g----- 659 (1065)
-+++|+++.|++ .+.++| ||++++||+++|+|++|||||||+++|.|..+ |.+|+| .++|
T Consensus 6 ~~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~~ 76 (251)
T PRK14244 6 ASVKNLNLWYGS--------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL-DIDGIDVYS 76 (251)
T ss_pred EEeeeEEEEECC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE-EECCEehHh
Confidence 468999999963 468999 99999999999999999999999999999986 479998 7766
Q ss_pred ----------eEEEEecCCCCCCCcHHHHHhcCccc-----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM-----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 ----------~iayv~Q~pwif~gTIreNIlfG~~~-----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|++.++++|++|||.++... +. ++..++++..+|.+++. +.++..+.+
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 149 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFE 149 (251)
T ss_pred cccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhh
Confidence 37999999999999999999876321 11 22334455555543321 234566789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|+|||+++.+. .||+|++|++|++++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI-ENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999997765 567777666899999999999986 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++.+
T Consensus 229 ~~~~~~~~~ 237 (251)
T PRK14244 229 YNTTQEIFK 237 (251)
T ss_pred eCCHHHHhc
Confidence 999999876
No 143
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-36 Score=323.73 Aligned_cols=188 Identities=27% Similarity=0.408 Sum_probs=159.5
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++. . .| |+++++||+++|+||+|||||||+++|+|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQ--------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCCE--------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCcCCHhH
Confidence 4689999999642 1 27 99999999999999999999999999999999999999 8887
Q ss_pred -eEEEEecCCCCCCC-cHHHHHhcCcc-------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -KKAYVPQSSWIQTG-TIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -~iayv~Q~pwif~g-TIreNIlfG~~-------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|+|.++.+ |++||+.++.. .++++.+++++.++|.+.....| .+||||||||++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 138 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVA 138 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHH
Confidence 38999999999875 99999987632 12345667777777765554443 489999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEec
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~G 801 (1065)
||||++++|+++||||||++||+++.+.+ .+.++.+. +++|+|++||+++.++. ||+|++|++|++++.|
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEM-LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999998766 45676654 37899999999999865 9999999999998765
No 144
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-36 Score=330.91 Aligned_cols=200 Identities=28% Similarity=0.424 Sum_probs=165.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++. .+++++ |+++++|++++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG-------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc-------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCeEcCcCChHH
Confidence 4689999999741 358899 99999999999999999999999999999999999998 8876
Q ss_pred ---eEEEEecCCCCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH
Q 001505 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1065)
Q Consensus 660 ---~iayv~Q~pwif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR 728 (1065)
.++|++|+|.++. .|++||+.++..+ + +++.+++++..++.+ +......+.+||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qr 143 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQR 143 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHH
Confidence 3799999999885 7999999876432 2 123334444444432 012345678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHH
Q 001505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 729 IaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
++||||++++|+++||||||++||+++.+.+ .+.++.+. +++|+|++||+++.+ ..||+|++|++|++++.|++++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l-~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQL-QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHH-HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999997665 45666654 379999999999976 4599999999999999999998
Q ss_pred HHh
Q 001505 806 LIA 808 (1065)
Q Consensus 806 L~~ 808 (1065)
+.+
T Consensus 223 ~~~ 225 (242)
T cd03295 223 ILR 225 (242)
T ss_pred HHc
Confidence 865
No 145
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.6e-36 Score=324.95 Aligned_cols=188 Identities=33% Similarity=0.506 Sum_probs=157.1
Q ss_pred EEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------EE
Q 001505 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KA 662 (1065)
Q Consensus 592 ~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------ia 662 (1065)
+++|++++|++ .++++| |+++++||+++|+||+|||||||+++|.|+++|++|+| .++|. ++
T Consensus 1 ~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~i~ 71 (213)
T cd03235 1 EVEDLTVSYGG--------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI-RVFGKPLEKERKRIG 71 (213)
T ss_pred CcccceeEECC--------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCccHHHHHhheE
Confidence 36789999963 358899 99999999999999999999999999999999999999 89883 89
Q ss_pred EEecCCCC---CCCcHHHHHhcCccc-----------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH
Q 001505 663 YVPQSSWI---QTGTIRENILFGKDM-----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1065)
Q Consensus 663 yv~Q~pwi---f~gTIreNIlfG~~~-----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR 728 (1065)
|++|+|.+ ++.|++|||.++... ++++.+++++.+++.+.+.. ...+||||||||
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qr 140 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQR 140 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHH
Confidence 99999876 568999999876421 22456667777777654432 345899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEec
Q 001505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 729 IaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~G 801 (1065)
++||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 141 v~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIY-ELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999987764 5666554 57899999999999865 8999999986 55554
No 146
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-36 Score=335.82 Aligned_cols=201 Identities=27% Similarity=0.400 Sum_probs=170.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|+.. ...++++| |+++++||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEKE-----SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-KIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCCC-----CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE-EECCEECCcCCHH
Confidence 48999999999753 22458999 99999999999999999999999999999999999999 8877
Q ss_pred ----eEEEEecCC--CCCCCcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 ----~iayv~Q~p--wif~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++|++|+| .+++.|+.|||.++.. ..+ ++.+++++.++|.+... .....||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~ 146 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQK 146 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHH
Confidence 379999998 3778999999987632 122 34456667666654322 23568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
||++||||+.++|+++||||||++||+.+.+.+. +.++.+.+ ++|+|++||+++.+..||+|++|++|++++.|+++
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM-RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPS 225 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999987664 56766543 78999999999999889999999999999999999
Q ss_pred HHHh
Q 001505 805 DLIA 808 (1065)
Q Consensus 805 eL~~ 808 (1065)
++..
T Consensus 226 ~~~~ 229 (277)
T PRK13642 226 ELFA 229 (277)
T ss_pred HHhc
Confidence 9876
No 147
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-36 Score=334.90 Aligned_cols=201 Identities=27% Similarity=0.454 Sum_probs=169.7
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..++++|++++|+++ ..++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 6 ~~l~~~nl~~~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNS------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCC------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCcCCH
Confidence 358999999999743 2568999 99999999999999999999999999999999999998 8876
Q ss_pred -----eEEEEecCC--CCCCCcHHHHHhcCcc---cchH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -----~iayv~Q~p--wif~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++||+|+| .+++.|++|||.++.. ++.+ +.+++++..+|.+.+. .+..+|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~ 147 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQ 147 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHH
Confidence 379999998 4667899999988632 2222 3445566666654433 3457999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
|||++||||+.++|+++||||||++||+++.+.++ +.++.+.+ ++|+|++||+++.+..||+|++|++|++++.|+.
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK-KIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999987765 56666543 4899999999999889999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+++.+
T Consensus 227 ~~~~~ 231 (271)
T PRK13632 227 KEILN 231 (271)
T ss_pred HHHhc
Confidence 98875
No 148
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=331.04 Aligned_cols=202 Identities=26% Similarity=0.367 Sum_probs=169.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g---- 659 (1065)
.|+++|++++|++ .++|+| |+++++||+++|+|++|||||||+++|.|..++ ++|+| .++|
T Consensus 6 ~i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~~ 76 (253)
T PRK14261 6 ILSTKNLNLWYGE--------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI-LYNGENIM 76 (253)
T ss_pred eEEEeeeEEEECC--------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECCEEcc
Confidence 5899999999963 368999 999999999999999999999999999998753 48998 7765
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCccc----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|+|.+++.|++|||.|+... +. ++..++++..++.+++ .+..+..+.+
T Consensus 77 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~ 149 (253)
T PRK14261 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALS 149 (253)
T ss_pred ccccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhh
Confidence 37999999999999999999987432 11 1223344444444333 2446778889
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.++ .||+|++|++|++++
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l-~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKI-EDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998766 567777666799999999999986 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++.+
T Consensus 229 ~g~~~~~~~ 237 (253)
T PRK14261 229 FDKTTQIFE 237 (253)
T ss_pred cCCHHHHHh
Confidence 999999875
No 149
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.4e-36 Score=324.73 Aligned_cols=194 Identities=23% Similarity=0.397 Sum_probs=160.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++.. ...++++| |+++++||.++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDVK----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA-TVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCCC----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE-EECCEEcccCHHHH
Confidence 67899999997530 11268999 99999999999999999999999999999999999999 8876
Q ss_pred --eEEEEecCCCCCCC-cHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwif~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.++|++|+|.++.. |++|||.+... .+ +++.+++++..++.+ ....+..+||||||||+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-----------LLDRRVGGFSTGMRQKV 145 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhhhhhhcCHHHHHHH
Confidence 38999999999884 99999976432 11 223445555555543 33456678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
+||||++++|+++||||||++||+.+.+.+ .+.++.+. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRAL-REFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999997765 45666653 4789999999999875 59999999999998765
No 150
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=330.51 Aligned_cols=202 Identities=24% Similarity=0.346 Sum_probs=167.4
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g---- 659 (1065)
.++++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g~~i~ 74 (253)
T PRK14267 4 AIETVNLRVYYGS--------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV-RLFGRNIY 74 (253)
T ss_pred eEEEEeEEEEeCC--------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEEcc
Confidence 4889999999964 358999 999999999999999999999999999999987 49998 7765
Q ss_pred -----------eEEEEecCCCCCCC-cHHHHHhcCccc-----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 -----------KKAYVPQSSWIQTG-TIRENILFGKDM-----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~g-TIreNIlfG~~~-----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
.++|++|++.++.. |++||+.++... +. ++.+++++..++.++++ .......
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 147 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYP 147 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccCh
Confidence 37999999999865 999999875321 11 22334444444433322 2245667
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
.+||||||||++||||++++|+++||||||++||+.+.+.+ .+.|+.+.+++|+|++||+++.+. .||+|++|++|++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI-EELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999998766 456766656799999999999875 5999999999999
Q ss_pred EEecCHHHHHh
Q 001505 798 EQSGKYEDLIA 808 (1065)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1065)
++.|+.+++.+
T Consensus 227 ~~~~~~~~~~~ 237 (253)
T PRK14267 227 IEVGPTRKVFE 237 (253)
T ss_pred EEeCCHHHHHh
Confidence 99999999876
No 151
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=329.64 Aligned_cols=202 Identities=25% Similarity=0.327 Sum_probs=167.7
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g---- 659 (1065)
.++++|++++|++ .++++| |+++++||.++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV-YLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEECC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE-EECCEECC
Confidence 4889999999964 358999 999999999999999999999999999999974 69998 8876
Q ss_pred ---------eEEEEecCCCC-CCCcHHHHHhcCccc-----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 ---------KKAYVPQSSWI-QTGTIRENILFGKDM-----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 ---------~iayv~Q~pwi-f~gTIreNIlfG~~~-----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|+|-+ ++.|++||+.++... + +++.+++++.++|.+.++ ........+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGK 146 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCccc
Confidence 38999999975 578999999876421 1 123445566666543221 123445678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIE-SLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999987764 56666656899999999999875 699999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14247 226 WGPTREVFT 234 (250)
T ss_pred ECCHHHHHc
Confidence 999999876
No 152
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.3e-36 Score=325.64 Aligned_cols=191 Identities=29% Similarity=0.371 Sum_probs=157.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++.. ...+.+++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEGK----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV-LFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCCC----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEhhhcCHhH
Confidence 68899999996430 12468889 99999999999999999999999999999999999998 7765
Q ss_pred -------eEEEEecCCCCCC-CcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 -------KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 -------~iayv~Q~pwif~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
.++|++|+|.++. .|++||+.++.. ++ +++..++++..++++. .......||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 145 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGG 145 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHH
Confidence 3899999999885 699999987421 22 2234445555554432 33445689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhcCCEEEEEeCCEEE
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIE 798 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~ 798 (1065)
||||++||||++++|+++||||||++||+++.+.+ .+.++.+. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 146 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKII-FDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999998766 45676654 378999999999999889999999999985
No 153
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=333.51 Aligned_cols=203 Identities=20% Similarity=0.360 Sum_probs=169.5
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g--- 659 (1065)
..++++|+++.|++ .++++| ||+|++||+++|+|++|||||||+++|.|.++ |++|+| .++|
T Consensus 23 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~~~g~~~ 93 (271)
T PRK14238 23 VVFDTQNLNLWYGE--------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI-LYRDQNI 93 (271)
T ss_pred eEEEEeeeEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE-EECCEEc
Confidence 36999999999964 358999 99999999999999999999999999999987 699998 7766
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCccc----chH----HHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~----d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++|++|+|.+|..|++|||.++... +++ +..++++..++.+++. ......+.
T Consensus 94 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~ 166 (271)
T PRK14238 94 FDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAY 166 (271)
T ss_pred ccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcc
Confidence 38999999999999999999876321 111 1223333333332332 33566788
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~ 798 (1065)
+||||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+. .||+|++|++|+++
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKV-EELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH-HHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998766 456777766899999999999975 59999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+++++.+
T Consensus 246 ~~g~~~~~~~ 255 (271)
T PRK14238 246 EYDDTDKIFS 255 (271)
T ss_pred EeCCHHHHHc
Confidence 9999999876
No 154
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-36 Score=335.74 Aligned_cols=204 Identities=25% Similarity=0.385 Sum_probs=173.0
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|+.... ....++++| |++|++||+++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~~~--~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEE--STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV-YVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCC--CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeccccccH
Confidence 4889999999975300 002468999 99999999999999999999999999999999999998 8876
Q ss_pred -----eEEEEecCCC--CCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -----KKAYVPQSSW--IQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -----~iayv~Q~pw--if~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++||+|+|. +++.|++|||.|+.. .+ +++.+++++.++|.+.+... ..+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~ 149 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQ 149 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHH
Confidence 3799999984 677899999998732 12 24566777777876655443 36899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
|||++||||+.++|+++||||||++||+++.+.+. +.++.+. .++|+|+|||+++.+..||+|++|++|+|++.|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999988764 5676664 37899999999999988999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 99876
No 155
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-36 Score=328.17 Aligned_cols=197 Identities=26% Similarity=0.356 Sum_probs=163.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .++++| |+++++||.++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (242)
T PRK11124 3 IQLNGINCFYGA--------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEeeEEEECC--------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecccccccc
Confidence 789999999964 358999 99999999999999999999999999999999999998 7765
Q ss_pred ---------eEEEEecCCCCCC-CcHHHHHhcCc-c---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ---------KKAYVPQSSWIQT-GTIRENILFGK-D---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ---------~iayv~Q~pwif~-gTIreNIlfG~-~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|+|-++. .|++|||.++. + .. +++..+.++..++. ..+.....+|
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~L 142 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-----------PYADRFPLHL 142 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhC
Confidence 3799999999886 59999997431 1 11 12233344444443 3344455699
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
|||||||++||||++++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~ 221 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV-SIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999987664 5676654 47999999999999864 99999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+++++.+
T Consensus 222 ~~~~~~~~~ 230 (242)
T PRK11124 222 QGDASCFTQ 230 (242)
T ss_pred eCCHHHhcC
Confidence 999988754
No 156
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-36 Score=331.88 Aligned_cols=203 Identities=24% Similarity=0.382 Sum_probs=172.3
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g--- 659 (1065)
..|+++|++++|++ .++++| |++|++||+++|+|++|||||||+++|.|.++ |++|+| .++|
T Consensus 9 ~~l~i~~v~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~i 79 (264)
T PRK14243 9 TVLRTENLNVYYGS--------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV-TFHGKNL 79 (264)
T ss_pred eEEEEeeeEEEECC--------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE-EECCEEc
Confidence 35899999999963 368999 99999999999999999999999999999876 378998 7765
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCccc------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
+++|++|++.+++.|++|||.++... .+++.+++++.+++.+++.. .....+.+|
T Consensus 80 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~L 152 (264)
T PRK14243 80 YAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSL 152 (264)
T ss_pred cccccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccC
Confidence 38999999999999999999886431 12345556677777655432 245667899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEe-------
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK------- 793 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~------- 793 (1065)
|||||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.++ .||+|++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI-EELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccccccc
Confidence 99999999999999999999999999999999998765 567777766789999999999875 589999998
Q ss_pred --CCEEEEecCHHHHHh
Q 001505 794 --DGKIEQSGKYEDLIA 808 (1065)
Q Consensus 794 --~G~I~e~Gt~~eL~~ 808 (1065)
+|+|++.|+.+|+.+
T Consensus 232 ~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 232 GRYGYLVEFDRTEKIFN 248 (264)
T ss_pred ccCceEEEeCCHHHHHh
Confidence 899999999999976
No 157
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=330.88 Aligned_cols=195 Identities=27% Similarity=0.342 Sum_probs=165.8
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..|+++|++++|++ .++++| |++|++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 11 ~~l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGE--------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEECC--------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEHHHhhC
Confidence 45999999999964 358999 99999999999999999999999999999999999999 8877
Q ss_pred eEEEEecCCCCCC-CcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001505 660 KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1065)
Q Consensus 660 ~iayv~Q~pwif~-gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~ 737 (1065)
.++|++|++.++. .|++||+.++... .+++.+++++..+|.+. ...+..+||||||||++||||+.+
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhc
Confidence 4899999998886 7999999986421 23455666666666543 334567999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHH
Q 001505 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 738 ~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
+|+++||||||++||+.+.+.+. +.++.+. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999987664 5666653 3789999999999874 59999999999999988764
No 158
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-36 Score=333.52 Aligned_cols=200 Identities=25% Similarity=0.333 Sum_probs=168.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++. ..++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 7 ~l~i~~l~~~~~~~------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQYQSD------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEcCCC------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHH
Confidence 58999999999753 2458999 99999999999999999999999999999999999999 8887
Q ss_pred ----eEEEEecCCC--CCCCcHHHHHhcCccc---ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 ----KKAYVPQSSW--IQTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 ----~iayv~Q~pw--if~gTIreNIlfG~~~---d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++|++|+|+ +++.|+++|+.|+... +. ++.+++++..++.+.. ..+..+||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~ 148 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQK 148 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHH
Confidence 3799999995 5677899999887431 11 2334445555554322 234578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
||++||||++++|+++||||||++||+.+.+.+. +.++.+.+ ++|+|+|||+++.+..||+|++|++|++++.|+++
T Consensus 149 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 227 (269)
T PRK13648 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPT 227 (269)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999987764 56766543 78999999999998889999999999999999999
Q ss_pred HHHh
Q 001505 805 DLIA 808 (1065)
Q Consensus 805 eL~~ 808 (1065)
++.+
T Consensus 228 ~~~~ 231 (269)
T PRK13648 228 EIFD 231 (269)
T ss_pred HHhc
Confidence 9876
No 159
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.7e-36 Score=328.51 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=166.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|+++.|++ .+.++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 3 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 3 LYLEGLSVSFDG--------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV-LFGGTDLTGLPEHQ 73 (242)
T ss_pred EEEEeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCeecCCCCHHH
Confidence 789999999963 358999 99999999999999999999999999999999999998 8876
Q ss_pred ----eEEEEecCCCCCCC-cHHHHHhcCcccc---------------hHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 ----KKAYVPQSSWIQTG-TIRENILFGKDMR---------------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 ----~iayv~Q~pwif~g-TIreNIlfG~~~d---------------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++|++|++.++.+ |++||+.++...+ +++.++.++.. |.+.....+..
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~ 142 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAG 142 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChh
Confidence 28999999999986 9999998864211 12223333333 33334456677
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~ 798 (1065)
+||||||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.++. ||+|++|++|+++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l-~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKT-AELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999998766 4577776668999999999999865 9999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+++++..
T Consensus 222 ~~~~~~~~~~ 231 (242)
T TIGR03411 222 AEGSLDQVQA 231 (242)
T ss_pred eeCCHHHHhc
Confidence 9999999864
No 160
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.3e-36 Score=326.78 Aligned_cols=197 Identities=25% Similarity=0.388 Sum_probs=163.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK--------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI-LLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC--------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccCCHhH
Confidence 468999999964 358999 99999999999999999999999999999999999998 8876
Q ss_pred ----eEEEEecCCCCCCC-cHHHHHhcCccc---ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHH
Q 001505 660 ----KKAYVPQSSWIQTG-TIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1065)
Q Consensus 660 ----~iayv~Q~pwif~g-TIreNIlfG~~~---d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQ 727 (1065)
.++|++|++.++.+ |++||+.++.+. ++ ++.++.++.. |..........+|||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~q 140 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEF-----------HITHLRKSKASSLSGGERR 140 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHH
Confidence 28999999998876 999999875421 11 1222333333 3333445667799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHH
Q 001505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 728 RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
|++||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+ ..||+|++|++|++++.|++++
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 999999999999999999999999999977664 5666554 478999999999866 4599999999999999999998
Q ss_pred HHh
Q 001505 806 LIA 808 (1065)
Q Consensus 806 L~~ 808 (1065)
+..
T Consensus 220 ~~~ 222 (232)
T cd03218 220 IAA 222 (232)
T ss_pred hhc
Confidence 864
No 161
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=329.72 Aligned_cols=202 Identities=24% Similarity=0.351 Sum_probs=169.7
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g---- 659 (1065)
.++++|+++.|++ .+.++| |++|++||+++|+||+|||||||+++|.|..+| .+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~~~ 73 (249)
T PRK14253 3 KFNIENLDLFYGE--------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL-TMDGEDIY 73 (249)
T ss_pred eEEEeccEEEECC--------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCEEcc
Confidence 4789999999963 358999 999999999999999999999999999999886 58998 7766
Q ss_pred ----------eEEEEecCCCCCCCcHHHHHhcCccc----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ----------~iayv~Q~pwif~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|+|.+++.|++|||.++... ++ ++..++++..++.+++. +.......+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~L 146 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGL 146 (249)
T ss_pred cccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccC
Confidence 27999999999999999999876321 11 22334455555554442 3345667899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEe
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~ 800 (1065)
|||||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.++. ||+|++|++|+|++.
T Consensus 147 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI-EELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999997765 5577777667999999999999775 999999999999999
Q ss_pred cCHHHHHh
Q 001505 801 GKYEDLIA 808 (1065)
Q Consensus 801 Gt~~eL~~ 808 (1065)
|+.+++.+
T Consensus 226 g~~~~~~~ 233 (249)
T PRK14253 226 DDTQVIFS 233 (249)
T ss_pred CCHHHHHc
Confidence 99988864
No 162
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4e-36 Score=333.28 Aligned_cols=199 Identities=26% Similarity=0.330 Sum_probs=165.8
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..|+++|+++.|++ .++++| ||+|++|++++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 6 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRGN--------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI-LFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccCh
Confidence 35899999999963 358999 99999999999999999999999999999999999998 8776
Q ss_pred --------eEEEEecCCCCCCC-cHHHHHhcCcc----cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 660 --------KKAYVPQSSWIQTG-TIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 660 --------~iayv~Q~pwif~g-TIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
.++|++|++.++++ |++|||.++.. .++ ++..+.++..++.+. ...+..+||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS 145 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELS 145 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCC
Confidence 37999999999875 99999987521 222 223344454444322 223446899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
||||||++||||+.++|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL-VKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 9999999999999999999999999999999997765 456766543 7899999999998765 99999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+++++.+
T Consensus 225 ~g~~~~~~~ 233 (269)
T PRK11831 225 HGSAQALQA 233 (269)
T ss_pred eCCHHHHhc
Confidence 999999886
No 163
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=337.33 Aligned_cols=203 Identities=25% Similarity=0.357 Sum_probs=165.7
Q ss_pred ccEEEeeeEEEecccccccCC--CcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC------
Q 001505 589 VAIDIEAGEYAWDAREENFKK--PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~--~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------ 659 (1065)
+.|+++|++++|++. . ..++++| |+++++||.++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 5 ~~l~i~nl~~~~~~~-----~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~ 78 (289)
T PRK13645 5 KDIILDNVSYTYAKK-----TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPAN 78 (289)
T ss_pred ceEEEEEEEEEeCCC-----CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccc
Confidence 469999999999753 1 1358999 99999999999999999999999999999999999998 7765
Q ss_pred ------------eEEEEecCCC--CCCCcHHHHHhcCccc---chH----HHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 ------------KKAYVPQSSW--IQTGTIRENILFGKDM---RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 ------------~iayv~Q~pw--if~gTIreNIlfG~~~---d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
.++|++|+|. +++.|++|||.|+... +.+ +.+++++..+| |.+ ......
T Consensus 79 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~---~~~~~~ 148 (289)
T PRK13645 79 LKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PED---YVKRSP 148 (289)
T ss_pred ccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Chh---HhcCCh
Confidence 3799999984 6788999999986431 111 12233333333 211 134566
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCC
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G 795 (1065)
.+||||||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+ ++|+|+|||+++.+. .||+|++|++|
T Consensus 149 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 227 (289)
T PRK13645 149 FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDF-INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG 227 (289)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999998766 456666543 789999999999864 59999999999
Q ss_pred EEEEecCHHHHHh
Q 001505 796 KIEQSGKYEDLIA 808 (1065)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1065)
++++.|+.+++.+
T Consensus 228 ~i~~~g~~~~~~~ 240 (289)
T PRK13645 228 KVISIGSPFEIFS 240 (289)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999999875
No 164
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=332.35 Aligned_cols=203 Identities=23% Similarity=0.365 Sum_probs=170.2
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g--- 659 (1065)
..++++|++++|++ .++++| ||+|++||+++|+|++|||||||+++|.|.++ |++|+| .++|
T Consensus 12 ~~l~i~nl~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v-~~~g~~i 82 (269)
T PRK14259 12 IIISLQNVTISYGT--------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV-LFDGTDL 82 (269)
T ss_pred ceEEEEeEEEEECC--------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEc
Confidence 46999999999964 358999 99999999999999999999999999999987 589998 7765
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCccc---c---hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM---R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~---d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|++.++..|++||+.++... + +++.+++++.+++...+ .+.......+|
T Consensus 83 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~L 155 (269)
T PRK14259 83 YDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSL 155 (269)
T ss_pred ccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccC
Confidence 38999999999989999999987532 1 23344555555553322 23345667899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchh-hcCCEEEEEeC------
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKD------ 794 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l-~~aD~Ilvl~~------ 794 (1065)
|||||||++||||++++|+++||||||++||+.+.+++ .+.++.+.+++|+|++||+++.+ ..||+|++|++
T Consensus 156 S~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l-~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKI-EETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccc
Confidence 99999999999999999999999999999999998776 45677666679999999999987 46999999996
Q ss_pred -----CEEEEecCHHHHHh
Q 001505 795 -----GKIEQSGKYEDLIA 808 (1065)
Q Consensus 795 -----G~I~e~Gt~~eL~~ 808 (1065)
|+|++.|+.+++.+
T Consensus 235 ~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 235 SGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cccccceEEEeCCHHHHHh
Confidence 67999999999876
No 165
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-36 Score=331.56 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=173.4
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC--
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g-- 659 (1065)
.+.|+++|++++|++ .++++| |++|++||+++|+|++|||||||+++|.|+.+| ++|+| .++|
T Consensus 14 ~~~l~~~~l~~~~~~--------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i-~~~g~~ 84 (265)
T PRK14252 14 QQKSEVNKLNFYYGG--------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI-ILHPDN 84 (265)
T ss_pred CceEEEEEEEEEECC--------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE-EEcCcc
Confidence 356999999999963 368999 999999999999999999999999999999875 78998 7654
Q ss_pred ---------------eEEEEecCCCCCCCcHHHHHhcCcc--------cchHHHHHHHHHhcchHHHHhhcCCCCccccC
Q 001505 660 ---------------KKAYVPQSSWIQTGTIRENILFGKD--------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1065)
Q Consensus 660 ---------------~iayv~Q~pwif~gTIreNIlfG~~--------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe 716 (1065)
.++|++|++.++++|++|||.++.. ..+++..++++.+++.+++. +..+.
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~ 157 (265)
T PRK14252 85 VNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGD 157 (265)
T ss_pred ccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhC
Confidence 3899999999999999999987632 11345566777776654443 34566
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCC
Q 001505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G 795 (1065)
...+||||||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+++|+|+|||+++.+. .||+|++|++|
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l-~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G 236 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 7889999999999999999999999999999999999997766 456766656789999999999985 59999999999
Q ss_pred EEEEecCHHHHHh
Q 001505 796 KIEQSGKYEDLIA 808 (1065)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1065)
+|++.|+++++..
T Consensus 237 ~i~~~g~~~~~~~ 249 (265)
T PRK14252 237 ELIEFGATDTIFI 249 (265)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999875
No 166
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.7e-36 Score=325.93 Aligned_cols=196 Identities=24% Similarity=0.385 Sum_probs=164.4
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..|+++|+++.|++ .++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 6 ~~i~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~ 76 (225)
T PRK10247 6 PLLQLQNVGYLAGD--------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLKP 76 (225)
T ss_pred ceEEEeccEEeeCC--------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE-EECCEEcCcCCH
Confidence 35899999999963 358999 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCCCCCCCcHHHHHhcCccc-----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 -----KKAYVPQSSWIQTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 -----~iayv~Q~pwif~gTIreNIlfG~~~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.++|++|++.+++.|++||+.++..+ ++++.+++++..++.+ +.......+||||||||+
T Consensus 77 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv 146 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRI 146 (225)
T ss_pred HHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHH
Confidence 38999999999999999999875321 2223344444444421 234566789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhcCCEEEEEe-CCEEEEecCHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDAADLVLVMK-DGKIEQSGKYE 804 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~-~G~I~e~Gt~~ 804 (1065)
+||||++++|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++.++.||+|++|+ ++..+++|+|+
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNV-NEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999997655 55676654 3789999999999999999999995 77788889985
No 167
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.5e-36 Score=330.85 Aligned_cols=200 Identities=26% Similarity=0.382 Sum_probs=167.4
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
+.++++|+++.|++ .+.++| |+++++||+++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 4 ~~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~ 74 (257)
T PRK10619 4 NKLNVIDLHKRYGE--------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI-VVNGQTINLVRD 74 (257)
T ss_pred ccEEEeeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcccccc
Confidence 46999999999964 358999 99999999999999999999999999999999999998 7776
Q ss_pred ------------------eEEEEecCCCCCC-CcHHHHHhcCc----ccc----hHHHHHHHHHhcchHHHHhhcCCCCc
Q 001505 660 ------------------KKAYVPQSSWIQT-GTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLS 712 (1065)
Q Consensus 660 ------------------~iayv~Q~pwif~-gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T 712 (1065)
.++|++|++.++. .|++||+.++. ..+ +++..++++..++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------- 145 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA--------- 145 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh---------
Confidence 3799999999986 59999998742 111 12333444444443221
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEE
Q 001505 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVL 790 (1065)
Q Consensus 713 ~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Il 790 (1065)
......+||||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.++. ||+|+
T Consensus 146 -~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 146 -QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred -hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 14556799999999999999999999999999999999999987765 5666654 47999999999999885 99999
Q ss_pred EEeCCEEEEecCHHHHHh
Q 001505 791 VMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 791 vl~~G~I~e~Gt~~eL~~ 808 (1065)
+|++|++++.|+++++.+
T Consensus 224 ~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred EEECCEEEEeCCHHHhhh
Confidence 999999999999999875
No 168
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=329.60 Aligned_cols=202 Identities=29% Similarity=0.416 Sum_probs=169.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g---- 659 (1065)
.|+++|+++.|++ .+.++| |+++++||+++|+|++|||||||+++|.|.++| .+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~i~g~~~~ 73 (250)
T PRK14262 3 IIEIENFSAYYGE--------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI-YFKGQDIY 73 (250)
T ss_pred eEEEEeeEEEeCC--------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECCEEcc
Confidence 4889999999963 368899 999999999999999999999999999999874 89998 7765
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCccc----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|+|.++..|++||+.++... .+ ++.+++++..++.++++ +....+..+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 146 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTR 146 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhh
Confidence 38999999999999999999876321 11 12334444455544332 234667889
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchh-hcCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+.+...+ .+.++.+.+++|+|++||+++.+ ..||+|++|++|++++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI-EKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998765 56777766679999999999976 4599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++.+
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14262 226 YGPTREIVE 234 (250)
T ss_pred ecCHHHHHh
Confidence 999999875
No 169
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.6e-36 Score=327.38 Aligned_cols=197 Identities=28% Similarity=0.414 Sum_probs=165.0
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFGP--------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEECC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCChhH
Confidence 678999999963 358999 99999999999999999999999999999999999998 8776
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCcc----cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|++.++. .|++||+.++.. .+. ++..++++..+|+ .....+...|||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~ 141 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-----------ERAHHYPSELSGGQ 141 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------HHHhcChhhcCHHH
Confidence 3799999998875 699999988631 122 2233444444443 33344557899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~ 803 (1065)
|||++||||++++|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++.++. ||+|++|++|++++.|++
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCH
Confidence 99999999999999999999999999999987664 5676654 47999999999999864 999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+++.+
T Consensus 221 ~~~~~ 225 (240)
T PRK09493 221 QVLIK 225 (240)
T ss_pred HHHhc
Confidence 99875
No 170
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-36 Score=334.59 Aligned_cols=203 Identities=26% Similarity=0.404 Sum_probs=166.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++.. ....++++| |++|++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~~~---~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~~ 78 (280)
T PRK13649 3 INLQNVSYTYQAGT---PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV-RVDDTLITSTSKNK 78 (280)
T ss_pred EEEEEEEEEcCCCC---ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 78999999997530 001368999 99999999999999999999999999999999999999 8876
Q ss_pred -------eEEEEecCC--CCCCCcHHHHHhcCcc---cchH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 -------KKAYVPQSS--WIQTGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 -------~iayv~Q~p--wif~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
.++|++|+| .+++.|++|||.|+.. .+.+ +.+++++..+|.++ ....+..+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 148 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSG 148 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCH
Confidence 279999998 6888999999987632 2222 22334444444321 12455678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
|||||++||||++++|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 149 GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM-TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999977664 5666554 3789999999999885 59999999999999999
Q ss_pred CHHHHHh
Q 001505 802 KYEDLIA 808 (1065)
Q Consensus 802 t~~eL~~ 808 (1065)
+.+++.+
T Consensus 228 ~~~~~~~ 234 (280)
T PRK13649 228 KPKDIFQ 234 (280)
T ss_pred CHHHHhc
Confidence 9999875
No 171
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.4e-36 Score=323.71 Aligned_cols=187 Identities=28% Similarity=0.386 Sum_probs=156.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|+.. .++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~~-------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG-------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI-RVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC-------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHH
Confidence 4689999999643 468999 99999999999999999999999999999999999998 7776
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|+|.++. .|++|||.++... + +++.++.++.+++++.+.. ...+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~ 141 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGE 141 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHH
Confidence 2799999999887 5999999876321 1 2345566666666544333 335899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEE
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I 797 (1065)
|||++||||++++|+++||||||++||+++.+.+ .+.++.+. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 142 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI-MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999998766 45666653 47999999999999875 899999999974
No 172
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.5e-36 Score=309.68 Aligned_cols=160 Identities=29% Similarity=0.456 Sum_probs=145.5
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEecC
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~Q~ 667 (1065)
|+++|++++|+++ ++.++| |+++++||+++|+|++|||||||+++|+|+++|.+|+| .++| +++|++|+
T Consensus 1 i~~~~~~~~~~~~-------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDG-------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCC-------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCCceEEEECCC
Confidence 4689999999643 468999 99999999999999999999999999999999999999 8987 79999999
Q ss_pred CCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001505 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1065)
Q Consensus 668 pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp 747 (1065)
++++++|++|||.++ +...||||||||++||||++++|+++|||||
T Consensus 73 ~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEP 118 (166)
T cd03223 73 PYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEA 118 (166)
T ss_pred CccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999874 3578999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCC
Q 001505 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1065)
Q Consensus 748 ~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G 795 (1065)
|++||+++.+.+. +.++.+ ++|+|++||+.+....||+|++|++|
T Consensus 119 t~~LD~~~~~~l~-~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 119 TSALDEESEDRLY-QLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred ccccCHHHHHHHH-HHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999987764 456654 68999999999988899999999875
No 173
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-36 Score=311.91 Aligned_cols=207 Identities=25% Similarity=0.397 Sum_probs=172.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.|+++|++-.||++ ...|+| |++|++||.|||+|+|||||||||++|.|..+|++|+| .++|
T Consensus 3 ~i~~~nl~k~yp~~-------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i-~~~g~~i~~~~~k 74 (258)
T COG3638 3 MIEVKNLSKTYPGG-------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI-LFNGVQITKLKGK 74 (258)
T ss_pred eEEEeeeeeecCCC-------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE-EecccchhccchH
Confidence 58999999999865 678999 99999999999999999999999999999999999999 8887
Q ss_pred -------eEEEEecCCCC-CCCcHHHHHhcCcc------------cchHHHHHHHH---HhcchHHHHhhcCCCCccccC
Q 001505 660 -------KKAYVPQSSWI-QTGTIRENILFGKD------------MRQSFYEEVLE---GCALNQDIEMWADGDLSVVGE 716 (1065)
Q Consensus 660 -------~iayv~Q~pwi-f~gTIreNIlfG~~------------~d~~~y~~vl~---ac~L~~di~~Lp~Gd~T~IGe 716 (1065)
++||++|++-| ...|+-+|++.|+- +.++....+++ ..++.+. --.
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~q 143 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQ 143 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHH
Confidence 48999999886 46799999998852 23444444433 3333332 234
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh--cCCcEEEEEcCCcchh-hcCCEEEEEe
Q 001505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFL-DAADLVLVMK 793 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l--l~~kTvIlVTH~l~~l-~~aD~Ilvl~ 793 (1065)
|-.+|||||+|||+|||||+++|+|+|=|||+|+||+.+++++++ .++.+ -.|.|+|+.-|++++. ++||||+-|+
T Consensus 144 ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~-~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 144 RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD-ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence 667999999999999999999999999999999999999999876 44433 3479999999999995 6799999999
Q ss_pred CCEEEEecCHHHHHhhcchHHHHHHH
Q 001505 794 DGKIEQSGKYEDLIADQNSELVRQMK 819 (1065)
Q Consensus 794 ~G~I~e~Gt~~eL~~~~~~~~~~l~~ 819 (1065)
+|+|+..|+.+|+-+ ..+.+...
T Consensus 223 ~G~ivfDg~~~el~~---~~~~~iYg 245 (258)
T COG3638 223 AGRIVFDGPASELTD---EALDEIYG 245 (258)
T ss_pred CCcEEEeCChhhhhH---HHHHHHhc
Confidence 999999999999754 34444443
No 174
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-36 Score=333.19 Aligned_cols=204 Identities=25% Similarity=0.383 Sum_probs=170.9
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC--
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g-- 659 (1065)
+..|+++|++++|++ .++++| |++|++||+++|+|++|||||||+++|.|.++ |.+|+| .++|
T Consensus 37 ~~~l~i~~l~~~~~~--------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I-~i~G~~ 107 (285)
T PRK14254 37 ETVIEARDLNVFYGD--------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL-TFRGKN 107 (285)
T ss_pred CceEEEEEEEEEECC--------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECCEE
Confidence 346999999999963 358999 99999999999999999999999999999987 689998 7765
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCccc------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|++.++..|++|||.++... .+++.+++++..++.+.++. ....+..+
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~ 180 (285)
T PRK14254 108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLD 180 (285)
T ss_pred ccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCccc
Confidence 37999999999999999999875321 13345566666666443321 24567789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEE-EEeCCEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVL-VMKDGKIE 798 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Il-vl~~G~I~ 798 (1065)
||||||||++||||++++|+|+||||||++||+.+.+.+ .+.|+.+.+++|+|++||+++.+.. ||+++ +|++|+|+
T Consensus 181 LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l-~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKI-EDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV 259 (285)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE
Confidence 999999999999999999999999999999999998766 4567776667899999999999765 99975 57999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+.+++.+
T Consensus 260 ~~g~~~~~~~ 269 (285)
T PRK14254 260 EFDDTDKIFE 269 (285)
T ss_pred EeCCHHHHHh
Confidence 9999999875
No 175
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-36 Score=327.47 Aligned_cols=198 Identities=27% Similarity=0.452 Sum_probs=164.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|+++.|++ .+.++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ--------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI-RLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC--------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHHH
Confidence 468999999964 368999 99999999999999999999999999999999999999 8876
Q ss_pred ----eEEEEecCCCCCCC-cHHHHHhcCccc-c---hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 ----KKAYVPQSSWIQTG-TIRENILFGKDM-R---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 ----~iayv~Q~pwif~g-TIreNIlfG~~~-d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|++.++.. |++||+.++... . ++.++++++..+ +..........+||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~ 141 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLA 141 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHH
Confidence 38999999999876 999999876432 1 122233333322 1122345566789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHH
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
||||++++|+++||||||++||+.+.+.+ .+.+..+.+ ++|+|++||+++.++. ||+|++|++|++++.|+.+++.
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHH-HHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999998766 456666543 7899999999999875 9999999999999999999874
Q ss_pred h
Q 001505 808 A 808 (1065)
Q Consensus 808 ~ 808 (1065)
.
T Consensus 221 ~ 221 (230)
T TIGR03410 221 E 221 (230)
T ss_pred h
Confidence 3
No 176
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.5e-36 Score=325.61 Aligned_cols=198 Identities=30% Similarity=0.387 Sum_probs=156.4
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++.. ...++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~v~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTGG----GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI-IFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCCC----cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEccccchhh
Confidence 68899999996430 01268999 99999999999999999999999999999999999998 7765
Q ss_pred ------eEEEEecCCC--C-CCCcHHHHHhcCccc-----chHHHHHHHHHhcchHHHHhhcCCCC-ccccCCCCCCCHH
Q 001505 660 ------KKAYVPQSSW--I-QTGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDL-SVVGERGINLSGG 724 (1065)
Q Consensus 660 ------~iayv~Q~pw--i-f~gTIreNIlfG~~~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~-T~IGe~G~nLSGG 724 (1065)
.++|++|+|. + .+.|++|||.++... +++..+++. .+.++.+ |.. .....+..+||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G 149 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGG 149 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHH
Confidence 3899999993 3 368999999865221 111111111 1122222 221 2345667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQI-LDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999997765 456766543 789999999999987 69999999999998765
No 177
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-36 Score=331.64 Aligned_cols=199 Identities=23% Similarity=0.310 Sum_probs=168.2
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..++++|++++|++ .++++| ||++++||+++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 10 ~~l~i~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~ 80 (265)
T PRK10575 10 TTFALRNVSFRVPG--------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWSS 80 (265)
T ss_pred ceEEEeeEEEEECC--------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEehhhCCH
Confidence 46999999999963 358999 99999999999999999999999999999999999999 8887
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCcc-----------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKD-----------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~-----------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
.++|++|++-++. .|++||+.++.. .++++.+++++.+++.+.+... ..+||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS 149 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLS 149 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCC
Confidence 3899999976654 599999987531 1223456677777775444333 34799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||++||||+..+|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|++||+++.+. .||+|++|++|+|++
T Consensus 150 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~-~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 150 GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDV-LALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 9999999999999999999999999999999998765 456766542 789999999999985 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+|+..
T Consensus 229 ~~~~~~~~~ 237 (265)
T PRK10575 229 QGTPAELMR 237 (265)
T ss_pred ecCHHHhcC
Confidence 999998865
No 178
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-36 Score=323.13 Aligned_cols=195 Identities=26% Similarity=0.422 Sum_probs=166.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|+.. + .| |+++++||.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~~--------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHHL--------P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL-TLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEECCc--------c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCeecCcCChhh
Confidence 6899999999632 1 26 99999999999999999999999999999999999999 8877
Q ss_pred -eEEEEecCCCCCCC-cHHHHHhcCcc-------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -KKAYVPQSSWIQTG-TIRENILFGKD-------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -~iayv~Q~pwif~g-TIreNIlfG~~-------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|++-++.+ |++|||.++.. .++++..++++..++.+.+...| ..||||||||++
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 139 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVA 139 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHH
Confidence 38999999998875 99999987531 12344566777777766555444 479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHH
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
||||+.++|+++||||||++||+.+.+.+. +.++.+.+ ++|+|++||+++.++. ||+|++|++|++++.|+++++.
T Consensus 140 laral~~~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEML-TLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999987664 56666543 7899999999999865 9999999999999999999988
Q ss_pred h
Q 001505 808 A 808 (1065)
Q Consensus 808 ~ 808 (1065)
+
T Consensus 219 ~ 219 (232)
T PRK10771 219 S 219 (232)
T ss_pred h
Confidence 6
No 179
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.8e-36 Score=328.44 Aligned_cols=197 Identities=28% Similarity=0.378 Sum_probs=165.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|+++.|++ .++++| ||+|++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI--------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI-QVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC--------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 478999999963 368999 99999999999999999999999999999999999998 7765
Q ss_pred ----------------eEEEEecCCCCCC-CcHHHHHhcCcc----cc----hHHHHHHHHHhcchHHHHhhcCCCCccc
Q 001505 660 ----------------KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVV 714 (1065)
Q Consensus 660 ----------------~iayv~Q~pwif~-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~I 714 (1065)
.++|++|++.++. .|++||+.++.. .+ +++..+.++..++.+ ..
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~ 140 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-----------KA 140 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------Hh
Confidence 3899999998884 899999987531 11 123444555554433 33
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEE
Q 001505 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLV 791 (1065)
Q Consensus 715 Ge~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilv 791 (1065)
......||||||||++||||+.++|+++||||||++||+.+...+. +.++.+.+ ++|+|+|||+++.+. .||++++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T TIGR03005 141 DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL-NVIRRLASEHDLTMLLVTHEMGFAREFADRVCF 219 (252)
T ss_pred hcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 4456789999999999999999999999999999999999977664 56766543 789999999999985 5999999
Q ss_pred EeCCEEEEecCHHHHHh
Q 001505 792 MKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 792 l~~G~I~e~Gt~~eL~~ 808 (1065)
|++|++++.|+++++.+
T Consensus 220 l~~G~i~~~g~~~~~~~ 236 (252)
T TIGR03005 220 FDKGRIVEQGKPDEIFR 236 (252)
T ss_pred EECCEEEEeCCHHHHhc
Confidence 99999999999999875
No 180
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-36 Score=327.72 Aligned_cols=203 Identities=22% Similarity=0.346 Sum_probs=170.2
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc--C---CCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~--~---~~G~i~~v~g--- 659 (1065)
+.|+++|++++|++ .++++| |++|++||.++|+|++|||||||+++|.|+++ | ++|+| .++|
T Consensus 3 ~~l~~~nl~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~i 73 (252)
T PRK14256 3 NKVKLEQLNVHFGK--------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI-LLDDTDI 73 (252)
T ss_pred cEEEEEEEEEEeCC--------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE-EECCEEc
Confidence 46899999999963 358999 99999999999999999999999999999986 3 58998 7766
Q ss_pred ------------eEEEEecCCCCCC-CcHHHHHhcCcc----cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 ------------KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
.++|++|++.++. .|++|||.++.. .+ +++.++.++.+++.+.++. ..+..+
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~ 146 (252)
T PRK14256 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNA 146 (252)
T ss_pred ccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCc
Confidence 2899999999887 699999987521 12 2344566666666543322 223457
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
.+||||||||++||||++.+|+++||||||++||+.+.+.+ .+.++.+.+++|+|+|||+++.++ .||+|++|++|+|
T Consensus 147 ~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI-EELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDL 225 (252)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 79999999999999999999999999999999999997766 456777766799999999999985 5999999999999
Q ss_pred EEecCHHHHHh
Q 001505 798 EQSGKYEDLIA 808 (1065)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1065)
++.|+.+++..
T Consensus 226 ~~~~~~~~~~~ 236 (252)
T PRK14256 226 VECGETKKIFT 236 (252)
T ss_pred EEeCCHHHHHh
Confidence 99999999876
No 181
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.3e-36 Score=344.69 Aligned_cols=192 Identities=31% Similarity=0.477 Sum_probs=160.6
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------------------eEEEEecCC
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------------KKAYVPQSS 668 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------------------~iayv~Q~p 668 (1065)
...++| ||+|++||+++|+|++|||||||+++|.|+++|++|+| .++| +++||+|++
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 356788 99999999999999999999999999999999999999 8876 389999999
Q ss_pred CCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001505 669 WIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1065)
Q Consensus 669 wif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ad 740 (1065)
.+++ .|++|||.||..+ + +++.+++++..+|.+..+. ...+||||||||++||||++++|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9997 7999999987432 1 2344566666666544332 335799999999999999999999
Q ss_pred EEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHHHHhhcchHHH
Q 001505 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIADQNSELV 815 (1065)
Q Consensus 741 IlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~ 815 (1065)
|+||||||||||+.+.+.+. +.+..+.+ ++|+|+|||+++.+ ..||+|++|+||++++.|+.+|+..++...|.
T Consensus 185 ILLlDEPts~LD~~~r~~l~-~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQ-DELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEEEECCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999988775 45555543 79999999999986 66999999999999999999999863333343
No 182
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-36 Score=333.48 Aligned_cols=198 Identities=27% Similarity=0.431 Sum_probs=167.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|+.+ .++++| |++|++||.++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYPDG-------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV-LIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeCCC-------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEECccccchH
Confidence 6899999999643 458999 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -----KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -----~iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|+| .+++.|++|||.++.. .+ +++..++++.++|.+.. .....+|||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq 142 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQ 142 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHH
Confidence 279999997 6888999999988642 11 13445566666664221 12346899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
|||++||||+..+|+++||||||++||+.+...+. +.++.+. +++|+|+|||+++.+. .||+|++|++|++++.|+.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 221 (275)
T PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM-KLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999987764 5676654 3799999999999986 5999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+++.+
T Consensus 222 ~~~~~ 226 (275)
T PRK13639 222 KEVFS 226 (275)
T ss_pred HHHhc
Confidence 99876
No 183
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-36 Score=327.95 Aligned_cols=202 Identities=25% Similarity=0.372 Sum_probs=171.7
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g---- 659 (1065)
.++++|++++|++ .++++| |++|++||+++|+|++|||||||+++|.|..+ |++|+| .++|
T Consensus 3 ~l~~~~v~~~~~~--------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g~~i~ 73 (250)
T PRK14266 3 RIEVENLNTYFDD--------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI-YLDGVDIY 73 (250)
T ss_pred EEEEEeEEEEeCC--------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEE-EECCEEcc
Confidence 4789999999963 358999 99999999999999999999999999999864 389998 7766
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCcc----cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|+|++|+.|++|||.++.. .+ ++++.+.++.+++.++++.+ ..+.+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~ 146 (250)
T PRK14266 74 DPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALG 146 (250)
T ss_pred cccccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCccc
Confidence 3899999999999999999987531 12 23456677777876665432 3456789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.+.. +|+|++|++|++++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI-EDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence 999999999999999999999999999999999997766 5667776668999999999998765 89999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+++++..
T Consensus 226 ~g~~~~~~~ 234 (250)
T PRK14266 226 SGLTDQIFI 234 (250)
T ss_pred eCCHHHHHh
Confidence 999999875
No 184
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-36 Score=334.50 Aligned_cols=204 Identities=24% Similarity=0.386 Sum_probs=168.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~-------- 660 (1065)
.|+++|++++|++.. ....++++| |+++++||+++|+||+|||||||+++|.|.++|++|+| .++|.
T Consensus 2 ~i~~~~l~~~~~~~~---~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGT---PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI-TIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCC---CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECcccccc
Confidence 378999999997420 001468999 99999999999999999999999999999999999998 88762
Q ss_pred ---------EEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 661 ---------KAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 661 ---------iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
++|++|+| .+++.|++|||.|+.. .+ +++.+++++.++|..+. ...+..+||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LS 147 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELS 147 (287)
T ss_pred chHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCC
Confidence 79999998 5788999999987642 21 22345556666654222 234467899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEe
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~ 800 (1065)
||||||++||||+..+|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++.+. .||+|++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l-~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM-MQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999997765 55676654 4789999999999875 6999999999999999
Q ss_pred cCHHHHHh
Q 001505 801 GKYEDLIA 808 (1065)
Q Consensus 801 Gt~~eL~~ 808 (1065)
|+.+++.+
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13641 227 ASPKEIFS 234 (287)
T ss_pred CCHHHHhc
Confidence 99999875
No 185
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=7.9e-36 Score=327.54 Aligned_cols=198 Identities=28% Similarity=0.392 Sum_probs=164.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ .++++| |+++++|++++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG--------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-RVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccccc
Confidence 3789999999963 358999 99999999999999999999999999999999999998 7654
Q ss_pred ------------eEEEEecCCCCCC-CcHHHHHhcCcc----cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 ------------KKAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~-gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
.++||+|++.++. .|++||+.++.. .+. ++.+++++..++. .......
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~ 142 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYP 142 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCCh
Confidence 3799999998885 799999987521 111 2233334433332 2234567
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~ 796 (1065)
.+||||||||++||||+..+|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL-NTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGR 221 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 899999999999999999999999999999999999987664 5666654 37899999999999865 99999999999
Q ss_pred EEEecCHHHHHh
Q 001505 797 IEQSGKYEDLIA 808 (1065)
Q Consensus 797 I~e~Gt~~eL~~ 808 (1065)
+++.|+.+++.+
T Consensus 222 i~~~~~~~~~~~ 233 (250)
T PRK11264 222 IVEQGPAKALFA 233 (250)
T ss_pred EEEeCCHHHHhc
Confidence 999999999875
No 186
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.9e-36 Score=329.48 Aligned_cols=206 Identities=25% Similarity=0.318 Sum_probs=165.6
Q ss_pred EEEeeeEEEecccccc-cCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 591 IDIEAGEYAWDAREEN-FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~-~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
++++|++++|++.... ...+.++++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 81 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV-SFRGQDLYQLDRK 81 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEccccCHH
Confidence 7899999999642000 0012568999 99999999999999999999999999999999999998 8776
Q ss_pred -------eEEEEecCCC--CC-CCcHHHHHhcCcc----cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 -------KKAYVPQSSW--IQ-TGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 -------~iayv~Q~pw--if-~gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|+|. ++ +.|++|||.++.. +++ ++..++++..++.+ .....++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 3899999983 43 5799999975421 221 23334444444421 1234567799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~ 798 (1065)
|||||||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|+|||+++.+. .||+|++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVI-LELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 99999999999999999999999999999999997765 456766643 789999999999986 59999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+++++..
T Consensus 231 ~~g~~~~~~~ 240 (265)
T TIGR02769 231 EECDVAQLLS 240 (265)
T ss_pred EECCHHHHcC
Confidence 9999999986
No 187
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-36 Score=346.17 Aligned_cols=206 Identities=26% Similarity=0.402 Sum_probs=168.8
Q ss_pred cEEEeeeEEEecccccc----------------cCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCC
Q 001505 590 AIDIEAGEYAWDAREEN----------------FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG 652 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~----------------~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G 652 (1065)
.|+++|++..|.+.... .....+.++| ||+|++||+++|+||+|||||||+++|.|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 47778887777654210 0011246888 999999999999999999999999999999999999
Q ss_pred cEEEECC-----------------eEEEEecCCCCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhc
Q 001505 653 AAIKVHG-----------------KKAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWA 707 (1065)
Q Consensus 653 ~i~~v~g-----------------~iayv~Q~pwif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp 707 (1065)
+| .++| +++||+|++.+|. .|++|||.|+..+ + +++..++++.++|.+.....|
T Consensus 84 ~I-~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 84 QV-LIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred EE-EECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 99 8876 3899999999985 6999999986421 2 234556677777765444433
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-
Q 001505 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD- 784 (1065)
Q Consensus 708 ~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~- 784 (1065)
.+||||||||++||||++.+|+++|||||||+||+.+.+.+ .+.+..+. .++|+|+|||+++.+.
T Consensus 163 -----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l-~~~L~~l~~~~g~TIIivTHd~~~~~~ 230 (400)
T PRK10070 163 -----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM-QDELVKLQAKHQRTIVFISHDLDEAMR 230 (400)
T ss_pred -----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHH-HHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 58999999999999999999999999999999999998776 45566553 4799999999999874
Q ss_pred cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 785 AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 785 ~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
.||+|++|++|+|++.|+++++..
T Consensus 231 ~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 231 IGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred hCCEEEEEECCEEEecCCHHHHHh
Confidence 599999999999999999999986
No 188
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-36 Score=320.35 Aligned_cols=190 Identities=26% Similarity=0.447 Sum_probs=158.0
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------e
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------~ 660 (1065)
++++|+++.|++ .++++| |+++++||+++|+||+|||||||+++|.|.++|.+|+| .++| .
T Consensus 1 l~~~~l~~~~~~--------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR--------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV-LFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCCchhHHHHcc
Confidence 468999999963 358889 99999999999999999999999999999999999999 8887 4
Q ss_pred EEEEecCCCCCC-CcHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 661 KAYVPQSSWIQT-GTIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 661 iayv~Q~pwif~-gTIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
++|++|++.++. .|++||+.++... + +++.++.++..++.+ .......+||||||||++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHH
Confidence 899999998886 5999999875321 1 223344444444433 33445678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
||++++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLK-DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999987765 4565543 4789999999999875 49999999999998765
No 189
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=332.29 Aligned_cols=203 Identities=24% Similarity=0.331 Sum_probs=170.1
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g--- 659 (1065)
..++++|++++|+. .++++| ||+|++||+++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 20 ~~l~i~nl~~~~~~--------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i 90 (276)
T PRK14271 20 PAMAAVNLTLGFAG--------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV-LLGGRSI 90 (276)
T ss_pred cEEEEeeEEEEECC--------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE-EECCEEc
Confidence 35899999999964 368999 999999999999999999999999999999985 69998 7766
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCcc----cchHHH----HHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MRQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~----~d~~~y----~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|+|.+|+.|++|||.++.. .+++.+ .+.++.+++.+.+ .+.......+
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~ 163 (276)
T PRK14271 91 FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFR 163 (276)
T ss_pred cccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCccc
Confidence 3799999999999999999987632 122222 3344445443322 2345667889
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+.+.+.++ +.++.+.+++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE-EFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999987764 56766656789999999999875 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++.+
T Consensus 243 ~g~~~~~~~ 251 (276)
T PRK14271 243 EGPTEQLFS 251 (276)
T ss_pred eCCHHHHHh
Confidence 999999976
No 190
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.2e-36 Score=321.93 Aligned_cols=186 Identities=26% Similarity=0.434 Sum_probs=157.1
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|+.+ .++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPGG-------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV-RIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCCC-------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcccCCHHH
Confidence 6889999999532 468999 99999999999999999999999999999999999998 7766
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCcc---c----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|+|.++. .|++||+.++.. . .+++.++.++..++.+.+...| .+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~ 142 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGE 142 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHH
Confidence 3799999999985 799999987532 1 2345566777777765444333 5899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCE
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~ 796 (1065)
|||++||||++++|+++||||||++||+.+...+. +.++.+. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 143 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 143 QQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL-DLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999987664 5666554 47999999999999875 99999999985
No 191
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9e-36 Score=322.56 Aligned_cols=194 Identities=26% Similarity=0.367 Sum_probs=162.6
Q ss_pred ccEEEeeeEEEecccccccCCC-cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKP-TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~-~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------- 659 (1065)
..++++|++++|++. .. .++++| |+++++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 5 ~~l~~~~l~~~~~~~-----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQG-----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV-SLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCC-----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE-EECCEEcccCC
Confidence 358999999999753 11 358999 99999999999999999999999999999999999998 7765
Q ss_pred ----------eEEEEecCCCCCC-CcHHHHHhcCcc---c----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ----------KKAYVPQSSWIQT-GTIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ----------~iayv~Q~pwif~-gTIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|+|.++. .|++|||.++.. . ++++.+++++.+++.+.++.. ..+|
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~L 147 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQL 147 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhC
Confidence 3899999998887 599999986421 1 234556677777776554433 3489
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEeCCEEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e 799 (1065)
|||||||++||||+.++|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI-ADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999997766 456666532 789999999999998899999999999986
Q ss_pred e
Q 001505 800 S 800 (1065)
Q Consensus 800 ~ 800 (1065)
.
T Consensus 227 ~ 227 (228)
T PRK10584 227 E 227 (228)
T ss_pred c
Confidence 4
No 192
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-36 Score=335.80 Aligned_cols=203 Identities=25% Similarity=0.398 Sum_probs=171.3
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g--- 659 (1065)
..|+++|+++.|++ .++|++ |++|++||+++|+|++|||||||+++|.|.++ |.+|+| .++|
T Consensus 44 ~~l~i~nl~~~~~~--------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I-~i~g~~i 114 (305)
T PRK14264 44 AKLSVEDLDVYYGD--------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV-ELDGQDI 114 (305)
T ss_pred ceEEEEEEEEEeCC--------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECCEEc
Confidence 45899999999964 358999 99999999999999999999999999999986 689998 7765
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCccc--------------------chHHHHHHHHHhcchHHHHhhc
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM--------------------RQSFYEEVLEGCALNQDIEMWA 707 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~--------------------d~~~y~~vl~ac~L~~di~~Lp 707 (1065)
.++|++|++.++++|++|||.++... .+++..++++.+++.+++
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 190 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV---- 190 (305)
T ss_pred ccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh----
Confidence 38999999999999999999986321 123345555655554433
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-C
Q 001505 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-A 786 (1065)
Q Consensus 708 ~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-a 786 (1065)
++....+..+||||||||++||||++++|+|+||||||++||+.+.+.+ .+.|+.+.+++|+|+|||+++.+.. |
T Consensus 191 ---~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~~~tiiivtH~~~~i~~~~ 266 (305)
T PRK14264 191 ---NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI-EDLIEELAEEYTVVVVTHNMQQAARIS 266 (305)
T ss_pred ---hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhc
Confidence 3455777889999999999999999999999999999999999997766 5677777667899999999999765 9
Q ss_pred CEE-EEEeCCEEEEecCHHHHHh
Q 001505 787 DLV-LVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 787 D~I-lvl~~G~I~e~Gt~~eL~~ 808 (1065)
|+| ++|++|++++.|+++++.+
T Consensus 267 d~i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 267 DQTAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred CEEEEEecCCEEEEeCCHHHHHh
Confidence 997 5779999999999999875
No 193
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-36 Score=331.43 Aligned_cols=199 Identities=27% Similarity=0.416 Sum_probs=169.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|+.. .++++| ||++++||.++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 3 ~l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYSGS-------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV-LIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeCCC-------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHH
Confidence 37899999999643 358999 99999999999999999999999999999999999999 8877
Q ss_pred ----eEEEEecCC--CCCCCcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 ----KKAYVPQSS--WIQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 ----~iayv~Q~p--wif~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++||+|+| .+++.|++|||.++.. .++ ++.++.++.++|.+.+... ...||||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~ 143 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEK 143 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHH
Confidence 389999998 4778999999987542 232 2456667777776544333 458999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||++||||++.+|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|++||+++.+ ..||+|++|++|++++.|++
T Consensus 144 qrl~laraL~~~p~llilDEPt~gLD~~~~~~l-~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~ 222 (277)
T PRK13652 144 KRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL-IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCH
Confidence 999999999999999999999999999997765 456666543 78999999999998 56999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+|+.+
T Consensus 223 ~~~~~ 227 (277)
T PRK13652 223 EEIFL 227 (277)
T ss_pred HHHhc
Confidence 99986
No 194
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-36 Score=324.04 Aligned_cols=197 Identities=29% Similarity=0.384 Sum_probs=168.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++ .++++| |+++++|++++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i-~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG--------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI-LLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC--------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCChhh
Confidence 468999999964 368999 99999999999999999999999999999999999998 8876
Q ss_pred -eEEEEecCCCCCCC-cHHHHHhcCcc---c----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -KKAYVPQSSWIQTG-TIRENILFGKD---M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -~iayv~Q~pwif~g-TIreNIlfG~~---~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++||+|++-++.+ |++||+.++.. . .+++++++++..++.+.+...| .+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~ 140 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVA 140 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHH
Confidence 38999999999864 99999987532 1 1335566666666665544333 699999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHH
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
||||++++|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|++||+++.++. ||+|++|++|++++.|+++++.
