BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001507
(1065 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 14/203 (6%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L +V F G + +VG +G+GKTTL+ +LAG G+I++ G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 775 SGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
GY QN G TV E + FS + E E+ R +++V+ELV L+ L+ A
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEM---RKRIKKVLELVGLSGLAAA--- 136
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 893
+N LS Q++RL IA L + + +DEP S LD + + + + ++ N G+ I+
Sbjct: 137 -DPLN-LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGII 194
Query: 894 CTIHQPSIDIFESFDELLFMKRG 916
H+ ++ + D +L + G
Sbjct: 195 LVTHE--LEYLDDMDFILHISNG 215
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 125 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLVGDEMLKGISGGQ 182
+I G +ED+ ++ L + ++ +++++GL AD L +SGGQ
Sbjct: 93 QIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPL-------NLSGGQ 145
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVISLLQPA 239
K+RL +L R L +DE + LD + +Q+++ LK+ + I L+
Sbjct: 146 KQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG------IILVTHE 199
Query: 240 PEAYELFDDVILLSEGQIVYQG 261
E + D ++ +S G I + G
Sbjct: 200 LEYLDDMDFILHISNGTIDFCG 221
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 29/235 (12%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ- 768
+D Q+L +++ +P + A G SG GK+T+ +L + G+I I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 769 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE-----IELETQRAFVEEVMEL 821
E + G+ Q+ G T+ E+L + E ++L R+FVE + +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 822 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
+ +G G+ +S QR+RL IA + NP I+ +DE T+ LD+ + ++V +
Sbjct: 129 LNTE------VGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 882 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG--------GELIYAGPLGSK 928
+ +++ GRT + H+ S + D++ F+++G EL+ PL +K
Sbjct: 182 LDSLMK-GRTTLVIAHRLSTIV--DADKIYFIEKGQITGSGKHNELVATHPLYAK 233
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 52/248 (20%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKEFVPP- 79
IL D+S +P+ + GP GK +G+IT +G
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPIDNISLEN 73
Query: 80 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL--- 135
R+ QD + T+RE L + + G DEDL
Sbjct: 74 WRSQIGFVSQDSAIMAGTIRENLTYG---------------------LEGDYTDEDLWQV 112
Query: 136 -DI-FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 193
D+ F +SF VE + L +T VG+ +K ISGGQ++RL +
Sbjct: 113 LDLAFARSF----------VENMPDQL------NTEVGERGVK-ISGGQRQRLAIARAFL 155
Query: 194 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 253
++L +DE + LDS + + K L + + L +A D + +
Sbjct: 156 RNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDA----DKIYFIE 211
Query: 254 EGQIVYQG 261
+GQI G
Sbjct: 212 KGQITGSG 219
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ- 768
E+ + L NV + G +++G SG+GK+T+++++ EG++YI
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDL 72
Query: 769 --ETFARIS----GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 822
+ +I G+ Q P LT LE++ + + E +R E +++
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA 132
Query: 823 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
EL N LS Q++R+ IA L NP I+ D+PT LD++ +M+ +
Sbjct: 133 ELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLL 188
Query: 883 RNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ + G+T+V H I++ + ++++K G
Sbjct: 189 KKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++R+ L ++ D+ + LDS T +I++ LK DG TV+ +
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTH 204
Query: 238 PAPEAYELFDDVILLSEGQI 257
A + +I L +G++
Sbjct: 205 DINVA-RFGERIIYLKDGEV 223
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 770
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 76
Query: 771 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 818
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 77 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 127
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 128 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 879 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 181 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 187
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 770
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 74
Query: 771 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 818
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 75 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 125
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 126 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 879 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 179 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 185
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 186 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 12/214 (5%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQE 769
L++L + R G + ++G SG+GK+T + ++L G II I +
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
G Q P +TVL ++ + P ++ + + MEL++ L
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
P + LS Q +R+ IA L P I+ DEPTS LD V+ ++ + N G
Sbjct: 131 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
T+V H+ E D +LFM GG +I G
Sbjct: 189 MTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ +R+ L +++ DE ++ LD +++ +K A +G T++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVTH 196
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268
A E+ D V+ + G I+ +G + D
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 770
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 80
Query: 771 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 818
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 81 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 131
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 132 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 879 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 185 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 191
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 29/239 (12%)
Query: 717 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKR-QETFA 772
+N+ R G+L G SGAGKTT M ++AG TG + D ++ K
Sbjct: 26 INIENGERFGIL----GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
R G Q P LT E++ F S+ E+ R VEEV +++++ + L
Sbjct: 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI---RKRVEEVAKILDIHHV---LN 135
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR---AAAIVMRTVRNIVNTG 889
P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++ G
Sbjct: 136 HFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS--RLG 191
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGG-------ELIYAGPLGSKSCELIKYFEAVEG 941
T++ H P+ DIF D + + +G E +Y P+ + LI +EG
Sbjct: 192 VTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEG 249
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 153 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 212
VE + KIL + V + + +SG Q++R+ LV +L +DE + LD+
Sbjct: 121 VEEVAKILDIHH-----VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 213 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
+K L G T++ + + + + D V +L +G++V G
Sbjct: 176 RDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 12/214 (5%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQE 769
L++L + R G + ++G SG+GK+T + ++L G II I +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
G Q P +TVL ++ + P ++ + + MEL++ L
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
P + LS Q +R+ IA L P I+ DEPTS LD V+ ++ + N G
Sbjct: 152 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
T+V H+ E D +LFM GG +I G
Sbjct: 210 MTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ +R+ L +++ DE ++ LD +++ +K A +G T++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVTH 217
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268
A E+ D V+ + G I+ +G + D
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 31/219 (14%)
Query: 700 PVELKQEGVLEDRLQ---------LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 750
P+E+KQ + D + +L ++ + G A VG+SG GK+TL++++ +
Sbjct: 332 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--R 389
Query: 751 TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 810
+ G I I G+ I + + + GL +++LFS ++ I L
Sbjct: 390 FYDVTSGQILIDGH--------NIKDFLTGSLRNQIGLVQQDNILFSDTVK--ENILLGR 439
Query: 811 QRAFVEEVMELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIV 861
A EEV+E ++ + ++ LP G G LS Q++RL+IA + NP I+
Sbjct: 440 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 499
Query: 862 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 900
+DE TS LD + +I+ + ++++ RT + H+ S
Sbjct: 500 ILDEATSALDLESESIIQEAL-DVLSKDRTTLIVAHRLS 537
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 40/201 (19%)
Query: 63 SGKITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
SG+I +GH K+F+ R + QQD + TV+E + G + D E+
Sbjct: 395 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI-----LLGRPTATD--EEV 447
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
K+A ++IM L DT VG+ +K +SG
Sbjct: 448 VEAAKMANAH-----------------------DFIMN---LPQGYDTEVGERGVK-LSG 480
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQK+RL+ + + +L +DE ++ LD + I + L ++ D TT+I + +
Sbjct: 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLST 538
Query: 241 EAYELFDDVILLSEGQIVYQG 261
+ D ++++ G IV G
Sbjct: 539 ITHA--DKIVVIENGHIVETG 557
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--FARISGYCEQNDI 783
G VG SG GK+TL+ ++AG +T I GD++I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 843
P L+V E++ F L ++ E+ QR V +V E+++L L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKL-AGAKKEVINQR--VNQVAEVLQLAHL---LDRKP--KALSGG 137
Query: 844 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR--TVRNIVNTGRTIVCTIHQPSI 901
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 902 DIFESFDELLFMKRG 916
+ D+++ + G
Sbjct: 196 EAMTLADKIVVLDAG 210
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 142 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 201
L G K ++ + + ++ + A L D K +SGGQ++R+ G LV V +
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157
Query: 202 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
DE + LD++ Q+ + + L G T+I + EA L D +++L G++ G
Sbjct: 158 DEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 770
+L N+ + + G + +VG +G+GK+TL ++ + I E G + I G+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 76
Query: 771 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 818
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 77 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 127
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 128 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 879 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 181 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 187
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 29/239 (12%)
Query: 717 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKR-QETFA 772
+N+ R G+L G SGAGKTT M ++AG TG + D ++ K
Sbjct: 26 INIENGERFGIL----GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
R G Q P LT E++ F S+ E+ R VEEV +++++ + L
Sbjct: 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI---RKRVEEVAKILDIHHV---LN 135
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR---AAAIVMRTVRNIVNTG 889
P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++ G
Sbjct: 136 HFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS--RLG 191
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGG-------ELIYAGPLGSKSCELIKYFEAVEG 941
T++ H P+ DIF D + + +G E +Y P+ + LI +EG
Sbjct: 192 VTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEG 249
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 153 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 212
VE + KIL + V + + +SGGQ++R+ LV +L +DE + LD+
Sbjct: 121 VEEVAKILDIHH-----VLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 213 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
+K L G T++ + + + + D V +L +G++V G
Sbjct: 176 RDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--FARISGYCEQNDI 783
