BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001509
(1065 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 80/148 (54%), Gaps = 18/148 (12%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
+ ++YNL +Y+ +GDY++A YY +++ + E +Y LG K GD+ A+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEY 57
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424
++K LE+ P + E LG+ Y + G ++A E +KA ++DPR A+A
Sbjct: 58 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY---------- 107
Query: 425 IEVLNNIGVIHFEKGEFESAHQSFKDAL 452
N+G ++++G+++ A + ++ AL
Sbjct: 108 -----NLGNAYYKQGDYDEAIEYYQKAL 130
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
+ E +Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G +
Sbjct: 64 LDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 394 KAQELLRKAAKIDPR 408
+A E +KA ++DPR
Sbjct: 121 EAIEYYQKALELDPR 135
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 155
LG KQ + +E A +YY KA +D W G +G+ ++A ++ L
Sbjct: 7 LGNAYYKQGDYDE----AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215
E D + A + +G Y +++E+Y++AL++ P A +G YK G +
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDE 121
Query: 216 ARQAFQRALQLDP 228
A + +Q+AL+LDP
Sbjct: 122 AIEYYQKALELDP 134
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
W G +G+ ++A ++ LE D + A + +G Y +++E+Y++AL
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
++ P A +G YK G +A + +Q+AL+LDP + EA L + +
Sbjct: 63 ELDPRSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--- 118
Query: 250 IRKGMEKMQRAFEIYP 265
+ +E Q+A E+ P
Sbjct: 119 YDEAIEYYQKALELDP 134
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 718
G ++G +D + + + + E S + W NL + Y+ QG++ A++ YQ L
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWYNLGNAYYKQGDYDEAIEYYQKAL 96
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 751
+ W NL + Y+ QG++ A++ YQ L A+ L +Y+ + + +
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59
Query: 752 RAIHLAPSNYTLRFDAGVAMQK 773
+A+ L P + ++ G A K
Sbjct: 60 KALELDPRSAEAWYNLGNAYYK 81
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 13/122 (10%)
Query: 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLGD 357
+ ++YNL +Y+ +GDY++A YY +++ ++P +Y LG K GD
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--------LYPNNAEAWYNLGNAYYKQGD 58
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK 417
+ A+ ++K LE+YP+N E LG+ Y + G ++A E +KA ++ P +A+A+ L
Sbjct: 59 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Query: 418 KA 419
A
Sbjct: 119 NA 120
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 15/108 (13%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+Y LG K GD+ A+ ++K LE+YP+N E LG+ Y + G ++A E +KA +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ P +A+A N+G ++++G+++ A + ++ AL
Sbjct: 72 LYPNNAEAWY---------------NLGNAYYKQGDYDEAIEYYQKAL 104
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELY---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 334 EINKPHEFIFP-----YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384
++P +Y LG K GD+ A+ ++K LE+YP+N E + LG+
Sbjct: 72 --------LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGN 119
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 155
LG KQ + +E A +YY KA + + W G +G+ ++A ++ L
Sbjct: 15 LGNAYYKQGDYDE----AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211
E +N A + +G Y +++E+Y++AL+++P+ A + +G + K G
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA-KQNLGNAKQKQG 125
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250
+ P +G YK G +A + +Q+AL+L P N EA L + +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGD---Y 59
Query: 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN 310
+ +E Q+A E+YP A A L N ++ G + + + AL + P + + N
Sbjct: 60 DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY---PNNAEAKQN 116
Query: 311 LARSYHSKG 319
L + +G
Sbjct: 117 LGNAKQKQG 125
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 751
+ W NL + Y+ QG++ A++ YQ L Y +A+ L +Y+ + + +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--YPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 752 RAIHLAPSNYTLRFDAGVAMQK 773
+A+ L P+N ++ G A K
Sbjct: 68 KALELYPNNAEAWYNLGNAYYK 89
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 635 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 694
++A E Y + + + +N A G ++G +D + + + + E ++ + W
Sbjct: 26 DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-----LYPNNAEAW 80
Query: 695 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 728
NL + Y+ QG++ A++ YQ L + N +A+
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAK 114
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 373 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNI 431
P N E LG+ Y + G ++A E +KA ++ P +A+A N+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWY---------------NL 49
Query: 432 GVIHFEKGEFESAHQSFKDAL 452
G ++++G+++ A + ++ AL
Sbjct: 50 GNAYYKQGDYDEAIEYYQKAL 70
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ ++YNL +Y+ +GDY++A YY +++ + N + Y LG K GD+ A
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW----YNLGNAYYKQGDYDEA 62
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+ ++K LE+ P+N E LG+ Y + G ++A E +KA ++DP +A+A+ L A
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 15/108 (13%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A E +KA +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+DP +A+A N+G ++++G+++ A + ++ AL
Sbjct: 72 LDPNNAEAWY---------------NLGNAYYKQGDYDEAIEYYQKAL 104
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 334 -EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384
+ N + Y LG K GD+ A+ ++K LE+ P+N E + LG+
Sbjct: 72 LDPNNAEAW----YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 155
LG KQ + +E A +YY KA +D + W G +G+ ++A ++ L
Sbjct: 15 LGNAYYKQGDYDE----AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211
E D +N A + +G Y +++E+Y++AL++ P+ A + +G + K G
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-KQNLGNAKQKQG 125
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250
+ P +G YK G +A + +Q+AL+LDP N EA L + +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD---Y 59
Query: 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN 310
+ +E Q+A E+ P A A L N ++ G + + + AL + P + + N
Sbjct: 60 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAKQN 116