T Consensus 141 laral~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 141 IARALVNEPKVLLLDEPLGALDLKLRKDM-QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999999998765 556766543 7999999999999754 9999999999999999999887
Q ss_pred h
Q 001505 808 A 808 (1065)
Q Consensus 808 ~ 808 (1065)
+
T Consensus 220 ~ 220 (232)
T cd03300 220 E 220 (232)
T ss_pred h
Confidence 6
No 195
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9e-36 Score=335.74 Aligned_cols=199 Identities=28% Similarity=0.426 Sum_probs=167.3
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..|+++|++++|++ ..+++| ||+|++||+++++||+|||||||+++|+|+++|++|+| .++|
T Consensus 6 ~~i~i~~l~k~~~~--------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v-~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRYGD--------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEECC--------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEecccchH
Confidence 46999999999963 358999 99999999999999999999999999999999999999 8877
Q ss_pred ----eEEEEecCCCCCC-CcHHHHHhcCcc-c--ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHH
Q 001505 660 ----KKAYVPQSSWIQT-GTIRENILFGKD-M--RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1065)
Q Consensus 660 ----~iayv~Q~pwif~-gTIreNIlfG~~-~--d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQ 727 (1065)
++|||||+|.++. .|++||+.|... + +. ++.+++++.++|.+ ..++.+ .+|||||||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~q 145 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKV----GELSGGMKR 145 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCch----hhCCHHHHH
Confidence 4899999998875 799999985322 1 21 23344555555432 233333 479999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHH
Q 001505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 728 RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
|++||||+.++|++++|||||++||+++.+.+. +.++.+. +++|+|++||+++.++. ||+|++|++|++++.|+.++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999987764 5676654 47999999999999865 99999999999999999999
Q ss_pred HHh
Q 001505 806 LIA 808 (1065)
Q Consensus 806 L~~ 808 (1065)
+.+
T Consensus 225 l~~ 227 (306)
T PRK13537 225 LIE 227 (306)
T ss_pred HHh
Confidence 976
No 196
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.2e-35 Score=334.81 Aligned_cols=199 Identities=32% Similarity=0.474 Sum_probs=165.2
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..|+++|++++|++ .++++| ||+|++|++++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 3 ~~i~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSYGD--------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI-TVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEeCC--------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECcccHH
Confidence 35899999999964 358999 99999999999999999999999999999999999999 8876
Q ss_pred ----eEEEEecCCCCC-CCcHHHHHhc-Ccc--cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHH
Q 001505 660 ----KKAYVPQSSWIQ-TGTIRENILF-GKD--MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1065)
Q Consensus 660 ----~iayv~Q~pwif-~gTIreNIlf-G~~--~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQ 727 (1065)
.++|++|++.++ +.|++||+.+ +.. .++ ++.+++++.++|.+. . ..+..+|||||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~----~~~~~~LSgG~~q 142 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------A----DVRVALLSGGMKR 142 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------h----cCchhhCCHHHHH
Confidence 389999999888 4799999975 221 222 223344444444322 2 2334579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHH
Q 001505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 728 RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
|++||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 143 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 143 RLTLARALINDPQLLILDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999987764 5566553 4789999999999985 599999999999999999999
Q ss_pred HHh
Q 001505 806 LIA 808 (1065)
Q Consensus 806 L~~ 808 (1065)
+.+
T Consensus 222 ~~~ 224 (303)
T TIGR01288 222 LID 224 (303)
T ss_pred HHh
Confidence 875
No 197
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.4e-35 Score=336.84 Aligned_cols=216 Identities=22% Similarity=0.357 Sum_probs=172.1
Q ss_pred ccEEEeeeEEEecccccc-----cCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~-----~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--- 659 (1065)
..++++|++.+|+..... .+....+++| ||+|++||.++|+|++|||||||+++|+|+++|.+|+| .++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I-~~~G~~i 85 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV-AWLGKDL 85 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE-EECCEEC
Confidence 468999999999742000 0012457888 99999999999999999999999999999999999999 7766
Q ss_pred -------------eEEEEecCCC--CC-CCcHHHHHhcCc-----ccch----HHHHHHHHHhcchHHHHhhcCCCCccc
Q 001505 660 -------------KKAYVPQSSW--IQ-TGTIRENILFGK-----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVV 714 (1065)
Q Consensus 660 -------------~iayv~Q~pw--if-~gTIreNIlfG~-----~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~I 714 (1065)
+++||+|+|. ++ ..||.|||.++. ..++ ++.+++++..+|.++. .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~ 155 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------I 155 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------h
Confidence 4899999983 55 689999997532 1222 2334556666663321 2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEE
Q 001505 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLV 791 (1065)
Q Consensus 715 Ge~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilv 791 (1065)
.....+|||||||||+||||++.+|+++|+||||||||+.+...+.+ .++.+.+ +.|+|+|||+++.+.. ||+|++
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 34456899999999999999999999999999999999999888754 5666543 7899999999999875 999999
Q ss_pred EeCCEEEEecCHHHHHhhcchHHHH
Q 001505 792 MKDGKIEQSGKYEDLIADQNSELVR 816 (1065)
Q Consensus 792 l~~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1065)
|++|+|++.|+.+++.++....|.+
T Consensus 235 l~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 235 MYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EECCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999998633344544
No 198
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=326.75 Aligned_cols=197 Identities=25% Similarity=0.390 Sum_probs=166.5
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .++++| |+++++|++++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~ 73 (255)
T PRK11231 3 LRTENLTVGYGT--------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV-FLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEeEEEEECC--------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE-EECCEEhHHCCHHH
Confidence 789999999963 368999 99999999999999999999999999999999999998 8877
Q ss_pred ---eEEEEecCCCCCCC-cHHHHHhcCcc-----c------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 ---KKAYVPQSSWIQTG-TIRENILFGKD-----M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 ---~iayv~Q~pwif~g-TIreNIlfG~~-----~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
.++|++|++.++.+ |++||+.++.. + ++++.+++++.+++.+.. ......||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 142 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGG 142 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHH
Confidence 28999999988866 99999998631 1 123445555555554332 3346789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecC
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt 802 (1065)
||||++||||+.++|+++||||||++||+++.+.+ .+.++.+. +++|+|++||+++.++ .||+|++|++|++++.|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL-MRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcC
Confidence 99999999999999999999999999999997766 45666554 4799999999999875 599999999999999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
++++..
T Consensus 222 ~~~~~~ 227 (255)
T PRK11231 222 PEEVMT 227 (255)
T ss_pred HHHhcC
Confidence 999865
No 199
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=331.11 Aligned_cols=204 Identities=22% Similarity=0.332 Sum_probs=168.4
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-----CCCCcEEEECC--
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-----RISGAAIKVHG-- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-----~~~G~i~~v~g-- 659 (1065)
+..++++|++++|+. .++++| |++|++||+++|+|++|||||||+++|.|..+ |.+|+| .++|
T Consensus 37 ~~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I-~~~g~~ 107 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL-MFDGED 107 (286)
T ss_pred ceEEEEeeeEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE-EECCEE
Confidence 346899999999964 358999 99999999999999999999999999999754 489998 7765
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCccc----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
.++|++|+|.+++.|++|||.++... ++ ++..++++..++.+.+. .....+.
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~ 180 (286)
T PRK14275 108 IYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNA 180 (286)
T ss_pred hhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCCh
Confidence 38999999999999999999986431 11 22334444444432221 1235567
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
..||||||||++||||++++|+++||||||++||+++.+.+. +.++.+.+++|+|++||+++.+. .||+|++|++|++
T Consensus 181 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE-DLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVL 259 (286)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999987664 56777666789999999999975 5999999999999
Q ss_pred EEecCHHHHHh
Q 001505 798 EQSGKYEDLIA 808 (1065)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1065)
++.|+++++.+
T Consensus 260 ~~~g~~~~~~~ 270 (286)
T PRK14275 260 VEHAPTAQLFT 270 (286)
T ss_pred EEeCCHHHHHh
Confidence 99999999876
No 200
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=327.54 Aligned_cols=200 Identities=20% Similarity=0.284 Sum_probs=168.4
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------- 659 (1065)
...|+++|++++|++ ..+++| ||++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 5 ~~~l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~ 75 (265)
T PRK10253 5 VARLRGEQLTLGYGK--------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WLDGEHIQHYA 75 (265)
T ss_pred ccEEEEEEEEEEECC--------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEEhhhCC
Confidence 356999999999974 358999 99999999999999999999999999999999999999 8877
Q ss_pred ------eEEEEecCCCCC-CCcHHHHHhcCc-cc----------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ------KKAYVPQSSWIQ-TGTIRENILFGK-DM----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ------~iayv~Q~pwif-~gTIreNIlfG~-~~----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|++-++ +.|++||+.++. +. ++++.+++++..+|.+. ......+|
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~L 144 (265)
T PRK10253 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTL 144 (265)
T ss_pred HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccC
Confidence 389999999876 579999998752 11 12344555665555433 23456799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIE 798 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~ 798 (1065)
|||||||++||||++++|+++||||||++||+.+.+++. +.++.+.+ ++|+|++||+++.+ ..||+|++|++|+++
T Consensus 145 S~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL-ELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999988764 55666543 78999999999977 459999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+.+++..
T Consensus 224 ~~g~~~~~~~ 233 (265)
T PRK10253 224 AQGAPKEIVT 233 (265)
T ss_pred EeCCHHHHhh
Confidence 9999999875
No 201
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-35 Score=328.39 Aligned_cols=197 Identities=21% Similarity=0.301 Sum_probs=164.9
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .++++| |+++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRYQD--------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV-LWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEcCC--------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEE-EECCEEcccccCCH
Confidence 678999999963 358999 99999999999999999999999999999999999998 7766
Q ss_pred -----eEEEEecCCC--CCCCcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -----KKAYVPQSSW--IQTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -----~iayv~Q~pw--if~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|+|. ++..|+.|||.++.. .++ ++.+++++..++.+.. .....+|||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~ 141 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQ 141 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHH
Confidence 3799999985 677899999987521 122 2334555555554322 23456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
|||++||||+..+|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.+. .||+|++|++|++++.|+.
T Consensus 142 ~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI-AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999987664 5666653 4789999999999985 5999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+++..
T Consensus 221 ~~~~~ 225 (271)
T PRK13638 221 GEVFA 225 (271)
T ss_pred HHHhc
Confidence 99875
No 202
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=325.42 Aligned_cols=203 Identities=24% Similarity=0.348 Sum_probs=173.7
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g--- 659 (1065)
..+.+++.++.|.+ .+.++| |+++++||+++|+|++|||||||+++|.|+++| .+|+| .++|
T Consensus 7 ~~~~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i 77 (261)
T PRK14263 7 IVMDCKLDKIFYGN--------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV-HFLGQDV 77 (261)
T ss_pred ceEEEEeEEEEeCC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE-EECCEec
Confidence 45788899998853 468999 999999999999999999999999999999986 79998 7776
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCccc------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKDM------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++|++|+|++++.|++|||.++... .+++.+++++..+|.+++.. ..+++..+|
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~L 150 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150 (261)
T ss_pred cccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccC
Confidence 27999999999999999999987431 23456777887777665543 235677899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEe-------
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK------- 793 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~------- 793 (1065)
|||||||++||||++++|+++||||||++||+.+...+. +.++.+.+++|+|++||+++.++ .||+|++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~-~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVE-ELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 999999999999999999999999999999999987764 56666656789999999999875 599999996
Q ss_pred -CCEEEEecCHHHHHh
Q 001505 794 -DGKIEQSGKYEDLIA 808 (1065)
Q Consensus 794 -~G~I~e~Gt~~eL~~ 808 (1065)
+|++++.|+++++.+
T Consensus 230 ~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 230 RTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CCceEEEeCCHHHHHh
Confidence 899999999999876
No 203
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.1e-35 Score=323.88 Aligned_cols=197 Identities=36% Similarity=0.470 Sum_probs=165.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ +++++| |+++.+||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~i~~l~~~~~~--------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS--------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI-RLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC--------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEcCcCChhh
Confidence 478999999974 358999 99999999999999999999999999999999999998 8875
Q ss_pred -eEEEEecCCCCCCC-cHHHHHhcCccc---c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -KKAYVPQSSWIQTG-TIRENILFGKDM---R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -~iayv~Q~pwif~g-TIreNIlfG~~~---d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++||||+|.+|.+ |++||+.++.+. + +++.+++++..++.+.. .....+||||||||++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~ 140 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVA 140 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHH
Confidence 38999999999975 999999886432 1 22334445555443332 2344689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHH
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
||||+.++|+++||||||++||+++.+.+. +.+....+ ++|+|++||+++.++. ||+|++|++|++++.|+.+++.
T Consensus 141 laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 141 LARALAVEPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999987664 56665543 7899999999998755 9999999999999999999987
Q ss_pred h
Q 001505 808 A 808 (1065)
Q Consensus 808 ~ 808 (1065)
+
T Consensus 220 ~ 220 (237)
T TIGR00968 220 D 220 (237)
T ss_pred c
Confidence 5
No 204
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8e-36 Score=319.05 Aligned_cols=186 Identities=32% Similarity=0.473 Sum_probs=154.1
Q ss_pred EEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-----------
Q 001505 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------- 659 (1065)
Q Consensus 592 ~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g----------- 659 (1065)
+++|++++|++. ..+++++ |+++++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 1 ~~~~l~~~~~~~------~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDG------ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV-LVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCC------CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEEcccCCHHHH
Confidence 367899999652 2468999 99999999999999999999999999999999999999 8876
Q ss_pred --eEEEEecCC--CCCCCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH
Q 001505 660 --KKAYVPQSS--WIQTGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1065)
Q Consensus 660 --~iayv~Q~p--wif~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR 728 (1065)
.++|++|+| .+++.|++||+.++.. .+ +++.++.++..+|.+.+ ..+..+||||||||
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 142 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQR 142 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHH
Confidence 379999998 3678999999987532 12 22344455555554333 34457899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCE
Q 001505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1065)
Q Consensus 729 IaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~ 796 (1065)
++||||++++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELL-ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999988775 4566554 37899999999999877 99999999985
No 205
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=343.51 Aligned_cols=198 Identities=26% Similarity=0.445 Sum_probs=170.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 ~L~~~nls~~y~~--------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I-~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFGD--------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV-LVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEECC--------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEEcCcCCHH
Confidence 4889999999964 468999 99999999999999999999999999999999999999 8887
Q ss_pred ----eEEEEecCCCC-CCCcHHHHHhcCcc-----------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 ----KKAYVPQSSWI-QTGTIRENILFGKD-----------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 ----~iayv~Q~pwi-f~gTIreNIlfG~~-----------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
+++||+|++-+ ++.|++||+.+|.. .++++.+++++..++.+..+ ....+|||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSg 142 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSG 142 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCH
Confidence 38999999987 78999999988741 12345666777777654332 23568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEec
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~G 801 (1065)
|||||++||||++++|+++||||||++||+.+...+. +.++.+. +++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~-~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999999999999999999999977664 5666654 478999999999998 569999999999999999
Q ss_pred CHHHHHh
Q 001505 802 KYEDLIA 808 (1065)
Q Consensus 802 t~~eL~~ 808 (1065)
+++|++.
T Consensus 222 ~~~ev~~ 228 (402)
T PRK09536 222 PPADVLT 228 (402)
T ss_pred CHHHHhC
Confidence 9999986
No 206
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=323.85 Aligned_cols=202 Identities=21% Similarity=0.359 Sum_probs=164.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC-----CCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~-----~G~i~~v~g---- 659 (1065)
.++++|++++|++ .++++| |++|++||.++|+|++|||||||+++|.|+++|. +|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYYGD--------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI-LLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEECC--------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE-EECCEEcc
Confidence 4789999999963 368999 9999999999999999999999999999999864 7998 7765
Q ss_pred -----------eEEEEecCCCCCC-CcHHHHHhcCccc----chHH----HHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM----RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~-gTIreNIlfG~~~----d~~~----y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++|++|+|.++. .|++||+.++... ++++ .++.++..++.+.+ ++. ......
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~----~~~~~~ 147 (252)
T PRK14272 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDR----LKTPAT 147 (252)
T ss_pred cCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhh----hcCCcc
Confidence 3899999999887 5999999865321 1222 22233333333222 111 234467
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~ 798 (1065)
+||||||||++||||+.++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI-EDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999997766 4567766567999999999999875 9999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
+.|+++++.+
T Consensus 227 ~~~~~~~~~~ 236 (252)
T PRK14272 227 EHGPTDQLFT 236 (252)
T ss_pred EeCCHHHHHh
Confidence 9999999876
No 207
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=325.24 Aligned_cols=197 Identities=26% Similarity=0.417 Sum_probs=167.0
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe---------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------- 660 (1065)
++++|++++|++ .++++| |+++++|++++|+|++|||||||+++|.|+.+|.+|+| .++|.
T Consensus 3 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i-~~~g~~~~~~~~~~ 73 (258)
T PRK13548 3 LEARNLSVRLGG--------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV-RLNGRPLADWSPAE 73 (258)
T ss_pred EEEEeEEEEeCC--------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEEcccCCHHH
Confidence 789999999964 358999 99999999999999999999999999999999999999 88772
Q ss_pred ----EEEEecCCCC-CCCcHHHHHhcCcc-c------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH
Q 001505 661 ----KAYVPQSSWI-QTGTIRENILFGKD-M------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1065)
Q Consensus 661 ----iayv~Q~pwi-f~gTIreNIlfG~~-~------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR 728 (1065)
++|++|++.+ ++.|++||+.++.. . ++++.+++++..++.+.. ......||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qr 142 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQR 142 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHH
Confidence 7999999987 67899999988642 1 123345556665554332 33457999999999
Q ss_pred HHHHHHHc------cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 729 IQLARAVY------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 729 IaLARAly------~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
++||||++ .+|+++||||||++||+.+.+++ .+.++.+. +++|+|++||+++.+. .||+|++|++|++++
T Consensus 143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV-LRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999 59999999999999999998766 45676654 4789999999999886 699999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+++++.+
T Consensus 222 ~~~~~~~~~ 230 (258)
T PRK13548 222 DGTPAEVLT 230 (258)
T ss_pred eCCHHHHhC
Confidence 999998875
No 208
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=325.83 Aligned_cols=204 Identities=19% Similarity=0.352 Sum_probs=165.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~-------- 660 (1065)
.++++|+++.|++ .+++++ |+++++|++++|+|++|||||||+++|.|+++|++|+| .++|.
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFGG--------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEECC--------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE-EECCEECCCCCHH
Confidence 5899999999963 468999 99999999999999999999999999999999999998 88772
Q ss_pred ------EEEEecCCCCCCC-cHHHHHhcCcc-----------c-----chHHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 661 ------KAYVPQSSWIQTG-TIRENILFGKD-----------M-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 661 ------iayv~Q~pwif~g-TIreNIlfG~~-----------~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
++|++|+|.++.+ |++|||.++.. + +++. .+..+ ...+.++.+ |.+.....+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~l~~~--gl~~~~~~~ 150 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEALD--RAATWLERV--GLLEHANRQ 150 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHHH--HHHHHHHhC--ChhhhhhCC
Confidence 7899999999875 99999998631 0 0000 00000 011122222 344445677
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~ 794 (1065)
..+||||||||++||||++++|+++||||||++||+.+.+.+ .+.+..+.+ ++|+|++||+++.+.. ||+|++|++
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 789999999999999999999999999999999999998766 456666543 7899999999999855 999999999
Q ss_pred CEEEEecCHHHHHh
Q 001505 795 GKIEQSGKYEDLIA 808 (1065)
Q Consensus 795 G~I~e~Gt~~eL~~ 808 (1065)
|++++.|+.+++.+
T Consensus 230 g~i~~~~~~~~~~~ 243 (255)
T PRK11300 230 GTPLANGTPEEIRN 243 (255)
T ss_pred CeEEecCCHHHHhh
Confidence 99999999988865
No 209
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=325.48 Aligned_cols=202 Identities=24% Similarity=0.390 Sum_probs=170.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g---- 659 (1065)
.++++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|+++| ++|+| .++|
T Consensus 7 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i-~~~g~~i~ 77 (259)
T PRK14260 7 AIKVKDLSFYYNT--------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV-DFFGQNIY 77 (259)
T ss_pred eEEEEEEEEEECC--------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE-EECCEecc
Confidence 5899999999963 358999 999999999999999999999999999999885 48998 7765
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCcc----cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|++.+|+.|++|||.++.. ++ +++.+++++.+++.++++.. ....+..
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~ 150 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALG 150 (259)
T ss_pred ccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCccc
Confidence 3899999999999999999987532 12 23445667777776554322 3456789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEe-----C
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMK-----D 794 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~-----~ 794 (1065)
||||||||++||||+.++|+++||||||++||+.+.+.+ .+.++.+.+++|+|++||+++.+.. ||++++|+ +
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~ 229 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV-EELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRI 229 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCC
Confidence 999999999999999999999999999999999998766 4567666667999999999999764 99999997 5
Q ss_pred CEEEEecCHHHHHh
Q 001505 795 GKIEQSGKYEDLIA 808 (1065)
Q Consensus 795 G~I~e~Gt~~eL~~ 808 (1065)
|++++.|+.+|+.+
T Consensus 230 G~i~~~~~~~~~~~ 243 (259)
T PRK14260 230 GQMVEFGVTTQIFS 243 (259)
T ss_pred ceEEEeCCHHHHhc
Confidence 99999999999875
No 210
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=322.69 Aligned_cols=203 Identities=21% Similarity=0.338 Sum_probs=163.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|+++.|++ .+++++ |++|++||+++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYGK--------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI-VFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeCC--------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE-EECCEecCCCCHH
Confidence 4889999999963 368999 99999999999999999999999999999999999998 8876
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
.++|++|++-+|. .|++|||.++... +.++.++.++ +-++.++..+++ .......||||||||++||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHER-RIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHHHHHH-HhCchhhCCHHHHHHHHHH
Confidence 2899999999887 5999999886432 2222222111 111222111111 2345678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
||++++|+|+||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999987664 5666554 489999999999875 5699999999999999999999875
No 211
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.1e-35 Score=316.40 Aligned_cols=188 Identities=29% Similarity=0.441 Sum_probs=158.7
Q ss_pred EEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe----------
Q 001505 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK---------- 660 (1065)
Q Consensus 592 ~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~---------- 660 (1065)
+++|+++.|+. .++| |+++++||.++|+||+|||||||+++|.|+++|.+|+| .++|.
T Consensus 2 ~~~~l~~~~~~----------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 2 ALDKVRYEYEH----------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI-KVNDQSHTGLAPYQR 70 (213)
T ss_pred eEEeeeEEeCC----------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEcccCChhcc
Confidence 67899999852 2357 99999999999999999999999999999999999999 88773
Q ss_pred -EEEEecCCCCCC-CcHHHHHhcCc-c-c-----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHH
Q 001505 661 -KAYVPQSSWIQT-GTIRENILFGK-D-M-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQL 731 (1065)
Q Consensus 661 -iayv~Q~pwif~-gTIreNIlfG~-~-~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaL 731 (1065)
++|++|+|.+|. .|++||+.++. + . ++++.+++++..++.+.....| .+||||||||++|
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 139 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVAL 139 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHH
Confidence 899999999987 59999998642 1 1 2345666777777765544444 3899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecC
Q 001505 732 ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 732 ARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt 802 (1065)
|||++++|+++||||||++||+++.+.+. +.++.+.+ ++|+|+|||+.+.+. .||+|++|++|++++.|.
T Consensus 140 aral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALDPLLREEML-ALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999987664 55666542 789999999999976 599999999999999874
No 212
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.8e-35 Score=326.93 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=163.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC---CCcEEEECC------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG------ 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~---~G~i~~v~g------ 659 (1065)
.++++|++++|++ .++++| ||++++||+++|+|++|||||||+++|.|+++|+ +|+| .++|
T Consensus 4 ~l~~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i-~~~g~~~~~~ 74 (262)
T PRK09984 4 IIRVEKLAKTFNQ--------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI-ELLGRTVQRE 74 (262)
T ss_pred EEEEeeEEEEeCC--------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE-EECCEecccc
Confidence 5899999999963 368999 9999999999999999999999999999999876 4888 7776
Q ss_pred ------------eEEEEecCCCCCC-CcHHHHHhcCcc---------------cchHHHHHHHHHhcchHHHHhhcCCCC
Q 001505 660 ------------KKAYVPQSSWIQT-GTIRENILFGKD---------------MRQSFYEEVLEGCALNQDIEMWADGDL 711 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~-gTIreNIlfG~~---------------~d~~~y~~vl~ac~L~~di~~Lp~Gd~ 711 (1065)
.++|++|++.++. .|++||+.++.. ..+++.+++++..++.+.
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------- 145 (262)
T PRK09984 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF--------- 145 (262)
T ss_pred cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH---------
Confidence 2799999998887 599999987631 012234455555555432
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchh-hcCCE
Q 001505 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADL 788 (1065)
Q Consensus 712 T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l-~~aD~ 788 (1065)
+.....+||||||||++||||++.+|+++||||||++||+++.+.+ .+.|+.+. +++|+|++||+++.+ ..||+
T Consensus 146 --~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 146 --AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV-MDTLRDINQNDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred --HhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 2345568999999999999999999999999999999999998766 55676664 379999999999985 56999
Q ss_pred EEEEeCCEEEEecCHHHH
Q 001505 789 VLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 789 Ilvl~~G~I~e~Gt~~eL 806 (1065)
|++|++|++++.|+++++
T Consensus 223 i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 223 IVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999999986
No 213
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.2e-35 Score=325.09 Aligned_cols=197 Identities=22% Similarity=0.359 Sum_probs=165.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|+++.|++ .++++| |+++++||+++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG--------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV-DLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEEcccCCHHH
Confidence 678999999964 368999 99999999999999999999999999999999999999 8877
Q ss_pred ---eEEEEecCCC-CCCCcHHHHHhcCcc-c----------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 ---KKAYVPQSSW-IQTGTIRENILFGKD-M----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 ---~iayv~Q~pw-if~gTIreNIlfG~~-~----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
.++|++|++. .+..|++|||.++.. . +.++.+++++.+++.+. .......||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 141 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGG 141 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHH
Confidence 3899999985 567899999988631 1 11234445555555322 23456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecC
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt 802 (1065)
||||++||||++.+|+++||||||++||+++...+ .+.++.+. +++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLET-LALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence 99999999999999999999999999999997766 45676654 3789999999999984 699999999999999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
.+++..
T Consensus 221 ~~~~~~ 226 (256)
T TIGR03873 221 PREVLT 226 (256)
T ss_pred HHHhhC
Confidence 998865
No 214
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=339.17 Aligned_cols=195 Identities=24% Similarity=0.419 Sum_probs=165.4
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
+++ |++++|++. .+ | |+++++||+++|+||+|||||||+++|.|+.+|++|+| .++|
T Consensus 2 l~~-~l~k~~~~~---------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQLGDL---------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEeCCE---------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccccccc
Confidence 455 888888532 22 6 99999999999999999999999999999999999998 7765
Q ss_pred -------eEEEEecCCCCCC-CcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -------KKAYVPQSSWIQT-GTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -------~iayv~Q~pwif~-gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++||+|++.+|. .|++|||.|+.. .++++.+++++..+|.+.++.. ..+||||||||++
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRva 138 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVA 138 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHH
Confidence 3799999999985 699999999743 3345677778877776554433 4689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHH
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
||||++++|+++|||||||+||+++.+.+. +.++.+.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 139 laraL~~~p~llLLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 139 IGRALLTAPELLLMDEPLASLDLPRKRELL-PYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999999999999987764 45666543 689999999998764 59999999999999999999998
Q ss_pred hh
Q 001505 808 AD 809 (1065)
Q Consensus 808 ~~ 809 (1065)
.+
T Consensus 218 ~~ 219 (352)
T PRK11144 218 AS 219 (352)
T ss_pred hC
Confidence 73
No 215
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.5e-35 Score=322.14 Aligned_cols=197 Identities=22% Similarity=0.265 Sum_probs=159.4
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc--cCCCCcEEEECCe-------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHGK------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~--~~~~G~i~~v~g~------- 660 (1065)
++++|++++|++ .++++| |++|++||+++|+||+|||||||+++|.|.. +|++|+| .++|.
T Consensus 1 l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVED--------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI-LFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEECC--------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE-EECCEecCCCCH
Confidence 468999999963 358999 9999999999999999999999999999994 7999999 88762
Q ss_pred -------EEEEecCCCCCCC-cHHHHHhcCcc----------cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 661 -------KAYVPQSSWIQTG-TIRENILFGKD----------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 661 -------iayv~Q~pwif~g-TIreNIlfG~~----------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
++|++|+|.++.+ |++||+.+... .+ +++..++++..+|.+++ .....
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~ 141 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSV 141 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------ccccc
Confidence 7899999998865 89999976421 11 12233444444443221 11122
Q ss_pred C-CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc--CCEEEEEeC
Q 001505 719 I-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA--ADLVLVMKD 794 (1065)
Q Consensus 719 ~-nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~--aD~Ilvl~~ 794 (1065)
. +||||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.+.. ||+|++|++
T Consensus 142 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 142 NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA-EGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLD 220 (243)
T ss_pred ccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeC
Confidence 2 49999999999999999999999999999999999987764 5666654 47899999999999876 799999999
Q ss_pred CEEEEecCHHHHH
Q 001505 795 GKIEQSGKYEDLI 807 (1065)
Q Consensus 795 G~I~e~Gt~~eL~ 807 (1065)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (243)
T TIGR01978 221 GRIVKSGDVELAK 233 (243)
T ss_pred CEEEEecCHHHhc
Confidence 9999999987654
No 216
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.1e-35 Score=318.37 Aligned_cols=189 Identities=23% Similarity=0.313 Sum_probs=156.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|+++.|+.+ .++++| |+++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 2 l~~~~l~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLGG-------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI-WFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecCC-------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCChhH
Confidence 6889999999532 468999 99999999999999999999999999999999999998 7776
Q ss_pred ------eEEEEecCCCC-CCCcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWI-QTGTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwi-f~gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|+|.+ ++.|++|||.++.. .++ ++.++.++..++.+++ .....+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~ 142 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGE 142 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHH
Confidence 37999999986 57899999987632 221 1233445555554433 23456899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
|||++||||++++|+++||||||++||+.+.+.+. ++++.+. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 143 QQRVGIARAVVNKPAVLLADEPTGNLDDALSEGIL-RLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999977664 5666653 47899999999999875 89999999999863
No 217
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.6e-35 Score=317.07 Aligned_cols=186 Identities=32% Similarity=0.402 Sum_probs=154.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .+++++ |+++++|++++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD--------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI-IIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC--------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCccchhH
Confidence 468999999964 358899 99999999999999999999999999999999999998 8776
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCcc----cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|+|.++. .|++||+.++.. .+. ++.+++++.+++.+. ......+|||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~ 140 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK-----------ADAYPAQLSGGQ 140 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhhCccccCHHH
Confidence 2799999999886 699999987631 221 233444555554433 334457899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
|||++||||+.++|+++||||||++||+++.+.+ .+.++.+. .++|+|++||+++.++ .||+|++|++|+|
T Consensus 141 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 141 QQRVAIARALAMNPKVMLFDEPTSALDPELVGEV-LDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999997766 45676654 4789999999999986 4999999999975
No 218
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=323.46 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=166.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc--C---CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--R---ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~--~---~~G~i~~v~g---- 659 (1065)
.|+++|+++.|+. .++++| |+++++||+++|+|++|||||||+++|.|..+ | ++|+| .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~~~ 75 (252)
T PRK14255 5 IITSSDVHLFYGK--------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV-SLRGQNIY 75 (252)
T ss_pred eEEEEeEEEEECC--------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE-EEcCEEcc
Confidence 4899999999963 358999 99999999999999999999999999999865 4 58998 7766
Q ss_pred -----------eEEEEecCCCCCCCcHHHHHhcCccc----ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQTGTIRENILFGKDM----RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~gTIreNIlfG~~~----d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|++.+++.|++|||.++... .+ ++..+.++.+++.+.+ .........+
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~ 148 (252)
T PRK14255 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALS 148 (252)
T ss_pred cccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCccc
Confidence 38999999999999999999875321 11 2233344444443222 2234556789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+++|+|+|||+++.++ .||+|++|++|++++
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI-ENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998776 456766666789999999999986 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++..
T Consensus 228 ~~~~~~~~~ 236 (252)
T PRK14255 228 FADTKQMFL 236 (252)
T ss_pred eCCHHHHhc
Confidence 999888875
No 219
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.2e-35 Score=307.88 Aligned_cols=158 Identities=35% Similarity=0.593 Sum_probs=143.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|++. ..+.+++ |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~~~l~~~~~~~------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPGA------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV-RLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCCC------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE-EECCEEcccCCHHH
Confidence 4689999999753 2468889 99999999999999999999999999999999999999 8876
Q ss_pred ---eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001505 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1065)
Q Consensus 660 ---~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly 736 (1065)
.++|++|+|++++.|++||+ ||||||||++||||+.
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~ 112 (173)
T cd03246 74 LGDHVGYLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALY 112 (173)
T ss_pred HHhheEEECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHh
Confidence 38999999999999999998 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEEeCCEE
Q 001505 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1065)
Q Consensus 737 ~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I 797 (1065)
++|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++.+..||+|++|++|++
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999988765 4565553 47899999999999999999999999975
No 220
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=322.70 Aligned_cols=198 Identities=22% Similarity=0.376 Sum_probs=164.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYKG--------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI-IIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeCC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 3789999999963 368999 99999999999999999999999999999999999998 8876
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCccc----chH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~~----d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++|++|++.++. .|++||+.++... +++ +.++.++.. |.+.....+...|||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~ 142 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF-----------HIEHLRDSMGQSLSGGE 142 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHc-----------CCHHHhhcchhhCCHHH
Confidence 3899999998887 5999999875322 211 222333332 33334556678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
|||++||||++++|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++.+ ..||+|++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDI-KRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCH
Confidence 9999999999999999999999999999997766 45565554 479999999999776 55999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+++.+
T Consensus 222 ~~~~~ 226 (241)
T PRK10895 222 TEILQ 226 (241)
T ss_pred HHHhc
Confidence 99875
No 221
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-35 Score=320.31 Aligned_cols=196 Identities=33% Similarity=0.483 Sum_probs=166.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|+++.|+. . .++| |++|++||+++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v-~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE--------F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI-LLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC--------c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcCcCChhH
Confidence 468899999952 2 6889 99999999999999999999999999999999999999 8887
Q ss_pred -eEEEEecCCCCCC-CcHHHHHhcCccc-------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -~iayv~Q~pwif~-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|++.++. .|++||+.++... .+++..+.++.++|.+++.. +..+||||||||++
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 139 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-----------KPETLSGGEQQRVA 139 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-----------CcccCCHHHHHHHH
Confidence 4899999999884 7999999876421 12334566666777655443 34689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHH
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
||||++++|++++|||||++||+.+.+.+ .+.++.+.+ ++|+|++||+++.++. ||+|++|++|++++.|+++++.
T Consensus 140 laral~~~p~llllDEPt~gLD~~~~~~l-~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 140 IARALVVNPKILLLDEPFSALDVRTKEKL-REELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHcCCCEEEECCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999998766 456666543 7999999999999875 9999999999999999999887
Q ss_pred h
Q 001505 808 A 808 (1065)
Q Consensus 808 ~ 808 (1065)
+
T Consensus 219 ~ 219 (235)
T cd03299 219 K 219 (235)
T ss_pred h
Confidence 6
No 222
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.9e-35 Score=323.57 Aligned_cols=206 Identities=21% Similarity=0.323 Sum_probs=163.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 6 ~l~~~~l~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYGP--------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV-HYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcCC--------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCccccccccc
Confidence 4899999999964 358999 99999999999999999999999999999999999998 7765
Q ss_pred -------------eEEEEecCCC--C-CCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 660 -------------KKAYVPQSSW--I-QTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 660 -------------~iayv~Q~pw--i-f~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
.++|++|++. + .+.|++|||.+... .....+.+.-+. ..+.++.++-+ .+..+.++.+||
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~-~~~~~~~~~~LS 153 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT--AGDWLERVEID-AARIDDLPTTFS 153 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH--HHHHHHHcCCC-hhHHhCCCccCC
Confidence 2799999984 3 34689999864310 000001111111 12233444222 134567788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
||||||++||||+.++|+++||||||++||+.+.+.+ .++++.+.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL-LDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998766 456766543 789999999999997 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+++++..
T Consensus 233 ~~~~~~~~~ 241 (258)
T PRK11701 233 SGLTDQVLD 241 (258)
T ss_pred eCCHHHHhc
Confidence 999999875
No 223
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.3e-34 Score=353.55 Aligned_cols=194 Identities=24% Similarity=0.408 Sum_probs=161.6
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC---CCcEEEECCe----------EEEEecCCCCCC-Cc
Q 001505 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHGK----------KAYVPQSSWIQT-GT 674 (1065)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~---~G~i~~v~g~----------iayv~Q~pwif~-gT 674 (1065)
++++|+| |+++++||+++|+||+||||||||++|.|+.++. +|+| .++|. ++||+|++++++ .|
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i-~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV-LLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECCHHHHhhhceeeccccccCccCc
Confidence 4679999 9999999999999999999999999999999874 7999 99984 599999999985 69
Q ss_pred HHHHHhcCcccch----HHHHHHHHHhcchHHHHh--hcCCCCccccCC--CCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 001505 675 IRENILFGKDMRQ----SFYEEVLEGCALNQDIEM--WADGDLSVVGER--GINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1065)
Q Consensus 675 IreNIlfG~~~d~----~~y~~vl~ac~L~~di~~--Lp~Gd~T~IGe~--G~nLSGGQKQRIaLARAly~~adIlLLDD 746 (1065)
|||||.|+..... .+.++..+ .++.++. +++..+|.||+. +..||||||||++||||++++|++++|||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~---v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRER---VDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHH---HHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 9999998754321 11111112 2223333 345679999985 58999999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcc--hhhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 747 PFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLE--FLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 747 p~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~--~l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
|||+||++++.++++. ++.+ .+++|+|++|||++ ..+.+|+|++|++|++++.|+++|+.+
T Consensus 193 PtsgLD~~~~~~l~~~-L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQV-LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred CCcchhHHHHHHHHHH-HHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999999988764 5444 35899999999996 468899999999999999999999864
No 224
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-35 Score=324.25 Aligned_cols=204 Identities=26% Similarity=0.373 Sum_probs=170.6
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC--
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG-- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g-- 659 (1065)
...|+++|+++.|++ .++++| |+++++||+++|+|++|||||||+++|.|..++ .+|+| .++|
T Consensus 18 ~~~l~~~nl~~~~~~--------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g~~ 88 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL-LYRDRN 88 (274)
T ss_pred CceEEEeeEEEEeCC--------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE-EECCEe
Confidence 346999999999963 358999 999999999999999999999999999999863 58998 7765
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCcc---c---chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKD---M---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~---~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|++.+++.|++|||.++.. + .++..++.++.+++.+.+.. ........
T Consensus 89 l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~ 161 (274)
T PRK14265 89 IYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTA 161 (274)
T ss_pred cccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCccc
Confidence 4899999999999999999988642 1 12234455666666544431 24566789
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEe------
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK------ 793 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~------ 793 (1065)
||||||||++||||++++|+++||||||++||+++.+.+ .+.++.+.+++|+|++||+++.+. .||+|++|+
T Consensus 162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~ 240 (274)
T PRK14265 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQV-EELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEY 240 (274)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccc
Confidence 999999999999999999999999999999999998766 456776666789999999999885 599999997
Q ss_pred ---CCEEEEecCHHHHHh
Q 001505 794 ---DGKIEQSGKYEDLIA 808 (1065)
Q Consensus 794 ---~G~I~e~Gt~~eL~~ 808 (1065)
+|++++.|+.+|+.+
T Consensus 241 ~~~~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 241 GKRRGKLVEFSPTEQMFG 258 (274)
T ss_pred cccCceEEEeCCHHHHHh
Confidence 899999999999875
No 225
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=7.1e-35 Score=320.72 Aligned_cols=200 Identities=25% Similarity=0.344 Sum_probs=168.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC----CCCcEEEECC-----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG----- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~----~~G~i~~v~g----- 659 (1065)
.++++|++++| + .++++| |+++++||+++|+|++|||||||+++|.|+.+| ++|+| .++|
T Consensus 4 ~l~~~~l~~~~--~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i-~~~g~~i~~ 73 (254)
T PRK10418 4 QIELRNIALQA--A-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGKPVAP 73 (254)
T ss_pred EEEEeCeEEEe--c-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE-EECCeeccc
Confidence 58999999999 3 358999 999999999999999999999999999999999 99998 8876
Q ss_pred ------eEEEEecCCC-CCC--CcHHHHHhc-----CcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSW-IQT--GTIRENILF-----GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pw-if~--gTIreNIlf-----G~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.++||+|+|- .|+ .|+.+|+.+ |.+.++++.+++++.+++.+. ++.++.....|||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq 145 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGM 145 (254)
T ss_pred cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHH
Confidence 3899999984 343 688888754 333344566777777766431 234566778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecC
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt 802 (1065)
|||++||||++++|+++||||||++||+.+.+.+ .+.++.+.+ ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l-~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARI-LDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999997765 456766543 789999999999985 599999999999999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
.+++.+
T Consensus 225 ~~~~~~ 230 (254)
T PRK10418 225 VETLFN 230 (254)
T ss_pred HHHHhh
Confidence 999976
No 226
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.8e-35 Score=315.84 Aligned_cols=194 Identities=24% Similarity=0.328 Sum_probs=165.0
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------e
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------K 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------~ 660 (1065)
++++|++++|+. .++++| |+++++||.++|+|++|||||||+++|.|+++|.+|+| .++| .
T Consensus 1 l~l~~v~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK--------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEECC--------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecccccccc
Confidence 468999999963 368999 99999999999999999999999999999999999999 8877 4
Q ss_pred EEEEecCCCCCC-CcHHHHHhcCcc---cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001505 661 KAYVPQSSWIQT-GTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1065)
Q Consensus 661 iayv~Q~pwif~-gTIreNIlfG~~---~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly 736 (1065)
++|++|++-++. .|++||+.++.. .++++..++++..++.+... ....+||||||||++||||++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHh
Confidence 799999998775 699999986432 24556667777777764332 234689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHH
Q 001505 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 737 ~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
++|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++.++ .||+|++|++|++++.|+.++
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l-~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQEL-RELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHH-HHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999997765 56676654 4789999999999985 599999999999999998764
No 227
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.7e-35 Score=330.52 Aligned_cols=197 Identities=27% Similarity=0.420 Sum_probs=167.9
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ ..+++| ||++++||.++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 3 l~~~~l~~~~~~--------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i-~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 3 IRVSSLTKLYGT--------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV-QVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEECC--------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccChHHH
Confidence 789999999963 358999 99999999999999999999999999999999999999 8877
Q ss_pred --eEEEEecCCCCCCC-cHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWIQTG-TIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwif~g-TIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
.++|+||+|.++.+ |++||+.+... .+ +++.+++++..+|.+ ....+..+||||||||+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv 142 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-----------EQHKKIGQLSKGYRQRV 142 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCchhhCCHHHHHHH
Confidence 38999999999865 99999976432 11 223444555554443 33455679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHHh
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
+||||+.++|+++||||||++||+.+.+.+. +.++.+.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIR-NVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999987764 567776668999999999998765 99999999999999999999875
No 228
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.7e-35 Score=334.27 Aligned_cols=199 Identities=30% Similarity=0.448 Sum_probs=166.4
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..|+++|++++|++ ..+++| ||+|++|+.++++||+|||||||+++|+|+++|++|+| .++|
T Consensus 40 ~~i~i~nl~k~y~~--------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i-~i~G~~~~~~~~ 110 (340)
T PRK13536 40 VAIDLAGVSKSYGD--------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI-TVLGVPVPARAR 110 (340)
T ss_pred eeEEEEEEEEEECC--------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE-EECCEECCcchH
Confidence 46999999999964 358999 99999999999999999999999999999999999999 8887
Q ss_pred ----eEEEEecCCCCC-CCcHHHHHhc-Cccc--c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHH
Q 001505 660 ----KKAYVPQSSWIQ-TGTIRENILF-GKDM--R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1065)
Q Consensus 660 ----~iayv~Q~pwif-~gTIreNIlf-G~~~--d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQ 727 (1065)
.++||||++.++ +.|++||+.| +.-+ + +++.+++++.++|. +..++. ..+|||||||
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-------~~~~~~----~~~LS~G~kq 179 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-------SKADAR----VSDLSGGMKR 179 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hhhCCC----hhhCCHHHHH
Confidence 389999999886 6799999975 3211 2 12333444444443 223333 3589999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHH
Q 001505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 728 RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
|++||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+. .||+|++|++|+|+..|+.++
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999987764 5666553 4899999999999985 599999999999999999999
Q ss_pred HHh
Q 001505 806 LIA 808 (1065)
Q Consensus 806 L~~ 808 (1065)
+.+
T Consensus 259 l~~ 261 (340)
T PRK13536 259 LID 261 (340)
T ss_pred HHh
Confidence 875
No 229
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=322.69 Aligned_cols=204 Identities=24% Similarity=0.343 Sum_probs=168.5
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------- 659 (1065)
.+.++++|++++|++ .+.++| |+++++||+++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 8 ~~~i~~~~~~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v-~~~G~~~~~g~ 78 (257)
T PRK14246 8 EDVFNISRLYLYIND--------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI-KVDGKVLYFGK 78 (257)
T ss_pred hhheeeeeEEEecCC--------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCce-eEcCEEEECCc
Confidence 356999999999964 358999 99999999999999999999999999999999999876 5554
Q ss_pred ------------eEEEEecCCCCCCC-cHHHHHhcCcc---c-chHH----HHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 ------------KKAYVPQSSWIQTG-TIRENILFGKD---M-RQSF----YEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~g-TIreNIlfG~~---~-d~~~----y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
+++|++|+|-++.+ |++|||.++.. . +++. ..++++..++++.+ ....++.+
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~ 151 (257)
T PRK14246 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPA 151 (257)
T ss_pred ccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCc
Confidence 37999999999875 99999997632 1 2222 23334444443322 12245577
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchh-hcCCEEEEEeCCEE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKI 797 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I 797 (1065)
..||||||||++||||++++|+++||||||++||+.+.+.+ .+.+..+.+++|+|+|||+.+++ ..||++++|++|++
T Consensus 152 ~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI-EKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGEL 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 88999999999999999999999999999999999998765 56777665679999999999998 56999999999999
Q ss_pred EEecCHHHHHh
Q 001505 798 EQSGKYEDLIA 808 (1065)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1065)
++.|+.+|+.+
T Consensus 231 ~~~g~~~~~~~ 241 (257)
T PRK14246 231 VEWGSSNEIFT 241 (257)
T ss_pred EEECCHHHHHh
Confidence 99999999986
No 230
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-35 Score=323.45 Aligned_cols=202 Identities=24% Similarity=0.377 Sum_probs=167.3
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g---- 659 (1065)
.++++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|.++| ++|+| .++|
T Consensus 4 ~l~i~~v~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I-~~~g~~~~ 74 (258)
T PRK14241 4 RIDVKDLNIYYGS--------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV-LLDGEDLY 74 (258)
T ss_pred cEEEeeEEEEECC--------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE-EECCEecc
Confidence 4889999999964 358999 999999999999999999999999999999874 69998 7765
Q ss_pred -----------eEEEEecCCCCCC-CcHHHHHhcCccc----c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 -----------KKAYVPQSSWIQT-GTIRENILFGKDM----R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~-gTIreNIlfG~~~----d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++|++|++-++. .|++||+.++... + +++.+++++..++.+.++ ........
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 147 (258)
T PRK14241 75 GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGG 147 (258)
T ss_pred ccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcc
Confidence 3899999999886 6999999875321 1 123344555555543221 23355677
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEe-----
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK----- 793 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~----- 793 (1065)
+||||||||++||||+.++|+++||||||++||+.+.+.+ .+.++.+.+++|+|+|||+++.+. .||+|++|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~ 226 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAI-EDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATG 226 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCC
Confidence 8999999999999999999999999999999999998766 566776656789999999999875 699999996
Q ss_pred -CCEEEEecCHHHHHh
Q 001505 794 -DGKIEQSGKYEDLIA 808 (1065)
Q Consensus 794 -~G~I~e~Gt~~eL~~ 808 (1065)
+|+|++.|+++++..
T Consensus 227 ~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 227 KPGRLVEIDDTEKIFS 242 (258)
T ss_pred CCceEEecCCHHHHHh
Confidence 899999999999875
No 231
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-35 Score=323.05 Aligned_cols=192 Identities=27% Similarity=0.434 Sum_probs=160.9
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------eE
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------KK 661 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------~i 661 (1065)
++++|+++.|++ .++++| |++|++|++++|+||+|||||||+++|.|.++|++|+| .++| .+
T Consensus 2 l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADYGG--------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI-TLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEeCC--------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCCcE
Confidence 688999999963 358999 99999999999999999999999999999999999999 8877 37
Q ss_pred EEEecCCCCCC-CcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHH
Q 001505 662 AYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1065)
Q Consensus 662 ayv~Q~pwif~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLAR 733 (1065)
+|++|++.++. .|++||+.++.. .+ +++.+++++..+|.+.. ..+..+||||||||++|||
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHH
Confidence 99999999886 699999987532 11 23445556666554332 2345789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEe--CCEEEEecCH
Q 001505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMK--DGKIEQSGKY 803 (1065)
Q Consensus 734 Aly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~--~G~I~e~Gt~ 803 (1065)
|+.++|+++||||||++||+.+.+.+ .+.++.+. .++|+|+|||+++.+. .||+|++|+ +|+|++.++.
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQM-QTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999998766 45666653 3799999999999875 599999998 5999998764
No 232
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=328.76 Aligned_cols=215 Identities=21% Similarity=0.320 Sum_probs=170.4
Q ss_pred cEEEeeeEEEeccccccc--CCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------
Q 001505 590 AIDIEAGEYAWDAREENF--KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~--~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------- 659 (1065)
.++++|++++|+.....+ .....+++| ||+|++||+++|+|++|||||||+++|+|+++|.+|+| .++|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i-~~~g~~l~~~~ 83 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL-YYQGQDLLKAD 83 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE-EECCEEcCcCC
Confidence 589999999997421000 012457889 99999999999999999999999999999999999998 7776
Q ss_pred ---------eEEEEecCCC--CC-CCcHHHHHhcCc----ccc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 ---------KKAYVPQSSW--IQ-TGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 ---------~iayv~Q~pw--if-~gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
+++||+|+|. +. ..||.+|+..+. ..+ +++..++++.++|.++. ......
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCc
Confidence 4899999983 33 359999986321 111 23455666666664321 122456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~ 796 (1065)
.||||||||++||||+..+|+++|+|||||+||+.+.+++++ .++.+.+ +.|+|+|||+++.+. .||+|++|++|+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN-LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR 232 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 899999999999999999999999999999999999888765 5655533 789999999999996 599999999999
Q ss_pred EEEecCHHHHHhhcchHHHH
Q 001505 797 IEQSGKYEDLIADQNSELVR 816 (1065)
Q Consensus 797 I~e~Gt~~eL~~~~~~~~~~ 816 (1065)
|+|.|+.+++.++....|.+
T Consensus 233 ive~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 233 CVEKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EEEECCHHHHhcCCCCHHHH
Confidence 99999999998733344544
No 233
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-35 Score=329.84 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=168.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc----CCCCcEEEECC-----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHG----- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~----~~~G~i~~v~g----- 659 (1065)
.++++|++++|+... ....+++| ||+|++||+++|+|+||||||||+++|+|+++ +++|+| .++|
T Consensus 3 ~L~v~~l~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i-~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDES----APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL-EFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCCC----ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE-EECCEECCc
Confidence 378999999997530 11358999 99999999999999999999999999999997 488998 8877
Q ss_pred ------------eEEEEecCCC--C-CCCcHHHHHhcC----ccc----chHHHHHHHHHhcchHHHHhhcCCCCccccC
Q 001505 660 ------------KKAYVPQSSW--I-QTGTIRENILFG----KDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1065)
Q Consensus 660 ------------~iayv~Q~pw--i-f~gTIreNIlfG----~~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe 716 (1065)
.++||+|+|. + ..-|+.+|+... ... ++++..+.++..+|.+.. .....
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~ 149 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDV 149 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 2899999995 2 235777665421 111 223455666666664321 12345
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEe
Q 001505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMK 793 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~ 793 (1065)
...+||||||||++||||+..+|+++|+||||||||+.+...+.+ .++.+. .++|+|+|||+++.+. .||+|++|+
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~-lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~ 228 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE-LLLELQQKENMALVLITHDLALVAEAAHKIIVMY 228 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 677999999999999999999999999999999999999887754 565554 3789999999999984 699999999
Q ss_pred CCEEEEecCHHHHHhhcchHHHH
Q 001505 794 DGKIEQSGKYEDLIADQNSELVR 816 (1065)
Q Consensus 794 ~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1065)
+|+|+|.|+.+++.++....|.+
T Consensus 229 ~G~ive~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 229 AGQVVETGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCEEEEECCHHHHhhCCCChHHH
Confidence 99999999999998744444543
No 234
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1e-34 Score=321.74 Aligned_cols=207 Identities=24% Similarity=0.355 Sum_probs=166.6
Q ss_pred cEEEeeeEEEeccccccc-CCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 590 AIDIEAGEYAWDAREENF-KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~-~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
.|+++|++++|+...... ....++++| |+++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL-LIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCch
Confidence 489999999996320000 012468999 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCCC--CC-CCcHHHHHhcCcc----cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 -----KKAYVPQSSW--IQ-TGTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 -----~iayv~Q~pw--if-~gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
.++|++|+|. ++ +-|+.||+.++.. ++ +++.+++++.++|.++.. .....+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~ 152 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----------SYYPHMLAP 152 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----------hcCchhcCH
Confidence 3899999985 33 3589999875321 11 234556677777643221 123458999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEe
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~ 800 (1065)
|||||++||||++++|+++||||||++||+++.+.+ .+.+..+. .++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQL-INLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 999999999999999999999999999999997765 55676654 37899999999999876 999999999999999
Q ss_pred cCHHHHHh
Q 001505 801 GKYEDLIA 808 (1065)
Q Consensus 801 Gt~~eL~~ 808 (1065)
|+++++.+
T Consensus 232 ~~~~~~~~ 239 (267)
T PRK15112 232 GSTADVLA 239 (267)
T ss_pred CCHHHHhc
Confidence 99999986
No 235
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.1e-34 Score=318.11 Aligned_cols=205 Identities=25% Similarity=0.395 Sum_probs=173.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEec
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~Q 666 (1065)
.++++|++++|++ .+++++ ||+|++||+++|+|++|||||||+++|.|+.+|.+|+| .++| .++|++|
T Consensus 4 ~l~~~~l~~~~~~--------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~~~~~i~~v~q 74 (251)
T PRK09544 4 LVSLENVSVSFGQ--------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-KRNGKLRIGYVPQ 74 (251)
T ss_pred EEEEeceEEEECC--------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCccCEEEecc
Confidence 4889999999964 358999 99999999999999999999999999999999999999 8887 5999999
Q ss_pred CCCCCC---CcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 001505 667 SSWIQT---GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYI 743 (1065)
Q Consensus 667 ~pwif~---gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlL 743 (1065)
+|.++. .|+++|+.+....++++..++++.+++.+.+. .....||||||||++||||++++|+++|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lll 143 (251)
T PRK09544 75 KLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLV 143 (251)
T ss_pred ccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998765 48999987754445567788888888765443 2356899999999999999999999999
Q ss_pred EeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHhhcchHHHHHH
Q 001505 744 FDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1065)
Q Consensus 744 LDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~ 818 (1065)
|||||++||+.+.+.+. +.++.+.+ ++|+|+|||+++.+. .||+|++|++ +|++.|+++|+.+ ...+.++.
T Consensus 144 LDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~~~~ 217 (251)
T PRK09544 144 LDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFISMF 217 (251)
T ss_pred EeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHHHHh
Confidence 99999999999987664 56665543 789999999999975 5999999965 7999999999864 34444443
No 236
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1e-34 Score=321.72 Aligned_cols=214 Identities=25% Similarity=0.337 Sum_probs=168.9
Q ss_pred cEEEeeeEEEeccccc-ccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------
Q 001505 590 AIDIEAGEYAWDAREE-NFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~-~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------- 660 (1065)
.|+++|+++.|+.... ..+.+.++++| |+++++||+++|+|++|||||||+++|.|.++|.+|+| .++|.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i-~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV-SWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEeccccCh
Confidence 3789999999974100 00012568999 99999999999999999999999999999999999998 87763
Q ss_pred ---------EEEEecCCC--C-CCCcHHHHHhcCc----ccch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 661 ---------KAYVPQSSW--I-QTGTIRENILFGK----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 661 ---------iayv~Q~pw--i-f~gTIreNIlfG~----~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
++|++|++. + .+.|++||+.+.. ..+. ++.+++++.+++..+ ........
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~ 151 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQ 151 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCcc
Confidence 899999983 3 3579999996531 1111 233444444443211 23556779
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
||||||||++||||+.++|+++||||||++||+++.+.+ .++++.+.+ ++|+|++||+++.++ .||+|++|++|++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~-~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV-IRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH-HHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999997765 456766643 789999999999987 5999999999999
Q ss_pred EEecCHHHHHhhcchHHHH
Q 001505 798 EQSGKYEDLIADQNSELVR 816 (1065)
Q Consensus 798 ~e~Gt~~eL~~~~~~~~~~ 816 (1065)
++.|+.+|+.. ....|..
T Consensus 231 ~~~g~~~~~~~-~~~~~~~ 248 (268)
T PRK10419 231 VETQPVGDKLT-FSSPAGR 248 (268)
T ss_pred eeeCChhhccC-CCCHHHH
Confidence 99999999886 4444433
No 237
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6e-35 Score=329.07 Aligned_cols=185 Identities=26% Similarity=0.389 Sum_probs=157.5
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC------------eEEEEecCCCCCCC-cHH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVPQSSWIQTG-TIR 676 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------------~iayv~Q~pwif~g-TIr 676 (1065)
.++++| ||+|++||+++|+||+|||||||+++|+|+++|++|+| .++| .++|++|++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA-RVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 468888 99999999999999999999999999999999999999 8887 38999999998865 999
Q ss_pred HHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001505 677 ENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1065)
Q Consensus 677 eNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~S 749 (1065)
||+.+... .+ +++.+++++.++|.+.. ..+..+||||||||++||||+.++|+++||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99987422 11 23456666766665432 23456899999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 750 AVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 750 ALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
+||+.+.+.+. +.++.+. +++|+|++||+++.+. .||+|++|++|+|++.|+.+++.+
T Consensus 154 gLD~~~~~~l~-~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIW-DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999987664 5666653 4799999999999986 599999999999999999999876
No 238
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=329.40 Aligned_cols=213 Identities=18% Similarity=0.283 Sum_probs=170.0
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc----CCCCcEEEECC-----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP----RISGAAIKVHG----- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~----~~~G~i~~v~g----- 659 (1065)
.++++|++++|+... ....+++| ||+|++||.++|+|+||||||||+++|+|+.+ +++|+| .++|
T Consensus 3 ~L~v~~l~~~y~~~~----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i-~~~g~~i~~ 77 (330)
T PRK15093 3 LLDIRNLTIEFKTSD----GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM-RFDDIDLLR 77 (330)
T ss_pred eEEEeeeEEEEeCCC----CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE-EECCEECCc
Confidence 478999999996430 12458899 99999999999999999999999999999986 588998 8776
Q ss_pred ------------eEEEEecCCCC---CCCcHHHHHhcCcc-------------cchHHHHHHHHHhcchHHHHhhcCCCC
Q 001505 660 ------------KKAYVPQSSWI---QTGTIRENILFGKD-------------MRQSFYEEVLEGCALNQDIEMWADGDL 711 (1065)
Q Consensus 660 ------------~iayv~Q~pwi---f~gTIreNIlfG~~-------------~d~~~y~~vl~ac~L~~di~~Lp~Gd~ 711 (1065)
.++||+|+|.. ...||.+||..... ..+++..+.++..+|.+.-+
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~------- 150 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD------- 150 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH-------
Confidence 38999999973 24689999964210 01234556677777753211
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCE
Q 001505 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADL 788 (1065)
Q Consensus 712 T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~ 788 (1065)
........||||||||++||||++.+|+++|||||||+||+.+..++. +.++.+.+ +.|+|+|||+++.+. .||+
T Consensus 151 -~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 151 -AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIF-RLLTRLNQNNNTTILLISHDLQMLSQWADK 228 (330)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 123345699999999999999999999999999999999999988775 45666543 789999999999985 5999
Q ss_pred EEEEeCCEEEEecCHHHHHhhcchHHHH
Q 001505 789 VLVMKDGKIEQSGKYEDLIADQNSELVR 816 (1065)
Q Consensus 789 Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1065)
|++|++|+|++.|+.+++.++....|.+
T Consensus 229 i~vm~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 229 INVLYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999999999998634445544
No 239
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=318.97 Aligned_cols=203 Identities=22% Similarity=0.357 Sum_probs=169.1
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC-----CCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-----SGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~-----~G~i~~v~g--- 659 (1065)
+.++++|+++.|+. ..+++| ||++++||.++|+|++|||||||+++|.|+++|. +|+| .++|
T Consensus 6 ~~l~~~nl~~~~~~--------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i-~~~g~~i 76 (261)
T PRK14258 6 PAIKVNNLSFYYDT--------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV-EFFNQNI 76 (261)
T ss_pred ceEEEeeEEEEeCC--------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE-EECCEEh
Confidence 36899999999963 358999 9999999999999999999999999999999985 7877 6654
Q ss_pred ------------eEEEEecCCCCCCCcHHHHHhcCcc---c-c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 ------------KKAYVPQSSWIQTGTIRENILFGKD---M-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~gTIreNIlfG~~---~-d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++|++|++.+++.|++||+.++.. . + +++..++++..++.+.+.. ..+..+.
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~ 149 (261)
T PRK14258 77 YERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSAL 149 (261)
T ss_pred hccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcc
Confidence 3899999999999999999986521 1 1 2234556666666544432 3456778
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeC--
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD-- 794 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~-- 794 (1065)
+||||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+. .++|+|+|||+++.++ .||+|++|++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~-~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE-SLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCC
Confidence 99999999999999999999999999999999999987664 5566543 4799999999999986 5999999999
Q ss_pred ---CEEEEecCHHHHHh
Q 001505 795 ---GKIEQSGKYEDLIA 808 (1065)
Q Consensus 795 ---G~I~e~Gt~~eL~~ 808 (1065)
|++++.|+.+|+.+
T Consensus 229 ~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 229 NRIGQLVEFGLTKKIFN 245 (261)
T ss_pred CcCceEEEeCCHHHHHh
Confidence 99999999999876
No 240
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.3e-34 Score=329.02 Aligned_cols=214 Identities=20% Similarity=0.325 Sum_probs=170.1
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC---CCcEEEECC-----
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~---~G~i~~v~g----- 659 (1065)
..++++|++++|+... .....++| ||+|++||+++|+|+||||||||+++|+|+++|. +|+| .++|
T Consensus 11 ~~L~i~~l~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I-~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD----GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA-TFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecCC----CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEE-EECCEECCc
Confidence 4589999999997430 12458899 9999999999999999999999999999999985 9998 8776
Q ss_pred ------------eEEEEecCCC--C-CCCcHHHHHhcCc----ccchH----HHHHHHHHhcchHHHHhhcCCCCccccC
Q 001505 660 ------------KKAYVPQSSW--I-QTGTIRENILFGK----DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1065)
Q Consensus 660 ------------~iayv~Q~pw--i-f~gTIreNIlfG~----~~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe 716 (1065)
.|+||+|+|. + ...|+.+||.... ..+.+ +..+.++..+ ||++. +.++.
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~-~~~~~ 157 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEAR-KRMKM 157 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChH-HHhcC
Confidence 3899999983 3 3468888885421 12222 2233333333 33332 23567
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEe
Q 001505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMK 793 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~ 793 (1065)
....||||||||++||||++.+|+++|+||||||||+.+...+.+ .++.+.+ +.|+|+|||+++.+. .||+|+||+
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~ 236 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMT-LLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 236 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 788999999999999999999999999999999999999887754 5665543 789999999999986 599999999
Q ss_pred CCEEEEecCHHHHHhhcchHHHH
Q 001505 794 DGKIEQSGKYEDLIADQNSELVR 816 (1065)
Q Consensus 794 ~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1065)
+|+|+|.|+.+++.++....|.+
T Consensus 237 ~G~ive~g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 237 AGRTMEYGNARDVFYQPSHPYSI 259 (330)
T ss_pred CCEEEEECCHHHHHhCCCCHHHH
Confidence 99999999999998744445554
No 241
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.1e-35 Score=314.71 Aligned_cols=202 Identities=27% Similarity=0.418 Sum_probs=157.9
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc---CCCCcEEEECC-------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~---~~~G~i~~v~g------- 659 (1065)
+.++|++|.|++.+ ...++++| |+++++||+++|+||+|||||||+++|.|+++ |.+|+| .++|
T Consensus 4 ~~~~~~~~~~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i-~~~g~~~~~~~ 78 (226)
T cd03234 4 LPWWDVGLKAKNWN----KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI-LFNGQPRKPDQ 78 (226)
T ss_pred ceeecceeeeecCc----cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE-EECCEECChHH
Confidence 57899999997640 13578999 99999999999999999999999999999999 899999 8877
Q ss_pred ---eEEEEecCCCCCCC-cHHHHHhcCcccc--hHHHHHHHHHhcchHHHHhhcCCCCcccc-CCCCCCCHHHHHHHHHH
Q 001505 660 ---KKAYVPQSSWIQTG-TIRENILFGKDMR--QSFYEEVLEGCALNQDIEMWADGDLSVVG-ERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 660 ---~iayv~Q~pwif~g-TIreNIlfG~~~d--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IG-e~G~nLSGGQKQRIaLA 732 (1065)
.++|++|++.++++ |++|||.|+.... ....++..+.. .++ ..++....+.+. ....+||||||||++||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-~~~--~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKR-VED--VLLRDLALTRIGGNLVKGISGGERRRVSIA 155 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHH-HHH--HHHHhhcchhhhcccccCcCHHHHHHHHHH
Confidence 38999999999987 9999998753211 00000000000 001 023333334433 45679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCc--chhhcCCEEEEEeCCEEEEec
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQL--EFLDAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l--~~l~~aD~Ilvl~~G~I~e~G 801 (1065)
||++++|+++||||||++||+.+.+++. +.++.+. +++|+|++||+. +....||+|++|++|+++++|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLV-STLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999987664 4666553 478999999998 346779999999999999876
No 242
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=7.7e-35 Score=313.58 Aligned_cols=190 Identities=31% Similarity=0.447 Sum_probs=159.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|+++.|++.. .....++| |+++++|+.++|+|++|||||||+++|.|.++|++|+| .++|
T Consensus 2 l~~~~l~~~~~~~~----~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGHGS----LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL-KVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccCCC----cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEhHhcCHhH
Confidence 68999999996430 12468899 99999999999999999999999999999999999998 7776
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCcc----cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKD----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
.++|++|+|.++. .|+.||+.++.. .+ +++..++++.+++.++++..| .+||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G 145 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGG 145 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHH
Confidence 3899999999887 799999987642 11 124556666666665554443 589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEeCCEE
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMKDGKI 797 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~~G~I 797 (1065)
||||++||||++++|+++||||||++||+.+.+.+. +.++.+.+ ++|+|++||+++....||+|++|++|++
T Consensus 146 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 146 QKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV-ELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999987764 56766553 7999999999998888999999999986
No 243
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=321.48 Aligned_cols=197 Identities=25% Similarity=0.380 Sum_probs=165.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC--------CCcEEEECCe-
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--------SGAAIKVHGK- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~--------~G~i~~v~g~- 660 (1065)
++++|++++|++ .++++| |++|++||.++|+||+|||||||+++|.|+++|. +|+| .++|.
T Consensus 2 l~~~nl~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i-~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVARRH--------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV-TLNGEP 72 (272)
T ss_pred eEEEEEEEEECC--------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE-EECCEE
Confidence 688999999963 368999 9999999999999999999999999999999998 9998 88772
Q ss_pred ------------EEEEecCCC-CCCCcHHHHHhcCcc-c----------chHHHHHHHHHhcchHHHHhhcCCCCccccC
Q 001505 661 ------------KAYVPQSSW-IQTGTIRENILFGKD-M----------RQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1065)
Q Consensus 661 ------------iayv~Q~pw-if~gTIreNIlfG~~-~----------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe 716 (1065)
++|++|++- +++.|++|||.++.. . ++++.+++++..++ .+..+.
