Query 001507
Match_columns 1065
No_of_seqs 294 out of 4893
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 17:06:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001507.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_807-811//hhsearch_pdb/001507hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 692.1 43.9 791 4-926 416-1300(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 620.9 48.9 794 6-926 390-1254(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 479.4 35.0 448 7-928 95-561 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 470.2 32.8 447 7-927 25-490 (538)
5 2iw3_A Elongation factor 3A; a 1.0 1 1 462.7 31.2 428 18-924 447-981 (986)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 462.3 35.3 216 16-266 28-296 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 455.3 35.7 203 714-939 282-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 446.5 30.8 202 714-940 361-569 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 353.9 12.3 214 686-926 414-637 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 352.9 32.4 198 714-926 598-898 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=692.14 Aligned_cols=791 Identities=19% Similarity=0.223 Sum_probs=394.7
Q ss_pred HHHHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCC
Q ss_conf 89888415047753210133733788386699994699999689998994696999714589998893588888---984
Q 001507 4 ALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPR 80 (1065)
Q Consensus 4 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~---~~~ 80 (1065)
+.++|+.|.++.+++.++|+|+|+.+++|++++|+||+|||||||+++|.|++.|. +|+|.+||.++++.. .++
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHH
T ss_pred EEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHH
T ss_conf 79998554079999874333318862288278998058985778888754565164---486157996501125999850
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 17887543456888998999999854149888612437988998861899991257898653116885026899999991
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~l 160 (1065)
.++||+|++|++.. |++|||.|+.. ...++.+.++|+.... +.. +-
T Consensus 493 ~i~~v~Q~~~Lf~~-TI~eNI~~g~~----~~~~~~v~~a~~~a~l---------------------------~~~--i~ 538 (1321)
T 4f4c_A 493 NVAVVSQEPALFNC-TIEENISLGKE----GITREEMVAACKMANA---------------------------EKF--IK 538 (1321)
T ss_dssp HEEEECSSCCCCSE-EHHHHHHTTCT----TCCHHHHHHHHHHTTC---------------------------HHH--HH
T ss_pred CCCCCCCCCEEECC-CHHHHHHHHCC----CCHHHHHHHHHHHCCC---------------------------HHH--HH
T ss_conf 46665875332078-61678864155----2209999999987565---------------------------468--87
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 98543444336865544760013467999998469808787379878795989999999999876079889999537964
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~ 240 (1065)
.|++++||.||++|. +||||||||++||||+|++|+|++||||||+||++++..+.+.++++.+ ++|+|+..|+.+
T Consensus 539 ~lp~G~~T~vGe~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls- 614 (1321)
T 4f4c_A 539 TLPNGYNTLVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS- 614 (1321)
T ss_dssp HSTTTTSSEESSSSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTT-
T ss_pred CCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCHH-
T ss_conf 088888607558988-7777787999999987259998998455446887899999999999847--988999736387-
Q ss_pred HHHHHCCCEEEECCCCEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCC--CCCHHC--CCCCCCCCCC------CC
Q ss_conf 7994114089952890778858000899987179999999994679987328--400000--0259999988------89
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS--KKDQEQ--YWSNPYLPYR------YI 310 (1065)
Q Consensus 241 ~~~~lfD~I~iL~~G~iv~~G~~~~l~~~f~~~G~~~p~~~~~ad~l~~~~~--~~~~~~--~~~~~~~~~~------~~ 310 (1065)
....+|+|++|++|+++++|+++++... ....++....... ..+... .......... ..
T Consensus 615 -~i~~aD~Iivl~~G~ive~Gth~eL~~~----------~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1321)
T 4f4c_A 615 -TIRNADLIISCKNGQVVEVGDHRALMAQ----------QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGL 683 (1321)
T ss_dssp -TTTTCSEEEEEETTEEEEEECHHHHHTT----------TCHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred -HHHHCCEEEEEECCEEECCCCHHHHHHH----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -8986898999639965136899999985----------32799999962212222332334433223211122222342
Q ss_pred C--HHHHHHHHHHCHHHHHHHHHHCCCC-C--CCCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 9--5489999982722110488612876-6--77799555--------45698888579999999999999975062589
Q 001507 311 S--PGKFAEAFHSYHTGKNLSEELAVPF-D--RRFNHPAA--------LSTSKYGEKRSELLKTSFNWQLLLMKRNSFIY 377 (1065)
Q Consensus 311 ~--~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~ 377 (1065)
. ..+..+....... .........+. + ........ .......... .+ .....+..+..
T Consensus 684 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~ 753 (1321)
T 4f4c_A 684 SRQASEMDDIMNRVRS-STIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNL--------FE-ILYHARPHALS 753 (1321)
T ss_dssp ---------------------------------CCCCCCHHHHHHHTTTTSCCCCCCH--------HH-HHHHTGGGHHH
T ss_pred CCCCCCCCCHHHHHHC-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEH--------HH-HHHHHHHHHHH
T ss_conf 2222221102211101-32124567740257775315403899999999707863109--------99-99998778999
Q ss_pred -HHHHHHHHHH-------HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHCCHHHHHHHCCC
Q ss_conf -9999999999-------99998875245788875466300468999999999--9977999999760002221210186
Q 001507 378 -VFKFIQLLIV-------ALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVII--LFNGFTEVSMLVAKLPVLYKHRDLH 447 (1065)
Q Consensus 378 -~~~~~~~~~~-------~l~~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 447 (1065)
+...+...+. ..+.+..................+....|+.+... ++..+.......
T Consensus 754 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~------------- 820 (1321)
T 4f4c_A 754 LFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGI------------- 820 (1321)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_conf 9999999999999999999999999987517934556678999999999999999999999999999-------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC--CCHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----CC
Q ss_conf 65526789988889864999988888766533246-55--6344679999999-----9999999999987765----25
Q 001507 448 FYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG-YD--PNVVRFSRQLLLY-----FFLHQMSIGLFRVIGS----LG 515 (1065)
Q Consensus 448 ~y~~~~~~~~~~~~~~p~~~l~~~~~~~i~y~l~g-~~--~~~~~f~~~~l~~-----~~~~~~~~~~~~~i~~----~~ 515 (1065)
...+....+...++..++...+.||-.. .+ .-..+|....-.. .....+...+..+++. +.