G VG SG GK+TL+ ++AG +T I GD++I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 843
P L+V E++ F L ++ E+ QR V +V E+++L L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKL-AGAKKEVINQR--VNQVAEVLQLAHL---LDRKP--KALSGG 137
Query: 844 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR--TVRNIVNTGRTIVCTIHQPSI 901
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 902 DIFESFDELLFMKRG 916
+ D+++ + G
Sbjct: 196 EAMTLADKIVVLDAG 210
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 142 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 201
L G K ++ + + ++ + A L D K +SGGQ++R+ G LV V +
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157
Query: 202 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
DE + LD++ Q+ + + L G T+I + EA L D +++L G++ G
Sbjct: 158 DEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 770
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 80
Query: 771 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 818
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 81 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 131
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
E ++G G GLS QR+R+ IA LV NP I+ D+ TS LD + ++
Sbjct: 132 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 879 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 185 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+T+VG E G+SGGQ++R+ LV ++L D+ ++ LD + + I++ + +
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMH---KI 191
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--FARISGYCEQNDI 783
G VG SG GK+TL+ ++AG +T I GD++I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 843
P L+V E++ F L ++ E+ QR V +V E+++L L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKL-AGAKKEVINQR--VNQVAEVLQLAHL---LDRKP--KALSGG 137
Query: 844 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR--TVRNIVNTGRTIVCTIHQPSI 901
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 902 DIFESFDELLFMKRG 916
+ D+++ + G
Sbjct: 196 EAMTLADKIVVLDAG 210
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 142 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 201
L G K ++ + + ++ + A L D K +SGGQ++R+ G LV V +
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157
Query: 202 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
D+ + LD++ Q+ + + L G T+I + EA L D +++L G++ G
Sbjct: 158 DQPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 772
L NV + G +++G SG+GK+T+++++ EG++YI +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDLDDDELT 78
Query: 773 RIS----GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
+I G+ Q P LT LE++ + + E +R E +++ EL
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER- 137
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VN 887
N LS Q++R+ IA L NP I+ D+PT LD++ +M+ ++ +
Sbjct: 138 ---FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194
Query: 888 TGRTIVCTIHQPSIDIFESFDELLFMKRG 916
G+T+V H I++ + ++++K G
Sbjct: 195 DGKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++R+ L ++ D+ + LDS T +I++ LK DG TV+ +
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE-DGKTVVVVTH 204
Query: 238 PAPEAYELFDDVILLSEGQI 257
A + +I L +G++
Sbjct: 205 DINVA-RFGERIIYLKDGEV 223
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 29/229 (12%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++T +PG ALVG +G+GKTT++++L + + G I + G R+ + +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
S G+ + +++LFS ++ ++ A EE+ E +LT + L
Sbjct: 428 RS--------SIGIVLQDTILFSTTVK--ENLKYGNPGATDEEIKEAAKLTHSDHFIKHL 477
Query: 835 P-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
P NG LS QR+ L I +ANP I+ +DE TS +D + + + +
Sbjct: 478 PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL 537
Query: 886 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIK 934
+ G+T + H+ ++ ++ D L+ + R GE++ G K ELI+
Sbjct: 538 ME-GKTSIIIAHR--LNTIKNAD-LIIVLRDGEIVEMG----KHDELIQ 578
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 15/206 (7%)
Query: 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYC 778
+ G L+G SG GKTT + ++AG + G I GD ++ P + + +
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 89
Query: 779 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
Q+ P +TV E++ F ++ + E++ + + E++++ EL + A
Sbjct: 90 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-------- 140
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + + +
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 899 PSIDIFESFDELLFMKRGGELIYAGP 924
++ D + M RG L P
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSP 226
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++R+ +V VL MDE + LD+ + +K + L TT I +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 200
Query: 238 PAPEAYELFDDVILLSEGQIVYQG 261
EA + D + +++ GQ++ G
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 15/206 (7%)
Query: 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYC 778
+ G L+G SG GKTT + ++AG + G I GD ++ P + + +
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 90
Query: 779 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
Q+ P +TV E++ F ++ + E++ + + E++++ EL + A
Sbjct: 91 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-------- 141
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + + +
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 899 PSIDIFESFDELLFMKRGGELIYAGP 924
++ D + M RG L P
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSP 227
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++R+ +V VL MDE + LD+ + +K + L TT I +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 201
Query: 238 PAPEAYELFDDVILLSEGQIVYQG 261
EA + D + +++ GQ++ G
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARIS 775
V+ + G AL+G SG GKTT + +LAG +G I D+ ++ P + R
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK----YREV 77
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 835
G QN P +TV E++ F R S+ E+E + V+E+ + L P
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKR------VVEIARKLLIDNLLDRKP 131
Query: 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
LS Q++R+ +A LV P ++ DEP S LDA I+ ++++
Sbjct: 132 --TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 152 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 211
VVE K+L D L+ D +SGGQ++R+ LV +VL DE + LD++
Sbjct: 114 VVEIARKLL-----IDNLL-DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167
Query: 212 TTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD--- 268
+ +KH + L G T + + EA + + + ++G++V G V D
Sbjct: 168 LRMIMRAEIKHLQQEL-GITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226
Query: 269 -FFASMGFSCPKRKNVADFLQEVTSKK 294
F + P + DF V +K+
Sbjct: 227 NMFVASFIGNPPTNFLRDFSVSVENKQ 253
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 38/218 (17%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 770
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 74
Query: 771 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 818
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 75 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 125
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 126 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 879 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
MR + I GRT++ I + ++ D ++ M++G
Sbjct: 179 MRNMHKIC-KGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 185
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 186 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 38/218 (17%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 770
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 80
Query: 771 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 818
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 81 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 131
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 132 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 879 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
MR + I GRT++ I + ++ D ++ M++G
Sbjct: 185 MRNMHKIC-KGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 191
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 192 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 11/211 (5%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV--LAGRKTGGIIEGDIYISGYPKRQET 770
+Q L NV+ G + ++G SGAGK+TL+ L R T EG + + G +
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 73
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
+ ++ Q + +L S + LP E++ + V EL+ L L
Sbjct: 74 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 133
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-G 889
P + LS Q++R+ IA L +NP ++ DE TS LD ++ +++I G
Sbjct: 134 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 920
TI+ H+ +D+ + + + + GELI
Sbjct: 192 LTILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 21/174 (12%)
Query: 172 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 231
D +SGGQK+R+ L +VL DE ++ LD +TT I++ LK R L G T
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLT 193
Query: 232 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV- 290
++ + + D V ++S G+++ Q V FS PK F+Q
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTL 245
Query: 291 ---TSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFN 341
+ QE+ + P+ + +F TG+++ L RRFN
Sbjct: 246 HLDIPEDYQERLQAEPFTDCVPMLRLEF--------TGQSVDAPLLSETARRFN 291
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 16/215 (7%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ- 768
E+ + L NV + G ++ G SG+GK+T ++++ EG++YI
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKP--TEGEVYIDNIKTNDL 72
Query: 769 --ETFARIS----GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 822
+ +I G+ Q P LT LE++ + E +R E ++
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXA 132
Query: 823 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
EL N LS Q++R+ IA L NP I+ DEPT LD++ + + +
Sbjct: 133 ELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLL 188
Query: 883 RNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ + G+T+V H I++ + ++++K G
Sbjct: 189 KKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++R+ L ++ DE + LDS T +I + LK DG TV+ +
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEE-DGKTVVVVTH 204
Query: 238 PAPEAYELFDDVILLSEGQI 257
A + +I L +G++
Sbjct: 205 DINVA-RFGERIIYLKDGEV 223
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E 769
+Q+L + + G ALVG SG GK+T + ++ ++ ++G + I G R
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
I G Q + T+ E++ + EIE + A + +++L
Sbjct: 461 YLREIIGVVSQEPVLF-ATTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFD 517
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
L+G G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + G
Sbjct: 518 TLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREG 575
Query: 890 RTIVCTIHQPSI----DIFESFDELLFMKRG 916
RT + H+ S D+ FD + +++G
Sbjct: 576 RTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 14/198 (7%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQ 780
+ G ALVG SG GK+T++ +L + + G +++ G +Q + G Q
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Query: 781 NDIHSPGLTVLESLLFSAWLRLPS--EIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
I ++ E++ + R+ S EI + A + + ++ L +G G
Sbjct: 1115 EPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDKGTQ 1171
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS Q++R+ IA LV P I+ +DE TS LD + +V + + GRT + H+
Sbjct: 1172 -LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREGRTCIVIAHR 1229
Query: 899 PSIDIFESFDELLFMKRG 916
S ++ D ++ ++ G
Sbjct: 1230 LS--TIQNADLIVVIQNG 1245
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 154 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 213
++IMK L DTLVG+ + +SGGQK+R+ LV ++L +DE ++ LD+ +
Sbjct: 507 DFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 214 YQIIKYLKHSTRALDGTTVI 233
+ L +A +G T I
Sbjct: 563 AVVQAALD---KAREGRTTI 579
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+T VGD+ + +SGGQK+R+ LV +L +DE ++ LD+ + + + L +A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD---KA 1217
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
+G T I ++ + D ++++ G++ G +L
Sbjct: 1218 REGRTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E 769
+Q+L + + G ALVG SG GK+T + ++ ++ ++G + I G R
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
I G Q + T+ E++ + EIE + A + +++L
