Query 001509
Match_columns 1065
No_of_seqs 1458 out of 4792
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2002 TPR-containing nuclear 100.0 2E-112 4E-117 947.3 94.3 976 1-1031 3-1017(1018)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-48 2.3E-53 502.2 81.0 673 20-773 207-883 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-48 4.5E-53 499.5 82.5 656 37-772 122-781 (899)
4 KOG2002 TPR-containing nuclear 100.0 4.2E-44 9.2E-49 400.8 70.3 617 23-759 147-801 (1018)
5 KOG4626 O-linked N-acetylgluco 100.0 1.8E-45 4E-50 389.5 40.1 462 124-706 44-505 (966)
6 KOG4626 O-linked N-acetylgluco 100.0 2.5E-44 5.4E-49 381.0 38.5 473 28-588 36-508 (966)
7 PRK11447 cellulose synthase su 100.0 5.7E-41 1.2E-45 428.9 75.9 626 37-760 25-704 (1157)
8 PRK11447 cellulose synthase su 100.0 5E-41 1.1E-45 429.5 75.3 598 82-773 27-683 (1157)
9 PRK09782 bacteriophage N4 rece 100.0 2.4E-35 5.2E-40 358.0 71.8 633 40-771 44-721 (987)
10 PRK09782 bacteriophage N4 rece 100.0 6.6E-34 1.4E-38 345.5 66.9 634 21-768 59-751 (987)
11 TIGR00990 3a0801s09 mitochondr 100.0 4E-32 8.6E-37 327.0 56.4 437 130-683 129-573 (615)
12 TIGR00990 3a0801s09 mitochondr 100.0 5E-32 1.1E-36 326.1 55.6 438 83-602 127-574 (615)
13 KOG2076 RNA polymerase III tra 100.0 1.4E-29 3.1E-34 283.3 57.0 666 40-754 139-893 (895)
14 KOG0495 HAT repeat protein [RN 100.0 6.8E-27 1.5E-31 250.8 63.6 563 108-766 265-856 (913)
15 PLN03077 Protein ECB2; Provisi 100.0 2.1E-27 4.6E-32 297.6 67.6 627 35-772 46-702 (857)
16 PLN03077 Protein ECB2; Provisi 100.0 5.3E-27 1.2E-31 294.0 61.1 593 85-759 53-656 (857)
17 KOG0495 HAT repeat protein [RN 100.0 5.1E-25 1.1E-29 236.5 64.3 606 33-764 278-888 (913)
18 KOG2076 RNA polymerase III tra 100.0 1E-25 2.2E-30 252.6 59.2 612 83-778 139-883 (895)
19 PRK10049 pgaA outer membrane p 100.0 6.8E-27 1.5E-31 286.2 48.9 442 114-602 2-459 (765)
20 PRK10049 pgaA outer membrane p 100.0 6.8E-27 1.5E-31 286.2 46.8 425 89-575 21-466 (765)
21 PRK15174 Vi polysaccharide exp 100.0 1.6E-26 3.5E-31 276.6 48.4 361 127-567 41-405 (656)
22 PRK15174 Vi polysaccharide exp 100.0 1E-25 2.2E-30 269.8 52.7 381 140-600 17-404 (656)
23 KOG2376 Signal recognition par 100.0 1.4E-26 2.9E-31 247.5 35.6 453 250-772 28-503 (652)
24 KOG0547 Translocase of outer m 100.0 1.8E-25 3.9E-30 233.1 42.0 238 376-683 326-568 (606)
25 KOG2003 TPR repeat-containing 100.0 4.5E-25 9.8E-30 226.7 35.1 469 109-666 216-708 (840)
26 KOG0547 Translocase of outer m 100.0 4.3E-24 9.3E-29 222.9 42.8 430 130-650 117-569 (606)
27 KOG1127 TPR repeat-containing 99.9 5.8E-23 1.3E-27 230.7 49.2 578 109-770 473-1118(1238)
28 KOG2003 TPR repeat-containing 99.9 3.4E-24 7.5E-29 220.2 34.9 464 129-683 202-691 (840)
29 PRK14574 hmsH outer membrane p 99.9 8.9E-23 1.9E-27 243.7 51.8 453 108-604 48-518 (822)
30 PLN03218 maturation of RBCL 1; 99.9 2.6E-21 5.6E-26 237.6 65.8 543 112-756 355-909 (1060)
31 PRK14574 hmsH outer membrane p 99.9 3.1E-22 6.8E-27 239.0 54.0 465 116-654 22-520 (822)
32 PLN03218 maturation of RBCL 1; 99.9 1.5E-20 3.3E-25 230.9 65.1 528 39-682 369-910 (1060)
33 KOG1173 Anaphase-promoting com 99.9 9.7E-23 2.1E-27 217.4 39.5 288 423-770 242-532 (611)
34 KOG1173 Anaphase-promoting com 99.9 2E-22 4.3E-27 215.0 41.1 461 107-683 29-520 (611)
35 KOG1155 Anaphase-promoting com 99.9 1.7E-21 3.7E-26 202.5 45.7 441 42-568 80-539 (559)
36 PLN03081 pentatricopeptide (PP 99.9 4.8E-22 1E-26 243.3 47.5 467 40-600 87-558 (697)
37 PLN03081 pentatricopeptide (PP 99.9 9.2E-22 2E-26 240.8 49.5 463 129-682 88-558 (697)
38 KOG1126 DNA-binding cell divis 99.9 3E-23 6.4E-28 226.5 28.6 312 81-411 315-626 (638)
39 KOG1127 TPR repeat-containing 99.9 1.8E-20 3.9E-25 211.0 51.0 590 107-756 381-996 (1238)
40 KOG1155 Anaphase-promoting com 99.9 1.3E-20 2.8E-25 196.0 44.5 444 131-682 81-554 (559)
41 KOG0548 Molecular co-chaperone 99.9 2E-21 4.3E-26 207.1 36.2 260 344-677 226-485 (539)
42 KOG1126 DNA-binding cell divis 99.9 1.2E-22 2.6E-27 221.9 26.2 300 350-726 327-626 (638)
43 KOG1915 Cell cycle control pro 99.9 1.2E-18 2.6E-23 181.3 52.6 480 115-660 60-548 (677)
44 KOG1156 N-terminal acetyltrans 99.9 3.9E-19 8.4E-24 192.9 50.9 447 128-598 7-467 (700)
45 KOG0624 dsRNA-activated protei 99.9 1.1E-20 2.4E-25 188.6 33.9 345 123-575 33-380 (504)
46 PRK11788 tetratricopeptide rep 99.9 8.6E-21 1.9E-25 217.4 37.0 303 344-719 37-346 (389)
47 PRK11788 tetratricopeptide rep 99.9 2.8E-20 6.1E-25 213.2 38.4 300 128-453 35-346 (389)
48 KOG0548 Molecular co-chaperone 99.9 3.8E-20 8.3E-25 197.4 35.9 110 131-241 5-114 (539)
49 KOG4162 Predicted calmodulin-b 99.9 2.8E-18 6E-23 190.1 48.5 420 266-765 321-792 (799)
50 KOG1156 N-terminal acetyltrans 99.9 8E-18 1.7E-22 182.8 50.1 539 162-810 7-569 (700)
51 KOG0624 dsRNA-activated protei 99.9 9.3E-20 2E-24 182.1 31.7 321 80-414 35-379 (504)
52 KOG4162 Predicted calmodulin-b 99.9 2.4E-18 5.2E-23 190.6 43.9 430 126-603 321-787 (799)
53 KOG1174 Anaphase-promoting com 99.9 1.9E-18 4.2E-23 177.0 38.7 193 509-720 307-500 (564)
54 KOG1915 Cell cycle control pro 99.9 3.8E-16 8.2E-21 162.9 51.2 492 148-758 59-587 (677)
55 KOG1174 Anaphase-promoting com 99.8 5.5E-17 1.2E-21 166.4 40.9 415 160-659 95-512 (564)
56 KOG3785 Uncharacterized conser 99.8 1.7E-16 3.7E-21 159.5 37.4 333 345-760 154-494 (557)
57 PF13429 TPR_15: Tetratricopep 99.8 1.9E-19 4.2E-24 194.9 14.2 265 429-756 12-277 (280)
58 KOG2047 mRNA splicing factor [ 99.8 3.8E-14 8.3E-19 153.6 53.1 628 35-759 22-690 (835)
59 TIGR00540 hemY_coli hemY prote 99.8 1.7E-16 3.6E-21 180.8 37.4 303 131-453 87-398 (409)
60 KOG1129 TPR repeat-containing 99.8 5E-17 1.1E-21 161.8 27.8 242 274-577 229-470 (478)
61 PRK12370 invasion protein regu 99.8 1E-16 2.2E-21 189.5 32.8 252 142-405 275-535 (553)
62 PF13429 TPR_15: Tetratricopep 99.8 7E-19 1.5E-23 190.5 12.9 262 167-453 13-276 (280)
63 KOG1129 TPR repeat-containing 99.8 8.3E-18 1.8E-22 167.2 18.9 267 136-410 187-463 (478)
64 PRK12370 invasion protein regu 99.8 1.5E-16 3.2E-21 188.1 31.5 217 177-404 276-501 (553)
65 KOG2047 mRNA splicing factor [ 99.8 1.5E-12 3.2E-17 141.5 58.6 309 432-812 354-690 (835)
66 KOG2376 Signal recognition par 99.8 1.6E-14 3.5E-19 155.8 43.2 228 134-376 18-258 (652)
67 TIGR00540 hemY_coli hemY prote 99.8 3.6E-15 7.9E-20 169.9 39.0 290 107-405 97-399 (409)
68 PRK10747 putative protoheme IX 99.8 2.3E-15 4.9E-20 170.5 36.5 296 131-454 87-390 (398)
69 KOG3785 Uncharacterized conser 99.8 3.8E-15 8.1E-20 149.9 33.1 203 137-391 31-234 (557)
70 KOG0550 Molecular chaperone (D 99.7 2.5E-16 5.3E-21 162.4 23.1 313 163-578 50-362 (486)
71 COG3063 PilF Tfp pilus assembl 99.7 6E-16 1.3E-20 148.3 23.0 208 342-605 35-242 (250)
72 PRK11189 lipoprotein NlpI; Pro 99.7 2.6E-15 5.7E-20 162.5 29.8 217 108-333 40-264 (296)
73 KOG1125 TPR repeat-containing 99.7 5.5E-16 1.2E-20 167.3 23.9 257 429-746 289-561 (579)
74 PRK10747 putative protoheme IX 99.7 2.7E-14 5.9E-19 161.7 38.4 284 108-406 98-391 (398)
75 KOG1125 TPR repeat-containing 99.7 1.4E-15 2.9E-20 164.3 24.0 234 132-374 289-530 (579)
76 PRK11189 lipoprotein NlpI; Pro 99.7 3.2E-15 6.8E-20 161.9 26.5 241 52-315 38-281 (296)
77 KOG0550 Molecular chaperone (D 99.7 1E-15 2.2E-20 157.9 20.5 274 106-408 61-353 (486)
78 COG3063 PilF Tfp pilus assembl 99.7 1.1E-14 2.5E-19 139.6 25.4 208 197-411 35-242 (250)
79 TIGR02521 type_IV_pilW type IV 99.7 6.5E-15 1.4E-19 155.5 26.7 204 340-599 29-232 (234)
80 TIGR02521 type_IV_pilW type IV 99.7 1.3E-14 2.8E-19 153.2 27.5 197 83-294 31-229 (234)
81 COG2956 Predicted N-acetylgluc 99.7 4E-13 8.6E-18 134.7 35.3 239 130-407 37-280 (389)
82 COG2956 Predicted N-acetylgluc 99.7 2.7E-13 5.9E-18 135.9 32.1 297 201-563 39-345 (389)
83 KOG1840 Kinesin light chain [C 99.7 8.5E-14 1.8E-18 155.7 31.7 259 263-565 194-479 (508)
84 KOG1840 Kinesin light chain [C 99.7 1E-13 2.2E-18 155.0 31.6 259 298-598 192-478 (508)
85 PLN02789 farnesyltranstransfer 99.6 8.7E-14 1.9E-18 149.6 28.9 202 112-317 55-267 (320)
86 PF12569 NARP1: NMDA receptor- 99.6 2.4E-12 5.2E-17 146.3 41.7 328 128-535 4-338 (517)
87 cd05804 StaR_like StaR_like; a 99.6 6.6E-13 1.4E-17 150.0 36.3 317 124-455 2-337 (355)
88 PF12569 NARP1: NMDA receptor- 99.6 7E-12 1.5E-16 142.6 42.1 310 107-453 17-333 (517)
89 cd05804 StaR_like StaR_like; a 99.6 9.9E-13 2.1E-17 148.6 34.1 309 81-406 4-337 (355)
90 PLN02789 farnesyltranstransfer 99.6 4.9E-13 1.1E-17 143.8 27.9 223 109-388 35-267 (320)
91 PRK14720 transcript cleavage f 99.6 1.2E-09 2.6E-14 129.6 57.1 249 121-409 24-310 (906)
92 TIGR03302 OM_YfiO outer membra 99.5 1.1E-12 2.5E-17 138.2 24.4 194 123-373 28-234 (235)
93 KOG4340 Uncharacterized conser 99.5 1.4E-11 3E-16 121.9 29.5 377 316-770 21-457 (459)
94 KOG4340 Uncharacterized conser 99.5 1E-11 2.2E-16 122.7 26.7 423 106-607 22-451 (459)
95 TIGR03302 OM_YfiO outer membra 99.5 2.4E-12 5.1E-17 135.8 24.0 194 158-408 29-235 (235)
96 PRK15359 type III secretion sy 99.5 5.6E-13 1.2E-17 126.9 15.7 128 113-244 12-139 (144)
97 COG3071 HemY Uncharacterized e 99.5 3.4E-10 7.3E-15 117.9 35.3 296 133-453 89-389 (400)