Query: 311 LARSYHSKG 319
L + +G
Sbjct: 117 LGNAKQKQG 125
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 751
+ W NL + Y+ QG++ A++ YQ L +A+ L +Y+ + + +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 752 RAIHLAPSNYTLRFDAGVAMQK 773
+A+ L P+N ++ G A K
Sbjct: 68 KALELDPNNAEAWYNLGNAYYK 89
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 373 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNI 431
P N E LG+ Y + G ++A E +KA ++DP +A+A N+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY---------------NL 49
Query: 432 GVIHFEKGEFESAHQSFKDAL 452
G ++++G+++ A + ++ AL
Sbjct: 50 GNAYYKQGDYDEAIEYYQKAL 70
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 635 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 694
++A E Y + + +N A G ++G +D + + + + E + + W
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAW 80
Query: 695 INLAHVYFAQGNFALAMKMYQNCLR 719
NL + Y+ QG++ A++ YQ L
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
NL +Y+ +GDY+KA YY ++ E++ P+ +Y LG K GD++ A+ ++K L
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKAL-ELD-PNN-ASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
E+ P+N + G+ Y + G +KA E +KA ++DP +A+A+ L A
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNA 120
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
W G +G+ ++A ++ LE D +N A + +G Y ++E+Y++AL
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
++ P+ A G YK G KA + +Q+AL+LDP N +A L
Sbjct: 71 ELDPNNAKAWYR-RGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
A A L N ++ G + + + AL + P + ++YNL +Y+ +GDY+KA
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELD---PNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384
YY ++ E++ P+ +Y G K GD++ A+ +++K LE+ P+N + + LG+
Sbjct: 65 YYQKAL-ELD-PNN-AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGN 119
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K+ + A +YY KA +D + S W G +G+ ++A ++ LE D +N A
Sbjct: 21 KQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAW 80
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211
+ + +G Y ++E Y++AL++ P+ A + +G + K G
Sbjct: 81 YRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA-KQNLGNAKQKQG 125
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 373 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNI 431
P N E K LG+ Y + G +KA E +KA ++DP +A A N+
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWY---------------NL 49
Query: 432 GVIHFEKGEFESAHQSFKDAL 452
G ++++G+++ A + ++ AL
Sbjct: 50 GNAYYKQGDYQKAIEYYQKAL 70
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 751
+ W NL + Y+ QG++ A++ YQ L +A L +Y+ +Q +
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELD--PNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 752 RAIHLAPSNYTLRFDAGVAMQK 773
+A+ L P+N + G A K
Sbjct: 68 KALELDPNNAKAWYRRGNAYYK 89
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A E +KA +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 405 IDPRDAQARTLLKKA 419
+DP +A+A+ L A
Sbjct: 72 LDPNNAEAKQNLGNA 86
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+ ++YNL +Y+ +GDY++A YY +++ E +Y LG K GD+ A+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQGDYDEAI 63
Query: 363 TNFEKVLEIYPDNCETLKALGH 384
++K LE+ P+N E + LG+
Sbjct: 64 EYYQKALELDPNNAEAKQNLGN 85
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
W G +G+ ++A ++ LE D +N A + +G Y +++E+Y++AL
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 190 QVHPSCPGAIRLGIGLCRYKLG 211
++ P+ A + +G + K G
Sbjct: 71 ELDPNNAEA-KQNLGNAKQKQG 91
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250
+ P +G YK G +A + +Q+AL+LDP N EA L + +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD---Y 59
Query: 251 RKGMEKMQRAFEIYPYCAMALNYLAN 276
+ +E Q+A E+ P A A L N
Sbjct: 60 DEAIEYYQKALELDPNNAEAKQNLGN 85
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 751
+ W NL + Y+ QG++ A++ YQ L +A+ L +Y+ + + +
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 752 RAIHLAPSNYTLRFDAGVAMQK 773
+A+ L P+N + + G A QK
Sbjct: 68 KALELDPNNAEAKQNLGNAKQK 89
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 373 PDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNI 431
P N E LG+ Y + G ++A E +KA ++DP +A+A N+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY---------------NL 49
Query: 432 GVIHFEKGEFESAHQSFKDAL 452
G ++++G+++ A + ++ AL
Sbjct: 50 GNAYYKQGDYDEAIEYYQKAL 70
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 155
LG KQ + +E A +YY KA +D + W G +G+ ++A ++ L
Sbjct: 15 LGNAYYKQGDYDE----AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 156 EADRDNVPA 164
E D +N A
Sbjct: 71 ELDPNNAEA 79
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 140/327 (42%), Gaps = 28/327 (8%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y+ LG + ++ + +E A ++Y A R+ ++ L+A G++E A A+
Sbjct: 70 YSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 153 IVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
L+ + D V + LG GR ++ Y +A++ P+ A +G
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKAL--GRLEEAKACYLKAIETQPNFAVAWS-NLGCVFNAQ 182
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G++ A F++A+ LDP ++A + L + EA + + RA + P A+
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNV---LKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
LA ++ G L A+ + H P +Y NLA + KG +A Y
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNT 296
Query: 331 SVKEINKPHEFIFPYYG-----LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
+++ + P + L ++ + G+ A+ + K LE++P+ L +
Sbjct: 297 ALR--------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQA 412
Q G++++A ++A +I P A A
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFADA 375
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 130/323 (40%), Gaps = 32/323 (9%)
Query: 278 FFFTGQHFLVEQLTETA----LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
+ HF +L +A LA+ + P + +Y NL Y +G ++A +Y +++
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
KP +FI Y L + GD A+ + L+ PD LG++ LG++E
Sbjct: 96 L--KP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 394 KAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
+A+ KA + P A A + N+G + +GE A F+ A+
Sbjct: 153 EAKACYLKAIETQPNFAVAWS---------------NLGCVFNAQGEIWLAIHHFEKAV- 196
Query: 454 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513