T Consensus 821 -------~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~ 893 (1321)
T 4f4c_A 821 -------ASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893 (1321)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHH
T ss_conf -------9999999999999888734993332167888488885025059999999999999999986537777022137
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCH-HHHHHHHH----HHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 786788888999999998763211179995313578582469-99999999----9875069955546889886503677
Q 001507 516 RNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSP-LMYAQNAA----SVNEFLGHSWDKKAGNSNFSLGEAI 590 (1065)
Q Consensus 516 ~~~~~a~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~yi~p-~~y~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~ 590 (1065)
.+...+.+ .+..++++.+..++.............-.... ..+..+.+ .+..| ...+.+
T Consensus 894 ~~~~l~lv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~--------------~~e~~~ 957 (1321)
T 4f4c_A 894 YGWQMALL--IIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQAL--------------AREDTF 957 (1321)
T ss_dssp HCHHHHHH--HHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHT--------------TTHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHH
T ss_conf 86899999--99988899999999999999999999999888988999999627988861--------------414889
Q ss_pred HHHCC----CCC-----CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHCCC--C------------------CCCCCCCCH
Q ss_conf 43048----677-----763145789999999-99999999999874277--7------------------775542221
Q 001507 591 LRQRS----LFP-----ESYWYWIGVGAMLGY-TLLFNALFTFFLSYLNP--L------------------GKQQAVVSK 640 (1065)
Q Consensus 591 l~~~~----~~~-----~~~~~~~~~g~ll~~-~~~~~~~~~~~l~~~~~--~------------------~~~~~~~~~ 640 (1065)
.+.+. ... ...+.....+....+ .+...+.+++....... . ..-......
T Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1037 (1321)
T 4f4c_A 958 YENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSY 1037 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999875788753765421478999999998778899999999
Q ss_pred -HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCEEEEEEE
Q ss_conf -2334676420385035766665411467567544357754576560589931167774041001246334552686311
Q 001507 641 -KELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719 (1065)
Q Consensus 641 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 719 (1065)
...... . .......+......+.... +..+.. +...-.+.++|+++..+. ..+.++|+|+
T Consensus 1038 ~~~~~~~---~---~a~~ri~~~l~~~~~~~~~--~~~~~~-~~~~g~I~f~nVsf~Y~~----------~~~~~VL~~i 1098 (1321)
T 4f4c_A 1038 FPEYAKA---T---FAGGIIFGMLRKISKIDSL--SLAGEK-KKLYGKVIFKNVRFAYPE----------RPEIEILKGL 1098 (1321)
T ss_dssp HHHHHHH---H---HHHHHHHHHHHCCCSSCTT--CCCSBC-CCCCCCEEEEEEEECCTT----------SCSSCSEEEE
T ss_pred HHHHHHH---H---HHHHHHHHHHHCCCCCCCC--CCCCCC-CCCCCEEEEEEEEEECCC----------CCCCCCCCCE
T ss_conf 9999999---9---9999899986076657776--677878-888881899987985799----------9988212451
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 4687488699999599972899999997899997168999997931890---0123538897379989999989999999
Q 001507 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLF 796 (1065)
Q Consensus 720 s~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~f 796 (1065)
|+.++|||++||+||||||||||+++|.|... +.+|+|.+||.++.. ..+|+.++||||++.++.+ |++||+.|
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~ 1175 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIY 1175 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSS
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECC-CHHHHHHC
T ss_conf 69988989999989999819999999956863--8997899999986549999998545998789973272-39999745
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 8660399998799999999999999089763-------367324898887799999999999999729981223189999
Q 001507 797 SAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsg 869 (1065)
.. .+.+.+ ++.++++++..++.+. -|+.+|..+ .+||||||||+|||||++++|+||+||||||+
T Consensus 1176 gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSa 1247 (1321)
T 4f4c_A 1176 GL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSA 1247 (1321)
T ss_dssp SS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred CC---CCCCCC----HHHHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 49---999999----99999999982984999717678999823889-15699999999999999717998999681115
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 999999999999999984896899992588588997439199993496999917999
Q 001507 870 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 870 lD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||+++...|++.|+++ .+++|+|+++|+++ ....+|+|+||+ +|+++.+|++.
T Consensus 1248 LD~~tE~~Iq~~l~~~-~~~~TvI~IAHRLs--Ti~~aD~I~Vld-~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1248 LDTESEKVVQEALDRA-REGRTCIVIAHRLN--TVMNADCIAVVS-NGTIIEKGTHT 1300 (1321)
T ss_dssp TTSHHHHHHHHHHTTT-SSSSEEEEECSSSS--TTTTCSEEEEES-SSSEEEEECHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCEEEEECCCHH--HHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 7899999999999997-39998999606899--999699999998-98999988889
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=620.90 Aligned_cols=794 Identities=17% Similarity=0.220 Sum_probs=377.8
Q ss_pred HHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEE
Q ss_conf 888415047753210133733788386699994699999689998994696999714589998893588888---98417
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~---~~~~i 82 (1065)
++|+++.++.+++.++|+|+|+.+++||.++|+||||||||||+++|+|.+.|+ +|+|.++|.++.+.. .++.+
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHE
T ss_conf 999899769999871012545897599889998999997999999980788999---73899999987757999998654
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 88754345688899899999985414988861243798899886189999125789865311688502689999999198
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL 162 (1065)
+||+|++++++. ||+|||.|+.. ....+.+.++++... .+.. .-.|
T Consensus 467 ~~v~Q~~~l~~~-ti~eNi~~g~~----~~~~~~~~~~~~~~~---------------------------~~~~--i~~l 512 (1284)
T 3g5u_A 467 GVVSQEPVLFAT-TIAENIRYGRE----DVTMDEIEKAVKEAN---------------------------AYDF--IMKL 512 (1284)
T ss_dssp EEECSSCCCCSS-CHHHHHHHHCS----SCCHHHHHHHHHHTT---------------------------CHHH--HHHS
T ss_pred EEECCCCCCCCC-CHHHHHHCCCC----CCCHHHHHHHHHHHC---------------------------CHHH--HHHC
T ss_conf 898688753776-69999745798----999999999999829---------------------------6999--9746
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 54344433686554476001346799999846980878737987879598999999999987607988999953796479
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~ 242 (1065)
+++.||.+|+++. +||||||||++||||++.+|+|++||||||+||+.++..+.+.++...+ ++|+|+ ++|....+
T Consensus 513 ~~g~~t~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~-itH~l~~i 588 (1284)
T 3g5u_A 513 PHQFDTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIV-IAHRLSTV 588 (1284)
T ss_dssp TTGGGCCCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEE-ECSCHHHH
T ss_pred CCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCHHHH
T ss_conf 5633450147878-6599999999999999529998999798777799999999999999739--998999-94077899
Q ss_pred HHHCCCEEEECCCCEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH-CC---CCCCCCCCCCCCHHHHHHH
Q ss_conf 9411408995289077885800089998717999999999467998732840000-00---2599999888995489999
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE-QY---WSNPYLPYRYISPGKFAEA 318 (1065)
Q Consensus 243 ~~lfD~I~iL~~G~iv~~G~~~~l~~~f~~~G~~~p~~~~~ad~l~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~ 318 (1065)
..+|+|++|++|++++.|++.++... .| ...+............ .. ...................