98 COG3071 HemY Uncharacterized e 99.4 4.7E-10 1E-14 116.9 33.8 297 348-724 90-394 (400)
99 KOG1130 Predicted G-alpha GTPa 99.4 5.9E-12 1.3E-16 129.7 17.4 274 349-681 24-344 (639)
100 KOG3617 WD40 and TPR repeat-co 99.4 1.7E-08 3.7E-13 112.8 45.2 611 27-761 713-1364(1416)
101 PRK15359 type III secretion sy 99.4 6.7E-12 1.5E-16 119.5 15.2 126 148-280 13-138 (144)
102 PRK04841 transcriptional regul 99.4 2.6E-09 5.7E-14 136.7 43.2 382 41-455 342-761 (903)
103 PRK04841 transcriptional regul 99.4 2.1E-09 4.5E-14 137.6 41.9 389 269-722 342-762 (903)
104 PRK10370 formate-dependent nit 99.4 3.4E-11 7.4E-16 121.1 20.2 123 109-232 54-179 (198)
105 KOG1130 Predicted G-alpha GTPa 99.4 1E-11 2.2E-16 127.9 15.8 304 203-585 23-370 (639)
106 PRK14720 transcript cleavage f 99.3 4.8E-11 1E-15 141.3 21.3 225 497-772 26-268 (906)
107 KOG3060 Uncharacterized conser 99.3 3.9E-10 8.4E-15 110.0 22.7 211 52-277 24-234 (289)
108 KOG3617 WD40 and TPR repeat-co 99.3 2.2E-07 4.8E-12 104.2 46.1 346 238-720 807-1174(1416)
109 KOG1128 Uncharacterized conser 99.3 1E-10 2.2E-15 130.1 20.2 216 44-298 402-617 (777)
110 COG5010 TadD Flp pilus assembl 99.3 3E-10 6.4E-15 112.4 21.1 179 112-295 51-229 (257)
111 KOG2053 Mitochondrial inherita 99.3 5.1E-07 1.1E-11 103.5 49.7 229 140-375 21-259 (932)
112 PRK10370 formate-dependent nit 99.3 3E-10 6.5E-15 114.3 21.7 125 141-269 52-179 (198)
113 KOG1128 Uncharacterized conser 99.3 1.3E-09 2.8E-14 121.5 28.2 224 301-600 394-617 (777)
114 TIGR02552 LcrH_SycD type III s 99.3 7.3E-11 1.6E-15 112.3 15.6 119 115-234 4-122 (135)
115 PRK15179 Vi polysaccharide bio 99.2 7.1E-10 1.5E-14 131.2 23.5 153 114-270 72-224 (694)
116 COG5010 TadD Flp pilus assembl 99.2 1.5E-09 3.2E-14 107.6 21.5 179 145-331 50-228 (257)
117 TIGR02552 LcrH_SycD type III s 99.2 4.4E-10 9.6E-15 106.9 15.5 119 149-271 4-122 (135)
118 KOG3060 Uncharacterized conser 99.2 1E-08 2.2E-13 100.3 24.2 166 129-298 53-221 (289)
119 PRK15179 Vi polysaccharide bio 99.2 2.1E-09 4.5E-14 127.3 21.7 175 41-233 50-224 (694)
120 PRK15363 pathogenicity island 99.2 6.5E-10 1.4E-14 102.9 13.7 109 120-229 26-135 (157)
121 KOG0553 TPR repeat-containing 99.1 5.5E-10 1.2E-14 112.6 13.4 116 130-246 83-198 (304)
122 PRK10866 outer membrane biogen 99.1 1.9E-08 4.2E-13 104.5 24.5 86 126-211 30-120 (243)
123 PF04733 Coatomer_E: Coatomer 99.1 3.1E-09 6.7E-14 113.2 18.2 255 276-602 9-268 (290)
124 KOG2471 TPR repeat-containing 99.1 9.2E-08 2E-12 101.5 27.7 170 346-548 210-381 (696)
125 PF04733 Coatomer_E: Coatomer 99.1 4.3E-09 9.4E-14 112.1 18.5 123 308-453 105-229 (290)
126 COG4783 Putative Zn-dependent 99.1 8.5E-09 1.9E-13 110.7 20.5 153 159-335 303-455 (484)
127 PF13525 YfiO: Outer membrane 99.1 1.2E-08 2.6E-13 103.7 20.7 189 127-361 4-197 (203)
128 KOG1914 mRNA cleavage and poly 99.1 1.6E-05 3.5E-10 86.3 43.9 400 118-599 10-464 (656)
129 COG4783 Putative Zn-dependent 99.1 2.3E-08 5E-13 107.4 22.4 153 193-372 303-455 (484)
130 PRK10866 outer membrane biogen 99.1 4E-08 8.7E-13 102.2 23.5 187 160-366 30-236 (243)
131 KOG2053 Mitochondrial inherita 99.0 5E-05 1.1E-09 87.7 49.2 295 107-407 22-339 (932)
132 KOG0553 TPR repeat-containing 99.0 2.3E-09 5E-14 108.2 13.0 119 426-587 82-200 (304)
133 PF13525 YfiO: Outer membrane 99.0 5.1E-08 1.1E-12 99.1 22.3 177 304-555 4-197 (203)
134 PRK15363 pathogenicity island 99.0 9.6E-09 2.1E-13 95.3 14.6 109 154-266 26-135 (157)
135 PLN03088 SGT1, suppressor of 99.0 6.9E-09 1.5E-13 115.0 16.5 113 131-244 5-117 (356)
136 COG4785 NlpI Lipoprotein NlpI, 98.9 5.6E-08 1.2E-12 92.5 17.4 133 81-226 63-196 (297)
137 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.7E-08 5.9E-13 92.1 14.7 107 128-234 2-113 (119)
138 KOG3616 Selective LIM binding 98.9 4.6E-05 1E-09 84.9 39.9 79 106-185 456-554 (1636)
139 PLN03088 SGT1, suppressor of 98.9 3.8E-08 8.3E-13 109.2 16.3 112 165-280 5-116 (356)
140 KOG2300 Uncharacterized conser 98.8 0.00032 6.9E-09 75.5 43.1 480 198-751 8-551 (629)
141 COG4785 NlpI Lipoprotein NlpI, 98.8 1.5E-07 3.3E-12 89.6 15.9 126 128-258 65-190 (297)
142 COG4235 Cytochrome c biogenesi 98.8 9.1E-08 2E-12 97.8 15.5 121 110-231 138-261 (287)
143 KOG1941 Acetylcholine receptor 98.8 1.4E-06 3E-11 89.5 23.7 313 129-453 7-359 (518)
144 PRK02603 photosystem I assembl 98.8 1.6E-07 3.5E-12 93.1 16.1 119 125-267 32-153 (172)
145 PRK15331 chaperone protein Sic 98.8 1.1E-07 2.4E-12 88.6 13.6 110 119-230 28-137 (165)
146 KOG1941 Acetylcholine receptor 98.8 1.5E-06 3.3E-11 89.2 22.8 247 306-599 7-275 (518)
147 KOG1914 mRNA cleavage and poly 98.8 0.00032 6.8E-09 76.7 41.0 189 518-722 309-503 (656)
148 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.6E-07 3.5E-12 86.9 14.7 107 306-412 3-112 (119)
149 KOG2471 TPR repeat-containing 98.8 1.5E-05 3.3E-10 85.2 30.4 440 109-596 32-681 (696)
150 KOG1070 rRNA processing protei 98.8 3.1E-06 6.6E-11 101.1 27.4 229 17-264 1435-1664(1710)
151 KOG2300 Uncharacterized conser 98.7 0.00069 1.5E-08 73.0 44.3 424 42-531 9-514 (629)
152 cd00189 TPR Tetratricopeptide 98.7 1.1E-07 2.4E-12 83.7 11.8 98 130-228 2-99 (100)
153 PRK11906 transcriptional regul 98.7 8E-07 1.7E-11 96.6 20.2 148 109-261 273-434 (458)
154 PF13414 TPR_11: TPR repeat; P 98.7 4E-08 8.7E-13 80.5 8.1 67 127-193 2-69 (69)
155 PRK11906 transcriptional regul 98.7 6.8E-07 1.5E-11 97.2 19.3 166 122-291 242-430 (458)
156 PRK10803 tol-pal system protei 98.7 2.1E-07 4.5E-12 97.4 14.6 111 652-764 142-254 (263)
157 PRK10803 tol-pal system protei 98.7 4E-07 8.8E-12 95.2 16.7 107 128-234 142-254 (263)
158 COG4105 ComL DNA uptake lipopr 98.7 7.7E-06 1.7E-10 82.0 24.6 82 127-208 33-119 (254)
159 COG4235 Cytochrome c biogenesi 98.7 7E-07 1.5E-11 91.4 17.6 120 178-298 138-257 (287)
160 KOG3081 Vesicle coat complex C 98.7 1.2E-05 2.6E-10 79.9 25.3 248 275-597 15-268 (299)
161 COG1729 Uncharacterized protei 98.7 1.8E-07 3.9E-12 94.5 13.1 108 655-764 144-252 (262)
162 PRK02603 photosystem I assembl 98.7 4.8E-07 1E-11 89.7 15.7 121 497-651 30-153 (172)
163 PF13414 TPR_11: TPR repeat; P 98.7 7.3E-08 1.6E-12 79.0 8.2 67 161-228 2-69 (69)
164 CHL00033 ycf3 photosystem I as 98.7 6E-07 1.3E-11 88.7 16.2 100 111-211 16-120 (168)
165 PRK10153 DNA-binding transcrip 98.7 1.1E-06 2.4E-11 101.5 20.5 141 124-269 333-488 (517)
166 PF12895 Apc3: Anaphase-promot 98.7 5.1E-08 1.1E-12 83.4 7.1 81 141-223 2-84 (84)
167 PF09976 TPR_21: Tetratricopep 98.7 5.1E-07 1.1E-11 86.5 14.5 123 280-403 23-145 (145)
168 PF09976 TPR_21: Tetratricopep 98.7 9E-07 2E-11 84.8 16.1 117 140-260 23-144 (145)
169 COG4105 ComL DNA uptake lipopr 98.7 7.5E-06 1.6E-10 82.1 22.8 195 161-375 33-237 (254)
170 KOG0543 FKBP-type peptidyl-pro 98.6 4.7E-07 1E-11 95.8 14.4 139 42-226 210-355 (397)
171 PF13432 TPR_16: Tetratricopep 98.6 9.6E-08 2.1E-12 77.1 7.0 63 133-195 2-64 (65)
172 PF14938 SNAP: Soluble NSF att 98.6 9.6E-07 2.1E-11 95.1 16.9 111 654-764 116-233 (282)
173 PRK10153 DNA-binding transcrip 98.6 9E-07 2E-11 102.1 17.5 124 107-232 355-488 (517)
174 COG3898 Uncharacterized membra 98.6 0.00013 2.9E-09 76.2 30.7 302 167-565 89-392 (531)
175 KOG3081 Vesicle coat complex C 98.6 5.2E-05 1.1E-09 75.5 26.3 234 500-764 39-279 (299)
176 PF14938 SNAP: Soluble NSF att 98.6 1.4E-06 3E-11 93.9 16.9 221 357-649 30-268 (282)
177 cd00189 TPR Tetratricopeptide 98.6 5.1E-07 1.1E-11 79.3 11.4 99 85-194 2-100 (100)
178 KOG1070 rRNA processing protei 98.6 1.6E-05 3.5E-10 95.2 26.4 213 113-333 1443-1662(1710)
179 KOG0543 FKBP-type peptidyl-pro 98.6 1.2E-06 2.7E-11 92.7 15.4 132 131-265 211-357 (397)
180 CHL00033 ycf3 photosystem I as 98.6 1.3E-06 2.8E-11 86.3 14.8 108 303-410 33-154 (168)
181 PF12895 Apc3: Anaphase-promot 98.6 8.9E-08 1.9E-12 81.9 5.5 80 108-188 3-84 (84)
182 COG0457 NrfG FOG: TPR repeat [ 98.6 0.0002 4.3E-09 75.4 32.6 224 108-374 37-268 (291)
183 PF13432 TPR_16: Tetratricopep 98.6 2.7E-07 5.8E-12 74.5 7.7 65 346-410 1-65 (65)
184 KOG1258 mRNA processing protei 98.5 0.0026 5.7E-08 71.4 40.5 116 144-263 61-180 (577)
185 COG0457 NrfG FOG: TPR repeat [ 98.5 0.0002 4.4E-09 75.3 31.4 226 142-408 37-268 (291)
186 COG1729 Uncharacterized protei 98.5 2.6E-06 5.6E-11 86.3 14.9 110 271-380 144-253 (262)
187 PF13512 TPR_18: Tetratricopep 98.5 3.6E-06 7.8E-11 76.9 14.4 86 127-212 9-99 (142)
188 COG3898 Uncharacterized membra 98.5 0.00035 7.5E-09 73.2 30.4 280 112-405 102-392 (531)
189 KOG4648 Uncharacterized conser 98.5 5.5E-08 1.2E-12 98.6 3.0 239 131-413 100-338 (536)
190 KOG0985 Vesicle coat protein c 98.5 0.0069 1.5E-07 71.0 45.1 144 501-678 1103-1246(1666)
191 PF13512 TPR_18: Tetratricopep 98.5 3.7E-06 8E-11 76.9 14.1 112 651-764 9-136 (142)
192 PRK15331 chaperone protein Sic 98.5 1.8E-06 3.8E-11 80.7 12.1 109 155-268 30-138 (165)
193 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 5.4E-06 1.2E-10 91.2 17.0 119 136-261 177-295 (395)
194 KOG1258 mRNA processing protei 98.4 0.0066 1.4E-07 68.2 41.0 188 497-704 292-488 (577)
195 KOG3616 Selective LIM binding 98.4 0.0082 1.8E-07 67.8 50.3 225 201-453 665-910 (1636)
196 PF12688 TPR_5: Tetratrico pep 98.4 7E-06 1.5E-10 74.1 13.5 99 426-564 2-103 (120)