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~ 141 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGR 141 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcC
Confidence 699999975 678999999988631 1 11223344444443 344566
Q ss_pred CCCCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-
Q 001505 717 RGINLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD- 784 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly---------~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~- 784 (1065)
...+||||||||++||||++ .+|+++||||||++||+.+.+.+. +.++.+.+ ++|+|+|||+++.+.
T Consensus 142 ~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tviiisH~~~~~~~ 220 (272)
T PRK13547 142 DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL-DTVRRLARDWNLGVLAIVHDPNLAAR 220 (272)
T ss_pred CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 77899999999999999999 599999999999999999987764 56766543 789999999999985
Q ss_pred cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 785 AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 785 ~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
.||+|++|++|+|++.|+.+++.+
T Consensus 221 ~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 221 HADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred hCCEEEEEECCeEEEecCHHHHcC
Confidence 699999999999999999998865
No 244
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=321.70 Aligned_cols=198 Identities=29% Similarity=0.436 Sum_probs=164.3
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|+++ .++++| |++|++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 6 ~l~~~~l~~~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRNG-------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-SILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecCC-------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEhHHhhcc
Confidence 58999999999643 468999 99999999999999999999999999999999999999 8887
Q ss_pred -eEEEEecCCCC---CCCcHHHHHhcCcc-----------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 -KKAYVPQSSWI---QTGTIRENILFGKD-----------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 -~iayv~Q~pwi---f~gTIreNIlfG~~-----------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
.++|++|+|.+ +..+++||+.++.. .++++.+++++..+|.+... .+..+||||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG 146 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGG 146 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHH
Confidence 38999999865 45689999976421 12234555666666654322 234579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecC
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt 802 (1065)
||||++||||++++|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++.+ ..||+++++ +|++++.|+
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l-~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~ 224 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI-ISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGP 224 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecC
Confidence 99999999999999999999999999999998776 45676654 478999999999886 569999777 899999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
++++.+
T Consensus 225 ~~~~~~ 230 (272)
T PRK15056 225 TETTFT 230 (272)
T ss_pred HHhccC
Confidence 999864
No 245
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-34 Score=316.66 Aligned_cols=216 Identities=19% Similarity=0.328 Sum_probs=171.7
Q ss_pred ccEEEeeeEEEecccccc------------cCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEE
Q 001505 589 VAIDIEAGEYAWDAREEN------------FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI 655 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~------------~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~ 655 (1065)
..|+++|++..|.....+ .....+++++ |++|++||.++|+||+|||||||+++|+|+++|.+|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I- 81 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV- 81 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-
Confidence 458899998888763110 1123457888 99999999999999999999999999999999999999
Q ss_pred EECCeEEEEecCCCCCC-CcHHHHHhcCc---ccchHHH----HHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHH
Q 001505 656 KVHGKKAYVPQSSWIQT-GTIRENILFGK---DMRQSFY----EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1065)
Q Consensus 656 ~v~g~iayv~Q~pwif~-gTIreNIlfG~---~~d~~~y----~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQ 727 (1065)
.++|.++|++|++++.+ .|++|||.++. ..+.+.. +++++..++.+ .+.....+|||||||
T Consensus 82 ~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~q 150 (264)
T PRK13546 82 DRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGE-----------FIYQPVKKYSSGMRA 150 (264)
T ss_pred EECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHH
Confidence 99999999999998764 69999998642 1222222 23333333332 234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHH
Q 001505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 728 RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
|++||||++++|+|+||||||++||+.+.+.+.+ .+..+. .++|+|++||+++.++. ||+|++|++|+|++.|++++
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 229 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLD-KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDD 229 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999877654 454443 47999999999999865 99999999999999999999
Q ss_pred HHhhcchHHHHHH
Q 001505 806 LIADQNSELVRQM 818 (1065)
Q Consensus 806 L~~~~~~~~~~l~ 818 (1065)
+.+ ....|.+..
T Consensus 230 ~~~-~~~~~~~~~ 241 (264)
T PRK13546 230 VLP-KYEAFLNDF 241 (264)
T ss_pred HHH-HhHHHHHHH
Confidence 987 444444433
No 246
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.3e-34 Score=332.77 Aligned_cols=192 Identities=27% Similarity=0.423 Sum_probs=159.9
Q ss_pred eeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------------
Q 001505 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------- 659 (1065)
Q Consensus 595 n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------------- 659 (1065)
|++++|++. .+ | |+++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 4 ~l~~~~~~~---------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGDF---------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI-VLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECCE---------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECccCccccccch
Confidence 678888532 24 7 99999999999999999999999999999999999998 7765
Q ss_pred ---eEEEEecCCCCCC-CcHHHHHhcCccc-c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM-R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 ---~iayv~Q~pwif~-gTIreNIlfG~~~-d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|++.+|. .|++|||.|+... + +++.+++++..+|.+. ......+||||||||++
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRva 141 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVA 141 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHH
Confidence 2789999999986 5999999987431 1 2234555555555433 34445789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHH
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
||||+..+|+++|||||||+||+.+.+.+. +.++.+.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEIL-PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999987764 45666543 789999999999875 59999999999999999999998
Q ss_pred hh
Q 001505 808 AD 809 (1065)
Q Consensus 808 ~~ 809 (1065)
.+
T Consensus 221 ~~ 222 (354)
T TIGR02142 221 AS 222 (354)
T ss_pred cC
Confidence 63
No 247
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.6e-35 Score=290.79 Aligned_cols=192 Identities=29% Similarity=0.401 Sum_probs=168.9
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+|+||+..|++. .+.|+| |++|++||++-++||||+|||||+++|.++..|++|+| .++|
T Consensus 2 I~f~~V~k~Y~~g-------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i-~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPGG-------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI-LVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCCC-------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE-EECCeecccccccc
Confidence 7899999999865 679999 99999999999999999999999999999999999999 8887
Q ss_pred ------eEEEEecCCCC-CCCcHHHHHhcCcc-----c--chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWI-QTGTIRENILFGKD-----M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwi-f~gTIreNIlfG~~-----~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
+||+|.|+--| .+-|+.||+.|.-. - -+++..++++..+|.+-...||. .||||+
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGE 142 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGE 142 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchH
Confidence 59999999875 57899999998532 1 13466678899999988888884 799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhcC-CEEEEEeCCEEEEecC
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAA-DLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~l~~a-D~Ilvl~~G~I~e~Gt 802 (1065)
+||++||||+..+|+++|=||||.+||+.++..|++ .+.++ ..|.||++.||+.+.+... -+++.+++|+++....
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999998875 45444 3599999999999998775 5899999999987543
No 248
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.2e-34 Score=303.98 Aligned_cols=175 Identities=26% Similarity=0.466 Sum_probs=149.4
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc--cCCCCcEEEECC-------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~--~~~~G~i~~v~g------- 659 (1065)
.++++|++++|+.... ....++++| |+++++||.++|+||+|||||||+++|.|++ +|.+|+| .++|
T Consensus 3 ~l~~~~ls~~~~~~~~--~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i-~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPS--KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV-LINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCC--cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE-EECCEeCchHh
Confidence 4899999999975200 012568999 9999999999999999999999999999999 9999999 8876
Q ss_pred ---eEEEEecCCCCCC-CcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 660 ---KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 660 ---~iayv~Q~pwif~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
.++|++|++.++. .|++|||.++.... .||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---------------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKLR---------------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHHHHH
Confidence 3899999999886 59999997642110 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcc-hh-hcCCEEEEEeCCEEEEec
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLE-FL-DAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~-~l-~~aD~Ilvl~~G~I~e~G 801 (1065)
.++|+++||||||++||+++.+.+. +.++.+. +++|+|++||+++ .+ ..||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999987664 5676654 4899999999996 44 469999999999998764
No 249
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-34 Score=299.10 Aligned_cols=157 Identities=32% Similarity=0.557 Sum_probs=141.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .+++++ |+++++||.++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGK--------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI-KVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECC--------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEEcccchHhh
Confidence 468999999963 358999 99999999999999999999999999999999999998 8876
Q ss_pred --eEEEEecCCCCCCC-cHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001505 660 --KKAYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1065)
Q Consensus 660 --~iayv~Q~pwif~g-TIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly 736 (1065)
.++|++|+|.++.+ |++||+. ||||||||++||||++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~ 111 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALL 111 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHH
Confidence 37999999999876 9999984 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 737 ~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
++|+++||||||++||+++.+.+. +.++.+. +++|+|++||+.+.+. .||+|++|++|++
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999987764 5666654 4689999999999887 6999999999974
No 250
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.2e-34 Score=312.22 Aligned_cols=185 Identities=28% Similarity=0.376 Sum_probs=153.4
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC----CCCcEEEECC-----------eEEEEecCCC-CCC--Cc
Q 001505 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR----ISGAAIKVHG-----------KKAYVPQSSW-IQT--GT 674 (1065)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~----~~G~i~~v~g-----------~iayv~Q~pw-if~--gT 674 (1065)
++| |+++++|++++|+||+|||||||+++|.|+++| .+|+| .++| .++|++|+|. .++ .|
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI-LLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE-EECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 567 899999999999999999999999999999998 89999 8876 4899999995 343 69
Q ss_pred HHHHHhcCcc-----c--chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001505 675 IRENILFGKD-----M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1065)
Q Consensus 675 IreNIlfG~~-----~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp 747 (1065)
++||+.++.. . ++++++++++.+++.+ + .+.......+||||||||++||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999865321 1 1234556666666541 1 1334566789999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 748 FSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 748 ~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
|++||+.+.+.+ .+.++.+.+ ++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 153 t~~LD~~~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 153 TTDLDVVNQARV-LKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred ccccCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999997765 456666543 789999999999985 599999999999999999999986
No 251
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-34 Score=307.40 Aligned_cols=183 Identities=29% Similarity=0.426 Sum_probs=152.5
Q ss_pred eeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------------
Q 001505 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------- 659 (1065)
Q Consensus 595 n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------------- 659 (1065)
|++++|++. .+ | ||++++ |+++|+||+|||||||+++|+|+++|.+|+| .++|
T Consensus 5 ~l~~~~~~~--------~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRLPDF--------TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEecCCe--------ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEecccccchhhhhh
Confidence 788888643 23 7 999999 9999999999999999999999999999998 7765
Q ss_pred ---eEEEEecCCCCCC-CcHHHHHhcCccc-----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 ---KKAYVPQSSWIQT-GTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 ---~iayv~Q~pwif~-gTIreNIlfG~~~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|++.++. .|++|||.++... ++++.++.++..++.+ .......+||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 141 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVA 141 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHH
Confidence 3899999999985 6999999876432 2234455555555433 344567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
||||++++|+++||||||++||+.+.+.+. +.++.+.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 142 LARALAAQPELLLLDEPFSALDRALRLQLL-PELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999987664 56666543 789999999999885 59999999999998876
No 252
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8.1e-34 Score=312.18 Aligned_cols=202 Identities=22% Similarity=0.328 Sum_probs=162.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|+++.|++ ..+++| |++|++|++++|+|++|||||||+++|.|.++|.+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSYGG--------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA-TYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEeCC--------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EEecccccccccc
Confidence 4899999999964 357899 99999999999999999999999999999999999998 7754
Q ss_pred -------------eEEEEecCCC--C-CCCcHHHHHhcC-----cccchHHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 -------------KKAYVPQSSW--I-QTGTIRENILFG-----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 -------------~iayv~Q~pw--i-f~gTIreNIlfG-----~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
.++|++|+|. + +..|+.|||.+. .....+..+ ...+.++.+.-+ .+......
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~l~~l~l~-~~~~~~~~ 146 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRA------AAHDWLEEVEID-PTRIDDLP 146 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHH------HHHHHHHHcCCC-hhhhhcCc
Confidence 2799999984 2 356899998642 111111111 112334444221 24556778
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeCC
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~G 795 (1065)
.+||||||||++||||++++|+++||||||++||+.+.+.+. +.++... .++|+|+|||+++.+. .||++++|++|
T Consensus 147 ~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225 (253)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 899999999999999999999999999999999999987664 5666554 3789999999999987 59999999999
Q ss_pred EEEEecCHHHHHh
Q 001505 796 KIEQSGKYEDLIA 808 (1065)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1065)
++++.|+.+++..
T Consensus 226 ~i~~~~~~~~~~~ 238 (253)
T TIGR02323 226 RVVESGLTDQVLD 238 (253)
T ss_pred EEEEECCHHHHhc
Confidence 9999999999875
No 253
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-34 Score=302.14 Aligned_cols=173 Identities=24% Similarity=0.383 Sum_probs=148.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc--cCCCCcEEEECC-------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~--~~~~G~i~~v~g------- 659 (1065)
.++++|+++.|++.. ...++++| |+++++||+++|+||+|||||||+++|.|.+ +|.+|+| .++|
T Consensus 3 ~l~~~~l~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i-~~~g~~~~~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI-LINGRPLDKNF 77 (192)
T ss_pred EEEEeeeEEEecCCC----CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE-EECCEehHHHh
Confidence 488999999997520 12468999 9999999999999999999999999999986 4899999 8876
Q ss_pred --eEEEEecCCCCCC-CcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001505 660 --KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1065)
Q Consensus 660 --~iayv~Q~pwif~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly 736 (1065)
.++|++|++-++. .|++||+.++... + +||||||||++||||++
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL---------R------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH---------h------------------------cCCHHHhHHHHHHHHHh
Confidence 4899999998877 5999999864210 0 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcch--hhcCCEEEEEeC-CEEEEec
Q 001505 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF--LDAADLVLVMKD-GKIEQSG 801 (1065)
Q Consensus 737 ~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~--l~~aD~Ilvl~~-G~I~e~G 801 (1065)
++|+++||||||++||+.+.+.+.+ .++.+. +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVR-FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHH-HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999877654 566543 47999999999984 567999999999 9999876
No 254
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-34 Score=296.55 Aligned_cols=157 Identities=40% Similarity=0.648 Sum_probs=143.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|+++.|++. ..+.++| |+++++|+.++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~~------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGR------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhhhcCHHH
Confidence 4689999999753 2368888 99999999999999999999999999999999999998 8877
Q ss_pred ---eEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001505 660 ---KKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1065)
Q Consensus 660 ---~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly 736 (1065)
.++|++|+|.+++.|++||+ ||||||||++||||++
T Consensus 74 ~~~~i~~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~ 112 (171)
T cd03228 74 LRKNIAYVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALL 112 (171)
T ss_pred HHhhEEEEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHh
Confidence 37999999999999999998 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCE
Q 001505 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1065)
Q Consensus 737 ~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~ 796 (1065)
++|+++||||||++||+.+.+++ .+.++.+.+++|+|++||+++.++.||++++|++|+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 113 RDPPILILDEATSALDPETEALI-LEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHH-HHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999997766 456776666799999999999998899999999985
No 255
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-34 Score=303.59 Aligned_cols=179 Identities=23% Similarity=0.345 Sum_probs=149.4
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc---CCCCcEEEECC------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHG------ 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~---~~~G~i~~v~g------ 659 (1065)
.+.++|++|.|+... .+.++++| |+++++||+++|+|++|||||||+++|.|.++ |.+|+| .++|
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i-~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKGR----SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccCC----CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE-EECCEECccc
Confidence 368899999998631 23568999 99999999999999999999999999999999 899998 8876
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
.++|++|++.++. .|++|||.++.... ..++...||||||||++||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIA 130 (202)
T ss_pred hhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHH
Confidence 3899999998876 59999998763210 2234568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCC-cchh-hcCCEEEEEeCCEEEEec
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQ-LEFL-DAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~-l~~l-~~aD~Ilvl~~G~I~e~G 801 (1065)
||++++|+++||||||++||+++.+.+. +.++.+.+ +.|+|++||+ .+.+ ..||+|++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999987764 56766644 4677776655 4554 679999999999998765
No 256
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.3e-34 Score=317.52 Aligned_cols=199 Identities=30% Similarity=0.441 Sum_probs=172.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++..|+.+ ..+|+| ||+|++|+++|++||+|||||||+++|+|.+.|++|+| .++|
T Consensus 4 ~i~~~~l~k~~~~~-------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i-~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGGD-------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI-LVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEeCCC-------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EEcCEeCccCHHH
Confidence 47889999999732 478999 99999999999999999999999999999999999999 9988
Q ss_pred ---eEEEEecCCCCC-CCcHHHHHhcCc-----c--cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH
Q 001505 660 ---KKAYVPQSSWIQ-TGTIRENILFGK-----D--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1065)
Q Consensus 660 ---~iayv~Q~pwif-~gTIreNIlfG~-----~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR 728 (1065)
++||+||+|-++ +-|++||+.|-. + .++++.+++++.-+|.++- ..+-..||||||||
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqr 144 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQR 144 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHH
Confidence 489999999765 679999998732 2 2356778888888876521 34457899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-C-cEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHH
Q 001505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-Q-KTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 729 IaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~-kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
++||+|+..+|++||||||||+||+.....+ .+.|+.+.+ + +||+++||.++.+.. ||+|++|++|+++..|+.++
T Consensus 145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~-~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~ 223 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSGLDPESRREI-WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEE 223 (293)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCHHHHHHH-HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999997765 567776654 4 799999999999876 99999999999999999999
Q ss_pred HHh
Q 001505 806 LIA 808 (1065)
Q Consensus 806 L~~ 808 (1065)
+..
T Consensus 224 l~~ 226 (293)
T COG1131 224 LKE 226 (293)
T ss_pred HHH
Confidence 765
No 257
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=302.00 Aligned_cols=447 Identities=18% Similarity=0.188 Sum_probs=296.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---ChHHHH---HHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 001505 333 LTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGIII---NMINVDVERIGDFFL-YIHRIWLLPVQVFLA 405 (1065)
Q Consensus 333 l~~~~~~~~~~r~~~~iR~~L~~~iy~K~L~ls~~~~---~~G~iv---nlms~D~~~i~~~~~-~~~~~w~~pl~i~~a 405 (1065)
+......|...-+..|.|..+..-+|++-++-....+ ..+.|- .+++.|++++..... ....+..+|+.++.-
T Consensus 137 ~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y 216 (659)
T KOG0060|consen 137 LLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYY 216 (659)
T ss_pred HHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehh
Confidence 3344455667778899999999999888776322111 111222 478889999866553 344566677777777
Q ss_pred HHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH
Q 001505 406 LVILYKNLGAAPAFAALF-STIFVMVSNTPLANRQERFHSMIMEA-KDARIKATSETLKSMRVLKLLSWEQEFLKKLLRL 483 (1065)
Q Consensus 406 l~lL~~~lg~~~~l~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~-~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~ 483 (1065)
.+.++...|| ...+.+. -.++-.+++..+.+-+.+...+..+. -|-|- .-+++..|-..|-+|+-++.-...++..
T Consensus 217 ~~~l~~s~g~-~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy-~h~rlr~NaE~iAFY~g~~~E~~~~~~~ 294 (659)
T KOG0060|consen 217 TFRLFESAGW-LGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRY-KHSRLRVNAEEIAFYRGGQVEHQRTDQR 294 (659)
T ss_pred hhHHhhhcCc-ccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhh-heeeeeecchhhhhhccCchHHHHHHHH
Confidence 7888888773 3332222 22233444444443333333333222 23343 3356777888899998765433333332
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---hcCCcCHHHHHHHHH----HHHHHHHHHHHHHHH
Q 001505 484 REIERDSLKKYLYT----CSAIAFLFWASPTLVSVITFGVCIL---LKTPLTSGAVLSALA----TFRILQEPIYNLPEL 552 (1065)
Q Consensus 484 R~~E~~~l~~~~~~----~~~~~~~~~~~p~~v~~~~f~~~~~---~~~~Lt~~~~ft~l~----l~~~l~~pl~~l~~~ 552 (1065)
-+.-.+.+++.... ..+..++-+...+ ++.+..+.-.+ ..+.+++...+..++ .+.-+...+..+...
T Consensus 295 f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~i-lsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~ 373 (659)
T KOG0060|consen 295 FRNLVQHLRELMSFRFWLGFIDNIFDYLGGI-LSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDL 373 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-heeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 22222222222111 1111111111111 11100000011 123577777766553 344455566667777
Q ss_pred HHHHHHHHHHHHHHHHHhcccC--C-------------CCCCC-------CCCCCCCCccEEEeeeEEEecccccccCCC
Q 001505 553 ISMIAQTKVSLYRIQEFIKEDN--Q-------------KKPIT-------EPTSKASDVAIDIEAGEYAWDAREENFKKP 610 (1065)
Q Consensus 553 i~~~~~a~vs~~RI~~fL~~~e--~-------------~~~~~-------~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~ 610 (1065)
-..+.+-..-..||.++.+.-. . .+... .....+.+..|++++++++-|++
T Consensus 374 ~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~------- 446 (659)
T KOG0060|consen 374 SRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN------- 446 (659)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-------
Confidence 7777777778889888874211 0 00000 01112345789999999998764
Q ss_pred ccccc-C-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEE--CC---eEEEEecCCCCCCCcHHHHHhcCc
Q 001505 611 TIKLT-D-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV--HG---KKAYVPQSSWIQTGTIRENILFGK 683 (1065)
Q Consensus 611 ~~~L~-~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v--~g---~iayv~Q~pwif~gTIreNIlfG~ 683 (1065)
.++|. | |++|+.|+.+.|+||+|||||||++.+.|..+..+|++ .- +| .+-|+||.|+.--||+||-+.+..
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l-~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~ 525 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL-TKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPL 525 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeE-EecccCCCCceEEecCCCCccccchhheeeccC
Confidence 34444 4 99999999999999999999999999999999999998 54 34 388999999999999999999971
Q ss_pred --------ccchHHHHHHHHHhcchHHHHhhcCCCCcc-ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHh
Q 001505 684 --------DMRQSFYEEVLEGCALNQDIEMWADGDLSV-VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754 (1065)
Q Consensus 684 --------~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~-IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~ 754 (1065)
-.++++..+.++-.+|.+-++.. +|.|++ +=|-+..||+|+|||+|.||-+|.+|++-+|||+|||||.+
T Consensus 526 ~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~d 604 (659)
T KOG0060|consen 526 KAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTED 604 (659)
T ss_pred ccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHH
Confidence 23678999999999998766554 566655 45778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeC
Q 001505 755 TGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1065)
Q Consensus 755 t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~ 794 (1065)
+|..+.+.|=. .+-|.|-|.||-+.-+.-|.++-|+.
T Consensus 605 vE~~~Yr~~r~---~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 605 VEGALYRKCRE---MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHH---cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 99998876532 37899999999999999999999985
No 258
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2e-33 Score=308.86 Aligned_cols=197 Identities=23% Similarity=0.304 Sum_probs=159.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCc--ccCCCCcEEEECC-------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe--~~~~~G~i~~v~g------- 659 (1065)
.++++|+++.|++ .++++| |+++++||+++|+|++|||||||+++|.|. ++|++|+| .++|
T Consensus 7 ~l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i-~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASVNE--------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI-LFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEeCC--------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE-EECCEEcccCC
Confidence 5899999999963 358999 999999999999999999999999999998 58999998 7766
Q ss_pred -------eEEEEecCCCCCCC-cHHHHHhcCccc----------c----hHHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 -------KKAYVPQSSWIQTG-TIRENILFGKDM----------R----QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 -------~iayv~Q~pwif~g-TIreNIlfG~~~----------d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
.++|++|++.++.+ |+++|+.++... + .++..++++.+++.+. ..+..
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 147 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS----------FLSRN 147 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh----------hhccc
Confidence 27899999998875 899998764210 1 1223444555444321 12233
Q ss_pred CC-CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc--CCEEEEEe
Q 001505 718 GI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA--ADLVLVMK 793 (1065)
Q Consensus 718 G~-nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~--aD~Ilvl~ 793 (1065)
.. .||||||||++||||++++|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+.. ||+|++|+
T Consensus 148 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~ 226 (252)
T CHL00131 148 VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQ 226 (252)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEe
Confidence 33 59999999999999999999999999999999999987764 5676654 47999999999999875 89999999
Q ss_pred CCEEEEecCHHHH
Q 001505 794 DGKIEQSGKYEDL 806 (1065)
Q Consensus 794 ~G~I~e~Gt~~eL 806 (1065)
+|++++.|+++++
T Consensus 227 ~G~i~~~~~~~~~ 239 (252)
T CHL00131 227 NGKIIKTGDAELA 239 (252)
T ss_pred CCEEEEecChhhh
Confidence 9999999998743
No 259
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-34 Score=295.79 Aligned_cols=158 Identities=37% Similarity=0.494 Sum_probs=141.5
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
|+++|++++|+. .+++++ |+++++||.++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 1 i~~~~l~~~~~~--------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQ--------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI-LIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECC--------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccchhH
Confidence 468999999964 368999 99999999999999999999999999999999999998 7766
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHH
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLAR 733 (1065)
.++|++|+|.++. .|++||+.+. ||||||||++|||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~ 113 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALAR 113 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHH
Confidence 3789999999885 5999999764 9999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCE
Q 001505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGK 796 (1065)
Q Consensus 734 Aly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~ 796 (1065)
|+.++|+++||||||++||+.+...+. +.++.+.+ ++|+|++||+++.++ .||+|++|++|+
T Consensus 114 al~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 114 ALAMDPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999987664 56665544 589999999999997 599999999985
No 260
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7.8e-34 Score=307.82 Aligned_cols=180 Identities=32% Similarity=0.461 Sum_probs=148.7
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------EEEEecCCCCCC-CcHHHHHhcCc
Q 001505 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQT-GTIRENILFGK 683 (1065)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------iayv~Q~pwif~-gTIreNIlfG~ 683 (1065)
++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|. .+|++|++-++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV-ILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 356 89999999999999999999999999999999999999 88873 489999998886 69999998752
Q ss_pred -----ccch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHh
Q 001505 684 -----DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAH 754 (1065)
Q Consensus 684 -----~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~ 754 (1065)
..++ ++.++.++.+++.+.. .....+||||||||++||||++++|+++||||||++||+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAA-----------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHH-----------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 1222 2344556666554332 3345689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHH
Q 001505 755 TGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 755 t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL 806 (1065)
+.+.+. +.+..+. .++|+|+|||+++.+. .||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQ-EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 987764 5566554 3789999999999875 5999999999999998876554
No 261
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-33 Score=326.24 Aligned_cols=208 Identities=21% Similarity=0.284 Sum_probs=169.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCC
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~p 668 (1065)
.++++|++|.|+.. ...++|+| ||++++|++++|+||+|||||||+++|.|+++|.+|+| .++|...++.+.+
T Consensus 21 mL~lknL~~~~~~~-----~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI-~I~G~~~~i~~~~ 94 (549)
T PRK13545 21 FDKLKDLFFRSKDG-----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-DIKGSAALIAISS 94 (549)
T ss_pred eeEEEEEEEecCCC-----ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE-EECCEeeeEEecc
Confidence 58889999988764 33568999 99999999999999999999999999999999999999 9999877777666
Q ss_pred CCC-CCcHHHHHhcCcc---cchH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001505 669 WIQ-TGTIRENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1065)
Q Consensus 669 wif-~gTIreNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ad 740 (1065)
.++ ..|++|||.++.. .+++ +..++++.+++.+.+. ....+||||||||++||||+.++|+
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHHHHHhCCC
Confidence 554 4699999987431 2222 2345666666654433 3457899999999999999999999
Q ss_pred EEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHHhhcchHHHH
Q 001505 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816 (1065)
Q Consensus 741 IlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1065)
++||||||++||+.+.+.++ +.++.+. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.. .-..|.+
T Consensus 164 LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~-~~~~~~~ 239 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD-HYDEFLK 239 (549)
T ss_pred EEEEECCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh-hHHHHHH
Confidence 99999999999999987765 4565543 47899999999999855 99999999999999999999987 4344444
No 262
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=292.12 Aligned_cols=204 Identities=28% Similarity=0.448 Sum_probs=173.7
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~-------- 660 (1065)
-++++|++-.|.. ..+|++ ||++++||+++++|++|+||||||++|.|..++.+|+| ..+|+
T Consensus 3 mL~v~~l~~~YG~--------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I-~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGYGK--------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI-IFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecccc--------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-EECCeecCCCCHH
Confidence 3688999999974 478999 99999999999999999999999999999999999999 88883
Q ss_pred ------EEEEecCCCCC-CCcHHHHHhcCcccchH-HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 661 ------KAYVPQSSWIQ-TGTIRENILFGKDMRQS-FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 661 ------iayv~Q~pwif-~gTIreNIlfG~~~d~~-~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
++||||.-.+| +-||+||+..|....+. +.++ -.+++-.+.||. .......+|.+|||||+|-+|||
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHH
Confidence 89999999998 57999999988543221 1111 113445566663 34456788999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcch-hhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~-l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
|||.++|+++|||||+.+|-|...+.||+ .|+.+.+ +-||++|-++..+ ++-||+.+||++|+|+.+|+.+||.+
T Consensus 149 RALm~~PklLLLDEPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred HHHhcCCCEEEecCCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 99999999999999999999999999975 5666653 5699999999988 67899999999999999999999987
No 263
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=9.3e-34 Score=301.90 Aligned_cols=179 Identities=30% Similarity=0.405 Sum_probs=149.2
Q ss_pred EeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC------------
Q 001505 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (1065)
Q Consensus 593 ~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------------ 659 (1065)
++|+++.|++ .++++| |+++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 i~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKFGD--------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQV-YLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEECC--------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEccccchhhHH
Confidence 4688999863 358999 99999999999999999999999999999999999998 7765
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCccc-------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++|++|+|.++. .|++||+.++..+ .+++.+++++..++.++ ......+||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~ 140 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQ 140 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHH
Confidence 3899999999986 7999999885321 12344556666655433 2334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEE
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM 792 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl 792 (1065)
||++||||++++|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++.+..||+|++|
T Consensus 141 qr~~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 141 QRVALARAILKDPPLILADEPTGSLDPKNRDEV-LDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999997766 45676654 379999999999988889999875
No 264
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-33 Score=339.38 Aligned_cols=198 Identities=26% Similarity=0.408 Sum_probs=167.4
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ .++++| ||++++|++++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 11 ~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYSG--------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 5999999999963 358999 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCcccc---hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDMR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~~d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|++.++. .|++||+.|+.... +++.+++++..+|.++ ...+..+||||||||++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 150 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVE 150 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHH
Confidence 2899999998776 59999999875321 2345555666555422 22345689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
||||+..+|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLF-SRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999987775 4565543 4789999999999875 599999999999999999998865
No 265
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.2e-33 Score=295.46 Aligned_cols=158 Identities=29% Similarity=0.485 Sum_probs=140.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++| ++++ |+++++||.++|+|++|||||||+++|.|+++|++|+| .++|
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI-TLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCccCHH
Confidence 48899998876 4777 99999999999999999999999999999999999998 8876
Q ss_pred -----eEEEEecCC----CCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -----KKAYVPQSS----WIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -----~iayv~Q~p----wif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.++|++|++ ..++.|++||+.++.. ||||||||++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~ 114 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVV 114 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHH
Confidence 389999985 4567899999987531 9999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEE
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I 797 (1065)
||||++++|+++||||||++||+++.+.+ .+.++.+. +++|+|++||+++.++. ||+|++|++|++
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEI-YRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999998766 45676653 47999999999998866 999999999975
No 266
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.7e-34 Score=302.39 Aligned_cols=190 Identities=33% Similarity=0.485 Sum_probs=161.5
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-----------------eEEEEecCCCC-CCCc
Q 001505 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWI-QTGT 674 (1065)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-----------------~iayv~Q~pwi-f~gT 674 (1065)
++| ||+|+.||+..|.|-||||||||++++-|+++|++|+| .++| +++.|.|+--| .+.|
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~i-lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEI-LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceE-EECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 555 99999999999999999999999999999999999999 9988 48999999665 5789
Q ss_pred HHHHHhcCccc----ch---HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001505 675 IRENILFGKDM----RQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1065)
Q Consensus 675 IreNIlfG~~~----d~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp 747 (1065)
|-||..||.+. .+ ++-.++++..+|+..-...| ..||||+|||+.||||+..||||+|+|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----------~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-----------NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-----------ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 99999999764 22 34556777788876655555 47999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcch-hhcCCEEEEEeCCEEEEecCHHHHHhhcchHHHH
Q 001505 748 FSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIADQNSELVR 816 (1065)
Q Consensus 748 ~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~-l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1065)
||||||--....-++.+ .+- -+||+|+|||+++. ++-.|+|-+|+||+|++.||++|++.++..+|-.
T Consensus 192 FSALDPLIR~~mQdeLl-~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 192 FSALDPLIRTEMQDELL-ELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred hhhcChHHHHHHHHHHH-HHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 99999998777644443 322 27999999999976 7889999999999999999999999755555543
No 267
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.2e-33 Score=305.54 Aligned_cols=198 Identities=20% Similarity=0.273 Sum_probs=153.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc--cCCCCcEEEECC--------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG-------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~--~~~~G~i~~v~g-------- 659 (1065)
|+++|+++.|++ .++++| |++|++|++++|+|++|||||||+++|.|.. +|.+|+| .++|
T Consensus 2 i~~~nl~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSVED--------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV-EFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEeCC--------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE-EECCCccccCCH
Confidence 689999999964 358999 9999999999999999999999999999995 6999998 8876
Q ss_pred ------eEEEEecCCCCCCC-cHHHHHhcCc-------c---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 ------KKAYVPQSSWIQTG-TIRENILFGK-------D---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 ------~iayv~Q~pwif~g-TIreNIlfG~-------~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
.++|++|++.++.. |..+|+.+.. . .+. ++.++.++.. .+|+++.+... .
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~ 143 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--N 143 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--C
Confidence 28999999987654 5555543211 0 010 1111222221 23334333221 1
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhc--CCEEEEEeCC
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA--ADLVLVMKDG 795 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~l~~--aD~Ilvl~~G 795 (1065)
.+||||||||++||||++++|+|+||||||++||+.+.+.+ .+.++.+.+ ++|+|++||+++.+.. +|+|++|++|
T Consensus 144 ~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l-~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g 222 (248)
T PRK09580 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIV-ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 222 (248)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECC
Confidence 37999999999999999999999999999999999998766 455665543 6899999999999876 8999999999
Q ss_pred EEEEecCHHHHH
Q 001505 796 KIEQSGKYEDLI 807 (1065)
Q Consensus 796 ~I~e~Gt~~eL~ 807 (1065)
++++.|++++..
T Consensus 223 ~i~~~g~~~~~~ 234 (248)
T PRK09580 223 RIVKSGDFTLVK 234 (248)
T ss_pred eEEEeCCHHHHH
Confidence 999999988553
No 268
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-33 Score=342.68 Aligned_cols=218 Identities=21% Similarity=0.304 Sum_probs=171.9
Q ss_pred ccEEEeeeEEEeccccccc---CCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-----
Q 001505 589 VAIDIEAGEYAWDAREENF---KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~---~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g----- 659 (1065)
..++++|+++.|+.....+ .....+++| ||+|++||+++|+|++|||||||+++|+|..+|++|+| .++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I-~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI-IFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEE-EECCEECCc
Confidence 3599999999996320000 011357888 99999999999999999999999999999999999999 8876
Q ss_pred -----------eEEEEecCCC--CC-CCcHHHHHhcCcc---c-c----hHHHHHHHHHhcchH-HHHhhcCCCCccccC
Q 001505 660 -----------KKAYVPQSSW--IQ-TGTIRENILFGKD---M-R----QSFYEEVLEGCALNQ-DIEMWADGDLSVVGE 716 (1065)
Q Consensus 660 -----------~iayv~Q~pw--if-~gTIreNIlfG~~---~-d----~~~y~~vl~ac~L~~-di~~Lp~Gd~T~IGe 716 (1065)
.++||+|+|. ++ +.||+||+.++.. . + .++..++++.++|.+ ..+ .
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~ 459 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------R 459 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------C
Confidence 3899999984 54 5799999976421 1 1 134556677777743 222 2
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEe
Q 001505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMK 793 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~ 793 (1065)
...+||||||||++||||+..+|+++|||||||+||+.+.+.+. +.|+.+.+ ++|+|+|||+++.+. .||+|++|+
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~-~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~ 538 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII-NLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY 538 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 33579999999999999999999999999999999999988775 56666543 789999999999875 499999999
Q ss_pred CCEEEEecCHHHHHhhcchHHH-HHHH
Q 001505 794 DGKIEQSGKYEDLIADQNSELV-RQMK 819 (1065)
Q Consensus 794 ~G~I~e~Gt~~eL~~~~~~~~~-~l~~ 819 (1065)
+|+|++.|+.+++..+....|. .++.
T Consensus 539 ~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 539 LGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred CCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999999863333443 3444
No 269
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.7e-33 Score=295.24 Aligned_cols=171 Identities=27% Similarity=0.353 Sum_probs=146.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCc--ccCCCCcEEEECC--------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHG-------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe--~~~~~G~i~~v~g-------- 659 (1065)
++++|++++|++ .++++| |+++++||.++|+|++|||||||+++|.|+ ++|.+|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i-~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVGG--------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI-LFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeCC--------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE-EECCEECCcCCH
Confidence 468999999963 368999 999999999999999999999999999999 57999998 8876
Q ss_pred ------eEEEEecCCCCCCC-cHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 660 ------KKAYVPQSSWIQTG-TIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 660 ------~iayv~Q~pwif~g-TIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
.++|++|+|.++++ |+++|+ .. ...+||||||||++||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~la 116 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEIL 116 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHH
Confidence 28999999998875 455444 00 1247999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh--cCCEEEEEeCCEEEEecCHHHHH
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD--AADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~--~aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
||+.++|+++||||||++||+.+.+.+ .++++.+. +++|+|++||+++.+. .||+|++|++|++.+.| ..|+.
T Consensus 117 ral~~~p~illlDEPt~~LD~~~~~~l-~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 117 QLLLLEPDLAILDEPDSGLDIDALRLV-AEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999998766 45666654 3789999999999987 69999999999999999 44554
No 270
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.3e-33 Score=301.43 Aligned_cols=177 Identities=29% Similarity=0.470 Sum_probs=147.5
Q ss_pred eEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------EEEEecCCCC---CCCcHHHHHhcCcc--
Q 001505 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWI---QTGTIRENILFGKD-- 684 (1065)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------iayv~Q~pwi---f~gTIreNIlfG~~-- 684 (1065)
|++++||+++|+|++|||||||+++|.|.++|.+|+| .++|. ++|++|+|.+ ++.|++|||.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV-KVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 4689999999999999999999999999999999999 99883 8999999866 45899999987621
Q ss_pred ---------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhH
Q 001505 685 ---------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (1065)
Q Consensus 685 ---------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t 755 (1065)
.++++..++++.+++.+.. .....+||||||||++||||+.++|+++||||||++||+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1123345555666654322 23445799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 756 GTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 756 ~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
.+.+. +.++.+. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+
T Consensus 149 ~~~l~-~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 149 QELLT-ELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 88775 4566554 4789999999999875 59999999 899999999999875
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-33 Score=337.18 Aligned_cols=198 Identities=21% Similarity=0.352 Sum_probs=162.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC--CCCcEEEECC-------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~--~~G~i~~v~g------- 659 (1065)
.++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|.++| ++|+| .++|
T Consensus 5 ~l~~~nl~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTFGG--------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEeCC--------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCC
Confidence 4899999999963 368999 999999999999999999999999999999986 89999 8876
Q ss_pred -------eEEEEecCCCCCC-CcHHHHHhcCccc------chH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 -------KKAYVPQSSWIQT-GTIRENILFGKDM------RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 -------~iayv~Q~pwif~-gTIreNIlfG~~~------d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++||+|+|.++. .|++|||.++... +.+ +.+++++..++ .........+|
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~L 144 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-----------DINPATPVGNL 144 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-----------CCCcccchhhC
Confidence 2899999998775 5999999987431 211 22233333332 22233455689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
|||||||++||||+..+|+++|||||||+||++....+. +.+..+. +++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 145 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLL-DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999999999999987765 4665553 4789999999999986 599999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++..
T Consensus 224 ~~~~~~~~~ 232 (506)
T PRK13549 224 TRPAAGMTE 232 (506)
T ss_pred ecccccCCH
Confidence 999888754
No 272
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-33 Score=343.87 Aligned_cols=206 Identities=22% Similarity=0.336 Sum_probs=166.9
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..++++|++++|+... ...++++| ||++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 11 ~~l~v~~l~~~y~~~~----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i-~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV-QCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEecCCC----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE-EECCEEeccccc
Confidence 4699999999996430 12468999 99999999999999999999999999999999999998 6543
Q ss_pred -------------------eEEEEecCC--CCC-CCcHHHHHhcCcc----cch----HHHHHHHHHhcchHHHHhhcCC
Q 001505 660 -------------------KKAYVPQSS--WIQ-TGTIRENILFGKD----MRQ----SFYEEVLEGCALNQDIEMWADG 709 (1065)
Q Consensus 660 -------------------~iayv~Q~p--wif-~gTIreNIlfG~~----~d~----~~y~~vl~ac~L~~di~~Lp~G 709 (1065)
+|+||+|+| -++ +.||+|||.++.. .+. ++..++++..+|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------- 158 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA------- 158 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------
Confidence 489999998 455 4699999987532 111 234445555554210
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-C-CcEEEEEcCCcchhh-cC
Q 001505 710 DLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AA 786 (1065)
Q Consensus 710 d~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~-~kTvIlVTH~l~~l~-~a 786 (1065)
.........+|||||||||+||||+..+|+++||||||++||+.+.+.+. +.++.+. + ++|+|+|||+++.+. .|
T Consensus 159 -~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~-~ll~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 159 -QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL-QLIKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred -hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 11234456789999999999999999999999999999999999987775 4676654 3 789999999999875 59
Q ss_pred CEEEEEeCCEEEEecCHHHHHh
Q 001505 787 DLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 787 D~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
|+|++|++|+|++.|+++++..
T Consensus 237 dri~vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 237 DRVLVMYQGEAVETGSVEQIFH 258 (623)
T ss_pred CEEEEeeCCeecccCCHHHhhc
Confidence 9999999999999999999875
No 273
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-33 Score=337.72 Aligned_cols=198 Identities=23% Similarity=0.314 Sum_probs=163.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|+.+|++|+| .++|
T Consensus 5 ~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFGP--------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcCC--------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHH
Confidence 4899999999963 358899 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCcc----------cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCC
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKD----------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGI 719 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~----------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~ 719 (1065)
.++||+|++-++. .|++||+.++.. .+ +++.+++++.++|.+ .......
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~ 144 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVA 144 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------Ccccchh
Confidence 3899999988775 599999987631 01 122333444444322 1233456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
+||||||||++||||+.++|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.+. .||+|++|++|++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF-LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999987765 4565543 4799999999999986 5999999999999
Q ss_pred EEecCHHHHHh
Q 001505 798 EQSGKYEDLIA 808 (1065)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1065)
++.|+++++..
T Consensus 224 ~~~g~~~~~~~ 234 (510)
T PRK09700 224 VCSGMVSDVSN 234 (510)
T ss_pred eeecchhhCCH
Confidence 99999988754
No 274
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.1e-33 Score=302.69 Aligned_cols=184 Identities=20% Similarity=0.334 Sum_probs=148.7
Q ss_pred ccccC-CeEe-----eCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-eEEEEecCCC-CCCCcHHHHHhcCc
Q 001505 612 IKLTD-KMKI-----MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSW-IQTGTIRENILFGK 683 (1065)
Q Consensus 612 ~~L~~-nl~i-----~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-~iayv~Q~pw-if~gTIreNIlfG~ 683 (1065)
..+.+ +|++ ++||+++|+||+|||||||+++|.|+++|.+|+| .++| +++|++|++. .++.|++||+.+..
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i-~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-EIELDTVSYKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE-EECCceEEEecccccCCCCCCHHHHHHHHh
Confidence 35556 5555 5899999999999999999999999999999999 9998 8999999987 47899999997543
Q ss_pred c-c--chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHH
Q 001505 684 D-M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1065)
Q Consensus 684 ~-~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if 760 (1065)
. . ++++.+++++.++|.+.+ ..+..+||||||||++||||+.++|++|||||||++||+++...+
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l- 154 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA- 154 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-
Confidence 2 1 123455667666664332 344568999999999999999999999999999999999997766
Q ss_pred HHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeCCEEE--EecCHHHHHh
Q 001505 761 KQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKDGKIE--QSGKYEDLIA 808 (1065)
Q Consensus 761 ~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~--e~Gt~~eL~~ 808 (1065)
.+.|+.+. .++|+|+|||+++.+. .||+|++|+++..+ ..++++++.+
T Consensus 155 ~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 155 SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 45676654 3799999999999987 49999999765443 5567777653
No 275
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.6e-33 Score=303.79 Aligned_cols=178 Identities=24% Similarity=0.326 Sum_probs=144.5
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC------------eEEEEe-cCCCCC-CCcH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------KKAYVP-QSSWIQ-TGTI 675 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------------~iayv~-Q~pwif-~gTI 675 (1065)
.++|+| |+++++||+++|+|++|||||||+++|.|.++|++|+| .++| .++|++ |++.++ +.|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV-RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 468889 99999999999999999999999999999999999999 8776 378997 556665 6799
Q ss_pred HHHHhcCcc---cchH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 001505 676 RENILFGKD---MRQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1065)
Q Consensus 676 reNIlfG~~---~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~ 748 (1065)
+||+.++.. .+++ +.+++++.+++.+.. ++ +..+||||||||++||||+.++|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999977532 2222 223344444443222 22 34579999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEec
Q 001505 749 SAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 749 SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~G 801 (1065)
++||+++.+.+. +.+..+.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIR-NFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHH-HHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999988764 56666533 6899999999998754 9999999999998765
No 276
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.5e-33 Score=335.27 Aligned_cols=198 Identities=23% Similarity=0.349 Sum_probs=162.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.|+++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 4 ~i~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFPG--------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeCC--------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHH
Confidence 4899999999963 368999 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCccc-------ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~~-------d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
.++|++|++-++. .|++|||.++... +. ++.+++++..++.+ .......+||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 143 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-----------SSDKLVGELS 143 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCC
Confidence 3899999987765 5999999986421 11 12333344433322 1233456899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEe
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQS 800 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~ 800 (1065)
||||||++||||+..+|+++||||||++||+.+...+. +.++.+. +++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999987764 4565543 4789999999999875 5999999999999999
Q ss_pred cCHHHHHh
Q 001505 801 GKYEDLIA 808 (1065)
Q Consensus 801 Gt~~eL~~ 808 (1065)
|+.+++..
T Consensus 223 ~~~~~~~~ 230 (501)
T PRK10762 223 REVADLTE 230 (501)
T ss_pred cCcCcCCH
Confidence 99887643
No 277
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.3e-33 Score=336.94 Aligned_cols=205 Identities=26% Similarity=0.380 Sum_probs=166.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEec
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~Q 666 (1065)
-++++|++++|+++ .++++| |++|++|++++|+||+|||||||+++|.|+++|++|+| .+++ .++||+|
T Consensus 4 ~i~~~nls~~~~~~-------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIKVGYLPQ 75 (552)
T ss_pred EEEEeeEEEecCCC-------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEec
Confidence 58999999999632 468999 99999999999999999999999999999999999999 8764 6999999
Q ss_pred CCCCCC-CcHHHHHhcCcc-------------------cc--------hHHHHHHHHHhcchH-------HHHhhcCCCC
Q 001505 667 SSWIQT-GTIRENILFGKD-------------------MR--------QSFYEEVLEGCALNQ-------DIEMWADGDL 711 (1065)
Q Consensus 667 ~pwif~-gTIreNIlfG~~-------------------~d--------~~~y~~vl~ac~L~~-------di~~Lp~Gd~ 711 (1065)
+|+++. .|++|||.++.. .+ .+++.++++.++..+ -++.+ |..
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~ 153 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP 153 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC
Confidence 999875 699999987631 01 123445555665432 12222 221
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEE
Q 001505 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVL 790 (1065)
Q Consensus 712 T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Il 790 (1065)
.......+||||||||++||||++++|+++||||||++||+++.+.+. +.++.. ++|+|+|||+++++.. ||+|+
T Consensus 154 -~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~-~~L~~~--~~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 154 -PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLE-QHLQEY--PGTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred -cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHhhcCeEE
Confidence 134566799999999999999999999999999999999999988764 456554 3699999999999865 89999
Q ss_pred EEeCCEEE-EecCHHHHHh
Q 001505 791 VMKDGKIE-QSGKYEDLIA 808 (1065)
Q Consensus 791 vl~~G~I~-e~Gt~~eL~~ 808 (1065)
+|++|+++ ..|+|++..+
T Consensus 230 ~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 230 ELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEECCEEEEecCCHHHHHH
Confidence 99999976 7899998765
No 278
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.1e-33 Score=300.20 Aligned_cols=190 Identities=26% Similarity=0.336 Sum_probs=148.1
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEec-CC
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQ-SS 668 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q-~p 668 (1065)
+.++|.+..|+. .++++| ||+|++||+++|+|++|||||||+++|.|+++|.+|+| .++|...+..+ ..
T Consensus 23 l~~~~~~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~ 93 (224)
T cd03220 23 LGILGRKGEVGE--------FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV-TVRGRVSSLLGLGG 93 (224)
T ss_pred hhhhhhhhhcCC--------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEchhhcccc
Confidence 444555555542 468999 99999999999999999999999999999999999999 99997655433 33
Q ss_pred CC-CCCcHHHHHhcCccc---ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001505 669 WI-QTGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1065)
Q Consensus 669 wi-f~gTIreNIlfG~~~---d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ad 740 (1065)
.+ .+.|++||+.++... +. ++.+++++..++.+. ......+||||||||++||||++++|+
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral~~~p~ 162 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-----------IDLPVKTYSSGMKARLAFAIATALEPD 162 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 33 467999999876421 11 123334444444322 223346799999999999999999999
Q ss_pred EEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 741 IlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 163 llllDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 163 ILLIDEVLAVGDAAFQEKCQ-RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999987765 4565543 4689999999999876 59999999999998865
No 279
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.3e-32 Score=338.16 Aligned_cols=189 Identities=28% Similarity=0.424 Sum_probs=159.3
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC--CCcEEEECCe---------EEEEecCCCCCC-CcHHH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI--SGAAIKVHGK---------KAYVPQSSWIQT-GTIRE 677 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~--~G~i~~v~g~---------iayv~Q~pwif~-gTIre 677 (1065)
+.+|+| |+++++||++||+||+|||||||+++|.|..+|. +|+| .++|. ++||+|++.++. .|++|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I-~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI-LANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE-EECCEECchhhccceEEECcccccCCcCCHHH
Confidence 568888 9999999999999999999999999999999875 8999 89883 899999999985 69999
Q ss_pred HHhcCc------ccchH----HHHHHHHHhcchHHHHhhcCCCCccccCC-CCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 001505 678 NILFGK------DMRQS----FYEEVLEGCALNQDIEMWADGDLSVVGER-GINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1065)
Q Consensus 678 NIlfG~------~~d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~-G~nLSGGQKQRIaLARAly~~adIlLLDD 746 (1065)
|+.|+. ..+++ +.+++++..+| ++..+|.||++ +..||||||||++||||+.++|+|++|||
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE 232 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC
Confidence 998853 12222 23334443333 34558889875 67899999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcch--hhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 747 PFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF--LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 747 p~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~--l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
|||+||+.++.++. +.++.+. +++|+|++||+++. ...+|+|++|++|++++.|+.+++.+
T Consensus 233 PtsgLD~~~~~~l~-~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 233 PTSGLDATAAYRLV-LTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCcCHHHHHHHH-HHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999988775 4666654 58999999999984 56799999999999999999999875
No 280
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.8e-33 Score=292.84 Aligned_cols=180 Identities=24% Similarity=0.280 Sum_probs=148.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .++++| |+++++||+++|+|++|||||||+++|.|+.+|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v-~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDYHD--------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI-LFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEeCC--------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeE-EECCCccccCHHHH
Confidence 678999999964 358999 99999999999999999999999999999999999998 8877
Q ss_pred --eEEEEecCCCCC-CCcHHHHHhcCccc--chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHH
Q 001505 660 --KKAYVPQSSWIQ-TGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA 734 (1065)
Q Consensus 660 --~iayv~Q~pwif-~gTIreNIlfG~~~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARA 734 (1065)
+++|++|++.++ +.|++||+.++... ++.+.+++++..++.+. ......+||||||||++||||
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~lara 141 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-----------IDYPCGLLSSGQKRQVALLRL 141 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-----------hhCChhhcCHHHHHHHHHHHH
Confidence 389999999885 68999999987421 23344455555444321 122334799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEE
Q 001505 735 VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLV 791 (1065)
Q Consensus 735 ly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilv 791 (1065)
++++|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+.+++.+||.-++
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTI-ITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHH-HHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999998766 45666543 47899999999999999997654
No 281
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-32 Score=294.35 Aligned_cols=185 Identities=22% Similarity=0.299 Sum_probs=151.2
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------- 660 (1065)
..++++|++++|++ .+.+++ |+++++||.++|+|++|||||||+++|.|+++|.+|+| .++|.
T Consensus 10 ~~l~~~~l~~~~~~--------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~i~~~~~ 80 (214)
T PRK13543 10 PLLAAHALAFSRNE--------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI-QIDGKTATRGDR 80 (214)
T ss_pred ceEEEeeEEEecCC--------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE-EECCEEccchhh
Confidence 45899999999964 358889 99999999999999999999999999999999999999 88872
Q ss_pred ---EEEEecCCCCCCC-cHHHHHhcCccc----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 661 ---KAYVPQSSWIQTG-TIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 661 ---iayv~Q~pwif~g-TIreNIlfG~~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
++|++|++.++.+ |++||+.++... .+++.++.++..+|.+ ....+..+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la 149 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-----------YEDTLVRQLSAGQKKRLALA 149 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-----------hccCChhhCCHHHHHHHHHH
Confidence 8999999988875 999999775432 1222333444333321 12344568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeC
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~ 794 (1065)
||++++|+++||||||++||+...+.+ .+.++.+. +++|+|++||+++.++ .||+|++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 150 RLWLSPAPLWLLDEPYANLDLEGITLV-NRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999997765 55665543 4789999999999875 5899999874
No 282
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2e-32 Score=300.16 Aligned_cols=182 Identities=27% Similarity=0.465 Sum_probs=151.6
Q ss_pred cccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------------EEEEecCCC-CCCCcHHH
Q 001505 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW-IQTGTIRE 677 (1065)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~-------------iayv~Q~pw-if~gTIre 677 (1065)
.|+| ||++++||+++|+|++|||||||+++|.|.+++ +|+| .++|. ++|++|++. .++.|++|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i-~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSI-QFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEE-EECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 5788 999999999999999999999999999999864 9999 88772 799999974 56789999
Q ss_pred HHhcCccc--c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc-------CCCEEEE
Q 001505 678 NILFGKDM--R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYIF 744 (1065)
Q Consensus 678 NIlfG~~~--d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~-------~adIlLL 744 (1065)
|+.++.+. + +++.+++++..+|.+. .......||||||||++||||+++ +|+++||
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDK-----------LGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 99987432 1 2344556666655432 234567899999999999999998 7799999
Q ss_pred eCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 745 DDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
||||++||+.+.+.+ .+.++.+. +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 158 DEPt~~LD~~~~~~l-~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 158 DEPMNSLDVAQQAAL-DRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCcccCCHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 999999999997766 45666654 478999999999976 5699999999999999999998864
No 283
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.9e-32 Score=290.94 Aligned_cols=181 Identities=26% Similarity=0.356 Sum_probs=152.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|+++.|++ .+.++| |++|++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 1 l~i~~l~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERDG--------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-LLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeCC--------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccccHHh
Confidence 468999999964 357889 99999999999999999999999999999999999999 8776
Q ss_pred --eEEEEecCCCCC-CCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 660 --KKAYVPQSSWIQ-TGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 660 --~iayv~Q~pwif-~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
.++|++|++.++ +.|++|||.+..+ .++++.+++++..++.+... ....+||||||||++||||+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral 140 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLL 140 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHH
Confidence 489999998875 6899999988643 35567778888887764322 23468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcch-hhcCCEEEEE
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF-LDAADLVLVM 792 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~-l~~aD~Ilvl 792 (1065)
+++|+++||||||++||+.+.+.+ .+.++... +++|+|++||+... ...+|+++++
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARF-AEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999998776 45666543 47899999998765 5668888876
No 284
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.1e-32 Score=333.53 Aligned_cols=197 Identities=24% Similarity=0.381 Sum_probs=163.0
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc--cCCCCcEEEEC---------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVH--------- 658 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~--~~~~G~i~~v~--------- 658 (1065)
|+++|++++|++ .++++| |+++++|++++|+||+|||||||+++|.|+. +|++|+| .++
T Consensus 1 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i-~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKFDG--------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEECC--------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE-EEeccccccccc
Confidence 468999999953 368999 9999999999999999999999999999996 7999998 664
Q ss_pred --------------C-----------------------eEEEEecC-CCCCC-CcHHHHHhcCcc---cc----hHHHHH
Q 001505 659 --------------G-----------------------KKAYVPQS-SWIQT-GTIRENILFGKD---MR----QSFYEE 692 (1065)
Q Consensus 659 --------------g-----------------------~iayv~Q~-pwif~-gTIreNIlfG~~---~d----~~~y~~ 692 (1065)
| .++||+|+ +.+++ .|++||+.|+.. ++ +++..+
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 27999997 56665 699999987532 11 234555
Q ss_pred HHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--C
Q 001505 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--Q 770 (1065)
Q Consensus 693 vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~ 770 (1065)
+++.++|.+.. .....+||||||||++||||+.++|+++||||||++||+++.+.+. +.++.+.+ +
T Consensus 152 ~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g 219 (520)
T TIGR03269 152 LIEMVQLSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASG 219 (520)
T ss_pred HHHHcCChhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 66666664332 2345689999999999999999999999999999999999988775 45666543 7
Q ss_pred cEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 771 KTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 771 kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
+|||+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 220 ~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 220 ISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred cEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 89999999999985 599999999999999999998876
No 285
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=6.3e-33 Score=289.39 Aligned_cols=176 Identities=30% Similarity=0.446 Sum_probs=140.0
Q ss_pred EEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCC
Q 001505 592 DIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWI 670 (1065)
Q Consensus 592 ~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwi 670 (1065)
+++|++++|++ .+.+++ |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|.-- .+ .
T Consensus 1 ~~~~l~~~~~~--------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v-~~~g~~~--~~---~ 66 (180)
T cd03214 1 EVENLSVGYGG--------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI-LLDGKDL--AS---L 66 (180)
T ss_pred CeeEEEEEECC--------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEC--Cc---C
Confidence 46899999963 358999 99999999999999999999999999999999999999 8887411 00 0
Q ss_pred CCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001505 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1065)
Q Consensus 671 f~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SA 750 (1065)
-...++..|.+-. ++++.+++.+++. .++.+||||||||++||||+.++|+++||||||++
T Consensus 67 ~~~~~~~~i~~~~--------q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 67 SPKELARKIAYVP--------QALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred CHHHHHHHHhHHH--------HHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 0011222332211 1667777765433 34678999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEEeCCEEEEec
Q 001505 751 VDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 751 LD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~G 801 (1065)
||+++.+.+ .+.++.+.+ ++|+|++||+++.+ ..||++++|++|++++.|
T Consensus 128 LD~~~~~~~-~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIEL-LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999997765 556766544 78999999999997 569999999999998764
No 286
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-33 Score=332.46 Aligned_cols=192 Identities=26% Similarity=0.345 Sum_probs=158.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 4 ~l~~~~l~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG--------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI-LIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC--------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE-EECCEECCCCCHH
Confidence 4899999999964 358999 99999999999999999999999999999999999999 8766
Q ss_pred -----eEEEEecCCCCCC-CcHHHHHhcCcc------cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 -----KKAYVPQSSWIQT-GTIRENILFGKD------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 -----~iayv~Q~pwif~-gTIreNIlfG~~------~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
.++||+|++.++. .|++||+.++.. .+. ++.+++++.++|.+ .......+|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 143 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSI 143 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCH
Confidence 3899999998876 599999998631 111 23344444444421 12334568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
|||||++||||+.++|+++||||||++||+++.+.+.+ .++.+. +++|+|+|||+++.+. .||+|++|++|+|++.+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999887754 565543 4789999999999875 59999999999998766
Q ss_pred C
Q 001505 802 K 802 (1065)
Q Consensus 802 t 802 (1065)
+
T Consensus 223 ~ 223 (501)
T PRK11288 223 D 223 (501)
T ss_pred C
Confidence 5
No 287
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=274.61 Aligned_cols=178 Identities=25% Similarity=0.395 Sum_probs=152.6
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------------eEEEEecCCCCCCCcH
Q 001505 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTI 675 (1065)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------------~iayv~Q~pwif~gTI 675 (1065)
+.+.|++ ||++.+||.++|+||||||||||++.+.-+.+|++|.+ ...| +|+||.|+|-||.+||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l-~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE-EEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 4678888 99999999999999999999999999999999999999 8877 4899999999999999
Q ss_pred HHHHhcCcc-----cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001505 676 RENILFGKD-----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1065)
Q Consensus 676 reNIlfG~~-----~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SA 750 (1065)
.||+.|.-. .|+......++..+| +++.+..+-.+||||+||||+|+|-|---|+|+||||||||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 999999632 344444443333333 34566777889999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcch-hhcCCEEEEEeCCEEEE
Q 001505 751 VDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 751 LD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~-l~~aD~Ilvl~~G~I~e 799 (1065)
||++..+.| ++.|..+. ++..++.|||..+. +.+||+++-+..|++-+
T Consensus 164 LD~~nkr~i-e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 164 LDESNKRNI-EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred cChhhHHHH-HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999998776 66676655 47899999999987 89999999999998743
No 288
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-33 Score=278.24 Aligned_cols=193 Identities=27% Similarity=0.455 Sum_probs=158.5
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------E
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------K 661 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------i 661 (1065)
..+++.+.+|+.. +.+.++| |++|.+||++++.|||||||||||+.+.|+++|..|+| .++|+ -
T Consensus 4 l~~~~~sl~y~g~------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i-~l~~r~i~gPgaer 76 (259)
T COG4525 4 LNVSHLSLSYEGK------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI-QLNGRRIEGPGAER 76 (259)
T ss_pred eehhheEEecCCc------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE-EECCEeccCCCccc
Confidence 4457788899875 3679999 99999999999999999999999999999999999999 99885 5
Q ss_pred EEEecCCCCC-CCcHHHHHhcCccc---ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHH
Q 001505 662 AYVPQSSWIQ-TGTIRENILFGKDM---RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1065)
Q Consensus 662 ayv~Q~pwif-~gTIreNIlfG~~~---d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLAR 733 (1065)
+.|.|++-++ -.|+.||+.||-.. ++ +.-.+.+...+|++. ++ ..--.||||||||+.|||
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~-------~~----~~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA-------EH----KYIWQLSGGMRQRVGIAR 145 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc-------cc----cceEeecchHHHHHHHHH
Confidence 8999997765 47999999999642 22 223344444454432 11 223589999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcch-hhcCCEEEEEe--CCEEEEecC
Q 001505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEF-LDAADLVLVMK--DGKIEQSGK 802 (1065)
Q Consensus 734 Aly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~-l~~aD~Ilvl~--~G~I~e~Gt 802 (1065)
|+..+|+.++||||++|||+-|.+++ |+.+..+. .+|-+++|||.++. +--|++++||+ .|+|++.=+
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~m-QelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQM-QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHH-HHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 99999999999999999999998886 66665543 48999999999986 67799999997 789998644
No 289
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=330.91 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=158.7
Q ss_pred EeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC------------
Q 001505 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------------ 659 (1065)
Q Consensus 593 ~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------------ 659 (1065)
++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|+++|.+|+| .++|
T Consensus 1 ~~nl~~~~~~--------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 1 MSNISKSFPG--------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI-LFQGKEIDFKSSKEAL 71 (491)
T ss_pred CCceEEEeCC--------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCEECCCCCHHHHH
Confidence 3688888863 368999 99999999999999999999999999999999999999 8877
Q ss_pred --eEEEEecCCCCC-CCcHHHHHhcCcc-c-----chH----HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 --KKAYVPQSSWIQ-TGTIRENILFGKD-M-----RQS----FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 --~iayv~Q~pwif-~gTIreNIlfG~~-~-----d~~----~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++|++|++.++ +.|++||+.++.. . +++ +.+++++.+ |.......+..+||||||
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~ 140 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL-----------DIDIDPRAKVATLSVSQM 140 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHc-----------CCCCCccCchhhCCHHHH
Confidence 289999999766 5699999998642 1 211 122222222 222233455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
||++||||+.++|+++||||||++||+.+.+.+.+ .++.+. +++|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 141 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (491)
T PRK10982 141 QMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLA 219 (491)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChh
Confidence 99999999999999999999999999999887754 565543 4789999999999875 59999999999999999988
Q ss_pred HHH
Q 001505 805 DLI 807 (1065)
Q Consensus 805 eL~ 807 (1065)
++.