T Consensus 589 -~~~d~i~vl~~G~i~~~g~~~~l~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1284)
T 3g5u_A 589 -RNADVIAGFDGGVIVEQGNHDELMRE---KG-------IYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSS 657 (1284)
T ss_dssp -TTCSEEEECSSSCCCCEECHHHHHHT---TS-------HHHHHHHHTC-------------------------------
T ss_pred -HCCCEEEEEECCEEEEECCHHHHHHC---CC-------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -74998999989999997889999867---87-------79999997430022111333333222223443333333320
Q ss_pred H-HHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHH
Q ss_conf 9-8272211048861287667779955545698888579999999999999975062589999999999-------9999
Q 001507 319 F-HSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLI-------VALI 390 (1065)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~-------~~l~ 390 (1065)
. ............ ... ...................+... .........+....+..++ ...+
T Consensus 658 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1284)
T 3g5u_A 658 LIRRRSTRKSICGP-HDQ-DRKLSTKEALDEDVPPASFWRIL--------KLNSTEWPYFVVGIFCAIINGGLQPAFSVI 727 (1284)
T ss_dssp ----------------------------CCCCCSCCCTTHHH--------HHHHHTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCC-CCC-CCCCCHHHHHHCCCCCHHHHHHH--------HHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00345433344564-223-32110245553136625899999--------984515799999999999999999999999
Q ss_pred HHHH---HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9887---5245788875466300468999999999997799999976000222121018665526789988889864999
Q 001507 391 TMTV---FFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 467 (1065)
Q Consensus 391 ~g~~---f~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~ 467 (1065)
.+.+ +..... .. .......++.+.+..+.....+........ + .....+....+...+
T Consensus 728 ~~~~i~~~~~~~~-~~-----~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~-~------------~~~~~~~~~~lr~~l 788 (1284)
T 3g5u_A 728 FSKVVGVFTNGGP-PE-----TQRQNSNLFSLLFLILGIISFITFFLQGFT-F------------GKAGEILTKRLRYMV 788 (1284)
T ss_dssp HHHHHHHHHSSCS-TT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-CH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHH
T ss_conf 9999999855685-03-----367799999999999999999999999999-9------------999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC---CCHHHHHHHHHHH----------HHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98888876653324655---6344679999999----------9999999999-98776525786788888999999998
Q 001507 468 IESGFWVAVTYYVIGYD---PNVVRFSRQLLLY----------FFLHQMSIGL-FRVIGSLGRNMIVANTFGSFAMLVVM 533 (1065)
Q Consensus 468 l~~~~~~~i~y~l~g~~---~~~~~f~~~~l~~----------~~~~~~~~~~-~~~i~~~~~~~~~a~~~~~~~~~~~~ 533 (1065)
+..++-....||-..-. .-..++....-.. ++........ ..++..+...+.... +..++++
T Consensus 789 ~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~----l~~~p~~ 864 (1284)
T 3g5u_A 789 FKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLL----LAIVPII 864 (1284)
T ss_dssp HHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHH----HHHHHHH
T ss_pred HHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_conf 999983998887578998899999999999999999999999999999999999999999969999999----9999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHCHH------HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-------
Q ss_conf 7632111799953135785824699------999999998750699555468898865036774304867776-------
Q 001507 534 ALGGFIISRDSIPKWWIWGFWVSPL------MYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPES------- 600 (1065)
Q Consensus 534 ~~~g~~i~~~~ip~~~~~~~yi~p~------~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~------- 600 (1065)
.+.++ ....++... .+........+........ ..+...+.+.+.+......
T Consensus 865 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti----~a~~~e~~~~~~~~~~~~~~~~~~~~ 929 (1284)
T 3g5u_A 865 AIAGV-----------VEMKMLSGQALKDKKELEGSGKIATEAIENFRTV----VSLTREQKFETMYAQSLQIPYRNAMK 929 (1284)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTT----TTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999-----------9999999999999999999999999999889999----98465999999999999999999999
Q ss_pred CCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCC---CCCCC--CCHHHH--HHHHHHH----CCCC---HHHHHHHHHH
Q ss_conf 31457899--999999999999999987427777---75542--221233--4676420----3850---3576666541
Q 001507 601 YWYWIGVG--AMLGYTLLFNALFTFFLSYLNPLG---KQQAV--VSKKEL--QERDRRR----KGEN---VVIELREYLQ 664 (1065)
Q Consensus 601 ~~~~~~~g--~ll~~~~~~~~~~~~~l~~~~~~~---~~~~~--~~~~~~--~~~~~~~----~~~~---~~~~~~~~~~ 664 (1065)
...+.++. .......+..++..+...+....+ ..... ...... ....... .... ......+...
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 1009 (1284)
T 3g5u_A 930 KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999999098069999999999999999999999999999999999999999983
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 14675675443577545765605899311677740410012463345526863114687488699999599972899999
Q 001507 665 RSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 744 (1065)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~ 744 (1065)
..+... ..+..+.........+.++|+++..+. ....++|+|+|+.+++||++||+||||||||||++
T Consensus 1010 ~~~~~~--~~~~~~~~~~~~~g~i~~~~v~~~y~~----------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~ 1077 (1284)
T 3g5u_A 1010 KTPEID--SYSTQGLKPNMLEGNVQFSGVVFNYPT----------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQ 1077 (1284)
T ss_dssp SCCSSS--SCCSSCCCTTTTSCCEEEEEEEBCCSC----------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHH
T ss_pred CCCCCC--CCCCCCCCCCCCCCCEEEEEEEEECCC----------CCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf 887666--655566545677785799998997799----------99870020305997699889998899997899999
Q ss_pred HHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 997899997168999997931890---01235388973799899999899999998660399998799999999999999
Q 001507 745 VLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 821 (1065)
Q Consensus 745 ~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1065)
+|+|..+ +.+|+|.+||.++.. ...++.++||+|++.++. .|++||+.+....+ ....+ .+++.++.
T Consensus 1078 ~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~----~i~~~~~~ 1147 (1284)
T 3g5u_A 1078 LLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYE----EIVRAAKE 1147 (1284)
T ss_dssp HHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHH----HHHHHHHH
T ss_pred HHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCC-CCHHHHHHCCCCCC---CCCHH----HHHHHHHH
T ss_conf 9946867--899779899998000789999702689877874066-66999974668778---99999----99999998
Q ss_pred CCCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 08976-------33673248988877999999999999997299812231899999999999999999999848968999
Q 001507 822 VELTS-------LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 894 (1065)
Q Consensus 822 ~~l~~-------~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~ 894 (1065)
.++.+ -.++.+|.. ...||||||||++|||+|+++|+||+|||||++||+.+...+++.+++. .+|+|||+
T Consensus 1148 ~~~~~~i~~l~~gldt~vge~-G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~ 1225 (1284)
T 3g5u_A 1148 ANIHQFIDSLPDKYNTRVGDK-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIV 1225 (1284)
T ss_dssp HTCHHHHSSTTTGGGCBCSTT-SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEE
T ss_pred HCCHHHHHHCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 395999972704245611788-8933899999999999997499999986875557999999999999986-79998999
Q ss_pred EECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 92588588997439199993496999917999
Q 001507 895 TIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 895 ~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
++|+++. + ..+|++++|. +|+++..|++.
