Query 001506
Match_columns 1065
No_of_seqs 391 out of 584
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 16:41:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001506.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_807-811//hhsearch_pdb/001506hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exu_A Transcription initiatio 1.0 1 1 207.1 10.7 102 167-268 79-193 (200)
2 3h7h_B Transcription elongatio 1.0 1 1 206.9 10.3 100 178-277 2-106 (106)
3 2ckk_A KIN17; beta barrel, rib 1.0 1 1 180.7 11.8 105 957-1063 11-127 (127)
4 3p8b_B Transcription antitermi 1.0 1 1 169.3 14.7 129 182-312 3-131 (152)
5 2do3_A Transcription elongatio 1.0 1 1 165.5 6.4 66 463-528 4-69 (69)
6 2e70_A Transcription elongatio 1.0 1 1 150.4 8.2 62 695-756 7-68 (71)
7 3lpe_A Putative transcription 1.0 1 1 116.9 10.0 89 176-266 4-92 (92)
8 2jvv_A Transcription antitermi 1.0 1 1 112.7 5.7 130 181-310 6-167 (181)
9 1twf_A B220, DNA-directed RNA 1.0 1 1 109.7 0.0 23 705-731 1427-1449(1733)
10 1twf_A B220, DNA-directed RNA 1.0 1 1 106.6 0.0 11 273-283 436-446 (1733)
No 1
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=207.12 Aligned_cols=102 Identities=28% Similarity=0.553 Sum_probs=94.6
Q ss_pred HHHHHHHH--CCCCC------CCCCEEEEECCCCHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 02265431--19999------99927999903714799999999999850-----8986558998317986479999063
Q 001506 167 TTDVEQQA--LLPSV------RDPKLWMVKCAIGREREAAVCLMQKCIDK-----GSELQIRSVIALDHLKNYIYIEADK 233 (1065)
Q Consensus 167 ~~~v~q~~--LlPsv------~DP~lw~Vkck~G~Er~vv~~Lm~K~~~~-----~~~l~I~Svf~~~~lkGYIYIEA~~ 233 (1065)
.+.+||+. +||+. +||+||+|||++|+||++|++||+|+++. +.+++|+|||++++|||||||||++
T Consensus 79 ~G~LPq~i~~lLp~y~~r~~S~DP~iw~Vkc~~G~Er~va~~l~~K~~~~~~~~~~~~l~I~Si~~~d~lkGYIyVEA~~ 158 (200)
T 2exu_A 79 DGRLPAEVVELLPHYKPRDGSGSATIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIFQRDNYTGRIYIEAPK 158 (200)
T ss_dssp CSCCCHHHHTTCTTCCCTTSCSCCCEEEEEECTTCHHHHHHHHHHHHHHHHHHSCSSCCCCCEEECCTTSTTEEEEECSC
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECC
T ss_conf 57686889963877667776788877999657986999999999999986501579986379999548985799999798
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECHHHHHHCCCCCC
Q ss_conf 58999998148650101246408465641012333
Q 001506 234 EAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVES 268 (1065)
Q Consensus 234 ~~~V~~ai~Gi~~i~~~~~~lVpi~Em~~vL~v~k 268 (1065)
+.+|.+||+|+++||.+++.|||++||+++|+++-
T Consensus 159 ~~~V~~ai~Gi~~vy~~~~~lVPi~Em~dll~v~~ 193 (200)
T 2exu_A 159 QSVIEKFCNGVPDIYISQKLLIPVQELPLLLKPNL 193 (200)
T ss_dssp HHHHHHHHTTCTTEEEEEEEECCGGGHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHH
T ss_conf 89999999604444237845764899676754455
No 2
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=1.00 E-value=1 Score=206.92 Aligned_cols=100 Identities=48% Similarity=0.761 Sum_probs=94.7
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHHH---CCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHCCCCCCE--EEE
Q ss_conf 9999927999903714799999999999850---89865589983179864799990635899999814865010--124
Q 001506 178 SVRDPKLWMVKCAIGREREAAVCLMQKCIDK---GSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS--QKV 252 (1065)
Q Consensus 178 sv~DP~lw~Vkck~G~Er~vv~~Lm~K~~~~---~~~l~I~Svf~~~~lkGYIYIEA~~~~~V~~ai~Gi~~i~~--~~~ 252 (1065)