Sbjct: 461 YLREIIGVVSQEPVLF-ATTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFD 517
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
L+G G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + G
Sbjct: 518 TLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREG 575
Query: 890 RTIVCTIHQPSI----DIFESFDELLFMKRG 916
RT + H+ S D+ FD + +++G
Sbjct: 576 RTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 14/198 (7%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQ 780
+ G ALVG SG GK+T++ +L + + G +++ G +Q + G Q
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Query: 781 NDIHSPGLTVLESLLFSAWLRLPS--EIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
I ++ E++ + R+ S EI + A + + ++ L +G G
Sbjct: 1115 EPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDKGTQ 1171
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS Q++R+ IA LV P I+ +DE TS LD + +V + + GRT + H+
Sbjct: 1172 -LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREGRTCIVIAHR 1229
Query: 899 PSIDIFESFDELLFMKRG 916
S ++ D ++ ++ G
Sbjct: 1230 LS--TIQNADLIVVIQNG 1245
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 154 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 213
++IMK L DTLVG+ + +SGGQK+R+ LV ++L +DE ++ LD+ +
Sbjct: 507 DFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 214 YQIIKYLKHSTRALDGTTVI 233
+ L +A +G T I
Sbjct: 563 AVVQAALD---KAREGRTTI 579
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+T VGD+ + +SGGQK+R+ LV +L +DE ++ LD+ + + + L +A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD---KA 1217
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
+G T I ++ + D ++++ G++ G +L
Sbjct: 1218 REGRTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 21/179 (11%)
Query: 701 VELKQEGVLED--RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII- 755
VE+K E +++ L N+ + G AL+G SG+GK+TL+ +AG + T G I
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 756 --EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 813
E D+ + P + R G QN P +TV +++ F LR E++ +
Sbjct: 62 FDEKDV--TELPPKD----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-- 113
Query: 814 FVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
V E+ ++ + L P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 114 ----VREVAKMLHIDKLLNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 108/288 (37%), Gaps = 55/288 (19%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXX 60
M E L + GN T L++++ I+ LLGP SGK
Sbjct: 1 MVEIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--- 54
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV-AEMTVRETLDFAGQCQGVGSKYDMITE 119
SGKI ++ E P + + Q+W + MTV + + F + +
Sbjct: 55 PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA--------- 105
Query: 120 LARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 179
P E++D ++ A K+L +D + +S
Sbjct: 106 -----------PREEIDKKVREVA--------------KMLHIDKLLNRYPWQ-----LS 135
Query: 180 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239
GGQ++R+ LV VL +DE + LD+ ++ LK + L G T + +
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTHDQ 194
Query: 240 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
EA + D + ++ EG+I+ G V + PK K V FL
Sbjct: 195 AEALAMADRIAVIREGEILQVGTPDEV--------YYKPKYKFVGGFL 234
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 11/211 (5%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV--LAGRKTGGIIEGDIYISGYPKRQET 770
+Q L NV+ G + ++G SGAGK+TL+ L R T EG + + G +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 96
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
+ ++ Q + +L S + LP E++ + V EL+ L L
Sbjct: 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-G 889
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++I G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 920
TI+ H+ +D+ + + + + GELI
Sbjct: 215 LTILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 21/174 (12%)
Query: 172 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 231
D +SGGQK+R+ L +VL D+ ++ LD +TT I++ LK R L G T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLT 216
Query: 232 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV- 290
++ + + D V ++S G+++ Q V FS PK F+Q
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTL 268
Query: 291 ---TSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFN 341
+ QE+ + P+ + +F TG+++ L RRFN
Sbjct: 269 HLDIPEDYQERLQAEPFTDCVPMLRLEF--------TGQSVDAPLLSETARRFN 314
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 771
+ L V+ + G +T ++G +G+GK+TL++V+ G EG +Y +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 772 ARISGYCEQNDIHSPG----LTVLESLL---------------FSAWLRLPSEIELETQR 812
A + Y +P +TVLE+LL + W +P E E+ ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW--IPKEEEM-VEK 133
Query: 813 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
AF +++E ++L+ L G LS Q K + I L+ NP ++ MDEP +G+
Sbjct: 134 AF--KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 873 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
A + V + G T + H+ +DI ++ + L++ G++I G
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 90/244 (36%), Gaps = 35/244 (14%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRT 81
LD +S + +TL++GP SGK G++ + P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 82 SAYVSQQDWQ----VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
Y + +Q + EMTV E L C G + L ++ I P E+ ++
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESP----LNSLFYKKWI----PKEE-EM 130
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
K+F I++ L L D G+ +SGGQ K + G L+ +
Sbjct: 131 VEKAFK------------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 257
++ MDE G+ + I ++ G T + + D + ++ GQI
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
Query: 258 VYQG 261
+ +G
Sbjct: 232 IAEG 235
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----Q 768
+++L ++ + PG ALVG SG GK+T++ +L + + G+I+I G + +
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPE 1149
Query: 769 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
T ++I+ ++ + ++ E++++ PS + + A VEE L + +
Sbjct: 1150 HTRSQIAIVSQEPTLFD--CSIAENIIYGLD---PSSVTM----AQVEEAARLANIHNFI 1200
Query: 829 GAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
L +G G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1201 AELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259
Query: 882 VRNIVNTGRTIVCTIHQ 898
+ + GRT + H+
Sbjct: 1260 L-DRAREGRTCIVIAHR 1275
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 785
G ALVG SG GK+T++ +L + +++G I I G R + +N
Sbjct: 444 GQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRDINLE----FLRKN---- 493
Query: 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-GINGL---- 840
+ E LF+ + I L + EE++ ++ + + LP G N L
Sbjct: 494 VAVVSQEPALFNCTIE--ENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDR 551
Query: 841 ----STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 896
S Q++R+ IA LV NP I+ +DE TS LDA + IV + + GRT +
Sbjct: 552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIA 610
Query: 897 HQPS 900
H+ S
Sbjct: 611 HRLS 614
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 106/267 (39%), Gaps = 41/267 (15%)
Query: 3 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQV 62
+ + + +R R ++ IL LS + P + L+GP GK +
Sbjct: 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---L 1132
Query: 63 SGKITYNGHGFKEFVPPRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
G+I +G K P T + ++ Q+ + + ++ E + + G+ + ++
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIY-----GLDPSSVTMAQV 1187
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
++A I + + E L +T VGD + +SG
Sbjct: 1188 EEAARLANIH-------------------NFIAE-------LPEGFETRVGDRGTQ-LSG 1220
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQK+R+ LV ++L +DE ++ LD+ + + + L RA +G T I +
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD---RAREGRTCIVIAHRLN 1277
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVL 267
D + ++S G I+ +G ++
Sbjct: 1278 TVMNA-DCIAVVSNGTIIEKGTHTQLM 1303
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+TLVGD + +SGGQK+R+ LV ++L +DE ++ LD+ + + + L + +
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKG 603
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
+ L A D +I GQ+V G +++
Sbjct: 604 RTTIIIAHRLSTIRNA----DLIISCKNGQVVEVGDHRALM 640
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 785
G +T ++G +G+GK+TL++V+ G EG +Y + A + Y +
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELYHYGIVRTFQT 90
Query: 786 PG----LTVLESLL---------------FSAWLRLPSEIELETQRAFVEEVMELVELTS 826
P +TVLE+LL + W +P E E+ ++AF +++E ++L+
Sbjct: 91 PQPLKEMTVLENLLIGEINPGESPLNSLFYKKW--IPKEEEM-VEKAF--KILEFLKLSH 145
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
L G LS Q K + I L+ NP ++ MDEP +G+ A + V +
Sbjct: 146 LYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
G T + H+ +DI ++ + L++ G++I G
Sbjct: 201 AKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 11/211 (5%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV--LAGRKTGGIIEGDIYISGYPKRQET 770
+Q L NV+ G + ++G SGAGK+TL+ L R T EG + + G +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 96
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
+ ++ Q +L S + LP E++ + V EL+ L L
Sbjct: 97 ESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-G 889
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++I G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 920
TI+ H+ D+ + + + + GELI
Sbjct: 215 LTILLITHE--XDVVKRICDCVAVISNGELI 243
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 172 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 231
D +SGGQK+R+ L +VL D+ ++ LD +TT I++ LK R L G T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLT 216
Query: 232 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 291
++ + + D V ++S G+++ Q V FS PK F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTL 268
Query: 292 SKKDQEQYWSN-PYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFN 341
E Y P+ P E TG+++ L RRFN
Sbjct: 269 HLDIPEDYQERLQAEPFTDCVPXLRLE-----FTGQSVDAPLLSETARRFN 314
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 771
+ L V+ + G +T ++G +G+GK+TL++V+ G EG +Y +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 772 ARISGYCEQNDIHSPG----LTVLESLL---------------FSAWLRLPSEIELETQR 812
A + Y +P +TVLE+LL + W +P E E+ ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKW--IPKEEEM-VEK 133
Query: 813 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
AF +++E ++L+ L G LS Q K + I L+ NP ++ MD+P +G+
Sbjct: 134 AF--KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAP 186
Query: 873 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
A + V + G T + H+ +DI ++ + L++ G++I G
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 15/206 (7%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L N+ G ALVG SG+GK+T+ ++ + I EG+I + G+ R+ T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 776 GYCE--QNDIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELVELTSLSGALI 832
++H TV ++ ++ + E IE + A+ + + + L
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDF-----INKMDNGLD 471
Query: 833 GLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
+ G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + + R
Sbjct: 472 TVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNR 530
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRG 916
T + H+ S E DE++ ++ G
Sbjct: 531 TSLVIAHRLS--TIEKADEIVVVEDG 554
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 221
+D DT++G+ + +SGGQ++R+ L+ + +L +DE ++ LD+ + I L
Sbjct: 466 MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 222 HSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268
+ + L +A D+++++ +G IV +G +L+
Sbjct: 525 ELQKNRTSLVIAHRLSTIEKA----DEIVVVEDGVIVERGTHNDLLE 567
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET----FARISGYCEQN 781
G +TALVG SG+GK+T++ +L + G I + G+ RQ ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING-- 839
+ S ++ E++ + A PS + E + E + + + + G G
Sbjct: 459 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +++ GRT++ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHL 573
Query: 900 S 900
S
Sbjct: 574 S 574
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 39/220 (17%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKE 75
R ++ I D S I +T L+GP SGK SG I+ +GH ++
Sbjct: 385 RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQ 441