T Consensus 1226 isH~l~~-i-~~~dri~vl~-~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1226 IAHRLST-I-QNADLIVVIQ-NGKVKEHGTHQ 1254 (1284)
T ss_dssp ECSCTTG-G-GSCSEEEEEE-TBEEEEEECHH
T ss_pred EECCHHH-H-HCCCEEEEEE-CCEEEEECCHH
T ss_conf 9558799-9-8099899998-99899977899
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=479.41 Aligned_cols=448 Identities=21% Similarity=0.226 Sum_probs=313.9
Q ss_pred HHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE---------EECCCCCCCC-
Q ss_conf 884150477532101337337883866999946999996899989946969997145899---------9889358888-
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI---------TYNGHGFKEF- 76 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I---------~inG~~~~~~- 76 (1065)
+++++.++.+ ..+|+++| .+++|++++|+||||||||||+++|+|.+.|+ +|++ .++|.++...
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~ 168 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYF 168 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHH
T ss_pred CCEEEEECCC--CEEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHH
T ss_conf 7859998997--84048989-88989999999999972999999985799878---785466630133136877613432
Q ss_pred ----CCCCEEEEECCCCCCCC---CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf ----89841788754345688---89989999998541498886124379889988618999912578986531168850
Q 001507 77 ----VPPRTSAYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 149 (1065)
Q Consensus 77 ----~~~~~i~yv~Q~d~l~~---~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~ 149 (1065)
..+..+++++|.....+ ..||+|++.... .
T Consensus 169 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~------~------------------------------------- 205 (607)
T 3bk7_A 169 ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD------E------------------------------------- 205 (607)
T ss_dssp HHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC------C-------------------------------------
T ss_pred HHHHHHHCCEEEEECHHHHCHHHCCCCHHHHHHHHH------H-------------------------------------
T ss_conf 345565344688632043130220050999963167------9-------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 26899999991985434443368655447600134679999984698087873798787959899999999998760798
Q 001507 150 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 229 (1065)
Q Consensus 150 ~~~ve~il~~lgL~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~ 229 (1065)
...++++++.+||++..+..++ .||||||||++||+|++.+|++++|||||++||..++..+++.|+++.. . +
T Consensus 206 ~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~-g 278 (607)
T 3bk7_A 206 VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-E-G 278 (607)
T ss_dssp SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-T
T ss_pred HHHHHHHHHHCCCCCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-C
T ss_conf 9999999997599704379805-----6999999999999998459999999797435899999999999999986-6-9
Q ss_pred EEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCC
Q ss_conf 89999537964799411408995289077885800089998717999999999467998732840000002599999888
Q 001507 230 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRY 309 (1065)
Q Consensus 230 t~Ii~i~q~~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~~f~~~G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~ 309 (1065)
.+|+.++|....+..++|+|++|.++... +|... .+.
T Consensus 279 ~tvIivsHdl~~~~~~adri~vl~~~~~~-~g~~~----------------------------------------~~~-- 315 (607)
T 3bk7_A 279 KAVLVVEHDLAVLDYLSDVIHVVYGEPGV-YGIFS----------------------------------------KPK-- 315 (607)
T ss_dssp CEEEEECSCHHHHHHHCSEEEEEESCTTT-EEEEC----------------------------------------CCE--
T ss_pred CEEEEEECCHHHHHHHCCEEEEECCCCCC-CCEEC----------------------------------------CCH--
T ss_conf 98999964858988658999997798644-52122----------------------------------------413--
Q ss_pred CCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99548999998272211048861287667779955545698888579999999999999975062589999999999999
Q 001507 310 ISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVAL 389 (1065)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l 389 (1065)
...... ..+
T Consensus 316 --------------------------------------------~~~~~i-----~~~---------------------- 324 (607)
T 3bk7_A 316 --------------------------------------------GTRNGI-----NEF---------------------- 324 (607)
T ss_dssp --------------------------------------------EHHHHH-----HHH----------------------
T ss_pred --------------------------------------------HHHHHH-----HHH----------------------
T ss_conf --------------------------------------------279999-----999----------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99887524578887546630046899999999999779999997600022212101866552678998888986499998
Q 001507 390 ITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIE 469 (1065)
Q Consensus 390 ~~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~l~ 469 (1065)
.
T Consensus 325 ~------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 325 L------------------------------------------------------------------------------- 325 (607)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
T ss_conf 7-------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 88887665332465563446799999999999999999987765257867888889999999987632111799953135
Q 001507 470 SGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWW 549 (1065)
Q Consensus 470 ~~~~~~i~y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~~~~g~~i~~~~ip~~~ 549 (1065)
.++. ..
T Consensus 326 ------------------------------------------------------------------~~~~-~~------- 331 (607)
T 3bk7_A 326 ------------------------------------------------------------------QGYL-KD------- 331 (607)
T ss_dssp ------------------------------------------------------------------HTEE-TT-------
T ss_pred ------------------------------------------------------------------HHCC-HH-------
T ss_conf ------------------------------------------------------------------5101-34-------
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78582469999999999875069955546889886503677430486777631457899999999999999999987427
Q 001507 550 IWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLN 629 (1065)
Q Consensus 550 ~~~~yi~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~~~~~~l~~~~ 629 (1065)
.+.. +.....
T Consensus 332 --------------------------------~~~~----------~~~~~~---------------------------- 341 (607)
T 3bk7_A 332 --------------------------------ENVR----------FRPYEI---------------------------- 341 (607)
T ss_dssp --------------------------------TTEE----------CCSSCC----------------------------
T ss_pred --------------------------------HHHH----------CCCCCC----------------------------
T ss_conf --------------------------------5543----------012123----------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCC
Q ss_conf 77775542221233467642038503576666541146756754435775457656058993116777404100124633
Q 001507 630 PLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 709 (1065)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1065)
. .. .. ... . . ......+.+++++...