T Consensus 220 ~~~ 222 (491)
T PRK10982 220 GLT 222 (491)
T ss_pred hCC
Confidence 764
No 290
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.7e-32 Score=329.68 Aligned_cols=197 Identities=22% Similarity=0.320 Sum_probs=165.4
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
-|+++|++++|++. .+|+| ||++++|++++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 3 ~l~~~~l~~~~~~~--------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSDT--------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER-QSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCCe--------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE-EECCcccccCCHH
Confidence 38899999999643 48999 99999999999999999999999999999999999998 7765
Q ss_pred ----eEEEEecCCCC---------CCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 ----KKAYVPQSSWI---------QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 ----~iayv~Q~pwi---------f~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.++|++|++-+ +..|++||+.++.. ++++.+++++..+|.+.. ......||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~ 141 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALL-----------DRRFKYLSTGET 141 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHH
Confidence 27899998753 25699999977632 345666777777665432 233468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
||++||||+..+|+++||||||++||+.+.+.+. +.+..+. +++|+|+|||+++.+. .||+|++|++|+++..|+.+
T Consensus 142 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 220 (490)
T PRK10938 142 RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLA-ELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220 (490)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999987765 4565543 3789999999999875 49999999999999999999
Q ss_pred HHHh
Q 001505 805 DLIA 808 (1065)
Q Consensus 805 eL~~ 808 (1065)
++.+
T Consensus 221 ~~~~ 224 (490)
T PRK10938 221 EILQ 224 (490)
T ss_pred HHhc
Confidence 8875
No 291
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.6e-32 Score=290.45 Aligned_cols=181 Identities=25% Similarity=0.300 Sum_probs=152.3
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|+. .+.++| |+++++||+++|+|++|||||||+++|.|+++|.+|+| .++|
T Consensus 2 l~~~~l~~~~~~--------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v-~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACERDE--------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV-LWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEECC--------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEEcccchHHh
Confidence 678999999964 358999 99999999999999999999999999999999999999 8877
Q ss_pred --eEEEEecCCCCCC-CcHHHHHhcCccc----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH
Q 001505 660 --KKAYVPQSSWIQT-GTIRENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA 732 (1065)
Q Consensus 660 --~iayv~Q~pwif~-gTIreNIlfG~~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA 732 (1065)
+++|++|++.++. .|++|||.++.+. ++++.+++++..+|.+..+ ....+||||||||++||
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la 141 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALA 141 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHH
Confidence 3899999988775 6999999876532 3456677888888764432 23468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcC-CEEEEE
Q 001505 733 RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAA-DLVLVM 792 (1065)
Q Consensus 733 RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~a-D~Ilvl 792 (1065)
||++++|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++++..+ ++++++
T Consensus 142 ~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 142 RLWLTRAPLWILDEPFTAIDKQGVARL-EALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998776 45666543 478999999999999654 567665
No 292
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.4e-32 Score=332.49 Aligned_cols=206 Identities=26% Similarity=0.377 Sum_probs=161.4
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC--CeEEEEe
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVP 665 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~--g~iayv~ 665 (1065)
..|+++|++++|+.+ .++++| ||+|++|++++|+||+|||||||+++|.|+++|++|+| .++ .+++||+
T Consensus 5 ~~l~i~~l~~~y~~~-------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i-~~~~~~~i~~v~ 76 (556)
T PRK11819 5 YIYTMNRVSKVVPPK-------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAPGIKVGYLP 76 (556)
T ss_pred EEEEEeeEEEEeCCC-------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEe
Confidence 358999999999622 468999 99999999999999999999999999999999999999 775 3799999
Q ss_pred cCCCCCC-CcHHHHHhcCcc-cc---------------h--------HHHHHHHHHh---c-------chHHHHhhcCCC
Q 001505 666 QSSWIQT-GTIRENILFGKD-MR---------------Q--------SFYEEVLEGC---A-------LNQDIEMWADGD 710 (1065)
Q Consensus 666 Q~pwif~-gTIreNIlfG~~-~d---------------~--------~~y~~vl~ac---~-------L~~di~~Lp~Gd 710 (1065)
|+|++++ -|++||+.++.. +. + .++.++.+.+ . +.+-++.+ |.
T Consensus 77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl 154 (556)
T PRK11819 77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RC 154 (556)
T ss_pred cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CC
Confidence 9999986 499999987631 00 0 0011111111 0 11111221 22
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEE
Q 001505 711 LSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLV 789 (1065)
Q Consensus 711 ~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~I 789 (1065)
. ....+..+||||||||++||||++++|+++|||||||+||+.+.+.+ .+.++.+ ++|+|+|||+++++.. ||+|
T Consensus 155 ~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l-~~~L~~~--~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 155 P-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWL-EQFLHDY--PGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred C-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHH-HHHHHhC--CCeEEEEeCCHHHHHhhcCeE
Confidence 1 12445568999999999999999999999999999999999998776 4566655 3699999999999865 8999
Q ss_pred EEEeCCEEE-EecCHHHHHh
Q 001505 790 LVMKDGKIE-QSGKYEDLIA 808 (1065)
Q Consensus 790 lvl~~G~I~-e~Gt~~eL~~ 808 (1065)
++|++|+++ ..|+|++..+
T Consensus 231 ~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EEEeCCEEEEecCCHHHHHH
Confidence 999999986 7899998764
No 293
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.4e-32 Score=331.20 Aligned_cols=197 Identities=21% Similarity=0.363 Sum_probs=159.4
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC--CCCcEEEECC--------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR--ISGAAIKVHG-------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~--~~G~i~~v~g-------- 659 (1065)
++++|++++|++ .++++| ||++++||+++|+||+|||||||+++|.|+++| .+|+| .++|
T Consensus 2 l~i~~l~~~~~~--------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i-~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTFGG--------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI-YWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEeCC--------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCCH
Confidence 689999999963 358999 999999999999999999999999999999986 79999 8876
Q ss_pred ------eEEEEecCCCCCC-CcHHHHHhcCccc-------ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 660 ------KKAYVPQSSWIQT-GTIRENILFGKDM-------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 660 ------~iayv~Q~pwif~-gTIreNIlfG~~~-------d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
.++||+|+|.++. .|++||+.++..+ +. ++.+++++.+++.+.. ++. ...+|
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~----~~~~L 142 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTR----PVGDY 142 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccC----chhhC
Confidence 3899999998775 5999999986431 11 1223333333332110 112 24579
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
|||||||++||||++++|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 143 SgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL-DIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 999999999999999999999999999999999988775 4565543 47899999999999864 99999999999999
Q ss_pred ecCHHHHH
Q 001505 800 SGKYEDLI 807 (1065)
Q Consensus 800 ~Gt~~eL~ 807 (1065)
.|+.++..
T Consensus 222 ~~~~~~~~ 229 (500)
T TIGR02633 222 TKDMSTMS 229 (500)
T ss_pred ecCcccCC
Confidence 99877653
No 294
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-32 Score=289.73 Aligned_cols=178 Identities=20% Similarity=0.285 Sum_probs=148.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe---------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------- 660 (1065)
++++|++++|+.. .+.+ |+++++||+++|+|++|||||||+++|.|+.+|++|+| .++|.
T Consensus 2 l~~~~l~~~~~~~---------~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNIEQK---------NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI-YYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEECCc---------EEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCcccChhhhhh
Confidence 6789999999532 3446 99999999999999999999999999999999999999 88872
Q ss_pred EEEEecCCCC-CCCcHHHHHhcCccc--chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001505 661 KAYVPQSSWI-QTGTIRENILFGKDM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1065)
Q Consensus 661 iayv~Q~pwi-f~gTIreNIlfG~~~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~ 737 (1065)
++|++|++.+ ++.|++|||.++... ++++.+++++.+++.+. ...++.+||||||||++||||+++
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDL-----------LDEKCYSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhh-----------hccChhhCCHHHHHHHHHHHHHhc
Confidence 7899998754 789999999886532 24456666777776543 234577999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhcCCEEE
Q 001505 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVL 790 (1065)
Q Consensus 738 ~adIlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~l~~aD~Il 790 (1065)
+|+++||||||++||+.+.+.+ .+.++.. .+++|+|++||+.+.++.||.|.
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLL-NNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 9999999999999999997665 4566533 35799999999999999999774
No 295
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-32 Score=291.32 Aligned_cols=182 Identities=25% Similarity=0.295 Sum_probs=152.4
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe---------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------- 660 (1065)
++++|+++.|++ ..+++| |++|++||+++|+|++|||||||+++|.|..+|++|+| .++|.
T Consensus 3 l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 73 (207)
T PRK13539 3 LEGEDLACVRGG--------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI-KLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEeEEEEECC--------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeCcchhhHh
Confidence 789999999964 357889 99999999999999999999999999999999999999 88873
Q ss_pred -EEEEecCCCC-CCCcHHHHHhcCcc---cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 661 -KAYVPQSSWI-QTGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 661 -iayv~Q~pwi-f~gTIreNIlfG~~---~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
++|++|++.+ ++.|++||+.+... .++++..++++..+|.++.. . ...+||||||||++||||+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~----------~~~~LS~G~~qrl~la~al 142 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-L----------PFGYLSAGQKRRVALARLL 142 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-C----------ChhhcCHHHHHHHHHHHHH
Confidence 6999988765 47899999987543 23445667777777754322 2 2247999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhcCCEEEEEeC
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~l~~aD~Ilvl~~ 794 (1065)
.++|+++||||||++||+.+.+.+. +.++.+ -+++|+|++||+++.++. |+++.++.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999987764 566554 357999999999999998 99988854
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-32 Score=280.89 Aligned_cols=159 Identities=28% Similarity=0.433 Sum_probs=127.9
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCC
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSW 669 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pw 669 (1065)
++++|++++|++ .+++++ |+++++||.++|+|++|||||||+++|.|+++|.+|+| .++|.- +..
T Consensus 1 l~~~~l~~~~~~--------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v-~~~g~~--~~~--- 66 (163)
T cd03216 1 LELRGITKRFGG--------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI-LVDGKE--VSF--- 66 (163)
T ss_pred CEEEEEEEEECC--------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEE--CCc---
Confidence 468999999964 358999 99999999999999999999999999999999999999 888741 000
Q ss_pred CCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001505 670 IQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1065)
Q Consensus 670 if~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~S 749 (1065)
.+.++. +. +..+ ..|+ ||||||||++||||++++|+++||||||+
T Consensus 67 ---~~~~~~-----------~~---~~i~------~~~q------------LS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 67 ---ASPRDA-----------RR---AGIA------MVYQ------------LSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred ---CCHHHH-----------Hh---cCeE------EEEe------------cCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 001100 00 0000 1111 99999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 750 AVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 750 ALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
+||+.+.+++. +.++.+. +++|+|++||+++.++. ||++++|++|++++
T Consensus 112 ~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 112 ALTPAEVERLF-KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999988764 5666653 47899999999998754 99999999999975
No 297
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=328.95 Aligned_cols=204 Identities=18% Similarity=0.284 Sum_probs=158.9
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEecC
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~Q~ 667 (1065)
|+++|++++|++ .++++| ||+|++||+++|+||+|||||||+++|.|+++|++|+| .++| +++|++|+
T Consensus 2 l~i~~ls~~~~~--------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~~~~i~~~~q~ 72 (530)
T PRK15064 2 LSTANITMQFGA--------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV-SLDPNERLGKLRQD 72 (530)
T ss_pred EEEEEEEEEeCC--------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEecc
Confidence 689999999963 368999 99999999999999999999999999999999999999 8876 69999999
Q ss_pred CCCCC-CcHHHHHhcCcc-c-c------------------hHHHHHHHH----------HhcchHHHHhhcCCCCccc-c
Q 001505 668 SWIQT-GTIRENILFGKD-M-R------------------QSFYEEVLE----------GCALNQDIEMWADGDLSVV-G 715 (1065)
Q Consensus 668 pwif~-gTIreNIlfG~~-~-d------------------~~~y~~vl~----------ac~L~~di~~Lp~Gd~T~I-G 715 (1065)
+-++. .|++||+.++.. + . ...+.+..+ .-...+-++.+ |..... .
T Consensus 73 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~ 150 (530)
T PRK15064 73 QFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEEQHY 150 (530)
T ss_pred CCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChhHhc
Confidence 87764 599999987631 0 0 000000000 00011112222 222111 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeC
Q 001505 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1065)
Q Consensus 716 e~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~ 794 (1065)
....+||||||||++||||+..+|+++||||||++||+++.+.+. +.+.. .++|+|+|||+++.+. .||+|++|++
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLE-DVLNE--RNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH-HHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 345789999999999999999999999999999999999987664 45543 4789999999999985 5999999999
Q ss_pred CEE-EEecCHHHHHh
Q 001505 795 GKI-EQSGKYEDLIA 808 (1065)
Q Consensus 795 G~I-~e~Gt~~eL~~ 808 (1065)
|++ +..|++++.++
T Consensus 228 g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 228 GELRVYPGNYDEYMT 242 (530)
T ss_pred CEEEEecCCHHHHHH
Confidence 999 47999998874
No 298
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.8e-32 Score=330.55 Aligned_cols=205 Identities=27% Similarity=0.407 Sum_probs=165.2
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG---- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g---- 659 (1065)
.++++|++++|+... ...++++| ||++++||+++|+||+|||||||+++|.|.++| ++|+| .++|
T Consensus 5 ~l~~~~l~~~~~~~~----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~~i~ 79 (529)
T PRK15134 5 LLAIENLSVAFRQQQ----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI-RFHGESLL 79 (529)
T ss_pred eEEEeceEEEecCCC----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE-EECCEecc
Confidence 489999999996420 12468999 999999999999999999999999999999986 79998 7765
Q ss_pred -------------eEEEEecCCC--CC-CCcHHHHHhcCc----ccc----hHHHHHHHHHhcchHHHHhhcCCCCcccc
Q 001505 660 -------------KKAYVPQSSW--IQ-TGTIRENILFGK----DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1065)
Q Consensus 660 -------------~iayv~Q~pw--if-~gTIreNIlfG~----~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IG 715 (1065)
+++|++|+|. ++ ..|++||+.++. ..+ +++.+++++.++|.+... ...
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~ 151 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLT 151 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHh
Confidence 3899999985 33 469999987431 111 234555666666642111 123
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEE
Q 001505 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVM 792 (1065)
Q Consensus 716 e~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl 792 (1065)
.+..+||||||||++||||++.+|+++|||||||+||+++.+.+. +.++.+. .++|+|+|||+++.+. .||+|++|
T Consensus 152 ~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL-QLLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 345689999999999999999999999999999999999987764 5666653 3799999999999875 59999999
Q ss_pred eCCEEEEecCHHHHHh
Q 001505 793 KDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 793 ~~G~I~e~Gt~~eL~~ 808 (1065)
++|+|++.|+.+++..
T Consensus 231 ~~G~i~~~g~~~~~~~ 246 (529)
T PRK15134 231 QNGRCVEQNRAATLFS 246 (529)
T ss_pred ECCEEEEeCCHHHHhh
Confidence 9999999999999875
No 299
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=315.66 Aligned_cols=219 Identities=26% Similarity=0.406 Sum_probs=175.4
Q ss_pred CccEEEeeeEEEeccccccc---CCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----
Q 001505 588 DVAIDIEAGEYAWDAREENF---KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~---~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---- 659 (1065)
+..++++|++..|.....-+ ......++| ||++++||.++|||+||||||||.++|+|..+|++|+| ..+|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i-~~~g~~~~ 356 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI-IFDGQDLD 356 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EEeCcccc
Confidence 34578999999998531111 122356777 99999999999999999999999999999999999998 7765
Q ss_pred -----------eEEEEecCCCC---CCCcHHHHHhcC----ccc----chHHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 -----------KKAYVPQSSWI---QTGTIRENILFG----KDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 -----------~iayv~Q~pwi---f~gTIreNIlfG----~~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
++-+|.|+|.= ...||+++|.-. ... -+++..+.++..+|.+++ ....
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~----------l~ry 426 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF----------LDRY 426 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH----------HhcC
Confidence 46799999973 468999999632 111 123455557778877541 2334
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKD 794 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~ 794 (1065)
-..|||||||||+||||+..+|+++++|||+||||+-+..++++ .++.+.+ |-|.|+|||+++++.+ ||+|.||++
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln-Ll~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~ 505 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN-LLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD 505 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH-HHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEEC
Confidence 56899999999999999999999999999999999999999875 4555433 6899999999999876 999999999
Q ss_pred CEEEEecCHHHHHhhcchHHHHHH
Q 001505 795 GKIEQSGKYEDLIADQNSELVRQM 818 (1065)
Q Consensus 795 G~I~e~Gt~~eL~~~~~~~~~~l~ 818 (1065)
|+|+|.|+.+++.+.....|.+.+
T Consensus 506 G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 506 GRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred CeEEEeCCHHHHhcCCCChHHHHH
Confidence 999999999999875566666554
No 300
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.8e-32 Score=330.56 Aligned_cols=206 Identities=24% Similarity=0.371 Sum_probs=163.9
Q ss_pred cEEEeeeEEEeccccccc---CCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC------
Q 001505 590 AIDIEAGEYAWDAREENF---KKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~---~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------ 659 (1065)
.++++|++++|+...... ....++++| |++|++||+++|+||+|||||||+++|.|.++ .+|+| .++|
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i-~~~g~~i~~~ 352 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEI-WFDGQPLHNL 352 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEE-EECCEEcccc
Confidence 589999999996310000 012468999 99999999999999999999999999999985 89999 8876
Q ss_pred ----------eEEEEecCC--CCC-CCcHHHHHhcCcc-----cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 ----------KKAYVPQSS--WIQ-TGTIRENILFGKD-----MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 ----------~iayv~Q~p--wif-~gTIreNIlfG~~-----~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
+++|++|+| .++ +.|++||+.++.. .+ +++.+++++..+|.++ .....
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE----------TRHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHH----------HHhcC
Confidence 279999998 355 4699999987521 11 1233445555555322 12334
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhh-cCCEEEEEeC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLD-AADLVLVMKD 794 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~-~aD~Ilvl~~ 794 (1065)
..+||||||||++||||+..+|+++||||||++||+++.+.++ +.++.+. .++|+|+|||+++.+. .||+|++|++
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL-ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 5689999999999999999999999999999999999988775 4666654 2789999999999875 5999999999
Q ss_pred CEEEEecCHHHHHh
Q 001505 795 GKIEQSGKYEDLIA 808 (1065)
Q Consensus 795 G~I~e~Gt~~eL~~ 808 (1065)
|+|++.|+.+++.+
T Consensus 502 G~i~~~~~~~~~~~ 515 (529)
T PRK15134 502 GEVVEQGDCERVFA 515 (529)
T ss_pred CEEEEEcCHHHHhc
Confidence 99999999999875
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-32 Score=330.58 Aligned_cols=209 Identities=19% Similarity=0.330 Sum_probs=165.4
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC-C-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH-G------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~-g------- 659 (1065)
..++++|++++|++.. ....++++| ||+|++||+++|+||+|||||||+++|.|..+|++|+| .++ |
T Consensus 278 ~~l~~~~l~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~~g~~~~~~~ 353 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD---RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV-NVRVGDEWVDMT 353 (520)
T ss_pred ceEEEeccEEEeccCC---CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EEecCCcccccc
Confidence 3599999999996310 012468999 99999999999999999999999999999999999999 774 3
Q ss_pred ------------eEEEEecCCCCCC-CcHHHHHhcCcc--cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 ------------KKAYVPQSSWIQT-GTIRENILFGKD--MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 ------------~iayv~Q~pwif~-gTIreNIlfG~~--~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
+++|++|++.++. .|++||+.++.. .+ +++.+++++.++|.+.- .+.........
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~ 427 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDE 427 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhh
Confidence 2899999988775 699999976321 11 12334455555553200 00012344568
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKI 797 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I 797 (1065)
||||||||++||||+..+|+++||||||++||+++.+.+. +.++.+.+ ++|+|+|||+++.+. .||+|++|++|++
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVT-HSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999987764 56666542 789999999999875 5999999999999
Q ss_pred EEecCHHHHHh
Q 001505 798 EQSGKYEDLIA 808 (1065)
Q Consensus 798 ~e~Gt~~eL~~ 808 (1065)
++.|+.+++.+
T Consensus 507 ~~~g~~~~~~~ 517 (520)
T TIGR03269 507 VKIGDPEEIVE 517 (520)
T ss_pred EEECCHHHHHh
Confidence 99999988764
No 302
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.1e-32 Score=293.06 Aligned_cols=184 Identities=19% Similarity=0.187 Sum_probs=148.9
Q ss_pred cccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEE-ECCeEEEEecCCCCCCC-cHHHHHhcCcc---cc
Q 001505 613 KLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVPQSSWIQTG-TIRENILFGKD---MR 686 (1065)
Q Consensus 613 ~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~-v~g~iayv~Q~pwif~g-TIreNIlfG~~---~d 686 (1065)
+++| |++|++||+++|+||+|||||||+++|+|+++|.+|+| . ++|....+.|++.++.. |++|||.+... .+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i-~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF-IGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE-EEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 4677 99999999999999999999999999999999999998 6 77765556778888875 99999987432 23
Q ss_pred hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhh
Q 001505 687 QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766 (1065)
Q Consensus 687 ~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ 766 (1065)
.++..+.+. +...++...++.+ ..||||||||++||||+.++|+++|||||++++|+++.+.+.+ .+..
T Consensus 81 ~~~~~~~~~------~~~~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~-~l~~ 149 (213)
T PRK15177 81 GDEFSHFCY------QLTQLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA-ALAC 149 (213)
T ss_pred HHHHHHHHH------HHhChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH-HHHH
Confidence 333322221 1223344444444 4599999999999999999999999999999999999877644 4544
Q ss_pred hcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 767 LLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 767 ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
.++++|+|++||+++.+. .||+|++|++|++++.|+-++..+
T Consensus 150 ~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 150 QLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 457789999999999985 699999999999999999888765
No 303
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4e-32 Score=293.28 Aligned_cols=189 Identities=21% Similarity=0.276 Sum_probs=148.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC--C--------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--G-------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~--g-------- 659 (1065)
++++|++++|+.... .+...++++| |++|++||.++|+|++|||||||+++|.|.++|.+|+| .++ |
T Consensus 2 l~~~~l~~~~~~~~~-~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ-GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI-LVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccC-CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EEecCCCccchhhc
Confidence 688999999964200 0011468999 99999999999999999999999999999999999998 775 3
Q ss_pred -----------eEEEEecCCCCCC-CcHHHHHhcCc---ccch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSSWIQT-GTIRENILFGK---DMRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~pwif~-gTIreNIlfG~---~~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|++|+|.++. .|++|||.++. ..+. ++.+++++..++.++. ....+.+
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~ 149 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPAT 149 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCccc
Confidence 3799999998775 59999997632 1221 2333344444443221 1234678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVM 792 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl 792 (1065)
||||||||++||||+.++|+++||||||++||+++.+.+. +.++.+. +++|+|+|||+.+.+. .||+|+.+
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV-ELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999987764 5666653 4789999999999885 69999876
No 304
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-32 Score=329.98 Aligned_cols=201 Identities=20% Similarity=0.333 Sum_probs=161.2
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-CCCCcEEEECC--------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVHG-------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-~~~G~i~~v~g-------- 659 (1065)
.++++|+++.|+.. ...++++| ||+|++||+++|+|++|||||||+++|.|.++ |.+|+| .++|
T Consensus 259 ~l~~~~l~~~~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i-~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPVN-----PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI-FIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCccccccc-----cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEE-EECCEECCCCCH
Confidence 58999999999532 12468999 99999999999999999999999999999998 599999 8776
Q ss_pred ------eEEEEecCC---CCC-CCcHHHHHhcCcc--c------ch----HHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 ------KKAYVPQSS---WIQ-TGTIRENILFGKD--M------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 ------~iayv~Q~p---wif-~gTIreNIlfG~~--~------d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
.++|++|+| .++ +.|+.||+.++.. + ++ ++.++.++.+++.. -.....
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~ 402 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT----------ASPELA 402 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC----------CCcccc
Confidence 289999996 354 5799999987521 1 11 22333444444321 012344
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G 795 (1065)
...||||||||++||||+..+|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.+. .||++++|++|
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G 481 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIY-KLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHH-HHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 5689999999999999999999999999999999999987764 4565543 4899999999999875 59999999999
Q ss_pred EEEEecCHHHHH
Q 001505 796 KIEQSGKYEDLI 807 (1065)
Q Consensus 796 ~I~e~Gt~~eL~ 807 (1065)
+|+..|+.+++.
T Consensus 482 ~i~~~~~~~~~~ 493 (506)
T PRK13549 482 KLKGDLINHNLT 493 (506)
T ss_pred EEEEEeccccCC
Confidence 999999887763
No 305
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.7e-32 Score=310.06 Aligned_cols=169 Identities=30% Similarity=0.409 Sum_probs=142.1
Q ss_pred EECCCCCChHHHHHHHhCcccCCCCcEEEECC-----------eEEEEecCCCCCC-CcHHHHHhcCccc---c----hH
Q 001505 628 VCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------KKAYVPQSSWIQT-GTIRENILFGKDM---R----QS 688 (1065)
Q Consensus 628 IvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-----------~iayv~Q~pwif~-gTIreNIlfG~~~---d----~~ 688 (1065)
|+||+|||||||+++|.|+++|++|+| .++| .++|++|++.+|. .|++|||.|+..+ + ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I-~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSI-MLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEE-EECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 589999999999999999999999999 8887 3899999999986 5999999987431 1 23
Q ss_pred HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc
Q 001505 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1065)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll 768 (1065)
+.+++++..+|.+..+ ....+||||||||++||||+.++|+++|||||||+||+++.+.+. +.++.+.
T Consensus 80 ~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~ 147 (325)
T TIGR01187 80 RVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ-LELKTIQ 147 (325)
T ss_pred HHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHHHH
Confidence 4555666666654333 334689999999999999999999999999999999999987764 5566654
Q ss_pred C--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHhh
Q 001505 769 S--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIAD 809 (1065)
Q Consensus 769 ~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~~ 809 (1065)
+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.++
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3 789999999999865 5999999999999999999999863
No 306
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.1e-31 Score=325.53 Aligned_cols=198 Identities=22% Similarity=0.349 Sum_probs=166.1
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEe
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~ 665 (1065)
..++++|++++|++ .++++| |++|++||+++|+||+|||||||+++|.|.++|++|+| .++| +++|++
T Consensus 318 ~~l~~~~l~~~~~~--------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~~~ 388 (530)
T PRK15064 318 NALEVENLTKGFDN--------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-KWSENANIGYYA 388 (530)
T ss_pred ceEEEEeeEEeeCC--------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCceEEEEEc
Confidence 46999999999964 358899 99999999999999999999999999999999999999 8887 799999
Q ss_pred cCCC--CC-CCcHHHHHhcCc--ccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001505 666 QSSW--IQ-TGTIRENILFGK--DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1065)
Q Consensus 666 Q~pw--if-~gTIreNIlfG~--~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ad 740 (1065)
|++. ++ +.|++||+.+.. ..++++.+++++..++..+. ......+||||||||++||||+.++|+
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD----------IKKSVKVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH----------hcCcccccCHHHHHHHHHHHHHhcCCC
Confidence 9974 43 479999996522 22344556677776663221 234457899999999999999999999
Q ss_pred EEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEE-EecCHHHHHh
Q 001505 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1065)
Q Consensus 741 IlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~-e~Gt~~eL~~ 808 (1065)
++||||||++||+.+.+.+. +.++.. +.|+|+|||+.+++.. ||+|++|++|+++ ..|+++++++
T Consensus 459 lllLDEPt~~LD~~~~~~l~-~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLN-MALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHH-HHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999999987765 456654 4699999999999765 9999999999998 8899998876
No 307
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.98 E-value=9.3e-32 Score=284.90 Aligned_cols=178 Identities=25% Similarity=0.283 Sum_probs=145.2
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
++++|++++|++ .+.++| |+++++||.++|+||+|||||||+++|.|+++|++|+| .++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRGE--------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV-RWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEECC--------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccchHHh
Confidence 468899999964 358899 99999999999999999999999999999999999999 8877
Q ss_pred --eEEEEecCCCCCC-CcHHHHHhcCccc---chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHH
Q 001505 660 --KKAYVPQSSWIQT-GTIRENILFGKDM---RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR 733 (1065)
Q Consensus 660 --~iayv~Q~pwif~-gTIreNIlfG~~~---d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLAR 733 (1065)
.++|++|++.+++ .|++||+.+..+. ++++..++++..++.+.++ ....+||||||||++|||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALAR 140 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHH
Confidence 3789999998875 7999999875432 2334666777777764432 234679999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhcCCEEE
Q 001505 734 AVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAADLVL 790 (1065)
Q Consensus 734 Aly~~adIlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~l~~aD~Il 790 (1065)
|++++|+++||||||++||+.+.+.+ .+.++.+ .+++|+|++||+...+.. |+++
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALL-AGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 99999999999999999999987655 5667654 357899999998754433 4444
No 308
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.98 E-value=1.7e-31 Score=310.44 Aligned_cols=213 Identities=26% Similarity=0.376 Sum_probs=171.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC----CCcEEEECC-----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI----SGAAIKVHG----- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~----~G~i~~v~g----- 659 (1065)
-++++|.+..|.... ....+++| ||++.+||.+||||.|||||||+..+|+|..++. +|+| ..+|
T Consensus 5 lL~V~nL~v~~~~~~----~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~dl~~ 79 (539)
T COG1123 5 LLEVENLTVEFATDG----GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRDLLG 79 (539)
T ss_pred eEEEeceEEEEecCC----cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcchhc
Confidence 589999999987650 12368899 9999999999999999999999999999999987 7998 7776
Q ss_pred ------------eEEEEecCCC-CCC--CcHHHHHh----cCccc----chHHHHHHHHHhcchHHHHhhcCCCCccccC
Q 001505 660 ------------KKAYVPQSSW-IQT--GTIRENIL----FGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGE 716 (1065)
Q Consensus 660 ------------~iayv~Q~pw-if~--gTIreNIl----fG~~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe 716 (1065)
.|||++|+|+ .+| -||.+-|. ...+. .+++-.+.++..+|.+.... ..
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~ 150 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DR 150 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------cc
Confidence 4899999987 455 36666653 22221 22344455666666544333 23
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhc-CCEEEEEe
Q 001505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~-aD~Ilvl~ 793 (1065)
--..||||||||+.||+|+..+|+++|+||||+|||+.|..+|.+ .|+.+. .|.++|+|||++..+.+ ||+|+||+
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~-llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD-LLKDLQRELGMAVLFITHDLGVVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH-HHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE
Confidence 356899999999999999999999999999999999999998864 676665 48899999999999755 99999999
Q ss_pred CCEEEEecCHHHHHhhcchHHHHH
Q 001505 794 DGKIEQSGKYEDLIADQNSELVRQ 817 (1065)
Q Consensus 794 ~G~I~e~Gt~~eL~~~~~~~~~~l 817 (1065)
+|+|+|.|+.++++++....|.+-
T Consensus 230 ~G~iVE~G~~~~i~~~p~hpYT~~ 253 (539)
T COG1123 230 KGEIVETGPTEEILSNPQHPYTRG 253 (539)
T ss_pred CCEEEEecCHHHHHhccCCcccHH
Confidence 999999999999998555556543
No 309
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.98 E-value=7.3e-32 Score=283.82 Aligned_cols=159 Identities=26% Similarity=0.394 Sum_probs=131.2
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------------eEEEEecCC--CCCC
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------------KKAYVPQSS--WIQT 672 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------------~iayv~Q~p--wif~ 672 (1065)
..++++ |++|++||.++|+||+|||||||+++|.|.++|++|+| .++| .++|++|+| .+++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV-LIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 468888 99999999999999999999999999999999999998 7766 379999998 5788
Q ss_pred CcHHHHHhcCcc---cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 001505 673 GTIRENILFGKD---MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFD 745 (1065)
Q Consensus 673 gTIreNIlfG~~---~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLD 745 (1065)
.|++|||.++.. .++ ++.+++++..+|.+... .+..+||||||||++||||++++|+++|||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999988532 222 23455555555543332 334689999999999999999999999999
Q ss_pred CCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcch
Q 001505 746 DPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF 782 (1065)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~ 782 (1065)
|||++||+.+.+.+. +.++.+. +++|+|++||+++.
T Consensus 153 EPt~~LD~~~~~~~~-~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQML-AILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeecccc
Confidence 999999999987764 5566553 47899999999864
No 310
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.1e-32 Score=271.53 Aligned_cols=198 Identities=22% Similarity=0.349 Sum_probs=164.4
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---------- 659 (1065)
+++.+++.+|++. ...++| +|+++.||.++|.|++|+||||+|+.|.+++.|++|+| .++|
T Consensus 2 l~v~~l~K~y~~~-------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v-~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYGSK-------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV-TIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhccCH-------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceE-EEeecccccChHHH
Confidence 5677888888643 446888 99999999999999999999999999999999999999 9887
Q ss_pred --eEEEEecCCCC-CCCcHHHHHhcCcc-cc------hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHH
Q 001505 660 --KKAYVPQSSWI-QTGTIRENILFGKD-MR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRI 729 (1065)
Q Consensus 660 --~iayv~Q~pwi-f~gTIreNIlfG~~-~d------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRI 729 (1065)
+|+..+-+--| -..|.||||.|-.. ++ +.+..++.+.-+|.+-+ ..|-.++|-|+||||
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-----------~rRv~~~S~G~kqkV 142 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-----------DRRVGEFSTGMKQKV 142 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-----------HHHHhhhchhhHHHH
Confidence 47777655444 46799999986432 21 34555566655554433 334557999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHH
Q 001505 730 QLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 730 aLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
+||||+.+||+||+||||+|+||..+.+ +|++.+..+.. +|+||+.||-++.++ -||+|+++.+|+++..|+.+++.
T Consensus 143 ~iARAlvh~P~i~vlDEP~sGLDi~~~r-~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 143 AIARALVHDPSILVLDEPTSGLDIRTRR-KFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred HHHHHHhcCCCeEEEcCCCCCccHHHHH-HHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 9999999999999999999999999865 66787876655 899999999999998 69999999999999999999988
Q ss_pred h
Q 001505 808 A 808 (1065)
Q Consensus 808 ~ 808 (1065)
+
T Consensus 222 ~ 222 (245)
T COG4555 222 A 222 (245)
T ss_pred H
Confidence 6
No 311
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1.8e-31 Score=268.07 Aligned_cols=140 Identities=31% Similarity=0.533 Sum_probs=127.4
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEecC
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~Q~ 667 (1065)
++++|+++.|++ .+.+++ |+++++||.++|+|++|||||||+++|.|+++|.+|+| .++| .++|++|
T Consensus 1 l~~~~l~~~~~~--------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~~~~~i~~~~~- 70 (144)
T cd03221 1 IELENLSKTYGG--------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGSTVKIGYFEQ- 70 (144)
T ss_pred CEEEEEEEEECC--------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCeEEEEEEcc-
Confidence 468899999964 358888 99999999999999999999999999999999999999 9988 5899999
Q ss_pred CCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 001505 668 SWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP 747 (1065)
Q Consensus 668 pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp 747 (1065)
||||||||++||||+.++|+++|||||
T Consensus 71 -----------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 71 -----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCE
Q 001505 748 FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1065)
Q Consensus 748 ~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~ 796 (1065)
|++||+.+...+ .+.++.+ ++|+|++||+++.++. ||++++|++|+
T Consensus 98 ~~~LD~~~~~~l-~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 98 TNHLDLESIEAL-EEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCCHHHHHHH-HHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999997766 4566655 5799999999999865 89999999985
No 312
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-31 Score=290.54 Aligned_cols=213 Identities=24% Similarity=0.393 Sum_probs=166.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC-----
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG----- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g----- 659 (1065)
++++|.+.+|.... .....++| ||++++||.+||||.|||||||+.++|+|++++ .+|+| ..+|
T Consensus 2 L~v~nL~v~f~~~~----g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i-~f~g~~l~~ 76 (316)
T COG0444 2 LEVKNLSVSFPTDA----GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKDLLS 76 (316)
T ss_pred ceEeeeEEEEecCC----ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE-EECCccccc
Confidence 57889888887641 12467888 999999999999999999999999999999983 56777 6666
Q ss_pred ------------eEEEEecCCCC-CC--CcHHHHH----hcCccc-----chHHHHHHHHHhcchH---HHHhhcCCCCc
Q 001505 660 ------------KKAYVPQSSWI-QT--GTIRENI----LFGKDM-----RQSFYEEVLEGCALNQ---DIEMWADGDLS 712 (1065)
Q Consensus 660 ------------~iayv~Q~pwi-f~--gTIreNI----lfG~~~-----d~~~y~~vl~ac~L~~---di~~Lp~Gd~T 712 (1065)
.|||++|+|-- +| -||.+-| ...... ..++-.+.++..++.+ -+...|
T Consensus 77 l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP----- 151 (316)
T COG0444 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP----- 151 (316)
T ss_pred CCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-----
Confidence 48999999852 33 3454444 322211 1234555666666653 234444
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchh-hcCCEE
Q 001505 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFL-DAADLV 789 (1065)
Q Consensus 713 ~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l-~~aD~I 789 (1065)
..||||||||+.||=|+..+|+++|-||||+|||..+..+|++ .++.+. .+.|+|+|||++..+ ..||+|
T Consensus 152 ------helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri 224 (316)
T COG0444 152 ------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRV 224 (316)
T ss_pred ------cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceE
Confidence 5899999999999999999999999999999999999999875 565554 489999999999986 559999
Q ss_pred EEEeCCEEEEecCHHHHHhhcchHHHH-HHHH
Q 001505 790 LVMKDGKIEQSGKYEDLIADQNSELVR-QMKA 820 (1065)
Q Consensus 790 lvl~~G~I~e~Gt~~eL~~~~~~~~~~-l~~~ 820 (1065)
.||..|+|+|.|+.+|+..+....|.+ |+++
T Consensus 225 ~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 225 AVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EEEECcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 999999999999999999855556655 4444
No 313
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.8e-32 Score=273.60 Aligned_cols=204 Identities=25% Similarity=0.397 Sum_probs=166.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.+..+|...+|.. .++.++ ||++++||.|++.||+|+||||....+.|+++|++|+| .++|
T Consensus 4 ~L~a~~l~K~y~k--------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i-~ld~~diT~lPm~ 74 (243)
T COG1137 4 TLVAENLAKSYKK--------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI-LLDDEDITKLPMH 74 (243)
T ss_pred EEEehhhhHhhCC--------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE-EECCcccccCChH
Confidence 3566788888864 468888 99999999999999999999999999999999999999 8887
Q ss_pred -----eEEEEecCCCCCCC-cHHHHHhcCcccch---HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 660 -----KKAYVPQSSWIQTG-TIRENILFGKDMRQ---SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 660 -----~iayv~Q~pwif~g-TIreNIlfG~~~d~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
.|+|.||+|-||.+ ||+|||.---++.+ ++-++-.+.-+|-+++ +....-...|..||||+|.|+-
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef-----~i~hlr~~~a~sLSGGERRR~E 149 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF-----HITHLRDSKAYSLSGGERRRVE 149 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh-----chHHHhcCcccccccchHHHHH
Confidence 38999999999965 99999975444322 2222222222333333 2233345679999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCc-chhhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 731 LARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQL-EFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l-~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
|||||..+|+.+||||||+++||-.-..| ++.|..+. +|--|++.-|++ +++.-||+.+++.+|+|..+|+++|+.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dI-q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDI-QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHH-HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999987776 77666553 356777778888 5789999999999999999999999987
No 314
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.2e-31 Score=269.18 Aligned_cols=201 Identities=28% Similarity=0.415 Sum_probs=165.4
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe---------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------- 660 (1065)
|+.+|++++-.. +..+.+ ++++++||.+||+||+|+||||||++|.||+.|.+|++ .++|.
T Consensus 2 i~a~nls~~~~G--------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v-~~~g~~l~~~~~~~ 72 (259)
T COG4559 2 IRAENLSYSLAG--------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV-TLNGVPLNSWPPEE 72 (259)
T ss_pred eeeeeeEEEeec--------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeE-eeCCcChhhCCHHH
Confidence 667888877654 457777 99999999999999999999999999999999999999 99883
Q ss_pred ----EEEEecCCCC-CCCcHHHHHhcCcc-c----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHH
Q 001505 661 ----KAYVPQSSWI-QTGTIRENILFGKD-M----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQ 730 (1065)
Q Consensus 661 ----iayv~Q~pwi-f~gTIreNIlfG~~-~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIa 730 (1065)
-|..||+.-+ |.=|++|-+.+|.- . +.++-+++.+.|-..-|+..|..-|- ..||||+|||++
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-------~~LSGGEqQRVq 145 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY-------RTLSGGEQQRVQ 145 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch-------hhcCchHHHHHH
Confidence 5899999776 99999999999962 2 22244444555544456666654443 479999999999
Q ss_pred HHHHHcc------CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecC
Q 001505 731 LARAVYS------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 731 LARAly~------~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt 802 (1065)
|||.|.+ ++++++|||||||||.+-..++++ ..+.+. ++..|+.|-|+++.. .+||+|++|.+||++..|+
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~-laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~ 224 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLR-LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHH-HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCC
Confidence 9999986 445899999999999998777765 344443 478999999999985 6799999999999999999
Q ss_pred HHHHHh
Q 001505 803 YEDLIA 808 (1065)
Q Consensus 803 ~~eL~~ 808 (1065)
++|.+.
T Consensus 225 p~~vlt 230 (259)
T COG4559 225 PQDVLT 230 (259)
T ss_pred HHHhcC
Confidence 999986
No 315
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.5e-31 Score=262.43 Aligned_cols=194 Identities=26% Similarity=0.381 Sum_probs=163.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.|++++++.+-+..+ .+-.+|++ ++.|++||.+|||||||||||||+..+.|.-+|++|+| .+.|
T Consensus 6 ii~~~~l~ktvg~~~----~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV-~l~G~~L~~ldEd 80 (228)
T COG4181 6 IIEVHHLSKTVGQGE----GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV-RLLGQPLHKLDED 80 (228)
T ss_pred eeehhhhhhhhcCCC----cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE-EEcCcchhhcCHH
Confidence 467777776655431 23568999 99999999999999999999999999999999999999 7766
Q ss_pred --------eEEEEecCCC-CCCCcHHHHHhcCccc-------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 --------KKAYVPQSSW-IQTGTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 --------~iayv~Q~pw-if~gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
++++|.|.-. |.|.|--||+....+. ..+.-++-+++.+|.+-+...| .+|||
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSG 149 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSG 149 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCc
Confidence 5999999976 5799999999764322 1234567788888877766666 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHh-hhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEE
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLM-GLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~-~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e 799 (1065)
|++||++||||+..+|+|++=||||-+||..|+++|.+-.+. .--++.|.|+|||+......|||++-|++|+|++
T Consensus 150 GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 150 GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999998664442 2335899999999999999999999999999985
No 316
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.8e-32 Score=282.52 Aligned_cols=179 Identities=26% Similarity=0.470 Sum_probs=158.4
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-----------------eEEEEecCCCCC-CCcHHHH
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-----------------KKAYVPQSSWIQ-TGTIREN 678 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-----------------~iayv~Q~pwif-~gTIreN 678 (1065)
|++.+.-..+|+-|+||||||||+++|.|...|++|.| .++| +||||.|++-|| +-|||-|
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I-~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRI-ELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEE-EECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 66777657999999999999999999999999999999 8888 489999999998 6799999
Q ss_pred HhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHH
Q 001505 679 ILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (1065)
Q Consensus 679 IlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~ 757 (1065)
+.||... +.+.+++++..-++.+-++..| .+||||+|||+||+|||..+|+++|+|||+|+||-...+
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhh
Confidence 9999865 4668889999888888888777 589999999999999999999999999999999998877
Q ss_pred HHHHHHHhhhcC--CcEEEEEcCCcch-hhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 758 HLFKQCLMGLLS--QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 758 ~if~~~i~~ll~--~kTvIlVTH~l~~-l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
.|+- .++.+.+ +--+++|||.++. +.-||+|++|+||++..+|.-+|..+
T Consensus 166 Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 166 EILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 7654 3444433 4679999999987 56799999999999999999999986
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=4.5e-31 Score=347.03 Aligned_cols=201 Identities=24% Similarity=0.363 Sum_probs=171.2
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
..|+++|+++.|+++ ++++++| |+++++||+++|+|++|||||||+++|.|..+|++|+| .++|
T Consensus 927 ~~L~I~nLsK~y~~~------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I-~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV-LVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCC------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE-EECCEECcchHH
Confidence 469999999999642 2568999 99999999999999999999999999999999999999 8887
Q ss_pred ----eEEEEecCCCCCC-CcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHH
Q 001505 660 ----KKAYVPQSSWIQT-GTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ 727 (1065)
Q Consensus 660 ----~iayv~Q~pwif~-gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQ 727 (1065)
.++||||++.+++ .|++|||.|+.. .+ +++.++.++..+|.+ ....+..+|||||||
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-----------~~~~~~~~LSGGqKQ 1068 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-----------KRNEEAQDLSGGMQR 1068 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHH
Confidence 3899999998885 599999987532 11 233455555555533 234556789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHH
Q 001505 728 RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 728 RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL 806 (1065)
|++||||+..+|+++|||||||+||+.+.+++. +.++.+.+++|+|++||+++.+. .||+|++|++|+++..|+.++|
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999988775 46666667899999999999986 5999999999999999999999
Q ss_pred Hh
Q 001505 807 IA 808 (1065)
Q Consensus 807 ~~ 808 (1065)
.+
T Consensus 1148 k~ 1149 (2272)
T TIGR01257 1148 KN 1149 (2272)
T ss_pred HH
Confidence 75
No 318
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=4.9e-31 Score=325.56 Aligned_cols=201 Identities=26% Similarity=0.373 Sum_probs=167.8
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|+++.|+... ...+.++| |+++++||+++|+|++|||||||+++|.|+++|++|++ .++|
T Consensus 4 ~l~~~nl~~~y~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSYPSGE----EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY-RVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEeCCCC----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEcCcCCHH
Confidence 489999999997430 12468999 99999999999999999999999999999999999998 8876
Q ss_pred --------eEEEEecCCCCCC-CcHHHHHhcCccc-------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 --------KKAYVPQSSWIQT-GTIRENILFGKDM-------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 --------~iayv~Q~pwif~-gTIreNIlfG~~~-------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
.++|++|++.+|. .|+.||+.++... ++++..+.++.+++.+ .+.....+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-----------~~~~~~~~LS~ 147 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-----------RVEYQPSQLSG 147 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhcCCcccCCH
Confidence 3799999999986 5999999864311 1223344555555443 33444568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecC
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt 802 (1065)
|||||++||||+.++|+++||||||++||+.+.+.+ .+.++.+. +++|+|++||+++.+..||++++|++|+++++|+
T Consensus 148 Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l-~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEV-MAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999999999999998766 45666654 4799999999999999999999999999999999
Q ss_pred HHHHH
Q 001505 803 YEDLI 807 (1065)
Q Consensus 803 ~~eL~ 807 (1065)
.+|..
T Consensus 227 ~~~~~ 231 (648)
T PRK10535 227 AQEKV 231 (648)
T ss_pred ccccc
Confidence 98875
No 319
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-31 Score=321.64 Aligned_cols=192 Identities=22% Similarity=0.388 Sum_probs=153.2
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|+++.| + .+++| ||+|++||+++|+||+|||||||+++|.|..+|++|+| .++|
T Consensus 265 ~l~~~~l~~~~--~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I-~~~g~~~~~~~~~ 333 (510)
T PRK09700 265 VFEVRNVTSRD--R--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI-RLNGKDISPRSPL 333 (510)
T ss_pred EEEEeCccccC--C--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE-EECCEECCCCCHH
Confidence 59999999864 2 26888 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCC---CCC-CCcHHHHHhcCccc------------ch----HHHHHHHHHhcchHHHHhhcCCCCccc
Q 001505 660 -----KKAYVPQSS---WIQ-TGTIRENILFGKDM------------RQ----SFYEEVLEGCALNQDIEMWADGDLSVV 714 (1065)
Q Consensus 660 -----~iayv~Q~p---wif-~gTIreNIlfG~~~------------d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~I 714 (1065)
.++||+|++ -++ +-|++||+.++... ++ ++.+++++..++.. -..
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~ 403 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC----------HSV 403 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC----------CCc
Confidence 279999984 354 56999999876321 11 11222233222210 113
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEE
Q 001505 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVM 792 (1065)
Q Consensus 715 Ge~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl 792 (1065)
......||||||||++||||+..+|+|+|||||||+||+.+.+.+. +.|+.+. +++|+|+|||+++.+ ..||+|++|
T Consensus 404 ~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY-KVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred cCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 3445679999999999999999999999999999999999987765 4665543 478999999999886 469999999
Q ss_pred eCCEEEEecCH
Q 001505 793 KDGKIEQSGKY 803 (1065)
Q Consensus 793 ~~G~I~e~Gt~ 803 (1065)
++|+|++.++.
T Consensus 483 ~~G~i~~~~~~ 493 (510)
T PRK09700 483 CEGRLTQILTN 493 (510)
T ss_pred ECCEEEEEecC
Confidence 99999988765
No 320
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=5.9e-31 Score=346.45 Aligned_cols=203 Identities=22% Similarity=0.372 Sum_probs=169.9
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc---CCCCcEEEECCe-----
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP---RISGAAIKVHGK----- 660 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~---~~~G~i~~v~g~----- 660 (1065)
.++++|++++++... ..+.+|+| |+++++||++||+||+|||||||+++|.|..+ +.+|+| .++|.
T Consensus 759 ~l~~~nl~~~~~~~~----~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I-~i~G~~~~~~ 833 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKK----EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR-LVNGRPLDSS 833 (1394)
T ss_pred eEEEEeeEEEecCCC----CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEECChh
Confidence 478999999996320 23578999 99999999999999999999999999999987 688999 99883
Q ss_pred ----EEEEecCCC-CCCCcHHHHHhcCcc------cch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 661 ----KAYVPQSSW-IQTGTIRENILFGKD------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 661 ----iayv~Q~pw-if~gTIreNIlfG~~------~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
++||+|++. +++.|||||+.|+.. .++ ++.+++++..+|. +-.++.||+.|.+|||||
T Consensus 834 ~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGq 906 (1394)
T TIGR00956 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQ 906 (1394)
T ss_pred hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHH
Confidence 799999864 677899999998531 221 2345666666654 235889999999999999
Q ss_pred HHHHHHHHHHccCCC-EEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcch--hhcCCEEEEEeCC-EEEEe
Q 001505 726 KQRIQLARAVYSNSD-VYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF--LDAADLVLVMKDG-KIEQS 800 (1065)
Q Consensus 726 KQRIaLARAly~~ad-IlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~--l~~aD~Ilvl~~G-~I~e~ 800 (1065)
|||++||||+.++|+ |++||||||+||++++.++. +.++.+ .+++|+|++|||++. ...+|+|++|++| ++++.
T Consensus 907 rqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~-~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC-KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF 985 (1394)
T ss_pred hhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence 999999999999997 99999999999999988775 566665 458999999999986 3679999999987 99999
Q ss_pred cCHHH
Q 001505 801 GKYED 805 (1065)
Q Consensus 801 Gt~~e 805 (1065)
|+.++
T Consensus 986 G~~~~ 990 (1394)
T TIGR00956 986 GDLGE 990 (1394)
T ss_pred CCccc
Confidence 99754
No 321
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=2.8e-31 Score=319.87 Aligned_cols=199 Identities=20% Similarity=0.297 Sum_probs=156.7
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-CCCcEEEECC--------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG-------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-~~G~i~~v~g-------- 659 (1065)
.++++|++++|+.+ ....+++| ||+|++||+++|+||+|||||||+++|.|.++| .+|+| .++|
T Consensus 257 ~l~~~~l~~~~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i-~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVIN-----PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNV-FINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCccccccc-----ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEE-EECCEECCCCCH
Confidence 58999999988432 12458999 999999999999999999999999999999985 89999 8876
Q ss_pred ------eEEEEecCC---CC-CCCcHHHHHhcCcc--------cch----HHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 ------KKAYVPQSS---WI-QTGTIRENILFGKD--------MRQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 ------~iayv~Q~p---wi-f~gTIreNIlfG~~--------~d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
+++||+|++ .+ .+.|++||+.++.. .++ ++.+++++.+++.++ .....
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 400 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA----------SPFLP 400 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----------CccCc
Confidence 279999996 34 45799999988531 111 123334444433210 12334
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G 795 (1065)
...||||||||++||||+..+|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.+. .||+|++|++|
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIY-KLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 4679999999999999999999999999999999999987765 4565543 4789999999999875 59999999999
Q ss_pred EEEEecCHHH
Q 001505 796 KIEQSGKYED 805 (1065)
Q Consensus 796 ~I~e~Gt~~e 805 (1065)
+|+..++-++
T Consensus 480 ~i~~~~~~~~ 489 (500)
T TIGR02633 480 KLKGDFVNHA 489 (500)
T ss_pred EEEEEEcccc
Confidence 9998775443
No 322
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-31 Score=317.67 Aligned_cols=195 Identities=20% Similarity=0.340 Sum_probs=156.5
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|+++ ..+++| |++|++||+++|+||+|||||||+++|+|+.+|.+|+| .++|
T Consensus 257 ~l~~~~~~~------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i-~~~g~~~~~~~~~ 323 (501)
T PRK11288 257 RLRLDGLKG------------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV-YLDGKPIDIRSPR 323 (501)
T ss_pred EEEEecccc------------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE-EECCEECCCCCHH
Confidence 578888863 137888 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCC----CCCCCcHHHHHhcCccc---------ch----HHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 -----KKAYVPQSS----WIQTGTIRENILFGKDM---------RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 -----~iayv~Q~p----wif~gTIreNIlfG~~~---------d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
.++|++|+| ...+.|+.||+.++... ++ ++.++.++.+++.+ ......
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~ 393 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT----------PSREQL 393 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc----------CCccCc
Confidence 278999997 34468999999876311 11 12233333333311 112344
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDG 795 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G 795 (1065)
..+||||||||++||||+..+|+++||||||++||..+.+.+. ++|+.+. .++|+|+|||+++++ +.||+|++|++|
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY-NVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECC
Confidence 5689999999999999999999999999999999999987764 5676654 378999999999987 559999999999
Q ss_pred EEEEecCHHHHHh
Q 001505 796 KIEQSGKYEDLIA 808 (1065)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1065)
++++.|+.+|...
T Consensus 473 ~i~~~~~~~~~~~ 485 (501)
T PRK11288 473 RIAGELAREQATE 485 (501)
T ss_pred EEEEEEccccCCH
Confidence 9999999887653
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=2.2e-30 Score=315.27 Aligned_cols=198 Identities=27% Similarity=0.387 Sum_probs=160.5
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEe
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~ 665 (1065)
..++++|++++|++ .++++| |++|++|++++|+||+|||||||+++|.|+.+|.+|+| .+++ +++|++
T Consensus 321 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~i~~v~ 391 (552)
T TIGR03719 321 KVIEAENLSKGFGD--------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI-KIGETVKLAYVD 391 (552)
T ss_pred eEEEEeeEEEEECC--------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EECCceEEEEEe
Confidence 46999999999964 358999 99999999999999999999999999999999999999 8865 599999
Q ss_pred cCC-CCC-CCcHHHHHhcCccc---c--hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001505 666 QSS-WIQ-TGTIRENILFGKDM---R--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1065)
Q Consensus 666 Q~p-wif-~gTIreNIlfG~~~---d--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ 738 (1065)
|++ .++ +.|++||+.++... + +.+.+++++..++.++ .......+||||||||++||||+..+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhC
Confidence 996 344 56999999986431 1 2223344444444321 12334568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeC-CEEE-EecCHHHHHh
Q 001505 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD-GKIE-QSGKYEDLIA 808 (1065)
Q Consensus 739 adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~-G~I~-e~Gt~~eL~~ 808 (1065)
|+++||||||++||+.+.+.+. +.|+.+ . .|+|+|||+++++.. ||+|++|++ |++. ..|++++..+
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~-~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALE-EALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999987764 566655 3 499999999999865 999999997 5876 5688887765
No 324
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.5e-30 Score=342.12 Aligned_cols=202 Identities=18% Similarity=0.301 Sum_probs=170.2
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------- 659 (1065)
+..|+++|+++.|++. ...+++| |++|++||+++|+|++|||||||+++|.|+.+|++|+| .++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I-~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA-TVAGKSILTNI 2007 (2272)
T ss_pred CceEEEEEEEEEECCC------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EECCEECcchH
Confidence 3469999999999742 2568999 99999999999999999999999999999999999999 8887
Q ss_pred -----eEEEEecCCCCC-CCcHHHHHhcCcc---cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 660 -----KKAYVPQSSWIQ-TGTIRENILFGKD---MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 660 -----~iayv~Q~pwif-~gTIreNIlfG~~---~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
.+|||||++-++ +.|++||+.+... .. +++.+++++.++|.+.. ..+...||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-----------dk~~~~LSGGqK 2076 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-----------DRLAGTYSGGNK 2076 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHH
Confidence 389999998877 4699999976321 11 22344566777765432 233467999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYE 804 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~ 804 (1065)
||++||||+..+|+|++||||||+||+.+.+.+. +.|+.+. +|+|+|++||+++.+. .||+|++|++|+++..|+.+
T Consensus 2077 qRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLW-NTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999988775 4666653 5899999999999886 49999999999999999999
Q ss_pred HHHh
Q 001505 805 DLIA 808 (1065)
Q Consensus 805 eL~~ 808 (1065)
+|.+
T Consensus 2156 ~Lk~ 2159 (2272)
T TIGR01257 2156 HLKS 2159 (2272)
T ss_pred HHHH
Confidence 9976
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2.7e-30 Score=314.64 Aligned_cols=198 Identities=25% Similarity=0.379 Sum_probs=160.7
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEe
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~ 665 (1065)
..++++|++++|++ .++++| ||+|++||+++|+||+|||||||+++|.|..+|++|+| .+++ ++||++
T Consensus 323 ~~l~~~~l~~~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~~i~~v~ 393 (556)
T PRK11819 323 KVIEAENLSKSFGD--------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI-KIGETVKLAYVD 393 (556)
T ss_pred eEEEEEeEEEEECC--------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCceEEEEEe
Confidence 46999999999964 358999 99999999999999999999999999999999999999 8865 599999
Q ss_pred cCC-CCC-CCcHHHHHhcCccc-----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001505 666 QSS-WIQ-TGTIRENILFGKDM-----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1065)
Q Consensus 666 Q~p-wif-~gTIreNIlfG~~~-----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ 738 (1065)
|++ .++ +.|++||+.++... ++++.+++++..++.++ .......+||||||||++||||+.++
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 997 454 46999999876421 12223334444444221 12334568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeC-CEEE-EecCHHHHHh
Q 001505 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKD-GKIE-QSGKYEDLIA 808 (1065)
Q Consensus 739 adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~-G~I~-e~Gt~~eL~~ 808 (1065)
|+++||||||++||+.+.+.+. +.++.+ + .|+|+|||+++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 464 p~lllLDEPt~~LD~~~~~~l~-~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 464 GNVLLLDEPTNDLDVETLRALE-EALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCEEEEcCCCCCCCHHHHHHHH-HHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 9999999999999999987764 566654 3 499999999998764 999999986 8886 4799988876
No 326
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.5e-31 Score=260.02 Aligned_cols=199 Identities=27% Similarity=0.418 Sum_probs=164.2
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
.+++++|....|.. ..+|++ +++.++|+.+.|+|.|||||||+|+||-=+-.|.+|.| .++|
T Consensus 5 ~~l~v~dlHK~~G~--------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I-~v~geei~~k~~ 75 (256)
T COG4598 5 NALEVEDLHKRYGE--------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI-RVNGEEIRLKRD 75 (256)
T ss_pred cceehhHHHhhccc--------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE-EECCeEEEeeeC
Confidence 46888888888864 368999 99999999999999999999999999999889999999 8877
Q ss_pred ------------------eEEEEecCCCCC-CCcHHHHHh------cCcccch--HHHHHHHHHhcchHHHHhhcCCCCc
Q 001505 660 ------------------KKAYVPQSSWIQ-TGTIRENIL------FGKDMRQ--SFYEEVLEGCALNQDIEMWADGDLS 712 (1065)
Q Consensus 660 ------------------~iayv~Q~pwif-~gTIreNIl------fG~~~d~--~~y~~vl~ac~L~~di~~Lp~Gd~T 712 (1065)
+.+.|.|+--|. ..|+-||+. .|.+-++ ++-+.-+...++.+--+.-
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y------ 149 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY------ 149 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC------
Confidence 258999987775 579999986 3433222 3344455556665443333
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEE
Q 001505 713 VVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVL 790 (1065)
Q Consensus 713 ~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Il 790 (1065)
...|||||+||++|||||.-+|+++|+|||||||||+---.+. +.++.+. .|||.++|||.+.|.++ +.+|+
T Consensus 150 -----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVL-kv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~ 223 (256)
T COG4598 150 -----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVI 223 (256)
T ss_pred -----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHH-HHHHHHHHhCCeEEEEeeehhHHHhhhhheE
Confidence 4689999999999999999999999999999999998655554 3455543 59999999999999977 68999
Q ss_pred EEeCCEEEEecCHHHHHh
Q 001505 791 VMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 791 vl~~G~I~e~Gt~~eL~~ 808 (1065)
.+.+|.|.|+|+++++..
T Consensus 224 fLh~G~iEE~G~P~qvf~ 241 (256)
T COG4598 224 FLHQGKIEEEGPPEQVFG 241 (256)
T ss_pred EeecceecccCChHHHhc
Confidence 999999999999999986
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-30 Score=317.16 Aligned_cols=199 Identities=24% Similarity=0.439 Sum_probs=162.6
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEE
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv 664 (1065)
+..|+++|++++|++ .++++| |++|++|++++|+||+|||||||+++|+|+++|++|+| .+++ +++|+
T Consensus 310 ~~~l~~~~l~~~y~~--------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~igy~ 380 (638)
T PRK10636 310 NPLLKMEKVSAGYGD--------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-GLAKGIKLGYF 380 (638)
T ss_pred CceEEEEeeEEEeCC--------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE-EECCCEEEEEe
Confidence 346999999999964 368999 99999999999999999999999999999999999999 8864 69999
Q ss_pred ecCC--CCC-CCcHHHHHhc-CcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001505 665 PQSS--WIQ-TGTIRENILF-GKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1065)
Q Consensus 665 ~Q~p--wif-~gTIreNIlf-G~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ad 740 (1065)
+|++ .+. +.|+.+|+.. .....+++.+++++..++..+. .......||||||||++||||++++|+
T Consensus 381 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 381 AQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDK----------VTEETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred cCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9975 343 3588888742 2222344556666666654321 122346899999999999999999999
Q ss_pred EEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEE-EecCHHHHHh
Q 001505 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1065)
Q Consensus 741 IlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~-e~Gt~~eL~~ 808 (1065)
++||||||++||+.+.+.+ .+.+..+ +.|+|+|||+.+++.. ||+|++|++|+|+ ..|+|++..+
T Consensus 451 lLlLDEPt~~LD~~~~~~l-~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 451 LLLLDEPTNHLDLDMRQAL-TEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEcCCCCCCCHHHHHHH-HHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999997765 5667665 3599999999999864 9999999999997 7899998754
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.7e-30 Score=268.88 Aligned_cols=145 Identities=24% Similarity=0.366 Sum_probs=126.7
Q ss_pred eeeEEEecccccccCCCcccccCCeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-eEEEEecCCCCCC
Q 001505 594 EAGEYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-KKAYVPQSSWIQT 672 (1065)
Q Consensus 594 ~n~sfsw~~~~~~~~~~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-~iayv~Q~pwif~ 672 (1065)
.|++++|++ ..++++++++++||+++|+||+|||||||+++|.|.++|++|+| .++| .++|++|++.
T Consensus 4 ~~l~~~~~~--------~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGV--------FFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND-EWDGITPVYKPQYID--- 71 (177)
T ss_pred CCeEEEECC--------EEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE-EECCEEEEEEcccCC---
Confidence 467777753 35676788999999999999999999999999999999999999 9998 5899999753
Q ss_pred CcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001505 673 GTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1065)
Q Consensus 673 gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD 752 (1065)
||||||||++||||+.++|+++||||||++||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhhc-C-CcEEEEEcCCcchhh-cCCEEEEEeCCEEEE
Q 001505 753 AHTGTHLFKQCLMGLL-S-QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQ 799 (1065)
Q Consensus 753 ~~t~~~if~~~i~~ll-~-~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e 799 (1065)
+++.+.+. +.++.+. + ++|+|+|||+++.+. .||+|++|+++-.+.
T Consensus 104 ~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~ 152 (177)
T cd03222 104 IEQRLNAA-RAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVY 152 (177)
T ss_pred HHHHHHHH-HHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccc
Confidence 99987664 4565554 3 389999999999987 599999999876653
No 329
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=3.5e-30 Score=318.30 Aligned_cols=198 Identities=22% Similarity=0.352 Sum_probs=162.8
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEe
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~ 665 (1065)
..++++|++++|++. .++++| ||+|++|++++|+||+|||||||+++|.|+++|.+|+| .+++ +++|++
T Consensus 507 ~~L~~~~ls~~y~~~-------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I-~~~~~~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGG-------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-FRSAKVRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCC-------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE-EECCceeEEEEe
Confidence 469999999999643 358999 99999999999999999999999999999999999999 8776 599999
Q ss_pred cCCCCCCCcHHHHHhcC-----cccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001505 666 QSSWIQTGTIRENILFG-----KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1065)
Q Consensus 666 Q~pwif~gTIreNIlfG-----~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ad 740 (1065)
|++. ...++.+|+... ...++++++++++..++.++.. ......||||||||++||||++++|+
T Consensus 579 Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~ 647 (718)
T PLN03073 579 QHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPH 647 (718)
T ss_pred cccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCC
Confidence 9873 344667775321 1234567778888888764432 23356899999999999999999999
Q ss_pred EEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEE-EecCHHHHHh
Q 001505 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1065)
Q Consensus 741 IlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~-e~Gt~~eL~~ 808 (1065)
++||||||++||+.+.+.+.+ .+... +.|+|+|||+++++.. ||+|++|++|+++ ..|++++..+
T Consensus 648 lLLLDEPT~~LD~~s~~~l~~-~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 648 ILLLDEPSNHLDLDAVEALIQ-GLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred EEEEcCCCCCCCHHHHHHHHH-HHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999999999877644 45443 3599999999999865 9999999999998 6788877643
No 330
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=8.4e-31 Score=315.62 Aligned_cols=193 Identities=20% Similarity=0.377 Sum_probs=155.4
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++. +.++| ||+|++||+++|+||+|||||||+++|.|.++|++|+| .++|
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I-~~~g~~i~~~~~~ 322 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV-TLDGHEVVTRSPQ 322 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHH
Confidence 578888762 25888 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCC---CC-CCCcHHHHHhcCcc---------cc----hHHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 660 -----KKAYVPQSS---WI-QTGTIRENILFGKD---------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 660 -----~iayv~Q~p---wi-f~gTIreNIlfG~~---------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
.++||+|+| .+ .+.|++||+.++.. .+ +++.+++++.+++. .-.....
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~ 392 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQA 392 (501)
T ss_pred HHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCc
Confidence 289999997 34 45799999987521 11 11223333333331 0123455
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDG 795 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G 795 (1065)
...||||||||++||||+..+|+++||||||++||+.+.+.+. +.++.+. +++|+|++||+++.+. .||+|++|++|
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIY-QLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 6789999999999999999999999999999999999987764 5676654 4789999999999875 59999999999
Q ss_pred EEEEecCHHHHH
Q 001505 796 KIEQSGKYEDLI 807 (1065)
Q Consensus 796 ~I~e~Gt~~eL~ 807 (1065)
+|+..|+.+++.