Query: 76 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
P W +++ G S+ ++ + E IA D+
Sbjct: 442 LNPV----------WLRSKI-------------GTVSQEPILFSCSIAENIA-YGADDPS 477
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLV 193
+ + Q+ + V + I +T+VG+ KG+ SGGQK+R+ L+
Sbjct: 478 SVTAEEI----QRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQKQRIAIARALL 530
Query: 194 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233
++L +DE ++ LD+ Y + + L R +DG TV+
Sbjct: 531 KNPKILLLDEATSALDAENEYLVQEALD---RLMDGRTVL 567
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 27/188 (14%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET----FARISGYCEQN 781
G +TALVG SG+GK+T++ +L + G I + G+ RQ ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-GING- 839
+ S ++ E++ + A PS + EE+ + E+ + + P G N
Sbjct: 428 ILFS--CSIAENIAYGA--DDPSSVT-------AEEIQRVAEVANAVAFIRNFPQGFNTV 476
Query: 840 -------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 892
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +++ GRT+
Sbjct: 477 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTV 535
Query: 893 VCTIHQPS 900
+ H+ S
Sbjct: 536 LVIAHRLS 543
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 39/220 (17%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKE 75
R ++ I D S I +T L+GP SGK SG I+ +GH ++
Sbjct: 354 RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQ 410
Query: 76 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
P W +++ G S+ ++ + E IA D+
Sbjct: 411 LNPV----------WLRSKI-------------GTVSQEPILFSCSIAENIA-YGADDPS 446
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLV 193
+ + Q+ + V + I +T+VG+ KG+ SGGQK+R+ L+
Sbjct: 447 SVTAEEI----QRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQKQRIAIARALL 499
Query: 194 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233
++L +DE ++ LD+ Y + + L R +DG TV+
Sbjct: 500 KNPKILLLDEATSALDAENEYLVQEALD---RLMDGRTVL 536
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L N+ G ALVG SG+GK+T+ ++ + I EG I + G+ R+ T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLR 416
Query: 776 GYCE--QNDIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELVELTSLSGALI 832
++H TV ++ ++ E IE + A+ + + + L
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDF-----INKMDNGLD 471
Query: 833 GLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
+ G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + + R
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNR 530
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRG 916
T + H+ S E DE++ ++ G
Sbjct: 531 TSLVIAHRLS--TIEQADEIVVVEDG 554
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 221
+D DT++G+ + +SGGQ++R+ L+ + +L +DE ++ LD+ + I L
Sbjct: 466 MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 222 HSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
+ + L +A D+++++ +G IV +G +L
Sbjct: 525 ELQKNRTSLVIAHRLSTIEQA----DEIVVVEDGIIVERGTHSELL 566
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 27/201 (13%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 785
G ALVG +G+GK+T+ +L EGDI I G ++ Y +N I S
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGG--------KNVNKY-NRNSIRS 93
Query: 786 P-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-------GI 837
G+ +++LF+ ++ I A EEV++ + L + LP G
Sbjct: 94 IIGIVPQDTILFNETIKY--NILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGN 151
Query: 838 NG--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 895
G LS +R+R+ IA L+ +P IV DE TS LD++ + + V ++ RT++
Sbjct: 152 KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKNRTLIII 210
Query: 896 IHQPSIDIFESFDELLFMKRG 916
H+ S S + ++ + +G
Sbjct: 211 AHRLS--TISSAESIILLNKG 229
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
DT+VG++ +K +SGG+++R+ L+ +++ DE ++ LDS T Y K ++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
+ L A + +ILL++G+IV +G +L
Sbjct: 205 RTLIIIAHRLSTISSA----ESIILLNKGKIVEKGTHKDLL 241
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 16/213 (7%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L +V+ + G ALVG SG+GK+T+ ++ + + G I + G+ R +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 776 GY---CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
+ QN +H T+ ++ ++A E ++E Q A ME +E ++ L
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTRE-QIE-QAARQAHAMEFIE--NMPQGLD 471
Query: 833 GLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
+ G NG LS QR+R+ IA L+ + ++ +DE TS LD + + + + +
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL-QKNK 530
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
T++ H+ S E DE+L + GE+I G
Sbjct: 531 TVLVIAHRLS--TIEQADEILVVDE-GEIIERG 560
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
DT++G E +SGGQ++R+ L+ A VL +DE ++ LD+ + I L
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE---- 525
Query: 227 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
L + ++ E D+++++ EG+I+ +G +L
Sbjct: 526 LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 23/203 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG------YPKRQETFARI 774
+ G L+G SG GKTT + ++AG + G I GD ++ P + A +
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
Q+ P +TV +++ F LR E++ + V EV EL+ LT L L
Sbjct: 87 F----QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTEL---LNRK 136
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIV 893
P LS QR+R+ + +V P + MDEP S LDA+ + ++ + G T +
Sbjct: 137 P--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 894 CTIHQPSIDIFESFDELLFMKRG 916
H ++ D + M RG
Sbjct: 195 YVTHD-QVEAMTMGDRIAVMNRG 216
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++R+ G +V +V MDE + LD+ ++ LK R L G T I +
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTH 198
Query: 238 PAPEAYELFDDVILLSEG 255
EA + D + +++ G
Sbjct: 199 DQVEAMTMGDRIAVMNRG 216
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 29/217 (13%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 770
+Q+L +T PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ-- 85
Query: 771 FARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
+ + +H+ V E LLF R L T+ +EE+ + +
Sbjct: 86 -------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHD 137
Query: 830 ALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
+ G P N LS QR+ + +A L+ P ++ +D+ TS LDA V R
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQR 197
Query: 881 TVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ RT++ HQ + + E +LF+K G
Sbjct: 198 LLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEG 232
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 48/260 (18%)
Query: 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFK 74
N + +L L+ + P ++T L+GP SGK GK+ +G
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLV 84
Query: 75 EFVPPRTSAYVSQQDWQVAE------MTVRETLDFAGQCQGVGSKYDMITELARREKIAG 128
++ Y+ Q V + + RE + + +T E+I
Sbjct: 85 QY----DHHYLHTQVAAVGQEPLLFGRSFRENIAYG------------LTRTPTMEEITA 128
Query: 129 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 188
+ + F+ F G DT VG E +SGGQ++ +
Sbjct: 129 VAMESGAHDFISGFPQG--------------------YDTEVG-ETGNQLSGGQRQAVAL 167
Query: 189 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 248
L+ R+L +D+ ++ LD+ ++ + L S T ++ Q + E
Sbjct: 168 ARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS--LAERAHH 225
Query: 249 VILLSEGQIVYQGPRVSVLD 268
++ L EG + QG + +++
Sbjct: 226 ILFLKEGSVCEQGTHLQLME 245
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 770
D + L +V+ PG ALVG SGAGK+T++ +L + I G I I G Q T
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVT 122
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
A + + G+ +++LF+ + I A +EV + + A
Sbjct: 123 QASLRSHI--------GVVPQDTVLFNDTI--ADNIRYGRVTAGNDEVEAAAQAAGIHDA 172
Query: 831 LIGLP-------GINGL--STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
++ P G GL S +++R+ IA ++ P I+ +DE TS LD + +
Sbjct: 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS 232
Query: 882 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ + RT + H+ S + + D++L +K G
Sbjct: 233 LAKVC-ANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 168 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 227
T VG+ LK +SGG+K+R+ ++ ++ +DE ++ LD+S I L
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR 240
Query: 228 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
V L A D ++++ +G IV +G ++L
Sbjct: 241 TTIVVAHRLSTVVNA----DQILVIKDGCIVERGRHEALL 276
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCE-QN 781
G + AL+G +GAGK+TL +LAG + G+I + G + + AR + Q
Sbjct: 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQY 88
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGING 839
+ PG+T+ L + +L E+ + V++ +EL++ LS L G
Sbjct: 89 PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EG 143
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
S ++KR I LV P+ +DE SGLD A +V R V + + H
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 900 SIDIFESFDELLFMKRGGELIYAGP 924
I + D++ M G + GP
Sbjct: 204 RILNYIQPDKVHVMMDGRVVATGGP 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 21/212 (9%)
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA---R 773
V+ R G + L+G SG+GKTT++ ++AG R T +GD++I G KR R
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT----KGDVWIGG--KRVTDLPPQKR 87
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
G QN +TV +++ F + + E++ A V E++ + L S +
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD---ARVRELLRFMRLESYANRF-- 142
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTI 892
+ LS Q++R+ +A L P ++ DEP + +D + + VR + + G T
Sbjct: 143 ---PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199
Query: 893 VCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
V H + E D +L + G + P
Sbjct: 200 VFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 153 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 212
V +++ + L++ A+ + +SGGQ++R+ L +VL DE +D+
Sbjct: 126 VRELLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 213 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 257
++ +++ + G T + + EA E+ D V++L EG +
Sbjct: 181 RRELRTFVRQVHDEM-GVTSVFVTHDQEEALEVADRVLVLHEGNV 224
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 176 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235
+ SGGQK+RL+ LV +VL +D+ ++ +D T +I+ LK T+ G T +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK---GCTTFII 534
Query: 236 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268
Q P A L D +++L EG++ G +L+
Sbjct: 535 TQKIPTAL-LADKILVLHEGKVAGFGTHKELLE 566
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 25/173 (14%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR 767
E+ +L V + +PG L A++G +G+GK+TLM+++ G +E D K
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL 412
Query: 768 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
++ IS + E++LFS ++ ++ + A +E++E ++ +
Sbjct: 413 KDLRGHISAVPQ------------ETVLFSGTIK--ENLKWGREDATDDEIVEAAKIAQI 458
Query: 828 SGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
+I LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 459 HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 17/219 (7%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 768
D L + + G +TA++G +G GK+TL G + + G I D Y ++
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 769 ETFARIS-GYCEQN-DIHSPGLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELT 825
R S G Q+ D +V + + F A ++LP + R V+ ++ +
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED----EIRKRVDNALKRTGIE 134
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + +
Sbjct: 135 HLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 886 VNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
G TI+ H IDI + + +F+ + G +I G
Sbjct: 190 QKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 226
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+S GQKKR+ +LV +VL +DE + GLD +I+K L + L G T+I
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATH 202
Query: 238 PAPEAYELFDDVILLSEGQIVYQG 261
D+V ++ EG+++ QG
Sbjct: 203 DIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQETF 771
QL+V+ G + G + ++G +G GKTT +L G T G + + I Y K Q F
Sbjct: 283 QLVVD-NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
G +Q +L S+ L T F EEV + + L L +
Sbjct: 341 PNYDGTVQQ------------------YLENASKDALSTSSWFFEEVTKRLNLHRLLES- 381
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