T Consensus 342 ~-------~~-------------------~~-----~~~---~---~-----~~~~~~l~~~~l~~~~------------ 367 (607)
T 3bk7_A 342 R-------FT-------------------KL-----SER---V---D-----VERETLVEYPRLVKDY------------ 367 (607)
T ss_dssp C-------CC-------------------CS-----TTS---C---C-----CCCCEEEEECCEEEEC------------
T ss_pred C-------CC-------------------CC-----CCC---C---C-----CCCCEEEEEECEEEEE------------
T ss_conf 4-------56-------------------57-----775---4---4-----4675289991309874------------
Q ss_pred CCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 45526863114687488699999599972899999997899997168999997931890012353889737998999998
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 710 ~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lt 789 (1065)
++ ..|+++++.+++||++||+||||||||||+++|+|..+ +.+|+|.++ ..++|++|+....+.+|
T Consensus 368 -~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~----------~~i~~v~Q~~~~~~~~t 433 (607)
T 3bk7_A 368 -GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEWD----------LTVAYKPQYIKAEYEGT 433 (607)
T ss_dssp -SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCCC----------CCEEEECSSCCCCCSSB
T ss_pred -CC-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEEE----------EEEEEEECCCCCCCCCC
T ss_conf -43-48993515327998999999999899999999966988--886289990----------27999805766778984
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 99999998660399998799999999999999089763367324898887799999999999999729981223189999
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsg 869 (1065)
|.|++....... ....+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 434 v~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~ 501 (607)
T 3bk7_A 434 VYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501 (607)
T ss_dssp HHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred HHHHHHHHHCCC-------CCHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 999997531258-------778999999998769933754992-----23799999999999999748998999687447
Q ss_pred CCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCC
Q ss_conf 99999999999999998-48968999925885889974391999934-9699991799986
Q 001507 870 LDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGSK 928 (1065)
Q Consensus 870 lD~~~~~~i~~~l~~~~-~~~~tvi~~~H~~~~~~~~~~d~~~~l~~-gg~~~~~g~~~~~ 928 (1065)
||+.++..+.++|++++ +.|.|||+++|++. .+...+|++++|.. .|++...|++.+.
T Consensus 502 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHHH
T ss_conf 89999999999999999747989999909899-9998699999995983069742898999
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=470.18 Aligned_cols=447 Identities=21% Similarity=0.241 Sum_probs=310.5
Q ss_pred HHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE---------EECCCCCCCC-
Q ss_conf 884150477532101337337883866999946999996899989946969997145899---------9889358888-
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI---------TYNGHGFKEF- 76 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I---------~inG~~~~~~- 76 (1065)
+++++.++.+ ..+|+++| .+++||+++|+||||||||||+++|+|.+.|+ +|++ .++|.++...
T Consensus 25 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 25 EDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp CCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred CCCEEEECCC--CCCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 5907997996--50026768-67999999999999997999999996799888---886675314567761884077778
Q ss_pred ----CCCCEEEEECCCCCCCCC---CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf ----898417887543456888---9989999998541498886124379889988618999912578986531168850
Q 001507 77 ----VPPRTSAYVSQQDWQVAE---MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 149 (1065)
Q Consensus 77 ----~~~~~i~yv~Q~d~l~~~---lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~ 149 (1065)
..+..+++++|.....+. .|+.|++.....
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~------------------------------------------- 135 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE------------------------------------------- 135 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------
T ss_conf 7888874446653223432101211219999743139-------------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 26899999991985434443368655447600134679999984698087873798787959899999999998760798
Q 001507 150 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 229 (1065)
Q Consensus 150 ~~~ve~il~~lgL~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~ 229 (1065)
...++++++.+||.+..+..+ ..||||||||++||+|++.+|++++|||||++||..++..+++.|+++.. . +
T Consensus 136 ~~~~~~~l~~lgl~~~~~~~~-----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~-g 208 (538)
T 1yqt_A 136 TGKLEEVVKALELENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-E-G 208 (538)
T ss_dssp SSCHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-T
T ss_pred HHHHHHHHHHCCCCHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-C
T ss_conf 999999998769973660983-----54899999999999998469999999897345798899999999999996-5-9
Q ss_pred EEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCC
Q ss_conf 89999537964799411408995289077885800089998717999999999467998732840000002599999888
Q 001507 230 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRY 309 (1065)
Q Consensus 230 t~Ii~i~q~~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~~f~~~G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~ 309 (1065)
.+|+.++|...++..++|+|++|.+|...+ |... .+.
T Consensus 209 ~tvi~vsHd~~~~~~~~dri~vl~~~~~~~-~~~~----------------------------------------~~~-- 245 (538)
T 1yqt_A 209 KSVLVVEHDLAVLDYLSDIIHVVYGEPGVY-GIFS----------------------------------------QPK-- 245 (538)
T ss_dssp CEEEEECSCHHHHHHHCSEEEEEEEETTTE-EEEC----------------------------------------CCE--
T ss_pred CEEEEEECCHHHHHHHCCEEEEECCCCCCC-CCCC----------------------------------------CHH--
T ss_conf 879999478899997688999986863244-0225----------------------------------------535--
Q ss_pred CCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99548999998272211048861287667779955545698888579999999999999975062589999999999999
Q 001507 310 ISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVAL 389 (1065)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l 389 (1065)
...... ..+
T Consensus 246 --------------------------------------------~~~~~~-----~~~---------------------- 254 (538)
T 1yqt_A 246 --------------------------------------------GTRNGI-----NEF---------------------- 254 (538)
T ss_dssp --------------------------------------------EHHHHH-----HHH----------------------
T ss_pred --------------------------------------------HHHHHH-----HHH----------------------
T ss_conf --------------------------------------------589999-----987----------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99887524578887546630046899999999999779999997600022212101866552678998888986499998
Q 001507 390 ITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIE 469 (1065)
Q Consensus 390 ~~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~l~ 469 (1065)
.
T Consensus 255 ~------------------------------------------------------------------------------- 255 (538)
T 1yqt_A 255 L------------------------------------------------------------------------------- 255 (538)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
T ss_conf 6-------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 88887665332465563446799999999999999999987765257867888889999999987632111799953135
Q 001507 470 SGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWW 549 (1065)
Q Consensus 470 ~~~~~~i~y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~~~~g~~i~~~~ip~~~ 549 (1065)
.+.. ..
T Consensus 256 ------------------------------------------------------------------~~~~-~~------- 261 (538)
T 1yqt_A 256 ------------------------------------------------------------------RGYL-KD------- 261 (538)
T ss_dssp ------------------------------------------------------------------HTEE-TT-------
T ss_pred ------------------------------------------------------------------HHCC-CH-------
T ss_conf ------------------------------------------------------------------4023-00-------
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78582469999999999875069955546889886503677430486777631457899999999999999999987427
Q 001507 550 IWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLN 629 (1065)
Q Consensus 550 ~~~~yi~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~~~~~~l~~~~ 629 (1065)
. .. .......
T Consensus 262 --------------------------------~--~~--------~~~~~~~---------------------------- 271 (538)
T 1yqt_A 262 --------------------------------E--NV--------RFRPYEI---------------------------- 271 (538)
T ss_dssp --------------------------------T--TE--------ECSSSCC----------------------------
T ss_pred --------------------------------H--HH--------CCCCCCC----------------------------
T ss_conf --------------------------------2--32--------0344455----------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCC
Q ss_conf 77775542221233467642038503576666541146756754435775457656058993116777404100124633
Q 001507 630 PLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 709 (1065)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1065)
. .. . .. . . .. +.....+.+++++...