197 PF12688 TPR_5: Tetratrico pep 98.4 5.7E-06 1.2E-10 74.7 12.4 99 306-404 2-103 (120)
198 KOG2796 Uncharacterized conser 98.3 0.00011 2.5E-09 72.6 21.0 255 376-701 69-333 (366)
199 PF14559 TPR_19: Tetratricopep 98.3 1.8E-06 4E-11 70.3 7.0 56 140-195 3-58 (68)
200 KOG0985 Vesicle coat protein c 98.3 0.02 4.2E-07 67.4 48.4 255 134-454 1054-1308(1666)
201 KOG4234 TPR repeat-containing 98.3 9.3E-06 2E-10 76.7 11.7 98 134-232 101-203 (271)
202 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.9E-05 4E-10 87.1 16.1 118 170-294 177-294 (395)
203 KOG4648 Uncharacterized conser 98.3 1.3E-06 2.9E-11 88.8 6.5 229 106-378 109-337 (536)
204 PF10345 Cohesin_load: Cohesin 98.3 0.027 5.7E-07 68.0 47.8 479 250-755 37-605 (608)
205 PF14559 TPR_19: Tetratricopep 98.3 2.5E-06 5.4E-11 69.6 7.0 65 173-238 2-66 (68)
206 PF13371 TPR_9: Tetratricopept 98.2 6.2E-06 1.3E-10 68.3 8.7 62 171-233 4-65 (73)
207 PF07079 DUF1347: Protein of u 98.2 0.014 3.1E-07 63.0 42.3 121 106-226 18-157 (549)
208 PF13424 TPR_12: Tetratricopep 98.2 6.1E-06 1.3E-10 69.4 8.2 69 689-757 3-76 (78)
209 KOG4234 TPR repeat-containing 98.2 2.5E-05 5.4E-10 73.9 12.5 113 165-280 98-214 (271)
210 COG4700 Uncharacterized protei 98.2 0.00013 2.8E-09 68.4 16.9 140 109-257 75-216 (251)
211 PF13371 TPR_9: Tetratricopept 98.2 9.9E-06 2.1E-10 67.1 8.6 61 135-195 2-62 (73)
212 KOG1586 Protein required for f 98.1 0.00083 1.8E-08 65.6 22.0 194 514-764 26-232 (288)
213 KOG4555 TPR repeat-containing 98.1 0.00013 2.7E-09 64.1 14.6 99 131-229 46-147 (175)
214 COG4700 Uncharacterized protei 98.1 0.00057 1.2E-08 64.2 19.9 147 552-718 72-220 (251)
215 KOG2796 Uncharacterized conser 98.1 0.0012 2.5E-08 65.7 22.9 34 38-71 67-100 (366)
216 PF13424 TPR_12: Tetratricopep 98.1 7.8E-06 1.7E-10 68.8 5.9 74 648-721 1-76 (78)
217 PF10345 Cohesin_load: Cohesin 98.0 0.073 1.6E-06 64.3 50.5 414 287-760 40-567 (608)
218 KOG4507 Uncharacterized conser 98.0 0.00026 5.7E-09 77.6 17.4 118 116-234 201-320 (886)
219 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.042 9.1E-07 59.2 40.8 288 18-333 20-361 (660)
220 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 3E-05 6.5E-10 84.6 9.8 69 123-191 70-141 (453)
221 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.042 9.2E-07 59.2 39.8 147 116-264 30-191 (660)
222 PF07079 DUF1347: Protein of u 97.9 0.05 1.1E-06 58.9 38.9 145 307-453 8-156 (549)
223 KOG2396 HAT (Half-A-TPR) repea 97.9 0.062 1.3E-06 59.1 45.0 96 146-242 89-185 (568)
224 PF06552 TOM20_plant: Plant sp 97.9 0.00011 2.4E-09 69.4 10.7 66 109-174 6-81 (186)
225 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 5.9E-05 1.3E-09 82.3 9.9 71 157-227 70-142 (453)
226 PF10300 DUF3808: Protein of u 97.9 0.043 9.4E-07 63.4 33.6 168 307-529 190-374 (468)
227 PF10300 DUF3808: Protein of u 97.8 0.018 4E-07 66.4 30.2 194 556-758 177-378 (468)
228 KOG4555 TPR repeat-containing 97.8 0.00051 1.1E-08 60.4 12.4 97 657-758 48-146 (175)
229 KOG4507 Uncharacterized conser 97.7 0.0051 1.1E-07 67.9 21.9 118 150-270 201-319 (886)
230 PF06552 TOM20_plant: Plant sp 97.7 0.00029 6.2E-09 66.7 11.0 96 144-240 7-123 (186)
231 PF05843 Suf: Suppressor of fo 97.7 0.00064 1.4E-08 72.9 15.3 135 130-268 3-141 (280)
232 KOG1550 Extracellular protein 97.7 0.0083 1.8E-07 71.0 26.0 279 320-682 227-539 (552)
233 KOG2610 Uncharacterized conser 97.7 0.0036 7.9E-08 64.4 19.1 173 540-726 107-282 (491)
234 KOG1550 Extracellular protein 97.7 0.013 2.8E-07 69.4 26.6 283 109-408 227-541 (552)
235 KOG2396 HAT (Half-A-TPR) repea 97.7 0.14 3.1E-06 56.3 40.0 88 112-200 89-177 (568)
236 KOG1586 Protein required for f 97.7 0.03 6.5E-07 55.2 23.6 100 503-602 114-227 (288)
237 PF05843 Suf: Suppressor of fo 97.7 0.0017 3.6E-08 69.7 16.9 128 632-764 15-144 (280)
238 KOG4642 Chaperone-dependent E3 97.6 0.00022 4.8E-09 69.8 8.3 86 107-192 23-108 (284)
239 PF04184 ST7: ST7 protein; In 97.6 0.0033 7.1E-08 69.0 17.8 165 107-273 181-385 (539)
240 KOG4642 Chaperone-dependent E3 97.6 0.00015 3.2E-09 71.0 6.9 93 167-263 15-107 (284)
241 KOG1585 Protein required for f 97.6 0.016 3.5E-07 57.4 20.5 54 350-403 39-98 (308)
242 PF13428 TPR_14: Tetratricopep 97.6 0.0002 4.2E-09 52.1 5.5 43 128-170 1-43 (44)
243 PF04184 ST7: ST7 protein; In 97.5 0.0052 1.1E-07 67.4 18.5 191 541-762 173-381 (539)
244 KOG2610 Uncharacterized conser 97.5 0.0098 2.1E-07 61.4 19.2 164 275-452 110-274 (491)
245 KOG1585 Protein required for f 97.5 0.022 4.7E-07 56.5 20.2 209 306-561 32-252 (308)
246 PF13281 DUF4071: Domain of un 97.5 0.014 3.1E-07 63.5 20.8 180 536-720 141-334 (374)
247 PF08631 SPO22: Meiosis protei 97.5 0.15 3.3E-06 54.7 28.7 171 233-404 86-274 (278)
248 PF13428 TPR_14: Tetratricopep 97.5 0.00031 6.7E-09 51.0 5.5 42 198-239 2-43 (44)
249 KOG0376 Serine-threonine phosp 97.4 0.00025 5.3E-09 77.2 5.7 100 106-206 16-115 (476)
250 KOG0890 Protein kinase of the 97.3 1.2 2.6E-05 58.6 43.0 329 45-406 1388-1732(2382)
251 KOG2062 26S proteasome regulat 97.3 0.53 1.2E-05 54.3 42.8 192 21-225 38-238 (929)
252 COG2909 MalT ATP-dependent tra 97.3 0.31 6.6E-06 57.9 29.9 239 501-752 414-684 (894)
253 KOG0530 Protein farnesyltransf 97.3 0.073 1.6E-06 53.5 21.4 183 112-295 61-251 (318)
254 KOG2041 WD40 repeat protein [G 97.3 0.3 6.5E-06 55.6 28.5 128 250-401 750-877 (1189)
255 PF02259 FAT: FAT domain; Int 97.3 0.069 1.5E-06 60.1 24.8 125 265-389 143-305 (352)
256 PF08631 SPO22: Meiosis protei 97.3 0.15 3.3E-06 54.7 25.9 237 436-719 4-274 (278)
257 KOG0545 Aryl-hydrocarbon recep 97.2 0.0027 5.8E-08 62.5 10.5 102 129-231 179-298 (329)
258 KOG2041 WD40 repeat protein [G 97.2 0.67 1.4E-05 53.0 30.9 239 267-596 691-936 (1189)
259 COG3118 Thioredoxin domain-con 97.2 0.042 9E-07 56.7 19.2 151 128-282 134-286 (304)
260 KOG0890 Protein kinase of the 97.2 1.2 2.6E-05 58.7 35.6 122 651-779 1669-1807(2382)
261 PF13431 TPR_17: Tetratricopep 97.2 0.00032 7E-09 47.3 2.7 32 117-148 2-33 (34)
262 PF02259 FAT: FAT domain; Int 97.2 0.32 6.9E-06 54.6 28.7 158 648-808 142-337 (352)
263 PF13431 TPR_17: Tetratricopep 97.2 0.00035 7.5E-09 47.2 2.7 32 641-672 2-33 (34)
264 PRK13184 pknD serine/threonine 97.2 0.56 1.2E-05 58.0 31.7 186 516-719 670-868 (932)
265 KOG0376 Serine-threonine phosp 97.1 0.00071 1.5E-08 73.7 6.2 109 133-242 9-117 (476)
266 COG3118 Thioredoxin domain-con 97.1 0.051 1.1E-06 56.1 18.8 163 536-715 134-296 (304)
267 COG2909 MalT ATP-dependent tra 97.1 1 2.3E-05 53.6 33.4 278 268-600 347-648 (894)
268 PF07719 TPR_2: Tetratricopept 97.1 0.0013 2.9E-08 44.6 5.1 33 728-760 2-34 (34)
269 KOG0545 Aryl-hydrocarbon recep 97.1 0.0069 1.5E-07 59.7 11.7 121 426-571 179-299 (329)
270 PF04910 Tcf25: Transcriptiona 97.1 0.018 3.9E-07 63.7 16.5 175 25-229 25-225 (360)
271 PF13281 DUF4071: Domain of un 97.0 0.12 2.7E-06 56.4 21.7 182 164-375 143-338 (374)
272 COG2976 Uncharacterized protei 96.9 0.022 4.8E-07 54.8 13.6 100 308-408 92-191 (207)
273 KOG0551 Hsp90 co-chaperone CNS 96.9 0.082 1.8E-06 55.0 18.3 82 690-771 80-163 (390)
274 COG2976 Uncharacterized protei 96.9 0.044 9.6E-07 52.8 15.3 120 252-375 70-192 (207)
275 PF00515 TPR_1: Tetratricopept 96.9 0.0018 3.8E-08 44.0 4.5 32 728-759 2-33 (34)
276 PF00515 TPR_1: Tetratricopept 96.9 0.0018 4E-08 43.9 4.2 32 129-160 2-33 (34)
277 KOG0530 Protein farnesyltransf 96.8 0.2 4.3E-06 50.6 19.5 236 355-652 56-303 (318)
278 PF07719 TPR_2: Tetratricopept 96.8 0.0027 5.8E-08 43.0 4.9 31 130-160 3-33 (34)
279 KOG0128 RNA-binding protein SA 96.8 1.9 4.1E-05 51.0 34.5 236 501-749 311-556 (881)
280 KOG0551 Hsp90 co-chaperone CNS 96.7 0.044 9.5E-07 57.0 14.7 98 130-228 83-184 (390)
281 PRK13184 pknD serine/threonine 96.7 1.1 2.4E-05 55.5 29.2 141 44-195 479-624 (932)
282 PRK15180 Vi polysaccharide bio 96.7 1.4 3E-05 48.3 29.8 127 107-234 302-428 (831)
283 KOG1464 COP9 signalosome, subu 96.6 0.96 2.1E-05 45.8 23.8 202 355-602 40-263 (440)
284 PF04781 DUF627: Protein of un 96.6 0.015 3.2E-07 50.7 8.6 106 46-157 2-107 (111)
285 PF08424 NRDE-2: NRDE-2, neces 96.5 0.17 3.6E-06 55.6 18.9 83 179-262 48-130 (321)
286 PF04910 Tcf25: Transcriptiona 96.5 0.093 2E-06 58.1 16.5 148 119-266 31-225 (360)
287 COG0790 FOG: TPR repeat, SEL1 96.4 0.46 9.9E-06 51.7 21.3 172 514-705 53-236 (292)
288 PF08424 NRDE-2: NRDE-2, neces 96.3 0.18 3.8E-06 55.4 17.4 113 219-334 7-131 (321)
289 PF03704 BTAD: Bacterial trans 96.2 0.21 4.5E-06 47.7 15.7 28 428-455 9-36 (146)
290 KOG1308 Hsp70-interacting prot 96.2 0.0025 5.5E-08 66.2 2.4 83 110-192 130-212 (377)
291 KOG2422 Uncharacterized conser 96.2 0.41 8.9E-06 53.8 18.9 157 109-266 253-451 (665)
292 KOG1308 Hsp70-interacting prot 96.2 0.0062 1.3E-07 63.4 4.8 94 134-228 120-213 (377)
293 PF03704 BTAD: Bacterial trans 96.1 0.098 2.1E-06 50.0 13.0 60 164-224 64-123 (146)
294 PF13174 TPR_6: Tetratricopept 96.0 0.0099 2.1E-07 39.8 3.9 30 730-759 3-32 (33)
295 PF13176 TPR_7: Tetratricopept 96.0 0.012 2.6E-07 40.4 4.3 29 693-721 1-29 (36)
296 COG0790 FOG: TPR repeat, SEL1 96.0 1.1 2.4E-05 48.7 22.0 167 107-282 54-236 (292)
297 PF13174 TPR_6: Tetratricopept 96.0 0.016 3.4E-07 38.8 4.7 32 692-723 1-32 (33)