+N LS + ++L IA L + +D+P+S LD IV + ++ + +
Sbjct: 382 ----NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 892 IVCTI-HQPSI 901
+ I H SI
Sbjct: 438 VTFIIDHDLSI 448
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 102/241 (42%), Gaps = 29/241 (12%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG---YCEQ 780
+ + ++G +G GKTT++ +LAG + + + + E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 781 NDIHSPGLTVLESLLF----SAWLR-LPSEIELE-TQRAFVEEVMELVELTSLSGALIGL 834
+++S L ++ + + S +L+ +EI + +R +EV EL+ +T+L +
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 894
GL +RL +A L+ + D+P+S LD R + + +R ++ IV
Sbjct: 139 LSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 895 TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAW 954
+ + + +L+ + G +Y + K + A G+ GY PA
Sbjct: 194 ---DHDLIVLDYLTDLIHIIYGESSVYG--------RVSKSYAARVGINNFLKGYLPAEN 242
Query: 955 M 955
M
Sbjct: 243 M 243
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++R++ L VL DE ++ LD ++++ ++ A +G T++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ--QLAEEGKTMVVVTH 211
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 288
A + VI L +G+I +G V F P+ + FL+
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 31/217 (14%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 772
+L +T RPG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQY--- 84
Query: 773 RISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
E +H V E +F L+ L TQ+ +EE+ + +
Sbjct: 85 ------EHRYLHRQVAAVGQEPQVFGRSLQENIAYGL-TQKPTMEEITAAAVKSGAHSFI 137
Query: 832 IGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
GLP G TE QR+ + +A L+ P ++ +D+ TS LDA + V +
Sbjct: 138 SGLP--QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 881 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917
+ V I Q + + E D +LF++ G
Sbjct: 196 LLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 53/255 (20%)
Query: 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFK 74
NR + +L L+ +RP +T L+GP SGK G++ +G
Sbjct: 26 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLP 82
Query: 75 EF---VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 131
++ R A V Q+ QV +++E + + +T+ E+I
Sbjct: 83 QYEHRYLHRQVAAVGQEP-QVFGRSLQENIAYG------------LTQKPTMEEITAAAV 129
Query: 132 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 191
F I GL DT V DE +SGGQ++ +
Sbjct: 130 KSGAHSF--------------------ISGLPQGYDTEV-DEAGSQLSGGQRQAVALARA 168
Query: 192 LVGPARVLFMDEISNGLDSSTTYQIIKYL-----KHSTRALDGTTVISLLQPAPEAYELF 246
L+ VL +D+ ++ LD+++ Q+ + L ++S L T +SL++ A
Sbjct: 169 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA------- 221
Query: 247 DDVILLSEGQIVYQG 261
D IL EG + +G
Sbjct: 222 -DHILFLEGGAIREG 235
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 29/217 (13%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 770
+Q+L +T PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ-- 85
Query: 771 FARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
+ + +H+ V E LLF R L T+ +EE+ + +
Sbjct: 86 -------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHD 137
Query: 830 ALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
+ G P N LS QR+ + +A L+ P ++ +D TS LDA V R
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 881 TVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ RT++ Q + + E +LF+K G
Sbjct: 198 LLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 48/260 (18%)
Query: 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFK 74
N + +L L+ + P ++T L+GP SGK GK+ +G
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLV 84
Query: 75 EFVPPRTSAYVSQQDWQVAE------MTVRETLDFAGQCQGVGSKYDMITELARREKIAG 128
++ Y+ Q V + + RE + + +T E+I
Sbjct: 85 QY----DHHYLHTQVAAVGQEPLLFGRSFRENIAYG------------LTRTPTMEEITA 128
Query: 129 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 188
+ + F+ F G DT VG E +SGGQ++ +
Sbjct: 129 VAMESGAHDFISGFPQG--------------------YDTEVG-ETGNQLSGGQRQAVAL 167
Query: 189 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 248
L+ R+L +D ++ LD+ ++ + L S T ++ Q + E
Sbjct: 168 ARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHH 225
Query: 249 VILLSEGQIVYQGPRVSVLD 268
++ L EG + QG + +++
Sbjct: 226 ILFLKEGSVCEQGTHLQLME 245
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQET 770
+ L NV+ G + G +G+GK+TL+ ++AG +IE GD+ G K+
Sbjct: 23 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYE 77
Query: 771 FARISGYCEQ-NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
R G Q + V + + F+ P + V++ ME V L
Sbjct: 78 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV----PLVKKAMEFVGL-DFDS 132
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
+P LS +++R+ IA +V P I+ +DEP GLD ++R V G
Sbjct: 133 FKDRVPFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 190
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRG 916
+T++ H + D ++ +++G
Sbjct: 191 KTVILISHDIET-VINHVDRVVVLEKG 216
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGG+K+R+ ++V +L +DE GLD +++ ++ G TVI +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 198
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD-----FFAS 272
D V++L +G+ V+ G R+ L+ FF S
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 238
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 783
RPG + LVG +G GK+T + +LAG++ + D P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD----DPPEWQEIIKYFRGSELQNYF 156
Query: 784 HSPGLTVLESLLFSAWL-RLPSEIELETQRA----------FVEEVMELVELTSLSGALI 832
+++++ ++ +P I+ Q+ E+V +++ L L
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK 216
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 892
I LS + +R I + V + DEP+S LD + + +R+++ + +
Sbjct: 217 R--DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274
Query: 893 VCTIHQPSI 901
+C H S+
Sbjct: 275 ICVEHDLSV 283
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 29/217 (13%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 770
+Q+L +T PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ-- 85
Query: 771 FARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
+ + +H+ V E LLF R L T+ +EE+ + +
Sbjct: 86 -------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHD 137
Query: 830 ALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
+ G P N L+ QR+ + +A L+ P ++ +D TS LDA V R
Sbjct: 138 FISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 881 TVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ RT++ Q + + E +LF+K G
Sbjct: 198 LLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 93/260 (35%), Gaps = 48/260 (18%)
Query: 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFK 74
N + +L L+ + P ++T L+GP SGK GK+ +G
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLV 84
Query: 75 EFVPPRTSAYVSQQDWQVAE------MTVRETLDFAGQCQGVGSKYDMITELARREKIAG 128
++ Y+ Q V + + RE + + +T E+I
Sbjct: 85 QY----DHHYLHTQVAAVGQEPLLFGRSFRENIAYG------------LTRTPTMEEITA 128
Query: 129 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 188
+ + F+ F G DT VG E ++ GQ++ +
Sbjct: 129 VAMESGAHDFISGFPQG--------------------YDTEVG-ETGNQLAVGQRQAVAL 167
Query: 189 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 248
L+ R+L +D ++ LD+ ++ + L S T ++ Q + E
Sbjct: 168 ARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHH 225
Query: 249 VILLSEGQIVYQGPRVSVLD 268
++ L EG + QG + +++
Sbjct: 226 ILFLKEGSVCEQGTHLQLME 245
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQET 770
+ L NV+ G + G +G+GK+TL+ ++AG +IE GD+ G K+
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYE 75
Query: 771 FARISGYCEQ-NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
R G Q + V + + F+ P + V++ ME V L
Sbjct: 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV----PLVKKAMEFVGL-DFDS 130
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
+P LS +++R+ IA +V P I+ +DEP GLD ++R V G
Sbjct: 131 FKDRVPFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRG 916
+T++ H + D ++ +++G
Sbjct: 189 KTVILISHDIET-VINHVDRVVVLEKG 214
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 152 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 211
+V+ M+ +GLD + D + +SGG+K+R+ ++V +L +DE GLD
Sbjct: 116 LVKKAMEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 212 TTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD--- 268
+++ ++ G TVI + D V++L +G+ V+ G R+ L+
Sbjct: 173 GKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
Query: 269 --FFAS 272
FF S
Sbjct: 231 PRFFTS 236
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRK----TGGIIE--GDIYISGYPKRQETFARISGY 777
PG + A++G +G+GK+TL LAGR+ TGG +E G ++ P+ + +
Sbjct: 25 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAF 84
Query: 778 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-- 835
Q + PG++ + L +A + S ET F + +L AL+ +P
Sbjct: 85 --QYPVEIPGVSN-QFFLQTALNAVRSYRGQETLDRF-----DFQDLMEEKIALLKMPED 136
Query: 836 ----GIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
+N G S ++KR I V P + +DE SGLD A +V V ++ + R
Sbjct: 137 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKR 196
Query: 891 TIVCTIH 897
+ + H
Sbjct: 197 SFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRK----TGGIIE--GDIYISGYPKRQETFARISGY 777
PG + A++G +G+GK+TL LAGR+ TGG +E G ++ P+ + +
Sbjct: 44 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAF 103
Query: 778 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-- 835
Q + PG++ + L +A + S ET F + +L AL+ +P
Sbjct: 104 --QYPVEIPGVSN-QFFLQTALNAVRSYRGQETLDRF-----DFQDLMEEKIALLKMPED 155
Query: 836 ----GIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
+N G S ++KR I V P + +DE SGLD A +V V ++ + R
Sbjct: 156 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKR 215
Query: 891 TIVCTIH 897
+ + H
Sbjct: 216 SFIIVTH 222
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 61/198 (30%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEG--------------------DIYISG 763
G + A++G +G GK+TL+D+L G R G IE DI + G
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMG 90
Query: 764 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
TFA+ + Q +++L + L E
Sbjct: 91 RSTHINTFAKPKSHDYQ--------VAMQALDYLNLTHLAKR-----------------E 125
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
TSLSG QR+ + IA + + ++ +DEPTS LD IV+ +
Sbjct: 126 FTSLSGG-------------QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Query: 884 NIVNT-GRTIVCTIHQPS 900
++ + T+V T HQP+
Sbjct: 173 DLAQSQNMTVVFTTHQPN 190
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 39/85 (45%)
Query: 154 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 213
+Y + + LD T + +SGGQ++ + + +++ +DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 214 YQIIKYLKHSTRALDGTTVISLLQP 238
++ L ++ + T V + QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 25/196 (12%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII----EGDIYISG----YP 765
++L ++ + + G +++G SG+GK+TL+ +L G++ EG +++ G Y
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL------GLLDAPTEGKVFLEGKEVDYT 71
Query: 766 KRQETF---ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 822
+E R G+ Q P LT LE+++ + E + + ++ L
Sbjct: 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LS 126
Query: 823 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
EL L L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 127 EL-GLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183
Query: 883 RNIVNTGRTIVCTIHQ 898
I G +IV H+
Sbjct: 184 LKINEGGTSIVMVTHE 199
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 154 EYIMKILGLDTCADTLVGDEMLKG---ISGGQKKRLTTGELLVGPARVLFMDEISNGLDS 210
EY++ LGL GD++ + +SGG+++R+ L +LF DE + LDS
Sbjct: 122 EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
Query: 211 STTYQIIK-YLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRV 264
+ T +++ +LK + +G T I ++ E EL + + +G++V + RV
Sbjct: 174 ANTKRVMDIFLKIN----EGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITRV 224
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETF 771
++L ++ G + L+G +GAGKTT + +++ + + GI+ ++ +
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--TVFGKNVVEEPHEV 86
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSG 829
++ Y + + +E L F A + SEIE +RA T ++G
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----------TEIAG 135
Query: 830 ALIGLPGINGLSTEQR---KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
+G + +ST + ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 136 --LGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 887 NTGRTIVCTIHQ 898