T Consensus 472 ~i~~~~~~~~~~ 483 (501)
T PRK10762 472 RISGEFTREQAT 483 (501)
T ss_pred EEEEEeccccCC
Confidence 999999887653
No 331
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.6e-30 Score=285.43 Aligned_cols=186 Identities=23% Similarity=0.323 Sum_probs=147.2
Q ss_pred eeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEE-----------ECC--
Q 001505 594 EAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHG-- 659 (1065)
Q Consensus 594 ~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~-----------v~g-- 659 (1065)
.|++++|+.. .+.++| + .+++||+++|+||+|||||||+++|.|.++|++|+| . ++|
T Consensus 4 ~~~~~~y~~~-------~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I-~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 4 DEPVHRYGPN-------SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF-DDPPDWDEILDEFRGSE 74 (255)
T ss_pred cCcceeecCc-------chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE-eeccccchhhhhccCch
Confidence 3678888643 357888 8 499999999999999999999999999999999998 5 444
Q ss_pred -------------eEEEEecCCCCCCCcHHHHHhcCcc--cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHH
Q 001505 660 -------------KKAYVPQSSWIQTGTIRENILFGKD--MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGG 724 (1065)
Q Consensus 660 -------------~iayv~Q~pwif~gTIreNIlfG~~--~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGG 724 (1065)
.++|++|.+.+++.++.+||.+.-. .++++..++++.+++.+ ....+..+||||
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G 143 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH-----------VLDRNIDQLSGG 143 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 2578888887777666666654311 12345666676666543 344566799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEec
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~G 801 (1065)
||||++||||++++|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++.+. .||+|++|+ |++.+.|
T Consensus 144 ~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~-~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAA-RLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999987664 5566554 3799999999999987 499999994 6666544
No 332
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.4e-30 Score=276.28 Aligned_cols=197 Identities=27% Similarity=0.405 Sum_probs=160.2
Q ss_pred cEEEeeeEEEecccccccCCC--cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeE-EEEe
Q 001505 590 AIDIEAGEYAWDAREENFKKP--TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK-AYVP 665 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~--~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~i-ayv~ 665 (1065)
-++++|++..|+.... +... ...++| ||+|++||.+++||+|||||||+-++|+|+++|++|+| ..+|+- .-.+
T Consensus 4 ll~v~~l~k~f~~~~~-~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i-~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI-LFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccc-cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceE-EEcCcchhhcc
Confidence 4788999998876411 1111 246677 99999999999999999999999999999999999999 888753 1111
Q ss_pred cCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHH-HHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001505 666 QSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD-IEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1065)
Q Consensus 666 Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~d-i~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLL 744 (1065)
+.-..+++.+.++..+|.++ +...| ..|||||||||+||||+.-+|++++.
T Consensus 82 -----------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARALal~P~liV~ 133 (268)
T COG4608 82 -----------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARALALNPKLIVA 133 (268)
T ss_pred -----------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHHHhhCCcEEEe
Confidence 22234678899999998875 44444 57999999999999999999999999
Q ss_pred eCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHHhhcchHHHHH
Q 001505 745 DDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSELVRQ 817 (1065)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l 817 (1065)
|||+||||.-+..+|.+ .+..+- .+-|.++|||+++...+ +|+|.||..|+|+|.|+-+|+..++...|.+.
T Consensus 134 DEpvSaLDvSiqaqIln-LL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~ 208 (268)
T COG4608 134 DEPVSALDVSVQAQILN-LLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKA 208 (268)
T ss_pred cCchhhcchhHHHHHHH-HHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHH
Confidence 99999999999988854 444332 37899999999999976 99999999999999999999998555566554
No 333
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=251.58 Aligned_cols=198 Identities=27% Similarity=0.374 Sum_probs=163.3
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
+|.++|.+|.|... .+|.| +++.+.||.+.+.||+|+|||||++.|-=.--|.+|+. .+.|
T Consensus 2 sirv~~in~~yg~~--------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l-~ia~~~fd~s~~~ 72 (242)
T COG4161 2 SIQLNGINCFYGAH--------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-NIAGNHFDFSKTP 72 (242)
T ss_pred ceEEcccccccccc--------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeE-EecccccccccCc
Confidence 48899999999754 57888 99999999999999999999999999876666889988 7654
Q ss_pred ----------eEEEEecCCCCC-CCcHHHHHhc------Ccccch--HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 ----------KKAYVPQSSWIQ-TGTIRENILF------GKDMRQ--SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 ----------~iayv~Q~pwif-~gTIreNIlf------G~~~d~--~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++.|.|+-.+. ..|+-||+.= |-+-++ .+-.+.++.-.|.+.-+.+| ..
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lh 141 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LH 141 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------ee
Confidence 389999998775 6799999862 322222 23345566666666555555 57
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhc-CCEEEEEeCCEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~ 798 (1065)
|||||+||++||||+.-+|+++|+||||+|||++...++.+ .|+++.. |-|-++|||.+++.++ |.+|+.|++|+|+
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~-iikel~~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH-HHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 99999999999999999999999999999999998888764 5666543 7899999999999865 8999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
|+|+++-.-+
T Consensus 221 e~g~a~~ft~ 230 (242)
T COG4161 221 EQGDASCFTE 230 (242)
T ss_pred eecchhhccC
Confidence 9999877654
No 334
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.1e-29 Score=313.43 Aligned_cols=199 Identities=27% Similarity=0.429 Sum_probs=159.7
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEE
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv 664 (1065)
+..++++|++++|++ .++++| |++|++|++++|+||+|||||||+++|.|+++|++|+| .++. +++|+
T Consensus 317 ~~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~i~y~ 387 (635)
T PRK11147 317 KIVFEMENVNYQIDG--------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGTKLEVAYF 387 (635)
T ss_pred CceEEEeeeEEEECC--------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCCcEEEEE
Confidence 346999999999964 358899 99999999999999999999999999999999999999 7743 59999
Q ss_pred ecCC-CCC-CCcHHHHHhcCcc-c--c--hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001505 665 PQSS-WIQ-TGTIRENILFGKD-M--R--QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1065)
Q Consensus 665 ~Q~p-wif-~gTIreNIlfG~~-~--d--~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~ 737 (1065)
+|++ -++ +.|+.||+.++.+ . + ..+..+.++..++..+. ...+...||||||||++||||+.+
T Consensus 388 ~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 388 DQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred eCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHHHHHHHHhc
Confidence 9986 344 5699999987542 1 1 22233444444443211 222345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh-cCCEEEEEe-CCEEEE-ecCHHHHHh
Q 001505 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD-AADLVLVMK-DGKIEQ-SGKYEDLIA 808 (1065)
Q Consensus 738 ~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~-~aD~Ilvl~-~G~I~e-~Gt~~eL~~ 808 (1065)
+|+++||||||++||..+.+.+ .+.++.. +.|+|+|||+.+++. .||+|++|+ +|+|.+ .|+|++.+.
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l-~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELL-EELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHH-HHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999997654 5666654 469999999999985 599999998 899976 689988754
No 335
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=4.4e-30 Score=312.15 Aligned_cols=192 Identities=19% Similarity=0.321 Sum_probs=159.3
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecC
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~ 667 (1065)
..++++|+++.|++. .|++ |+++++||+++|+||+|||||||+++|.|+.+|.+|+| .++-+++|+||+
T Consensus 339 ~~l~~~~ls~~~~~~---------~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I-~~~~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGDF---------SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-DPELKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECCE---------EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EEeeeEEEeccc
Confidence 458999999998532 3777 99999999999999999999999999999999999999 877789999999
Q ss_pred CCC-CCCcHHHHHhcCcc-cc-hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 001505 668 SWI-QTGTIRENILFGKD-MR-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIF 744 (1065)
Q Consensus 668 pwi-f~gTIreNIlfG~~-~d-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLL 744 (1065)
+-+ ++.|++||+.++.. ++ +...+++++..+|.+.. .....+||||||||++||||+.++|++|||
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~LSGGe~QRvaiAraL~~~p~llLL 477 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-----------DKNVKDLSGGELQRVAIAACLSRDADLYLL 477 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 764 67899999987632 22 23445677777765332 233457999999999999999999999999
Q ss_pred eCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCH
Q 001505 745 DDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 745 DDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||||++||+.+...+ .+.|+.+.+ ++|+|+|||+++++. .||+|++|++ ++...|+.
T Consensus 478 DEPt~~LD~~~~~~l-~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 478 DEPSAHLDVEQRLAV-AKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred eCCccCCCHHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 999999999998766 456776643 789999999999875 5999999965 88777763
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=3.3e-30 Score=309.89 Aligned_cols=192 Identities=23% Similarity=0.344 Sum_probs=153.1
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-CCCcEEEECC-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHG------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-~~G~i~~v~g------- 659 (1065)
..++++|+++.|++ ..+++| ||++++||+++|+||+|||||||+++|.|+.++ .+|+| .++|
T Consensus 259 ~~l~~~~l~~~~~~--------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i-~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSYND--------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL-TLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEECC--------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE-EEecccCCCCC
Confidence 46999999999964 358999 999999999999999999999999999998876 69998 7765
Q ss_pred -------eEEEEecCCCCC---CCcHHHHHhcCcc--------cc---hHHHHHHHHHhcchHHHHhhcCCCCccccCCC
Q 001505 660 -------KKAYVPQSSWIQ---TGTIRENILFGKD--------MR---QSFYEEVLEGCALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 660 -------~iayv~Q~pwif---~gTIreNIlfG~~--------~d---~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
+++|++|++.++ ..|++||+.++.. .+ +++.+++++.++|.++. ...+.
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~ 399 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT----------ADAPF 399 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh----------ccCch
Confidence 289999998653 2478877764310 11 23445566666554311 23344
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-C-cEEEEEcCCcchhhc--CCEEEEEeC
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-Q-KTVLYTTHQLEFLDA--ADLVLVMKD 794 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~-kTvIlVTH~l~~l~~--aD~Ilvl~~ 794 (1065)
.+||||||||++||||+..+|+++||||||++||+++.+.+. +.++.+.+ + .|+|+|||+++.+.. ||+|++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecC
Confidence 689999999999999999999999999999999999988775 55666543 4 469999999999864 899999999
Q ss_pred CEEEEe
Q 001505 795 GKIEQS 800 (1065)
Q Consensus 795 G~I~e~ 800 (1065)
|+|++.
T Consensus 479 G~i~~~ 484 (490)
T PRK10938 479 GDIYRY 484 (490)
T ss_pred CceEEe
Confidence 999864
No 337
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=276.43 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=170.1
Q ss_pred CccEEEeeeEEEecccccccCC---CcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----
Q 001505 588 DVAIDIEAGEYAWDAREENFKK---PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG---- 659 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~---~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g---- 659 (1065)
...++.+|+...|+-...-+.. .-...++ |++.++||.++|||+||||||||-.+|++++++. |+| ..+|
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I-~F~G~~i~ 351 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEI-RFDGQDID 351 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceE-EECCcccc
Confidence 3468889998888754211111 1123445 9999999999999999999999999999999876 998 8777
Q ss_pred ------------eEEEEecCCC---CCCCcHHHHHhcCcc------cchH---HHHHHHHHhcchHH-HHhhcCCCCccc
Q 001505 660 ------------KKAYVPQSSW---IQTGTIRENILFGKD------MRQS---FYEEVLEGCALNQD-IEMWADGDLSVV 714 (1065)
Q Consensus 660 ------------~iayv~Q~pw---if~gTIreNIlfG~~------~d~~---~y~~vl~ac~L~~d-i~~Lp~Gd~T~I 714 (1065)
++-.|.|+|+ =...||.+-|.=|-. -+.| +..++++..+|+.. ....|
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP------- 424 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP------- 424 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC-------
Confidence 3789999998 246788888875532 1234 44455666778754 33444
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhc-CCEEEE
Q 001505 715 GERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADLVLV 791 (1065)
Q Consensus 715 Ge~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~-aD~Ilv 791 (1065)
...|||||||||||||+.-+|.+++|||||||||..+..+|++ .++.+- .+-+=++|+|++..++. ||+|+|
T Consensus 425 ----hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viV 499 (534)
T COG4172 425 ----HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIV 499 (534)
T ss_pred ----cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEE
Confidence 4799999999999999999999999999999999999998865 455443 36699999999999875 999999
Q ss_pred EeCCEEEEecCHHHHHhhcchHHHH
Q 001505 792 MKDGKIEQSGKYEDLIADQNSELVR 816 (1065)
Q Consensus 792 l~~G~I~e~Gt~~eL~~~~~~~~~~ 816 (1065)
|+||+|+|+|+-+++.+++..+|.+
T Consensus 500 m~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 500 MRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 9999999999999999866666654
No 338
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=8.3e-30 Score=263.46 Aligned_cols=147 Identities=30% Similarity=0.485 Sum_probs=119.9
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------EEEEecCCCCCCCcHHHHHh
Q 001505 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------KAYVPQSSWIQTGTIRENIL 680 (1065)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------iayv~Q~pwif~gTIreNIl 680 (1065)
..++++| ||++++|++++|+|||||||||||++|++ .+|++ .++|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v-~~~~~~~~~~~~~~~~~~q-------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKA-RLISFLPKFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcE-EECCcccccccccEEEEhH--------------
Confidence 3578889 99999999999999999999999999974 58998 77764 444444
Q ss_pred cCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHhHHHH
Q 001505 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN--SDVYIFDDPFSAVDAHTGTH 758 (1065)
Q Consensus 681 fG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~--adIlLLDDp~SALD~~t~~~ 758 (1065)
.++++..+| ++. ..+++..+||||||||++||||++++ |+++||||||++||+++.+.
T Consensus 68 ----------~~~l~~~~L---------~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~ 127 (176)
T cd03238 68 ----------LQFLIDVGL---------GYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127 (176)
T ss_pred ----------HHHHHHcCC---------Ccc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHH
Confidence 223333332 221 25677889999999999999999999 99999999999999999877
Q ss_pred HHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEEeCCE
Q 001505 759 LFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1065)
Q Consensus 759 if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl~~G~ 796 (1065)
+. +.++.+. +++|+|+|||+++.+..||+|++|++|+
T Consensus 128 l~-~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 128 LL-EVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HH-HHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 64 4566554 5899999999999999999999997643
No 339
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4.2e-30 Score=268.72 Aligned_cols=197 Identities=23% Similarity=0.365 Sum_probs=163.7
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe---------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------- 660 (1065)
.+.++++.++.. -..++| ||++++||+++++||+|+||||++++|.|.|+|++|+| ..+|+
T Consensus 5 L~v~~l~k~FGG--------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v-~~~G~~it~l~p~~ 75 (250)
T COG0411 5 LEVRGLSKRFGG--------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV-IFRGRDITGLPPHR 75 (250)
T ss_pred eeeccceeecCC--------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceE-EECCcccCCCCHHH
Confidence 567888888764 357888 99999999999999999999999999999999999999 88873
Q ss_pred -----EEEEecCCCCCC-CcHHHHHhcCcc-------------c--c-h---HHHHHHHHHhcchHHHHhhcCCCCcccc
Q 001505 661 -----KAYVPQSSWIQT-GTIRENILFGKD-------------M--R-Q---SFYEEVLEGCALNQDIEMWADGDLSVVG 715 (1065)
Q Consensus 661 -----iayv~Q~pwif~-gTIreNIlfG~~-------------~--d-~---~~y~~vl~ac~L~~di~~Lp~Gd~T~IG 715 (1065)
|+--.|.+-+|. .|+-||++-|.. + + + ++-.+.++.++|. -.-.
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-----------~~a~ 144 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-----------ELAD 144 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-----------hhhc
Confidence 788999999985 699999987622 1 0 1 1222333444443 3345
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchh-hcCCEEEEE
Q 001505 716 ERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFL-DAADLVLVM 792 (1065)
Q Consensus 716 e~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l-~~aD~Ilvl 792 (1065)
+...+||+||+.|+.||||+..+|+++|||||.+++.+.-...+. +.|+.+.+ +.|+++|-|+++.+ ..||+|+||
T Consensus 145 ~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~-~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 145 RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred chhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEEeccHHHhhhccEEEec
Confidence 667799999999999999999999999999999999998877775 46777664 48999999999997 559999999
Q ss_pred eCCEEEEecCHHHHHh
Q 001505 793 KDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 793 ~~G~I~e~Gt~~eL~~ 808 (1065)
+.|+++.+|+++|..+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999986
No 340
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=3.8e-30 Score=310.33 Aligned_cols=194 Identities=20% Similarity=0.364 Sum_probs=154.0
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.++++|++. ..++| |+++++|++++|+||+|||||||+++|.|.++|.+|+| .++|
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~ 333 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI-MLNGKEINALSTA 333 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEECCCCCHH
Confidence 588888872 14788 99999999999999999999999999999999999999 8876
Q ss_pred -----eEEEEecCC---CCC-CCcHHHHHhcCc----cc--ch----HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----KKAYVPQSS---WIQ-TGTIRENILFGK----DM--RQ----SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----~iayv~Q~p---wif-~gTIreNIlfG~----~~--d~----~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.++|+||++ -++ +.|+.||+.... .. +. ++.+++++.+++.. .....+...
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~ 403 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAART 403 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCcccc
Confidence 289999986 244 469999996320 11 11 12223333333210 123445678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~ 798 (1065)
||||||||++||||+..+|+++||||||++||+.+.+.+. +.++.+. +++|+|+|||+++++. .||+|++|++|+|+
T Consensus 404 LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~ 482 (510)
T PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY-QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482 (510)
T ss_pred CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999987764 4565543 4789999999999986 49999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
..|+.+++..
T Consensus 483 ~~~~~~~~~~ 492 (510)
T PRK15439 483 GALTGAAINV 492 (510)
T ss_pred EEEccccCCH
Confidence 9998887654
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-29 Score=310.71 Aligned_cols=204 Identities=23% Similarity=0.330 Sum_probs=154.5
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEecC
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQS 667 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~Q~ 667 (1065)
|+++|++++|+. ..+++| ||+|++|++++|+||+|||||||+++|.|+++|++|+| .++| +++|++|+
T Consensus 2 i~i~nls~~~g~--------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I-~~~~~~~i~~~~q~ 72 (638)
T PRK10636 2 IVFSSLQIRRGV--------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPGNWQLAWVNQE 72 (638)
T ss_pred EEEEEEEEEeCC--------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EecCCCEEEEEecC
Confidence 689999999964 368999 99999999999999999999999999999999999999 8877 58999997
Q ss_pred CCCCCCcHHHHHhcCcc-cc--------------hHHHHHHHHH----------hcchHHHHhhcCCCC-ccccCCCCCC
Q 001505 668 SWIQTGTIRENILFGKD-MR--------------QSFYEEVLEG----------CALNQDIEMWADGDL-SVVGERGINL 721 (1065)
Q Consensus 668 pwif~gTIreNIlfG~~-~d--------------~~~y~~vl~a----------c~L~~di~~Lp~Gd~-T~IGe~G~nL 721 (1065)
+..+..|+.+++.-+.. +. ...|...... ....+-++.+ |.. ........+|
T Consensus 73 ~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~L 150 (638)
T PRK10636 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERPVSDF 150 (638)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCchhhc
Confidence 65556677776642210 00 0011000000 0001112222 221 1223445689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEE-E
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE-Q 799 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~-e 799 (1065)
|||||||++||||+..+||++||||||++||+.+...+ .+.+... ++|+|+|||+.+++.. ||+|++|++|++. .
T Consensus 151 SgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L-~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWL-EKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHH-HHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999998765 4556554 5799999999999865 9999999999996 5
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+|++...
T Consensus 228 ~g~~~~~~~ 236 (638)
T PRK10636 228 TGNYSSFEV 236 (638)
T ss_pred cCCHHHHHH
Confidence 799987764
No 342
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.3e-29 Score=290.87 Aligned_cols=194 Identities=25% Similarity=0.380 Sum_probs=162.0
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------- 660 (1065)
.-++++|++.+|+. ...|++ ||++.+||.+|++|.+|+|||||++.|.|-|+|++|+| .++|+
T Consensus 7 ~ll~~~~i~K~Fgg--------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I-~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSFGG--------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI-LIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEcCC--------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE-EECCEEccCCCH
Confidence 35889999999975 478999 99999999999999999999999999999999999999 99984
Q ss_pred -------EEEEecCCCCC-CCcHHHHHhcCcccc-------hHHHH----HHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 661 -------KAYVPQSSWIQ-TGTIRENILFGKDMR-------QSFYE----EVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 661 -------iayv~Q~pwif-~gTIreNIlfG~~~d-------~~~y~----~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
|+.|.|++-|. |-||.|||-+|++.. ..+.+ ++++..++. ..-+|. -.+|
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~----v~~L 146 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTL----VGDL 146 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhh----hhhC
Confidence 89999998875 789999998887532 22222 222222221 113344 4579
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e 799 (1065)
|+||||-|+||||++.+++|+|||||||||+.+-.+++|+ .++.+. +|.++|+|||+++.+ .-||+|.||+||+.+.
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 9999999999999999999999999999999999888875 566654 589999999999886 5599999999999998
Q ss_pred ecCH
Q 001505 800 SGKY 803 (1065)
Q Consensus 800 ~Gt~ 803 (1065)
.++.
T Consensus 226 ~~~~ 229 (500)
T COG1129 226 TRPT 229 (500)
T ss_pred eccc
Confidence 7773
No 343
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.3e-30 Score=258.69 Aligned_cols=197 Identities=28% Similarity=0.459 Sum_probs=167.5
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe---------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------- 660 (1065)
|+++|++.+|.. +.++.+ |++|++|.+++++||+|+||||||+.+.+++++++|+| .++|.
T Consensus 2 I~i~nv~K~y~~--------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i-~i~g~~~~~~~s~~ 72 (252)
T COG4604 2 ITIENVSKSYGT--------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI-TIDGLELTSTPSKE 72 (252)
T ss_pred eeehhhhHhhCC--------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceE-EEeeeecccCChHH
Confidence 678899999964 578999 99999999999999999999999999999999999999 99983
Q ss_pred ----EEEEecCCCCC-CCcHHHHHhcCc-cc--------chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHH
Q 001505 661 ----KAYVPQSSWIQ-TGTIRENILFGK-DM--------RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQK 726 (1065)
Q Consensus 661 ----iayv~Q~pwif-~gTIreNIlfG~-~~--------d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQK 726 (1065)
++..-|+..+. +-||||=..||+ || |+...+++++--.|. .+.+.+. -.||||||
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~----~l~dryL-------d~LSGGQr 141 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE----DLSDRYL-------DELSGGQR 141 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc----chHHHhH-------Hhcccchh
Confidence 67888888775 569999999997 55 344566666665553 3333333 36999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCH
Q 001505 727 QRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 727 QRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
||.=+|-.+.+|.|-++||||+.+||-..+..+++ .++.+.. +||+|+|-|+..|.. .+|+|+-|+||+++.+|++
T Consensus 142 QRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk-~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred hhhhhheeeeccCcEEEecCcccccchHHHHHHHH-HHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCH
Confidence 99999999999999999999999999988888765 3444432 899999999999975 5999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
+|+++
T Consensus 221 ~eii~ 225 (252)
T COG4604 221 DEIIQ 225 (252)
T ss_pred HHhcC
Confidence 99997
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=5.9e-29 Score=306.94 Aligned_cols=203 Identities=24% Similarity=0.361 Sum_probs=154.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--EEEEec
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KAYVPQ 666 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--iayv~Q 666 (1065)
.|+++|++++|++ .++++| ||+|++|++++|+||+|||||||+++|.|+++|++|+| .++|. ++|++|
T Consensus 3 ~l~i~~ls~~~~~--------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I-~~~~~~~~~~l~q 73 (635)
T PRK11147 3 LISIHGAWLSFSD--------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI-IYEQDLIVARLQQ 73 (635)
T ss_pred EEEEeeEEEEeCC--------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EeCCCCEEEEecc
Confidence 3789999999964 368999 99999999999999999999999999999999999999 88774 789999
Q ss_pred CCCC-CCCcHHHHHhcCccc--c-hHHHH-------------------HH---HHH-------hcchHHHHhhcCCCCcc
Q 001505 667 SSWI-QTGTIRENILFGKDM--R-QSFYE-------------------EV---LEG-------CALNQDIEMWADGDLSV 713 (1065)
Q Consensus 667 ~pwi-f~gTIreNIlfG~~~--d-~~~y~-------------------~v---l~a-------c~L~~di~~Lp~Gd~T~ 713 (1065)
.+.. ..+++.+++..+... + ...++ ++ ++. ....+-++.+ |..
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~-- 149 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GLD-- 149 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CCC--
Confidence 8643 347888886533210 0 00000 00 000 0001112222 211
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEE
Q 001505 714 VGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVM 792 (1065)
Q Consensus 714 IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl 792 (1065)
....-..|||||||||+||||+..+||++||||||++||+++.+++ .+.+..+ +.|+|+|||+.+++.. ||+|++|
T Consensus 150 ~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L-~~~L~~~--~~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 150 PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL-EGFLKTF--QGSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHH-HHHHHhC--CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 1234568999999999999999999999999999999999998766 4566655 3699999999999865 9999999
Q ss_pred eCCEEEE-ecCHHHHHh
Q 001505 793 KDGKIEQ-SGKYEDLIA 808 (1065)
Q Consensus 793 ~~G~I~e-~Gt~~eL~~ 808 (1065)
++|+++. .|+|++.++
T Consensus 227 ~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 227 DRGKLVSYPGNYDQYLL 243 (635)
T ss_pred ECCEEEEecCCHHHHHH
Confidence 9999974 699988765
No 345
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-29 Score=303.11 Aligned_cols=200 Identities=19% Similarity=0.299 Sum_probs=153.4
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------- 660 (1065)
..|+++|+++.+ .+++++ |+++++||+++|+|++|||||||+++|.|+.+|.+|+| .++|.
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTI-TLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEE-EECCEECCCCCH
Confidence 358999998862 247889 99999999999999999999999999999999999999 88872
Q ss_pred -------EEEEecCCC---CC-CCcHHHHHhcC-----cc----cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 661 -------KAYVPQSSW---IQ-TGTIRENILFG-----KD----MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 661 -------iayv~Q~pw---if-~gTIreNIlfG-----~~----~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
++|++|++- +| +.|+.+|+.++ .+ .++...+ ....+.++.+.-+++ .......+
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~-~~~~~~~~ 391 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTP-GHRTQIGS 391 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCC-Cccccccc
Confidence 789999852 33 46777774332 11 1111111 111222333322111 13556678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-cCCEEEEEeCCEEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-AADLVLVMKDGKIE 798 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~ 798 (1065)
||||||||++||||+.++|+|+||||||++||+.+.+.+.+ .++.+. +++|+|+|||+++.+. .||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH-HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999887754 565543 4899999999999875 59999999999999
Q ss_pred EecCHHHH
Q 001505 799 QSGKYEDL 806 (1065)
Q Consensus 799 e~Gt~~eL 806 (1065)
..++.+++
T Consensus 471 ~~~~~~~~ 478 (491)
T PRK10982 471 GIVDTKTT 478 (491)
T ss_pred EEEccccC
Confidence 88766433
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=7.6e-29 Score=325.28 Aligned_cols=207 Identities=26% Similarity=0.420 Sum_probs=165.8
Q ss_pred cEEEeeeEEEecccccc-----cCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCccc--CCCCcEEEECC--
Q 001505 590 AIDIEAGEYAWDAREEN-----FKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHG-- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~-----~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~--~~~G~i~~v~g-- 659 (1065)
.+.++|+++..+..... ......+|+| |+++++|+++||+||+||||||||++|.|..+ +.+|+| .++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I-~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceE-EECCcc
Confidence 58899999887642110 0122468999 99999999999999999999999999999876 378998 8887
Q ss_pred --------eEEEEecCCCCC-CCcHHHHHhcCc------ccch-H---HHHHHHHHhcchHHHHhhcCCCCccccCCC-C
Q 001505 660 --------KKAYVPQSSWIQ-TGTIRENILFGK------DMRQ-S---FYEEVLEGCALNQDIEMWADGDLSVVGERG-I 719 (1065)
Q Consensus 660 --------~iayv~Q~pwif-~gTIreNIlfG~------~~d~-~---~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G-~ 719 (1065)
.+|||+|++.++ +.|++||+.|+. ..++ + +.+++++..+|.+. .++.+|..| .
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~ 1018 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGVT 1018 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCCC
Confidence 279999997665 579999998852 1222 2 34567777766532 367787655 5
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcch--hhcCCEEEEEeC-C
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEF--LDAADLVLVMKD-G 795 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~--l~~aD~Ilvl~~-G 795 (1065)
.||||||||++||||+..+|+|++||||||+||++++..+. +.++.+. +++|+|++||+++. ...+|++++|++ |
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~-~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 79999999999999999999999999999999999988775 4566543 47999999999984 578999999986 8
Q ss_pred EEEEecCHHH
Q 001505 796 KIEQSGKYED 805 (1065)
Q Consensus 796 ~I~e~Gt~~e 805 (1065)
+++..|+..+
T Consensus 1098 ~~v~~G~~~~ 1107 (1470)
T PLN03140 1098 QVIYSGPLGR 1107 (1470)
T ss_pred EEEEECCccc
Confidence 9999998643
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.5e-28 Score=249.02 Aligned_cols=140 Identities=41% Similarity=0.647 Sum_probs=123.9
Q ss_pred EeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-----------
Q 001505 593 IEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----------- 660 (1065)
Q Consensus 593 ~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~----------- 660 (1065)
++|++|+|++. +.+++ |+++++|+.++|+|++|||||||+++|.|++++.+|++ .++|.
T Consensus 2 ~~~~~~~~~~~--------~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGGR--------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-LIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCCe--------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccCCHHHHH
Confidence 67899998642 57888 99999999999999999999999999999999999999 88873
Q ss_pred --EEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001505 661 --KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1065)
Q Consensus 661 --iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ 738 (1065)
++|++| ||||||||++||||+..+
T Consensus 73 ~~i~~~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 73 RRIGYVPQ------------------------------------------------------LSGGQRQRVALARALLLN 98 (157)
T ss_pred hceEEEee------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 555555 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhc-CCEEEEEeCCE
Q 001505 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1065)
Q Consensus 739 adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~l~~-aD~Ilvl~~G~ 796 (1065)
|++++|||||++||..+...+ .+.+....+ ++|++++||+++.++. ||++++|++|+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l-~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERL-LELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999997765 456655443 5899999999999988 59999999985
No 348
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=4e-28 Score=274.70 Aligned_cols=191 Identities=29% Similarity=0.446 Sum_probs=160.7
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------- 660 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------- 660 (1065)
..++++|.+..|+. ...+++ ||++++||+.|+.|++|+|||||.+.|.|.|+|++|+| .++|+
T Consensus 3 ~~l~~~~itK~f~~--------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI-~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRFPG--------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEcCC--------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE-EECCEEeccCCH
Confidence 46899999999984 345666 99999999999999999999999999999999999999 99994
Q ss_pred -------EEEEecCCCCC-CCcHHHHHhcCccc------c----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 661 -------KAYVPQSSWIQ-TGTIRENILFGKDM------R----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 661 -------iayv~Q~pwif-~gTIreNIlfG~~~------d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
|+.|.|.+-|+ +-|+.|||..|.+- | +++.++..+..+|.=| ..++-..||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLs 142 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLS 142 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCC
Confidence 89999999886 67999999999863 2 2344455555555433 234456799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEe
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS 800 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~ 800 (1065)
=||||||.|=+|||++|+++|||||||-|-|.-.+++|+ .++.+. .|||||+|||+++.+.. ||+|-||++|+++..
T Consensus 143 VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 999999999999999999999999999999998888886 455543 59999999999988755 999999999998643
No 349
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2e-28 Score=249.35 Aligned_cols=190 Identities=26% Similarity=0.343 Sum_probs=155.1
Q ss_pred CcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------------EEEEecCCC---CCC
Q 001505 610 PTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQSSW---IQT 672 (1065)
Q Consensus 610 ~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~-------------iayv~Q~pw---if~ 672 (1065)
++++|++ +++|++|+++.|+|.+|+|||||+++|.|.++|++|+| .++|. ++-|.|+|- --+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I-~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI-LIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE-EECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 4678988 99999999999999999999999999999999999999 99983 678899996 457
Q ss_pred CcHHHHHhcCcccchH-HHHHHHH---HhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 001505 673 GTIRENILFGKDMRQS-FYEEVLE---GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1065)
Q Consensus 673 gTIreNIlfG~~~d~~-~y~~vl~---ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~ 748 (1065)
.||.||+.....--+. -+...+. ...-.+-++.+|.|.+-..+.+-.-|||||||=++|+-|..+.|+|++|||=|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 8999999864211000 0111111 11223457788999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcch-hhcCCEEEEEeCCEEEEe
Q 001505 749 SAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEF-LDAADLVLVMKDGKIEQS 800 (1065)
Q Consensus 749 SALD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~-l~~aD~Ilvl~~G~I~e~ 800 (1065)
+||||.+++.+++..-+-.-+ +-|.++|||+++- +..-+|.++|++|+|+-.
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 999999998887643222222 4599999999975 788999999999999864
No 350
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=283.90 Aligned_cols=204 Identities=25% Similarity=0.383 Sum_probs=161.6
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEec
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVPQ 666 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~Q 666 (1065)
.|.++|++++|+. ++.++| |+++.+|+++++||++|+||||||++|.|+..|++|+| ...+ +++|++|
T Consensus 3 ~i~~~~ls~~~g~--------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i-~~~~~~~v~~l~Q 73 (530)
T COG0488 3 MITLENLSLAYGD--------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV-TRPKGLRVGYLSQ 73 (530)
T ss_pred eEEEeeeEEeeCC--------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE-eecCCceEEEeCC
Confidence 4789999999953 578889 99999999999999999999999999999999999999 7766 7999999
Q ss_pred CCCCCCC-cHHHHHhcCccc-c--hHHHHHHHHH-------------------------hcchHHHHhhcCCCCccccCC
Q 001505 667 SSWIQTG-TIRENILFGKDM-R--QSFYEEVLEG-------------------------CALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 667 ~pwif~g-TIreNIlfG~~~-d--~~~y~~vl~a-------------------------c~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
++-.... |++|.++-|... . ..+|+++... .....-+..| |...+ ...
T Consensus 74 ~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~-~~~ 150 (530)
T COG0488 74 EPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE-DRP 150 (530)
T ss_pred CCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc-cCc
Confidence 9999855 999999987531 0 1122222110 0111122222 22222 233
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCE
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGK 796 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~ 796 (1065)
-.+||||||-|++||||+..+||++||||||..||..+-+++ ++.+.+ .++ |+|+|||+-+||.. |++|+.+++|+
T Consensus 151 ~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 151 VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCCc
Confidence 467999999999999999999999999999999999998776 555543 345 99999999999976 89999999998
Q ss_pred EE-EecCHHHHHh
Q 001505 797 IE-QSGKYEDLIA 808 (1065)
Q Consensus 797 I~-e~Gt~~eL~~ 808 (1065)
+. ..|+|+..++
T Consensus 228 l~~y~Gny~~~~~ 240 (530)
T COG0488 228 LTPYKGNYSSYLE 240 (530)
T ss_pred eeEecCCHHHHHH
Confidence 75 6789988876
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=3.4e-28 Score=320.43 Aligned_cols=189 Identities=21% Similarity=0.239 Sum_probs=154.7
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc----cCCCCcEEEECCe------------EEEEecCCCCC-C
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI----PRISGAAIKVHGK------------KAYVPQSSWIQ-T 672 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~----~~~~G~i~~v~g~------------iayv~Q~pwif-~ 672 (1065)
+.+|+| |+++++||+++|+||+||||||||++|.|.. ++.+|+| .++|. ++||+|++.++ +
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I-~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI-TYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE-EECCEehHHHHhhcCceeEEeccccccCCC
Confidence 457888 9999999999999999999999999999986 4689999 88872 89999997666 4
Q ss_pred CcHHHHHhcCcc----------cchHHHH-----HHHHHhcchHHHHhhcCCCCccccC-CCCCCCHHHHHHHHHHHHHc
Q 001505 673 GTIRENILFGKD----------MRQSFYE-----EVLEGCALNQDIEMWADGDLSVVGE-RGINLSGGQKQRIQLARAVY 736 (1065)
Q Consensus 673 gTIreNIlfG~~----------~d~~~y~-----~vl~ac~L~~di~~Lp~Gd~T~IGe-~G~nLSGGQKQRIaLARAly 736 (1065)
.|++||+.|+.. .+++.+. ++++..+| .+--+|.||+ ....||||||||++||||+.
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 699999998531 2222221 23333333 3345788876 45689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcc-h-hhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 737 SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLE-F-LDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 737 ~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~-~-l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
.+|+|++||||||+||+.++..+. +.++.+. .++|+|+++||+. . ...+|+|++|++|+++..|+.+++.+
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 999999999999999999988875 4676654 3799999999973 3 46799999999999999999998853
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=3.4e-28 Score=295.66 Aligned_cols=178 Identities=26% Similarity=0.347 Sum_probs=145.8
Q ss_pred eeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEE-----------ECC---
Q 001505 595 AGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-----------VHG--- 659 (1065)
Q Consensus 595 n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~-----------v~g--- 659 (1065)
++++.|..+ ...|++ + .+++|++++|+||+|||||||+++|.|+++|++|+| . ++|
T Consensus 78 ~~~~~yg~~-------~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i-~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 78 EPVHRYGVN-------GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY-EEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred CceEEecCC-------ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc-cCCCcHHHHHHHhCChHH
Confidence 367777643 467888 8 899999999999999999999999999999999998 5 544
Q ss_pred ------------e----EEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCH
Q 001505 660 ------------K----KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSG 723 (1065)
Q Consensus 660 ------------~----iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSG 723 (1065)
+ +.|++|.|.++.+|++||+.+.. ..++.+++++..+|.+.. ...-.+|||
T Consensus 149 ~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~-----------~~~~~~LSg 215 (590)
T PRK13409 149 QNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENIL-----------DRDISELSG 215 (590)
T ss_pred HHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhh-----------cCChhhCCH
Confidence 1 34566678888999999997532 234667777777765432 223457999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCC
Q 001505 724 GQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1065)
Q Consensus 724 GQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G 795 (1065)
|||||++||||+.++|++||||||||+||++...++. +.|+.+.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 216 Ge~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~-~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 216 GELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVA-RLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999988775 467666558999999999999865 8999999873
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=3.9e-28 Score=318.63 Aligned_cols=196 Identities=22% Similarity=0.357 Sum_probs=157.5
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC---CCcEEEECC----------eEEEEecCCCCC-CCcH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----------KKAYVPQSSWIQ-TGTI 675 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~---~G~i~~v~g----------~iayv~Q~pwif-~gTI 675 (1065)
..+|+| |+.+++||+++|+||+||||||||++|.|.+++. +|+| .++| .++||+|++.++ +.|+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I-~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI-TYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEechhhcccceeEEecccccCCCcCcH
Confidence 457888 9999999999999999999999999999999988 9999 8877 389999997655 5799
Q ss_pred HHHHhcCcc-------cc-------hH---------HHHHHHHHhcc---------hHHHH--hhcCCCCccccCCC-CC
Q 001505 676 RENILFGKD-------MR-------QS---------FYEEVLEGCAL---------NQDIE--MWADGDLSVVGERG-IN 720 (1065)
Q Consensus 676 reNIlfG~~-------~d-------~~---------~y~~vl~ac~L---------~~di~--~Lp~Gd~T~IGe~G-~n 720 (1065)
+||+.|+.. ++ ++ +.++..+++.. ++-++ .|++-.+|.||++. ..
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999998531 10 11 11112222221 11222 24555688998754 58
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCc--chhhcCCEEEEEeCCE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQL--EFLDAADLVLVMKDGK 796 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l--~~l~~aD~Ilvl~~G~ 796 (1065)
||||||||++||||+..+|++++|||||++||+.++..+. ++++.+. .++|+|+++||+ +....+|+|++|++|+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999998876 5676653 479999999997 4567899999999999
Q ss_pred EEEecCHHHHHh
Q 001505 797 IEQSGKYEDLIA 808 (1065)
Q Consensus 797 I~e~Gt~~eL~~ 808 (1065)
++..|+.+|+.+
T Consensus 416 ivy~G~~~~~~~ 427 (1470)
T PLN03140 416 IVYQGPRDHILE 427 (1470)
T ss_pred EEEeCCHHHHHH
Confidence 999999998874
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.6e-28 Score=251.32 Aligned_cols=195 Identities=25% Similarity=0.395 Sum_probs=155.1
Q ss_pred CCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC------
Q 001505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG------ 659 (1065)
Q Consensus 587 ~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g------ 659 (1065)
.+.-|+++|++..|.+ +++|+| |.+|++||..+|+||+||||||||+.+.|+++|.+|.+ .+-|
T Consensus 28 ~~~li~l~~v~v~r~g--------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~-~~~G~~~G~~ 98 (257)
T COG1119 28 NEPLIELKNVSVRRNG--------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV-TLLGRRFGKG 98 (257)
T ss_pred CcceEEecceEEEECC--------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce-eeeeeeccCC
Confidence 3456999999999975 579999 99999999999999999999999999999999999998 6654
Q ss_pred --------eEEEEec---CCCCCCCcHHHHHhcCc---------ccchHHHHHH---HHHhcchHHHHhhcCCCCccccC
Q 001505 660 --------KKAYVPQ---SSWIQTGTIRENILFGK---------DMRQSFYEEV---LEGCALNQDIEMWADGDLSVVGE 716 (1065)
Q Consensus 660 --------~iayv~Q---~pwif~gTIreNIlfG~---------~~d~~~y~~v---l~ac~L~~di~~Lp~Gd~T~IGe 716 (1065)
+||||+- +-..-+.+++|-|+-|. +++++.++++ ++.+++.+ ..+.
T Consensus 99 ~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----------la~r 167 (257)
T COG1119 99 ETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----------LADR 167 (257)
T ss_pred cchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----------hccC
Confidence 4899974 23334678888887442 4455544433 33333322 2334
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC---CcEEEEEcCCcchhh-cCCEEEEE
Q 001505 717 RGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS---QKTVLYTTHQLEFLD-AADLVLVM 792 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~---~kTvIlVTH~l~~l~-~aD~Ilvl 792 (1065)
.=..||-|||||+-||||+..+|+++|||||+++||....+.+.+ .+.++.. ..|+|+|||+.+.++ .+++++.+
T Consensus 168 ~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~-~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll 246 (257)
T COG1119 168 PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLN-RLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246 (257)
T ss_pred chhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHhcCCCCceEEEEEcchhhcccccceEEEe
Confidence 446899999999999999999999999999999999998766544 4544432 689999999998864 57999999
Q ss_pred eCCEEEEecC
Q 001505 793 KDGKIEQSGK 802 (1065)
Q Consensus 793 ~~G~I~e~Gt 802 (1065)
++|+++.+|.
T Consensus 247 ~~g~v~~~g~ 256 (257)
T COG1119 247 KEGEVVAQGK 256 (257)
T ss_pred eCCceeeccc
Confidence 9999999874
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.1e-26 Score=243.45 Aligned_cols=185 Identities=28% Similarity=0.373 Sum_probs=157.8
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecC--CCCCCCcHHHHHhcC-----
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS--SWIQTGTIRENILFG----- 682 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~--pwif~gTIreNIlfG----- 682 (1065)
..+|+| ||++++||.++|+|++|||||||++.|.|-++|++|+| .++|++++.--- ..-.+.|-||||.+-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v-~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV-KVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceE-EEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 468999 99999999999999999999999999999999999999 999999854332 334567999999752
Q ss_pred --cccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHH
Q 001505 683 --KDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1065)
Q Consensus 683 --~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if 760 (1065)
+..-+++++++++-+.|.+++.. | -.+.|-|.+.|++.|=|...+|||||+||.+|..|+.=.++-.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 22345789999999999887642 2 3689999999999999999999999999999999998765443
Q ss_pred HHHHhhh-cCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHHh
Q 001505 761 KQCLMGL-LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 761 ~~~i~~l-l~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
++ ++.+ .+++|+|+|||+++.+++ ||+++.|++|+|...|+.+|..+
T Consensus 188 ~r-l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 188 ER-LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HH-HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 32 3444 678999999999999865 99999999999999999999986
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=1.6e-26 Score=285.94 Aligned_cols=203 Identities=22% Similarity=0.278 Sum_probs=147.7
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecC
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~ 667 (1065)
..|+++|++++|++ .+.|+| ||+|++|++++|||++|||||||+++|.|+. ..| + .-+|+|+|++|+
T Consensus 176 ~~I~i~nls~~y~~--------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~--~~g-~-p~~g~I~~~~Q~ 243 (718)
T PLN03073 176 KDIHMENFSISVGG--------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA--IDG-I-PKNCQILHVEQE 243 (718)
T ss_pred eeEEEceEEEEeCC--------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCC-C-CCCCEEEEEecc
Confidence 45999999999964 358999 9999999999999999999999999999974 224 3 456788999998
Q ss_pred CCCCCCcHHHHHhcCc-------------------------------------ccch--HHHHHHHHHhcch--------
Q 001505 668 SWIQTGTIRENILFGK-------------------------------------DMRQ--SFYEEVLEGCALN-------- 700 (1065)
Q Consensus 668 pwif~gTIreNIlfG~-------------------------------------~~d~--~~y~~vl~ac~L~-------- 700 (1065)
+--.+-|+.|.++-.. +.++ +++.++.+...+.
T Consensus 244 ~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 244 VVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 6444445544322110 0010 1222222222211
Q ss_pred --HHHHhhcCCCC-ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEc
Q 001505 701 --QDIEMWADGDL-SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTT 777 (1065)
Q Consensus 701 --~di~~Lp~Gd~-T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVT 777 (1065)
+-++.+ |.. ......-.+||||||||++||||+..+|+++||||||++||++....+. +.++.+ ++|+|+||
T Consensus 324 ~~~~L~~l--gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~~tviivs 398 (718)
T PLN03073 324 AASILAGL--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE-TYLLKW--PKTFIVVS 398 (718)
T ss_pred HHHHHHHC--CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHc--CCEEEEEE
Confidence 011111 111 0112234689999999999999999999999999999999999987764 456554 68999999
Q ss_pred CCcchhhc-CCEEEEEeCCEEE-EecCHHHHHh
Q 001505 778 HQLEFLDA-ADLVLVMKDGKIE-QSGKYEDLIA 808 (1065)
Q Consensus 778 H~l~~l~~-aD~Ilvl~~G~I~-e~Gt~~eL~~ 808 (1065)
|+.+++.. ||+|++|++|++. ..|+|++...
T Consensus 399 Hd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 399 HAREFLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999876 9999999999996 6899887654
No 357
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=6.4e-27 Score=225.09 Aligned_cols=182 Identities=23% Similarity=0.354 Sum_probs=143.6
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC---CCcEEEECC-------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~---~G~i~~v~g------- 659 (1065)
..++|++..-++ .-.|.+ |++|.+||++-+.||+|||||||++-+.|.+.+. +|++ .+++
T Consensus 3 l~l~nvsl~l~g--------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~-~l~~~~l~~lP 73 (213)
T COG4136 3 LCLKNVSLRLPG--------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL-WLNEQRLDMLP 73 (213)
T ss_pred eeeeeeeecCCC--------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEE-EECCeeccccc
Confidence 456777765543 356777 9999999999999999999999999999998764 6887 7776
Q ss_pred ----eEEEEecCCCCCC-CcHHHHHhcCcccc------hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH
Q 001505 660 ----KKAYVPQSSWIQT-GTIRENILFGKDMR------QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR 728 (1065)
Q Consensus 660 ----~iayv~Q~pwif~-gTIreNIlfG~~~d------~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR 728 (1065)
+++...|+||+|. -+|-+||+|.-|.+ +..-+.+++..+|.....+.| .+||||||.|
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrAR 142 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRAR 142 (213)
T ss_pred hhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHH
Confidence 4899999999995 69999999987653 122345677778877776665 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEE
Q 001505 729 IQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM 792 (1065)
Q Consensus 729 IaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl 792 (1065)
|+|-|++...|+.++||||||.||..-..+--+-.+.+.. .+--+|+|||+.+-.+.-.+|+-|
T Consensus 143 vaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 143 VALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999999765442222222222 367899999999988865555554
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.8e-26 Score=228.57 Aligned_cols=195 Identities=27% Similarity=0.375 Sum_probs=153.1
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------------eEEEEecCCC-CCC-----CcHHH
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSW-IQT-----GTIRE 677 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------------~iayv~Q~pw-if~-----gTIre 677 (1065)
+|+.++|+..||+|.+|||||||.+.|.|.++|++|+| .++| .|-.+.|+|- =|| |+|-|
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i-l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd 111 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI-LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD 111 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE-EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhc
Confidence 89999999999999999999999999999999999999 9987 3788999884 122 22222
Q ss_pred -----HHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001505 678 -----NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1065)
Q Consensus 678 -----NIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD 752 (1065)
|--+..+-..++..+.++..+|.+|-..+ .-..||-|||||+|||||+.-+|.|+|-||++.+||
T Consensus 112 ~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD 181 (267)
T COG4167 112 FPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181 (267)
T ss_pred chhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhcc
Confidence 22222222234666778888887775543 235799999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHh-hhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHHhhcchHH-HHHHHHhh
Q 001505 753 AHTGTHLFKQCLM-GLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSEL-VRQMKAHR 822 (1065)
Q Consensus 753 ~~t~~~if~~~i~-~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~-~~l~~~~~ 822 (1065)
+.+..++.+-.+. .-.-|-.-|+|+.++-.+++ +|+|+||++|+++|.|+..|+++++..+. .++++.|-
T Consensus 182 ~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 182 MSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESHF 254 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHHh
Confidence 9999988653331 11237799999999999987 99999999999999999999997443332 34555543
No 359
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1.6e-26 Score=281.64 Aligned_cols=208 Identities=25% Similarity=0.426 Sum_probs=172.6
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC---CCCcEEEECC-----
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR---ISGAAIKVHG----- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~---~~G~i~~v~g----- 659 (1065)
..++++|.+.+-+.... ..+..|+| +.++++||+.||.||+||||||||++|.|-.+. .+|+| .+||
T Consensus 24 ~~~~~~~~~~~~~~~~~---~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~i-lvNG~~~~~ 99 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSK---KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI-LLNGRPRDS 99 (613)
T ss_pred ceeEEEEEEEEecCCCC---ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEE-EECCccCch
Confidence 45778888776654311 23678999 999999999999999999999999999999874 78999 9999
Q ss_pred -----eEEEEecCCCC-CCCcHHHHHhcCcc------cc----hHHHHHHHHHhcchHHHHhhcCCCCccccC-CCCCCC
Q 001505 660 -----KKAYVPQSSWI-QTGTIRENILFGKD------MR----QSFYEEVLEGCALNQDIEMWADGDLSVVGE-RGINLS 722 (1065)
Q Consensus 660 -----~iayv~Q~pwi-f~gTIreNIlfG~~------~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe-~G~nLS 722 (1065)
..|||+|+..+ -+-||||++.|-.. .+ +++++++++.-+|. +. .||.||. .+..+|
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~------~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KC------ADTLIGNPGIRGLS 172 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hh------ccceecCCCCCccc
Confidence 37999999875 47899999987532 12 34666777776665 32 5788885 345899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcch--hhcCCEEEEEeCCEEEE
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF--LDAADLVLVMKDGKIEQ 799 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~--l~~aD~Ilvl~~G~I~e 799 (1065)
||||.|+++|--+..||.|++||||||+||++++.++++ .++++ .+|||||+.=||++. .+..|++++|.+|+++.
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 999999999999999999999999999999999998875 55554 459999999999975 68899999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
.|+.+++.+
T Consensus 252 ~G~~~~~~~ 260 (613)
T KOG0061|consen 252 SGSPRELLE 260 (613)
T ss_pred ecCHHHHHH
Confidence 999988764
No 360
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=3.4e-26 Score=247.20 Aligned_cols=177 Identities=26% Similarity=0.330 Sum_probs=118.3
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHH-HHHh--Cc------------------ccCCCCcEEEECC-eEEEEecC
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLL-SSIL--GE------------------IPRISGAAIKVHG-KKAYVPQS 667 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl-~~Ll--Ge------------------~~~~~G~i~~v~g-~iayv~Q~ 667 (1065)
.+++++ ||++++||+++|+|+||||||||+ ..+. |. +.|..+. +.| ..++..|+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 84 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS---IEGLSPAIAIDQ 84 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc---ccCCCceEEecC
Confidence 568888 999999999999999999999996 3322 11 0111111 112 13344444
Q ss_pred CC-CCC--CcH---HHHHhc-CcccchH---HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001505 668 SW-IQT--GTI---RENILF-GKDMRQS---FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1065)
Q Consensus 668 pw-if~--gTI---reNIlf-G~~~d~~---~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~ 737 (1065)
+. ..+ .++ .+...+ ..-+..+ +..+.++.++|.+ ........+||||||||++||||+++
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 85 KTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGY----------LTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCc----------ccccCccCcCCHHHHHHHHHHHHHHh
Confidence 32 111 122 222111 1001111 1112233222211 12456778999999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEE------eCCEEEEec
Q 001505 738 NS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM------KDGKIEQSG 801 (1065)
Q Consensus 738 ~a--dIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl------~~G~I~e~G 801 (1065)
+| +++||||||++||+++.+.+.+ .++.+. +++|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~-~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIE-TLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999887754 455543 578999999999999999999999 999999987
No 361
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=247.08 Aligned_cols=213 Identities=28% Similarity=0.414 Sum_probs=166.4
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-----CCCcEEEECC---
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-----ISGAAIKVHG--- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-----~~G~i~~v~g--- 659 (1065)
.-++++|.+.++.... ....+.++ ||+|++||.+|+||+||||||--..+++|+++. -+|+| ..+|
T Consensus 5 ~lL~v~nLsV~f~~~~----~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i-~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQEG----GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI-LFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecCC----cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee-EEcChhh
Confidence 3578888887776431 23567888 999999999999999999999999999999975 35777 7766
Q ss_pred --------------eEEEEecCCCC-CC--CcHHHH----HhcCccc----chHHHHHHHHHhcchH---HHHhhcCCCC
Q 001505 660 --------------KKAYVPQSSWI-QT--GTIREN----ILFGKDM----RQSFYEEVLEGCALNQ---DIEMWADGDL 711 (1065)
Q Consensus 660 --------------~iayv~Q~pwi-f~--gTIreN----IlfG~~~----d~~~y~~vl~ac~L~~---di~~Lp~Gd~ 711 (1065)
+|+.+.|+|-- .| -||..- |..-+.+ -+++..+.++..++.+ -++..|
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---- 155 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---- 155 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC----
Confidence 59999999963 22 244444 3333332 2344555555555542 344444
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CCcEEEEEcCCcchhhc-CCE
Q 001505 712 SVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQKTVLYTTHQLEFLDA-ADL 788 (1065)
Q Consensus 712 T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~kTvIlVTH~l~~l~~-aD~ 788 (1065)
..|||||||||-||-|+..+||++|=||||.|||..+..+|.+ .++.+- .+-.+++|||++..++. ||+
T Consensus 156 -------HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 156 -------HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred -------cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 5899999999999999999999999999999999999999864 565543 37899999999999865 999
Q ss_pred EEEEeCCEEEEecCHHHHHhhcchHHHHHH
Q 001505 789 VLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1065)
Q Consensus 789 Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~ 818 (1065)
|.||.+|+|+|.|+-+++.+++...|.+.+
T Consensus 228 V~VM~~G~ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 228 VYVMQHGEIVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred EEEEeccEEeecCcHHHHhhCCCChHHHHH
Confidence 999999999999999999985666676654
No 362
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.94 E-value=9.6e-27 Score=231.37 Aligned_cols=122 Identities=39% Similarity=0.611 Sum_probs=110.7
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------------eEEEEecCCCCCCCc-HHHH
Q 001505 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGT-IREN 678 (1065)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------------~iayv~Q~pwif~gT-IreN 678 (1065)
|+| |+++++|++++|+|++|||||||+++|.|.++|.+|+| .++| .++|++|+++++++. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI-LINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE-EETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 466 89999999999999999999999999999999999999 8887 489999999998775 9999
Q ss_pred HhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001505 679 ILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFS 749 (1065)
Q Consensus 679 IlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~S 749 (1065)
.++++++++++.+++.+ ..++.++.++..||||||||++||||++++|+++||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 45677888888888765 45678899999999999999999999999999999999996
No 363
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=5.2e-26 Score=248.79 Aligned_cols=180 Identities=27% Similarity=0.371 Sum_probs=127.5
Q ss_pred ccccC-CeEeeCCcEEEEECCCCCChHHHHHHHh--------Ccc--cCCCCcEEE---ECCeEEEEecCCC--------
Q 001505 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSIL--------GEI--PRISGAAIK---VHGKKAYVPQSSW-------- 669 (1065)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~Ll--------Ge~--~~~~G~i~~---v~g~iayv~Q~pw-------- 669 (1065)
..|+| +++||.|.+++|+|.||||||||++.++ +.. .|..++.+. --..+-+|.|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 46788 9999999999999999999999999764 111 122222100 0012344444442
Q ss_pred ---------------------------------------CCCCcHHHHHhcCcccc-hHHHHHHHHHhcchHHHHhhcCC
Q 001505 670 ---------------------------------------IQTGTIRENILFGKDMR-QSFYEEVLEGCALNQDIEMWADG 709 (1065)
Q Consensus 670 ---------------------------------------if~gTIreNIlfG~~~d-~~~y~~vl~ac~L~~di~~Lp~G 709 (1065)
+.+.|+.||+-|-..+. .++..++++.+ |
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~v-----------g 157 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDV-----------G 157 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHc-----------C
Confidence 23445555554432211 11111222222 3
Q ss_pred CCc-cccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh
Q 001505 710 DLS-VVGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD 784 (1065)
Q Consensus 710 d~T-~IGe~G~nLSGGQKQRIaLARAly~~---adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~ 784 (1065)
... ..++...+||||||||++||||+.++ |++|||||||++||++..+.+. +.++.+. ++.|+|+|||+++++.
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~tvIiitH~~~~i~ 236 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGNTVVVIEHNLDVIK 236 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHH
Confidence 333 36888899999999999999999996 7999999999999999987765 4566554 4789999999999999
Q ss_pred cCCEEEEE------eCCEEEEecCH
Q 001505 785 AADLVLVM------KDGKIEQSGKY 803 (1065)
Q Consensus 785 ~aD~Ilvl------~~G~I~e~Gt~ 803 (1065)
.||+|++| ++|+|+++|++
T Consensus 237 ~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 237 CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999 89999999973
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=5.6e-25 Score=261.13 Aligned_cols=200 Identities=28% Similarity=0.443 Sum_probs=167.3
Q ss_pred CCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEE
Q 001505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAY 663 (1065)
Q Consensus 587 ~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iay 663 (1065)
.+..++++|++++|++. .+++++ |+.|++|+++||+||+|+|||||++.|+|+..|.+|+| .+.. ++||
T Consensus 318 g~~vl~~~~~~~~y~~~-------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v-~~g~~v~igy 389 (530)
T COG0488 318 GKLVLEFENVSKGYDGG-------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV-KVGETVKIGY 389 (530)
T ss_pred CCeeEEEeccccccCCC-------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE-EeCCceEEEE
Confidence 35679999999999753 578888 99999999999999999999999999999999999998 7654 5999
Q ss_pred EecCC--CCCCCcHHHHHhcCcc-cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001505 664 VPQSS--WIQTGTIRENILFGKD-MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1065)
Q Consensus 664 v~Q~p--wif~gTIreNIlfG~~-~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ad 740 (1065)
.+|+- +.-+.|+-|++.=+.+ .++...+..+....+..+-. ......||||||.|+.||+.+.++|.
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pN 459 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPN 459 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCC
Confidence 99986 3456699999976553 23667777777777765432 33456899999999999999999999
Q ss_pred EEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEe-cCHHHHHh
Q 001505 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQS-GKYEDLIA 808 (1065)
Q Consensus 741 IlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~-Gt~~eL~~ 808 (1065)
+|||||||..||.++-+.+ ++++... +-|||+|||+-+|+.. |++|+.+++ ++.+. |+|+|..+
T Consensus 460 vLiLDEPTNhLDi~s~~aL-e~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 460 LLLLDEPTNHLDIESLEAL-EEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred EEEEcCCCccCCHHHHHHH-HHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 9999999999999996654 5555443 4599999999999976 899999999 77776 99998876
No 365
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=4.2e-26 Score=236.42 Aligned_cols=202 Identities=23% Similarity=0.406 Sum_probs=168.0
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC---------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--------- 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--------- 659 (1065)
.+++++++.++.+ ..+++| ||++++|+..+++|++|+||||.++.|||+++|++|+| .++|
T Consensus 2 ~L~ie~vtK~Fg~--------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I-~~~g~~~~~~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFGD--------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI-TWNGGPLSQEIKN 72 (300)
T ss_pred ceEEecchhccCc--------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceE-EEcCcchhhhhhh
Confidence 4788999988864 467888 99999999999999999999999999999999999999 9998
Q ss_pred eEEEEecCCCCC-CCcHHHHHhcCcc---cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 001505 660 KKAYVPQSSWIQ-TGTIRENILFGKD---MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV 735 (1065)
Q Consensus 660 ~iayv~Q~pwif-~gTIreNIlfG~~---~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl 735 (1065)
+|||.|.+--|+ +.|+.|-+.|-.. |+++..++= +...++.+.-+.. -..+-..||-|-+|+|++--|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGK--KTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccccc--ccchHHHhhhhhhHHHHHHHHH
Confidence 799999998875 6899999987532 444433322 2334454432111 2345668999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHHh
Q 001505 736 YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 736 y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
.++|+++|||||||+|||...+ +.++.|..+. +|+|+|+.||+++.+.. ||+++.|++|+.+-+|+-+++.+
T Consensus 146 iHePeLlILDEPFSGLDPVN~e-lLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVE-LLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred hcCCCEEEecCCccCCChhhHH-HHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 9999999999999999999865 5577776554 59999999999999865 99999999999999999999876
No 366
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.93 E-value=4.9e-22 Score=223.86 Aligned_cols=448 Identities=18% Similarity=0.207 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---ChHHH---HHHHHhhHHHHHHHHHHHHHHHHHH-HHHH
Q 001505 331 ESLTQRQWYFGANRIGIRVRSALTVLIYKRSMAIKFAGP---SSGII---INMINVDVERIGDFFLYIHRIWLLP-VQVF 403 (1065)
Q Consensus 331 ~~l~~~~~~~~~~r~~~~iR~~L~~~iy~K~L~ls~~~~---~~G~i---vnlms~D~~~i~~~~~~~~~~w~~p-l~i~ 403 (1065)
.++.+..-.|...+++..+|..|+...|++-+.-....+ ..|.+ =|-++.|+..+.+....+..-.+-| +.++
T Consensus 170 AtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~ 249 (728)
T KOG0064|consen 170 ASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLI 249 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344444445667789999999999999998775332111 22222 2458889988887766554444444 4555
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHhhHHHHHHhchHHHHHHH
Q 001505 404 LALVILYKNLGAAPAFAALFSTIFVMVSNTPLANRQE-RFHSMIME---AKDARIKATSETLKSMRVLKLLSWEQEFLKK 479 (1065)
Q Consensus 404 ~al~lL~~~lg~~~~l~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~---~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~ 479 (1065)
+..+.|....+ -....+.....+.+.+...+-|... ++.+-.++ .+..--..-+.+++|-..|-+|+-.+.-.++
T Consensus 250 l~s~~L~~s~~-s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~q 328 (728)
T KOG0064|consen 250 LISFTLLDSAT-SVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQ 328 (728)
T ss_pred HHHHHHHhhhc-cccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHH
Confidence 55555544322 1111111111111222222222221 22221111 1122223567889999999999977665555
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHhcCC--c-----CHHHHH-HHHHHHHHH
Q 001505 480 LLRLREIERDS----LKKYLYTCSAIAFL---FWASPTLV--SVITFGVCILLKTP--L-----TSGAVL-SALATFRIL 542 (1065)
Q Consensus 480 i~~~R~~E~~~----l~~~~~~~~~~~~~---~~~~p~~v--~~~~f~~~~~~~~~--L-----t~~~~f-t~l~l~~~l 542 (1065)
+++..+.-... .++.......-.++ .|....++ ++=.+..-...+++ + +-...| |.=-+.-..
T Consensus 329 l~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~sa 408 (728)
T KOG0064|consen 329 VDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSA 408 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHH
Confidence 55433322111 11111111111111 11111100 00000000011111 1 111222 222334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cC------CCCCC----C---------CCCCCC-----CCccEEEeeeE
Q 001505 543 QEPIYNLPELISMIAQTKVSLYRIQEFIKE-DN------QKKPI----T---------EPTSKA-----SDVAIDIEAGE 597 (1065)
Q Consensus 543 ~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~-~e------~~~~~----~---------~~~~~~-----~~~~I~~~n~s 597 (1065)
...+..+......+.|-..--.|+.+-++- ++ +...+ + ..+.+. ....|.++|+-
T Consensus 409 AdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIp 488 (728)
T KOG0064|consen 409 ADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIP 488 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCc
Confidence 556666777777788888888888755431 11 00000 0 000000 11236677766
Q ss_pred EEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC--CeEEEEecCCCCCCCc
Q 001505 598 YAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--GKKAYVPQSSWIQTGT 674 (1065)
Q Consensus 598 fsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~--g~iayv~Q~pwif~gT 674 (1065)
.--|+. ..+... +|+|++|..+.|.||+|||||||.+.|-|..|...|.. .+. .++-|.||.|+.=-||
T Consensus 489 vItP~~-------~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L-~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 489 VITPAG-------DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLL-SIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred eeccCc-------ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCee-ecCCCcceEeccCCCccCcCc
Confidence 555443 334444 99999999999999999999999999999999999976 553 4699999999999999
Q ss_pred HHHHHhcCcc--------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 001505 675 IRENILFGKD--------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1065)
Q Consensus 675 IreNIlfG~~--------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDD 746 (1065)
.||-|.+... +.++...++++...|+.- .+-..|.+. +-+----||||+|||++.||-.|++|.--+|||
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i-~qr~~g~da-~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHI-LQREGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHH-HHhccChhh-hccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 9999998642 445667788888887743 333444443 334445799999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEE
Q 001505 747 PFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1065)
Q Consensus 747 p~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl 792 (1065)
+||||-.+++..||+.+ ++ .|-+.|-||||++.-+.-...+-.