298 KOG3783 Uncharacterized conser 95.9 2.3 4.9E-05 48.0 23.0 98 111-208 250-349 (546)
299 PF13181 TPR_8: Tetratricopept 95.9 0.015 3.3E-07 39.3 4.2 31 199-229 3-33 (34)
300 PF13181 TPR_8: Tetratricopept 95.9 0.015 3.2E-07 39.3 4.2 30 729-758 3-32 (34)
301 KOG3364 Membrane protein invol 95.7 0.071 1.5E-06 47.9 8.7 75 690-764 31-108 (149)
302 PF09613 HrpB1_HrpK: Bacterial 95.6 0.16 3.6E-06 47.8 11.3 85 129-214 11-95 (160)
303 COG5159 RPN6 26S proteasome re 95.5 3.1 6.6E-05 42.7 20.4 103 427-566 127-236 (421)
304 KOG1463 26S proteasome regulat 95.5 4.2 9.1E-05 43.0 21.5 170 235-407 132-318 (411)
305 KOG1464 COP9 signalosome, subu 95.4 1.9 4.1E-05 43.7 18.1 214 515-741 40-286 (440)
306 PF09986 DUF2225: Uncharacteri 95.3 0.16 3.4E-06 51.6 11.2 96 665-760 90-198 (214)
307 PF14853 Fis1_TPR_C: Fis1 C-te 95.3 0.071 1.5E-06 40.0 6.3 37 728-764 2-38 (53)
308 COG4649 Uncharacterized protei 95.2 0.75 1.6E-05 43.4 13.9 136 632-770 72-209 (221)
309 KOG3783 Uncharacterized conser 95.0 8.1 0.00018 43.8 29.3 238 497-759 262-523 (546)
310 PF14561 TPR_20: Tetratricopep 95.0 0.26 5.5E-06 42.2 9.8 65 148-212 8-73 (90)
311 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.14 3.1E-06 38.4 6.4 40 130-169 3-42 (53)
312 PF04781 DUF627: Protein of un 94.7 0.34 7.3E-06 42.4 9.6 45 253-297 63-107 (111)
313 PF09613 HrpB1_HrpK: Bacterial 94.7 0.43 9.4E-06 45.1 11.0 99 84-194 11-109 (160)
314 KOG0128 RNA-binding protein SA 94.4 15 0.00032 43.9 37.2 117 108-226 93-219 (881)
315 KOG3364 Membrane protein invol 94.3 0.63 1.4E-05 42.1 10.6 78 161-238 31-112 (149)
316 PF08492 SRP72: SRP72 RNA-bind 94.2 0.0012 2.5E-08 49.9 -5.5 29 882-910 26-59 (59)
317 KOG3824 Huntingtin interacting 94.1 0.24 5.3E-06 50.8 8.6 62 108-169 130-191 (472)
318 PF14561 TPR_20: Tetratricopep 94.1 0.37 8.1E-06 41.2 8.6 74 113-186 7-82 (90)
319 COG4649 Uncharacterized protei 94.1 4.8 0.0001 38.3 16.1 125 135-262 65-195 (221)
320 KOG1144 Translation initiation 94.0 1.6 3.4E-05 50.8 15.6 8 865-872 247-254 (1064)
321 PF12968 DUF3856: Domain of Un 94.0 2.1 4.6E-05 37.7 12.8 97 660-756 17-129 (144)
322 PF13176 TPR_7: Tetratricopept 93.9 0.11 2.4E-06 35.6 4.1 23 131-153 2-24 (36)
323 PF10602 RPN7: 26S proteasome 93.7 0.56 1.2E-05 46.2 10.3 105 652-758 36-144 (177)
324 KOG2062 26S proteasome regulat 93.7 19 0.0004 42.4 33.8 252 514-808 369-634 (929)
325 PRK10941 hypothetical protein; 93.7 0.52 1.1E-05 49.6 10.6 62 134-195 187-248 (269)
326 TIGR02561 HrpB1_HrpK type III 93.6 0.73 1.6E-05 42.7 10.0 82 131-213 13-94 (153)
327 PF10602 RPN7: 26S proteasome 93.6 0.37 7.9E-06 47.5 8.9 65 269-333 37-101 (177)
328 PRK10941 hypothetical protein; 93.3 0.81 1.7E-05 48.2 11.3 74 165-239 184-257 (269)
329 KOG2422 Uncharacterized conser 93.1 20 0.00043 41.1 21.7 155 516-683 252-450 (665)
330 KOG3824 Huntingtin interacting 93.1 0.31 6.7E-06 50.1 7.4 69 169-238 123-191 (472)
331 PF12968 DUF3856: Domain of Un 93.1 3.5 7.6E-05 36.4 12.5 65 89-155 6-82 (144)
332 PRK15180 Vi polysaccharide bio 92.9 18 0.0004 40.1 31.0 120 250-375 305-424 (831)
333 KOG0163 Myosin class VI heavy 92.5 18 0.00039 42.3 20.7 24 656-683 750-773 (1259)
334 PRK12798 chemotaxis protein; R 92.5 20 0.00044 39.6 21.0 176 569-759 111-289 (421)
335 smart00028 TPR Tetratricopepti 92.5 0.21 4.6E-06 32.4 4.0 31 130-160 3-33 (34)
336 smart00028 TPR Tetratricopepti 92.4 0.22 4.8E-06 32.3 4.0 28 693-720 3-30 (34)
337 PF09986 DUF2225: Uncharacteri 92.1 1.9 4.1E-05 43.9 11.8 105 632-737 91-210 (214)
338 KOG1463 26S proteasome regulat 92.1 19 0.00041 38.3 25.9 110 503-612 129-253 (411)
339 KOG3807 Predicted membrane pro 92.0 18 0.00039 38.1 19.6 63 341-405 183-245 (556)
340 KOG1538 Uncharacterized conser 92.0 10 0.00022 43.5 17.8 94 350-451 564-658 (1081)
341 KOG1144 Translation initiation 91.7 1.3 2.9E-05 51.4 10.9 38 824-861 214-251 (1064)
342 COG1747 Uncharacterized N-term 91.7 27 0.00058 39.4 22.0 232 499-764 63-296 (711)
343 COG5191 Uncharacterized conser 91.6 0.41 9E-06 49.4 6.3 90 151-241 96-186 (435)
344 TIGR02561 HrpB1_HrpK type III 91.6 7.5 0.00016 36.3 13.7 82 164-246 12-93 (153)
345 COG3914 Spy Predicted O-linked 91.6 4.2 9.2E-05 46.4 14.5 128 112-240 49-185 (620)
346 KOG4814 Uncharacterized conser 91.5 32 0.0007 39.8 23.3 278 503-802 355-658 (872)
347 PF12862 Apc5: Anaphase-promot 91.4 1.5 3.4E-05 37.9 9.0 65 663-727 9-77 (94)
348 PF04190 DUF410: Protein of un 91.3 22 0.00048 37.6 20.4 155 106-281 69-241 (260)
349 KOG1538 Uncharacterized conser 90.6 20 0.00043 41.4 18.3 180 132-332 636-831 (1081)
350 KOG1310 WD40 repeat protein [G 90.5 0.7 1.5E-05 51.2 7.1 89 140-229 386-477 (758)
351 KOG3807 Predicted membrane pro 90.4 26 0.00057 36.9 18.9 193 201-411 188-397 (556)
352 PF04190 DUF410: Protein of un 90.3 27 0.00058 36.9 23.2 140 499-665 87-241 (260)
353 KOG0529 Protein geranylgeranyl 90.2 26 0.00057 38.5 18.3 163 111-273 46-234 (421)
354 COG3914 Spy Predicted O-linked 90.2 11 0.00024 43.1 16.1 134 145-282 48-190 (620)
355 COG4976 Predicted methyltransf 90.1 0.46 9.9E-06 47.0 4.8 58 172-230 5-62 (287)
356 COG5159 RPN6 26S proteasome re 89.9 26 0.00057 36.3 26.2 97 309-405 129-235 (421)
357 PF13374 TPR_10: Tetratricopep 89.9 0.7 1.5E-05 32.6 4.7 30 692-721 3-32 (42)
358 PF10579 Rapsyn_N: Rapsyn N-te 89.6 2.3 5.1E-05 34.6 7.6 59 694-752 9-68 (80)
359 PRK11619 lytic murein transgly 89.3 60 0.0013 39.4 40.2 29 501-529 345-373 (644)
360 PF04053 Coatomer_WDAD: Coatom 88.7 10 0.00022 43.4 15.1 131 136-295 269-400 (443)
361 COG4976 Predicted methyltransf 88.7 0.83 1.8E-05 45.3 5.4 59 137-195 4-62 (287)
362 COG5191 Uncharacterized conser 88.5 0.74 1.6E-05 47.6 5.2 85 116-201 95-180 (435)
363 KOG1310 WD40 repeat protein [G 87.9 2.7 5.8E-05 46.9 9.2 89 107-195 387-478 (758)
364 KOG1839 Uncharacterized protei 87.8 4.9 0.00011 50.4 12.4 150 256-405 960-1128(1236)
365 PF12854 PPR_1: PPR repeat 87.4 1.2 2.7E-05 29.9 4.1 29 38-66 5-33 (34)
366 KOG2581 26S proteasome regulat 87.3 50 0.0011 36.2 22.8 132 632-765 140-285 (493)
367 PRK11619 lytic murein transgly 86.8 83 0.0018 38.2 48.0 316 41-404 34-374 (644)
368 KOG1832 HIV-1 Vpr-binding prot 86.8 0.3 6.5E-06 57.1 1.4 11 798-808 1258-1268(1516)
369 KOG2581 26S proteasome regulat 86.7 54 0.0012 36.0 18.8 105 305-409 169-280 (493)
370 PF15015 NYD-SP12_N: Spermatog 86.6 4 8.7E-05 44.3 9.3 108 430-562 181-288 (569)
371 KOG1839 Uncharacterized protei 86.5 8.5 0.00018 48.4 13.3 174 345-562 935-1125(1236)
372 PF10516 SHNi-TPR: SHNi-TPR; 86.3 1.5 3.3E-05 30.3 4.0 29 692-720 2-30 (38)
373 PF13374 TPR_10: Tetratricopep 85.9 1.6 3.5E-05 30.6 4.5 29 728-756 3-31 (42)
374 PF04053 Coatomer_WDAD: Coatom 85.3 31 0.00067 39.6 16.5 105 170-294 269-373 (443)
375 PF12862 Apc5: Anaphase-promot 85.0 6.2 0.00014 34.1 8.5 55 138-192 8-71 (94)
376 PRK12798 chemotaxis protein; R 84.9 70 0.0015 35.6 22.0 151 250-402 164-321 (421)
377 PF11207 DUF2989: Protein of u 84.7 7.3 0.00016 38.5 9.5 77 667-748 121-199 (203)
378 PF11817 Foie-gras_1: Foie gra 84.7 43 0.00094 35.1 16.3 88 667-754 153-245 (247)
379 KOG2114 Vacuolar assembly/sort 84.6 1E+02 0.0022 37.3 31.3 112 276-398 342-453 (933)
380 COG2912 Uncharacterized conser 84.4 5.3 0.00012 41.4 8.8 61 110-170 197-257 (269)
381 PF11207 DUF2989: Protein of u 84.2 6.5 0.00014 38.8 8.9 77 634-712 122-199 (203)
382 KOG1029 Endocytic adaptor prot 84.0 7.4 0.00016 45.5 10.4 13 849-861 358-370 (1118)
383 PF07721 TPR_4: Tetratricopept 83.8 1.6 3.4E-05 27.2 3.1 22 693-714 3-24 (26)
384 COG3629 DnrI DNA-binding trans 83.7 21 0.00046 37.7 13.1 61 130-190 155-215 (280)
385 PF10579 Rapsyn_N: Rapsyn N-te 83.6 10 0.00022 31.1 8.2 57 201-257 10-66 (80)
386 PF15015 NYD-SP12_N: Spermatog 83.2 21 0.00046 39.1 12.7 88 166-256 180-284 (569)
387 COG3629 DnrI DNA-binding trans 82.9 7.4 0.00016 41.0 9.3 66 340-405 151-216 (280)
388 PF00244 14-3-3: 14-3-3 protei 82.8 35 0.00077 35.4 14.4 28 540-567 5-32 (236)
389 PF07720 TPR_3: Tetratricopept 82.1 4.5 9.8E-05 27.6 4.9 18 167-184 6-23 (36)
390 KOG2114 Vacuolar assembly/sort 81.8 1.3E+02 0.0029 36.5 28.0 214 44-302 372-595 (933)
391 PF07720 TPR_3: Tetratricopept 81.7 4.9 0.00011 27.4 5.0 20 730-749 4-23 (36)
392 PF12739 TRAPPC-Trs85: ER-Golg 81.4 44 0.00096 38.2 15.9 173 43-228 211-401 (414)
393 PF07721 TPR_4: Tetratricopept 81.2 2.7 5.9E-05 26.1 3.4 25 41-65 2-26 (26)
394 KOG0529 Protein geranylgeranyl 80.5 57 0.0012 36.1 15.0 135 103-238 84-236 (421)
395 PLN03237 DNA topoisomerase 2; 80.2 5 0.00011 51.7 8.2 31 984-1014 1259-1293(1465)
396 PF13041 PPR_2: PPR repeat fam 78.7 8.6 0.00019 28.4 6.2 43 691-734 3-45 (50)
397 PF11817 Foie-gras_1: Foie gra 78.6 65 0.0014 33.8 15.0 60 343-402 179-244 (247)
398 PF13041 PPR_2: PPR repeat fam 77.7 5.2 0.00011 29.6 4.7 45 570-614 3-47 (50)
399 COG2912 Uncharacterized conser 77.4 16 0.00034 38.1 9.4 65 170-235 189-253 (269)
400 PF00244 14-3-3: 14-3-3 protei 77.3 81 0.0018 32.8 14.9 175 505-682 4-199 (236)
401 PF12854 PPR_1: PPR repeat 77.0 3.8 8.2E-05 27.5 3.4 27 651-677 6-32 (34)
402 PTZ00266 NIMA-related protein 76.7 33 0.00071 43.4 13.7 6 995-1000 603-608 (1021)