|++||+||+|||++|+||++|++||+|++++ +.+++|+|||+++++||||||||+++.+|.+||+|++|+|+ +++
T Consensus 2 sv~Dp~i~~Vk~~~G~Er~va~~L~~k~~~~~~~~~~l~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~~~~~~~ 81 (106)
T 3h7h_B 2 SHMDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQ 81 (106)
T ss_dssp --CCCEEEEEECCTTCHHHHHHHHHHHHHHHTTSSSCCCCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGGGGSSCC
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHCCCCEECCCCCC
T ss_conf 98899789999789838999999999999863359986369999628984699999698899999985345141023324
Q ss_pred EEECHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 6408465641012333322478996
Q 001506 253 MLVPIREMTDVLAVESKAIDLSRDT 277 (1065)
Q Consensus 253 ~lVpi~Em~~vL~v~k~~~~l~~G~ 277 (1065)
.|||++||+++|+++++...|++|+
T Consensus 82 ~lVpi~Em~~~L~~~k~~~~l~~G~ 106 (106)
T 3h7h_B 82 QMVPIKEMTDVLKVVKEVANLGSGC 106 (106)
T ss_dssp EECCGGGTTGGGCCEEC--------
T ss_pred EEECHHHHHHHCCCCCCCCCCCCCC
T ss_conf 0776999997667576525678998
No 3
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=1.00 E-value=1 Score=180.74 Aligned_cols=105 Identities=22% Similarity=0.391 Sum_probs=94.3
Q ss_pred CCCCCCCCEEE-E--C---CCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEECCCCEEECCCCCCCCEEEECCCCCCCE
Q ss_conf 99974384999-7--0---8986207999996789849999255899946884499705549999992999808899842
Q 001506 957 EGPWFMPDILV-R--R---SGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGAT 1030 (1065)
Q Consensus 957 ~~~W~~~~I~V-~--~---~g~~~~~GvI~~V~~~g~~~V~l~~~~~g~~v~v~~~~LE~V~P~kgd~VkVi~G~~rG~t 1030 (1065)
.++|+++||+| + + .|+++|+|||++|.++++|+|+|+++ |++++++|+|||||+|++|++|+||+|+|||++
T Consensus 11 ~~~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~~~~c~V~l~~~--g~~v~v~q~~LETViP~~g~~V~Iv~G~~rG~~ 88 (127)
T 2ckk_A 11 TDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDS--GDKLKLDQTHLETVIPAPGKRILVLNGGYRGNE 88 (127)
T ss_dssp CSCCCCTTBEEEECCSTTCGGGTTCEEEEEEEETTTEEEEEETTT--CCEEEEEGGGEEECCCCTTCEEEECSSTTTTCE
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCC--CCEEEECHHHCEEECCCCCCEEEEEECCCCCCE
T ss_conf 888530986999997667875137408999966898199997799--979987369928843789998999844657848
Q ss_pred EEEEEEECC--CCEEEECC----CCCEEEEECCCHHCCC
Q ss_conf 899977489--81999427----9946998331101025
Q 001506 1031 GKLIGVDGT--DGIVKVDV----SLDVKILDMAILAKLA 1063 (1065)
Q Consensus 1031 G~LisiD~~--dgiVk~d~----~~~~kil~~~~L~Kl~ 1063 (1065)
|+|+++|.+ .|+|+|++ +..+++|+|.++||++
T Consensus 89 g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~~ 127 (127)
T 2ckk_A 89 GTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 127 (127)
T ss_dssp EEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEBC
T ss_pred EEEEEEECCCCEEEEEECCCCCCCCEEEEECHHHHHCCC
T ss_conf 999999687768999986688788799754899940429
No 4
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=1.00 E-value=1 Score=169.34 Aligned_cols=129 Identities=29% Similarity=0.442 Sum_probs=118.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEECHHHHH
Q ss_conf 92799990371479999999999985089865589983179864799990635899999814865010124640846564
Q 001506 182 PKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMT 261 (1065)
Q Consensus 182 P~lw~Vkck~G~Er~vv~~Lm~K~~~~~~~l~I~Svf~~~~lkGYIYIEA~~~~~V~~ai~Gi~~i~~~~~~lVpi~Em~ 261 (1065)
-+||+|+|++|+|+.++..|++++.. .++.|+++++|..++||||||+...+++|.+|++++++++....+||.+||.