T Consensus 272 ~-------~~-------------------~------~~-~--~--~~-----~~~~~~l~~~~l~~~~------------ 297 (538)
T 1yqt_A 272 K-------FT-------------------K------TG-E--R--VE-----IERETLVTYPRLVKDY------------ 297 (538)
T ss_dssp C-------CC-------------------C------SS-G--G--GS-----SCCCEEEEECCEEEEE------------
T ss_pred C-------CC-------------------C------CC-C--C--CC-----CCCCEEEEEEEEEEEE------------
T ss_conf 5-------45-------------------5------77-6--5--56-----6787189993079998------------
Q ss_pred CCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 45526863114687488699999599972899999997899997168999997931890012353889737998999998
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 710 ~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+. ..|+++++.+++||++||+||||||||||+++|+|..+ +.+|+|.++ ..++|++|+....+.+|
T Consensus 298 -~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~----------~~i~~v~Q~~~~~~~~t 363 (538)
T 1yqt_A 298 -GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEWD----------LTVAYKPQYIKADYEGT 363 (538)
T ss_dssp -TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCCC----------CCEEEECSSCCCCCSSB
T ss_pred -CC-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEEC----------CEEEEEECCCCCCCCCC
T ss_conf -99-89990744128998999988999999999999967998--997189987----------46999826776788885
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 99999998660399998799999999999999089763367324898887799999999999999729981223189999
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsg 869 (1065)
|.|++........ ...+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 364 v~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 364 VYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAY 431 (538)
T ss_dssp HHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred HHHHHHHHHCCCC-------CHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999986403688-------78999999999749915653994-----44899999999999999728998999398010
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999999999999999984-8968999925885889974391999934-969999179998
Q 001507 870 LDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 927 (1065)
Q Consensus 870 lD~~~~~~i~~~l~~~~~-~~~tvi~~~H~~~~~~~~~~d~~~~l~~-gg~~~~~g~~~~ 927 (1065)
||+.++..+.+.|+++++ .|.|||+++|++. ++...+|++++|.. .|+++..|++.+
T Consensus 432 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 89999999999999999867989999939899-999968999999088315740489899
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=462.75 Aligned_cols=428 Identities=20% Similarity=0.274 Sum_probs=298.8
Q ss_pred CEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCC
Q ss_conf 210133733788386699994699999689998994696999714589998893588888984178875434-5688899
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMT 96 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~~~~i~yv~Q~d-~l~~~lT 96 (1065)
.+.+|+++|+.+++|++++|+||||||||||+++|+| |.| +|.+... ...++|++|+. .+++.+|
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSB
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCC
T ss_conf 9876741269981897899999999879999999948---------986--7976635---4169997356432455780
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCC
Q ss_conf 8999999854149888612437988998861899991257898653116885026899999991985-434443368655
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEML 175 (1065)
Q Consensus 97 VrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL~-~~~dT~VG~~~~ 175 (1065)
|.|++.+ ...+ . ...++.+++.+||. +..+..++
T Consensus 513 v~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~---- 547 (986)
T 2iw3_A 513 VLDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS---- 547 (986)
T ss_dssp HHHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG----
T ss_pred HHHHHHH--HHCC--H-------------------------------------HHHHHHHHHHCCCCHHHHCCCCC----
T ss_conf 9999998--6127--9-------------------------------------99999999986998446439802----
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEECCC
Q ss_conf 44760013467999998469808787379878795989999999999876079889999537964799411408995289
Q 001507 176 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 255 (1065)
Q Consensus 176 ~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~lfD~I~iL~~G 255 (1065)
.||||||||++||++++.+|++++|||||+|||..++.++++.|+. .+++ ++.++|...++...+|++++|.+|
T Consensus 548 -~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~t-vIivSHdl~~l~~~adrii~L~~G 621 (986)
T 2iw3_A 548 -ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGIT-SITISHDSVFLDNVCEYIINYEGL 621 (986)
T ss_dssp -GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSE-EEEECSCHHHHHHHCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCE-EEEEECCHHHHHHHCCEEEEEECC
T ss_conf -0799999999999999649999999797667999999999999986----7998-999979889999868999999799
Q ss_pred CEE-EECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCC
Q ss_conf 077-8858000899987179999999994679987328400000025999998889954899999827221104886128
Q 001507 256 QIV-YQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 334 (1065)
Q Consensus 256 ~iv-~~G~~~~l~~~f~~~G~~~p~~~~~ad~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1065)
+++ +.|+..++.... . ....
T Consensus 622 ~iv~~~G~~~e~~~~~----------------------~-~~~~------------------------------------ 642 (986)
T 2iw3_A 622 KLRKYKGNFTEFVKKC----------------------P-AAKA------------------------------------ 642 (986)
T ss_dssp EEEEEESCHHHHHHHC----------------------G-GGGG------------------------------------
T ss_pred EEECCCCCHHHHHHHH----------------------H-HHHH------------------------------------
T ss_conf 4426779999998614----------------------8-8999------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 76677799555456988885799999999999999750625899999999999999988752457888754663004689
Q 001507 335 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 414 (1065)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~ 414 (1065)
++.... . .
T Consensus 643 ------------------------------------------------------------~~~l~~--~---~------- 650 (986)
T 2iw3_A 643 ------------------------------------------------------------YEELSN--T---D------- 650 (986)
T ss_dssp ------------------------------------------------------------SSSTTT--C---C-------
T ss_pred ------------------------------------------------------------HHHHHH--H---H-------
T ss_conf ------------------------------------------------------------986445--4---4-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99999999997799999976000222121018665526789988889864999988888766533246556344679999
Q 001507 415 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 494 (1065)
Q Consensus 415 ~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~l~~~~~~~i~y~l~g~~~~~~~f~~~~ 494 (1065)
T Consensus 651 -------------------------------------------------------------------------------- 650 (986)
T 2iw3_A 651 -------------------------------------------------------------------------------- 650 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999877652578678888899999999876321117999531357858246999999999987506995
Q 001507 495 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 574 (1065)
Q Consensus 495 l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~~~~g~~i~~~~ip~~~~~~~yi~p~~y~~~~~~~~~~~~~~ 574 (1065)
T Consensus 651 -------------------------------------------------------------------------------- 650 (986)
T 2iw3_A 651 -------------------------------------------------------------------------------- 650 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 55468898865036774304867776314578999999999999999999874277777554222123346764203850
Q 001507 575 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 654 (1065)
Q Consensus 575 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (1065)
.. ..+ +..