+ LD+ + A + NH + N V + L++
Sbjct: 197 -TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-LID 254
Query: 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 573
DT YR + + DAY LA K + ++ + + N AL++ + ++L
Sbjct: 255 LAIDT------YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
Query: 574 SMLGDLELKNDDWVKAKETFRAA 596
+ L +++ + + +A +R A
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKA 331
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 11/226 (4%)
Query: 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148
V ++ LG + Q E LA ++ KA +D + ++ G +L ++A
Sbjct: 168 FAVAWSNLGCVFNAQGE----IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208
+A+ L ++ ACV + +G +++ Y+RA+++ P P A +
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY-CNLANALK 282
Query: 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268
+ G + +A + AL+L P + ++L LA + E I + + ++A E++P A
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIK---REQGNIEEAVRLYRKALEVFPEFA 339
Query: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
A + LA+ Q L E L A+ PT + +Y N+ +
Sbjct: 340 AAHSNLAS--VLQQQGKLQEALMHYKEAI-RISPTFADAYSNMGNT 382
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 90/439 (20%), Positives = 168/439 (38%), Gaps = 72/439 (16%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 71
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 128
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 129 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 184 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG 439
L +Y + G I+ A + R+A ++ P A L A +E KG
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE---------------KG 285
Query: 440 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499
A + AL + T DS
Sbjct: 286 SVAEAEDCYNTALR--LCPTHADS------------------------------------ 307
Query: 500 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 559
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++
Sbjct: 308 -----LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 560 NEALKVNGKYPNALSMLGD 578
EA++++ + +A S +G+
Sbjct: 363 KEAIRISPTFADAYSNMGN 381
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 71/375 (18%), Positives = 146/375 (38%), Gaps = 45/375 (12%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 408 RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 467
A+A + N+G ++ E+G+ + A + ++ AL L
Sbjct: 65 LLAEAYS---------------NLGNVYKERGQLQEAIEHYRHALR-------LKPDFID 102
Query: 468 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 527
I+ +A+++ DM+ + + ++ + V +L LL+ + A Y
Sbjct: 103 GYINLAAALVAAGDME--GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 528 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 587
+ ++ A+ L + A+ + L+I +A+ ++ + +A LG++ + +
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220
Query: 588 KAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 646
+A + RA S + + + L+ + E ++ A + Y R I
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYY---------------EQGLIDLAIDTYRRAIE 265
Query: 647 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 706
A L EKG ++D + D NLA++ QGN
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA-----DSLNNLANIKREQGN 320
Query: 707 FALAMKMYQNCLRKF 721
A+++Y+ L F
Sbjct: 321 IEEAVRLYRKALEVF 335
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 405 IDPR 408
+DPR
Sbjct: 66 LDPR 69
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
LG A + +G Y +++E+Y++AL++ P A +G YK G +A + +Q+AL+
Sbjct: 9 LGNAY--YKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 226 LDP 228
LDP
Sbjct: 66 LDP 68
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
+ ++YNL +Y+ +GDY++A YY +++ + E +Y LG K GD+ A+
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEY 59
Query: 365 FEKVLEIYP 373
++K LE+ P
Sbjct: 60 YQKALELDP 68
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 15/78 (19%)
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVI 434
+ E LG+ Y + G ++A E +KA ++DPR A+A N+G
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA---------------WYNLGNA 46
Query: 435 HFEKGEFESAHQSFKDAL 452
++++G+++ A + ++ AL
Sbjct: 47 YYKQGDYDEAIEYYQKAL 64
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
W G +G+ ++A ++ LE D + A + +G Y +++E+Y++AL
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 190 QVHP 193
++ P
Sbjct: 65 ELDP 68
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G YK G +A + +Q+AL+LDP + EA L + + + +E Q+A E
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALE 65
Query: 263 IYP 265
+ P
Sbjct: 66 LDP 68
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
L N ++ G + + + AL + P + ++YNL +Y+ +GDY++A YY +++
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y +G + GDF A+ ++KVL+ P+N ETL LG Y+ +G A E L+K
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
Query: 405 IDPRDAQARTLLKKA 419
+D A+A +L A
Sbjct: 68 LDTTSAEAYYILGSA 82
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 125 MHEPST-WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183
M E +T ++ G KG+ + A A+K VL+AD +NV LL + G +D++E
Sbjct: 1 MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIE 60
Query: 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
K+ + + + A + +G + + + A A QRA+ L+ +A L ++
Sbjct: 61 SLKKFVVLDTTSAEAYYI-LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV 116
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA--VMDLQ-ANEAAGIRKGME 255
I + IG + G A +A+++ L+ DP NVE L+ L MD+ N+A +E
Sbjct: 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDA------IE 60
Query: 256 KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315
+++ + A A L + F + + A+A+ + +YY L Y
Sbjct: 61 SLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT---VYADAYYKLGLVY 117
Query: 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
S G+++KA A K I+ FI Y +G
Sbjct: 118 DSMGEHDKA---IEAYEKTISIKPGFIRAYQSIG 148
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 106/246 (43%), Gaps = 36/246 (14%)
Query: 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQLGKARQAFQRALQLDPENVEA 233
+ ++ +LE K+AL+V P+ + +GLC R ++ Q+ KA R D V+
Sbjct: 262 KNSWNKALELLKKALEVTPT-SSFLHHQMGLCYRAQMIQIKKATH--NRPKGKDKLKVDE 318
Query: 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293
L++ A+ +A A E A A LAN + GQ+ E +
Sbjct: 319 LISSAIFHFKA---------------AMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRK 363