T Consensus 3 ~~WYvv~~~~g~E~~v~~~L~~~~~~--~~l~i~~v~vp~~fPGYVfVe~~~~~~~~~~v~~t~gV~~fvg~~v~~~Ei~ 80 (152)
T 3p8b_B 3 GKIFAVRVTHGQEETTAKLIYSKVRT--YNLPIYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGEVPFKEIE 80 (152)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHH--HTCCCCEEEECTTCCSEEEEEESSHHHHHHHHTTCTTEEEECSSCBCGGGTG
T ss_pred CEEEEEEEECCHHHHHHHHHHHHHHH--CCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHCCCCEEEECCCCCCHHHHH
T ss_conf 54999999789799999999998743--6983899996658991999999853999999868998787478888999999
Q ss_pred HCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEECCC
Q ss_conf 101233332247899699963487899705999961789889999931566
Q 001506 262 DVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRID 312 (1065)
Q Consensus 262 ~vL~v~k~~~~l~~G~wVRIk~G~YkGDlAqV~~Vd~~~~~V~VkLiPRiD 312 (1065)
++|...+....+++|+||||+.|||+|+.|+|.+++..+.+++|++.+.-.
T Consensus 81 ~il~~~~~~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr 131 (152)
T 3p8b_B 81 HFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIV 131 (152)
T ss_dssp GGCCCSCTTTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSS
T ss_pred HHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEECCE
T ss_conf 986727765567789999994405899789999992898899999993363
No 5
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=1.00 E-value=1 Score=165.54 Aligned_cols=66 Identities=36% Similarity=0.645 Sum_probs=63.7
Q ss_pred CCCEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEEECCEEEEEECCCCCEEEEECCCCCCCCC
Q ss_conf 951245142431321378818992462279356999995858999737987548991443010123
Q 001506 463 PKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE 528 (1065)
Q Consensus 463 ~~~i~v~~~~LrK~F~~GDhVkVi~G~~~GetGlVV~Ve~~~v~ilSD~t~~Ei~Vf~~dL~~~se 528 (1065)
+-.|+||+++|||||++|||||||+|+|+|+|||||+|++++|+||||+||+||+||++||++|+|
T Consensus 4 ~~~i~~p~~~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V~~~dL~~~~d 69 (69)
T 2do3_A 4 GSSGEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE 69 (69)
T ss_dssp CSCCCCCCCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSSCSEEEECTTSEEESCC
T ss_pred CCEEEECHHHCEEECCCCCEEEEECCEECCCEEEEEEEECCEEEEEECCCCCEEEEEHHHHHHHCC
T ss_conf 747997179904412599869990667859618899993999999968998789997689465339
No 6
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=150.36 Aligned_cols=62 Identities=39% Similarity=0.658 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 99999999875446748999007887730499830598699994579869999368832362
Q 001506 695 GRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNV 756 (1065)
Q Consensus 695 g~~~~~~~~~d~liGktV~I~~GpyKG~~G~Vkd~t~~~~rVELhs~~k~V~V~r~~l~~~~ 756 (1065)
|+++++..++|.+|||||+|++||||||+|||||+|+++|||||||+||+|+|+|++|.+++
T Consensus 7 G~~~gr~~grd~liGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs~~K~VtV~r~~l~~~~ 68 (71)
T 2e70_A 7 GMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVG 68 (71)
T ss_dssp CCCCCSSCCTTSSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESSSCCEEEECTTTEEECC
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEEEHHHCCCCC
T ss_conf 76788886765458978899426888837889977898699995688669998855541368
No 7
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=1.00 E-value=1 Score=116.89 Aligned_cols=89 Identities=24% Similarity=0.404 Sum_probs=81.3
Q ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999992799990371479999999999985089865589983179864799990635899999814865010124640
Q 001506 176 LPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLV 255 (1065)
Q Consensus 176 lPsv~DP~lw~Vkck~G~Er~vv~~Lm~K~~~~~~~l~I~Svf~~~~lkGYIYIEA~~~~~V~~ai~Gi~~i~~~~~~lV 255 (1065)
-||++|++||+|+|++|+|+.++..|++++.. ..+.|++++++..++||||||+....+++.+|+++++|.+..-.++
T Consensus 4 ~~sv~d~~WYvv~~~sG~E~~V~~~L~~~~~~--~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV~gfvg~pl 81 (92)
T 3lpe_A 4 RASVGAHMIFAVRTMVGQEKNIAGLMASRAEK--EQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRVRGIVPGTI 81 (92)
T ss_dssp -----CCCEEEEEECTTCHHHHHHHHHHHHHH--TTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTEEEECSSCC
T ss_pred CCCCCCCEEEEEEEECCHHHHHHHHHHHHHHH--CCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHCCCCCEEECCCCC
T ss_conf 67889981999998779599999999998876--4980899997324697899997646069999977999048278999
Q ss_pred CHHHHHHCCCC
Q ss_conf 84656410123
Q 001506 256 PIREMTDVLAV 266 (1065)
Q Consensus 256 pi~Em~~vL~v 266 (1065)
+.+|+..+|++
T Consensus 82 ~~~Ev~~il~p 92 (92)
T 3lpe_A 82 AIEEIEPLLTP 92 (92)
T ss_dssp CHHHHHHHHCC
T ss_pred CHHHHHHHHCC
T ss_conf 99999998684
No 8
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=1.00 E-value=1 Score=112.72 Aligned_cols=130 Identities=14% Similarity=0.184 Sum_probs=102.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE-----------------CCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 9927999903714799999999999850898655899831-----------------79864799990635899999814
Q 001506 181 DPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIAL-----------------DHLKNYIYIEADKEAHVKEACKG 243 (1065)
Q Consensus 181 DP~lw~Vkck~G~Er~vv~~Lm~K~~~~~~~l~I~Svf~~-----------------~~lkGYIYIEA~~~~~V~~ai~G 243 (1065)
+.+||+|+|++|+|+.+...|.+++...+..-.++.+|+| +-++|||||++......|..|+.