T Consensus 651 ---------~~--------~~~-p~~------------------------------------------------------ 658 (986)
T 2iw3_A 651 ---------LE--------FKF-PEP------------------------------------------------------ 658 (986)
T ss_dssp ---------CC--------CCC-CCC------------------------------------------------------
T ss_pred ---------HH--------CCC-CCC------------------------------------------------------
T ss_conf ---------32--------035-655------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECC
Q ss_conf 35766665411467567544357754576560589931167774041001246334552686311468748869999959
Q 001507 655 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 734 (1065)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~~~~g~~~ai~G~ 734 (1065)
... ..... ....-+..+|+++... ...+.+|+++|+.+++|+++||+||
T Consensus 659 ------------~~~--~~~~~------~~~~mL~v~nLs~~Y~-----------g~~~~iL~dVSl~I~~GeivaIiGp 707 (986)
T 2iw3_A 659 ------------GYL--EGVKT------KQKAIVKVTNMEFQYP-----------GTSKPQITDINFQCSLSSRIAVIGP 707 (986)
T ss_dssp ------------CCC--TTCCS------TTSEEEEEEEEEECCT-----------TCSSCSEEEEEEEEETTCEEEECSC
T ss_pred ------------CCC--CCCCC------CCCCEEEEEEEEEEEC-----------CCCCEEEECCEEEECCCCEEEEECC
T ss_conf ------------543--34566------7870699984699818-----------9874134322799828978999899
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHCC---------
Q ss_conf 99728999999978999971689999979318900123538897379989----99998999999986603---------
Q 001507 735 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH----SPGLTVLESLLFSAWLR--------- 801 (1065)
Q Consensus 735 sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~----~~~ltv~e~l~f~~~~~--------- 801 (1065)
||||||||+++|+|... +.+|+|.++|.. .++|++|+... ....|+++++.+.-...
T Consensus 708 NGSGKSTLLklLaGll~--P~sG~I~~~~~~--------~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~ 777 (986)
T 2iw3_A 708 NGAGKSTLINVLTGELL--PTSGEVYTHENC--------RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRA 777 (986)
T ss_dssp CCHHHHHHHHHHTTSSC--CSEEEEEECTTC--------CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTT
T ss_pred CCCCHHHHHHHHHCCCC--CCCEEEEECCCC--------CEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99879999999957988--886089986864--------25763130243321001147999988775045025555433
Q ss_pred ---CC----------------------------------------------------CC--------CC-----------
Q ss_conf ---99----------------------------------------------------99--------87-----------
Q 001507 802 ---LP----------------------------------------------------SE--------IE----------- 807 (1065)
Q Consensus 802 ---~~----------------------------------------------------~~--------~~----------- 807 (1065)
.. .. ..
T Consensus 778 ~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~ 857 (986)
T 2iw3_A 778 NRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKM 857 (986)
T ss_dssp SCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHH
T ss_pred HHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 21034355544200011232012344445554312220021000255432000001234323443210167776667665
Q ss_pred ---------------HHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf ---------------9999999999999908976-3-3673248988877999999999999997299812231899999
Q 001507 808 ---------------LETQRAFVEEVMELVELTS-L-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 808 ---------------~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsgl 870 (1065)
.....+.++++++.+++.. . .+..+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 858 v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gL 932 (986)
T 2iw3_A 858 VAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932 (986)
T ss_dssp HHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 544324555430223234799999999976998054448980-----423999999999999998399999997986577
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 999999999999999848968999925885889974391999934969999179
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 924 (1065)
|+.+...+.+.|+++ +.|||+++|++. .+...+|++++|. +|+++..|+
T Consensus 933 D~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~-~G~Iv~~G~ 981 (986)
T 2iw3_A 933 DRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVK-DGRMTPSGH 981 (986)
T ss_dssp CHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCB-TTBCCC---
T ss_pred CHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 999999999999974---997999979899-9998589999998-999998687
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=462.34 Aligned_cols=216 Identities=22% Similarity=0.228 Sum_probs=149.5
Q ss_pred CCCEECCCCCEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCC----CEEEEEEECC
Q ss_conf 5321013373378838669999469999968999---------------------89946969997----1458999889
Q 001507 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---------------------LALAGRLGHHL----QVSGKITYNG 70 (1065)
Q Consensus 16 ~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL---------------------~~L~G~l~~~~----~~~G~I~inG 70 (1065)
.....+|+|+|+.+++|++++|+||||||||||+ +.+.|...|+. ...|.|.++|
T Consensus 28 ~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 28 GARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp EECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred CCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECC
T ss_conf 87764023438998799899998999999888715101232111000110024455530345677563213564157447
Q ss_pred CCCCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 35888889841788754345-------------------68889989999998541498886124379889988618999
Q 001507 71 HGFKEFVPPRTSAYVSQQDW-------------------QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 131 (1065)
Q Consensus 71 ~~~~~~~~~~~i~yv~Q~d~-------------------l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (1065)
.+.... .++.++|++|... .++.+||+||+.+.......... . +.... .
T Consensus 108 ~~~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~-~---~~~~~------~- 175 (670)
T 3ux8_A 108 KTTSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKE-A---QIARL------I- 175 (670)
T ss_dssp CC------CCBHHHHTTCC-------------------------CC----------------------------------
T ss_pred CHHHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHH-H---HHHHH------H-
T ss_conf 201025-5000046511256677777531111234443334578599999975203643145-6---77888------8-
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE--EEEEECCCCCC
Q ss_conf 9125789865311688502689999999198543-44433686554476001346799999846980--87873798787
Q 001507 132 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGL 208 (1065)
Q Consensus 132 ~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL~~~-~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~--IllLDEPTSgL 208 (1065)
..+... .-.+++.+||.+. .+..+ ..||||||||++|||||+.+|+ +++|||||+||
T Consensus 176 --------------~~~~~~-~~~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgL 235 (670)
T 3ux8_A 176 --------------LREIRD-RLGFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGL 235 (670)
T ss_dssp -----------------CHH-HHHHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTC
T ss_pred --------------HHHHHH-HHHHHHHCCCCHHHHCCCC-----CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf --------------999999-9989997598434414970-----01899999999999999628998789997985689
Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEE------CCCCEEEECCCCHH
Q ss_conf 95989999999999876079889999537964799411408995------28907788580008
Q 001507 209 DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSV 266 (1065)
Q Consensus 209 Ds~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~lfD~I~iL------~~G~iv~~G~~~~l 266 (1065)
|+.++.++++.++++.. .+. +|+.++|....+ ..+|++++| ++|++++.|+..++
T Consensus 236 D~~~~~~l~~~l~~l~~-~g~-tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 236 HQRDNDRLIATLKSMRD-LGN-TLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp CGGGHHHHHHHHHHHHH-TTC-EEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHH-CCC-EEEEEECCHHHH-HHCCEEEEECCCCCCCCCEEEEECCHHHH
T ss_conf 99999999999999997-499-899995787999-62998999446665669889974089998
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=455.26 Aligned_cols=203 Identities=23% Similarity=0.242 Sum_probs=161.4
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 68631146874886999995999728999999978999971689999979318900123538897379989999989999