Query: 294 ALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
AL +T+ + H +Y + +H K + A +Y+ ++K ++
Sbjct: 364 ALRLENITDDHKHQIHYHYGRFQEFHRKSE-NTAIHHYLEALKVKDR-----------SP 411
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
++ KL L+ K L + ++L ALG +Y G+ +A E KA KIDP +A
Sbjct: 412 LRTKLTSALKKLST--KRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENA 469
Query: 411 QARTLL 416
+ T L
Sbjct: 470 EFLTAL 475
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 38/241 (15%)
Query: 195 CPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV----MDLQANEAAG 249
CP G L ++ KA+ AF++AL+++P+N E + A+ +D E +
Sbjct: 137 CPETDCEKGWALLKFGGKYYQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDREGSV 196
Query: 250 IRKGMEKMQRAFEIYP-----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
+ +++A + P +AL H G+ ++ E L + + ++
Sbjct: 197 KSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQIS--------SQ 248
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL---------------- 348
+ A+ Y K + KA L + E+ F+ GL
Sbjct: 249 PYVLRYAAKFYRRKNSWNKA-LELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNR 307
Query: 349 --GQVQLKLGDF-RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
G+ +LK+ + SA+ +F+ +E L ++Y + GQ A+++ RKA ++
Sbjct: 308 PKGKDKLKVDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRL 367
Query: 406 D 406
+
Sbjct: 368 E 368
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL------------------ 213
EF+R + ++ Y AL+V P +L L + +L
Sbjct: 387 EFHRKSENTAIHHYLEALKVKDRSPLRTKLTSALKKLSTKRLCHNALDVQSLSALGFVYK 446
Query: 214 --GKARQA---FQRALQLDPENVEALVALAVMDL 242
G+ RQA +++A ++DPEN E L AL + L
Sbjct: 447 LEGEKRQAAEYYEKAQKIDPENAEFLTALCELRL 480
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y Y+ I + + E++ Y++KA ++D + S + +GQ+ +QA F
Sbjct: 273 YIYMALIMADRNDSTEYY----NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196
E D +N+ + AC+ + ++ D + A + P P
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 68 SPEIDEYYADVRYER-------------IAILNAL-GVYY---TYLGKIETKQREKE-EH 109
+PE+ ++A++ ++ I + N L G+Y +GK R E+
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 151
FI AT KAS++D +G Q+ L + ++++A + F
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
F +Y D++++Y AL++ + C +G L K + +AL+L P+ +
Sbjct: 17 FRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSK 74
Query: 233 ALVALAVMDLQANEAAG 249
L+ A ANE G
Sbjct: 75 VLLRRA----SANEGLG 87
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 22/184 (11%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y LG L+ G+ A K LEI P + + AL ++ + + A E RKA
Sbjct: 53 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 112
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 464
D R+A+ VLNN G +E+ +E A+Q +A D TL +
Sbjct: 113 SDSRNAR---------------VLNNYGGFLYEQKRYEEAYQRLLEASQD----TLYPER 153
Query: 465 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524
++ + S+ K Q FE + L N+ +V +A LL + + V A
Sbjct: 154 SRVFENLGLVSLQMKKPAQAKEYFEKS---LRLNRNQPSVALEMADLLYKEREYVPARQY 210
Query: 525 YRLI 528
Y L
Sbjct: 211 YDLF 214
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 47/213 (22%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y +L + +E F +++ KA ++ P T+ +GQ+ + + A F+
Sbjct: 279 YIFLALTLADKENSQEFF----KFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------------- 198
+ +NV + AC+ + +G++++S F+ P+ P
Sbjct: 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394
Query: 199 -------------------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239
I +GIG K L ARQ+ Q QLD E A + L
Sbjct: 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL--ARQSSQDPTQLDEEKFNAAIKLLT 452
Query: 240 ----MDLQANEA----AGIRKGMEKMQRAFEIY 264
+D ++ +A A ++ MEK+ A E++
Sbjct: 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
++F A +YY A +D +EP + ++ G++E+ LE D+ ALL
Sbjct: 39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98
Query: 168 QACVEFNRGRYSDSL 182
+A + G ++D++
Sbjct: 99 RASANESLGNFTDAM 113
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 284 HFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340
HFL L + + + N PT +SY LA + D E + ++ K ++ E
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTL---ADKENSQEFFKFFQKAVDLNPE 308
Query: 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
+ YY GQ+ L D+++A +F+K + P+N + Y+QL
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-------YPYIQLA 351
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 47/213 (22%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y +L + +E F +++ KA ++ P T+ +GQ+ + + A F+
Sbjct: 275 YIFLALTLADKENSQEFF----KFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 330
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------------- 198
+ +NV + AC+ + +G++++S F+ P+ P
Sbjct: 331 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 390
Query: 199 -------------------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239
I +GIG K L ARQ+ Q QLD E A + L
Sbjct: 391 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL--ARQSSQDPTQLDEEKFNAAIKLLT 448
Query: 240 ----MDLQANEA----AGIRKGMEKMQRAFEIY 264
+D ++ +A A ++ MEK+ A E++
Sbjct: 449 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 481
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
++F A +YY A +D +EP + ++ G++E+ LE D+ ALL
Sbjct: 35 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 94
Query: 168 QACVEFNRGRYSDSL 182
+A + G ++D++
Sbjct: 95 RASANESLGNFTDAM 109
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 284 HFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340
HFL L + + + N PT +SY LA + D E + ++ K ++ E
Sbjct: 249 HFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTL---ADKENSQEFFKFFQKAVDLNPE 304
Query: 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
+ YY GQ+ L D+++A +F+K + P+N + Y+QL
Sbjct: 305 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-------YPYIQLA 347
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 22/184 (11%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y LG L+ G+ A K LEI P + + AL ++ + + A E RKA
Sbjct: 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADEEYRKALA 99
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 464
D R+A+ VLNN G +E+ +E A+Q +A D TL +
Sbjct: 100 SDSRNAR---------------VLNNYGGFLYEQKRYEEAYQRLLEASQD----TLYPER 140