T Consensus 639 cTsAvsidvE~~i~~~a-k~--~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAA-KD--AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hhcccccchHHHHHHHH-Hh--cCceEEEeecCccHHHHHHHHHhc
Confidence 99999999999998753 33 367999999999987765555544
No 367
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=4.8e-25 Score=221.38 Aligned_cols=197 Identities=21% Similarity=0.353 Sum_probs=167.3
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------- 660 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~-------- 660 (1065)
.++++|++.++++- ..++| ||++.+||+-+|+||+|+||||++..|.|-.+|++|++ ..+|.
T Consensus 5 iL~~~~vsVsF~GF--------~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v-~f~g~~dl~~~~e 75 (249)
T COG4674 5 ILYLDGVSVSFGGF--------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV-LFDGDTDLTKLPE 75 (249)
T ss_pred eEEEeceEEEEcce--------eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceE-EEcCchhhccCCH
Confidence 57888999988754 57888 99999999999999999999999999999999999999 88882
Q ss_pred -------EEEEecCCCCC-CCcHHHHHhcCcc---------------cchHHHHHHHHHhcchHHHHhhcCCCCccccCC
Q 001505 661 -------KAYVPQSSWIQ-TGTIRENILFGKD---------------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGER 717 (1065)
Q Consensus 661 -------iayv~Q~pwif-~gTIreNIlfG~~---------------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~ 717 (1065)
|+--.|.|-+| +-||+||+-.... -++.+.++++...+|.+-- ..-
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-----------~~~ 144 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-----------DRL 144 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-----------hhh
Confidence 67779999998 5699999854321 1234677777777765321 222
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC-CHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCC
Q 001505 718 GINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV-DAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~~adIlLLDDp~SAL-D~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G 795 (1065)
..+||-|||||+-|+--+.++|++++||||.+++ |++|++. -+.++.+.+++++++|-|+++|+.. ||+|-||..|
T Consensus 145 A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~t--aeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G 222 (249)
T COG4674 145 AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT--AELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEG 222 (249)
T ss_pred hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHH--HHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecc
Confidence 4689999999999999999999999999999999 7777653 5677888889999999999999865 9999999999
Q ss_pred EEEEecCHHHHHh
Q 001505 796 KIEQSGKYEDLIA 808 (1065)
Q Consensus 796 ~I~e~Gt~~eL~~ 808 (1065)
++...|+.+|+.+
T Consensus 223 ~VL~EGsld~v~~ 235 (249)
T COG4674 223 SVLAEGSLDEVQN 235 (249)
T ss_pred ceeecccHHHhhc
Confidence 9999999999875
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=2e-24 Score=228.31 Aligned_cols=150 Identities=21% Similarity=0.204 Sum_probs=119.1
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCC---------cEEEEC----------CeEEEEecCCCCCCCcHHH
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG---------AAIKVH----------GKKAYVPQSSWIQTGTIRE 677 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G---------~i~~v~----------g~iayv~Q~pwif~gTIre 677 (1065)
++++++| +++|+||+|||||||+++|.|.+++..| .+ ..+ .+++||+|+|..+
T Consensus 17 ~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~vfq~~~~~------ 88 (197)
T cd03278 17 TIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDV-IFAGSETRKPANFAEVTLTFDNSDGR------ 88 (197)
T ss_pred eeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHH-hccCCCCCCCCceEEEEEEEEcCCCc------
Confidence 7889999 9999999999999999999998866533 23 222 3689999999988
Q ss_pred HHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCH
Q 001505 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDA 753 (1065)
Q Consensus 678 NIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly----~~adIlLLDDp~SALD~ 753 (1065)
|+.. .+++.+++++. ++- .......||||||||++||||+. ++|+++||||||++||+
T Consensus 89 ---~~~~-~~~~~~~~l~~----------~~~----~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~ 150 (197)
T cd03278 89 ---YSII-SQGDVSEIIEA----------PGK----KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred ---eeEE-ehhhHHHHHhC----------CCc----cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCH
Confidence 4322 23445555554 111 23445689999999999999985 67799999999999999
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEe
Q 001505 754 HTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1065)
Q Consensus 754 ~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~ 793 (1065)
+....+. +.++.+.++.|+|+|||+++.+..||+++.|.
T Consensus 151 ~~~~~l~-~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 151 ANVERFA-RLLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred HHHHHHH-HHHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 9987764 46776666899999999999999999999995
No 369
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.7e-24 Score=211.69 Aligned_cols=214 Identities=24% Similarity=0.402 Sum_probs=161.7
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC---C------
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH---G------ 659 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~---g------ 659 (1065)
-+++++++..|.+. .--+| +|++.|||..+|||++||||||||+||.+-+.|++|+| ..+ |
T Consensus 6 LL~V~~lsk~Yg~~--------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v-~Y~~r~~~~~dl~ 76 (258)
T COG4107 6 LLSVSGLSKLYGPG--------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV-TYRMRDGQPRDLY 76 (258)
T ss_pred ceeehhhhhhhCCC--------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeE-EEEcCCCCchhHh
Confidence 46778888888754 34556 99999999999999999999999999999999999998 442 1
Q ss_pred -------------eEEEEecCCC--C-CCCcHHHHHhcCc-cc--chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -------------KKAYVPQSSW--I-QTGTIRENILFGK-DM--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -------------~iayv~Q~pw--i-f~gTIreNIlfG~-~~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
.=++|.|+|- + ..-|---|| |+ .+ -...|-++ ++.+. +.++.. +=|.+.|.+....
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni--GERlma~G~RHYG~i-R~~a~-~WL~~V-EI~~~RiDD~Prt 151 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI--GERLMAIGARHYGNI-RAEAQ-DWLEEV-EIDLDRIDDLPRT 151 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCcc--chhHHhhhhhhhhhH-HHHHH-HHHHhc-ccCcccccCcccc
Confidence 1389999984 1 111112222 11 01 01123322 22221 223322 2255678888999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCCcchhhc-CCEEEEEeCCEE
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I 797 (1065)
.|||.+||++|||-+...|+++.+||||-+||..+...+. ++++++.+ +-.+|+|||++....- +|+.+||++|++
T Consensus 152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLL-DllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~v 230 (258)
T COG4107 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQV 230 (258)
T ss_pred cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHH-HHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCE
Confidence 9999999999999999999999999999999999988875 47788765 5799999999998764 999999999999
Q ss_pred EEecCHHHHHhhcchHHHHHH
Q 001505 798 EQSGKYEDLIADQNSELVRQM 818 (1065)
Q Consensus 798 ~e~Gt~~eL~~~~~~~~~~l~ 818 (1065)
+|+|--+..+.++...|.+++
T Consensus 231 ve~GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 231 VESGLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred eccccccccccCCCCchHHHH
Confidence 999988888875666666654
No 370
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-22 Score=210.83 Aligned_cols=199 Identities=24% Similarity=0.296 Sum_probs=158.8
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCc--ccCCCCcEEEECCe-------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGK------- 660 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe--~~~~~G~i~~v~g~------- 660 (1065)
++++|++.+-++. +.+|++ ||+|++||..||.||+|||||||.++|+|. |++++|+| ..+|.
T Consensus 4 L~I~dLhv~v~~~-------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I-~~~GedI~~l~~ 75 (251)
T COG0396 4 LEIKDLHVEVEGK-------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI-LFDGEDILELSP 75 (251)
T ss_pred eEEeeeEEEecCc-------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE-EECCcccccCCH
Confidence 6788888776532 479999 999999999999999999999999999996 68999999 99983
Q ss_pred -------EEEEecCCCCCCC-cHHHHHhcCcc----------cchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCC
Q 001505 661 -------KAYVPQSSWIQTG-TIRENILFGKD----------MRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLS 722 (1065)
Q Consensus 661 -------iayv~Q~pwif~g-TIreNIlfG~~----------~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLS 722 (1065)
+....|.|-=+.| |+++=+.-+.. -..++.++.++...++++.. +..++ ..+|
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN---~GFS 146 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVN---EGFS 146 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccC---CCcC
Confidence 6788999986665 77776653211 11234444555555555321 11222 3689
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcC--CEEEEEeCCEEEE
Q 001505 723 GGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAA--DLVLVMKDGKIEQ 799 (1065)
Q Consensus 723 GGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~a--D~Ilvl~~G~I~e 799 (1065)
||+|.|.-|+-++.-+|++.|||||=|+||...-+ ++.+.++.+. +++++++|||.-..+.+. |++.||-||+|+.
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk-~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK-IVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHH-HHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe
Confidence 99999999999999999999999999999998865 4467777665 489999999999998876 9999999999999
Q ss_pred ecCHHHHHh
Q 001505 800 SGKYEDLIA 808 (1065)
Q Consensus 800 ~Gt~~eL~~ 808 (1065)
+|.+ ||..
T Consensus 226 sG~~-el~~ 233 (251)
T COG0396 226 SGDP-ELAE 233 (251)
T ss_pred cCCH-HHHH
Confidence 9999 7765
No 371
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8e-24 Score=212.52 Aligned_cols=163 Identities=28% Similarity=0.382 Sum_probs=135.5
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe------------EEEEecCCCC-CCCcHH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------KAYVPQSSWI-QTGTIR 676 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------------iayv~Q~pwi-f~gTIr 676 (1065)
...+.+ +|++.+||.+-|.||+||||||||+.|.|.++|.+|+| ..+|. .-|...+|=| ..-|+.
T Consensus 15 ~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v-~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV-YWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE-EecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 456777 99999999999999999999999999999999999999 88752 3455555555 456999
Q ss_pred HHHhcCccc----chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001505 677 ENILFGKDM----RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVD 752 (1065)
Q Consensus 677 eNIlfG~~~----d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD 752 (1065)
||+.|-.++ +++...++++..+|. +++.+|.+ +||-|||.|+||||-..+.+|+.|||||++|+|
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~dlp~~----------~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVG----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCcc-cccccchh----------hcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 999997763 457889999999986 55666654 799999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhh-cCCcEEEEEcCCcchhhcC
Q 001505 753 AHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLDAA 786 (1065)
Q Consensus 753 ~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~l~~a 786 (1065)
.+.. .+|...+... -+|--||+.||+.--++.+
T Consensus 163 k~g~-a~l~~l~~~H~~~GGiVllttHq~l~~~~a 196 (209)
T COG4133 163 KEGV-ALLTALMAAHAAQGGIVLLTTHQPLPIASA 196 (209)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEecCCccCCCcc
Confidence 9975 4667776544 4688999999997655443
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=2.3e-23 Score=227.73 Aligned_cols=169 Identities=23% Similarity=0.271 Sum_probs=114.9
Q ss_pred CcEEEEECCCCCChHHHHHHHhCcc----------------cCCCCcEEEECCeEEEEecCCCCC------CCcHH----
Q 001505 623 GSKVAVCGSVGSGKSSLLSSILGEI----------------PRISGAAIKVHGKKAYVPQSSWIQ------TGTIR---- 676 (1065)
Q Consensus 623 G~~vaIvG~~GSGKSTLl~~LlGe~----------------~~~~G~i~~v~g~iayv~Q~pwif------~gTIr---- 676 (1065)
|++++|+||+|||||||+++|.+.+ .+.+|.. ...+.+.++.|++.-+ +-+++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig 101 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPS-VMSAYVEIIFDNSDNRFPIDKEEVRLRRTIG 101 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCC-CceEEEEEEEEcCCCccCCCCCEEEEEEEEE
Confidence 7899999999999999999998443 2223311 1112233333443110 01111
Q ss_pred ---HHHhc-CcccchHHHHHHHHHhcchHHH--HhhcCCCCc-------cccCCCCCCCHHHHHHHHHHHHHc----cCC
Q 001505 677 ---ENILF-GKDMRQSFYEEVLEGCALNQDI--EMWADGDLS-------VVGERGINLSGGQKQRIQLARAVY----SNS 739 (1065)
Q Consensus 677 ---eNIlf-G~~~d~~~y~~vl~ac~L~~di--~~Lp~Gd~T-------~IGe~G~nLSGGQKQRIaLARAly----~~a 739 (1065)
+|+.+ ++.+..+.+...++.+++.++- ...|+|..+ ..++++.+||||||||++||||++ ++|
T Consensus 102 ~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~ 181 (243)
T cd03272 102 LKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPA 181 (243)
T ss_pred CCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCC
Confidence 33322 2234455666666666654321 112333322 246788999999999999999996 468
Q ss_pred CEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEe
Q 001505 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1065)
Q Consensus 740 dIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~ 793 (1065)
+++||||||++||+++.+.+.+ .+..+.+++|+|++||+.+....||+|++|+
T Consensus 182 ~illlDEp~~~ld~~~~~~~~~-~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 182 PFYLFDEIDAALDAQYRTAVAN-MIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred CEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 9999999999999999887754 5666666889999999998889999999996
No 373
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.89 E-value=6.3e-23 Score=218.20 Aligned_cols=153 Identities=24% Similarity=0.335 Sum_probs=121.9
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHH----hCcccCCCCcEEEE----------CCeEEEEecCC-----CCC-CCcHH
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSI----LGEIPRISGAAIKV----------HGKKAYVPQSS-----WIQ-TGTIR 676 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~L----lGe~~~~~G~i~~v----------~g~iayv~Q~p-----wif-~gTIr 676 (1065)
++++.+| +++|+||+|||||||+.+| .|..++..|.+ .. ...++++.|++ -+. +-|+.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~-~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGG-AHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccc-cchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 4677788 9999999999999999999 49998888754 21 12689999988 222 23899
Q ss_pred HHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHH------HHHHHHHccCCCEEEEeCCCCC
Q 001505 677 ENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQR------IQLARAVYSNSDVYIFDDPFSA 750 (1065)
Q Consensus 677 eNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQR------IaLARAly~~adIlLLDDp~SA 750 (1065)
||+.++. +++.++.+ .+...+|||||||| ++||||+..+|+++|||||+++
T Consensus 95 ~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~ 151 (204)
T cd03240 95 ENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN 151 (204)
T ss_pred hceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc
Confidence 9998763 22222222 55667999999996 7999999999999999999999
Q ss_pred CCHhHHH-HHHHHHHhhhcC--CcEEEEEcCCcchhhcCCEEEEEe-CC
Q 001505 751 VDAHTGT-HLFKQCLMGLLS--QKTVLYTTHQLEFLDAADLVLVMK-DG 795 (1065)
Q Consensus 751 LD~~t~~-~if~~~i~~ll~--~kTvIlVTH~l~~l~~aD~Ilvl~-~G 795 (1065)
||+++.+ .+. +.+..+.+ ++|+|+|||+.+.+..||+|++|+ +|
T Consensus 152 LD~~~~~~~l~-~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 152 LDEENIEESLA-EIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred cCHHHHHHHHH-HHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 9999977 654 45666554 689999999999999999999996 44
No 374
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=2.5e-23 Score=219.23 Aligned_cols=186 Identities=27% Similarity=0.352 Sum_probs=140.8
Q ss_pred ccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe------------EEEE----ecCCCCCCCc
Q 001505 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK------------KAYV----PQSSWIQTGT 674 (1065)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~------------iayv----~Q~pwif~gT 674 (1065)
+..+| ||+||+|+.++.+|++|+||||+|+.|.|...|++|.| .|+|. ++|| .|-=|=.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v-~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp-- 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV-RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP-- 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE-EecCcCcchhHHHHHHHHHHHhhhhheeeeech--
Confidence 45667 99999999999999999999999999999999999999 99984 3333 12223222
Q ss_pred HHHHHhcCc---ccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001505 675 IRENILFGK---DMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV 751 (1065)
Q Consensus 675 IreNIlfG~---~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SAL 751 (1065)
+.|-+.--+ +..+++|++-+ +...+.| +.+..+-.+-..||=|||-|..||-||+++|+|++|||||=+|
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~-----~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERL-----DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHH-----HHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 222221111 11223333222 1222333 3344455667899999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhhh--cCCcEEEEEcCCcchhh-cCCEEEEEeCCEEEEecCHHHHHh
Q 001505 752 DAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLD-AADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 752 D~~t~~~if~~~i~~l--l~~kTvIlVTH~l~~l~-~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
|..+...| .+.++.. -++.||++.||.++-+. -||+|++|+.|+++..|+.++|.+
T Consensus 188 DV~aq~~i-r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 188 DVNAQANI-REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred chhHHHHH-HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 99997776 5566543 35889999999998875 599999999999999999999987
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.88 E-value=9.9e-23 Score=218.39 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=114.8
Q ss_pred CCcEEEEECCCCCChHHHHHHHhCc-ccCCCCcEEEE------------CCeEEEEecCCCCCCCcHHHHHhcCcccchH
Q 001505 622 KGSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKV------------HGKKAYVPQSSWIQTGTIRENILFGKDMRQS 688 (1065)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLl~~LlGe-~~~~~G~i~~v------------~g~iayv~Q~pwif~gTIreNIlfG~~~d~~ 688 (1065)
+|++++|+||+|||||||+++|.+. +.+..+.. .. ...++++.|.+.-.-. ++.++ ..+.+
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~----~~r~~-gl~~~ 100 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYG-RQENLRSVFAPGEDTAEVSFTFQLGGKKYR----VERSR-GLDYD 100 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccc-cchhHHHHhcCCCccEEEEEEEEECCeEEE----EEEec-CCCHH
Confidence 4889999999999999999999953 33333333 21 1258888888743222 22222 22333
Q ss_pred HHHHHHHHhcchHHHHhhcCC-CCccccCCCCCCCHHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHhHHH
Q 001505 689 FYEEVLEGCALNQDIEMWADG-DLSVVGERGINLSGGQKQRIQLARAVYS----------NSDVYIFDDPFSAVDAHTGT 757 (1065)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~G-d~T~IGe~G~nLSGGQKQRIaLARAly~----------~adIlLLDDp~SALD~~t~~ 757 (1065)
.+.+.+ .++.| .++.+...+.+||||||||++||||+.. +|+++||||||++||+.+.+
T Consensus 101 ~~~~~~----------~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~ 170 (213)
T cd03279 101 QFTRIV----------LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALE 170 (213)
T ss_pred HHHHhh----------hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHH
Confidence 332221 12233 3455677888999999999999999974 67999999999999999987
Q ss_pred HHHHHHHhhhcC-CcEEEEEcCCcchhhc-CCEEEEEeCCEE
Q 001505 758 HLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKI 797 (1065)
Q Consensus 758 ~if~~~i~~ll~-~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I 797 (1065)
.+ .+.++.+.+ ++|+|+|||+++.+.. +|+|++|++|.+
T Consensus 171 ~~-~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 171 AV-ATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HH-HHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 66 556766654 7899999999998755 799999998854
No 376
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=8.2e-23 Score=224.00 Aligned_cols=169 Identities=21% Similarity=0.219 Sum_probs=129.7
Q ss_pred EEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC--------C------------eEEEEecCC--CCCCCcHHHHHh--
Q 001505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--------G------------KKAYVPQSS--WIQTGTIRENIL-- 680 (1065)
Q Consensus 625 ~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~--------g------------~iayv~Q~p--wif~gTIreNIl-- 680 (1065)
+++|+||+|||||||+.+|.+.+.+..|++ ... | .+.|..|++ .++..+++++-.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~-r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHL-RSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccc-cccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 999999999999999999998876655554 321 1 133444432 233444444321
Q ss_pred --cCcccchHHHHHHHHHhcchHHHHh--hcCCCCccccCCC---------CCCCHHHHHHHHHHHHHcc----CCCEEE
Q 001505 681 --FGKDMRQSFYEEVLEGCALNQDIEM--WADGDLSVVGERG---------INLSGGQKQRIQLARAVYS----NSDVYI 743 (1065)
Q Consensus 681 --fG~~~d~~~y~~vl~ac~L~~di~~--Lp~Gd~T~IGe~G---------~nLSGGQKQRIaLARAly~----~adIlL 743 (1065)
-|++.+++.|++.++.|++..|... .++|+-+.+.+.. .+||||||||++||||+.. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1456778899999999999766433 4688877776654 7899999999999999975 499999
Q ss_pred EeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhcCCEEEEEe-CC
Q 001505 744 FDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDAADLVLVMK-DG 795 (1065)
Q Consensus 744 LDDp~SALD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~l~~aD~Ilvl~-~G 795 (1065)
|||||++||+....++. +.+..+.+ +.|+|+|||+.+.+..||+|++|. |+
T Consensus 183 lDEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 183 LDEVDAALDNTNVGKVA-SYIREQAGPNFQFIVISLKEEFFSKADALVGVYRDQ 235 (247)
T ss_pred EecccccCCHHHHHHHH-HHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEecC
Confidence 99999999999987764 46766654 789999999999999999999995 44
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=2.3e-22 Score=221.00 Aligned_cols=171 Identities=20% Similarity=0.254 Sum_probs=128.4
Q ss_pred CcEEEEECCCCCChHHHHHHHhCcccCCC-CcEEEEC---------------C-eEEEEecCCCC----------CCCcH
Q 001505 623 GSKVAVCGSVGSGKSSLLSSILGEIPRIS-GAAIKVH---------------G-KKAYVPQSSWI----------QTGTI 675 (1065)
Q Consensus 623 G~~vaIvG~~GSGKSTLl~~LlGe~~~~~-G~i~~v~---------------g-~iayv~Q~pwi----------f~gTI 675 (1065)
..+++|+||+|||||||+.+|.+.+.+.. |++ ... + ++.++.|+|-. ..-||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~-r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTV-RASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccc-cccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 55999999999999999999999887653 343 321 1 68899998621 25688
Q ss_pred HHHHhcCcc---------cchHHHHHHHHHhcchHH----------HHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 001505 676 RENILFGKD---------MRQSFYEEVLEGCALNQD----------IEMWADGDLSVVGERGINLSGGQKQRIQLARAVY 736 (1065)
Q Consensus 676 reNIlfG~~---------~d~~~y~~vl~ac~L~~d----------i~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly 736 (1065)
++||..+.. ...+++.+.++.+++..| ++.+-+.. .....+..+||||||||++||||++
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~-~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG-GVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH-HhhcccccccCHHHHHHHHHHHHHH
Confidence 888866532 123566677777777521 11111110 2334567899999999999999997
Q ss_pred ----cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEe--CCE
Q 001505 737 ----SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK--DGK 796 (1065)
Q Consensus 737 ----~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~--~G~ 796 (1065)
++|+++||||||++||+...+++.+ .++.+.++.|+|+|||+.+.+..||+|+-+. ||.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 6889999999999999999887754 5666667899999999999999999999875 654
No 378
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=5.9e-22 Score=248.69 Aligned_cols=94 Identities=29% Similarity=0.539 Sum_probs=86.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEE
Q 001505 714 VGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLV 789 (1065)
Q Consensus 714 IGe~G~nLSGGQKQRIaLARAly~~a---dIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~I 789 (1065)
.+.+..+||||||||++||||+.++| ++|||||||++||++....+. +.++.+. +++|+|+|||+++.+..||+|
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 68888999999999999999999999 999999999999999987765 4666654 479999999999999999999
Q ss_pred EEE------eCCEEEEecCHHHHHh
Q 001505 790 LVM------KDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 790 lvl------~~G~I~e~Gt~~eL~~ 808 (1065)
++| ++|+|++.|+++|+.+
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999 7999999999999987
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=2.5e-22 Score=228.32 Aligned_cols=200 Identities=21% Similarity=0.324 Sum_probs=165.8
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEE-ECCeEEEEe
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIK-VHGKKAYVP 665 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~-v~g~iayv~ 665 (1065)
.+.|.++|++|.|+++ .-++++ ||-|.+++.+|+|||+|+||||||+++.|++.|..|.|.. .+.++++-.
T Consensus 387 ~pvi~~~nv~F~y~~~-------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~ 459 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDN-------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYN 459 (614)
T ss_pred CCeEEEeccccCCCCc-------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhh
Confidence 3579999999999875 256777 9999999999999999999999999999999999998822 233577777
Q ss_pred cCC---CCCCCcHHHHHh--cCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001505 666 QSS---WIQTGTIRENIL--FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1065)
Q Consensus 666 Q~p---wif~gTIreNIl--fG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ad 740 (1065)
|.- --...|.-||+. |...-+.+..+.++..|+|..|...-|- .+||+|||.||..||..++.|.
T Consensus 460 Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred hhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCc
Confidence 753 345678888885 5544567889999999999988766554 5899999999999999999999
Q ss_pred EEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE-ecCHHHHH
Q 001505 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ-SGKYEDLI 807 (1065)
Q Consensus 741 IlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e-~Gt~~eL~ 807 (1065)
|++|||||++||..+-.. ..++|+.. .-+||+|+|..-++.+ |++|.+.+||.+.. .|.|..-.
T Consensus 530 lLlLDEPtnhLDi~tid~-laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDA-LAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred EEEecCCCcCCCchhHHH-HHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 999999999999999654 46777765 3589999999999976 89999999999865 56665443
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.85 E-value=8.4e-21 Score=247.09 Aligned_cols=99 Identities=29% Similarity=0.438 Sum_probs=86.9
Q ss_pred CCCcc-ccCCCCCCCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh
Q 001505 709 GDLSV-VGERGINLSGGQKQRIQLARAVY---SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL 783 (1065)
Q Consensus 709 Gd~T~-IGe~G~nLSGGQKQRIaLARAly---~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l 783 (1065)
|.... .+....+||||||||++||||+. ++|++|||||||++||++..+.++ +.++.+. +++|+|+|||+++.+
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TVIiIsHdl~~i 875 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTVVIIEHNMHVV 875 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHH
Confidence 44443 57888899999999999999998 699999999999999999988775 4566554 488999999999999
Q ss_pred hcCCEEEEEe------CCEEEEecCHHHHHh
Q 001505 784 DAADLVLVMK------DGKIEQSGKYEDLIA 808 (1065)
Q Consensus 784 ~~aD~Ilvl~------~G~I~e~Gt~~eL~~ 808 (1065)
..||+|++|+ +|+++..|+++++..
T Consensus 876 ~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 876 KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999996 799999999999976
No 381
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.8e-21 Score=191.46 Aligned_cols=190 Identities=21% Similarity=0.279 Sum_probs=134.1
Q ss_pred EEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEEC--C--------
Q 001505 591 IDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVH--G-------- 659 (1065)
Q Consensus 591 I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~--g-------- 659 (1065)
+.++|++.++.-..+ ..-.-|+++| +|+++.||++++-|||||||||||++|-|-|.|++|+| .+. |
T Consensus 5 l~v~~~~KtFtlH~q-~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I-~v~H~g~~vdl~~a 82 (235)
T COG4778 5 LNVSNVSKTFTLHQQ-GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI-LVRHEGEWVDLVTA 82 (235)
T ss_pred eeeecchhheEeeec-CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE-EEEeCcchhhhhcc
Confidence 556666555432100 0012478888 99999999999999999999999999999999999998 663 2
Q ss_pred -----------eEEEEecCC-CCCCCc----HHHHH-hcCcccch--HHHHHHHHHhcchHHHHhhcCCCCccccCCCCC
Q 001505 660 -----------KKAYVPQSS-WIQTGT----IRENI-LFGKDMRQ--SFYEEVLEGCALNQDIEMWADGDLSVVGERGIN 720 (1065)
Q Consensus 660 -----------~iayv~Q~p-wif~gT----IreNI-lfG~~~d~--~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~n 720 (1065)
+|+||+|-- .|..-+ +.|-. .-|-+-+. ++-...+..-.+-+-+=.|| ..+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaT 152 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PAT 152 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Ccc
Confidence 489999942 122222 22222 23433222 22223333334444444444 358
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcchhh-cCCEEEEEe
Q 001505 721 LSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEFLD-AADLVLVMK 793 (1065)
Q Consensus 721 LSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~l~-~aD~Ilvl~ 793 (1065)
.|||++||+.|||.+.-|-+|+||||||++||+.....+ -+.|.+. .+|...|=|=|+-+.=. -||+++-|.
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vV-veli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV-VELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHH-HHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999987655 4567554 46889999999877644 489998875
No 382
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.85 E-value=3.7e-21 Score=244.36 Aligned_cols=200 Identities=23% Similarity=0.350 Sum_probs=167.1
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--------
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------- 659 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------- 659 (1065)
.++..+|.+..|+.. . . ..++ ++.|++||..++.|++|+||||.++.|.|+.+|++|++ .++|
T Consensus 563 ~~~~~~~L~k~y~~~-----~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a-~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK-----D-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEA-LIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecch-----h-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceE-EEecCccccccc
Confidence 467888999999865 2 2 6777 99999999999999999999999999999999999999 7765
Q ss_pred ------eEEEEecCCCCC-CCcHHHHHhcCc---ccc----hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 660 ------KKAYVPQSSWIQ-TGTIRENILFGK---DMR----QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 660 ------~iayv~Q~pwif-~gTIreNIlfG~---~~d----~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
.+|||||..-+. .-|.||.+.+-. .+. ++..++.+++.+|.+.... . -.++||||
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~------~-----~~~ySgG~ 703 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK------Q-----VRTYSGGN 703 (885)
T ss_pred hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc------c-----hhhCCCcc
Confidence 389999986654 679999996532 111 2335666666666654322 1 46899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCH
Q 001505 726 KQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 726 KQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~ 803 (1065)
|.|++.|-|+..+|++++||||++++||+..+++.+ .|..+.+ +|.+|+.||.++..+. |||+.+|.+|++...|+.
T Consensus 704 kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~-ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 704 KRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD-IIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred hhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecCh
Confidence 999999999999999999999999999999988875 6777666 4599999999999876 999999999999999999
Q ss_pred HHHHh
Q 001505 804 EDLIA 808 (1065)
Q Consensus 804 ~eL~~ 808 (1065)
++|..
T Consensus 783 q~LKs 787 (885)
T KOG0059|consen 783 QELKS 787 (885)
T ss_pred HHHHh
Confidence 99986
No 383
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.85 E-value=1e-17 Score=182.55 Aligned_cols=267 Identities=18% Similarity=0.267 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 278 ALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLI 357 (1065)
Q Consensus 278 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~~i 357 (1065)
++..++.++..+...+.|++++.+++.+.+++.. .....+.++..+++..++.......+.+...+.+.+++..+...+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888899999999999997665432 122144444444444455555556666667899999999999999
Q ss_pred HHHHhccccC---CCChHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001505 358 YKRSMAIKFA---GPSSGIIINMINVDVERIGDFFLYIHRIW-LLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVSNT 433 (1065)
Q Consensus 358 y~K~L~ls~~---~~~~G~ivnlms~D~~~i~~~~~~~~~~w-~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~~~ 433 (1065)
++|.++.+.. ..++|+++|++++|++++++.+......+ ...+.++.++++++ ..+|..+++.++..++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 81 FEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLF-FISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhccc-ccccccccccchhhhhhHhhhh
Confidence 9999998765 34899999999999999999876544333 33344444444333 3454566666667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-H
Q 001505 434 PLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLRLREIERDSLKKYLYTCSAIAFLFW-ASPT-L 511 (1065)
Q Consensus 434 ~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~-~~p~-~ 511 (1065)
.+.++.++..++..++.+++.+.++|.++|+|+||.|++|+.+.+++++.+++..+...+............. .... .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999988777655544444333333222222 2222 3
Q ss_pred HHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 001505 512 VSVITFGVCI-LLKTPLTSGAVLSALATFRILQEPI 546 (1065)
Q Consensus 512 v~~~~f~~~~-~~~~~Lt~~~~ft~l~l~~~l~~pl 546 (1065)
+.++.++.+. ..++.+++|.+++++.++..+..|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 4556678888 8889999999999999999999986
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=7.5e-22 Score=211.03 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=115.5
Q ss_pred cEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCC-CcHHHHHhcCcccc-hHHH---HHHHHH--
Q 001505 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQT-GTIRENILFGKDMR-QSFY---EEVLEG-- 696 (1065)
Q Consensus 624 ~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~-gTIreNIlfG~~~d-~~~y---~~vl~a-- 696 (1065)
++++|+||+||||||++++|...+-...... -.++++|++|+....+ .|.++++.+-..+. .+.. .-..+.
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 103 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM--RQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNR 103 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccCHHHh--hhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCc
Confidence 7999999999999999999972211111111 1246899999887654 47888776543321 0100 000000
Q ss_pred ----hcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc
Q 001505 697 ----CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1065)
Q Consensus 697 ----c~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~----~adIlLLDDp~SALD~~t~~~if~~~i~~ll 768 (1065)
.+-..++..+|++.++.+ ..||||||||++||||++. +|++++|||||++||+++.+.+ .+.++.+.
T Consensus 104 ~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l-~~~l~~~~ 178 (212)
T cd03274 104 FLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV-ANYIKERT 178 (212)
T ss_pred eEEcCCcEEEeeccccccccch----hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH-HHHHHHHc
Confidence 011113445677776654 4799999999999999963 5899999999999999997755 56677776
Q ss_pred CCcEEEEEcCCcchhhcCCEEEEEe
Q 001505 769 SQKTVLYTTHQLEFLDAADLVLVMK 793 (1065)
Q Consensus 769 ~~kTvIlVTH~l~~l~~aD~Ilvl~ 793 (1065)
++.|+|+|||+.+....||+|++|.
T Consensus 179 ~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 179 KNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred CCCEEEEEECcHHHHHhCCEEEEEE
Confidence 7789999999988888999999995
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=3.5e-20 Score=232.37 Aligned_cols=92 Identities=30% Similarity=0.554 Sum_probs=83.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEE
Q 001505 714 VGERGINLSGGQKQRIQLARAVYS---NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLV 789 (1065)
Q Consensus 714 IGe~G~nLSGGQKQRIaLARAly~---~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~I 789 (1065)
.+....+||||||||++||||+.+ +|++|||||||++||++..+.+. +.++.+. +++|+|+|||+++.+..||+|
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIvi~H~~~~i~~aD~i 900 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVVIEHNLDVIKTADYI 900 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 688889999999999999999997 59999999999999999987764 4566654 489999999999999999999
Q ss_pred EEE------eCCEEEEecCHHHH
Q 001505 790 LVM------KDGKIEQSGKYEDL 806 (1065)
Q Consensus 790 lvl------~~G~I~e~Gt~~eL 806 (1065)
++| ++|+|++.|+++++
T Consensus 901 i~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 901 IDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEecCCccCCCCEEEEeCCHHHh
Confidence 999 79999999999886
No 386
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.83 E-value=1.4e-20 Score=195.67 Aligned_cols=143 Identities=21% Similarity=0.246 Sum_probs=101.9
Q ss_pred cEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeE--EEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchH
Q 001505 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK--AYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ 701 (1065)
Q Consensus 624 ~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~i--ayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~ 701 (1065)
.+.+|+||+|||||+++.+|.=-+--.+-.. ..+... .+-...++-.+++|+ |.| +.
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~--~~f------------------~~ 81 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKL-RRGSLLFLAGGGVKAGINSASVE--ITF------------------DK 81 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccc-cCcchhhhcccccCCCCceEEEE--EEE------------------EC
Confidence 3999999999999999999843221111000 000000 011112222222222 112 22
Q ss_pred HHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEE
Q 001505 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYT 776 (1065)
Q Consensus 702 di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl----y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~kTvIlV 776 (1065)
++..+|+|+.|+| ||||||||++||||+ +++|+++++|||++++|++....+++ .+..+.+ ++|+|++
T Consensus 82 ~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~~g~tiIii 154 (178)
T cd03239 82 SYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAKHTSQFIVI 154 (178)
T ss_pred ceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEE
Confidence 3778999999999 999999999999998 47999999999999999999887754 5665544 5899999
Q ss_pred cCCcchhhcCCEEEEEeC
Q 001505 777 THQLEFLDAADLVLVMKD 794 (1065)
Q Consensus 777 TH~l~~l~~aD~Ilvl~~ 794 (1065)
||+.+.+..+|+++.++.
T Consensus 155 SH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 155 TLKKEMFENADKLIGVLF 172 (178)
T ss_pred ECCHHHHhhCCeEEEEEE
Confidence 999999999999999974
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.82 E-value=1e-19 Score=207.24 Aligned_cols=204 Identities=21% Similarity=0.391 Sum_probs=140.9
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecC
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS 667 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~ 667 (1065)
..+.++|.++++.+ ...++| .+++.+|+.++++|++||||||+|++|.|--.|..-.+ . +...+|+
T Consensus 74 ~dvk~~sls~s~~g--------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-d----~y~ls~e 140 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG--------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-D----FYLLSRE 140 (614)
T ss_pred ccceeeeeeeccCC--------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-c----hhhhccc
Confidence 46899999999875 467888 99999999999999999999999999999887776655 2 2233332
Q ss_pred CCCCCCcHHHHHhcCcccchHHHH----HHHHHhc----------------chHH-----H-Hhhc-CCCC-ccccCCCC
Q 001505 668 SWIQTGTIRENILFGKDMRQSFYE----EVLEGCA----------------LNQD-----I-EMWA-DGDL-SVVGERGI 719 (1065)
Q Consensus 668 pwif~gTIreNIlfG~~~d~~~y~----~vl~ac~----------------L~~d-----i-~~Lp-~Gd~-T~IGe~G~ 719 (1065)
----..+.-+-+.....-.+.+|+ +...+|. ++.| + +.|. .|.. ...-..-.
T Consensus 141 ~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~ 220 (614)
T KOG0927|consen 141 IEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK 220 (614)
T ss_pred CCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh
Confidence 111111111111111100111111 1111111 0000 0 0111 1222 23445677
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCc-EEEEEcCCcchhhc-CCEEEEEeCCE-
Q 001505 720 NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQK-TVLYTTHQLEFLDA-ADLVLVMKDGK- 796 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~k-TvIlVTH~l~~l~~-aD~Ilvl~~G~- 796 (1065)
+||||||-|++|||||.++|+++||||||..||..+-..+ ++.+... ++ |.++++|.-++++. |-+|+.|++++
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wL-ee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWL-EEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH-HHHHHhc--cCceEEEEecchhhhhhHhhhhheecccce
Confidence 9999999999999999999999999999999999987765 4444433 45 99999999999987 99999999999
Q ss_pred EEEecCHHHHHh
Q 001505 797 IEQSGKYEDLIA 808 (1065)
Q Consensus 797 I~e~Gt~~eL~~ 808 (1065)
+...|+|+....
T Consensus 298 ~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 298 IYYEGNYDQYVK 309 (614)
T ss_pred eeecCCHHHHhh
Confidence 788999999875
No 388
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=3e-20 Score=230.48 Aligned_cols=186 Identities=27% Similarity=0.392 Sum_probs=154.3
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc--cCCCCcEEEECC----------eEEEEecCC-CCCCCcHH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI--PRISGAAIKVHG----------KKAYVPQSS-WIQTGTIR 676 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~--~~~~G~i~~v~g----------~iayv~Q~p-wif~gTIr 676 (1065)
...|+| +=-++||.++|++|+||+||||||+.|.|-. -..+|+| .++| .+|||.|++ ++-.-|||
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi-~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI-LISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEE-EECCeeCchhhhccccceeecccccCcccchH
Confidence 456777 8889999999999999999999999999964 2456777 8988 489999975 68899999
Q ss_pred HHHhcCcc-------cchHH---HHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCC-CEEEEe
Q 001505 677 ENILFGKD-------MRQSF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-DVYIFD 745 (1065)
Q Consensus 677 eNIlfG~~-------~d~~~---y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~a-dIlLLD 745 (1065)
|-+.|... -++++ .++|++..+|++-- |..||.-|..||.+||.|+.||=-|..|| .|+.||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD 955 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD 955 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec
Confidence 99998632 13344 45777777776432 34699999999999999999999999999 899999
Q ss_pred CCCCCCCHhHHHHHHHHHHhhh-cCCcEEEEEcCCcch--hhcCCEEEEEe-CCEEEEecCHHH
Q 001505 746 DPFSAVDAHTGTHLFKQCLMGL-LSQKTVLYTTHQLEF--LDAADLVLVMK-DGKIEQSGKYED 805 (1065)
Q Consensus 746 Dp~SALD~~t~~~if~~~i~~l-l~~kTvIlVTH~l~~--l~~aD~Ilvl~-~G~I~e~Gt~~e 805 (1065)
||||+||+.++..|+ +.++.+ ..|+||+..=||++- .+..|+++.|+ +|+.+..|+..+
T Consensus 956 EPTSGLDsqaA~~i~-~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVM-RFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCCCCccHHHHHHHH-HHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999987665 455554 469999999999975 68999999996 899999998654
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.80 E-value=4e-19 Score=206.23 Aligned_cols=186 Identities=26% Similarity=0.449 Sum_probs=144.8
Q ss_pred ccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--------------EEEEecC----CCCCCCc
Q 001505 614 LTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--------------KAYVPQS----SWIQTGT 674 (1065)
Q Consensus 614 L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--------------iayv~Q~----pwif~gT 674 (1065)
.+| +|++++||+++|.|-+|||+|=|+.+|.|.-++.+|+| .++|+ ++|||-+ --+...+
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i-~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEI-LLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceE-EECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 556 99999999999999999999999999999888899999 99995 8999964 4577899
Q ss_pred HHHHHhcCc--ccchH-HHHHHHHHhcchHHHHhh---cCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 001505 675 IRENILFGK--DMRQS-FYEEVLEGCALNQDIEMW---ADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPF 748 (1065)
Q Consensus 675 IreNIlfG~--~~d~~-~y~~vl~ac~L~~di~~L---p~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~ 748 (1065)
|++||.+.. .+... .+++.-+....++.++.| ..+.++.| .+||||-+|++.|||.++.+|+|+||||||
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVvlarwL~~~p~vLilDEPT 429 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVVLARWLATDPKVLILDEPT 429 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHHHHHHHhcCCCEEEECCCC
Confidence 999998761 11000 122222222222333333 33333443 579999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh-hcCCEEEEEeCCEEEEecCHHH
Q 001505 749 SAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL-DAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 749 SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
-++|.-+...|++ .|+++. +|+++|+||-.+..+ ..||||+||.+|+|+..=+.++
T Consensus 430 RGIDVGAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 430 RGIDVGAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred cCcccchHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999888865 566654 589999999998765 6899999999999997544433
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=3.8e-19 Score=188.26 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=107.0
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCC-----Cc----EEEE---CCeEEEEecCCCCCCCcHHHHHhcCcc
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRIS-----GA----AIKV---HGKKAYVPQSSWIQTGTIRENILFGKD 684 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~-----G~----i~~v---~g~iayv~Q~pwif~gTIreNIlfG~~ 684 (1065)
++++.+| +++|+||+|||||||+.+|.-.+.... |. ++.. .+.+.++.|+.-++. | ..
T Consensus 16 ~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~----~~ 85 (198)
T cd03276 16 QIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N----PL 85 (198)
T ss_pred EEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C----cC
Confidence 4556665 779999999999999999874322111 21 0010 124666776654433 2 11
Q ss_pred c--chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHhHHHH
Q 001505 685 M--RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTH 758 (1065)
Q Consensus 685 ~--d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl----y~~adIlLLDDp~SALD~~t~~~ 758 (1065)
. ++++.+++++. .....++..+||||||||++||||+ +++|+++||||||+++|..+...
T Consensus 86 ~~~~~~~~~~~l~~--------------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~ 151 (198)
T cd03276 86 CVLSQDMARSFLTS--------------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKI 151 (198)
T ss_pred CHHHHHHHHHHhcc--------------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHH
Confidence 1 11222233322 1123456679999999999999999 69999999999999999999776
Q ss_pred HHHHHHhhhcC----CcEEEEEcCCcchhhcCCEEEEEeCCE
Q 001505 759 LFKQCLMGLLS----QKTVLYTTHQLEFLDAADLVLVMKDGK 796 (1065)
Q Consensus 759 if~~~i~~ll~----~kTvIlVTH~l~~l~~aD~Ilvl~~G~ 796 (1065)
+.+ .+....+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 152 ~~~-~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 152 STD-LLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHH-HHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 654 5655432 358999999999999999999998753
No 391
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.78 E-value=7e-20 Score=180.96 Aligned_cols=177 Identities=24% Similarity=0.412 Sum_probs=143.4
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-------------EEEEecC-CCCCCCcHHHHHhcC
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-------------KAYVPQS-SWIQTGTIRENILFG 682 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~-------------iayv~Q~-pwif~gTIreNIlfG 682 (1065)
+.++..||..-+|||+||||||||..+.|.. |-+|+| .++|. -||.+|+ .-.|...|-.-+...
T Consensus 19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi-~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~ 96 (248)
T COG4138 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSI-QFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH 96 (248)
T ss_pred ccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceE-EECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc
Confidence 6788999999999999999999999999966 589999 99984 4788875 457778888888877
Q ss_pred cccchHH---HHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc-------CCCEEEEeCCCCCCC
Q 001505 683 KDMRQSF---YEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS-------NSDVYIFDDPFSAVD 752 (1065)
Q Consensus 683 ~~~d~~~---y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~-------~adIlLLDDp~SALD 752 (1065)
.|. +++ .+++.++-+|+ ...|..-..||||+-||+-||-.+++ +.+++|+|||-+.||
T Consensus 97 qP~-~~~a~~i~~i~~~L~l~-----------DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LD 164 (248)
T COG4138 97 QPD-KTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164 (248)
T ss_pred Cch-HHHHHHHHHHHhhhccc-----------chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchh
Confidence 764 332 33333333332 23556667899999999999988876 456999999999999
Q ss_pred HhHHHHHHHHHHhhhc-CCcEEEEEcCCcc-hhhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 753 AHTGTHLFKQCLMGLL-SQKTVLYTTHQLE-FLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 753 ~~t~~~if~~~i~~ll-~~kTvIlVTH~l~-~l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
...+.. .++.+..+. .|.|||+..|++. ++++||++..++.|++..+|.-+|.+.
T Consensus 165 vAQ~~a-Ldrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 165 VAQQSA-LDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred HHHHHH-HHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 987654 466665554 4899999999995 699999999999999999999999986
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=3e-18 Score=191.27 Aligned_cols=163 Identities=25% Similarity=0.422 Sum_probs=129.9
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecC-CCCCCCcHHHHHhcCcc--cchHHHH-H
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQS-SWIQTGTIRENILFGKD--MRQSFYE-E 692 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~-pwif~gTIreNIlfG~~--~d~~~y~-~ 692 (1065)
.=+|..||.++|+||+|-||||+++.|.|+++|++|+ ..+=+++|=||- .--++|||++=+.--.+ +...+|+ +
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~e 438 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTE 438 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHh
Confidence 3356788999999999999999999999999999997 345579999995 23499999997753222 4444444 4
Q ss_pred HHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc--CC
Q 001505 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL--SQ 770 (1065)
Q Consensus 693 vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll--~~ 770 (1065)
+++--.|++-++ .+-.+||||+-||+|+|-||.++||+||||||.+-||.+.. -+..++|+... ++
T Consensus 439 i~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR-~~vakvIRR~~e~~~ 506 (591)
T COG1245 439 IVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR-IIVAKVIRRFIENNE 506 (591)
T ss_pred hcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH-HHHHHHHHHHHhhcC
Confidence 555555544333 34568999999999999999999999999999999999863 45567777654 47
Q ss_pred cEEEEEcCCcchhhc-CCEEEEEe
Q 001505 771 KTVLYTTHQLEFLDA-ADLVLVMK 793 (1065)
Q Consensus 771 kTvIlVTH~l~~l~~-aD~Ilvl~ 793 (1065)
||.++|-|++-++.. +|+++|.+
T Consensus 507 kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 507 KTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ceEEEEecceehhhhhhceEEEEe
Confidence 999999999999877 89999996
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=5e-19 Score=200.66 Aligned_cols=195 Identities=24% Similarity=0.440 Sum_probs=140.0
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhC---cccCCCCcEEEECCeEEEE
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG---EIPRISGAAIKVHGKKAYV 664 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlG---e~~~~~G~i~~v~g~iayv 664 (1065)
..|.+.|.+.+|.+ +..|++ ++++.+|...++||++|+||||||++|.. ..-|.+-++ .|.--+.
T Consensus 79 ~Di~~~~fdLa~G~--------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~---~g~~t~~ 147 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG--------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV---RGDDTEA 147 (582)
T ss_pred cceeeeeeeeeecc--------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhe---eccchHH
Confidence 46888888888874 467878 99999999999999999999999999987 222222222 1211111
Q ss_pred ecCCCCCCCcHHHHHhcCcc-c----c-hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001505 665 PQSSWIQTGTIRENILFGKD-M----R-QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1065)
Q Consensus 665 ~Q~pwif~gTIreNIlfG~~-~----d-~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ 738 (1065)
.|+ -+-.+|-|.-.+.-++ . + ++-|.+++.--+..++....|- ..||||=|-|++||||+.++
T Consensus 148 ~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAlf~~ 216 (582)
T KOG0062|consen 148 LQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARALFAK 216 (582)
T ss_pred Hhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHHhcC
Confidence 111 1223333333333221 0 1 2334456666666777776664 37999999999999999999
Q ss_pred CCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEE-EEecCHHHHHh
Q 001505 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKI-EQSGKYEDLIA 808 (1065)
Q Consensus 739 adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I-~e~Gt~~eL~~ 808 (1065)
||||||||||.-||.+.-..+ ++.+... ..|+|+|+|+-.||.. |..||.+++=++ ...|+|++..+
T Consensus 217 pDlLLLDEPTNhLDv~av~WL-e~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 217 PDLLLLDEPTNHLDVVAVAWL-ENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred CCEEeecCCcccchhHHHHHH-HHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999987765 4455443 3799999999999976 888999988777 35789888865
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.8e-18 Score=189.18 Aligned_cols=195 Identities=22% Similarity=0.355 Sum_probs=141.9
Q ss_pred ccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEEe
Q 001505 589 VAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYVP 665 (1065)
Q Consensus 589 ~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv~ 665 (1065)
+.+-+.||+|.|++. +|..++ +|-|.--+.+|||||+|-||||||++|+|.++|..|+. +-+- +|++-.
T Consensus 585 PvLGlH~VtFgy~gq-------kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~-RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ-------KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL-RKNHRLRIGWFD 656 (807)
T ss_pred CeeecccccccCCCC-------CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchh-hccceeeeechh
Confidence 457789999999876 677777 89899999999999999999999999999999999987 5544 588877
Q ss_pred cCCC---CCCCcHHHHHh--cCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 001505 666 QSSW---IQTGTIRENIL--FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSD 740 (1065)
Q Consensus 666 Q~pw---if~gTIreNIl--fG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ad 740 (1065)
|..- --..|--|-+. |.-||. .-++.+-.-+|..- -.|. +-..||||||.||+||--.++.||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq--~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQ--EARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChH--HHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcCCCC
Confidence 7542 11234444442 434432 22233333333321 1221 235799999999999999999999
Q ss_pred EEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCC-EEEEEeCCEEEE-ecCHHHH
Q 001505 741 VYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAAD-LVLVMKDGKIEQ-SGKYEDL 806 (1065)
Q Consensus 741 IlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD-~Ilvl~~G~I~e-~Gt~~eL 806 (1065)
|+||||||.+||.++-..+ -++|+.. +-.||+|||.-..+...| ...|++|-.|-| .|.+++.
T Consensus 725 vlILDEPTNNLDIESIDAL-aEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDAL-AEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred EEEecCCCCCcchhhHHHH-HHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 9999999999999986554 5667654 458999999998887766 455677666654 3555544
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=5.4e-18 Score=192.36 Aligned_cols=190 Identities=21% Similarity=0.338 Sum_probs=150.4
Q ss_pred CccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC--eEEEE
Q 001505 588 DVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG--KKAYV 664 (1065)
Q Consensus 588 ~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g--~iayv 664 (1065)
.+.+++.+++|.|+++ .. +.+++ ++.+..-+++++||++|.||||+++.+.|+..|.+|.+ .+++ +++|-
T Consensus 360 ~p~l~i~~V~f~y~p~-----~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~-~~~~r~ri~~f 432 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV-GRHPRLRIKYF 432 (582)
T ss_pred CCeeEEEeeeccCCCc-----ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee-eecccceecch
Confidence 3569999999999876 22 56666 99999999999999999999999999999999999988 6665 68999
Q ss_pred ecCCCCC-CCcHHHHH-----hcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 001505 665 PQSSWIQ-TGTIRENI-----LFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSN 738 (1065)
Q Consensus 665 ~Q~pwif-~gTIreNI-----lfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~ 738 (1065)
.|...=+ +-.+.+== --|. .++.|++-+..-+|.-|+..-+ -..||||||-|+++|-+...+
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~--~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGK--TEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCC--CHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCC
Confidence 9964322 11111110 1122 4678888888888877765432 146999999999999999999
Q ss_pred CCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEE
Q 001505 739 SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQ 799 (1065)
Q Consensus 739 adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e 799 (1065)
|.+|+|||||.-||.++-..+ -++++.. +--||+|||+.+|+.. |+.+.+.+||++..
T Consensus 501 PhlLVLDEPTNhLD~dsl~AL-~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 501 PHLLVLDEPTNHLDRDSLGAL-AKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CcEEEecCCCccccHHHHHHH-HHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999986654 3344433 3479999999999976 99999999999986
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.74 E-value=5e-18 Score=180.27 Aligned_cols=141 Identities=17% Similarity=0.135 Sum_probs=107.5
Q ss_pred CeEeeCCc-EEEEECCCCCChHHHHHHHh--------CcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccch
Q 001505 617 KMKIMKGS-KVAVCGSVGSGKSSLLSSIL--------GEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQ 687 (1065)
Q Consensus 617 nl~i~~G~-~vaIvG~~GSGKSTLl~~Ll--------Ge~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~ 687 (1065)
|+++++|+ .++|+||+|||||||++.|. |.+.|....+ .++|+.|.-- .+
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----~~~~~~~~~~----------~l------ 79 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----SLPVFENIFA----------DI------ 79 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----cCcCccEEEE----------ec------
Confidence 89999996 69999999999999999988 5433332221 2344444310 00
Q ss_pred HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh
Q 001505 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767 (1065)
Q Consensus 688 ~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l 767 (1065)
|++..+.++-.++|+|+|||..+++++ .+|+++++|||++++|+.+...+....++.+
T Consensus 80 ---------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l 137 (200)
T cd03280 80 ---------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEEL 137 (200)
T ss_pred ---------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 111123344468999999999999995 8999999999999999999888766666554
Q ss_pred c-CCcEEEEEcCCcchhhcCCEEEEEeCCEEEEe
Q 001505 768 L-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQS 800 (1065)
Q Consensus 768 l-~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~ 800 (1065)
. ++.|+|++||..+....+|++++|++|++...
T Consensus 138 ~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 138 LERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 4 37899999999877888999999999999765
No 397
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.73 E-value=8.6e-18 Score=183.01 Aligned_cols=187 Identities=21% Similarity=0.229 Sum_probs=137.8
Q ss_pred eEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHH---hcCcccc---hHHHH
Q 001505 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI---LFGKDMR---QSFYE 691 (1065)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNI---lfG~~~d---~~~y~ 691 (1065)
+.+.+|++++|+|++|+|||||++.+.+.++...+.+ . .+.|+.+++-.--..+.+.| .+-.++| ..++.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv-~---~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEV-Y---LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCe-E---EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHH
Confidence 4688999999999999999999999999988765554 2 24565666533223344444 1111222 12221
Q ss_pred ---HHHHHh------c-----chHHHHhhcCCCCccccCCCCCCCHHH--------HHHHHHHHHHccCCCEEEEeCCCC
Q 001505 692 ---EVLEGC------A-----LNQDIEMWADGDLSVVGERGINLSGGQ--------KQRIQLARAVYSNSDVYIFDDPFS 749 (1065)
Q Consensus 692 ---~vl~ac------~-----L~~di~~Lp~Gd~T~IGe~G~nLSGGQ--------KQRIaLARAly~~adIlLLDDp~S 749 (1065)
.+++.+ + +-+++..++.++++.+|+.|.++|||| |||+++||+..++++|.+| ||+
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~ 164 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATA 164 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeh
Confidence 111111 1 235789999999999999999999999 9999999999999999999 999
Q ss_pred CCCHhHHHH-HHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHHHhhcchHHHHHH
Q 001505 750 AVDAHTGTH-LFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIADQNSELVRQM 818 (1065)
Q Consensus 750 ALD~~t~~~-if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~~~l~ 818 (1065)
++|+.++.. ++-+.+++ .++|.|+++|++....++|.|.||+.|++ +++++. .++.|..+.
T Consensus 165 ~~d~~~~~~~~i~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~-~~~~~~~~~ 226 (249)
T cd01128 165 LVDTGSRMDDVIFEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLL-DPEELQRMW 226 (249)
T ss_pred eecCCCcccchHHHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhC-CHHHHHHHH
Confidence 999766543 43222333 47899999999999999999999999998 678886 555665543
No 398
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.73 E-value=7.6e-17 Score=183.55 Aligned_cols=207 Identities=23% Similarity=0.336 Sum_probs=163.6
Q ss_pred CCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-----
Q 001505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1065)
Q Consensus 587 ~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~----- 660 (1065)
.+..++++|++..-+. +...+++ ||++++||+++|.|-.|-|-+-|+.+|.|+.++.+|+| .++|+
T Consensus 254 g~~vL~V~~L~v~~~~-------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I-~l~G~~v~~~ 325 (501)
T COG3845 254 GEVVLEVEDLSVKDRR-------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI-LLNGKDVLGR 325 (501)
T ss_pred CCeEEEEeeeEeecCC-------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceE-EECCEecccc
Confidence 3456888888765322 2467888 99999999999999999999999999999999899999 88873
Q ss_pred ----------EEEEecCC----CCCCCcHHHHHhcCcccch-------HHHHHHHHHh-cchHHHHhhcCCCCccccCCC
Q 001505 661 ----------KAYVPQSS----WIQTGTIRENILFGKDMRQ-------SFYEEVLEGC-ALNQDIEMWADGDLSVVGERG 718 (1065)
Q Consensus 661 ----------iayv~Q~p----wif~gTIreNIlfG~~~d~-------~~y~~vl~ac-~L~~di~~Lp~Gd~T~IGe~G 718 (1065)
+||||.+. -+..-|+.||+.++.-.++ -++.++-+.+ .+-+..+.-+.|-++. -
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~----a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP----A 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc----h
Confidence 68999876 4788999999988754321 0111221111 2222222224444443 4
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchh-hcCCEEEEEeCCEE
Q 001505 719 INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL-DAADLVLVMKDGKI 797 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l-~~aD~Ilvl~~G~I 797 (1065)
.+||||+.||+-+||-+-++||++|...||-+||....+.|-++.+...-+|+.|++|+-.++.+ .-||+|.||.+|+|
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCce
Confidence 68999999999999999999999999999999999999999777766667799999999999875 67999999999999
Q ss_pred EEecCHHH
Q 001505 798 EQSGKYED 805 (1065)
Q Consensus 798 ~e~Gt~~e 805 (1065)
+...+.++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98776655
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.71 E-value=6.3e-17 Score=173.20 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=99.4
Q ss_pred EEEEECCCCCChHHHHHHHhCcccCCCC---------cEEEECC---eEEEEec-CCCCCCCcHHHHHhcCcccchHHHH
Q 001505 625 KVAVCGSVGSGKSSLLSSILGEIPRISG---------AAIKVHG---KKAYVPQ-SSWIQTGTIRENILFGKDMRQSFYE 691 (1065)
Q Consensus 625 ~vaIvG~~GSGKSTLl~~LlGe~~~~~G---------~i~~v~g---~iayv~Q-~pwif~gTIreNIlfG~~~d~~~y~ 691 (1065)
+.+|+|++|||||||+.+|.-.+-.... ..+.-+. .+-..-+ +++- =..+|+.+- .++++..
T Consensus 25 ~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~---~~~~n~~~~--~~q~~~~ 99 (213)
T cd03277 25 LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGN---IQVDNLCQF--LPQDRVG 99 (213)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCc---cccCCceEE--EchHHHH
Confidence 7799999999999999998543311110 0001100 1111100 1110 022333221 1333333
Q ss_pred HHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHH----HccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh
Q 001505 692 EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARA----VYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767 (1065)
Q Consensus 692 ~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARA----ly~~adIlLLDDp~SALD~~t~~~if~~~i~~l 767 (1065)
+...... .+-+..+|.+++.. ..+...||||||||+.+|++ +..+|+++|+||||++||+.+...+.+ .+...
T Consensus 100 ~~~~~~~-~e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~-~l~~~ 176 (213)
T cd03277 100 EFAKLSP-IELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFD-MLVET 176 (213)
T ss_pred HHHhCCh-HhHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHH-HHHHH
Confidence 3322211 12234566666543 55678999999999887755 458999999999999999999887754 45554
Q ss_pred cC--C-cEEEEEcCCcch-hhcCC--EEEEEeCCE
Q 001505 768 LS--Q-KTVLYTTHQLEF-LDAAD--LVLVMKDGK 796 (1065)
Q Consensus 768 l~--~-kTvIlVTH~l~~-l~~aD--~Ilvl~~G~ 796 (1065)
.+ + .|+|++||++.. +..+| +|++|++|+
T Consensus 177 ~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 177 ACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred hhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 43 3 489999999754 55565 788888886
No 400
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=4.9e-16 Score=184.49 Aligned_cols=94 Identities=30% Similarity=0.544 Sum_probs=85.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEE
Q 001505 714 VGERGINLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLV 789 (1065)
Q Consensus 714 IGe~G~nLSGGQKQRIaLARAly~~a---dIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~I 789 (1065)
+|..-.+||||+-|||=||.-|.+++ -+|||||||.+|-.|--+++++ .+..+. +|.|||+|-|+++.++.||.|
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecccceEeecCEE
Confidence 79999999999999999999999998 8999999999999988777754 555544 689999999999999999999
Q ss_pred EEE------eCCEEEEecCHHHHHh
Q 001505 790 LVM------KDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 790 lvl------~~G~I~e~Gt~~eL~~ 808 (1065)
+-| +.|+|+.+||++|+.+
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHh
Confidence 999 3689999999999987
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.69 E-value=8.1e-17 Score=165.20 Aligned_cols=133 Identities=26% Similarity=0.325 Sum_probs=95.7
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe--EE-EEecCCCCCCCcHHHHHhcCcccchHHHHHH
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK--KA-YVPQSSWIQTGTIRENILFGKDMRQSFYEEV 693 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~--ia-yv~Q~pwif~gTIreNIlfG~~~d~~~y~~v 693 (1065)
++.+.+|.+++|+||+||||||+++++..-.-..+|.+ ..... .+ ++++..--+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~---------------------- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSAT-RRRSGVKAGCIVAAVSAEL---------------------- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhh-hccCcccCCCcceeeEEEE----------------------
Confidence 45555667999999999999999999765544444443 21110 11 011111000
Q ss_pred HHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-
Q 001505 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL- 768 (1065)
Q Consensus 694 l~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~----~adIlLLDDp~SALD~~t~~~if~~~i~~ll- 768 (1065)
..+. ..||||||||++|||++.. +|+++|||||++++|++.+..+.+ .+....
T Consensus 72 ----------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~-~l~~~~~ 129 (162)
T cd03227 72 ----------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAE-AILEHLV 129 (162)
T ss_pred ----------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh
Confidence 0011 1299999999999999986 789999999999999999887755 454443
Q ss_pred CCcEEEEEcCCcchhhcCCEEEEEeC
Q 001505 769 SQKTVLYTTHQLEFLDAADLVLVMKD 794 (1065)
Q Consensus 769 ~~kTvIlVTH~l~~l~~aD~Ilvl~~ 794 (1065)
++.|+|++||+.+....+|+++.|+.