G TI+ + H
Sbjct: 194 QEGLTILVSSHN 205
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 180 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239
G +K L L+V P R+ +DE ++GLD ++ K LK +++ +G T++
Sbjct: 150 GMVRKLLIARALMVNP-RLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNM 206
Query: 240 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 290
E L D + L+ G IV G + + + K +N+ + +EV
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEELKERY--------KAQNIEEVFEEV 249
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY------------PKRQETF 771
+ G L+G SG GKTT + +AG + G IYI PK ++
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEP--TRGQIYIEDNLVADPEKGVFVPPKERDVA 87
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
Y P TV +++ F LR + E++ + V EV E + LT L L
Sbjct: 88 XVFQSYA-----LYPHXTVYDNIAFPLKLRKVPKQEIDKR---VREVAEXLGLTEL---L 136
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
P LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 137 NRKP--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++R+ G ++ +V DE + LD+ + LK R L G T I +
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL-GVTTIYVTH 201
Query: 238 PAPEAYELFDDVILLSEGQIVYQG 261
EA D + + ++G++ G
Sbjct: 202 DQVEAXTXGDRIAVXNKGELQQVG 225
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 44/299 (14%)
Query: 649 RRKGENVVIELREY---LQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQ 705
R GE ++I+ Y +Q +S K PF +S+ V++P +L +
Sbjct: 47 RMGGEAIIIDEENYKPIIQEASCTGCGICVHK---CPFNAISI--------VNLPEQLDE 95
Query: 706 EGVLEDRLQLLVNVTGAFR-----PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--- 757
+ V + VN +R G++ +VG +G GKTT + +LAG+ + E
Sbjct: 96 DCVH----RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 758 -DIYISGY--PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAF 814
D I + + Q F R+ E + P L LP ++ + +
Sbjct: 152 WDNVIRAFRGNELQNYFERLKN-GEIRPVVKPQYVDL----------LPKAVKGKVRELL 200
Query: 815 --VEEVMELVELTSLSGALIGLP-GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
V+EV + E+ L ++ LS + +R+ IA L+ F DEP+S LD
Sbjct: 201 KKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
Query: 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSI-DIFESFDELLFMKRGGELIYAGPLGSKS 929
R V R +R + N G+ ++ H ++ D +++ + G I++ P G+++
Sbjct: 261 IRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN 319
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 31/234 (13%)
Query: 683 FQPLSMAFGNINYFVDVPVE--LKQEGVLEDRLQLLVNVT-GAFRPGVLTALVGVSGAGK 739
F+P + F ++ VDV E ++ +++D + V G R G + +VG +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 740 TTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFS 797
TT + +LAG T G +E D+ ++ P Q A G TV E L
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELLSKI 441
Query: 798 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 857
+L S + E+++ + + L + LS + +R+ IA L+ +
Sbjct: 442 DSSKLNSNF-------YKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRD 489
Query: 858 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL 911
I +DEP++ LD V R +R+++ + + I D L+
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 543
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 21/216 (9%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG----DIYISGY--PKRQETFARISGY 777
+ G++ +VG +G GKTT + +LAG+ + E D I + + Q F R+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN- 159
Query: 778 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAF--VEEVMELVELTSLSGALIGLP 835
E + P L LP ++ + + V+EV + E+ L
Sbjct: 160 GEIRPVVKPQYVDL----------LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 209
Query: 836 -GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 894
++ LS + +R+ IA L+ F DEP+S LD R V R +R + N G+ ++
Sbjct: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
Query: 895 TIHQPSI-DIFESFDELLFMKRGGELIYAGPLGSKS 929
H ++ D +++ + G I++ P G+++
Sbjct: 270 VEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN 305
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 31/234 (13%)
Query: 683 FQPLSMAFGNINYFVDVPVE--LKQEGVLEDRLQLLVNVT-GAFRPGVLTALVGVSGAGK 739
F+P + F ++ VDV E ++ +++D + V G R G + +VG +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 740 TTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFS 797
TT + +LAG T G +E D+ ++ P+ + + Y + I S + L S +
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDS---SKLNSNFYK 438
Query: 798 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 857
L P + +++L + + LS + +R+ IA L+ +
Sbjct: 439 TELLKP---------------LGIIDLYDRN--------VEDLSGGELQRVAIAATLLRD 475
Query: 858 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL 911
I +DEP++ LD V R +R+++ + + I D L+
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L +T + G L A+VG G GK++L+ L +EG + I G A I
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKGSVAYVPQQAWI- 77
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SG--ALI 832
QND ++ E++LF L P R+ ++ L +L L SG I
Sbjct: 78 ----QND------SLRENILFGCQLEEP------YYRSVIQACALLPDLEILPSGDRTEI 121
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
G G+N LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 122 GEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 33/224 (14%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG---------YP 765
+L +++ + PG + ++G SG GKTTL+ LAG + G+I +SG P
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 766 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
R+ R GY Q + P LTV ++ + + +R +E ++EL ++
Sbjct: 77 VRE----RRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQERQRIEAMLELTGIS 129
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN- 884
L+G + LS Q++R +A L +P ++ +DEP S LD + + R +R
Sbjct: 130 ELAGRY-----PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIRED 180
Query: 885 ----IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+ G++ V H + + D + MK+G L A P
Sbjct: 181 MIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASP 223
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARISGYCEQND 782
G + L+G +GAGKTT + +AG + G II I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 783 IHSPGLTVLESLLFSAWLRLPSE---IELETQRAFVEEVMELVELTSLSGALIGLPGING 839
I P LTV E+L A+ R E +LE + + E L L G L G
Sbjct: 92 IF-PELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLKQLGGTLSG------ 142
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 893
+++ L I L + P ++ DEP+ GL + V ++ I G TI+
Sbjct: 143 ---GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDS---STTYQIIKYLKHSTRALDGTTVIS 234
+SGG+++ L G L ++L DE S GL S +++I+ + +GTT++
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ-----EGTTILL 194
Query: 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268
+ Q A A ++ +L GQIV +G +LD
Sbjct: 195 VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 21/182 (11%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TGGIIE-- 756
++L Q G + +L ++ G L G++GAGKTTL+++L + T G +
Sbjct: 22 IQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 757 ----GDIYISGYPKRQETFARISGYCEQNDIH--SPGLTVLESLLFSAWLRLPSEIELET 810
G + S RQ G+ + + G V++ ++ A+ + +++
Sbjct: 82 GKXPGKVGYSAETVRQHI-----GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD 136
Query: 811 Q-RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869
+ R ++++LV ++ + IG LST +++R+ IA L P ++ +DEP +G
Sbjct: 137 EIRNEAHQLLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAG 191
Query: 870 LD 871
LD
Sbjct: 192 LD 193
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 156 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 215
++K++G A +G +S G+K+R+ L G +VL +DE + GLD
Sbjct: 145 LLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARES 199
Query: 216 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGF 275
++ L + + I + E F ++LL +GQ + QG +V D S
Sbjct: 200 LLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQG---AVEDILTSENX 256
Query: 276 SCPKRKNVA 284
S +KNVA
Sbjct: 257 SRFFQKNVA 265
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 97/213 (45%), Gaps = 15/213 (7%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII------EGDIYISGYPKRQETFARISGY 777
+ G + +VG +G GK+T + +LAG+ + +G I + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 778 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGI 837
+ + + ++ + + L ++ + +EEV++ +EL ++ I
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIEL---LKKADETGKLEEVVKALELENVLER-----EI 156
Query: 838 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++++ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 898 QPSI-DIFESFDELLFMKRGGELIYAGPLGSKS 929
++ D +++ + G I++ P G+++
Sbjct: 217 DLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN 249
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 28/185 (15%)
Query: 721 GAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYC 778
G + G + +VG +G GKTT + LAG T G IE D+ ++ P+ + + Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 779 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
+ I + + L S + L P + +++L +N
Sbjct: 367 LLSKIDA---SKLNSNFYKTELLKP---------------LGIIDLYDRE--------VN 400
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS + +R+ IA L+ + I +DEP++ LD V R +R++ +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 899 PSIDI 903
+ I
Sbjct: 461 DVLXI 465
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 778
++G R G + LVG +GAGK+TL+ +AG +G +G I +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 779 EQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
+H L+ ++ F+ W L +T+ + +V + L G
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----S 123
Query: 837 INGLSTEQRKRLTIAVELV-----ANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
N LS + +R+ +A ++ ANP+ ++ +D+P + LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQG 183
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
IV + H + + + L +GG+++ +G
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 778
++G R G + LVG +GAGK+TL+ AG +G +G I +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 779 EQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
+H L+ ++ F+ W L +T+ + +V + L G
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----S 123
Query: 837 INGLSTEQRKRLTIAVELV-----ANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
N LS + +R+ +A ++ ANP+ ++ +DEP + LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQG 183
Query: 890 RTIVCTIH 897
IV + H
Sbjct: 184 LAIVXSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 778
++G R G + LVG +GAGK+TL+ +AG +G +G I +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 779 EQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
+H L+ ++ F+ W L +T+ + +V + L G
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----S 123
Query: 837 INGLSTEQRKRLTIAVELV-----ANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
N LS + +R+ +A ++ ANP+ ++ +D+P LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQG 183
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
IV + H + + + L +GG+++ +G
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 778
++G R G + LVG +GAGK+TL+ AG +G +G I +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 779 EQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
+H L+ ++ F+ W L +T+ + +V + L G
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----S 123
Query: 837 INGLSTEQRKRLTIAVELV-----ANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
N LS + +R+ +A ++ ANP+ ++ +DEP + LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQG 183
Query: 890 RTIVCTIH 897
IV + H
Sbjct: 184 LAIVXSSH 191
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 28/166 (16%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGII-EGDIYISGYPKRQETF 771
L N++ G ++G +GAGKT ++++AG +G I+ +G P++ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI- 74
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRL---PSEIELETQRAF-VEEVMELVELTSL 827
+ QN P + V ++L F ++ P + L+T R +E +++ LT
Sbjct: 75 ----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV-LDTARDLKIEHLLDRNPLT-- 127
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 128 ------------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 91/243 (37%), Gaps = 51/243 (20%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRT 81
LD+LS + ++LGP +GK SG+I +G + P +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 82 S-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 140