Query: 465 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524
++ + S+ K Q FE + L N+ +V A LL + + V A
Sbjct: 141 SRVFENLGLVSLQXKKPAQAKEYFEKS---LRLNRNQPSVALEXADLLYKEREYVPARQY 197
Query: 525 YRLI 528
Y L
Sbjct: 198 YDLF 201
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 131/329 (39%), Gaps = 28/329 (8%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G+ LLA G++ A S F ++ D DN A +A V G+ +L + +Q+
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMD---------L 242
A RL G K G+L +A F++ L+ +P E EA L D L
Sbjct: 93 FTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL 151
Query: 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302
A + + + + E+ + A A F G+ + A + N
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN- 210
Query: 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------- 355
+ ++Y ++ Y+ GD+E L + ++++ H+ F +Y + KL
Sbjct: 211 --TEAFYKISTLYYQLGDHE-LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267
Query: 356 ---GDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
G + A + +E V++ P E T+++ I + EK E +R +++ +
Sbjct: 268 IRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327
Query: 412 ARTLLKKAGEEVPIEVLNNIGVIHFEKGE 440
LK E IE + + + +E +
Sbjct: 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 99/240 (41%), Gaps = 21/240 (8%)
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
P +I YY V L +G ++AL + KV+++ D GH+ ++ G++++A++
Sbjct: 57 PDNYI-AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAED 115
Query: 398 LLRKAAKIDP---RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 454
+K K +P + +A++ L K+ E ++ L + + F G++ +A L
Sbjct: 116 DFKKVLKSNPSENEEKEAQSQLIKSDE---MQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 455 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 514
+W L I D++ + +ND + ++ L Q
Sbjct: 173 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE---------AFYKISTLYYQ 223
Query: 515 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 574
+ D + R L QD+ + + K ++ + EL+ +G+Y +A S
Sbjct: 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR-----DGRYTDATS 278
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 34/245 (13%)
Query: 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234
+ ++ +LE K+AL+V P+ + GLC Y+ + + R D V+ L
Sbjct: 262 KNSWNKALELLKKALEVTPT-SSFLHHQXGLC-YRAQXIQIKKATHNRPKGKDKLKVDEL 319
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
++ A+ +A A E A A LAN + GQ+ E + A
Sbjct: 320 ISSAIFHFKA---------------AXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKA 364
Query: 295 LA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351
L +T+ + H +Y + +H K + A +Y+ ++K ++ +
Sbjct: 365 LRLENITDDHKHQIHYHYGRFQEFHRKSE-NTAIHHYLEALKVKDR-----------SPL 412
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ KL L+ K L + ++L ALG +Y G+ +A E KA KIDP +A+
Sbjct: 413 RTKLTSALKKLST--KRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAE 470
Query: 412 ARTLL 416
T L
Sbjct: 471 FLTAL 475
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL------------------ 213
EF+R + ++ Y AL+V P +L L + +L
Sbjct: 387 EFHRKSENTAIHHYLEALKVKDRSPLRTKLTSALKKLSTKRLCHNALDVQSLSALGFVYK 446
Query: 214 --GKARQA---FQRALQLDPENVEALVALAVMDL 242
G+ RQA +++A ++DPEN E L AL + L
Sbjct: 447 LEGEKRQAAEYYEKAQKIDPENAEFLTALCELRL 480
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 28/294 (9%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G+ LLA G++ A S F ++ D DN A +A V G+ +L + +Q+
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMD---------L 242
A RL G K G+L +A F++ L+ +P E EA L D L
Sbjct: 93 FTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEXQRLRSQAL 151
Query: 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302
A + + + + E+ + A A F G+ + A + N
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN- 210
Query: 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------- 355
+ ++Y ++ Y+ GD+E L + ++++ H+ F +Y + KL
Sbjct: 211 --TEAFYKISTLYYQLGDHE-LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267
Query: 356 ---GDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKI 405
G + A + +E V + P E T+++ I + EK E +R +++
Sbjct: 268 IRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 25/242 (10%)
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
P +I YY V L G ++AL + KV+++ D GH+ ++ G++++A++
Sbjct: 57 PDNYI-AYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAED 115
Query: 398 LLRKAAKIDP-----RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+K K +P ++AQ++ + + + + LN G G++ +A L
Sbjct: 116 DFKKVLKSNPSENEEKEAQSQLIKSDEXQRLRSQALNAFG-----SGDYTAAIAFLDKIL 170
Query: 453 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 512
+W L I D++ + +ND + ++ L
Sbjct: 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE---------AFYKISTLY 221
Query: 513 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 572
Q+ D + R L QD+ + + K ++ + EL+ +G+Y +A
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR-----DGRYTDA 276
Query: 573 LS 574
S
Sbjct: 277 TS 278
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 117/294 (39%), Gaps = 28/294 (9%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G+ LLA G++ A S F ++ D DN A +A V G+ +L + + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXD 69
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMD---------L 242
A RL G K G+L +A F++ L+ +P E EA L D L
Sbjct: 70 FTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRLRSQAL 128
Query: 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302
A + A + + + E+ + A A F G+ + A +
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE---PRKAISDLKAASKLKS 185
Query: 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------- 355
+ ++Y ++ Y+ GD+E L + ++++ H+ F +Y + KL
Sbjct: 186 DNTEAFYKISTLYYQLGDHE-LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244
Query: 356 ---GDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKI 405
G + A + +E V + P E T+++ I + EK E +R +++
Sbjct: 245 IRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
P +I YY V L G ++AL + KV+ + D GH+ ++ G++++A++
Sbjct: 34 PDNYI-AYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAED 92
Query: 398 LLRKAAKIDP---RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 454
+K K +P + +A + L KA E + L + + F+ ++ +A L
Sbjct: 93 DFKKVLKSNPSEQEEKEAESQLVKADE---XQRLRSQALDAFDGADYTAAITFLDKILEV 149
Query: 455 GIW 457
+W