T Consensus 130 ~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 130 KGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred cCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 36899999999999999999999964
No 402
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.69 E-value=3e-16 Score=159.18 Aligned_cols=200 Identities=23% Similarity=0.370 Sum_probs=150.9
Q ss_pred CCccEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-----
Q 001505 587 SDVAIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK----- 660 (1065)
Q Consensus 587 ~~~~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~----- 660 (1065)
.+.+|++.+..|+|+.. .|..-| |+++|.|....+||.+|+||||||+.|.|-.-...|.| .+.|+
T Consensus 10 ~~~aievsgl~f~y~~~-------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v-~VlgrsaFhD 81 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS-------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVV-QVLGRSAFHD 81 (291)
T ss_pred ccceEEEeccEEecccC-------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeE-EEcCcCcccc
Confidence 35689999999999976 478888 99999999999999999999999999999876666776 87763
Q ss_pred --------EEEEec----------CCCCCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCC
Q 001505 661 --------KAYVPQ----------SSWIQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINL 721 (1065)
Q Consensus 661 --------iayv~Q----------~pwif~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nL 721 (1065)
..|..- +.-||-+-=.|..+||-.. |.+|-++.++.-.. | +-=|-..+
T Consensus 82 t~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDI--d-----------l~WRmHkv 148 (291)
T KOG2355|consen 82 TSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDI--D-----------LRWRMHKV 148 (291)
T ss_pred ccccccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheec--c-----------ceEEEeec
Confidence 233221 2223322233455555432 34555555543211 1 22345678
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhh--hcCCcEEEEEcCCcchhhc-CCEEEEEeCCEEE
Q 001505 722 SGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG--LLSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIE 798 (1065)
Q Consensus 722 SGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~--ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~ 798 (1065)
|-|||.|++|+-.+++.=+++||||.|--||.-....+.+ .++. --++.|+|+.||=.+-|.. +.+++.|++|+++
T Consensus 149 SDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLe-FlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 149 SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLE-FLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred cccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHH-HHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeee
Confidence 9999999999999999999999999999999988776653 4433 2468999999999988865 8999999999999
Q ss_pred EecCHHHHHh
Q 001505 799 QSGKYEDLIA 808 (1065)
Q Consensus 799 e~Gt~~eL~~ 808 (1065)
..-+|++..+
T Consensus 228 ~~l~~~~i~e 237 (291)
T KOG2355|consen 228 DNLKYQKIKE 237 (291)
T ss_pred eccccchhhh
Confidence 9777776654
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=178.91 Aligned_cols=160 Identities=28% Similarity=0.404 Sum_probs=128.3
Q ss_pred eeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEE-----------------------------EECCeEEEEecCCCC
Q 001505 620 IMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAI-----------------------------KVHGKKAYVPQSSWI 670 (1065)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~-----------------------------~v~g~iayv~Q~pwi 670 (1065)
.++|+.++|+|++|-||||-++.|.||+.|.-|.-- ++--++-||.--|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 458999999999999999999999999999877530 111135577667888
Q ss_pred CCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001505 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1065)
Q Consensus 671 f~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SA 750 (1065)
+.||++|=+.--. +..+++++++.-+|++-++ ..-..||||+-||+|||-|+.+|+|+|++|||+|-
T Consensus 177 ~KG~v~elLk~~d--e~g~~devve~l~L~nvl~-----------r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSy 243 (591)
T COG1245 177 VKGKVGELLKKVD--ERGKFDEVVERLGLENVLD-----------RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSY 243 (591)
T ss_pred hcchHHHHHHhhh--hcCcHHHHHHHhcchhhhh-----------hhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccc
Confidence 9999999775321 2247888888887765432 23457999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcchhhc-CCEEEEEe
Q 001505 751 VDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFLDA-ADLVLVMK 793 (1065)
Q Consensus 751 LD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~l~~-aD~Ilvl~ 793 (1065)
||....-.. -+.|+++.+ +|+||+|-|++..|.. +|.|.++-
T Consensus 244 LDi~qRl~~-ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 244 LDIRQRLNA-ARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred ccHHHHHHH-HHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999764333 566788887 6999999999999976 89998885
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=2.8e-16 Score=175.20 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCC
Q 001505 720 NLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~----~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G 795 (1065)
+||||||||++|||+++. +|++++||||+++||+++...+. +.+..+.+++|+|+|||+++....||++++|++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSRSHQVLCITHLPQVAAMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence 599999999999997543 99999999999999999987764 5677776789999999999988999999999876
Q ss_pred E
Q 001505 796 K 796 (1065)
Q Consensus 796 ~ 796 (1065)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 4
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.67 E-value=5.6e-16 Score=202.58 Aligned_cols=99 Identities=28% Similarity=0.419 Sum_probs=87.9
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh
Q 001505 708 DGDLSVVGERGINLSGGQKQRIQLARAVYSN---SDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL 783 (1065)
Q Consensus 708 ~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~---adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l 783 (1065)
-||.+ +|..-.+||||+.|||-||.-|.++ +.+|+|||||.+|+++.-+++. +++..+. +|.|||+|.|+++++
T Consensus 1688 LgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvivieH~~~~i 1765 (1809)
T PRK00635 1688 LGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIYIDHDPALL 1765 (1809)
T ss_pred CCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCHHHH
Confidence 36665 6999999999999999999999876 7899999999999999877765 4566653 589999999999999
Q ss_pred hcCCEEEEEe------CCEEEEecCHHHHHh
Q 001505 784 DAADLVLVMK------DGKIEQSGKYEDLIA 808 (1065)
Q Consensus 784 ~~aD~Ilvl~------~G~I~e~Gt~~eL~~ 808 (1065)
+.||+|+-|. .|+|+.+||++|+.+
T Consensus 1766 ~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1766 KQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred HhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999994 589999999999987
No 406
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=6e-16 Score=192.68 Aligned_cols=196 Identities=24% Similarity=0.357 Sum_probs=153.6
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCC---CCcEEEECC----------eEEEEecCCC-CCCCcH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI---SGAAIKVHG----------KKAYVPQSSW-IQTGTI 675 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~---~G~i~~v~g----------~iayv~Q~pw-if~gTI 675 (1065)
...++| +.-++||+.+.+.||.||||||||+++.|..+.. .|+| ..+| .++|++|+.+ +-..|+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~i-sy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEI-TYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCce-eECCCcccccccCceEEeccccccccceeEE
Confidence 357888 9999999999999999999999999999987643 4566 7766 5899999765 557899
Q ss_pred HHHHhcCcc--cchHHHHHHHHHh---cchH---HHHhhcCCCCccccCCC-CCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 001505 676 RENILFGKD--MRQSFYEEVLEGC---ALNQ---DIEMWADGDLSVVGERG-INLSGGQKQRIQLARAVYSNSDVYIFDD 746 (1065)
Q Consensus 676 reNIlfG~~--~d~~~y~~vl~ac---~L~~---di~~Lp~Gd~T~IGe~G-~nLSGGQKQRIaLARAly~~adIlLLDD 746 (1065)
||-+-|... .+..||+++-+.- +..+ -+-.|.+..||.||.+. ...|||||.||++|-++..++.++..||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999988531 1111222111111 1111 12245678899999764 4789999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHHhhh--cCCcEEEEEcCCcc--hhhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 747 PFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLE--FLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 747 p~SALD~~t~~~if~~~i~~l--l~~kTvIlVTH~l~--~l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
+|-+||+.|+=++. ++++.+ .-+.|.++.=||.+ .....|+|++|.+|+++..|+.++.+.
T Consensus 287 ~t~GLDSsTal~ii-k~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQII-KALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHH-HHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999987765 467554 34789999999875 578899999999999999999999875
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.58 E-value=6.8e-15 Score=162.75 Aligned_cols=176 Identities=27% Similarity=0.362 Sum_probs=131.2
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCc--------ccCCCCcEEEECC-eE-EEEec--CCCCCCCcHHH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGE--------IPRISGAAIKVHG-KK-AYVPQ--SSWIQTGTIRE 677 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe--------~~~~~G~i~~v~g-~i-ayv~Q--~pwif~gTIre 677 (1065)
..+|+| ||+|++|+.++|+|+|||||||++..|+|. |.|++|.| .+.- ++ |.+|- +|-+-.-||.|
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v-~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV-EVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCce-eccccchhhccCcccccccCchhHHH
Confidence 457889 999999999999999999999999999986 46888987 6532 22 33443 34444446666
Q ss_pred HHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHH
Q 001505 678 NILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGT 757 (1065)
Q Consensus 678 NIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~ 757 (1065)
.+- ..+-|-.--.+++..++|.+- ..--.+-..||-|||-|..||+++-.+|.+++-||--|-||..|+.
T Consensus 475 hl~-s~tGD~~~AveILnraGlsDA---------vlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 475 HLR-SKTGDLNAAVEILNRAGLSDA---------VLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred HHh-hccCchhHHHHHHHhhccchh---------hhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 542 222233334566666666432 2222334579999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhc--CCcEEEEEcCCcchhhc--CCEEEEEeCCEEE
Q 001505 758 HLFKQCLMGLL--SQKTVLYTTHQLEFLDA--ADLVLVMKDGKIE 798 (1065)
Q Consensus 758 ~if~~~i~~ll--~~kTvIlVTH~l~~l~~--aD~Ilvl~~G~I~ 798 (1065)
.+-.+ |..+. .+-|.+.||||.++... -|+++.+.=|+..
T Consensus 545 rVArk-iselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 545 RVARK-ISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHH-HHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 87554 55554 47899999999999876 5999888766543
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.58 E-value=1.1e-15 Score=162.46 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=106.6
Q ss_pred ccCCeEeeCCcEEEEECCCCCChHHHHHHHh-CcccCCCCcEEEE--CCeEEEEecCCCCCCCcHHHHHhcCcccchHHH
Q 001505 614 LTDKMKIMKGSKVAVCGSVGSGKSSLLSSIL-GEIPRISGAAIKV--HGKKAYVPQSSWIQTGTIRENILFGKDMRQSFY 690 (1065)
Q Consensus 614 L~~nl~i~~G~~vaIvG~~GSGKSTLl~~Ll-Ge~~~~~G~i~~v--~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y 690 (1065)
..+++++.+|++++|+||+|||||||+++|. +.+....|.. .- ...++|+.|.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~-~~~~~~~i~~~dqi----------------------- 75 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCF-VPAESASIPLVDRI----------------------- 75 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCC-ccccccccCCcCEE-----------------------
Confidence 3347888999999999999999999999998 3333334432 10 1122222211
Q ss_pred HHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-C
Q 001505 691 EEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-S 769 (1065)
Q Consensus 691 ~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~ 769 (1065)
+..++..+ .+-++-..+++++|| ++.+.+...+|+++|||||++++|+.....+....++.+. +
T Consensus 76 ------------~~~~~~~d--~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~ 140 (202)
T cd03243 76 ------------FTRIGAED--SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK 140 (202)
T ss_pred ------------EEEecCcc--cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 11111111 122333456666665 7777788899999999999999999987766555454433 3
Q ss_pred CcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHH
Q 001505 770 QKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 770 ~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
+.|+|++||+.+....+|++..+++|++...+..++
T Consensus 141 ~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 141 GCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred CCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 789999999999999999999999999988765433
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.6e-14 Score=160.64 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=67.3
Q ss_pred hcCCCCccccCCCCC----CCHHHHHHHHHHHHH---------ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcE
Q 001505 706 WADGDLSVVGERGIN----LSGGQKQRIQLARAV---------YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKT 772 (1065)
Q Consensus 706 Lp~Gd~T~IGe~G~n----LSGGQKQRIaLARAl---------y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kT 772 (1065)
-|+.|+..+.-++.+ +|+|||||++|||++ +++|+++||||||++||++..+.+++ .+... + .
T Consensus 165 g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~-~l~~~--~-q 240 (270)
T cd03242 165 GPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLD-AIEGR--V-Q 240 (270)
T ss_pred CCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHH-HhhcC--C-C
Confidence 477777776655554 899999999999997 48999999999999999999877654 44432 2 4
Q ss_pred EEEEcCCcchhhc-C---CEEEEEeCCEE
Q 001505 773 VLYTTHQLEFLDA-A---DLVLVMKDGKI 797 (1065)
Q Consensus 773 vIlVTH~l~~l~~-a---D~Ilvl~~G~I 797 (1065)
++++||+.+.+.. | ++|+.|++|+|
T Consensus 241 ~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 241 TFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEEEeCCchhccchhccCccEEEEeCcEE
Confidence 5555555554433 4 78999999987
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.56 E-value=1.7e-15 Score=163.25 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=104.8
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEE-EEecCCCCCCCcHHHHHhcCcccchH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKA-YVPQSSWIQTGTIRENILFGKDMRQS 688 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~ia-yv~Q~pwif~gTIreNIlfG~~~d~~ 688 (1065)
+++.+| ++++++|++++|+||+||||||+++.+.- + .+-.+++ |||.+.-.. .+.|
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------~-~~la~~g~~vpa~~~~~--~~~~----------- 74 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------I-VLMAQIGCFVPCDSADI--PIVD----------- 74 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------H-HHHHHhCCCcCcccEEE--eccc-----------
Confidence 456666 88888999999999999999999998861 1 1111222 444432110 0111
Q ss_pred HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHhHHHHHHHHH
Q 001505 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAV--YSNSDVYIFDDP---FSAVDAHTGTHLFKQC 763 (1065)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAl--y~~adIlLLDDp---~SALD~~t~~~if~~~ 763 (1065)
++++..++.+++ ..++|+|++||..+|+++ ..+|+++||||| |+++|+......+-+.
T Consensus 75 ---~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~ 137 (222)
T cd03285 75 ---CILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEY 137 (222)
T ss_pred ---eeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHH
Confidence 111122222111 357999999999999999 899999999999 8999988765433222
Q ss_pred HhhhcCCcEEEEEcCCcchhhcCCEEEEEeCCEEEEec
Q 001505 764 LMGLLSQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSG 801 (1065)
Q Consensus 764 i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~G 801 (1065)
+.. .+++|+|++||..+....||++..+++|++...+
T Consensus 138 l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 138 IAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred HHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 322 2478999999976667779999999999997654
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.55 E-value=1.5e-14 Score=182.41 Aligned_cols=137 Identities=23% Similarity=0.308 Sum_probs=101.6
Q ss_pred CCCCCcHHHHHhcCccc--chH--H-HHHHHHHhc-chHHHHhhcCCCCcc-ccCCCCCCCHHHHHHHHHHHHHccCC--
Q 001505 669 WIQTGTIRENILFGKDM--RQS--F-YEEVLEGCA-LNQDIEMWADGDLSV-VGERGINLSGGQKQRIQLARAVYSNS-- 739 (1065)
Q Consensus 669 wif~gTIreNIlfG~~~--d~~--~-y~~vl~ac~-L~~di~~Lp~Gd~T~-IGe~G~nLSGGQKQRIaLARAly~~a-- 739 (1065)
-+++.||.|.+.|-+.. +++ . -+.+++... --+.++.+ |.... .+..-.+|||||||||+||||+.++|
T Consensus 433 ~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~ 510 (943)
T PRK00349 433 EVSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLKFLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTG 510 (943)
T ss_pred HHhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCC
Confidence 34677888888775443 111 1 111111110 00123333 33322 46677899999999999999999997
Q ss_pred CEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEE------eCCEEEEecCHHHHHh
Q 001505 740 DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVM------KDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 740 dIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl------~~G~I~e~Gt~~eL~~ 808 (1065)
++|||||||++||++..+.++ +.++.+. +|+|||+|+|+++.+..||+|++| ++|+|+..|+++|+.+
T Consensus 511 ~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 511 VLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred cEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 999999999999999987775 4566554 489999999999999999999999 9999999999999875
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=1.8e-14 Score=181.33 Aligned_cols=94 Identities=31% Similarity=0.464 Sum_probs=84.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEE
Q 001505 714 VGERGINLSGGQKQRIQLARAVYSNS--DVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVL 790 (1065)
Q Consensus 714 IGe~G~nLSGGQKQRIaLARAly~~a--dIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Il 790 (1065)
.+....+|||||+|||.||||+.++| ++|||||||++||++..++++ +.++.+. +|+|||+|+|+++.+..||+|+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVIVVEHDEETIRAADYVI 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHhhCCEEE
Confidence 46778899999999999999999986 899999999999999988775 4566553 4789999999999999999999
Q ss_pred EE------eCCEEEEecCHHHHHh
Q 001505 791 VM------KDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 791 vl------~~G~I~e~Gt~~eL~~ 808 (1065)
+| ++|+|+..|+++++..
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhc
Confidence 99 8999999999999865
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.52 E-value=1.7e-14 Score=152.83 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=91.1
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-CCCcEEEECCeEEEEecCCCC-CCCcHHHHHhcCcccchHHHHHHH
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHGKKAYVPQSSWI-QTGTIRENILFGKDMRQSFYEEVL 694 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-~~G~i~~v~g~iayv~Q~pwi-f~gTIreNIlfG~~~d~~~y~~vl 694 (1065)
++++.+|+.++|+||+|||||||+++|.|.... ..|. .+.+. .++.|..-+ .+.|++||+.+|.....++.+++
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~--~v~a~-~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~- 94 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGA--PVCAS-SFELPPVKIFTSIRVSDDLRDGISYFYAELRRL- 94 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCC--EEecC-ccCcccceEEEeccchhccccccChHHHHHHHH-
Confidence 677888999999999999999999999886532 2343 23322 355564334 46799999998864322111211
Q ss_pred HHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEE
Q 001505 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTV 773 (1065)
Q Consensus 695 ~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTv 773 (1065)
.+-++.+. .++|+++|+|||++++|+.....+....++.+. ++.|+
T Consensus 95 -----~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~ti 141 (199)
T cd03283 95 -----KEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIG 141 (199)
T ss_pred -----HHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 11122211 079999999999999999988766555554443 47899
Q ss_pred EEEcCCcchhhcC
Q 001505 774 LYTTHQLEFLDAA 786 (1065)
Q Consensus 774 IlVTH~l~~l~~a 786 (1065)
|++||+++.+...
T Consensus 142 iivTH~~~~~~~~ 154 (199)
T cd03283 142 IISTHDLELADLL 154 (199)
T ss_pred EEEcCcHHHHHhh
Confidence 9999998876443
No 414
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.45 E-value=2.4e-13 Score=138.39 Aligned_cols=188 Identities=23% Similarity=0.303 Sum_probs=137.3
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcE----EE-----------------ECCeEEEEecCCCCC---C
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAA----IK-----------------VHGKKAYVPQSSWIQ---T 672 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i----~~-----------------v~g~iayv~Q~pwif---~ 672 (1065)
|++...||+-++||.+|||||-..++|.|-.. ..=.| .+ +...|+.+.|+|--. +
T Consensus 27 ~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k-dnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS 105 (330)
T COG4170 27 SMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPS 105 (330)
T ss_pred eeeeccceeeeeeccCCCchhHHHHHHhcccc-cceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChH
Confidence 99999999999999999999999999999653 11111 01 112488999998633 2
Q ss_pred CcH----HHHHhcCc---c------cchHHHHHHHHHhcch--HHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 001505 673 GTI----RENILFGK---D------MRQSFYEEVLEGCALN--QDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS 737 (1065)
Q Consensus 673 gTI----reNIlfG~---~------~d~~~y~~vl~ac~L~--~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~ 737 (1065)
.+| -+||-+-. . +.+.+--+.++..+.+ +||.. .|-. .|--|+-|++-||-|+..
T Consensus 106 ~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP~-------ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 106 ERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYPY-------ELTEGECQKVMIAIALAN 175 (330)
T ss_pred HHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCcc-------hhccCcceeeeeehhhcc
Confidence 233 35553211 1 1223334566677765 45542 2222 344567788999999999
Q ss_pred CCCEEEEeCCCCCCCHhHHHHHHHHHHhhh--cCCcEEEEEcCCcchhhc-CCEEEEEeCCEEEEecCHHHHHhhcchHH
Q 001505 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGL--LSQKTVLYTTHQLEFLDA-ADLVLVMKDGKIEQSGKYEDLIADQNSEL 814 (1065)
Q Consensus 738 ~adIlLLDDp~SALD~~t~~~if~~~i~~l--l~~kTvIlVTH~l~~l~~-aD~Ilvl~~G~I~e~Gt~~eL~~~~~~~~ 814 (1065)
+|+++|-||||.++|+.|..+||. .+..+ -.+.|+++++|++..+.. ||+|-||-=|+-+|++.-+++++.....|
T Consensus 176 qPrLLIADEPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPY 254 (330)
T COG4170 176 QPRLLIADEPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPY 254 (330)
T ss_pred CCceEeccCCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCch
Confidence 999999999999999999999985 34322 357899999999999865 99999999999999999999998555555
Q ss_pred HH
Q 001505 815 VR 816 (1065)
Q Consensus 815 ~~ 816 (1065)
.+
T Consensus 255 Tq 256 (330)
T COG4170 255 TQ 256 (330)
T ss_pred HH
Confidence 44
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=7.7e-13 Score=140.62 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=97.9
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEe-cCCCCCCCcHHHHHhcCcccchH
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVP-QSSWIQTGTIRENILFGKDMRQS 688 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~-Q~pwif~gTIreNIlfG~~~d~~ 688 (1065)
+++.+| ++++++|+.++|.||+||||||+++++.+..-. +.+ | .||| +.+. -++.|||...
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--a~~----G--~~vpa~~~~---l~~~d~I~~~------ 78 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--AQI----G--CFVPAEYAT---LPIFNRLLSR------ 78 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--HHc----C--CCcchhhcC---ccChhheeEe------
Confidence 456677 899999999999999999999999998765311 111 1 1222 2222 2666776321
Q ss_pred HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc
Q 001505 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1065)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll 768 (1065)
+..+| .+.++..++|+|+||+ +.+-+...+++++|||||++++|+..+..+....++.+.
T Consensus 79 -----------------~~~~d--~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~ 138 (204)
T cd03282 79 -----------------LSNDD--SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI 138 (204)
T ss_pred -----------------cCCcc--ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH
Confidence 11111 2345567899999975 555567789999999999999999987777666565544
Q ss_pred -CCcEEEEEcCCcchhhcC
Q 001505 769 -SQKTVLYTTHQLEFLDAA 786 (1065)
Q Consensus 769 -~~kTvIlVTH~l~~l~~a 786 (1065)
.++|+|++||..+....+
T Consensus 139 ~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 139 KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred hcCCEEEEECChHHHHHHh
Confidence 378999999999887653
No 416
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=5.6e-13 Score=177.20 Aligned_cols=113 Identities=21% Similarity=0.297 Sum_probs=95.1
Q ss_pred CCC--CCCCcHHHHHhcCccc-chHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHH------HHHHHHHHcc
Q 001505 667 SSW--IQTGTIRENILFGKDM-RQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQ------RIQLARAVYS 737 (1065)
Q Consensus 667 ~pw--if~gTIreNIlfG~~~-d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQ------RIaLARAly~ 737 (1065)
+-| .|+||++|||.+ ++- +++ ..+.+..+....+..+|.| +|+++.+| +||||||| |++||||+..
T Consensus 1148 ~~w~~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~ 1222 (1311)
T TIGR00606 1148 DLWRSTYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCL 1222 (1311)
T ss_pred HHHHHHcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhc
Confidence 445 689999999999 553 333 5677777888999999999 89999987 99999999 9999999999
Q ss_pred CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc------CCcEEEEEcCCcchhhc
Q 001505 738 NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL------SQKTVLYTTHQLEFLDA 785 (1065)
Q Consensus 738 ~adIlLLDDp~SALD~~t~~~if~~~i~~ll------~~kTvIlVTH~l~~l~~ 785 (1065)
+|++++|||||++||+.+...+. +.+..+. .+.|+|+|||+++++..
T Consensus 1223 ~~~il~lDEPt~~lD~~~~~~l~-~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1223 NCGIIALDEPTTNLDRENIESLA-HALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 99999999999999999987664 4454432 36899999999998764
No 417
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.41 E-value=1.1e-12 Score=141.26 Aligned_cols=72 Identities=32% Similarity=0.409 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHH----HHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEE
Q 001505 720 NLSGGQKQRIQLA----RAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1065)
Q Consensus 720 nLSGGQKQRIaLA----RAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl 792 (1065)
.||||||-+++|| .+-+.++++|+||||.++||....+++. +.|....++.-+|++||+..+...||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 9999999999997 4446789999999999999999987764 5677777788999999999999999998876
No 418
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=7.7e-13 Score=146.67 Aligned_cols=199 Identities=22% Similarity=0.341 Sum_probs=139.1
Q ss_pred cEEEeeeEEEecccccccCCCcccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCC
Q 001505 590 AIDIEAGEYAWDAREENFKKPTIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1065)
Q Consensus 590 ~I~~~n~sfsw~~~~~~~~~~~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~p 668 (1065)
.|.++|.+.+-.+ +....| ||.|-.|...++|||+|-||||||+-|..---...-.| .+-||.|+.
T Consensus 264 DIKiEnF~ISA~G--------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnI-----DvLlCEQEv 330 (807)
T KOG0066|consen 264 DIKIENFDISAQG--------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNI-----DVLLCEQEV 330 (807)
T ss_pred cceeeeeeeeccc--------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCC-----ceEeeeeee
Confidence 3677776665433 234445 99999999999999999999999999875322222222 367888887
Q ss_pred CCCCCcHHHHHhcCc---------------------ccchHHHHHHH---HHhcc---h----HHHHhhcCCCCccccCC
Q 001505 669 WIQTGTIRENILFGK---------------------DMRQSFYEEVL---EGCAL---N----QDIEMWADGDLSVVGER 717 (1065)
Q Consensus 669 wif~gTIreNIlfG~---------------------~~d~~~y~~vl---~ac~L---~----~di~~Lp~Gd~T~IGe~ 717 (1065)
.--+.|--+-|+=.. .--.++.++|. ++.+. + +-++. -|..-+.-+|
T Consensus 331 vad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~r 408 (807)
T KOG0066|consen 331 VADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQER 408 (807)
T ss_pred eecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcC
Confidence 766665555554221 11122333322 22111 1 11222 2666777777
Q ss_pred CC-CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc-CCEEEEEeCC
Q 001505 718 GI-NLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA-ADLVLVMKDG 795 (1065)
Q Consensus 718 G~-nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~-aD~Ilvl~~G 795 (1065)
.. ..|||=|-||+||||||-.|-++.|||||..||-..--++ ++.+.|+ .||.++|+|.-.||.. |..|+.+|+-
T Consensus 409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhh
Confidence 65 5899999999999999999999999999999998865443 5666665 4799999999999976 8999999998
Q ss_pred EEE-EecCHHHH
Q 001505 796 KIE-QSGKYEDL 806 (1065)
Q Consensus 796 ~I~-e~Gt~~eL 806 (1065)
+.. ..|+|.-.
T Consensus 486 kLhyYrGNY~~F 497 (807)
T KOG0066|consen 486 KLHYYRGNYTLF 497 (807)
T ss_pred hhhhhcchHHHH
Confidence 874 46777544
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.33 E-value=2.9e-12 Score=137.64 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=94.5
Q ss_pred ccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcc-cCCCCcEEE-ECCeEEEEecCCCCCCCcHHHHHhcCcccchH
Q 001505 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEI-PRISGAAIK-VHGKKAYVPQSSWIQTGTIRENILFGKDMRQS 688 (1065)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~-~~~~G~i~~-v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~ 688 (1065)
.+.+| +++.++ ++++|+||+||||||+++.+.+.. ....|..+. -..+++|+.|- ...-+++||+..|.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i--~~~~~~~~~ls~g~----- 90 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRI--FTRIGASDDLAGGR----- 90 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeE--eccCCchhhhccCc-----
Confidence 34455 666655 899999999999999999996522 122343211 12356666542 12234444444331
Q ss_pred HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCC---CCCCCHhHHHHHHHHH
Q 001505 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY--SNSDVYIFDDP---FSAVDAHTGTHLFKQC 763 (1065)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly--~~adIlLLDDp---~SALD~~t~~~if~~~ 763 (1065)
|-=...+..+++++- .+|+++||||| |+++|.... ....
T Consensus 91 ---------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~---~~~i 134 (216)
T cd03284 91 ---------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI---AWAI 134 (216)
T ss_pred ---------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH---HHHH
Confidence 111122234556554 69999999999 888887542 2222
Q ss_pred Hhhhc--CCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHHH
Q 001505 764 LMGLL--SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYEDL 806 (1065)
Q Consensus 764 i~~ll--~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL 806 (1065)
++.+. .+.|+|++||..+....+|++.-+++|++...++.+++
T Consensus 135 l~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 135 VEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 22222 37899999999888788888878888988766554443
No 420
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.27 E-value=7e-12 Score=138.32 Aligned_cols=140 Identities=21% Similarity=0.257 Sum_probs=88.6
Q ss_pred cEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCe-EEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHH
Q 001505 624 SKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGK-KAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQD 702 (1065)
Q Consensus 624 ~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~-iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~d 702 (1065)
+-++|+||+|||||||+++|.|++++.+|++ .++|+ +..+ | ++ .+.. .| ...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i-~~~g~~v~~~---------------------d-~~-~ei~-~~--~~~ 164 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQL-GLRGKKVGIV---------------------D-ER-SEIA-GC--VNG 164 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceE-EECCEEeecc---------------------h-hH-HHHH-HH--hcc
Confidence 5789999999999999999999999999999 88884 3311 1 00 0110 01 001
Q ss_pred HHhhcCCCCccccCCCCCCCHHHHH--HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCc
Q 001505 703 IEMWADGDLSVVGERGINLSGGQKQ--RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQL 780 (1065)
Q Consensus 703 i~~Lp~Gd~T~IGe~G~nLSGGQKQ--RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l 780 (1065)
+.+..-|..|.+-+ +=.|+ -..++|| .+||++++|||.+. ..+...++.+.+++|+|++||..
T Consensus 165 ~~q~~~~~r~~v~~------~~~k~~~~~~~i~~--~~P~villDE~~~~-------e~~~~l~~~~~~G~~vI~ttH~~ 229 (270)
T TIGR02858 165 VPQHDVGIRTDVLD------GCPKAEGMMMLIRS--MSPDVIVVDEIGRE-------EDVEALLEALHAGVSIIATAHGR 229 (270)
T ss_pred cccccccccccccc------cchHHHHHHHHHHh--CCCCEEEEeCCCcH-------HHHHHHHHHHhCCCEEEEEechh
Confidence 11111122222222 21121 3556666 59999999999742 12233344444689999999976
Q ss_pred ch--h------------hcCCEEEEEeCCEEEEecCHHHHH
Q 001505 781 EF--L------------DAADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 781 ~~--l------------~~aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
+. + ..+|++++|++|+ ..|+.+++.
T Consensus 230 ~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 230 DVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred HHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 55 3 4589999999877 667666553
No 421
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.27 E-value=5.8e-12 Score=154.73 Aligned_cols=92 Identities=26% Similarity=0.357 Sum_probs=80.1
Q ss_pred hhcCCCCccccCCC------CCCCHHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHhHHHHHHHHHHhhh
Q 001505 705 MWADGDLSVVGERG------INLSGGQKQRIQLARAVY----------SNSDVYIFDDPF-SAVDAHTGTHLFKQCLMGL 767 (1065)
Q Consensus 705 ~Lp~Gd~T~IGe~G------~nLSGGQKQRIaLARAly----------~~adIlLLDDp~-SALD~~t~~~if~~~i~~l 767 (1065)
.+|+|.++.+++.| .+||||||||++||||+. .+|+++|||||| ++||+.....+. +.+..+
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~-~~l~~~ 525 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALL-SILDSL 525 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHH-HHHHhC
Confidence 46888889999988 689999999999999987 599999999998 789999987764 467766
Q ss_pred cCCcEEEEEcCCcchhhcCCEEEEEeC-CEEE
Q 001505 768 LSQKTVLYTTHQLEFLDAADLVLVMKD-GKIE 798 (1065)
Q Consensus 768 l~~kTvIlVTH~l~~l~~aD~Ilvl~~-G~I~ 798 (1065)
+++|+|+|||+.+....+|++++|++ |+..
T Consensus 526 -~~~~iiiish~~~~~~~~d~~~~l~~~~~~~ 556 (562)
T PHA02562 526 -KDTNVFVISHKDHDPQKFDRHLKMEKVGRFS 556 (562)
T ss_pred -CCCeEEEEECchhchhhhhcEEEEEEECCee
Confidence 78999999999988899999999985 6543
No 422
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.26 E-value=2.4e-11 Score=135.43 Aligned_cols=185 Identities=23% Similarity=0.349 Sum_probs=130.2
Q ss_pred cccccC-CeEeeCCc-----EEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCC-CCCCCcHHHHHh---
Q 001505 611 TIKLTD-KMKIMKGS-----KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS-WIQTGTIRENIL--- 680 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~-----~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~p-wif~gTIreNIl--- 680 (1065)
+....+ .|.|+.|+ .+.-.|.+|-||||++..+.|..+|++|.- .-.=+++|=||.- -=+.+|+|+=.-
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e-~p~lnVSykpqkispK~~~tvR~ll~~kI 427 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGE-IPVLNVSYKPQKISPKREGTVRQLLHTKI 427 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCc-ccccceeccccccCccccchHHHHHHHHh
Confidence 445555 78888875 677889999999999999999999998853 1223689999962 357889987552
Q ss_pred cCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHH
Q 001505 681 FGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLF 760 (1065)
Q Consensus 681 fG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if 760 (1065)
-..-++.....+|.+--.. +..++..-.+||||+.||++||-++=+.||+|+.|||-+-||.+.... -
T Consensus 428 r~ay~~pqF~~dvmkpL~i-----------e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~-A 495 (592)
T KOG0063|consen 428 RDAYMHPQFVNDVMKPLQI-----------ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRII-A 495 (592)
T ss_pred HhhhcCHHHHHhhhhhhhH-----------HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHH-H
Confidence 1112233344444443322 223555668999999999999999999999999999999999986432 2
Q ss_pred HHHHhhh-c-CCcEEEEEcCCcchhh-cCCEEEEEeC--CEEEEecCHHHHHh
Q 001505 761 KQCLMGL-L-SQKTVLYTTHQLEFLD-AADLVLVMKD--GKIEQSGKYEDLIA 808 (1065)
Q Consensus 761 ~~~i~~l-l-~~kTvIlVTH~l~~l~-~aD~Ilvl~~--G~I~e~Gt~~eL~~ 808 (1065)
.+.++.. + .+||-..|-|..-... .||+++|.+. +.....-.++.|+.
T Consensus 496 skvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 496 SKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred HHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 3334332 2 4789999999876553 3999999973 33344445556654
No 423
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.23 E-value=1e-11 Score=130.30 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=83.3
Q ss_pred EEEECCCCCChHHHHHHHh-CcccCCCCcEEEEC-CeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHH
Q 001505 626 VAVCGSVGSGKSSLLSSIL-GEIPRISGAAIKVH-GKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703 (1065)
Q Consensus 626 vaIvG~~GSGKSTLl~~Ll-Ge~~~~~G~i~~v~-g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di 703 (1065)
++|.||+||||||+++.+. ..+-...|..+.-. .+++|+.|- +
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~i-----------------------------------l 46 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRI-----------------------------------F 46 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceE-----------------------------------E
Confidence 6799999999999999997 55444555431110 123332221 1
Q ss_pred HhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC--CcEEEEEcCC
Q 001505 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYS--NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS--QKTVLYTTHQ 779 (1065)
Q Consensus 704 ~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~--~adIlLLDDp~SALD~~t~~~if~~~i~~ll~--~kTvIlVTH~ 779 (1065)
..++ ++..+.++-.++|+|++| +++++-. +|+++|+|||++++|+..+..++...++.+.+ +.++|++||.
T Consensus 47 ~~~~--~~d~~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~ 121 (185)
T smart00534 47 TRIG--ASDSLAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred EEeC--CCCchhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 1111 111234455688888887 5555555 99999999999999999888887776665543 7899999999
Q ss_pred cchhhcCCE
Q 001505 780 LEFLDAADL 788 (1065)
Q Consensus 780 l~~l~~aD~ 788 (1065)
.+....+|+
T Consensus 122 ~~l~~~~~~ 130 (185)
T smart00534 122 HELTKLADE 130 (185)
T ss_pred HHHHHHhhc
Confidence 987666764
No 424
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.3e-10 Score=136.64 Aligned_cols=134 Identities=17% Similarity=0.202 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHH
Q 001505 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAG 1007 (1065)
Q Consensus 928 ~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~ 1007 (1065)
....+.+++.++++++.++|..++.+.+.+...+++..++++++|+.++|||.|.+|.|+||.++|.+.+-..++..+..
T Consensus 189 ~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~ 268 (716)
T KOG0058|consen 189 RACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSD 268 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHH
Confidence 44566777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHhhhHhhhhccccc
Q 001505 1008 LAFALIQLLSIIILMSQAAWQVFP---LFLVI-LGISIWYQARKLSISRIILFHVCHN 1061 (1065)
Q Consensus 1008 ~~~~~~~~l~~i~vi~~~~~~~~~---~~ipl-~~~~~~iq~~Yl~tsReL~~~~~~~ 1061 (1065)
.+.+.+++++.++.|+..+|.+.. +.+|+ +++..++.+||...||+++....++
T Consensus 269 ~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a 326 (716)
T KOG0058|consen 269 GLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARA 326 (716)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999743 34554 5566889999999999997765543
No 425
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.22 E-value=9.7e-11 Score=125.59 Aligned_cols=128 Identities=17% Similarity=0.158 Sum_probs=92.3
Q ss_pred CeEeeCC--cEEEEECCCCCChHHHHHHHh--CcccCCCCcEEEE--CCeEEEEecCCCCCC--CcHHHHHhcCcccchH
Q 001505 617 KMKIMKG--SKVAVCGSVGSGKSSLLSSIL--GEIPRISGAAIKV--HGKKAYVPQSSWIQT--GTIRENILFGKDMRQS 688 (1065)
Q Consensus 617 nl~i~~G--~~vaIvG~~GSGKSTLl~~Ll--Ge~~~~~G~i~~v--~g~iayv~Q~pwif~--gTIreNIlfG~~~d~~ 688 (1065)
++.+.++ .+++|+||+|+|||||++.+. +.+ ...|.. .. ..+++|..|.-.-++ .|+.++.
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~-v~a~~~~~~~~d~i~~~l~~~~si~~~~--------- 89 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSF-VPADSATIGLVDKIFTRMSSRESVSSGQ--------- 89 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCe-eEcCCcEEeeeeeeeeeeCCccChhhcc---------
Confidence 5666665 789999999999999999998 444 556765 22 346788887522111 1222211
Q ss_pred HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc
Q 001505 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL 768 (1065)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll 768 (1065)
-|. --+-||+++|++...+++++|||||++++|+..+..++...++.+.
T Consensus 90 ----------------------S~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~ 138 (213)
T cd03281 90 ----------------------SAF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLL 138 (213)
T ss_pred ----------------------chH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH
Confidence 000 3456999999999999999999999999999887777776776664
Q ss_pred C----CcEEEEEcCCcchhhcC
Q 001505 769 S----QKTVLYTTHQLEFLDAA 786 (1065)
Q Consensus 769 ~----~kTvIlVTH~l~~l~~a 786 (1065)
+ +.++|++||..+.+...
T Consensus 139 ~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 139 KRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred hcCCCCcEEEEEcChHHHHHhh
Confidence 3 24899999999887654
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.19 E-value=1.8e-11 Score=115.38 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=54.4
Q ss_pred ccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC-------------eEEEEecCCCCCCCcHHH
Q 001505 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG-------------KKAYVPQSSWIQTGTIRE 677 (1065)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g-------------~iayv~Q~pwif~gTIre 677 (1065)
++|++ ++++++|+.++|+||||||||||++++. +|++ .++| .++|+||+ +|.+||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i-~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKH-RLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeE-EEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 56788 9999999999999999999999999987 7887 7766 26788777 99999999
Q ss_pred HHhcC
Q 001505 678 NILFG 682 (1065)
Q Consensus 678 NIlfG 682 (1065)
||.+-
T Consensus 74 Ni~~~ 78 (107)
T cd00820 74 NIFLI 78 (107)
T ss_pred hceee
Confidence 99883
No 427
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.15 E-value=1.2e-10 Score=145.63 Aligned_cols=131 Identities=23% Similarity=0.245 Sum_probs=92.2
Q ss_pred CCeEeeCC-cEEEEECCCCCChHHHHHHHhCc-ccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHH
Q 001505 616 DKMKIMKG-SKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV 693 (1065)
Q Consensus 616 ~nl~i~~G-~~vaIvG~~GSGKSTLl~~LlGe-~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~v 693 (1065)
+++.+.+| +.++|+||+|+||||||+.+.|. +.+..|. |||..+.. .-.+.++|.. ..
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---------~Vpa~~~~-~~~~~d~i~~--~i-------- 373 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI---------PIPANEHS-EIPYFEEIFA--DI-------- 373 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------CccCCccc-cccchhheee--ec--------
Confidence 37888877 89999999999999999999998 4555662 22222110 0011222210 00
Q ss_pred HHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcE
Q 001505 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKT 772 (1065)
Q Consensus 694 l~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kT 772 (1065)
|++-.+.++-.++|+|++|+..+++++ .+++++|||||++++|+..+..+....+..+. ++.+
T Consensus 374 ---------------~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~ 437 (771)
T TIGR01069 374 ---------------GDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQ 437 (771)
T ss_pred ---------------ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 111123344567999999999999987 78999999999999999999887655554443 4789
Q ss_pred EEEEcCCcch
Q 001505 773 VLYTTHQLEF 782 (1065)
Q Consensus 773 vIlVTH~l~~ 782 (1065)
+|++||..+.
T Consensus 438 viitTH~~eL 447 (771)
T TIGR01069 438 VLITTHYKEL 447 (771)
T ss_pred EEEECChHHH
Confidence 9999999765
No 428
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.10 E-value=1.4e-10 Score=141.79 Aligned_cols=77 Identities=26% Similarity=0.275 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeC
Q 001505 719 INLSGGQKQRIQLARAVYSN----SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKD 794 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly~~----adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~ 794 (1065)
..||||||||++||||+... |+++|||||+++||+.+...+ .+.+..+.+++|||+|||+++....||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~-~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAI-AKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEE
Confidence 47999999999999999875 699999999999999998766 4567777678999999999999999999999987
Q ss_pred CE
Q 001505 795 GK 796 (1065)
Q Consensus 795 G~ 796 (1065)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 64
No 429
>PRK13695 putative NTPase; Provisional
Probab=99.10 E-value=1.1e-10 Score=121.35 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=97.4
Q ss_pred EEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHH
Q 001505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIE 704 (1065)
Q Consensus 625 ~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~ 704 (1065)
+++|+|++|||||||++.+.+++.+ .| + .+ .+|+.|+..- ++ + ..|-...+ . .. +-..-+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~-~~---~g~~~~~~~~-~~----~-~~~~~~~~--~----~~-~~~~~l~ 62 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-Y-KV---GGFYTEEVRE-GG----K-RIGFKIID--L----DT-GEEGILA 62 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-C-eE---EEEEcHHHHh-cC----C-ccceEEEE--c----CC-CCeEEcc
Confidence 6899999999999999999998765 56 3 33 4566664211 00 0 11111100 0 00 0000001
Q ss_pred hhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC--CCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcch
Q 001505 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDP--FSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEF 782 (1065)
Q Consensus 705 ~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp--~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~ 782 (1065)
....-....++.....+||+++-++.+++...++|+++++||| +..+|.+.. +.+.+++ ..++++|+|+|.-..
T Consensus 63 ~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~-~~l~~~~---~~~~~~i~v~h~~~~ 138 (174)
T PRK13695 63 RVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFV-KAVEEVL---DSEKPVIATLHRRSV 138 (174)
T ss_pred ccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHH-HHHHHHH---hCCCeEEEEECchhh
Confidence 1100012234555667999999999999999999999999995 444454432 2333333 247999999998555
Q ss_pred hhcCCEEEEEeCCEEEEe
Q 001505 783 LDAADLVLVMKDGKIEQS 800 (1065)
Q Consensus 783 l~~aD~Ilvl~~G~I~e~ 800 (1065)
-+.+|+|..+.+|+|.+.
T Consensus 139 ~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 139 HPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred HHHHHHHhccCCcEEEEE
Confidence 577999999999999876
No 430
>PRK10869 recombination and repair protein; Provisional
Probab=99.06 E-value=3.4e-10 Score=137.37 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEeCC
Q 001505 720 NLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMKDG 795 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~----~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~~G 795 (1065)
.|||||+|||+|||++.. +|+++|||||+++||..++..+. +.+..+-+++|+|+|||+++....||++++++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG-KLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 699999999999999996 58999999999999999988764 5677776789999999999999999999999875
Q ss_pred E
Q 001505 796 K 796 (1065)
Q Consensus 796 ~ 796 (1065)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
No 431
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.02 E-value=3e-10 Score=126.91 Aligned_cols=158 Identities=27% Similarity=0.387 Sum_probs=116.5
Q ss_pred eCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEE-----------CC-------------------eEEEEecCCCC
Q 001505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKV-----------HG-------------------KKAYVPQSSWI 670 (1065)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v-----------~g-------------------~iayv~Q~pwi 670 (1065)
++|+..+.||.+|-||||-++.++|.++|.-|.- .. .| +.-||.|-|-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 4799999999999999999999999999988853 11 11 23466666766
Q ss_pred CCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001505 671 QTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSA 750 (1065)
Q Consensus 671 f~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SA 750 (1065)
-.|++++++- +..+.+...++++.-+|..-++ .+ -..||||+-||-++|-|..+++|+|++|||-|-
T Consensus 177 ~k~~v~~~l~--~~~~r~~~~~~~~~~~L~~~~~-------re----~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 177 VKGTVGSLLD--RKDERDNKEEVCDQLDLNNLLD-------RE----VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHH--HHhhcccHHHHHHHHHHhhHHH-------hh----hhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 6777777763 2233344555555544432221 11 247999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CCEEEEEe
Q 001505 751 VDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-ADLVLVMK 793 (1065)
Q Consensus 751 LD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD~Ilvl~ 793 (1065)
||.+..-+- ...|+.++ .++=||+|-|.++.+.. .|.|.++-
T Consensus 244 LDVKQRLka-A~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 244 LDVKQRLKA-AITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhH-HHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 999875332 33456655 48999999999998765 67777764
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.01 E-value=3.2e-09 Score=133.46 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=92.4
Q ss_pred CeEeeC-CcEEEEECCCCCChHHHHHHHhCc-ccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHH
Q 001505 617 KMKIMK-GSKVAVCGSVGSGKSSLLSSILGE-IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVL 694 (1065)
Q Consensus 617 nl~i~~-G~~vaIvG~~GSGKSTLl~~LlGe-~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl 694 (1065)
++.+.. +..++|.||+++||||+|+.+... +-...|. |||-+.- ..-++-|+|..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~---------~vpa~~~-~~i~~~~~i~~------------- 376 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL---------PIPANEP-SEIPVFKEIFA------------- 376 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC---------CcccCCC-ccccccceEEE-------------
Confidence 566654 457899999999999999988532 1122221 2222100 01122233321
Q ss_pred HHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEE
Q 001505 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTV 773 (1065)
Q Consensus 695 ~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTv 773 (1065)
.-||..-+..+-.++|+|++|++.++|++ .+|+++|||||++++|+..+..+....+..+. ++.|+
T Consensus 377 ------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~v 443 (782)
T PRK00409 377 ------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKI 443 (782)
T ss_pred ------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 12444445566678999999999999999 89999999999999999998887665554443 47899
Q ss_pred EEEcCCcchhhcC
Q 001505 774 LYTTHQLEFLDAA 786 (1065)
Q Consensus 774 IlVTH~l~~l~~a 786 (1065)
|++||..+....+
T Consensus 444 IitTH~~el~~~~ 456 (782)
T PRK00409 444 IATTHYKELKALM 456 (782)
T ss_pred EEECChHHHHHHH
Confidence 9999998876543
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.99 E-value=9.1e-10 Score=118.48 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=87.1
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhC-cccCCCCcEEEECC--eEEEEecCCCCCCCcHHHHHhcCcccc
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGAAIKVHG--KKAYVPQSSWIQTGTIRENILFGKDMR 686 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlG-e~~~~~G~i~~v~g--~iayv~Q~pwif~gTIreNIlfG~~~d 686 (1065)
+++.+| ++.+++|++++|+||+|+||||+++.+.+ ++.+..|.. .... +++|.+|-- .....+|++.-|...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~-v~a~~~~~~~~~~i~--~~~~~~d~~~~~~St- 93 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF-VPASSATLSIFDSVL--TRMGASDSIQHGMST- 93 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE-EEcCceEEeccceEE--EEecCccccccccch-
Confidence 456666 88999999999999999999999999999 888888875 2221 344443321 011112222211110
Q ss_pred hHHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhh
Q 001505 687 QSFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG 766 (1065)
Q Consensus 687 ~~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ 766 (1065)
. ..+-+|++-.=.-..+++++|||||.++.|+..+..+....++.
T Consensus 94 --F---------------------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~ 138 (222)
T cd03287 94 --F---------------------------------MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHY 138 (222)
T ss_pred --H---------------------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHH
Confidence 0 11112221111123578999999998888877776665555555
Q ss_pred hcC--CcEEEEEcCCcchhhcC
Q 001505 767 LLS--QKTVLYTTHQLEFLDAA 786 (1065)
Q Consensus 767 ll~--~kTvIlVTH~l~~l~~a 786 (1065)
+.+ +.|+|++||..+.....
T Consensus 139 l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 139 LLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHhccCCeEEEEcccHHHHHHH
Confidence 443 67999999998875433
No 434
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.92 E-value=1.3e-09 Score=117.02 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCC-----CCCCHhHHHHHHHHHHhh
Q 001505 725 QKQRIQLARAVYSNSDVYIFDDPF-----SAVDAHTGTHLFKQCLMG 766 (1065)
Q Consensus 725 QKQRIaLARAly~~adIlLLDDp~-----SALD~~t~~~if~~~i~~ 766 (1065)
|++++.|||+++.+|++++||||| ++||+.+.+++.+ .+..
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~-~~~~ 202 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEK-ELQA 202 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHH-HHHH
Confidence 999999999999999999999999 9999999887754 4543
No 435
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=98.91 E-value=4e-08 Score=106.87 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 947 RAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAA 1026 (1065)
Q Consensus 947 ~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~ 1026 (1065)
..+.....+.+..+++++++++++++.|.+||+++++|+++||+++|++.+++.+...+..++......++.++++...+
T Consensus 61 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 140 (275)
T PF00664_consen 61 YFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFIS 140 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccc
Confidence 33334578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhh
Q 001505 1027 WQVFPLFLVILGISIWYQARKLSISRII 1054 (1065)
Q Consensus 1027 ~~~~~~~ipl~~~~~~iq~~Yl~tsReL 1054 (1065)
|++.++.+...++++++..++.+..++.
T Consensus 141 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 168 (275)
T PF00664_consen 141 WKLALILLIILPLLFLISFIFSKKIRKL 168 (275)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhHhhhhhhccccccc
Confidence 9988776655555555555555444444
No 436
>PRK01156 chromosome segregation protein; Provisional
Probab=98.85 E-value=5.1e-09 Score=135.56 Aligned_cols=76 Identities=26% Similarity=0.387 Sum_probs=64.5
Q ss_pred CCCCCCHHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC---C-cEEEEEcCCcchhhcC
Q 001505 717 RGINLSGGQKQRIQL------ARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS---Q-KTVLYTTHQLEFLDAA 786 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaL------ARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~---~-kTvIlVTH~l~~l~~a 786 (1065)
.+..||||||+|++| ||+++++|++++|||||++||+.....+. +.+...++ + .|+|+|||+.+++..|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~-~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLK-DIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 467899999999975 59999999999999999999999977664 34543332 2 5899999999999999
Q ss_pred CEEEEEe
Q 001505 787 DLVLVMK 793 (1065)
Q Consensus 787 D~Ilvl~ 793 (1065)
|+|+.++
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 437
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.83 E-value=1.2e-07 Score=119.82 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHH
Q 001505 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1065)
Q Consensus 929 ~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1065)
.+..++++.++..++..++...+...+.+...+++.++++++++.|++||+++++|.++||+++|++.++..+...+..+
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~ 282 (711)
T TIGR00958 203 AIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVL 282 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677778888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHhhhHhhhh
Q 001505 1009 AFALIQLLSIIILMSQAAWQVFPLF---LVI-LGISIWYQARKLSISRIILF 1056 (1065)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~~~---ipl-~~~~~~iq~~Yl~tsReL~~ 1056 (1065)
+..++.+++.++++...+|++.+++ +|+ +++..++++++.+.+++.+.
T Consensus 283 l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 334 (711)
T TIGR00958 283 LRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQE 334 (711)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998998998875443 333 23445566677666666543
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.82 E-value=3.2e-08 Score=103.54 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=87.8
Q ss_pred EEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHHh
Q 001505 626 VAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIEM 705 (1065)
Q Consensus 626 vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~~ 705 (1065)
+.|.||+|+|||+|...++-+.-. .|. ++.|++=+. | .+.+.+-++..+. |++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~------~v~~~s~e~-----~------------~~~~~~~~~~~g~--~~~~ 55 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGE------PGLYVTLEE-----S------------PEELIENAESLGW--DLER 55 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCC------cEEEEECCC-----C------------HHHHHHHHHHcCC--ChHH
Confidence 678999999999999877655432 232 344554211 1 1112111222222 2222
Q ss_pred h-cCCCCccccCCCCCCCHHHHH-----HHHHHHH-HccCCCEEEEeCCCCCCC---HhHHHHHHHHHHhhhc-CCcEEE
Q 001505 706 W-ADGDLSVVGERGINLSGGQKQ-----RIQLARA-VYSNSDVYIFDDPFSAVD---AHTGTHLFKQCLMGLL-SQKTVL 774 (1065)
Q Consensus 706 L-p~Gd~T~IGe~G~nLSGGQKQ-----RIaLARA-ly~~adIlLLDDp~SALD---~~t~~~if~~~i~~ll-~~kTvI 774 (1065)
+ ..|....+......+|+||+| +..+.++ .-.+|+++++|+|++.+| ......+ .+.++.+. .+.|+|
T Consensus 56 l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~~g~tvi 134 (187)
T cd01124 56 LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKRFGVTTL 134 (187)
T ss_pred HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHHCCCEEE
Confidence 2 234455566667788999999 3444444 457899999999999999 5444333 34444432 378999
Q ss_pred EEcCCcch---------h-hcCCEEEEEe
Q 001505 775 YTTHQLEF---------L-DAADLVLVMK 793 (1065)
Q Consensus 775 lVTH~l~~---------l-~~aD~Ilvl~ 793 (1065)
+++|.... + ..||.|+.|+
T Consensus 135 ~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 135 LTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 99998764 3 4489999987
No 439
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.81 E-value=2.4e-08 Score=120.05 Aligned_cols=137 Identities=25% Similarity=0.351 Sum_probs=100.3
Q ss_pred CCCcHHHHHhcCcccc--h---HHHHHHHHHhc-chHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCC--CEE
Q 001505 671 QTGTIRENILFGKDMR--Q---SFYEEVLEGCA-LNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS--DVY 742 (1065)
Q Consensus 671 f~gTIreNIlfG~~~d--~---~~y~~vl~ac~-L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~a--dIl 742 (1065)
...+|+|-.-|-+++. + +--+++++.-. --.++...--||.|. ...-.+||||+-|||-||+.+.+.= =+|
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 4567888887766553 1 11122222110 012344444567664 4456699999999999999999874 489
Q ss_pred EEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEEEe------CCEEEEecCHHHHHhh
Q 001505 743 IFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLVMK------DGKIEQSGKYEDLIAD 809 (1065)
Q Consensus 743 LLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilvl~------~G~I~e~Gt~~eL~~~ 809 (1065)
+||||..+|-+.--.++++ .++.+. .|.|+|+|-|+.+++..||+|+-|- .|+|+.+|+++|++++
T Consensus 506 VLDEPSIGLHqrDn~rLi~-tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIE-TLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred EecCCccCCChhhHHHHHH-HHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 9999999998876666654 455443 3899999999999999999999993 6899999999999983
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.79 E-value=4e-08 Score=106.77 Aligned_cols=145 Identities=25% Similarity=0.312 Sum_probs=81.8
Q ss_pred EeeCCcEEEEECCCCCChHHH-HHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHH-hcCcccchHHHHHHHHH
Q 001505 619 KIMKGSKVAVCGSVGSGKSSL-LSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEG 696 (1065)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTL-l~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNI-lfG~~~d~~~y~~vl~a 696 (1065)
-+++|+.+.|.|++||||||| ++.+.+..++ |. ++.|++.+- -...+.++. .+|.+.++ + ..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~------~~~yi~~e~--~~~~~~~~~~~~g~~~~~--~---~~- 83 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GY------SVSYVSTQL--TTTEFIKQMMSLGYDINK--K---LI- 83 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CC------cEEEEeCCC--CHHHHHHHHHHhCCchHH--H---hh-
Confidence 378999999999999999999 5777776553 32 245665321 111222222 22322111 0 00
Q ss_pred hcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCC----CHhHHHHHHHHHHhhhc
Q 001505 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYS----NSDVYIFDDPFSAV----DAHTGTHLFKQCLMGLL 768 (1065)
Q Consensus 697 c~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~----~adIlLLDDp~SAL----D~~t~~~if~~~i~~ll 768 (1065)
.|..-.+ +-...+|+++.++-.++|.+-. +|+++++|||++.+ |+...+.++ +.++.+.
T Consensus 84 -----------~~~l~~~-~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~ 150 (230)
T PRK08533 84 -----------SGKLLYI-PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRIS 150 (230)
T ss_pred -----------cCcEEEE-EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHH
Confidence 0110000 1012467777766666665544 69999999999999 666545453 4555553
Q ss_pred C-CcEEEEEcCCcchhh---------cCCEEEEEe
Q 001505 769 S-QKTVLYTTHQLEFLD---------AADLVLVMK 793 (1065)
Q Consensus 769 ~-~kTvIlVTH~l~~l~---------~aD~Ilvl~ 793 (1065)
+ ++|+++ ||+..... -||-|+.|+
T Consensus 151 ~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 151 SLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 3 666555 55544321 157777775
No 441
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.78 E-value=9.2e-08 Score=112.46 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=104.2
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeE----E-EEecCCCCCCCcHHHHHhcCcccc---hH
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKK----A-YVPQSSWIQTGTIRENILFGKDMR---QS 688 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~i----a-yv~Q~pwif~gTIreNIlfG~~~d---~~ 688 (1065)
-+++++|++++|+|++|+|||||++.|.|..++..|.| .+.|.- . +... .+-...++..|.+-.+.| -+
T Consensus 152 l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI-~~~Gerg~ev~e~~~~--~l~~~~l~r~v~vv~~~~~~~~~ 228 (438)
T PRK07721 152 LLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVI-ALIGERGREVREFIER--DLGPEGLKRSIVVVATSDQPALM 228 (438)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEE-EEEecCCccHHHHHHh--hcChhhhcCeEEEEECCCCCHHH
Confidence 58899999999999999999999999999999988866 543211 0 0000 011111333333332222 24
Q ss_pred HHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE-EEEeC--CCCCCCHhHHHHHHHHHHh
Q 001505 689 FYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDV-YIFDD--PFSAVDAHTGTHLFKQCLM 765 (1065)
Q Consensus 689 ~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adI-lLLDD--p~SALD~~t~~~if~~~i~ 765 (1065)
++..+.-+|...+-+.. .|.+-.+=-. +|+ | .|||.= +| +.+.| .++++|+.....+ -+.++
T Consensus 229 r~~~~~~a~~iAEyfr~--~g~~Vll~~D--slt-----r--~A~A~r---Eisl~~ge~P~~~G~dp~~~~~l-~~lle 293 (438)
T PRK07721 229 RIKGAYTATAIAEYFRD--QGLNVMLMMD--SVT-----R--VAMAQR---EIGLAVGEPPTTKGYTPSVFAIL-PKLLE 293 (438)
T ss_pred HHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChH-----H--HHHHHH---HHHHhcCCCCccccCCHHHHHHH-HHHHH
Confidence 66666666666665542 2443322111 011 1 111110 00 01234 4789999987654 44554
Q ss_pred hhc---CCc-----EEEEEcCCcchhhcCCEEEEEeCCEEEEecCHHH
Q 001505 766 GLL---SQK-----TVLYTTHQLEFLDAADLVLVMKDGKIEQSGKYED 805 (1065)
Q Consensus 766 ~ll---~~k-----TvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~e 805 (1065)
.+- +|. ||++.+|+++. +.||++.+|.||+|+.+++..+
T Consensus 294 r~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 294 RTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 443 465 99999999985 8899999999999999887543
No 442
>PRK03918 chromosome segregation protein; Provisional
Probab=98.77 E-value=1.4e-08 Score=131.54 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=63.6
Q ss_pred CCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhcCCEEEE
Q 001505 719 INLSGGQKQ------RIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDAADLVLV 791 (1065)
Q Consensus 719 ~nLSGGQKQ------RIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~aD~Ilv 791 (1065)
..||||||| |++|||++..+|+++||||||+++|+....++.+ .+..+. .+.|+|+|||+.++...||+|++
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~-~l~~~~~~~~~iiiith~~~~~~~~d~~~~ 865 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVD-IMERYLRKIPQVIIVSHDEELKDAADYVIR 865 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHhCCeEEE
Confidence 579999999 5666678999999999999999999999887754 565544 35799999999999999999999
Q ss_pred Ee
Q 001505 792 MK 793 (1065)
Q Consensus 792 l~ 793 (1065)
|+
T Consensus 866 l~ 867 (880)
T PRK03918 866 VS 867 (880)
T ss_pred EE
Confidence 97
No 443
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.70 E-value=2.6e-08 Score=105.74 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=79.8
Q ss_pred EEEEECCCCCChHHHHHHHhCcccCC-CCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHH
Q 001505 625 KVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDI 703 (1065)
Q Consensus 625 ~vaIvG~~GSGKSTLl~~LlGe~~~~-~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di 703 (1065)
++.|+||+||||||++++|++++++. .|.|+.+...+-|..+.. .|-.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~---------------------------~~~i---- 51 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK---------------------------RSLI---- 51 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc---------------------------ccee----
Confidence 78999999999999999999999854 455523332222221100 0000
Q ss_pred HhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchh
Q 001505 704 EMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFL 783 (1065)
Q Consensus 704 ~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l 783 (1065)
.+.++|.....++. ++++|+.++||++++||+. |.++.... ++....|++++.++|..+..
T Consensus 52 ------~q~~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 52 ------NQREVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSAA 112 (198)
T ss_pred ------eecccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcHH
Confidence 01223443333332 5899999999999999996 66654433 33445688999999999988
Q ss_pred hcCCEEEEEe
Q 001505 784 DAADLVLVMK 793 (1065)
Q Consensus 784 ~~aD~Ilvl~ 793 (1065)
...|+++.|-
T Consensus 113 ~~~~Rl~~l~ 122 (198)
T cd01131 113 KTIDRIIDVF 122 (198)
T ss_pred HHHhHHHhhc
Confidence 8899987774
No 444
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=3.9e-08 Score=128.94 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhh-c
Q 001505 718 GINLSGGQKQRIQLARAVYS----------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLD-A 785 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~----------~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~-~ 785 (1065)
-.+||||+++|++||+|+.. +|++++|||||++||+.+...++ ++|..+. .|+||++|||..++.. .
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~-~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAI-GILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 46899999999999999985 79999999999999999987765 4565543 4799999999999875 4
Q ss_pred CCEEEEEeCC
Q 001505 786 ADLVLVMKDG 795 (1065)
Q Consensus 786 aD~Ilvl~~G 795 (1065)
+|+|.|+++|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 8999999754
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.68 E-value=2e-08 Score=133.93 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=66.0
Q ss_pred CCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEE
Q 001505 717 RGINLSGGQKQRIQLARAV----YSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVM 792 (1065)
Q Consensus 717 ~G~nLSGGQKQRIaLARAl----y~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl 792 (1065)
....||||||||++||||+ +++|++||||||+++||+.....+ .++|..+.++.|+|+|||+++++..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~-~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERF-ANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHH-HHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4568999999999999998 578899999999999999987766 45777766778999999999999999999765
No 446
>PRK00064 recF recombination protein F; Reviewed
Probab=98.68 E-value=3.8e-08 Score=114.02 Aligned_cols=76 Identities=29% Similarity=0.337 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhc---C
Q 001505 719 INLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDA---A 786 (1065)
Q Consensus 719 ~nLSGGQKQRIaLARAly---------~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~---a 786 (1065)
..+|+|||++++||+++. .+|+|+|||||+|.||++..+.+++ .+... +.+++++||..+.++. .
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~-~l~~~--~~qv~it~~~~~~~~~~~~~ 348 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLE-RLKGL--GAQVFITTTDLEDLADLLEN 348 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHH-HHhcc--CCEEEEEcCChhhhhhhhcc
Confidence 589999999999999885 7999999999999999998877754 34322 4688999998776544 5
Q ss_pred CEEEEEeCCEE
Q 001505 787 DLVLVMKDGKI 797 (1065)
Q Consensus 787 D~Ilvl~~G~I 797 (1065)
++++.|++|+|
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 68999999998
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.67 E-value=3.4e-08 Score=112.02 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=94.4
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHH
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~a 696 (1065)
++.+++|+.++|+|++|||||||+++|++++++..|.+ .+....- +. +..+ ..
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv-~ied~~E-------l~---------~~~~----------~~ 190 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERII-TIEDTRE-------IF---------LPHP----------NY 190 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEE-EEcCccc-------cC---------CCCC----------CE
Confidence 35678999999999999999999999999999887755 4321000 00 0000 00
Q ss_pred hcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCC-cEEEE
Q 001505 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQ-KTVLY 775 (1065)
Q Consensus 697 c~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~-kTvIl 775 (1065)
+++... ++ +.| .++-...=.+++++..+||++++|||.+ .+. + +.++....+ .+++.
T Consensus 191 ~~l~~~----~~-------~~~---~~~~~~~~~l~~~Lr~~pd~ii~gE~r~---~e~----~-~~l~a~~~g~~~~i~ 248 (308)
T TIGR02788 191 VHLFYS----KG-------GQG---LAKVTPKDLLQSCLRMRPDRIILGELRG---DEA----F-DFIRAVNTGHPGSIT 248 (308)
T ss_pred EEEEec----CC-------CCC---cCccCHHHHHHHHhcCCCCeEEEeccCC---HHH----H-HHHHHHhcCCCeEEE
Confidence 011000 00 001 1111223367788999999999999996 222 2 234444344 46799
Q ss_pred EcCCcchhhcCCEEEEEeCCEEEEecCHHHHHh
Q 001505 776 TTHQLEFLDAADLVLVMKDGKIEQSGKYEDLIA 808 (1065)
Q Consensus 776 VTH~l~~l~~aD~Ilvl~~G~I~e~Gt~~eL~~ 808 (1065)
++|..+.....|++..|..|++...|...|.+.
T Consensus 249 T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 249 TLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred EEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 999999888899999999999998888777764
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.64 E-value=1.6e-07 Score=119.40 Aligned_cols=67 Identities=12% Similarity=0.254 Sum_probs=54.4
Q ss_pred HccCCCEEEEeCCCCCC-CHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchh----------hcCCEEEEEeCCEEEEecC
Q 001505 735 VYSNSDVYIFDDPFSAV-DAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFL----------DAADLVLVMKDGKIEQSGK 802 (1065)
Q Consensus 735 ly~~adIlLLDDp~SAL-D~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l----------~~aD~Ilvl~~G~I~e~Gt 802 (1065)
+..+|.++++|||+++| |+...+.+ .+.++... ++.++|++||+++.+ ..||..++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i-~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKI-REWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 46899999999999999 67776554 56665543 478999999999876 4799999999999877664
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.61 E-value=3.4e-07 Score=92.70 Aligned_cols=129 Identities=19% Similarity=0.136 Sum_probs=78.7
Q ss_pred EEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchHHHH
Q 001505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQDIE 704 (1065)
Q Consensus 625 ~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~di~ 704 (1065)
.++|+|++|+||||++..+++...+..| .+.|++++.-.- ..+++... ... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~-------~v~~~~~e~~~~--~~~~~~~~-----------------~~~--~ 52 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGG-------KVVYVDIEEEIE--ELTERLIG-----------------ESL--K 52 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCC-------EEEEEECCcchH--HHHHHHhh-----------------hhh--c
Confidence 3689999999999999999998866333 356666643211 11222100 000 0
Q ss_pred hhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC----------CHhHHHHHHHHHHhhhc-CCcEE
Q 001505 705 MWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAV----------DAHTGTHLFKQCLMGLL-SQKTV 773 (1065)
Q Consensus 705 ~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SAL----------D~~t~~~if~~~i~~ll-~~kTv 773 (1065)
.. .+....+......-+.++.++++.+++...+++++++||+++-+ |....+ .+.+...... .+.|+
T Consensus 53 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~v 130 (165)
T cd01120 53 GA-LDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDE-ELRELLERARKGGVTV 130 (165)
T ss_pred cc-cccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHH-HHHHHHHHHhcCCceE
Confidence 00 11122233333345567777899999999999999999999544 444433 3344333322 27899
Q ss_pred EEEcCCcchh
Q 001505 774 LYTTHQLEFL 783 (1065)
Q Consensus 774 IlVTH~l~~l 783 (1065)
|+++|.....