A+V Q M V++ L+F R +KI P LD
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFG----------------MRMKKIK--DPKRVLDT--- 111
Query: 141 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 200
L +E++ LD TL SGG+++R+ LV ++L
Sbjct: 112 -------ARDLKIEHL-----LDRNPLTL---------SGGEQQRVALARALVTNPKILL 150
Query: 201 MDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 258
+DE + LD T + L H L TV+ + EA + D + ++ +G+++
Sbjct: 151 LDEPLSALDPRTQENAREMLSVLHKKNKL---TVLHITHDQTEARIMADRIAVVMDGKLI 207
Query: 259 YQG 261
G
Sbjct: 208 QVG 210
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 29/162 (17%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY------PKRQETFARISGYCEQN 781
L+G +GAGK+ ++++AG I++ G++ ++G P+R R G+ Q+
Sbjct: 29 LLGPTGAGKSVFLELIAG-----IVKPDRGEVRLNGADITPLPPER-----RGIGFVPQD 78
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 841
P L+V ++ + LR +E + + + E + + L A LS
Sbjct: 79 YALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------LS 128
Query: 842 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
+R+R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGG+++R+ LV R+L +DE + +D T +++ L+ R D ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTH 185
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
EA L D+V ++ G+IV +G + + F++ K VA+FL
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG---KLKELFSA------KNGEVAEFL 226
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAW--LRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
S +C QN PG T+ E+++ ++ R S I+ E++ + E ++ ++
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIK---ACQLEEDISKFAEKDNI---VL 153
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGR 890
G GI LS QR R+++A + + + +D P LD + + + + N R
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922
+V + ++ + D++L + G Y
Sbjct: 213 ILVTS----KMEHLKKADKILILHEGSSYFYG 240
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAW--LRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
S +C QN PG T+ E+++ ++ R S I+ E++ + E ++ ++
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIK---ACQLEEDISKFAEKDNI---VL 153
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGR 890
G GI LS QR R+++A + + + +D P LD + + + + N R
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922
+V + ++ + D++L + G Y
Sbjct: 213 ILVTS----KMEHLKKADKILILHEGSSYFYG 240
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 775 SGYCEQNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLS 828
S +C Q PG T+ E+++F + + +LE E++ + E ++
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLE------EDISKFAEKDNI- 134
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIV 886
++G GI LS QR R+++A + + + +D P LD + + + +
Sbjct: 135 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922
N R +V + ++ + D++L + G Y
Sbjct: 192 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 223
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L N++ + PG L+G +G+GK+TL+ EG+I I G T +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVE-EVMELVELTSLSGALIG 833
+ G+ + +FS R L+ A + E+ ++ + L +
Sbjct: 93 R--------KAFGVIPQKVFIFSGTFRK----NLDPNAAHSDQEIWKVADEVGLRSVIEQ 140
Query: 834 LPG------ING---LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
PG ++G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200
Query: 885 IVNTGRTIVC 894
I+C
Sbjct: 201 AFADCTVILC 210
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+S G K+ + ++ A++L +DE S LD TYQII+ + +A TVI L +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLD-PVTYQIIR--RTLKQAFADCTVI-LCE 211
Query: 238 PAPEAYELFDDVILLSEGQI 257
EA D +++ E ++
Sbjct: 212 ARIEAMLECDQFLVIEENKV 231
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 30/171 (17%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 790
+ G +G GK+TLM +A + + G+P ++E + Y E + + T
Sbjct: 466 ICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDTS 512
Query: 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 850
+ +F E + T+ A ++++E + +I +P I+ LS + +L +
Sbjct: 513 VLDFVF--------ESGVGTKEAIKDKLIEF----GFTDEMIAMP-ISALSGGWKMKLAL 559
Query: 851 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 901
A ++ N I+ +DEPT+ LD A ++ N +NT TI S+
Sbjct: 560 ARAVLRNADILLLDEPTNHLDTVNVAWLV----NYLNTCGITSITISHDSV 606
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 816 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
+E+ E + L ++ I GLS Q+ +L +A P ++ +DEPT+ LD
Sbjct: 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 136 DIFMKSFALGGQKTSLV---VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 192
++ MK GQ L +E +LGLD +V ++G+SGGQK +L
Sbjct: 860 EVDMKEALASGQFRPLTRKEIEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGT 916
Query: 193 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252
++ +DE +N LD + + K LK +G +I + A L ++V +
Sbjct: 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKE----FEGGVII-ITHSAEFTKNLTEEVWAV 971
Query: 253 SEGQIVYQG 261
+G++ G
Sbjct: 972 KDGRMTPSG 980
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 33/148 (22%)
Query: 172 DEML----KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 227
DEM+ +SGG K +L ++ A +L +DE +N LD+ ++ YL
Sbjct: 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC---- 594
Query: 228 DGTTVISLLQPAPEAYELFDDVIL--LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVAD 285
G T I++ D V L + E I Y+G ++ + N +
Sbjct: 595 -GITSITISH---------DSVFLDNVCEYIINYEGLKLRKY------------KGNFTE 632
Query: 286 FLQEVTSKKDQEQYWSNPYLPYRYISPG 313
F+++ + K E+ SN L +++ PG
Sbjct: 633 FVKKCPAAKAYEEL-SNTDLEFKFPEPG 659
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 23/210 (10%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
S +C Q PG T+ E+++F E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 892
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 893 VCTIHQPSIDIFESFDELLFMKRGGELIYA 922
V + ++ D++L + +G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 23/210 (10%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
S +C Q PG T+ E+++F E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 892
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 893 VCTIHQPSIDIFESFDELLFMKRGGELIYA 922
V + ++ D++L + +G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 840 LSTEQRKRLTIAVELVAN--PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
LS + +RL +A +L +N + +DEP++GL ++ + N+ G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 898 QPSIDIFESFDELLFM-----KRGGELIYAGP 924
+D+ D L+ + ++GGE++Y+GP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANP---SIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
+G P LS + +R+ +A EL + ++ +DEPT+GL + R + +V+
Sbjct: 724 LGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 889 GRTIVCTIHQPSIDIFESFDELLFM-----KRGGELIYAG 923
G T++ H+ + + + D +L + + GG L+ G
Sbjct: 783 GNTVIAVEHK--MQVVAASDWVLDIGPGAGEDGGRLVAQG 820
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 775 SGYCEQNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLS 828
S +C Q PG T+ E+++F + + +LE E++ + E ++
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLE------EDISKFAEKDNI- 122
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIV 886
++G GI LS QR R+++A + + + +D P LD + + + +
Sbjct: 123 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922
N R +V + ++ + D++L + G Y
Sbjct: 180 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 211
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANP---SIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
+G P LS + +R+ +A EL ++ +DEPT+GL A ++ + +V+
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 889 GRTIVCTIHQPSIDIFESFDELLFM-----KRGGELIYAG 923
G T++ H ++D+ ++ D ++ + RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 763 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV---- 818
GY ++E+ A + G ++ + +V E+L F L L +E E + R + E+
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTA--XSVTEALAFFDGLEL-TEKEAQIARLILREIRDRL 485
Query: 819 -------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
++ + L+ +G L G QR RL + + +DEP+ GL
Sbjct: 486 GFLQNVGLDYLTLSRSAGTLSG-------GEAQRIRLATQIGSRLTGVLYVLDEPSIGLH 538
Query: 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAG 923
R ++ T+++ + G T++ H D + D L+ + GGE++ AG
Sbjct: 539 QRDNDRLIATLKSXRDLGNTLIVVEHDE--DTXLAADYLIDIGPGAGIHGGEVVAAG 593
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANP---SIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
+G P LS + +R+ +A EL ++ +DEPT+GL A ++ + +V+
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 889 GRTIVCTIHQPSIDIFESFDELLFM-----KRGGELIYAG 923
G T++ H ++D+ ++ D ++ + RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 763 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV---- 818
GY ++E+ A + G ++ + ++V E+L F L L +E E + R + E+
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTA--MSVTEALAFFDGLEL-TEKEAQIARLILREIRDRL 485
Query: 819 -------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
++ + L+ +G L G QR RL + + +DEP+ GL
Sbjct: 486 GFLQNVGLDYLTLSRSAGTLSG-------GEAQRIRLATQIGSRLTGVLYVLDEPSIGLH 538
Query: 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAG 923
R ++ T++++ + G T++ H D + D L+ + GGE++ AG
Sbjct: 539 QRDNDRLIATLKSMRDLGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAG 593
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
S +C Q PG T+ E+++ ++ E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSY----DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 155
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 892
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 156 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 214
Query: 893 VCTIHQPSIDIFESFDELLFMKRGGELIYA 922
V + ++ D++L + +G Y
Sbjct: 215 VTS----KMEHLRKADKILILHQGSSYFYG 240
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 36.6 bits (83), Expect = 0.077, Method: Composition-based stats.
Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 27/259 (10%)
Query: 700 PVELKQEGVLEDRLQ---LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 756
PV L + L +Q L+ +V+ G + A++G +GAGK+TL+ +L G +
Sbjct: 8 PVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--H 65
Query: 757 GDIYISGY---PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 813
G+ ++ G + + AR Q + +V E + R P + Q
Sbjct: 66 GECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG---RAPYGGSQDRQA- 121
Query: 814 FVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSIVFMDEPT 867
+++VM + +L+ LS +++R+ +A L P +F+DEPT
Sbjct: 122 -LQQVMAQTDCLALAQR-----DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT 175
Query: 868 SGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926
S LD +R +R + + C +H ++ + D ++ + +G + P
Sbjct: 176 SALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKLVACGTPEE 234
Query: 927 SKSCE-LIKYFEAVEGVPK 944
+ E L ++++A GV +
Sbjct: 235 VLNAETLTQWYQADLGVSR 253
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 840 LSTEQRKRLTIAVEL---VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 896
LS + +R+ +A EL ++ +DEPT+GL A ++ + +V+ G T++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 897 HQPSIDIFESFDELLFM-----KRGGELIYAG 923
H ++D+ ++ D ++ + RGG+++ G
Sbjct: 604 H--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 26/152 (17%)
Query: 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEV-----------MELVELTSLSGALIGLPG 836
++V E+L F L L +E E + R + E+ ++ + L+ +G L G
Sbjct: 150 MSVTEALAFFDGLEL-TEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSG--- 205
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 896
QR RL + + +DEP+ GL R ++ T++++ + G T++
Sbjct: 206 ----GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261
Query: 897 HQPSIDIFESFDELLFMK-----RGGELIYAG 923
H D + D L+ + GGE++ AG
Sbjct: 262 HDE--DTMLAADYLIDIGPGAGIHGGEVVAAG 291
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 28/212 (13%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAW--LRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
S +C Q PG T+ E+++ ++ R S I+ E++ + E ++ ++
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIK---ACQLEEDISKFAEKDNI---VL 123
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGR 890
G GI LS QR R+++A + + + +D P LD + + + + N R
Sbjct: 124 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 182
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922
+V + ++ + D++L + G Y