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 793 (1065)
Q Consensus 714 ~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~ 793 (1065)
..|..+++.+++||++||+||||||||||+++|+|..+ +.+|+|.+++. .++|++|+.......||+|+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCE---------EEEEECHHCCCCCCCCHHHH
T ss_conf 89982664688998999999999989999999957888--99818999984---------56761400034547779999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHH
Q ss_conf 99986603999987999999999999990897633673248988877999999999999997299812231899999999
Q 001507 794 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873 (1065)
Q Consensus 794 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~ 873 (1065)
+.+....... . ....++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 351 l~~~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 351 LENASKDALS-T-----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHCSSTTC-T-----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHCCC-H-----HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 9875531121-1-----6999999998759977862893-----227999999999999997089989996986579999
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 99999999999984-8968999925885889974391999934-969999179998615799999864
Q 001507 874 AAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGSKSCELIKYFEAV 939 (1065)
Q Consensus 874 ~~~~i~~~l~~~~~-~~~tvi~~~H~~~~~~~~~~d~~~~l~~-gg~~~~~g~~~~~~~~~~~~~~~~ 939 (1065)
++..+.+.|+++++ .|.|||+++|++. ++...+|++++|.. .+.....+++.........|+..+
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999999738989999958899-999968999999698510116798477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=446.47 Aligned_cols=202 Identities=18% Similarity=0.195 Sum_probs=158.1
Q ss_pred EEEEEEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 6863114687488-----69999959997289999999789999716899999793189001235388973799899999
Q 001507 714 QLLVNVTGAFRPG-----VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 714 ~~l~~vs~~~~~g-----~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~l 788 (1065)
.+++++++.+.+| |++||+||||||||||+++|+|..+ +.+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 4468658997068514651899988889869999999965787--878858------66----77379860544445786
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 89999999866039999879999999999999908976336732489888779999999999999972998122318999
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEpts 868 (1065)
||+|++... .+.. ... ...++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~~-~~~----~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRGQ-FLN----PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSST-TTS----HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHCC-CCC----HHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--5303-246----899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 999999999999999998-48968999925885889974391999934-9699991799986157999998648
Q 001507 869 GLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGSKSCELIKYFEAVE 940 (1065)
Q Consensus 869 glD~~~~~~i~~~l~~~~-~~~~tvi~~~H~~~~~~~~~~d~~~~l~~-gg~~~~~g~~~~~~~~~~~~~~~~~ 940 (1065)
|||+.++..+.++|++++ +.|.|||+++|++. ++...+|++++|.. .|+++..|+|.+.......+...+.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~ 569 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLN 569 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 899999999999999999757998999968899-9998689999995898737742986998630468997548
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=353.87 Aligned_cols=214 Identities=26% Similarity=0.379 Sum_probs=176.3
Q ss_pred EEEEEECEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 05899311677740410012463345526863114687488699999599972899999997899997168999997931
Q 001507 686 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 765 (1065)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~ 765 (1065)
..+.++|+++..+. ..+.++|+|+|+.+++|+++||+||||||||||+++|.|... +.+|+|.+||.+
T Consensus 414 g~I~~~nvsF~Y~~----------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPS----------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSS----------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CCEEEEEEEEECCC----------CCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCCC
T ss_conf 76799985540799----------998743333188622882789980589857788887545651--644861579965
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCC
Q ss_conf 890---012353889737998999998999999986603999987999999999999990897-------6336732489
Q 001507 766 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------SLSGALIGLP 835 (1065)
Q Consensus 766 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~ 835 (1065)
++. ..+++.++||+|++.++.+ |++||+.|+. ...+ ++.+.++++..++. +--++.+|..
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~-----~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGK-----EGIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTC-----TTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred CHHCCHHHHHHCCCCCCCCCEEECC-CHHHHHHHHC-----CCCH----HHHHHHHHHHCCCHHHHHCCCCCCCCEECCC
T ss_conf 0112599985046665875332078-6167886415-----5220----9999999987565468870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 88877999999999999997299812231899999999999999999999848968999925885889974391999934
Q 001507 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 915 (1065)
Q Consensus 836 ~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~ 915 (1065)
+ ..||||||||++||||++++|+|++||||||+||+.+...+.+.++++. +|+|+|+++|+++ ....+|++++|.
T Consensus 552 G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~- 626 (1321)
T 4f4c_A 552 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK- 626 (1321)
T ss_dssp S-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE-
T ss_pred C-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE-
T ss_conf 8-8777778799999998725999899845544688789999999999984-7988999736387--898689899963-
Q ss_pred CCEEEEECCCC
Q ss_conf 96999917999
Q 001507 916 GGELIYAGPLG 926 (1065)
Q Consensus 916 gg~~~~~g~~~ 926 (1065)
+|+++..|+..
T Consensus 627 ~G~ive~Gth~ 637 (1321)
T 4f4c_A 627 NGQVVEVGDHR 637 (1321)
T ss_dssp TTEEEEEECHH
T ss_pred CCEEECCCCHH
T ss_conf 99651368999
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=352.87 Aligned_cols=198 Identities=26% Similarity=0.407 Sum_probs=144.8
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCCC-CC---EEE------EEEEECCCCCCCCC----
Q ss_conf 686311468748869999959997289999---------99978999-97---168------99999793189001----
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---------DVLAGRKT-GG---IIE------GDIYISGYPKRQET---- 770 (1065)
Q Consensus 714 ~~l~~vs~~~~~g~~~ai~G~sGaGKsTll---------~~l~g~~~-~~---~~~------G~i~i~g~~~~~~~---- 770 (1065)
..|+|+|+.+++|++++|+|+||||||||+ +.+.+... .+ ... +.+.+++.+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred ----------------------------------------CCCEEEEECCCCCCCC------------------------
Q ss_conf ----------------------------------------2353889737998999------------------------
Q 001507 771 ----------------------------------------FARISGYCEQNDIHSP------------------------ 786 (1065)
Q Consensus 771 ----------------------------------------~~~~~~~v~q~~~~~~------------------------ 786 (1065)
..+..||+.++..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------998999999986603999987999999999999990897633673248988877999999999999997299
Q 001507 787 --------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 858 (1065)
Q Consensus 787 --------~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p 858 (1065)
.+||.|++.|.... ....++.++++.+||.... .+.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------0589999999981886333---1687-1579999999999999996287
Q ss_pred ---CCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE-----CCCEEEEECCCC
Q ss_conf ---81223189999999999999999999984896899992588588997439199993-----496999917999
Q 001507 859 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 926 (1065)
Q Consensus 859 ---~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~-----~gg~~~~~g~~~ 926 (1065)
++++|||||+|||+.+...+++.|++++++|.|||+++|+++ .+..+|++++|. ++|++++.|+++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 889789997988899999999999999999966998999937999--99729999996687777897899976999
Done!