T Consensus 131 v~~~~~~~~~ 140 (165)
T cd01120 131 IFTLQVPSGD 140 (165)
T ss_pred EEEEecCCcc
Confidence 9999987543
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.61 E-value=9.3e-07 Score=86.24 Aligned_cols=119 Identities=28% Similarity=0.339 Sum_probs=83.4
Q ss_pred CCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHHhcchH
Q 001505 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEGCALNQ 701 (1065)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ac~L~~ 701 (1065)
+|..+.|+||+||||||++..|.+.+......++.++..... .......+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~----------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL-------EEVLDQLL----------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc-------ccCHHHHH-----------------------
Confidence 467899999999999999999999987655233244432211 11111111
Q ss_pred HHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHH------HHhhhcCCcEEEE
Q 001505 702 DIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQ------CLMGLLSQKTVLY 775 (1065)
Q Consensus 702 di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~------~i~~ll~~kTvIl 775 (1065)
....++......+++.++..+++|-+.+++++++||+....+.......... .......+..+|.
T Consensus 51 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 121 (148)
T smart00382 51 ---------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121 (148)
T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEE
Confidence 3334556678889999999999999999999999999999999887655421 1123345678888
Q ss_pred EcCC
Q 001505 776 TTHQ 779 (1065)
Q Consensus 776 VTH~ 779 (1065)
++|.
T Consensus 122 ~~~~ 125 (148)
T smart00382 122 TTND 125 (148)
T ss_pred EeCC
Confidence 8884
No 451
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.58 E-value=1.1e-07 Score=102.26 Aligned_cols=137 Identities=18% Similarity=0.196 Sum_probs=83.0
Q ss_pred cccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccC-CCCcEEEECCeEEEEecCCCCC-CCcHHHHHhcCcccch
Q 001505 611 TIKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPR-ISGAAIKVHGKKAYVPQSSWIQ-TGTIRENILFGKDMRQ 687 (1065)
Q Consensus 611 ~~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~-~~G~i~~v~g~iayv~Q~pwif-~gTIreNIlfG~~~d~ 687 (1065)
+++-+| ++.+++|++++|.||+|+||||+++.+.+..-. .-|. .+..+-+-++--.-|| .-.-+||+..|...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~--~vpa~~~~i~~~~~i~~~~~~~d~~~~~~St-- 92 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM--DVPAKSMRLSLVDRIFTRIGARDDIMKGEST-- 92 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC--ccCccccEeccccEEEEecCcccccccCcch--
Confidence 455566 888889999999999999999999988764221 1132 1211111111111111 12334444433211
Q ss_pred HHHHHHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh
Q 001505 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL 767 (1065)
Q Consensus 688 ~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l 767 (1065)
.+ .+-+|++-.=....+++++|||||.++.|+..+..+....++.+
T Consensus 93 -F~---------------------------------~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L 138 (218)
T cd03286 93 -FM---------------------------------VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYL 138 (218)
T ss_pred -HH---------------------------------HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHH
Confidence 01 11122211111125789999999999999999888877656655
Q ss_pred cC--CcEEEEEcCCcchhhc
Q 001505 768 LS--QKTVLYTTHQLEFLDA 785 (1065)
Q Consensus 768 l~--~kTvIlVTH~l~~l~~ 785 (1065)
.+ +.++|++||..+....
T Consensus 139 ~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 139 VKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHhcCCcEEEEeccHHHHHH
Confidence 54 7899999999887654
No 452
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.57 E-value=1.4e-07 Score=102.05 Aligned_cols=63 Identities=25% Similarity=0.353 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-CcEEEEEcCCcchh
Q 001505 720 NLSGGQKQRIQLARAVYSNS---DVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-QKTVLYTTHQLEFL 783 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~~a---dIlLLDDp~SALD~~t~~~if~~~i~~ll~-~kTvIlVTH~l~~l 783 (1065)
.+|.|+||.+.|+-+++..+ .++++|||-++|+|...+.++ +.+....+ +.-+|++||.+.++
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEeCccchhc
Confidence 45999999999999998776 899999999999999998887 55665555 78999999998775
No 453
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.57 E-value=2.7e-06 Score=104.94 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHH
Q 001505 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1065)
Q Consensus 929 ~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1065)
+.+.++++.+...++.+++.++....+.+....++..+++++++.|.++|+..+.|+++||+++|++.++..++..+..+
T Consensus 56 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 135 (571)
T TIGR02203 56 VPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVL 135 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 1009 AFALIQLLSIIILMSQAAWQVFPLFLVILGIS 1040 (1065)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~ 1040 (1065)
+..++.++..++++...+|++.++++.++++.
T Consensus 136 i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~ 167 (571)
T TIGR02203 136 VRETLTVIGLFIVLLYYSWQLTLIVVVMLPVL 167 (571)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999998876655444333
No 454
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.50 E-value=6e-06 Score=102.41 Aligned_cols=122 Identities=16% Similarity=0.289 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHH
Q 001505 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012 (1065)
Q Consensus 933 Y~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~ 1012 (1065)
++++.++..++..++.......+.+.+.+++.+++++++++|++||+..+.|+++||+++|++.++......+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666677777888889999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHhhhHhh
Q 001505 1013 IQLLSIIILMSQAAWQVFPL---FLVILG-ISIWYQARKLSISRII 1054 (1065)
Q Consensus 1013 ~~~l~~i~vi~~~~~~~~~~---~ipl~~-~~~~iq~~Yl~tsReL 1054 (1065)
+.+++.++++....|++.++ ++|+.+ +..+.++...+..|+.
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~ 196 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRV 196 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876543 334333 3334445445545544
No 455
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.50 E-value=1.6e-07 Score=125.35 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEEEEe
Q 001505 718 GINLSGGQKQRIQLARAVY----SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVLVMK 793 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly----~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Ilvl~ 793 (1065)
...||||||++++||+++. .+||+|+||||+++||+.....+ .+.+..+.++.++|+|||+...+..||+++.+.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~-~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERV-AKLIREKAGEAQFIVVSLRSPMIEYADRAIGVT 1150 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHH-HHHHHHhcCCCeEEEEECcHHHHHhcceeEeEE
Confidence 4579999999999999996 58899999999999999987655 456766666789999999999999999998774
No 456
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.50 E-value=5.1e-06 Score=105.21 Aligned_cols=177 Identities=15% Similarity=0.213 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhchhhhheeeccc-cCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 877 WTVYSAFITLVYKGALVPVILLCQVLFQALQMGSNYWIAWATDE-KRKVSR---EQLIGVFIFLSGGSSFFILGRAVLLA 952 (1065)
Q Consensus 877 ~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~-~~~~~~---~~~l~vY~~l~~~~~~~~~~~~~~~~ 952 (1065)
++-++.|++...+.. ..++++.++..++.++..+++....+. -+.... ..+...++++.+...++..++.++..
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555777776543222 222333344444555555555433321 011111 12233344445556677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1065)
Q Consensus 953 ~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~ 1032 (1065)
..+.+...+++.++++++++.|++||++.++|.++||++ |.+.+-..+...+...+..++.++..++++...+|++.++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 899999999999999999999999999999999999998 7777766666555555566666666666677777775543
Q ss_pred ---HHHH-HHHHHHHHHHHHhhhHhhhh
Q 001505 1033 ---FLVI-LGISIWYQARKLSISRIILF 1056 (1065)
Q Consensus 1033 ---~ipl-~~~~~~iq~~Yl~tsReL~~ 1056 (1065)
++|+ +++.+++++.+.+.+|+...
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 328 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQ 328 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343 33445567777776766643
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.48 E-value=1.4e-06 Score=95.06 Aligned_cols=148 Identities=20% Similarity=0.134 Sum_probs=88.2
Q ss_pred EeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHH-hcCcccchHHHHHHHHHh
Q 001505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYEEVLEGC 697 (1065)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNI-lfG~~~d~~~y~~vl~ac 697 (1065)
-+++|+.+.|.|++|||||+|...++-+.-. +| +++.|++.+--. ..+.+|. .||-+.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g------~~~~y~~~e~~~--~~~~~~~~~~g~~~~~~--------- 82 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QG------KKVYVITTENTS--KSYLKQMESVKIDISDF--------- 82 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CC------CEEEEEEcCCCH--HHHHHHHHHCCCChhHH---------
Confidence 3789999999999999999999998643211 23 356777763211 1222222 233221110
Q ss_pred cchHHHHhhcCCCCcccc---CCCCCCCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCH---hHHHHHHHHHHhhh-c
Q 001505 698 ALNQDIEMWADGDLSVVG---ERGINLSGGQKQRIQLARAVYS--NSDVYIFDDPFSAVDA---HTGTHLFKQCLMGL-L 768 (1065)
Q Consensus 698 ~L~~di~~Lp~Gd~T~IG---e~G~nLSGGQKQRIaLARAly~--~adIlLLDDp~SALD~---~t~~~if~~~i~~l-l 768 (1065)
+..|....+. ++....|.++++.+...+.... +|+++++|+|++.+|. +.-..+++ .++.+ .
T Consensus 83 --------~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~ 153 (234)
T PRK06067 83 --------FLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVD 153 (234)
T ss_pred --------HhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHh
Confidence 0111111111 1223457789999999999997 9999999999965443 32222222 23322 2
Q ss_pred CCcEEEEEcCCcchh--------hcCCEEEEEe
Q 001505 769 SQKTVLYTTHQLEFL--------DAADLVLVMK 793 (1065)
Q Consensus 769 ~~kTvIlVTH~l~~l--------~~aD~Ilvl~ 793 (1065)
+++|+++++|..... .-+|-++.|+
T Consensus 154 ~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 154 LGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 478999999986542 2256666665
No 458
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.48 E-value=6.4e-06 Score=102.08 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHH
Q 001505 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1065)
Q Consensus 929 ~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1065)
++.+++++.++..++..++.++....+.+....+..++++++++.|++||+..++|.++||+++|++.++..+...+..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~ 144 (588)
T PRK11174 65 PFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQM 144 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445555556666777777777888899999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 1009 AFALIQLLSIIILMSQAAWQVFPL 1032 (1065)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~~ 1032 (1065)
+..++..++.++++...+|++.++
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 145 ALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888876543
No 459
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.45 E-value=5.3e-08 Score=103.39 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=77.3
Q ss_pred EEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcH--HHHHh----cCcccchHHHHHHHHHhc
Q 001505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTI--RENIL----FGKDMRQSFYEEVLEGCA 698 (1065)
Q Consensus 625 ~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTI--reNIl----fG~~~d~~~y~~vl~ac~ 698 (1065)
+++|+|+.|||||||++.+++++++..|-. .+....++..|.+|+.+.++ +||+. -|.+....|++.+...|+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 81 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLA-VITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEA 81 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEE-EEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHH
Confidence 689999999999999999999988765533 45556666667777765542 44542 245666678888899999
Q ss_pred chHHHHhhcCCCCccccCCCCCCCHHH
Q 001505 699 LNQDIEMWADGDLSVVGERGINLSGGQ 725 (1065)
Q Consensus 699 L~~di~~Lp~Gd~T~IGe~G~nLSGGQ 725 (1065)
|.++++.+|++|.+.|+..|.++|.--
T Consensus 82 L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 82 VAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHHhcCCCCCEEEEECCCCCccccc
Confidence 999888889999999999998776554
No 460
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=8.1e-07 Score=103.80 Aligned_cols=153 Identities=19% Similarity=0.169 Sum_probs=107.0
Q ss_pred cccCCeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHH
Q 001505 613 KLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEE 692 (1065)
Q Consensus 613 ~L~~nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~ 692 (1065)
++++.+++.+|++++|+|++|+|||||++.|.|..++..|.+ +++.|.. .+++|.+..
T Consensus 146 aID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI-------~~iGerg----~ev~e~~~~----------- 203 (432)
T PRK06793 146 SIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI-------SLVGERG----REVKDFIRK----------- 203 (432)
T ss_pred EEeccceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE-------EeCCCCc----ccHHHHHHH-----------
Confidence 344479999999999999999999999999999998877644 3444443 455555421
Q ss_pred HHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHhHHHHHHHHHHh
Q 001505 693 VLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVY-------SNSDVYIFDDPFSAVDAHTGTHLFKQCLM 765 (1065)
Q Consensus 693 vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly-------~~adIlLLDDp~SALD~~t~~~if~~~i~ 765 (1065)
.+..-+++ .|.+=-.-.+-|.|+|+|++.+.+.. .++-++++||+|...|+.-+ | ...+.
T Consensus 204 ~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~re--i-sl~~~ 270 (432)
T PRK06793 204 ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRS--V-DIAVK 270 (432)
T ss_pred Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHH--H-HHHhc
Confidence 11111111 22222445678999999999988877 67889999999999999733 2 22332
Q ss_pred hhc-CCcEEEEEcCCcchhhcCCEEEEEeCCEEEEecCH
Q 001505 766 GLL-SQKTVLYTTHQLEFLDAADLVLVMKDGKIEQSGKY 803 (1065)
Q Consensus 766 ~ll-~~kTvIlVTH~l~~l~~aD~Ilvl~~G~I~e~Gt~ 803 (1065)
..- .|.|..+.||-.+.++.|-+ .++|.|+..++-
T Consensus 271 e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 271 ELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred CCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence 222 47888888996666777765 378999876653
No 461
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.44 E-value=9.1e-06 Score=99.44 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHH
Q 001505 937 SGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLL 1016 (1065)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l 1016 (1065)
.++..++.+++.++....+.+....++.++++++++.|.+||++.++|+++||+++|++.++..+...+..++..++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~ 142 (529)
T TIGR02868 63 GIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGS 142 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666667788899999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001505 1017 SIIILMSQAAWQVFPLFL 1034 (1065)
Q Consensus 1017 ~~i~vi~~~~~~~~~~~i 1034 (1065)
+.+++++...|++.++++
T Consensus 143 ~~~~~l~~~~~~l~l~~l 160 (529)
T TIGR02868 143 AAVAAIALLSVPAALVLA 160 (529)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 888888888888766543
No 462
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.42 E-value=8.2e-06 Score=100.18 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHH
Q 001505 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012 (1065)
Q Consensus 933 Y~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~ 1012 (1065)
++++.++..++.+++.++....+.+...+++.++++++++.|++||+..++|.++||+++|++.+...+. .+..++...
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~ 132 (547)
T PRK10522 54 FLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGI 132 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 3334444445556677777788999999999999999999999999999999999999999999987654 466677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001505 1013 IQLLSIIILMSQAAWQVFPLFL 1034 (1065)
Q Consensus 1013 ~~~l~~i~vi~~~~~~~~~~~i 1034 (1065)
+.+++.++++...+|++.++++
T Consensus 133 ~~~i~~~~~l~~~~~~l~li~l 154 (547)
T PRK10522 133 ILTLGSAAYLAWLSPKMLLVTA 154 (547)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 8888888888888888766543
No 463
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.42 E-value=1.1e-05 Score=102.40 Aligned_cols=125 Identities=16% Similarity=0.132 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHH
Q 001505 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1065)
Q Consensus 929 ~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1065)
+...++++.++..++..++.++....+.+....++.++++++++.|++||+..++|.++||++.| +.+...+...+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~ 274 (710)
T TIGR03796 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATT 274 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHH
Confidence 34455555666777888888888899999999999999999999999999999999999999998 56777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhHhh
Q 001505 1009 AFALIQLLSIIILMSQAAWQVFPLFLVIL----GISIWYQARKLSISRII 1054 (1065)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~~~ipl~----~~~~~iq~~Yl~tsReL 1054 (1065)
+..++.+++.++++...+|++.++++.++ ++..++++.+.+..++.
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~ 324 (710)
T TIGR03796 275 ALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRL 324 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888765543322 23344555555555444
No 464
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.41 E-value=1e-05 Score=99.48 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHH
Q 001505 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011 (1065)
Q Consensus 932 vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~ 1011 (1065)
.++++.++..++.++..++....+.+....++.++++++++.|++||++.++|++++|+++|++.++..+. .+..++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~ 136 (555)
T TIGR01194 58 SFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIA 136 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHH
Confidence 35555666667777777777888999999999999999999999999999999999999999999998775 46677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001505 1012 LIQLLSIIILMSQAAWQVFPLFL 1034 (1065)
Q Consensus 1012 ~~~~l~~i~vi~~~~~~~~~~~i 1034 (1065)
++.+++.+++++...|.+.++++
T Consensus 137 ~~~~~~~~~~l~~~~~~L~li~l 159 (555)
T TIGR01194 137 LAIFFFCIAYLAYLSVPMFAITI 159 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 77788888888888888766543
No 465
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.38 E-value=1.5e-05 Score=100.69 Aligned_cols=104 Identities=11% Similarity=0.103 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHH
Q 001505 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1065)
Q Consensus 929 ~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1065)
+..+++++.++..++..++.++....+.+....++.++++++++.|++||+..++|.+++|+ +|++.+...+...+..+
T Consensus 181 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~ 259 (694)
T TIGR01846 181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTV 259 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 34455556666777888888888899999999999999999999999999999999999999 69999998888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 1009 AFALIQLLSIIILMSQAAWQVFPLF 1033 (1065)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~~~ 1033 (1065)
+..++.++..++++...+|++.+++
T Consensus 260 ~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 260 VLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666777788888776543
No 466
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.37 E-value=6.1e-07 Score=117.31 Aligned_cols=75 Identities=27% Similarity=0.273 Sum_probs=61.4
Q ss_pred CCCCCHHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc-CC
Q 001505 718 GINLSGGQKQRIQLARAVYS--------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA-AD 787 (1065)
Q Consensus 718 G~nLSGGQKQRIaLARAly~--------~adIlLLDDp~SALD~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~-aD 787 (1065)
-.+|||||++|++||||+.. +|++++|||||++||+.+...+. +.+..+. .|+||++|||-.++... ..
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~-~~l~~l~~~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTAL-DALDALNASGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEecHHHHHHhccc
Confidence 46899999999999999995 89999999999999999987665 5676653 58999999997666555 44
Q ss_pred EEEEEe
Q 001505 788 LVLVMK 793 (1065)
Q Consensus 788 ~Ilvl~ 793 (1065)
+|.|-.
T Consensus 1026 qi~V~k 1031 (1047)
T PRK10246 1026 QIKVKK 1031 (1047)
T ss_pred eEEEEE
Confidence 555554
No 467
>PRK02224 chromosome segregation protein; Provisional
Probab=98.37 E-value=5.6e-07 Score=116.70 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=62.5
Q ss_pred CCCCHHHHH------HHHHHHHHccC------CCEEEEeCCCCCCCHhHHHHHHHHHHhhhcC-C-cEEEEEcCCcchhh
Q 001505 719 INLSGGQKQ------RIQLARAVYSN------SDVYIFDDPFSAVDAHTGTHLFKQCLMGLLS-Q-KTVLYTTHQLEFLD 784 (1065)
Q Consensus 719 ~nLSGGQKQ------RIaLARAly~~------adIlLLDDp~SALD~~t~~~if~~~i~~ll~-~-kTvIlVTH~l~~l~ 784 (1065)
..||||||| |+++||++..+ ++++||||||+++|+.....+. +.+..+.. + .++|+|||+.+++.
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~-~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLV-DLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHH-HHHHHHHhcCCCeEEEEECChHHHH
Confidence 489999999 99999999863 3689999999999999877765 45544432 3 48999999999999
Q ss_pred cCCEEEEEeC
Q 001505 785 AADLVLVMKD 794 (1065)
Q Consensus 785 ~aD~Ilvl~~ 794 (1065)
.||+++.|..
T Consensus 859 ~ad~~~~~~~ 868 (880)
T PRK02224 859 AADDLVRVEK 868 (880)
T ss_pred hcCeeEEeec
Confidence 9999999964
No 468
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.36 E-value=2.1e-05 Score=97.32 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 953 TIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPL 1032 (1065)
Q Consensus 953 ~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~ 1032 (1065)
..+.+....+.+++++++++.|++||+.+++|.+++|+++|++.+.......+..++..++.++..++++...+|++.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 161 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIV 161 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566699999999999999999999999999999999998888777777777777777777888888887665
Q ss_pred HHHHHHHHHH
Q 001505 1033 FLVILGISIW 1042 (1065)
Q Consensus 1033 ~ipl~~~~~~ 1042 (1065)
++.++.++.+
T Consensus 162 ~l~~~~~~~~ 171 (585)
T TIGR01192 162 LMVLGILYIL 171 (585)
T ss_pred HHHHHHHHHH
Confidence 4433333333
No 469
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.36 E-value=1.5e-05 Score=97.47 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHH
Q 001505 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1065)
Q Consensus 929 ~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1065)
+.+.+++++++..++..++.+.....+.+...+++.++++++++.|.+||+..++|+++||+++|++.++..+...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45556666677777788888888889999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001505 1009 AFALIQLLSIIILMSQAAWQVFP 1031 (1065)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~ 1031 (1065)
+...+.++..++++...+|++.+
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~ 148 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGL 148 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 88888888888888888887544
No 470
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.35 E-value=2.1e-05 Score=97.21 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHH
Q 001505 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1065)
Q Consensus 930 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1065)
+..++++.+...++.+++.++....+.+....++..+++++++.|.++|+....|+++||+++|++.++......+..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~ 140 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMAL 140 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566677777778888999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHhhh
Q 001505 1010 FALIQLLSIIILMSQAAWQVFPLF---LVILG-ISIWYQARKLSISRIIL 1055 (1065)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~---ipl~~-~~~~iq~~Yl~tsReL~ 1055 (1065)
..++.+++.++++....|++.+++ +|+.+ +..+..+.+.+.+++..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 190 (576)
T TIGR02204 141 RNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQ 190 (576)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888865433 34332 33445566666666554
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.35 E-value=4.7e-07 Score=104.33 Aligned_cols=125 Identities=21% Similarity=0.242 Sum_probs=82.7
Q ss_pred eEeeCCcEEEEECCCCCChHHHHHHHhCcccCC-CCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHHH
Q 001505 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRI-SGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLEG 696 (1065)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~-~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~a 696 (1065)
+..+++..+.|+||+||||||+++++++++++. .|.|+.+...+-|. .+.. .
T Consensus 117 ~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~------------------~~~~---------~ 169 (343)
T TIGR01420 117 LAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV------------------HRNK---------R 169 (343)
T ss_pred HHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh------------------ccCc---------c
Confidence 445678999999999999999999999988753 45552221111110 0000 0
Q ss_pred hcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEE
Q 001505 697 CALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYT 776 (1065)
Q Consensus 697 c~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlV 776 (1065)
|- + .+.++|..+.+ -.=+|++|+-++||++++||+. |+++....++ ....|.+++.+
T Consensus 170 ~~----i------~q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T 226 (343)
T TIGR01420 170 SL----I------NQREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGT 226 (343)
T ss_pred ce----E------EccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEE
Confidence 00 0 01234433322 2335888999999999999997 9888765443 34568899999
Q ss_pred cCCcchhhcCCEEEEE
Q 001505 777 THQLEFLDAADLVLVM 792 (1065)
Q Consensus 777 TH~l~~l~~aD~Ilvl 792 (1065)
.|..+.....|+++-|
T Consensus 227 ~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 227 LHTNSAAQTIERIIDV 242 (343)
T ss_pred EcCCCHHHHHHHHHHh
Confidence 9998888777887655
No 472
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.35 E-value=2.6e-05 Score=96.69 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhchhhhheeecccc-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 001505 896 ILLCQVLFQALQMGSNYWIAWATDEK-RKVSREQLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAP 974 (1065)
Q Consensus 896 ~~~~~~~~~~~~~~~~~Wl~~~~~~~-~~~~~~~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aP 974 (1065)
++++.++..++..+..+++.+-.+.- +......++.++++++++..+..++..........+....+..++++++++.|
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 103 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLP 103 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444555555666566665333211 11111222333333333333333323322233334444455569999999999
Q ss_pred cccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Q 001505 975 ISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQAAWQVFPLFLVILGISIWYQARKLSISRII 1054 (1065)
Q Consensus 975 msFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~iq~~Yl~tsReL 1054 (1065)
.++|+..+.|++++|+++|++.+.......+..++..++..+..++++...+|++.++++.++++++.+..++.+-.++.
T Consensus 104 ~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~ 183 (588)
T PRK13657 104 LAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDG 183 (588)
T ss_pred HHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887777777777777777777777778888776655444444444444444444443
No 473
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.34 E-value=2.1e-05 Score=97.11 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHH
Q 001505 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012 (1065)
Q Consensus 933 Y~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~ 1012 (1065)
..+++++..++.++..++....+.+....++.++++++++.|++||+..++|.+++|+++|++.++..+...+..++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666677788999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001505 1013 IQLLSIIILMSQAAWQVFPLF 1033 (1065)
Q Consensus 1013 ~~~l~~i~vi~~~~~~~~~~~ 1033 (1065)
+.+++.+++++...|++.+++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~ 166 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTL 166 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999898876543
No 474
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.33 E-value=3e-06 Score=97.32 Aligned_cols=157 Identities=22% Similarity=0.280 Sum_probs=109.8
Q ss_pred eEeeCCcEEEEECCCCCChHHHHHHH-hCcccCCCCcEEEECCeEEEEec-CCCCCCCcHHHHHhcCcccchHHHHHHHH
Q 001505 618 MKIMKGSKVAVCGSVGSGKSSLLSSI-LGEIPRISGAAIKVHGKKAYVPQ-SSWIQTGTIRENILFGKDMRQSFYEEVLE 695 (1065)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLl~~L-lGe~~~~~G~i~~v~g~iayv~Q-~pwif~gTIreNIlfG~~~d~~~y~~vl~ 695 (1065)
+-||+| ++.|||..--||||||++| .|-|+...|. |+=-.|.- ++. .| +.+--+.++
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGD-----GRE~VVT~~~av----ki-----------rAEDGR~V~ 298 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGD-----GREFVVTDPDAV----KI-----------RAEDGRSVE 298 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCC-----CceEEEECCCce----EE-----------EecCCceEe
Confidence 779999 9999999999999999999 5778876663 21111110 000 00 001123455
Q ss_pred HhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHH-----------
Q 001505 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL----------- 764 (1065)
Q Consensus 696 ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i----------- 764 (1065)
.+.+..+|..||.|.+|. --.-.|=||---|=-+|..|+-..++++|+||=|||-.--.....+++++
T Consensus 299 ~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfi 377 (448)
T PF09818_consen 299 GVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFI 377 (448)
T ss_pred CccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHH
Confidence 677889999999999987 33345779999999999999999999999999999974444333333333
Q ss_pred ---hhhc--CCcEEEEEcCC-cchhhcCCEEEEEeCCE
Q 001505 765 ---MGLL--SQKTVLYTTHQ-LEFLDAADLVLVMKDGK 796 (1065)
Q Consensus 765 ---~~ll--~~kTvIlVTH~-l~~l~~aD~Ilvl~~G~ 796 (1065)
+.+. .|-++|+|+-- =+++..||+|++|++=+
T Consensus 378 drvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 378 DRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred HHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCcc
Confidence 2221 25555555544 46899999999999754
No 475
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.32 E-value=2.3e-05 Score=99.01 Aligned_cols=126 Identities=14% Similarity=0.225 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHH
Q 001505 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1065)
Q Consensus 929 ~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1065)
+..+++++.++..++.+++.+.....+.+...+++.++++++++.|++||+..++|.++||++ |.+.++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~ 256 (686)
T TIGR03797 178 IALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTT 256 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 345566666667778888888888999999999999999999999999999999999999997 7899988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHhhhHhhh
Q 001505 1009 AFALIQLLSIIILMSQAAWQVFPLFL---VI-LGISIWYQARKLSISRIIL 1055 (1065)
Q Consensus 1009 ~~~~~~~l~~i~vi~~~~~~~~~~~i---pl-~~~~~~iq~~Yl~tsReL~ 1055 (1065)
+...+.++..++++...+|++.++++ |+ +++..+.++.+.+..++.+
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (686)
T TIGR03797 257 LLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLL 307 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666677777777888887765433 22 2234455665555555553
No 476
>PRK12369 putative transporter; Reviewed
Probab=98.30 E-value=0.0075 Score=68.93 Aligned_cols=223 Identities=14% Similarity=0.041 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh--
Q 001505 338 WYFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLG-- 414 (1065)
Q Consensus 338 ~~~~~~r~~~~iR~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg-- 414 (1065)
..|..++++.+.|..|+....++=+..+..-.++- .+++.|++++.+... ....+...++.++.-+.+||..-|
T Consensus 83 ~~~~~~~l~i~WR~wLT~~~l~~wl~~~~~iDNPD---QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l 159 (326)
T PRK12369 83 VDYFASHYAFRWREAMTFSYLKFWRNKRDNIEGSS---QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGV 159 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45567889999999999999999887543211221 578889998876553 445666666777666777776322
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHhhHHHHHHhchH-HHHHHHHH
Q 001505 415 ---------AAPAFAALFSTIFVMVSNTPLANRQERFHSM-IMEAKDARIKATS--ETLKSMRVLKLLSWE-QEFLKKLL 481 (1065)
Q Consensus 415 ---------~~~~l~~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~~d~R~~~~~--E~L~~ir~IK~~~wE-~~f~~~i~ 481 (1065)
.....++++-.++...+...++++..+...+ ....-|=|-.++. |.-.+ | -| +...++..
T Consensus 160 ~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~------~-~E~~~l~~~f~ 232 (326)
T PRK12369 160 SLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN------Y-AKPETLIELFT 232 (326)
T ss_pred eeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh------h-hhHHHHHHHHH
Confidence 0222222333333333444455443332222 2222344443332 11111 1 12 23344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 482 RLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKV 561 (1065)
Q Consensus 482 ~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~v 561 (1065)
+.++.-.+..++...............+++-.++ .+-.+..++++.|.+..+...|+.++..+..+.+....+.+-.+
T Consensus 233 ~v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li--~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A 310 (326)
T PRK12369 233 GLRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLI--MAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRS 310 (326)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333333333333332222222221121 22234577899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 001505 562 SLYRIQEFIKE 572 (1065)
Q Consensus 562 s~~RI~~fL~~ 572 (1065)
..+|+.+|.+.
T Consensus 311 ~~~RL~~f~~~ 321 (326)
T PRK12369 311 IYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 477
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.28 E-value=1.9e-06 Score=98.96 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeeeEEEecccccccCCCccccc-----------C-CeEee
Q 001505 554 SMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAGEYAWDAREENFKKPTIKLT-----------D-KMKIM 621 (1065)
Q Consensus 554 ~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~sfsw~~~~~~~~~~~~~L~-----------~-nl~i~ 621 (1065)
..-.++..+.+|+.+.++.+..... +.....+.++|+|++|.||++ .++|+ | ++.|.
T Consensus 98 ~g~~R~~~~~ER~~~Ll~v~~vn~~----~~e~~~~ri~Fe~LTf~YP~e-------r~~Le~~~~~~~~R~id~~~pig 166 (415)
T TIGR00767 98 EGQIRSPKEGERYFALLKVESVNGD----DPEKAKNRVLFENLTPLYPNE-------RLRLETSTEDLSTRVLDLFAPIG 166 (415)
T ss_pred EEEEeccccHhHHHHHhCCCccCCC----CccccCCCeEEEEeeecCCCc-------cceeecCccccceeeeeeEEEeC
Confidence 3334566788999999987652111 112234679999999999875 35564 5 89999
Q ss_pred CCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCC
Q 001505 622 KGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSS 668 (1065)
Q Consensus 622 ~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~p 668 (1065)
+|+.++|+||+|+|||||++.|.+.+....-.+ .+ +.++.+++
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv-~v---~VlLIgER 209 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEV-EL---IVLLIDER 209 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCce-EE---EEEEcCCC
Confidence 999999999999999999999999886542222 21 55666553
No 478
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.28 E-value=6.2e-07 Score=104.40 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=42.4
Q ss_pred ccccC-CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCC-cEEEECCeEE
Q 001505 612 IKLTD-KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISG-AAIKVHGKKA 662 (1065)
Q Consensus 612 ~~L~~-nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G-~i~~v~g~ia 662 (1065)
.+|++ |+++++||+++|||||||||||||+ .|...|.+| +| .++|+-.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I-~ldg~~~ 69 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEF-FLDATHS 69 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEE-EECCEEC
Confidence 57888 9999999999999999999999999 677888888 58 8988543
No 479
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=1.3e-06 Score=101.18 Aligned_cols=62 Identities=26% Similarity=0.280 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhh
Q 001505 720 NLSGGQKQRIQLARAVYS---------NSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLD 784 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly~---------~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~ 784 (1065)
.+|.|||+++.||.++.+ +|+|+|||||+|.||++..+.+++ .+... +.+++++||+.+.++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~-~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAE-LLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHH-HHhhc--CCEEEEEecChhhcc
Confidence 589999999999999999 999999999999999998776654 34322 579999999987654
No 480
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.22 E-value=6.3e-05 Score=93.18 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHHH
Q 001505 933 FIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFAL 1012 (1065)
Q Consensus 933 Y~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~~ 1012 (1065)
+++++++..++..++.+.....+.+....++.++++++++.|.++|+....|.+++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666766777788899999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHhh
Q 001505 1013 IQLLSIIILMSQAAWQVFPLFL---VIL-GISIWYQARKLSISRII 1054 (1065)
Q Consensus 1013 ~~~l~~i~vi~~~~~~~~~~~i---pl~-~~~~~iq~~Yl~tsReL 1054 (1065)
+.+++.++++...+|++.++++ |+. ++..+.++.+.+..++.
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~ 196 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNM 196 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888655433 322 22344555555555554
No 481
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.19 E-value=0.0043 Score=66.35 Aligned_cols=179 Identities=17% Similarity=0.153 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 266 PQVIIHAVWKSLALNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRI 345 (1065)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 345 (1065)
++.++|.+++.+..+..+-+...++..+.|++++.-||.+-+++. .. ...++...++...+. ...+. .-.|.
T Consensus 1 Lk~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~---~~-~~~~~~~~l~~~~ig-aaRR~---~DTRv 72 (237)
T PF13748_consen 1 LKAIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDV---WQ-ALMYAALVLLMWAIG-AARRI---YDTRV 72 (237)
T ss_pred ChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH---HH-HHHHHHHHHHHHHHh-hhhHH---HhhHH
Confidence 367899999999999999999999999999999999998876542 22 333333333222222 22222 24577
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001505 346 GIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFS 424 (1065)
Q Consensus 346 ~~~iR~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~ 424 (1065)
..|++..+...++.+.-+ ...+.+++..+++ =...+.||+. .++.+.++.++++.+.++|...-- +..++++++
T Consensus 73 f~rIy~~la~~vi~~qr~---~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~-~~g~~~l~~ 147 (237)
T PF13748_consen 73 FSRIYAELAVPVILSQRQ---QGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEF-WLGLACLLI 147 (237)
T ss_pred HHHHHHHHhHHHHHHHHH---hCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 889999998887766531 2236667777653 2334555554 577788889999888877664333 555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 425 TIFVMVSNTPLANRQERFHSMIMEAKDARIKAT 457 (1065)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~ 457 (1065)
++++..+...++++..+...+.+...+++++.+
T Consensus 148 l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i 180 (237)
T PF13748_consen 148 LALFLLILPRFARRNYRLYRRLNNRLEKEVDII 180 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHh
Confidence 666666777777777777777666666555443
No 482
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.17 E-value=8.5e-05 Score=93.96 Aligned_cols=123 Identities=8% Similarity=-0.028 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHHHH
Q 001505 932 VFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLAFA 1011 (1065)
Q Consensus 932 vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~~~ 1011 (1065)
+++++.++..++..++.++....+.+....+..++++++++.|++| +..++|.+++|+ +|++.+...+...+...+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~ 269 (694)
T TIGR03375 192 GVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALID 269 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHH
Confidence 3444455566777788888889999999999999999999999998 789999999999 79999999888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHhhhh
Q 001505 1012 LIQLLSIIILMSQAAWQVFPLF---LVIL-GISIWYQARKLSISRIILF 1056 (1065)
Q Consensus 1012 ~~~~l~~i~vi~~~~~~~~~~~---ipl~-~~~~~iq~~Yl~tsReL~~ 1056 (1065)
++.++..++++...+|++.++. +|+. ++.+++++.+.+.+++...
T Consensus 270 ~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 318 (694)
T TIGR03375 270 LPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMR 318 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777888765433 3332 3345567777666666543
No 483
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.17 E-value=6.2e-05 Score=92.93 Aligned_cols=106 Identities=18% Similarity=0.335 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHH
Q 001505 928 QLIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAG 1007 (1065)
Q Consensus 928 ~~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~ 1007 (1065)
.++..++++.++..++.++..+.....+.+....++.++++.+++.|++|||.+++|.+++|+++|++.++..+......
T Consensus 53 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~ 132 (567)
T COG1132 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVL 132 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHH
Confidence 34445555555566666666666677779999999999999999999999999999999999999999999999888665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 1008 LAFALIQLLSIIILMSQAAWQVFPLF 1033 (1065)
Q Consensus 1008 ~~~~~~~~l~~i~vi~~~~~~~~~~~ 1033 (1065)
+....+.+++.++++....|.+.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~l~~ 158 (567)
T COG1132 133 VFTSILLLIGSLVLLFSLSWRLALIL 158 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 66577888888888888888765543
No 484
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.17 E-value=3.6e-06 Score=92.15 Aligned_cols=128 Identities=23% Similarity=0.340 Sum_probs=71.8
Q ss_pred CcEEEEECCCCCChHHHHHHHhCccc---CCCC---cEEEECCeEEEEecCCCCCCCcHHHHHhcCcccc--hHHHHHHH
Q 001505 623 GSKVAVCGSVGSGKSSLLSSILGEIP---RISG---AAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMR--QSFYEEVL 694 (1065)
Q Consensus 623 G~~vaIvG~~GSGKSTLl~~LlGe~~---~~~G---~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d--~~~y~~vl 694 (1065)
|...+|+||.|+|||+|...+.=-+- +.-| .+ .-.|++-|++=| .+.+ .+|.+++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~-~~~~~Vlyi~~E---------------d~~~~i~~Rl~~i~ 64 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKV-TEPGRVVYLSAE---------------DPREEIHRRLEAIL 64 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCcccc-CCCceEEEEECC---------------CCHHHHHHHHHHHH
Confidence 67889999999999999987752110 1111 01 123455565421 0111 22334444
Q ss_pred HHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHH----------------HHccCCCEEEEeCCCCC------CC
Q 001505 695 EGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLAR----------------AVYSNSDVYIFDDPFSA------VD 752 (1065)
Q Consensus 695 ~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLAR----------------Aly~~adIlLLDDp~SA------LD 752 (1065)
+.+++.+ +++ + .-..+|+.|++.+++ +...+|+++++| |+++ .|
T Consensus 65 ~~~~~~~----~~~--------r-l~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d 130 (239)
T cd01125 65 QHLEPDD----AGD--------R-LFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSEND 130 (239)
T ss_pred hhcCCcC----ccc--------c-eEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCC
Confidence 4333211 110 0 111245666666554 446799999999 8875 58
Q ss_pred HhHHHHHHHHHHhhhc--CCcEEEEEcCCcc
Q 001505 753 AHTGTHLFKQCLMGLL--SQKTVLYTTHQLE 781 (1065)
Q Consensus 753 ~~t~~~if~~~i~~ll--~~kTvIlVTH~l~ 781 (1065)
+.....+++ .+..+. .+.|+|+++|...
T Consensus 131 ~~~~~~~~~-~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 131 NGAMDAVIK-ALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHHHHHH-HHHHHHHHhCCEEEEEeccCc
Confidence 877666654 344433 3789999999753
No 485
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.13 E-value=0.026 Score=66.02 Aligned_cols=223 Identities=10% Similarity=0.006 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhH-
Q 001505 339 YFGANRIGIRVRSALTVLIYKRSMAIKFAGPSSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAA- 416 (1065)
Q Consensus 339 ~~~~~r~~~~iR~~L~~~iy~K~L~ls~~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~- 416 (1065)
.|..+++..|.|..|+....++=++++.-+ + .=.+++.|++++.+... ....+..+++.++.-+.+||..-|..
T Consensus 159 ~~~~~~l~irWR~wLT~~yl~~Wl~~r~ie-n---PDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~ 234 (409)
T PRK11098 159 NFFVSHYVFRWRTAMNEYYMAHWQKLRHIE-G---AAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVP 234 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C---ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445678889999999998888766654211 1 34577889888866543 34555666666666666777633310
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHhchHH-HHHHHHHHH
Q 001505 417 -----------PAFAALFSTIFVMVSNTPLANRQERFHSMIM-EAKDARIKATSETLKSMRVLKLLSWEQ-EFLKKLLRL 483 (1065)
Q Consensus 417 -----------~~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~~d~R~~~~~E~L~~ir~IK~~~wE~-~f~~~i~~~ 483 (1065)
...++++-.++...+...++++..+..-+.. ..-|=|-.++. .=.+-. .-|+ ...++..+.
T Consensus 235 ~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVr-vrenaE-----~~E~~~L~~~F~~V 308 (409)
T PRK11098 235 ELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVY-GEDDAD-----RATPPTVRELFSNV 308 (409)
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhH-hhhhhh-----HHHHHHHHHHHHHH
Confidence 1122222222333333344444333222211 22233333321 000111 1132 344444454
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 484 REIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGVCILLKTPLTSGAVLSALATFRILQEPIYNLPELISMIAQTKVSL 563 (1065)
Q Consensus 484 R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~ 563 (1065)
|+.-.+..+...+.............++-.++ .+-.+..+++|.|.+..+...|..++..+..+.+....+.+-....
T Consensus 309 ~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv--~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~ 386 (409)
T PRK11098 309 RKNYFRLYFHYMYFNIARILYLQVDNVFGLFL--LFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIY 386 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333333333332222222221111 1222356789999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 001505 564 YRIQEFIKED 573 (1065)
Q Consensus 564 ~RI~~fL~~~ 573 (1065)
+|+.+|.+.-
T Consensus 387 ~RL~~F~~~l 396 (409)
T PRK11098 387 KRLRSFEAAL 396 (409)
T ss_pred HHHHHHHHHH
Confidence 9999998743
No 486
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.11 E-value=3.6e-06 Score=99.81 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=78.0
Q ss_pred EeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHHhc-CcccchHHHHHHHHHh
Q 001505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENILF-GKDMRQSFYEEVLEGC 697 (1065)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlf-G~~~d~~~y~~vl~ac 697 (1065)
.+++|+.+++|||+|+||||++..|.+.+....|.. +|+++++++ |..+..||+.+ ++-++-. ...+-+..
T Consensus 252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----kV~LI~~Dt--~RigA~EQLr~~AeilGVp-v~~~~~~~ 323 (484)
T PRK06995 252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----KVALLTTDS--YRIGGHEQLRIYGKILGVP-VHAVKDAA 323 (484)
T ss_pred cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----eEEEEeCCc--cchhHHHHHHHHHHHhCCC-eeccCCch
Confidence 345789999999999999999999999887777753 578999998 77888999964 3322100 00000111
Q ss_pred cchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCC-----CEEEEeCCCCCCC
Q 001505 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNS-----DVYIFDDPFSAVD 752 (1065)
Q Consensus 698 ~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~a-----dIlLLDDp~SALD 752 (1065)
.+...+..+.+.|...|..-|.+-. ..++..+.+..+++ .+|+||.++..-|
T Consensus 324 Dl~~aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~ 380 (484)
T PRK06995 324 DLRLALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT 380 (484)
T ss_pred hHHHHHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH
Confidence 1223455666777788888664321 11223333344443 5788887776633
No 487
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.10 E-value=6.3e-05 Score=92.90 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHH
Q 001505 929 LIGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGL 1008 (1065)
Q Consensus 929 ~l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~ 1008 (1065)
++++++++.++..++.+++.++....+.+...+++.++++++++.|++||+..++|.++||+++|++.++......+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445544455555555655666677889999999999999999999999999999999999999999987777777777
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH
Q 001505 1009 AFALIQLLSIIILM-SQAAWQVFPL 1032 (1065)
Q Consensus 1009 ~~~~~~~l~~i~vi-~~~~~~~~~~ 1032 (1065)
+...+..+..++++ ...+|++.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li 142 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLL 142 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 77655555554444 4667765443
No 488
>PRK14079 recF recombination protein F; Provisional
Probab=98.10 E-value=5.1e-06 Score=95.97 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHhHHHHHHHHHHhhhcCCcEEEEEcCCcchhhcCCEEE
Q 001505 720 NLSGGQKQRIQLARAVY---------SNSDVYIFDDPFSAVDAHTGTHLFKQCLMGLLSQKTVLYTTHQLEFLDAADLVL 790 (1065)
Q Consensus 720 nLSGGQKQRIaLARAly---------~~adIlLLDDp~SALD~~t~~~if~~~i~~ll~~kTvIlVTH~l~~l~~aD~Il 790 (1065)
-+|+||+++++||+++. .+++|+|||||+|.||.+..+.+.+ .+... ..+ +|| -.+.-+-+|+++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~-~l~~~--~q~--~it-~t~~~~~~~~~~ 336 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLA-LAASL--PQA--IVA-GTEAPPGAALTL 336 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHH-HHhcC--CcE--EEE-cCCCCCCCceEE
Confidence 57999999999999998 8999999999999999998777653 34322 133 444 224556799999
Q ss_pred EEeCCEEEEec
Q 001505 791 VMKDGKIEQSG 801 (1065)
Q Consensus 791 vl~~G~I~e~G 801 (1065)
.+++|++.-..
T Consensus 337 ~~~~~~~~~~~ 347 (349)
T PRK14079 337 RIEAGVFTPEA 347 (349)
T ss_pred EEeccEecCCC
Confidence 99999886543
No 489
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.06 E-value=0.012 Score=66.19 Aligned_cols=200 Identities=16% Similarity=0.081 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 279 LNAAFAGVNTIASYIGPFLITNFVSFLSGKHDHSSYHYGLVLASVFLFAKTVESLTQRQWYFGANRIGIRVRSALTVLIY 358 (1065)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~~~~iR~~L~~~iy 358 (1065)
....+.++.+.++......-+.+.+.+.+.+.. ... -.++.+++..+..++......|...+++.+.|.-|+..+.
T Consensus 31 ~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~-~f~---~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~ 106 (281)
T PF06472_consen 31 VLLLLLLARVYLSVRINFWNGDFYNALQQKDLQ-AFW---RLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLH 106 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666677788888765532 111 1111122222223333344556688999999999999999
Q ss_pred HHHhccccCCC------ChHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001505 359 KRSMAIKFAGP------SSGIIINMINVDVERIGDFFL-YIHRIWLLPVQVFLALVILYKNLGAAPAFAALFSTIFVMVS 431 (1065)
Q Consensus 359 ~K~L~ls~~~~------~~G~ivnlms~D~~~i~~~~~-~~~~~w~~pl~i~~al~lL~~~lg~~~~l~~l~~~~l~~~~ 431 (1065)
++=++-...-+ .....=.+++.|++++.+... ....+...++.++...+.||...|+...++.++-.++...+
T Consensus 107 ~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~ 186 (281)
T PF06472_consen 107 DRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLI 186 (281)
T ss_pred HHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 98775432211 123344589999999877554 45566677777888888899888844443555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH
Q 001505 432 NTPLANRQERFHSMIMEAKDARIKATSETLKSMRVLKLLSWEQEFLKKLLR 482 (1065)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i~~ 482 (1065)
...+++...+...+..+...+--.....+.++-..|-+|+-|+.-++++++
T Consensus 187 ~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~ 237 (281)
T PF06472_consen 187 THWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDR 237 (281)
T ss_pred HHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHH
Confidence 677777776666665555555555677888999999999988866665554
No 490
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.06 E-value=3.9e-05 Score=78.44 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=93.0
Q ss_pred eEeeCCcEEEEECCCCCChHHHHHHHhCccc--CCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCc---cc-----ch
Q 001505 618 MKIMKGSKVAVCGSVGSGKSSLLSSILGEIP--RISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGK---DM-----RQ 687 (1065)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~--~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~---~~-----d~ 687 (1065)
|++++ .++.|+|.+||||||||.+|.--+. +.-|.- ...|.+ -.....+.+|+..-. +. ..
T Consensus 33 LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~-n~~~~~-------~~s~s~l~~~~k~~~~~k~~~g~FlRA 103 (233)
T COG3910 33 LEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGGGK-NFKGEL-------DASHSALVDYAKLHKRKKPPIGFFLRA 103 (233)
T ss_pred ccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCCCc-CcCccc-------ccccchHHHhHHHhhcCCCCcceEEeh
Confidence 44433 4889999999999999999964432 222321 222211 122334556664321 11 11
Q ss_pred HHHHHHHHHhcchHHHHhhcCCCCccccCCC---CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHH
Q 001505 688 SFYEEVLEGCALNQDIEMWADGDLSVVGERG---INLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCL 764 (1065)
Q Consensus 688 ~~y~~vl~ac~L~~di~~Lp~Gd~T~IGe~G---~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i 764 (1065)
|..-.+.. -.+|+.. +.+-+| ...|-|+-=-=-..|.+ .+.-||+||||=|||-+.-.-.+... +
T Consensus 104 Es~yn~as---~~De~~~-------e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~-l 171 (233)
T COG3910 104 ESFYNVAS---YLDEADG-------EANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAI-L 171 (233)
T ss_pred hHHHHHHH---HHHhhhh-------hcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHH-H
Confidence 22222222 1122211 111122 23477775444444544 57789999999999999865444332 3
Q ss_pred hhh-cCCcEEEEEcCCcchh--hcCCEEEEEeCCEEEEecCHHHHH
Q 001505 765 MGL-LSQKTVLYTTHQLEFL--DAADLVLVMKDGKIEQSGKYEDLI 807 (1065)
Q Consensus 765 ~~l-l~~kTvIlVTH~l~~l--~~aD~Ilvl~~G~I~e~Gt~~eL~ 807 (1065)
+.+ -.|.-+|++||.+=.+ |.| .|+-++.|-|. .-+|+|.-
T Consensus 172 ~~la~sGaQ~IiATHSPiLlAiP~A-~I~~~~~~g~~-~~~fe~te 215 (233)
T COG3910 172 RDLADSGAQIIIATHSPILLAIPGA-EIYEISESGIE-ERDFEETE 215 (233)
T ss_pred HHHHhcCCeEEEEecChhheeCCCc-EEEEEecCCcc-ccchHHHH
Confidence 333 3478999999998765 444 78888766543 44566553
No 491
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.06 E-value=0.00018 Score=89.81 Aligned_cols=129 Identities=15% Similarity=0.238 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccChhHHHHHhhhcHHHHHhHHHHHHHHHH
Q 001505 930 IGVFIFLSGGSSFFILGRAVLLATIAIKTAQRLFLNMITSVFRAPISFFDSTPSSRILNRCSTDQSTVDTDIPYRLAGLA 1009 (1065)
Q Consensus 930 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~Lh~~ll~~vl~aPmsFFD~tP~GrIlNRfS~D~~~vD~~lp~~l~~~~ 1009 (1065)
....+..++...++.++|.+++...+-+....+=.+.+++++|-|++||.+.++|.+++|++ |++.|-.-+..+....+
T Consensus 197 ~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~i 275 (709)
T COG2274 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLI 275 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34555667778889999999999999999999999999999999999999999999999997 78888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHhhhHhhhhccc
Q 001505 1010 FALIQLLSIIILMSQAAWQVFPLF---LVI-LGISIWYQARKLSISRIILFHVC 1059 (1065)
Q Consensus 1010 ~~~~~~l~~i~vi~~~~~~~~~~~---ipl-~~~~~~iq~~Yl~tsReL~~~~~ 1059 (1065)
.-++.++..+++|...+|++.+++ +|+ +++.++.+.+..+..|+......
T Consensus 276 iD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a 329 (709)
T COG2274 276 IDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESA 329 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888888876543 333 34456678888888888765443
No 492
>PRK01889 GTPase RsgA; Reviewed
Probab=98.03 E-value=5.8e-06 Score=95.63 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=63.7
Q ss_pred EeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC----------eEEEEecCCCCCCCcHHHHHhcCcccch-
Q 001505 619 KIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG----------KKAYVPQSSWIQTGTIRENILFGKDMRQ- 687 (1065)
Q Consensus 619 ~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g----------~iayv~Q~pwif~gTIreNIlfG~~~d~- 687 (1065)
.+++|++++++|++|+|||||+++|+|+.++..|+| ..++ .+.+++|.+++++.....|+.+..+.+.
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i-~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~~~~~~l 269 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV-REDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWDAEDGV 269 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeE-EECCCCCcchhhhccEEEecCCCeecCCCchhhhcccCchhhH
Confidence 467899999999999999999999999999999998 7653 4889999999999888888777654221
Q ss_pred ----HHHHHHHHHhcc
Q 001505 688 ----SFYEEVLEGCAL 699 (1065)
Q Consensus 688 ----~~y~~vl~ac~L 699 (1065)
..+.+..+.|..
T Consensus 270 ~~~f~~~~~~~~~c~f 285 (356)
T PRK01889 270 EETFSDIEELAAQCRF 285 (356)
T ss_pred HHhHHHHHHHHccCCC
Confidence 234455555654
No 493
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.00 E-value=8.1e-06 Score=85.84 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=37.9
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCcccCCCCcEEEECC
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHG 659 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g 659 (1065)
.+.+++|+.++|+||+|||||||+++|+|++++..|.+ .+.+
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i-~ied 60 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERII-TIED 60 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEE-EECC
Confidence 46688999999999999999999999999999988877 7755
No 494
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.99 E-value=2.7e-06 Score=105.75 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001505 449 AKDARIKATSETLKSMRVLKLLSWEQEFLKKL---------LRLREIERDSLKKYLYTCSAIAFLFWASPTLVSVITFGV 519 (1065)
Q Consensus 449 ~~d~R~~~~~E~L~~ir~IK~~~wE~~f~~~i---------~~~R~~E~~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~ 519 (1065)
........+.|++.++..||..+-|+.....+ .++.+...+..+...........+... ....++.++.
T Consensus 38 ~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~--~~~~il~ig~ 115 (644)
T PRK10733 38 LQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFIS--WFPMLLLIGV 115 (644)
T ss_pred HHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHH--HHHHHHHHHH
Confidence 34455667788899999999887654332222 111111111000000111111122222 2233445777
Q ss_pred HHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccEEEeee
Q 001505 520 CILLKTPLTSG---AVLSALATFRILQEPIYNLPELISMIAQTKVSLYRIQEFIKEDNQKKPITEPTSKASDVAIDIEAG 596 (1065)
Q Consensus 520 ~~~~~~~Lt~~---~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~RI~~fL~~~e~~~~~~~~~~~~~~~~I~~~n~ 596 (1065)
+.++.+.++.| .++++..+-..+..| ..+...+..+.....+.+|+.+..+....+.. .
T Consensus 116 ~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~----------~------- 177 (644)
T PRK10733 116 WIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPSR----------F------- 177 (644)
T ss_pred HHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHH----------H-------
Confidence 77777777776 455544444444455 55566667777777778888777654221000 0
Q ss_pred EEEecccccccCCCcccccCCeEeeCCcEEEEECCCCCChHHHHHHHhCccc
Q 001505 597 EYAWDAREENFKKPTIKLTDKMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1065)
Q Consensus 597 sfsw~~~~~~~~~~~~~L~~nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~ 648 (1065)
.. + ...+++| +.++||+|+|||++.+++.++..
T Consensus 178 ----~~-----------~--~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 178 ----QK-----------L--GGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred ----Hh-----------c--CCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 00 0 1235567 99999999999999999998764
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.96 E-value=8.6e-06 Score=86.39 Aligned_cols=108 Identities=15% Similarity=0.220 Sum_probs=68.2
Q ss_pred EEEEECCCCCChHHHHHHHhCcccCCCCcEEEECCeEEEEecCCCCCCCcHHHHH-----hcC--cccchHHHHHHHHHh
Q 001505 625 KVAVCGSVGSGKSSLLSSILGEIPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-----LFG--KDMRQSFYEEVLEGC 697 (1065)
Q Consensus 625 ~vaIvG~~GSGKSTLl~~LlGe~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNI-----lfG--~~~d~~~y~~vl~ac 697 (1065)
+++|+|++|||||||.++|.+.+ ..| ++.+++++.+...-+.+++- .++ .+++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~-------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 64 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNP-------KVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLL------- 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCC-------CeEEEEecccccccccccHHHhccCCCCCCCcccHHHH-------
Confidence 47999999999999999999987 223 34566666655433333322 122 22333333
Q ss_pred cchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhH
Q 001505 698 ALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHT 755 (1065)
Q Consensus 698 ~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t 755 (1065)
.+++..+-.|.. +--..-+.|.|++++-.+ ..++++++|+|.|++..++..
T Consensus 65 --~~~l~~l~~~~~--~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 65 --ISHLQDLKNGKS--VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred --HHHHHHHHCCCC--EeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 244444444432 233345778888776554 568899999999999988643
No 496
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.92 E-value=3.7e-06 Score=101.36 Aligned_cols=140 Identities=21% Similarity=0.279 Sum_probs=79.9
Q ss_pred eeCCcEEEEECCCCCChHHHHHHHhCc--ccCCCCcEEEECCeEEEEecCCCCCCCcHHHHH-hcCcccchHHHH-----
Q 001505 620 IMKGSKVAVCGSVGSGKSSLLSSILGE--IPRISGAAIKVHGKKAYVPQSSWIQTGTIRENI-LFGKDMRQSFYE----- 691 (1065)
Q Consensus 620 i~~G~~vaIvG~~GSGKSTLl~~LlGe--~~~~~G~i~~v~g~iayv~Q~pwif~gTIreNI-lfG~~~d~~~y~----- 691 (1065)
+++|..+.|.|++|||||||..-.+-+ .+..+..+ .+. + +++ ...+++|- .||-+. +.+.
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~l-yvs----~--eE~---~~~l~~~~~~~G~~~--~~~~~~g~l 85 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGV-FVT----F--EES---PQDIIKNARSFGWDL--QKLVDEGKL 85 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEE-EEE----E--ecC---HHHHHHHHHHcCCCH--HHHhhcCce
Confidence 789999999999999999999987533 22122222 221 1 111 12344443 244322 1111
Q ss_pred ------------HHHHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHhHHH
Q 001505 692 ------------EVLEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLA--RAVYSNSDVYIFDDPFSAVDAHTGT 757 (1065)
Q Consensus 692 ------------~vl~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLA--RAly~~adIlLLDDp~SALD~~t~~ 757 (1065)
.+++...+++. .......+|+||+|||.|+ .|+..+++.+ ....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~-----------l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~ 144 (484)
T TIGR02655 86 FILDASPDPEGQDVVGGFDLSAL-----------IERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRR 144 (484)
T ss_pred EEEecCchhccccccccCCHHHH-----------HHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHH
Confidence 01111112111 1222357899999999999 6776665443 23334
Q ss_pred HHHHHHHhhhc-CCcEEEEEcCCcchh---------h-cCCEEEEEe
Q 001505 758 HLFKQCLMGLL-SQKTVLYTTHQLEFL---------D-AADLVLVMK 793 (1065)
Q Consensus 758 ~if~~~i~~ll-~~kTvIlVTH~l~~l---------~-~aD~Ilvl~ 793 (1065)
.+ .+.++.+. .++|+|++||+.+.. . -||.|+.|+
T Consensus 145 ~l-~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 145 EI-FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HH-HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 44 33444432 489999999987541 2 379999887
No 497
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.92 E-value=7.9e-05 Score=95.68 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=43.8
Q ss_pred HHHHHccCCCEEEEeCCCCCC-CHhHHHHHHHHHHhhhc-CCcEEEEEcCCcchhhc
Q 001505 731 LARAVYSNSDVYIFDDPFSAV-DAHTGTHLFKQCLMGLL-SQKTVLYTTHQLEFLDA 785 (1065)
Q Consensus 731 LARAly~~adIlLLDDp~SAL-D~~t~~~if~~~i~~ll-~~kTvIlVTH~l~~l~~ 785 (1065)
++|++..+|.++++|||+++| |+..++.+ .+.++... ++.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i-~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKI-REWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 67776554 56665543 47899999999987654
No 498
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.84 E-value=1.8e-05 Score=84.33 Aligned_cols=28 Identities=32% Similarity=0.630 Sum_probs=26.4
Q ss_pred eCCcEEEEECCCCCChHHHHHHHhCccc
Q 001505 621 MKGSKVAVCGSVGSGKSSLLSSILGEIP 648 (1065)
Q Consensus 621 ~~G~~vaIvG~~GSGKSTLl~~LlGe~~ 648 (1065)
++|++++|+||+|||||||+++|.+.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999875
No 499
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.81 E-value=5.9e-05 Score=100.36 Aligned_cols=142 Identities=18% Similarity=0.272 Sum_probs=76.5
Q ss_pred CeEeeCCcEEEEECCCCCChHHHHHHHhCccc-CCCCcEEEECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHHHH
Q 001505 617 KMKIMKGSKVAVCGSVGSGKSSLLSSILGEIP-RISGAAIKVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEVLE 695 (1065)
Q Consensus 617 nl~i~~G~~vaIvG~~GSGKSTLl~~LlGe~~-~~~G~i~~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~vl~ 695 (1065)
++..++++.++|+|+.|+|||||++++.+.+. ..+|.+ .+++ +++.+..-. ++. .+...+...++
T Consensus 201 ~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~v-fv~~--~~v~~~~~~----------~~~-~~~~~~~~~~~ 266 (1153)
T PLN03210 201 HLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSV-FIDR--AFISKSMEI----------YSS-ANPDDYNMKLH 266 (1153)
T ss_pred ccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEE-Eeec--cccccchhh----------ccc-ccccccchhHH
Confidence 45667889999999999999999999966553 346766 5543 112211100 110 00001110000
Q ss_pred HhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhhh----cCCc
Q 001505 696 GCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMGL----LSQK 771 (1065)
Q Consensus 696 ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~l----l~~k 771 (1065)
...+.+..+....+..+. . .|+.|+|+. .++-+++|||. |... .+ +.+.+. -.|.
T Consensus 267 --l~~~~l~~il~~~~~~~~----~-~~~~~~~L~------~krvLLVLDdv----~~~~---~l-~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 267 --LQRAFLSEILDKKDIKIY----H-LGAMEERLK------HRKVLIFIDDL----DDQD---VL-DALAGQTQWFGSGS 325 (1153)
T ss_pred --HHHHHHHHHhCCCCcccC----C-HHHHHHHHh------CCeEEEEEeCC----CCHH---HH-HHHHhhCccCCCCc
Confidence 001112222111111111 1 266777743 55668889995 4322 22 233332 2478
Q ss_pred EEEEEcCCcchhhc--CCEEEEEe
Q 001505 772 TVLYTTHQLEFLDA--ADLVLVMK 793 (1065)
Q Consensus 772 TvIlVTH~l~~l~~--aD~Ilvl~ 793 (1065)
+||++||+.+.+.. +|+++.++
T Consensus 326 rIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred EEEEEeCcHHHHHhcCCCeEEEec
Confidence 99999999998854 68888774
No 500
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=97.80 E-value=5.7e-05 Score=85.00 Aligned_cols=156 Identities=22% Similarity=0.227 Sum_probs=107.3
Q ss_pred eEeeCCcEEEEECCCCCChHHHHHHHhC-cccCCCCc--EE-EECCeEEEEecCCCCCCCcHHHHHhcCcccchHHHHHH
Q 001505 618 MKIMKGSKVAVCGSVGSGKSSLLSSILG-EIPRISGA--AI-KVHGKKAYVPQSSWIQTGTIRENILFGKDMRQSFYEEV 693 (1065)
Q Consensus 618 l~i~~G~~vaIvG~~GSGKSTLl~~LlG-e~~~~~G~--i~-~v~g~iayv~Q~pwif~gTIreNIlfG~~~d~~~y~~v 693 (1065)
+-|++| +++|+|++--|||||+.+|-. -.+...|. -. -.+-+.+++.-+ |+ + .
T Consensus 238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipGDGRE~vVTd~~lakaeae----------~g---r---------~ 294 (554)
T COG3044 238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERVVTDVKLAKAEAE----------EG---R---------C 294 (554)
T ss_pred cCCCcc-eEEEecCCccchhHHHHHHHhcccccCCCCCceEEEehhhhhhhhcc----------cc---e---------e
Confidence 678999 999999999999999999964 44444442 10 111222332211 11 0 1
Q ss_pred HHHhcchHHHHhhcCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHhHHHHHHHHHHhh-------
Q 001505 694 LEGCALNQDIEMWADGDLSVVGERGINLSGGQKQRIQLARAVYSNSDVYIFDDPFSAVDAHTGTHLFKQCLMG------- 766 (1065)
Q Consensus 694 l~ac~L~~di~~Lp~Gd~T~IGe~G~nLSGGQKQRIaLARAly~~adIlLLDDp~SALD~~t~~~if~~~i~~------- 766 (1065)
+..-.+..+++.||.|-+|.---.| .=||--+|=-.|=||+=..+.++++||=+||+.--+.- +..+-+.|
T Consensus 295 vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrd-Vlake~eG~rtl~pl 372 (554)
T COG3044 295 VSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRD-VLAKESEGERTLTPL 372 (554)
T ss_pred eeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhh-HHHHHhcCcccchHH
Confidence 1112345789999999999866655 45999999999999999999999999999998654321 22222211
Q ss_pred -----hcCC--cEEEEEcCCcc-hhhcCCEEEEEeCCEEE
Q 001505 767 -----LLSQ--KTVLYTTHQLE-FLDAADLVLVMKDGKIE 798 (1065)
Q Consensus 767 -----ll~~--kTvIlVTH~l~-~l~~aD~Ilvl~~G~I~ 798 (1065)
-+++ -+.|.||-.+. ++..+|++++|+|-+-.
T Consensus 373 ~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 373 VDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred HHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 1223 68888888875 57889999999987655
Done!