403 COG1747 Uncharacterized N-term 76.6 1.4E+02 0.0031 33.9 26.7 98 158-262 62-159 (711)
404 KOG0163 Myosin class VI heavy 75.9 1.8E+02 0.0039 34.7 20.6 25 639-663 763-787 (1259)
405 PF10255 Paf67: RNA polymerase 75.8 4.6 9.9E-05 45.0 5.5 63 163-225 123-192 (404)
406 PF04097 Nic96: Nup93/Nic96; 75.6 2E+02 0.0042 35.0 21.2 28 734-762 512-539 (613)
407 KOG3054 Uncharacterized conser 75.1 32 0.0007 34.5 10.2 18 877-894 151-168 (299)
408 KOG1029 Endocytic adaptor prot 74.8 43 0.00093 39.6 12.7 14 850-863 349-362 (1118)
409 KOG1832 HIV-1 Vpr-binding prot 74.7 2.8 6.1E-05 49.5 3.6 14 1040-1053 1488-1501(1516)
410 PF10516 SHNi-TPR: SHNi-TPR; 74.5 5.7 0.00012 27.5 3.7 29 537-565 2-30 (38)
411 KOG2412 Nuclear-export-signal 74.5 1.7E+02 0.0036 33.6 17.6 11 852-862 222-232 (591)
412 smart00299 CLH Clathrin heavy 73.9 76 0.0017 29.6 12.9 36 513-548 18-53 (140)
413 KOG3654 Uncharacterized CH dom 72.2 40 0.00087 37.5 11.2 10 990-999 513-522 (708)
414 KOG4014 Uncharacterized conser 72.2 1E+02 0.0022 30.0 15.9 100 302-407 31-143 (248)
415 KOG2561 Adaptor protein NUB1, 71.8 92 0.002 34.6 13.6 27 730-756 270-296 (568)
416 PF12739 TRAPPC-Trs85: ER-Golg 70.5 1.5E+02 0.0033 33.8 16.5 27 166-192 212-238 (414)
417 smart00386 HAT HAT (Half-A-TPR 70.3 11 0.00024 24.4 4.5 28 212-239 2-29 (33)
418 KOG4521 Nuclear pore complex, 70.1 1.8E+02 0.0039 36.7 16.8 192 197-407 920-1134(1480)
419 KOG0687 26S proteasome regulat 69.5 99 0.0022 33.0 12.8 100 128-227 104-211 (393)
420 TIGR03504 FimV_Cterm FimV C-te 68.7 10 0.00022 27.3 4.1 26 44-69 3-28 (44)
421 TIGR03504 FimV_Cterm FimV C-te 68.6 6.6 0.00014 28.2 3.1 25 695-719 3-27 (44)
422 KOG2393 Transcription initiati 68.0 7.2 0.00016 43.9 4.7 16 934-949 270-285 (555)
423 PF10446 DUF2457: Protein of u 67.2 3.6 7.8E-05 45.1 2.2 12 997-1008 106-117 (458)
424 PF04097 Nic96: Nup93/Nic96; 66.4 2.2E+02 0.0049 34.5 17.4 159 168-332 264-441 (613)
425 PF10255 Paf67: RNA polymerase 66.3 31 0.00068 38.6 9.3 66 44-121 126-191 (404)
426 KOG2063 Vacuolar assembly/sort 66.3 3.2E+02 0.0068 34.2 18.2 117 503-620 505-640 (877)
427 KOG1150 Predicted molecular ch 65.8 1.4E+02 0.003 29.3 13.9 28 877-906 195-222 (250)
428 COG4941 Predicted RNA polymera 65.8 2E+02 0.0043 31.0 16.6 75 502-576 329-405 (415)
429 COG4455 ImpE Protein of avirul 65.2 45 0.00098 33.4 8.9 59 137-195 10-68 (273)
430 KOG0066 eIF2-interacting prote 65.2 4.9 0.00011 43.9 2.7 21 988-1008 90-110 (807)
431 PF07946 DUF1682: Protein of u 65.1 60 0.0013 35.6 11.2 14 794-807 235-248 (321)
432 COG3947 Response regulator con 64.5 22 0.00047 37.1 6.9 60 345-404 282-341 (361)
433 KOG1920 IkappaB kinase complex 64.3 4E+02 0.0087 34.1 24.9 23 506-528 1003-1025(1265)
434 KOG4279 Serine/threonine prote 64.2 92 0.002 37.0 12.4 125 536-666 201-334 (1226)
435 smart00386 HAT HAT (Half-A-TPR 63.8 17 0.00037 23.4 4.4 27 143-169 2-28 (33)
436 COG3947 Response regulator con 63.7 19 0.00041 37.5 6.4 58 539-596 282-339 (361)
437 KOG2063 Vacuolar assembly/sort 63.6 3.8E+02 0.0083 33.5 21.9 21 47-67 353-373 (877)
438 KOG0686 COP9 signalosome, subu 63.6 35 0.00077 37.4 8.6 100 270-369 152-256 (466)
439 KOG3080 Nucleolar protein-like 63.0 1.7E+02 0.0036 30.7 12.7 14 848-861 193-206 (328)
440 COG5187 RPN7 26S proteasome re 62.3 2.1E+02 0.0045 30.1 14.4 108 501-608 114-230 (412)
441 KOG0686 COP9 signalosome, subu 62.1 28 0.00062 38.1 7.6 97 306-403 151-256 (466)
442 PF01535 PPR: PPR repeat; Int 61.4 9.1 0.0002 24.5 2.6 28 42-69 2-29 (31)
443 PF06936 Selenoprotein_S: Sele 61.0 65 0.0014 31.9 9.3 14 898-911 116-129 (190)
444 cd00280 TRFH Telomeric Repeat 59.1 1.2E+02 0.0026 29.6 10.3 127 40-171 13-153 (200)
445 PF11214 Med2: Mediator comple 58.9 1.2E+02 0.0027 26.4 10.4 14 831-844 59-72 (105)
446 PF10373 EST1_DNA_bind: Est1 D 58.8 26 0.00056 37.5 7.2 62 113-174 1-62 (278)
447 COG5187 RPN7 26S proteasome re 58.7 2.4E+02 0.0053 29.7 14.1 60 346-405 79-144 (412)
448 smart00299 CLH Clathrin heavy 58.5 1.6E+02 0.0034 27.4 13.5 48 352-400 17-64 (140)
449 KOG4364 Chromatin assembly fac 58.4 1.7E+02 0.0037 34.3 13.1 12 1013-1024 502-513 (811)
450 smart00101 14_3_3 14-3-3 homol 58.1 2.4E+02 0.0052 29.4 18.8 56 540-595 5-64 (244)
451 PF14863 Alkyl_sulf_dimr: Alky 58.0 32 0.00069 32.3 6.4 52 126-177 68-119 (141)
452 KOG3677 RNA polymerase I-assoc 57.8 1.3E+02 0.0029 33.2 11.6 104 307-410 237-341 (525)
453 PF10373 EST1_DNA_bind: Est1 D 57.7 34 0.00073 36.6 7.8 61 181-242 1-61 (278)
454 PF09670 Cas_Cas02710: CRISPR- 57.3 1.9E+02 0.0041 32.6 13.7 62 504-565 133-198 (379)
455 COG5536 BET4 Protein prenyltra 57.0 1.4E+02 0.0031 31.1 11.1 164 111-275 49-234 (328)
456 KOG4422 Uncharacterized conser 56.6 3.3E+02 0.0071 30.5 39.8 71 501-571 521-596 (625)
457 PF13812 PPR_3: Pentatricopept 56.5 11 0.00023 24.9 2.3 29 41-69 2-30 (34)
458 COG4455 ImpE Protein of avirul 56.5 1.4E+02 0.0031 30.0 10.6 57 353-409 12-68 (273)
459 cd02680 MIT_calpain7_2 MIT: do 55.7 23 0.00051 28.9 4.5 20 703-722 18-37 (75)
460 KOG0546 HSP90 co-chaperone CPR 55.6 20 0.00043 38.5 5.2 71 342-412 275-345 (372)
461 PF01535 PPR: PPR repeat; Int 55.5 15 0.00032 23.5 2.8 26 655-680 3-28 (31)
462 PF09670 Cas_Cas02710: CRISPR- 54.8 1.5E+02 0.0032 33.4 12.3 61 166-226 135-198 (379)
463 KOG0546 HSP90 co-chaperone CPR 54.6 14 0.0003 39.7 3.8 129 427-579 224-352 (372)
464 TIGR00756 PPR pentatricopeptid 54.4 13 0.00027 24.5 2.5 28 42-69 2-29 (35)
465 KOG0276 Vesicle coat complex C 53.0 1.7E+02 0.0037 34.1 12.0 28 127-154 665-692 (794)
466 KOG4279 Serine/threonine prote 53.0 1.2E+02 0.0026 36.1 10.9 53 176-228 257-318 (1226)
467 KOG0292 Vesicle coat complex C 52.9 5.3E+02 0.012 31.9 18.1 72 242-332 654-725 (1202)
468 PF04090 RNA_pol_I_TF: RNA pol 52.3 2E+02 0.0044 28.8 11.2 36 668-703 155-190 (199)
469 KOG2141 Protein involved in hi 51.4 9.4 0.0002 44.6 2.1 12 1040-1051 266-277 (822)
470 KOG2758 Translation initiation 50.5 3.5E+02 0.0075 29.0 17.8 78 148-225 115-195 (432)
471 KOG4014 Uncharacterized conser 49.6 2.6E+02 0.0057 27.3 15.5 185 198-405 35-233 (248)
472 KOG2412 Nuclear-export-signal 48.5 1.2E+02 0.0026 34.7 9.9 10 852-861 232-241 (591)
473 TIGR00756 PPR pentatricopeptid 48.1 28 0.00061 22.7 3.4 26 655-680 3-28 (35)
474 KOG0276 Vesicle coat complex C 47.6 2.8E+02 0.0061 32.5 12.5 101 278-402 647-747 (794)
475 COG5116 RPN2 26S proteasome re 47.3 5.2E+02 0.011 30.1 29.3 194 21-228 38-239 (926)
476 PF14863 Alkyl_sulf_dimr: Alky 46.4 59 0.0013 30.5 6.3 51 161-212 69-119 (141)
477 PF12921 ATP13: Mitochondrial 46.4 2.1E+02 0.0045 26.3 9.8 80 654-733 4-94 (126)
478 KOG2357 Uncharacterized conser 45.6 1.2E+02 0.0027 33.4 9.1 10 605-614 171-180 (440)
479 PF13812 PPR_3: Pentatricopept 45.5 38 0.00081 22.1 3.7 27 654-680 3-29 (34)
480 KOG4521 Nuclear pore complex, 45.2 7.8E+02 0.017 31.6 17.1 180 376-598 920-1131(1480)
481 KOG0889 Histone acetyltransfer 45.2 1.3E+03 0.028 34.0 32.6 100 133-241 2487-2595(3550)
482 KOG2357 Uncharacterized conser 44.7 1.3E+02 0.0028 33.2 9.1 17 793-809 286-302 (440)
483 KOG2561 Adaptor protein NUB1, 44.5 1.1E+02 0.0025 33.9 8.7 122 43-191 166-296 (568)
484 PF13025 DUF3886: Protein of u 44.3 77 0.0017 25.4 5.5 16 858-873 26-41 (70)
485 cd02682 MIT_AAA_Arch MIT: doma 44.1 1.4E+02 0.003 24.5 7.1 57 689-774 4-60 (75)
486 PF08311 Mad3_BUB1_I: Mad3/BUB 43.4 2.6E+02 0.0057 25.6 15.0 47 669-718 80-126 (126)
487 PRK08475 F0F1 ATP synthase sub 43.1 2.9E+02 0.0063 26.8 10.8 38 821-858 50-87 (167)
488 cd02680 MIT_calpain7_2 MIT: do 43.1 45 0.00097 27.3 4.2 17 174-190 18-34 (75)
489 PF07946 DUF1682: Protein of u 43.0 1.3E+02 0.0029 32.9 9.4 12 795-806 232-243 (321)
490 PLN03086 PRLI-interacting fact 42.8 1.6E+02 0.0035 34.6 10.3 26 845-870 18-43 (567)
491 COG5536 BET4 Protein prenyltra 42.8 4.3E+02 0.0093 27.9 12.2 129 145-274 49-190 (328)
492 PF10952 DUF2753: Protein of u 42.7 1.9E+02 0.0042 26.2 8.2 68 694-761 4-88 (140)
493 TIGR03362 VI_chp_7 type VI sec 42.6 4.7E+02 0.01 28.3 15.8 58 312-369 220-277 (301)
494 PLN03083 E3 UFM1-protein ligas 42.0 16 0.00034 44.2 2.2 7 923-929 431-437 (803)
495 PF11846 DUF3366: Domain of un 41.9 1.3E+02 0.0027 30.1 8.5 47 711-760 131-177 (193)
496 PF09477 Type_III_YscG: Bacter 41.8 2.5E+02 0.0054 24.9 11.1 84 134-223 12-95 (116)
497 PF13226 DUF4034: Domain of un 41.2 2.7E+02 0.0058 29.6 10.7 111 135-246 7-148 (277)
498 KOG2038 CAATT-binding transcri 41.1 27 0.00058 41.3 3.7 124 927-1065 812-935 (988)
499 COG3107 LppC Putative lipoprot 40.7 6.4E+02 0.014 29.3 14.5 158 113-272 47-241 (604)
500 PTZ00121 MAEBL; Provisional 39.3 3.7E+02 0.008 35.1 12.8 86 818-903 1138-1223(2084)
No 1
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-112 Score=947.29 Aligned_cols=976 Identities=40% Similarity=0.645 Sum_probs=862.5
Q ss_pred CceeeeccCCCcceEEEcCCCCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHH
Q 001509 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (1065)
Q Consensus 1 ~~~~~ip~~~~~e~v~i~~~~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 80 (1065)
|+||+|||++++|||+||+++|| |+.||+.||+.+.+++++|+.+|..||++|++++++.+|+.++ ...+..|.+...