Sbjct: 150 CVW 152
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
PT + S NLA +G+ E+A Y +++ EF + L V + G + A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP---EFAAAHSNLASVLQQQGKLQEA 62
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGE 421
L ++++ + I P + +G+ ++ ++ A + +A +I+P A A +
Sbjct: 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS------- 115
Query: 422 EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
N+ IH + G A S++ AL
Sbjct: 116 --------NLASIHKDSGNIPEAIASYRTAL 138
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
+G +E+A ++ LE + A A V +G+ ++L YK A+++ P+ A
Sbjct: 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+G ++ + A Q + RA+Q++P +A LA + ++ I + + + A
Sbjct: 82 -NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH---KDSGNIPEAIASYRTA 137
Query: 261 FEIYP-----YCAMA 270
++ P YC +A
Sbjct: 138 LKLKPDFPDAYCNLA 152
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 58/222 (26%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIG 432
P + ++L L +I + G IE+A L RKA ++ P A A + N+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS---------------NLA 50
Query: 433 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 492
+ ++G+ + A +K+A+ I T D+ +
Sbjct: 51 SVLQQQGKLQEALMHYKEAIR--ISPTFADAYS--------------------------- 81
Query: 493 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 552
N+ L+++ D A Y + + DA+ LA+I K N+
Sbjct: 82 --------------NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 553 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 594
+I ALK+ +P+A L DW E +
Sbjct: 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 408 RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
+ R L A L+N+ G F+ A SFK ALG
Sbjct: 108 INFNVRFRLGVA--------LDNL-------GRFDEAIDSFKIALG 138
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA ++
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 406 D 406
D
Sbjct: 174 D 174
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 718
G+ A+ G++ + L QV +A + V DV ++L Y G ++ + L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 719 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 775
N +L L T+ + +++ L++ P N+ +RF GVA+
Sbjct: 70 ADAPDNVKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQAC 170
A +Y+KA +D + + G G + + K ++A F+ L A +N + +LG
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135
Query: 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
V+ + + +L + +RA++++ + A R G+C G L +A F + DP +
Sbjct: 136 VKLEQPKL--ALPYLQRAVELNENDTEA-RFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192
Query: 231 VEALVALAVM-DLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
+A V + N K +E + +A +I P +AL+
Sbjct: 193 ADAFYNAGVTYAYKENR----EKALEMLDKAIDIQPDHMLALH 231
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
Y N A S + E+A +Y K + YYG G V + ++ A FEK
Sbjct: 60 YINFANLLSSVNELERALAFY---DKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR 413
L +N + LG + V+L Q + A L++A +++ D +AR
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEAR 162
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
GDYEKA A K I + E PY + + + AL ++K LE+
Sbjct: 37 GDYEKAA---EAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93
Query: 379 LKALGHIYVQLGQIEKAQELLRKA 402
G++YV ++A+++ KA
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKA 117
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 408 RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
+ R L A L+N+ G F+ A SFK ALG
Sbjct: 108 INFNVRFRLGVA--------LDNL-------GRFDEAIDSFKIALG 138
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA ++
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 406 D 406
D
Sbjct: 174 D 174
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 718
G+ A+ G++ + L QV +A + V DV ++L Y G ++ + L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 719 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 775
N +L L T+ + +++ L++ P N+ +RF GVA+
Sbjct: 70 ADAPDNVKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG +K G E+ L PDN + LG YVQ+ + + A LL K A+ +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 408 RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
+ R L A L N+ G F+ A SFK ALG
Sbjct: 108 INFNVRFRLGVA--------LKNL-------GRFDEAIDSFKIALG 138
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 718
G+ A+ G++ + L QV +A + V DV ++L Y G ++ + L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKTGAVDRGTELLERSL 69
Query: 719 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 775
N +L L T+ + +++ L++ P N+ +RF GVA++
Sbjct: 70 ADAPDNVKVATVLGL--TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLG 124
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ LG LG F A+ +F+ L + P+ + +A+ Y Q+G+ E+A +KA ++
Sbjct: 114 FRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173
Query: 406 D 406
D
Sbjct: 174 D 174
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 19/124 (15%)
Query: 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408
G K G + A+ E+V + + E LG YV+ G +++ ELL ++ P
Sbjct: 15 GISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPD 74
Query: 409 DAQART-----------------LLKKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFK 449
+ + T LL K E P+ V +GV G F+ A SFK
Sbjct: 75 NIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 450 DALG 453
ALG
Sbjct: 135 IALG 138
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ LG LG F A+ +F+ L + P+ + +A+ + Y Q+G E+A +KA ++
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANEL 173
Query: 406 DPRDAQARTLLKK 418
D R A L+ +
Sbjct: 174 DERSAVELALVPR 186
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART 414
D+ A+ + KVL+I +N + L LG + G +E+A+E L KAA ++P + R
Sbjct: 103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 391 QIEKAQELLR-KAAKIDPR-DAQARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 446
Q+E +L+ KA + P +A LL KA + P +E N +G ++++KG+ SAH
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158
Query: 447 SFKDAL 452
F AL
Sbjct: 159 CFSGAL 164
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 88 ALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQA 147
A+G+YY + KI +R Y++K+S +D W+G +GE +QA
Sbjct: 378 AVGIYYLCVNKISEARR-----------YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 148 SSAF 151
SA+
Sbjct: 427 ISAY 430