T Consensus 6 ~~~WYvv~t~sg~E~kv~~~L~~~~~~~~~~~~~~ev~vP~~~~~~~~~Gk~~~~~~~lfPGYvFV~~~~~~~~~~~vr~ 85 (181)
T 2jvv_A 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRS 85 (181)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCCEEEEEEECCCCHHHHHHC
T ss_conf 89899999979959999999999887679641432999267999996699999998617897899998867641245215
Q ss_pred CCCCCE------EEEEEECHHHHHHCCCCCC-------CCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCEEEE--EEE
Q ss_conf 865010------1246408465641012333-------3224789969996348789970599996178988999--993
Q 001506 244 LRNIYS------QKVMLVPIREMTDVLAVES-------KAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTV--KLI 308 (1065)
Q Consensus 244 i~~i~~------~~~~lVpi~Em~~vL~v~k-------~~~~l~~G~wVRIk~G~YkGDlAqV~~Vd~~~~~V~V--kLi 308 (1065)
++++.+ .++.+||-+||..++.... ....+++|+.|||+.|||+|..|.|.+++..+.++.| .+.
T Consensus 86 t~gV~~fvg~~~~~P~pl~~~ei~~i~~~~~~~~~~~~~~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~if 165 (181)
T 2jvv_A 86 VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 (181)
T ss_dssp -------------------------------------CCCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEET
T ss_pred CCCCEEECCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEEC
T ss_conf 99902975489983768699999999997515355777655689999999954578996899999948999999999977
Q ss_pred EC
Q ss_conf 15
Q 001506 309 PR 310 (1065)
Q Consensus 309 PR 310 (1065)
-|
T Consensus 166 gr 167 (181)
T 2jvv_A 166 GR 167 (181)
T ss_dssp TE
T ss_pred CC
T ss_conf 99
No 9
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=1.00 E-value=1 Score=109.74 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=10.9
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEECC
Q ss_conf 544674899900788773049983059
Q 001506 705 DALVGTTVKVRLGPYKGYRGRVVDVKG 731 (1065)
Q Consensus 705 d~liGktV~I~~GpyKG~~G~Vkd~t~ 731 (1065)
+-++||.+.+-.| +.-++.+..-
T Consensus 1427 nII~G~~~~~GTG----~FdLl~~~~~ 1449 (1733)
T 1twf_A 1427 NVILGQMAPIGTG----AFDVMIDEES 1449 (1733)
T ss_dssp HHHTTCCCSSGGG----SSEEEECSCC
T ss_pred CCCCCCCCCCCCC----CEEEEECHHH
T ss_conf 0104777778774----0799971033
No 10
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=1.00 E-value=1 Score=106.62 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=4.1
Q ss_pred CCCCCEEEEEC
Q ss_conf 78996999634
Q 001506 273 LSRDTWVRMKI 283 (1065)
Q Consensus 273 l~~G~wVRIk~ 283 (1065)
|.-|++|-+.|
T Consensus 436 l~~gd~VllNR 446 (1733)
T 1twf_A 436 IMDNDPVLFNR 446 (1733)
T ss_dssp CCTTCEEEEEC
T ss_pred ECCCCEEEEEC
T ss_conf 12697789807
Done!