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~-~~~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGL-IDANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhh-hcccchhcchHH
Confidence 57999999999999999999999 9999999999999999999999999999999999999999998 345566888889
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 001509 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (1065)
Q Consensus 81 ~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~--~~A~~~~~~al~~~ 158 (1065)
+.+.+++.||.+|..++........++..+..|+.+|+.+-.++......++..+..++..|.. +.|...|..+++.+
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988888999999999999999999999999999999888888876 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
|+|+.++++.|++.+..|+|..|+.+|+.++.++|...+.+++++|.|++++|+.+.|+..|.++++++|.++.+++.||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001509 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1065)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1065)
.+.+...+...+..++..+.+++..+|.+|.+++.|++.|+..|+|..+..++..++..+...+..++.++++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999889999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHH
Q 001509 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (1065)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (1065)
|+|++|..+|..+++.. +..++.+++++|++|+..|++..|+.+|++++...|++.+++..||.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 99999999999999843 23358899999999999999999999999999999999999999999999886 6789
Q ss_pred HHHHHHHHHHhCCCcHH-----------------------HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 395 AQELLRKAAKIDPRDAQ-----------------------ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 451 (1065)
Q Consensus 395 A~~~~~~al~~~p~~~~-----------------------a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (1065)
|..++.+++...|.+.. +..++...+..+|+++++|+|..++..|++..|...|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999988877 3344455566699999999999999999999999999999
Q ss_pred HcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001509 452 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 531 (1065)
Q Consensus 452 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 531 (1065)
+..+......+. ......+..||+|+++..+++++.|.+.|..++..
T Consensus 479 ~~~~~~~~n~de---------------------------------~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVANKDE---------------------------------GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhcCccc---------------------------------cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 874210000000 01224678999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCC-CChHHHHh
Q 001509 532 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLS 610 (1065)
Q Consensus 532 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~~~~~~ 610 (1065)
+|.++++|+++|.+....++..+|..++..++..+..+|.+|..+|.+|+...+|..|..-|..+++.... +|+|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988875443 59999999
Q ss_pred hHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Q 001509 611 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 690 (1065)
Q Consensus 611 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 690 (1065)
|||+ |+...+...+++..+++.+++|+++|.++|..+|.|.+|.+++|++++..|++.+|+.+|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9999 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 001509 691 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 691 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
+++|+|+||||+.+|+|..|+++|+.|+++|...+++.++.+||++|+..|.+.+|..++.+|+++.|.++.+.||+|.+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 89999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001509 771 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQ-Q 849 (1065)
Q Consensus 771 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~-~ 849 (1065)
+++.+.++++...++++++..++.+|+.|+++|+.|+...+. +++++.+.+++++|+++++++..|..+++++.+ +
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~e 836 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEE 836 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998765 789999999999999999999999988776544 4
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCchh-hhhcccCCCCCccc
Q 001509 850 NRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVG 925 (1065)
Q Consensus 850 ~~~k~---e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~ 925 (1065)
.++|+ +.+++.++.++++|++||++...+...+++++.+......+.+.+-+++|+++.... |+|..+
T Consensus 837 r~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~~~~~-------- 908 (1018)
T KOG2002|consen 837 RRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKRGDDS-------- 908 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCCCCcC--------
Confidence 44444 455566667888888888887777777777777766666778888899998776554 333222
Q ss_pred ccccccccCCcccccccCc-CccccchhhhhcccCCCCCCcchhccCCCCCCCCCC-CCCCchhhhhhhh-HHHhcCCCC
Q 001509 926 HSEKRRRKGGKRRKKDKSS-RSHYETEYAEADMMDYREEPEDEDASMNYREPIGQM-NDQDDDVEENAND-RLAAAGLED 1002 (1065)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ 1002 (1065)
++..++||+||+|||++++ +.++..+++|.+.+++...+........+++++.+. ...+-+++++.++ ..+..++++
T Consensus 909 ~~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~~~~~~ 988 (1018)
T KOG2002|consen 909 DSDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAFISTSERSDDDVVKKAESDSDDDSQDSREASEESDR 988 (1018)
T ss_pred cccchhhccCccccccccccccCCcchhhhccChhhccchhhhhhhcccccccccccCcccCCcccccccccchhhccCC
Confidence 2444555566555553322 333444545667777777777776666665333222 2233344445555 888899988
Q ss_pred C-CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001509 1003 S-DVDDEMAPSITAARRRRALSESDDDEPF 1031 (1065)
Q Consensus 1003 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1065)
+ |+|.|..+++. .||++++|.|||..++
T Consensus 989 ~~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 989 PIESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred ccccccccCcccc-cccchhhccccccccc
Confidence 7 77777888888 9999999999987653
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-48 Score=502.18 Aligned_cols=673 Identities=18% Similarity=0.196 Sum_probs=557.0
Q ss_pred CCCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchh
Q 001509 20 DQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKI 99 (1065)
Q Consensus 20 ~~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~ 99 (1065)
.+.......+..++...|.+...|+.++..++..|++++|...++.++...+. ....+...+.+++..|+.
T Consensus 207 g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 277 (899)
T TIGR02917 207 GNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN---------SPLAHYLKALVDFQKKNY 277 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CchHHHHHHHHHHHhcCH
Confidence 33444444555666678888899999999999999999999999998654321 223556677777777765
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001509 100 ETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1065)
Q Consensus 100 ~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1065)
. +|+..|.+++..+|.+..+++.+|.+++..|++++|...|.+++...|.+..++..++.++...|++.
T Consensus 278 ~-----------~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 278 E-----------DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred H-----------HHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 5 89999999999999888888888999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHH
Q 001509 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1065)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1065)
+|+..+.+++...|.+ ..++..+|.++...|++++|+..|.+++..+|++..++..++.++...|+ +.+|+..+.+
T Consensus 347 ~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~ 422 (899)
T TIGR02917 347 EAIATLSPALGLDPDD-PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD---PSEAIADLET 422 (899)
T ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHH
Confidence 9999999999888888 66788899999999999999999999999999999999999999988888 8899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Q 001509 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1065)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1065)
++...|....+...++..+...|++++|...+...+... |..+..+..+|.++...|++++|+.+|.+++. ..|
T Consensus 423 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~ 496 (899)
T TIGR02917 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ---PDNASLHNLLGAIYLGKGDLAKAREAFEKALS---IEP 496 (899)
T ss_pred HHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCC
Confidence 999988888888888888999999999999888887653 55667888889999999999999999998887 456
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
....+++.+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|+.++.+++..+|.+..
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------- 568 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE-------- 568 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--------
Confidence 677788888999999999999999999999888888888888999998999999999999998888887663
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH----hhhhhhhhhcccCCCCc
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHV 495 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 495 (1065)
.+..++.++...|++++|+.++++++...+... ............ ......+.....
T Consensus 569 -------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 629 (899)
T TIGR02917 569 -------PALALAQYYLGKGQLKKALAILNEAADAAPDSP-------EAWLMLGRAQLAAGDLNKAVSSFKKLLA----- 629 (899)
T ss_pred -------HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence 344555555566666666666655554322100 000000000000 011111111111
Q ss_pred CCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Q 001509 496 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 575 (1065)
Q Consensus 496 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 575 (1065)
..|..+.++..++.++...|++++|+.+|.+++..+|++..++..++.++...|++++|+.+++.+....|.++.++..
T Consensus 630 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 708 (899)
T TIGR02917 630 -LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL 708 (899)
T ss_pred -hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHH
Confidence 4566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHH
Q 001509 576 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 655 (1065)
Q Consensus 576 l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~ 655 (1065)
+|.++...|++++|+..|.+++...|.. ..+..++.+ |... |++++|+..+.+++..+|+++.++
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~-~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRA-LLAS------------GNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999887764 566678888 8887 999999999999999999999999
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001509 656 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 735 (1065)
Q Consensus 656 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~ 735 (1065)
+.+|.++...|++++|+.+|+++++..| +++.++.++|+++...|+ .+|+.+|++++.. .+.++.++..+|.
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~ 845 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGW 845 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 9999999999999999999999999887 678999999999999999 8899999999988 4556778899999
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhhH
Q 001509 736 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773 (1065)
Q Consensus 736 ~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~~ 773 (1065)
+++..|++++|..+|++++...|.++.++++++.++..
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLA 883 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887554
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-48 Score=499.50 Aligned_cols=656 Identities=20% Similarity=0.233 Sum_probs=486.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHH
Q 001509 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1065)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~ 116 (1065)
+.....+..+|..|+..|++++|+..|++++...+ ....++..++.++...|+.. +|+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---------~~~~~~~~la~~~~~~~~~~-----------~A~~~ 181 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP---------RSLYAKLGLAQLALAENRFD-----------EARAL 181 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------CChhhHHHHHHHHHHCCCHH-----------HHHHH
Confidence 34566788889999999999999999988866533 23456778888888887665 78888
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 001509 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1065)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1065)
+++++..+|.++.+++.+|.+++..|++++|+..|++++..+|.++.+++.++.++...|++++|...+..++...|..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~- 260 (899)
T TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS- 260 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1065)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1065)
..+++..|.+++..|+++.|+..|++++..+|++..++..+|.++...|+ +++|+..+.+++...|.++.++..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~ 337 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGN---LEQAYQYLNQILKYAPNSHQARRLLAS 337 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 55677778888888888888888888888888887778888888888887 888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcC
Q 001509 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1065)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1065)
++...|++.+|...+..++... |..+..+..+|.++...|++++|+.+|.+++. ..|....+++.+|.++...|
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD---PDDPAALSLLGEAYLALGDFEKAAEYLAKATE---LDPENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhCC
Confidence 8888888888888888777653 45567778888888888888888888888776 34566677777888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001509 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF 436 (1065)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~ 436 (1065)
++.+|+..|.+++...|....+...++.++...|++++|+..+.+++...|.++ .+++.+|.++.
T Consensus 412 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~ 476 (899)
T TIGR02917 412 DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA---------------SLHNLLGAIYL 476 (899)
T ss_pred ChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc---------------HHHHHHHHHHH
Confidence 888888888888887777777777777777777777777777777777777665 35666677777
Q ss_pred HcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH----hhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHH
Q 001509 437 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 512 (1065)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 512 (1065)
..|++++|+.+|.+++...+.... ........... ......+..+.. ..|....++..++.++
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFP-------AAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLY 543 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHH
Confidence 777777777777777654331100 00000000000 011122222211 3455667777777777
Q ss_pred HHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHH
Q 001509 513 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 592 (1065)
Q Consensus 513 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 592 (1065)
...|++++|..++.+++..+|.+...+..++.++...|++++|+.++++++...|.++.+|..+|.++...|++++|+..
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHH
Q 001509 593 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 672 (1065)
Q Consensus 593 ~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 672 (1065)
|++++...|. +..++..+|.+ |... |++++|+..|++++..+|++..+++.++.++...|++++|+
T Consensus 624 ~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 624 FKKLLALQPD-SALALLLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHHHHhCCC-ChHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777766554 55566677777 7666 77777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 001509 673 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 752 (1065)
Q Consensus 673 ~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~k 752 (1065)
.+++.+....| .++.++..+|.++...|++++|+..|++++...|.+ .++..++.++...|++++|...+++
T Consensus 690 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 690 KIAKSLQKQHP-----KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHhhCc-----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777665 456677777777777777777777777777764332 5666777777777777777777777
Q ss_pred HHHhCCCCcchHHHHHHHhh
Q 001509 753 AIHLAPSNYTLRFDAGVAMQ 772 (1065)
Q Consensus 753 al~~~P~~~~~~~nla~~~~ 772 (1065)
++...|++..+.+++|.++.
T Consensus 762 ~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 762 WLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHH
Confidence 77777777777777766543
No 4
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-44 Score=400.78 Aligned_cols=617 Identities=16% Similarity=0.168 Sum_probs=515.9
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001509 23 PRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1065)
Q Consensus 23 ~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~ 102 (1065)
.+....+..+|+..|.+.-.++-.|...|..|+|..|+.+|..++...+.. ..+....+|.++..+|...
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~--------~aD~rIgig~Cf~kl~~~~-- 216 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC--------KADVRIGIGHCFWKLGMSE-- 216 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc--------CCCccchhhhHHHhccchh--
Confidence 344556778888999999999999999999999999999999976654321 2334556788888999877
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001509 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1065)
Q Consensus 103 ~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1065)
.|+..|.++++++|.++.+++.+|.+-+...+ +..+...+..+...+|.||.++..+|.-++..|+|.
T Consensus 217 ---------~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 217 ---------KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred ---------hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHH
Confidence 89999999999999999999999988887654 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccchHhHHHHHHH
Q 001509 180 DSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN-VEALVALAVMDLQANEAAGIRKGMEK 256 (1065)
Q Consensus 180 ~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~~~~~~~~~A~~~ 256 (1065)
.+..+...++...-.. ....++.+|.+|..+|+|++|..+|..++..+|++ .-.++.+|++++..|+ +..+..+
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d---le~s~~~ 364 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD---LEESKFC 364 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch---HHHHHHH
Confidence 9999999999876333 24568999999999999999999999999999998 7789999999999999 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 257 MQRAFEIYPYCAMALNYLANHFFFTG----QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1065)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1065)
|.+++...|++..+...||.+|...+ ..+.|..+..+++... |.+..+|..++.++....-+.. +.+|..++
T Consensus 365 fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---~~d~~a~l~laql~e~~d~~~s-L~~~~~A~ 440 (1018)
T KOG2002|consen 365 FEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---PVDSEAWLELAQLLEQTDPWAS-LDAYGNAL 440 (1018)
T ss_pred HHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHhcChHHH-HHHHHHHH
Confidence 99999999999999999999999886 4566777777777664 7888999999999887666555 99999988
Q ss_pred HhcC--CCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 333 KEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPD-----NCETLKALGHIYVQLGQIEKAQELLR 400 (1065)
Q Consensus 333 ~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1065)
..+. ..+.-+..+.++|..++..|++..|...|..++.. +++ +....+++|.++...++++.|...|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 6442 22344567889999999999999999999999876 222 23458899999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhh
Q 001509 401 KAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 480 (1065)
Q Consensus 401 ~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1065)
.++..+|...+ .+..+|++....++..+|..+++.++.