Sbjct: 183 ILVTS----KMEHLKKADKILILHEGSSYFYG 210
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 25/169 (14%)
Query: 728 LTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISG---YPKRQETFARIS------- 775
+TA+VG S +GK+T+++ + G I+ G + G R+E +I
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR----AFVEEVMELVELTSLSGAL 831
Q + +P + V+E +E R +E+ E + + L+
Sbjct: 96 PQAAQQSL-NPTMKVIE--------HFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA 146
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
+ LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 147 VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLS 828
S +C Q PG T+ E+++F + + +LE E++ + E ++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLE------EDISKFAEKDNI- 152
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIV 886
++G GI LS Q+ ++++A + + + +D P LD + + + +
Sbjct: 153 --VLGEGGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922
N R +V + ++ + D++L + G Y
Sbjct: 210 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 241
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLS 828
S +C Q PG T+ E+++ + + +LE E++ + E ++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLE------EDISKFAEKDNI- 152
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIV 886
++G GI LS QR R+++A + + + +D P LD + + + +
Sbjct: 153 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922
N R +V + ++ + D++L + G Y
Sbjct: 210 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 241
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
S +C Q PG T+ E+++ E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIISGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 892
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 893 VCTIHQPSIDIFESFDELLFMKRGGELIYA 922
V + ++ D++L + +G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
S +C Q PG T+ E+++ E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIRGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 892
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 893 VCTIHQPSIDIFESFDELLFMKRGGELIYA 922
V + ++ D++L + +G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 26/166 (15%)
Query: 822 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
+E SLS A L G QR RL + + +DEP+ GL R ++ T
Sbjct: 510 LEYLSLSRAAATLSG----GEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIET 565
Query: 882 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFM-----KRGGELIYAGPLGSKSCELIKYF 936
+ + + G T++ H D E D ++ + + GG ++++GP EL++
Sbjct: 566 LTRLRDLGNTLIVVEHDE--DTIEHADWIVDIGPGAGEHGGRIVHSGPYD----ELLRNK 619
Query: 937 EAVEG----------VPKIRPGYNPAAWMLEVTSPVEESRLGVDFA 972
+++ G +P IR +P L V E + G+D +
Sbjct: 620 DSITGAYLSGRESIEIPAIRRSVDP-RRQLTVVGAREHNLRGIDVS 664
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 661 EYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVT 720
E L+ S+ G Y + S+ I VD +L G E L+ +
Sbjct: 614 ELLRNKDSITGAYLSGRE--------SIEIPAIRRSVDPRRQLTVVGAREHNLR---GID 662
Query: 721 GAFRPGVLTALVGVSGAGKTTLM-DVLA 747
+F GVLT++ GVSG+GK+TL+ D+LA
Sbjct: 663 VSFPLGVLTSVTGVSGSGKSTLVNDILA 690
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 840 LSTEQRKRLTIAVELVANPS---IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 896
LS + +R+ +A EL + + +DEPT+GL ++ + +V+ G T++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 897 HQPSIDIFESFD 908
H ++D+ ++ D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 30/171 (17%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 790
+ G +G GK+TL +A + + G+P ++E + Y E + + T
Sbjct: 466 ICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDTS 512
Query: 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 850
+ +F E + T+ A ++++E + I P I+ LS + +L +
Sbjct: 513 VLDFVF--------ESGVGTKEAIKDKLIEF----GFTDEXIAXP-ISALSGGWKXKLAL 559
Query: 851 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 901
A ++ N I+ +DEPT+ LD A ++ N +NT TI S+
Sbjct: 560 ARAVLRNADILLLDEPTNHLDTVNVAWLV----NYLNTCGITSITISHDSV 606
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 816 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
+E+ E L ++ I GLS Q+ +L +A P ++ +DEPT+ LD
Sbjct: 878 KEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 175 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234
+ +SGG K +L ++ A +L +DE +N LD+ ++ YL G T I+
Sbjct: 546 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC-----GITSIT 600
Query: 235 LLQPAPEAYELFDDVIL--LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 292
+ D V L + E I Y+G ++ + N +F+++ +
Sbjct: 601 ISH---------DSVFLDNVCEYIINYEGLKLRKY------------KGNFTEFVKKCPA 639
Query: 293 KKDQEQYWSNPYLPYRYISPG 313
K E+ SN L +++ PG
Sbjct: 640 AKAYEEL-SNTDLEFKFPEPG 659
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 153 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 212
+E LGLD +V ++G+SGGQK +L ++ +DE +N LD +
Sbjct: 880 IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Query: 213 TYQIIKYLK 221
+ K LK
Sbjct: 937 LGALSKALK 945
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate
Regulatory Protein (Bt4638) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 910
MD+ G+++ A IV+ R I +G+ + IH+ +I+I ++ DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 30/171 (17%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 790
+ G +G GK+TL +A + + G+P ++E + Y E + + T
Sbjct: 460 ICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDTS 506
Query: 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 850
+ +F E + T+ A ++++E + I P I+ LS + +L +
Sbjct: 507 VLDFVF--------ESGVGTKEAIKDKLIEF----GFTDEXIAXP-ISALSGGWKXKLAL 553
Query: 851 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 901
A ++ N I+ +DEPT+ LD A ++ N +NT TI S+
Sbjct: 554 ARAVLRNADILLLDEPTNHLDTVNVAWLV----NYLNTCGITSITISHDSV 600
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 816 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
+E+ E L ++ I GLS Q+ +L +A P ++ +DEPT+ LD
Sbjct: 872 KEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 175 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234
+ +SGG K +L ++ A +L +DE +N LD+ ++ YL G T I+
Sbjct: 540 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC-----GITSIT 594
Query: 235 LLQPAPEAYELFDDVIL--LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 292
+ D V L + E I Y+G ++ + N +F+++ +
Sbjct: 595 ISH---------DSVFLDNVCEYIINYEGLKLRKY------------KGNFTEFVKKCPA 633
Query: 293 KKDQEQYWSNPYLPYRYISPG 313
K E+ SN L +++ PG
Sbjct: 634 AKAYEEL-SNTDLEFKFPEPG 653
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 153 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 212
+E LGLD +V ++G+SGGQK +L ++ +DE +N LD +
Sbjct: 874 IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 930
Query: 213 TYQIIKYLK 221
+ K LK
Sbjct: 931 LGALSKALK 939
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 23/144 (15%)
Query: 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 847
+TV E+L F + +PS ++ ++++ L +G P LS + +R
Sbjct: 767 MTVDEALEF--FKNIPS----------IKRTLQVLHDVGLGYVKLGQPATT-LSGGEAQR 813
Query: 848 LTIAVELVANPS---IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 904
+ +A EL + + +DEPT GL ++ + +V+ G T++ H ++D+
Sbjct: 814 IKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH--NLDVI 871
Query: 905 ESFDELLFM-----KRGGELIYAG 923
++ D ++ + K GG ++ G
Sbjct: 872 KNADHIIDLGPEGGKEGGYIVATG 895
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 807 ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866
E+E + F+ +V +E +LS + L G QR RL + I +DEP
Sbjct: 440 EIEKRLEFLVDVG--LEYLTLSRSATTLSG----GESQRIRLATQIGSGLTGVIYVLDEP 493
Query: 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 901
T GL R +++T++ + + G T++ H +
Sbjct: 494 TIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 28/183 (15%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 789
++G +G+GKTTL+ ++G G+I+I+G R+ + R S + + G+T
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 790 VLESL-LFSAWLRLPSEIELETQRAFV--EEVMELVELTSLSGALIGLPGINGLSTEQRK 846
V + + L+ L ++ LE +A EE++ +L LS G S R
Sbjct: 90 VNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRR-KLYKLSA---------GQSVLVRT 139
Query: 847 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 906
L +A + P IV +DEP +DA ++ R ++ G+ + H+ +D+
Sbjct: 140 SLALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--LDMLNL 190
Query: 907 FDE 909
+ E
Sbjct: 191 YKE 193
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 28/212 (13%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAW--LRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
S +C Q PG T+ E+++ ++ R S I+ E++ + E ++ ++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIK---ACQLEEDISKFAEKDNI---VL 153
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGR 890
G GI LS Q+ ++++A + + + +D P LD + + + + N R
Sbjct: 154 GEGGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922
+V + ++ + D++L + G Y
Sbjct: 213 ILVTS----KMEHLKKADKILILHEGSSYFYG 240
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG 752
L++L +T +P V+ A+VG+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
Query: 452 WVYTIPSWALSIPTSLIESGFWVAVTYYVI-----GYDP--NVVRFSRQLLLYFFLHQMS 504
W + S L +P L+ G+W + +DP F L YF + + +
Sbjct: 312 WPAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESN 371
Query: 505 IGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNA 564
F+ G +VA G A + G ++SR PK + G W P Y+++
Sbjct: 372 ---FQDDGDYSDKNMVARLNGELADTL-----GNLVSRCVAPKINVNGMWPEPAEYSESD 423
Query: 565 ----ASVNEFLG 572
AS+N G
Sbjct: 424 KTLIASLNNLAG 435
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 19/174 (10%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L +T G + G +G GKTTL+ ++ ++G+I +G P ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP-----ITKV 76
Query: 775 SG--YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
G + +I P +E L + + S ++ + + + +E VE+ L L
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKA----VASLYGVKVNKNEIMDALESVEVLDLKKKL- 131
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
LS +R+ +A L+ N I +D+P +D + V++++ I+
Sbjct: 132 -----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG 752
+ L++L +T +P V+ A+VG+ GK+ LM+ LAG+K G
Sbjct: 37 EALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|4E04|A Chain A, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis.
pdb|4E04|B Chain B, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis
Length = 327
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 778 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPG 836
C+ IH PG LL + L V L ELT L+ GALIG
Sbjct: 15 CDDEPIHIPGAIQPHGLLLA----------LAADMTIVAGSDNLPELTGLAIGALIGRSA 64
Query: 837 INGLSTEQRKRLTIAV 852
+ +E RLTIA+
Sbjct: 65 ADVFDSETHNRLTIAL 80
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 721 GAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGI----IEGDIYISGYPKRQETFARIS 775
G RP VL +VGV+G GKTT + LA R K G+ GD + + ++ E +A+ +
Sbjct: 112 GNSRPAVLM-IVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEVWAQRT 170
Query: 776 G 776
G
Sbjct: 171 G 171
>pdb|2INB|A Chain A, Crystal Structure Of An Xish Family Protein
(Zp_00107633.1) From Nostoc Punctiforme Pcc 73102 At
1.60 A Resolution
Length = 140
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 650 RKGENVVIELREYLQRSSSLN------GKYFKQKGMVLPFQP---LSMAFGNINYFVDVP 700
R+GE + +E++ +L+RSS+++ G++ +G + QP L +A Y
Sbjct: 51 REGEKIAVEVKSFLERSSAISEFHTALGQFINYRGALRRRQPERVLYLAVPLTTYKTFFQ 110
Query: 701 VELKQEGVLEDRLQLLV 717
++ +E + E++++ L+
Sbjct: 111 LDFPKEXIAENQVKXLI 127
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDI-YISGYPKRQETFARISGYCEQND-I 783
G ++ G SG GK++L++ L G + I+ D+ +SG + T AR+ + D I
Sbjct: 215 GRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQHTTTAARLYHFPHGGDVI 273
Query: 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVE 816
SPG+ F W P +I + FVE
Sbjct: 274 DSPGVRE-----FGLWHLEPEQI----TQGFVE 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,052,560
Number of Sequences: 62578
Number of extensions: 1233367
Number of successful extensions: 3214
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2884
Number of HSP's gapped (non-prelim): 300
length of query: 1065
length of database: 14,973,337
effective HSP length: 109
effective length of query: 956
effective length of database: 8,152,335
effective search space: 7793632260
effective search space used: 7793632260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)