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 343 FPYYGLGQVQLKLGDFRSA----LTNFEKVL----EIYPDNCETL-KALGHIYVQLGQIE 393
F + +G V + G++++A L EK+ E+ D E L LGH+ +L +
Sbjct: 194 FVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253
Query: 394 KAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
+A + R+A + P++A + IG IH G FE+A F ALG
Sbjct: 254 EALDYHRQALVLIPQNASTYSA---------------IGYIHSLXGNFENAVDYFHTALG 298
Query: 454 ----DGIWLTLLDSKTKTYVIDASASM 476
D +T L + Y+ D+ A +
Sbjct: 299 LRRDDTFSVTXLGHCIEXYIGDSEAYI 325
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 9/161 (5%)
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
C + Y+ + T L E+ AL++ P H +A G+++ A
Sbjct: 158 CHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVXHEVGVVA---FQNGEWKTAEK 214
Query: 327 YYMASVKEINK-PHEFIFPYY-----GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
+++ ++++I +E + LG V KL + AL + L + P N T
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS 274
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGE 421
A+G+I+ G E A + A + D + T L E
Sbjct: 275 AIGYIHSLXGNFENAVDYFHTALGLRRDDTFSVTXLGHCIE 315
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 88 ALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQA 147
A+G YY +G K EH A +Y +KA+ ++ W+ G + E +QA
Sbjct: 95 AVGCYYLXVG-------HKNEH---ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144
Query: 148 SSAFKIVLEADRD-NVPAL-LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205
+A+ + + ++P L +G N + ++ F+ +AL + P P + +G+
Sbjct: 145 XAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAE--RFFSQALSIAPEDP-FVXHEVGV 201
Query: 206 CRYKLGQLGKARQAFQRALQ 225
++ G+ A + F AL+
Sbjct: 202 VAFQNGEWKTAEKWFLDALE 221
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 170 CVEFNRGRYSDSLEFYKRAL--QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
C NR ++S+ ++ +AL +P+ P L G+C K GQ G A +R+L
Sbjct: 87 CGRLNRP--AESMAYFDKALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
P+ A LA + A + +K Q E+
Sbjct: 144 PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+G +LK+ D++ A+ + + LEI P N + L + L + ++A L+KA +I P
Sbjct: 279 IGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338
Query: 408 RDAQARTLLKKAGEEV 423
D + L K +++
Sbjct: 339 EDKAIQAELLKVKQKI 354
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y G+ QL + +F SA +FEKVLE+ P N
Sbjct: 355 YRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y G+ QL + +F SA +FEKVLE+ P N
Sbjct: 355 YRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
YY +G KLGD++ AL N++ +E+ PD
Sbjct: 38 YYLMGNAYRKLGDWQKALNNYQSAIELNPD 67
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
N+G ++L+ + LQ P +G KLG KA +Q A++L+P++
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 233 ALVALAVMDL 242
VMD+
Sbjct: 71 LQARKMVMDI 80
>pdb|1OLP|A Chain A, Alpha Toxin From Clostridium Absonum
pdb|1OLP|B Chain B, Alpha Toxin From Clostridium Absonum
pdb|1OLP|C Chain C, Alpha Toxin From Clostridium Absonum
pdb|1OLP|D Chain D, Alpha Toxin From Clostridium Absonum
Length = 370
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 231 VEALVALAVMDLQANEAAGIR-------KGMEKMQRAFEIYPYCAMALNYLANHFFF--T 281
V + + DL +E IR K + K Q Y A + +HF+ T
Sbjct: 15 VTQAIEMLKHDLSKDEPEAIRNDLSILEKNLHKFQLGSTFPDYDPNAYSLYQDHFWDPDT 74
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKP 338
+F + + AV ++ +++ + LA++ KG+YEKA Y M ++N P
Sbjct: 75 DHNFTQDNKWYLSYAVPDNAESQTRKFATLAKNEWDKGNYEKAAWYLGQGMHYFGDLNTP 134
Query: 339 H 339
+
Sbjct: 135 Y 135
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A
Sbjct: 7 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 59
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|B Chain B, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|C Chain C, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|D Chain D, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|E Chain E, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|F Chain F, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSZ|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VT0|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT1|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT2|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
Length = 526
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 557 ELVNEALKVNGK-----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 611
E E + VNG N + G LK+ D+ +R S+ G Y + L
Sbjct: 35 EFAAEGVIVNGTQFKDTSGNVIHAHGGGMLKHGDYYYWYGEYRDDSNLFLGVSCYRSKDL 94
Query: 612 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 657
NW Y + + AP+L ++E+ K +Y + ++ NG
Sbjct: 95 VNWEYRGEVLSRNSAPELNHCNIERPKVMYNASTGEFVMWMHWENG 140
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 349 GQVQLKLGDFRSALTNFEKVLEIYPDN 375
G+ L + DF A +F+KVL++YP+N
Sbjct: 237 GEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTN-------FEKVLEI 371
+ E+ G Y M ++E+ + ++ + G+G L +G FR ++N FE L +
Sbjct: 294 EVEEKGNYLMKKLQEMKEEYDVVADVRGMG---LMIGIQFREEVSNREVATKCFENKLLV 350
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
P T++ L + V+ G+I+ A E L+K
Sbjct: 351 VPAGNNTIRFLPPLTVEYGEIDLAVETLKKV 381
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
P + N Y KGDY A +Y +VK P I Y KL +F+
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAIL-YSNRAACLTKLMEFQR 65
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR 413
AL + + + + + V + + KAQ A ++DP + +AR
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 19/110 (17%)
Query: 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192
KG KG+ A + ++ D +N A + NR L ++RAL
Sbjct: 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALD-- 68
Query: 193 PSCPGAIRLGIGL---------CRYKLGQLGKARQAFQRALQLDPENVEA 233
C IRL C + + KA++A++ ALQ+DP N EA
Sbjct: 69 -DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---- 161
K++ F A ++Y+KA +D + V + + KG+ + + +E R+N
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75
Query: 162 -----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
A +G + F +Y D++ FY ++L H +
Sbjct: 76 RMIAYAYARIGNS--YFKEEKYKDAIHFYNKSLAEHRT 111
>pdb|1YY8|B Chain B, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY8|D Chain D, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY9|D Chain D, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 221
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 20/84 (23%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