T Consensus 521 ~Ilkehp~YId---------------~ylRl~~ma~~k~~~~ea~~~lk~~l~--------------------------- 558 (1018)
T KOG2002|consen 521 SILKEHPGYID---------------AYLRLGCMARDKNNLYEASLLLKDALN--------------------------- 558 (1018)
T ss_pred HHHHHCchhHH---------------HHHHhhHHHHhccCcHHHHHHHHHHHh---------------------------
Confidence 99999999884 677888888889999999999999987
Q ss_pred hhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHH----------
Q 001509 481 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--DYVDAYLRLAAIAKA---------- 548 (1065)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~---------- 548 (1065)
.+..++.++..+|.++.....+..|..-|..++..-. .++.+.+.||.+++.
T Consensus 559 ----------------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 559 ----------------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred ----------------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 4556888999999999999999999988877775332 346677778887663
Q ss_pred --cCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcC
Q 001509 549 --RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 626 (1065)
Q Consensus 549 --~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~ 626 (1065)
.+.+..|+..|.+++..+|.+..+-..+|.++...|++..|+.+|.++...... ...+|+++|++ |...
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~-~~e~------- 693 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHC-YVEQ------- 693 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHH-HHHH-------
Confidence 345778999999999999999999999999999999999999999998875542 55678889999 9998
Q ss_pred hhHHhhhHHHHHHHHHHHHhhCC--cchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHc
Q 001509 627 PKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 704 (1065)
Q Consensus 627 ~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~ 704 (1065)
|+|-.|++.|+.+++..- +++..+..||.++.+.|.+.+|...+..++...| .++.+.||+|.+..+.
T Consensus 694 -----~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p-----~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 694 -----GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP-----SNTSVKFNLALVLKKL 763 (1018)
T ss_pred -----HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-----ccchHHhHHHHHHHHH
Confidence 999999999999998743 4788999999999999999999999999999987 6788999999887763
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 705 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 705 g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
+ +.+++. +. ..+-.+....+..+.|.++|..+-...+.
T Consensus 764 a---------~s~lr~---~k-----~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 764 A---------ESILRL---EK-----RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred H---------HHHHhc---cc-----ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 122222 11 22334555667778899999988777655
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-45 Score=389.54 Aligned_cols=462 Identities=20% Similarity=0.253 Sum_probs=424.0
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1065)
.+......+.++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ..++.++
T Consensus 44 t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~ 122 (966)
T KOG4626|consen 44 THEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNL 122 (966)
T ss_pred CCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHH
Confidence 344455678889999999999999999999999999999999999999999999999999999999999998 7888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001509 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1065)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1065)
|.++...|++..|+..|+.++++.|++.++|.++|.++...|+ ...|..+|..+++++|....
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~c-------------- 185 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLYC-------------- 185 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchhh--------------
Confidence 9999999999999999999999999999999999999999998 89999999999999886653
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHH
Q 001509 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363 (1065)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 363 (1065)
+...+|..+...|+..+|..+|.+++. ..|.+..+|.++|.++...|+...|+.
T Consensus 186 -----------------------a~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 186 -----------------------ARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred -----------------------hhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHH
Confidence 444566677777888888888888887 567888999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 001509 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 443 (1065)
Q Consensus 364 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~ 443 (1065)
.|++++.++|..+++|++||.+|...+.++.|+..|.+++.+.|+.. .++.|+|++|+.+|..+-
T Consensus 240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A---------------~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA---------------VAHGNLACIYYEQGLLDL 304 (966)
T ss_pred HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch---------------hhccceEEEEeccccHHH
Confidence 99999999999999999999999999999999999999999999987 578899999999999999
Q ss_pred HHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHH
Q 001509 444 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 523 (1065)
Q Consensus 444 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 523 (1065)
|+..|+++++ ..|..+.++.++|..+...|+..+|..
T Consensus 305 AI~~Ykral~-------------------------------------------~~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 305 AIDTYKRALE-------------------------------------------LQPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHHHHHHHHh-------------------------------------------cCCCchHHHhHHHHHHHhccchHHHHH
Confidence 9999999998 678889999999999999999999999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCC
Q 001509 524 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 603 (1065)
Q Consensus 524 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 603 (1065)
+|.+++...|+++++.++||.++..+|.+++|..+|.+++..+|....+..+||.+|.++|++++|+.+|+.++.+.|.
T Consensus 342 cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~- 420 (966)
T KOG4626|consen 342 CYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT- 420 (966)
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 001509 604 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 604 d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
-..++..+|+. |-.. |+...|+++|.+++..+|....+..+||.+|-..|++.+|+..|+.++.+.|
T Consensus 421 fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 421 FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 67788899999 9888 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcchHHHHHHHHHHHHcCC
Q 001509 684 GSVFVQMPDVWINLAHVYFAQGN 706 (1065)
Q Consensus 684 ~~~~~~~~~~~~~lg~~~~~~g~ 706 (1065)
+.|+++.|+.+++.-..+
T Consensus 488 -----DfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 488 -----DFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred -----CCchhhhHHHHHHHHHhc
Confidence 889999999999765443
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-44 Score=381.00 Aligned_cols=473 Identities=21% Similarity=0.249 Sum_probs=436.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhH
Q 001509 28 DILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 107 (1065)
Q Consensus 28 ~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~ 107 (1065)
.++.-+...+......+.+|.-.|+.|+|.+|.+....+-..++ .+...+..++.++++..+.+
T Consensus 36 ~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~---------t~~~~llll~ai~~q~~r~d------- 99 (966)
T KOG4626|consen 36 SVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDP---------TNTERLLLLSAIFFQGSRLD------- 99 (966)
T ss_pred HHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCC---------Ccccceeeehhhhhcccchh-------
Confidence 33333333344445578999999999999999999988755533 23345667788888777665
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
.....-..+++.+|...+++-.+|.++-..|+++.|+..|..++++.|+++.+|.++|.++...|+...|..+|..
T Consensus 100 ----~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 100 ----KSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred ----hhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 5666677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC
Q 001509 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1065)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1065)
+++++|.. ..++..+|.++...|+..+|..+|.++++..|....+|..||.++..+|+ ...|+..|.++++++|+.
T Consensus 176 alqlnP~l-~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge---i~~aiq~y~eAvkldP~f 251 (966)
T KOG4626|consen 176 ALQLNPDL-YCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGE---IWLAIQHYEEAVKLDPNF 251 (966)
T ss_pred HHhcCcch-hhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcch---HHHHHHHHHHhhcCCCcc
Confidence 99999998 67789999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhh
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1065)
+.+++.||++|...+.++.|+..|.+++.. .|..+.++-++|.+|..+|..+-|+..|++++. ..|.+..++.+
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~N 325 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNN 325 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhH
Confidence 999999999999999999999999999987 478889999999999999999999999999998 67999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHH
Q 001509 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427 (1065)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 427 (1065)
+|..+-..|+..+|..+|.+++...|++++++++||.+|..+|.++.|..+|.+++...|... ..
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a---------------aa 390 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA---------------AA 390 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh---------------hh
Confidence 999999999999999999999999999999999999999999999999999999999999887 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHH
Q 001509 428 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 507 (1065)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 507 (1065)
++|+|.+|.++|++++|+.+|+.++. +.|..+.++.+
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~Ykealr-------------------------------------------I~P~fAda~~N 427 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALR-------------------------------------------IKPTFADALSN 427 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHh-------------------------------------------cCchHHHHHHh
Confidence 89999999999999999999999998 67889999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchH
Q 001509 508 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 587 (1065)
Q Consensus 508 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 587 (1065)
+|..|..+|+.+.|+..|.+++..+|..++++.+||.+|...|+..+|+..|+.++++.|+.++++-++..++.-..+|.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876666554
Q ss_pred H
Q 001509 588 K 588 (1065)
Q Consensus 588 ~ 588 (1065)
.
T Consensus 508 D 508 (966)
T KOG4626|consen 508 D 508 (966)
T ss_pred c
Confidence 4
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.7e-41 Score=428.94 Aligned_cols=626 Identities=14% Similarity=0.073 Sum_probs=415.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHH
Q 001509 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1065)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~ 116 (1065)
+.+...++..+..+..+++.+.|.+.|++++..++ +++.++..++.+++..|+.. +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p---------~~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDP---------NNPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCC---------CCHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 34566688999999999999999999999977644 35678888999999999877 99999
Q ss_pred HHHHhhcCCCChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChH
Q 001509 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (1065)
Q Consensus 117 ~~~a~~~~p~~~~~~----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~ 179 (1065)
+++++.++|+++.++ +.+|.++...|++++|+..|++++..+|.+.. ++.....+....|+++
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 66788899999999999999999999888754 2333333444569999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-------------
Q 001509 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (1065)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------------- 246 (1065)
+|+..|++++..+|.+ ..+++.+|.+++..|++++|+..|++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 77899999999999999999999999987654332211111000001111
Q ss_pred ----hHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHH
Q 001509 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1065)
Q Consensus 247 ----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1065)
...+..|...+.+.....++.......+|..+...|++++|+..+++++... |.++.+++.+|.++...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 0112233333333322222222222345778888888888888888888763 566788888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001509 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1065)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1065)
+|+.+|.+++...+..+.. ......+|.++...|++++|+..|++++..+|.++.++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 8888888888754332221 11223457778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhh
Q 001509 392 IEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 471 (1065)
Q Consensus 392 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 471 (1065)
+++|+.+|++++..+|.+.. ++..++.++. .+++++|+.++..+....+.. ....
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~---------------a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~--~~~~------- 455 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTN---------------AVRGLANLYR-QQSPEKALAFIASLSASQRRS--IDDI------- 455 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH--HHHH-------
Confidence 88888888888888888764 3455566553 345677776665433221100 0000
Q ss_pred hhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCC
Q 001509 472 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 551 (1065)
Q Consensus 472 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 551 (1065)
........+..+|.++...|++++|+..|++++..+|+++.+++.++.++...|+
T Consensus 456 -------------------------~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 456 -------------------------ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred -------------------------HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 0001223455667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCCh---------HHHHhhHHHHHHHHHhh
Q 001509 552 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS---------YATLSLGNWNYFAALRN 622 (1065)
Q Consensus 552 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~---------~~~~~lg~~~y~~~~~~ 622 (1065)
+++|+..|++++..+|.++..++.++.++...+++++|+..+.++......... ...+.+++. +...
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~--- 586 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS--- 586 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC---
Confidence 777777777777777777777776666666667777777666654322111110 011233333 3333
Q ss_pred hhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 001509 623 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 702 (1065)
Q Consensus 623 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~ 702 (1065)
|++++|+.+++ .+|.++.++..+|.++...|++++|+..|++++...| +++.+++++|.+|.
T Consensus 587 ---------G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~ 648 (1157)
T PRK11447 587 ---------GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDI 648 (1157)
T ss_pred ---------CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Confidence 55555555544 3455555555555555555555555555555555554 44555555555555
Q ss_pred HcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 703 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 703 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
..|++++|+..|++++.. .+.++.++..+|.++...|++++|..+|++++...|++
T Consensus 649 ~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 555555555555555544 23334455555555555555555555555555555443
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5e-41 Score=429.45 Aligned_cols=598 Identities=16% Similarity=0.120 Sum_probs=473.5
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001509 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1065)
Q Consensus 82 ~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1065)
....|...+.++...++.+ .|.+.+.+++.++|+++.++..++.+++..|++++|...++++++.+|++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~ 95 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS 95 (1157)
T ss_pred HHHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC
Confidence 3455777788888888766 89999999999999999999999999999999999999999999999999
Q ss_pred HHHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 162 VPAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1065)
Q Consensus 162 ~~a~----------------~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1065)
+.++ +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~ 175 (1157)
T PRK11447 96 NAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA 175 (1157)
T ss_pred hHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Confidence 7763 667889999999999999999999999888433333334444456999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC---
Q 001509 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--- 302 (1065)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--- 302 (1065)
.+|+++.++..++.++...|+ +++|+..+++++...+....+...........+....+...+...+...+..+
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 999999999999999999999 99999999999876554332221111111122223333333333322221111
Q ss_pred --------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHH
Q 001509 303 --------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1065)
Q Consensus 303 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1065)
........+|.++...|++++|+..|.+++. ..|....+++.+|.++...|++++|+.+|+++
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A 329 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKA 329 (1157)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111223568999999999999999999998 45777889999999999999999999999999
Q ss_pred HHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001509 369 LEIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVI 434 (1065)
Q Consensus 369 l~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~ 434 (1065)
+..+|++.. ....+|.++...|++++|+..|++++..+|.+. .++..+|.+
T Consensus 330 l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~---------------~a~~~Lg~~ 394 (1157)
T PRK11447 330 LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS---------------YAVLGLGDV 394 (1157)
T ss_pred HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHH
Confidence 999997642 223458889999999999999999999999987 467889999
Q ss_pred HHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHH
Q 001509 435 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 514 (1065)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 514 (1065)
+...|++++|+.+|++++. ..|.+..++..++.+|..
T Consensus 395 ~~~~g~~~eA~~~y~~aL~-------------------------------------------~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALR-------------------------------------------MDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998 456677888899998864
Q ss_pred cCChHHHHHHHHHHHHHCCCh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccc
Q 001509 515 IHDTVAASVLYRLILFKYQDY---------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 585 (1065)
Q Consensus 515 ~g~~~~A~~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 585 (1065)
+++++|+.++..+....+.. ...+..+|.++...|++++|+.+|++++.++|+++.+++.++.+|...|+
T Consensus 432 -~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 -QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred -cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 67899998887654433221 34567789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhH---HhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHH
Q 001509 586 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL---EATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 662 (1065)
Q Consensus 586 ~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~---~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 662 (1065)
+++|+..|++++...|. ++.+++.++.+ +....+........ ....+..++..+...+.. .....++..+
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~-l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~-----~~~l~~a~~l 583 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLY-LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS-----DQVLETANRL 583 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHH-HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh-----hHHHHHHHHH
Confidence 99999999999987775 56666666644 33221111100000 001122222222222221 1345778899
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 001509 663 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 742 (1065)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~ 742 (1065)
...|++++|+.+++ ..| .++.+++.+|.+|...|++++|+..|++++.. .|.++.+++.++.+|...|+
T Consensus 584 ~~~G~~~eA~~~l~----~~p-----~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 584 RDSGKEAEAEALLR----QQP-----PSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHCCCHHHHHHHHH----hCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 99999999999887 344 67889999999999999999999999999998 56678899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHhhH
Q 001509 743 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773 (1065)
Q Consensus 743 ~~~A~~~~~kal~~~P~~~~~~~nla~~~~~ 773 (1065)
+++|+..|++++...|+++.++..+|.++..