F L ++ +N ++ V + LQ+N+ A IY YCA AL Y F
Sbjct: 63 FTSRLSINKDNSKSQVFFKMNSLQSNDTA--------------IY-YCARALTYYDYEFA 107
Query: 280 FTGQHFLVEQLTETALAVTNHGPT 303
+ GQ LV T A + GP+
Sbjct: 108 YWGQGTLV-----TVSAASTKGPS 126
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 45/221 (20%)
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+RLG+ L Y LG+ A F+RAL+ +P++ EAL LA L+ + +E +
Sbjct: 9 LRLGVQL--YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL---VNPALENGK 63
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
P YL + S +Y L Y
Sbjct: 64 TLVARTP------RYLGGYMVL------------------------SEAYVAL---YRQA 90
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYG-----LGQVQLKLGDFRSALTNFEKVLEIYP 373
D E+ G Y+ + K E + P Y G V LG+ A + ++ L +
Sbjct: 91 EDRER-GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E 148
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART 414
D E AL +Y+ +G++++A KA + P+D R
Sbjct: 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV 189
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ 207
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ 207
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG Q + + ++A+ ++ LE+ P+N + L AL Y + A E L+ K +P
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 408 R 408
+
Sbjct: 165 K 165
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 96/267 (35%), Gaps = 34/267 (12%)
Query: 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGM 254
PGA G L R K G L + A+ DP + EA L + + NE A I
Sbjct: 66 PGAFEEG--LKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA-- 121
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+QR E+ P AL LA + T + E P + N S
Sbjct: 122 --LQRCLELQPNNLKALMALAVSYTNTSHQ---QDACEALKNWIKQNPKYKYLVKNKKGS 176
Query: 315 YHSKGDYEKAGL--YYMASVKEI-----NKPHEFIFP--YYGLGQVQLKLGDFRSALTNF 365
K+ + + VKE+ ++ + I P GLG + G+F A+ F
Sbjct: 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236
Query: 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPI 425
L + P++ LG + E+A E +A +I P ++R
Sbjct: 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY----------- 285
Query: 426 EVLNNIGVIHFEKGEFESAHQSFKDAL 452
N+G+ G + A +F AL
Sbjct: 286 ----NLGISCINLGAYREAVSNFLTAL 308
>pdb|1GYG|A Chain A, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1GYG|B Chain B, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1CA1|A Chain A, Alpha-Toxin From Clostridium Perfringens
Length = 370
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAF------EIYP-YCAMALNYLANHFFF--T 281
V V++ DL NE +RK +E ++ YP Y A + +HF+ T
Sbjct: 15 VTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDT 74
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKP 338
+F + A ++ + G ++ + LAR +G+Y++A Y M +I+ P
Sbjct: 75 DNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTP 134
Query: 339 H 339
+
Sbjct: 135 Y 135
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408
G Q+K+ +F +A+ + K +E+ P N Y +LG A + +A IDP
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78
Query: 409 DAQA 412
++A
Sbjct: 79 YSKA 82
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---- 161
K++ F A ++Y+KA +D + + + KG+ + + +E R+N
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75
Query: 162 -----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
A +G + F +Y D++ FY ++L H +
Sbjct: 76 RQIAKAYARIGNSY--FKEEKYKDAIHFYNKSLAEHRT 111
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---- 161
K++ F A ++Y+KA +D + + + KG+ + + +E R+N
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75
Query: 162 -----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
A +G + F +Y D++ FY ++L H +
Sbjct: 76 RQIAKAYARIGNSY--FKEEKYKDAIHFYNKSLAEHRT 111
>pdb|1QM6|A Chain A, R32 Form Of Clostridium Perfringens Alpha-Toxin Strain
pdb|1QM6|B Chain B, R32 Form Of Clostridium Perfringens Alpha-Toxin Strain
pdb|1QMD|A Chain A, Calcium Bound Closed Form Alpha-Toxin From Clostridium
Perfringens
pdb|1QMD|B Chain B, Calcium Bound Closed Form Alpha-Toxin From Clostridium
Perfringens
pdb|2WXT|A Chain A, Clostridium Perfringens Alpha-Toxin Strain Nctc8237
Length = 370
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAF------EIYP-YCAMALNYLANHFFF--T 281
V V++ DL NE +RK +E ++ YP Y A + +HF+ T
Sbjct: 15 VTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDT 74
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKP 338
+F + A ++ + G ++ + LAR +G+Y++A Y M +I+ P
Sbjct: 75 DNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTP 134
Query: 339 H 339
+
Sbjct: 135 Y 135
>pdb|2RFB|A Chain A, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|B Chain B, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFB|C Chain C, Crystal Structure Of A Cytochrome P450 From The
Thermoacidophilic Archaeon Picrophilus Torridus
pdb|2RFC|A Chain A, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|B Chain B, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|C Chain C, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
pdb|2RFC|D Chain D, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
Cytochrome P450 From The Thermoacidophilic Archaeon
Picrophilus Torridus
Length = 343
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 958 MDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAAR 1017
MD E E D S Y P ++ND D +EE +ND + +++ D+ E A +
Sbjct: 50 MDNPEHKEFRDISAPYFLP-SKINDYKDFIEETSNDLI--KNIDNKDIISEYAVRLPVNI 106
Query: 1018 RRRALSESDDDEPFERQLRD 1037
+ L D D P + D
Sbjct: 107 ISKILGIPDSDMPLFKLWSD 126
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEF------------IFPYYGLGQVQLKLGDFRSAL 362
Y +G Y++A L Y V + F + + L LKL F +A+
Sbjct: 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL 416
+ K LE+ +N + L G ++ + E A+ +K ++ P + A+T L
Sbjct: 217 ESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,410,702
Number of Sequences: 62578
Number of extensions: 1188692
Number of successful extensions: 3853
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3438
Number of HSP's gapped (non-prelim): 326
length of query: 1065
length of database: 14,973,337
effective HSP length: 109
effective length of query: 956
effective length of database: 8,152,335
effective search space: 7793632260
effective search space used: 7793632260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)