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 9999999999999999999999999987654
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.4e-35 Score=357.98 Aligned_cols=633 Identities=11% Similarity=0.002 Sum_probs=489.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001509 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1065)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1065)
....+..|..+...|++++|+..|+.++..+| +...++..|+.+|+..|+.. +|+.++++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP---------~n~~~~~~LA~~yl~~g~~~-----------~A~~~~~k 103 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVP---------DNIPLTLYLAEAYRHFGHDD-----------RARLLLED 103 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHH-----------HHHHHHHH
Confidence 34668888888888999999999999987754 34668899999999999877 99999999
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHh
Q 001509 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~Al~~~~~al~~ 191 (1065)
+++.+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.. |.+.+....++. .+.+..
T Consensus 104 Av~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~ 177 (987)
T PRK09782 104 QLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA 177 (987)
T ss_pred HHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC
Confidence 999999998888877666 999999999999999999999999999998 666655555554 333333
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHhCCCCHHH
Q 001509 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1065)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1065)
+|.. ..+.+.++.+|..+|+++.|+..+.++++..|.+...+..|+.+|... ++ +.++.++...++ .++.+
T Consensus 178 ~~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~lk---~d~~l 249 (987)
T PRK09782 178 SPEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGIF---TDPQS 249 (987)
T ss_pred CCCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhcc---cCHHH
Confidence 3333 556777799999999999999999999999999999999999988873 43 666666554322 78999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHH-----------------------------HHHHHHcCCH
Q 001509 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL-----------------------------ARSYHSKGDY 321 (1065)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l-----------------------------a~~~~~~g~~ 321 (1065)
+..++..|...|+.++|...+...-......|.....++.+ +..+...+.+
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999887654444434443333333 3344445555
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1065)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (1065)
+-+..+ +. ..|.... ...........+.+.++.......+...|.+...+..++....+.|++.+|..+|+.
T Consensus 330 ~~~~~~----~~---~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~ 401 (987)
T PRK09782 330 DAAQKL----LA---TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQ 401 (987)
T ss_pred HHHHHH----hc---CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 533322 11 1222222 222222333557888888888888888899999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHc--ccchhhhcccccchhhhhhhhhH
Q 001509 402 AAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALG--DGIWLTLLDSKTKTYVIDASASM 476 (1065)
Q Consensus 402 al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~ 476 (1065)
++...++ .. .+..+...++.+|...+. ...++.+...+-. .+.|........
T Consensus 402 ~~~~~~~-~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------- 458 (987)
T PRK09782 402 RYPFQGD-AR-----------LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIA----------- 458 (987)
T ss_pred hcCCCcc-cc-----------cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhh-----------
Confidence 9886332 21 122345577888887766 3333333211100 000000000000
Q ss_pred HHhhhhhhhhhcccCCCCcCCCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHH
Q 001509 477 LQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 554 (1065)
Q Consensus 477 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 554 (1065)
.....+ ...+...|. .+.+++++|.++.. +++.+|+..|.+++...|+.. ..+.++.++...|++++
T Consensus 459 ---~~~~~~------~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 459 ---DNCPAI------VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYAT 527 (987)
T ss_pred ---hhHHHH------HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHH
Confidence 000000 011124566 88999999999998 899999999999999999854 46677888889999999
Q ss_pred HHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhH
Q 001509 555 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 634 (1065)
Q Consensus 555 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 634 (1065)
|+..|++++...|. ...+..+|.++...|++..|..+|.+++...|. .......++.. .... |++
T Consensus 528 Ai~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~-l~~~------------Gr~ 592 (987)
T PRK09782 528 ALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ-RYIP------------GQP 592 (987)
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH-HHhC------------CCH
Confidence 99999998777555 456788999999999999999999999988765 33333334433 3344 999
Q ss_pred HHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 635 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714 (1065)
Q Consensus 635 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 714 (1065)
++|+..|++++..+|+ ..++.++|.++...|++++|+..|++++...| +++.++.++|.++...|++++|+..|
T Consensus 593 ~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 593 ELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999996 88999999999999999999999999999998 78999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHh
Q 001509 715 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 771 (1065)
Q Consensus 715 ~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~ 771 (1065)
+++++. .|.++.+++.+|.++...|++++|..+|++++.+.|++..+.+-++.+.
T Consensus 667 ~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 667 ERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 999998 5677899999999999999999999999999999999999888777653
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=6.6e-34 Score=345.46 Aligned_cols=634 Identities=12% Similarity=0.008 Sum_probs=492.3
Q ss_pred CCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh
Q 001509 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE 100 (1065)
Q Consensus 21 ~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~ 100 (1065)
+.......+..+|..+|.+..+++.+|..|+.+|++++|+..+++++..++ ++...+..|+.+ ++
T Consensus 59 d~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP---------~n~~~~~~La~i----~~-- 123 (987)
T PRK09782 59 DEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP---------GDARLERSLAAI----PV-- 123 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---------ccHHHHHHHHHh----cc--
Confidence 334456677788889999999999999999999999999999999987754 233344444444 33
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001509 101 TKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQL--------LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172 (1065)
Q Consensus 101 ~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 172 (1065)
+.+|+..|++++..+|.+..+++.++.. |.+.+....|+. .+.+...|......+.++.+|
T Consensus 124 ---------~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY 192 (987)
T PRK09782 124 ---------EVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRA 192 (987)
T ss_pred ---------ChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHH
Confidence 4489999999999999999999999998 666655555554 333333444556677779999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHH
Q 001509 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 251 (1065)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~ 251 (1065)
..+|+|++|+..+.++++..|.+ ...+..++.+|.. +++ +.|..++...++ .++.++..++..+...|+ .+
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~---~~ 264 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE---KA 264 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC---HH
Confidence 99999999999999999999999 6778889998888 577 888888775333 788999999999999999 66
Q ss_pred HHHHHHHH---HHHhCCCCHHHHHHHHH-----------------------------HHHHcCCHHHHHHHHHHHHhccC
Q 001509 252 KGMEKMQR---AFEIYPYCAMALNYLAN-----------------------------HFFFTGQHFLVEQLTETALAVTN 299 (1065)
Q Consensus 252 ~A~~~~~~---al~~~p~~~~~~~~la~-----------------------------~~~~~g~~~~A~~~~~~al~~~~ 299 (1065)
+|...+.. +....|.+..-++.++. ++...+++..++.+ +.
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--- 337 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LA--- 337 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hc---
Confidence 66655554 33344555544444443 34444444433322 11
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---H
Q 001509 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---C 376 (1065)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~ 376 (1065)
..|..+. ...........+.+.+|......... ..|....++...+...+..|++.+|..+|+.++...++. .
T Consensus 338 ~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~---~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 338 TLPANEM-LEERYAVSVATRNKAEALRLARLLYQ---QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred CCCcchH-HHHHHhhccccCchhHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 1233332 22222233455888888888887776 557788889999999999999999999999999863332 3
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHH------------HHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 001509 377 ETLKALGHIYVQLGQ---IEKAQEL------------LRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 441 (1065)
Q Consensus 377 ~~~~~la~~~~~~g~---~~~A~~~------------~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~ 441 (1065)
.....++.+|...+. ..+++.+ ..+.....|........+........+.+++++|.++.. |++
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 455588889888866 4444333 111111112111111111110101145789999999987 899
Q ss_pred HHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHH
Q 001509 442 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 521 (1065)
Q Consensus 442 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 521 (1065)
.+|+..|.+++.. .|.. .....+|.++...|++++|
T Consensus 493 ~eAi~a~~~Al~~-------------------------------------------~Pd~-~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 493 GVALYAWLQAEQR-------------------------------------------QPDA-WQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred HHHHHHHHHHHHh-------------------------------------------CCch-HHHHHHHHHHHHCCCHHHH
Confidence 9999999999873 3332 3466678888899999999
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCC
Q 001509 522 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 601 (1065)
Q Consensus 522 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 601 (1065)
+..|++++...|. ...++.+|.++...|++.+|..+|++++..+|.....+..++......|++++|+..|.+++...|
T Consensus 529 i~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 529 LAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 9999998776555 456788999999999999999999999999999988888877777788999999999999999888
Q ss_pred CCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHH
Q 001509 602 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 681 (1065)
Q Consensus 602 ~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 681 (1065)
. ..++..+|.+ +... |++++|+..|.+++..+|+++.+++++|.++...|++++|+..|+++++.
T Consensus 608 ~--~~a~~~LA~~-l~~l------------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 608 S--ANAYVARATI-YRQR------------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred C--HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 6788899999 8888 99999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCc
Q 001509 682 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 761 (1065)
Q Consensus 682 ~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~ 761 (1065)
.| +++.+++++|.++..+|++++|+..|++++.. .+..+.+....|.+.....++..|.+.+.++..+.|...
T Consensus 673 ~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 673 LP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 98 78999999999999999999999999999998 566688999999999999999999999999999999876
Q ss_pred chHHHHH
Q 001509 762 TLRFDAG 768 (1065)
Q Consensus 762 ~~~~nla 768 (1065)
+...++
T Consensus 746 -a~~~~g 751 (987)
T PRK09782 746 -IGLRSG 751 (987)
T ss_pred -hccccc
Confidence 444443
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4e-32 Score=326.99 Aligned_cols=437 Identities=16% Similarity=0.149 Sum_probs=248.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
.+..+|..++..|+|++|+..|.+++...|+ +..+..+|.+|...|+|++|+..|.+++.++|++ ..+++.+|.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 4556777777777777777777777777774 5677777777777777777777777777777777 5667777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001509 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1065)
+|++++|+..|..++..++.+......+....+ ...+...+..++...|.+...+..++.++.... ......
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSFR-PKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcc-CCcchh
Confidence 777777777777666665543322111111111 122334455555666665555555544332111 111111
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHH
Q 001509 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1065)
Q Consensus 290 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1065)
.+..... ..+.....+..++..+... ...+.+++|+..|++++
T Consensus 279 ~~~~~~~---~~~~~~~~~~~l~~~~~e~----------------------------------~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 279 GLEDSNE---LDEETGNGQLQLGLKSPES----------------------------------KADESYEEAARAFEKAL 321 (615)
T ss_pred hhhcccc---cccccccchHHHHHHHHHh----------------------------------hhhhhHHHHHHHHHHHH
Confidence 1111110 0111122222222221110 12244445555555554
Q ss_pred Hh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001509 370 EI---YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 446 (1065)
Q Consensus 370 ~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 446 (1065)
.. .|....++..+|.++...|++++|+..|++++.++|... ..+..+|.++...|++++|+.
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~---------------~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT---------------QSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHCCCHHHHHH
Confidence 43 233444455555555555555555555555555555444 234445555555555555555
Q ss_pred HHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 447 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 526 (1065)
Q Consensus 447 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 526 (1065)
.|.+++. ..|.++.+++.+|.++...|++++|+..|+
T Consensus 387 ~~~~al~-------------------------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 387 DFDKALK-------------------------------------------LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555544 233444555555555555555555555555
Q ss_pred HHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCCh-
Q 001509 527 LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS- 605 (1065)
Q Consensus 527 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~- 605 (1065)
+++..+|++..++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|.+++...|....
T Consensus 424 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 424 KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred HHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555443211
Q ss_pred ----HHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHH
Q 001509 606 ----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 681 (1065)
Q Consensus 606 ----~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 681 (1065)
..++..+.+.|... +++++|+.+|++++.++|.+..++..+|.++...|++++|+..|+++++.
T Consensus 504 ~~~~~~l~~~a~~~~~~~------------~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 504 YMNVLPLINKALALFQWK------------QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11112222213334 88999999999999999999889999999999999999999999999888
Q ss_pred hc
Q 001509 682 AS 683 (1065)
Q Consensus 682 ~p 683 (1065)
.+
T Consensus 572 ~~ 573 (615)
T TIGR00990 572 AR 573 (615)
T ss_pred hc
Confidence 75
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5e-32 Score=326.10 Aligned_cols=438 Identities=16% Similarity=0.105 Sum_probs=354.9
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1065)
Q Consensus 83 ~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1065)
...+..+|..|+..|++. +|+..|++++.+.|+ +..+..+|.+|+..|++++|+..|.+++..+|++.
T Consensus 127 a~~~k~~G~~~~~~~~~~-----------~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~ 194 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFN-----------KAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS 194 (615)
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Confidence 445666777777777655 999999999999995 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1065)
.+++.+|.++...|+|++|+..|..++...+.........+...+ ...+...+..++...|.+...+..++.++.
T Consensus 195 ~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 195 KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 999999999999999999999998888776655222111111111 134566677777888887777777766553
Q ss_pred HccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcC
Q 001509 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (1065)
Q Consensus 243 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1065)
... ...+...+......+|.....+..++..+. ..+.|++|+..|+.++......|....++..+|.++...|
T Consensus 270 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 270 SFR----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred Hcc----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 221 222233344455556665555555554433 3478999999999999876556777888999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1065)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (1065)
++++|+..|.+++. ..|....+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|
T Consensus 346 ~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 346 KHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred CHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999987 567778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHh
Q 001509 400 RKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 479 (1065)
Q Consensus 400 ~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1065)
++++.++|++. ..+.++|.++...|++++|+..|++++.
T Consensus 423 ~kal~l~P~~~---------------~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------- 461 (615)
T TIGR00990 423 QKSIDLDPDFI---------------FSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------- 461 (615)
T ss_pred HHHHHcCccCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------
Confidence 99999999887 4678889999999999999999999987
Q ss_pred hhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHH------HHHHHH-HHHHcCCH
Q 001509 480 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLAA-IAKARNNL 552 (1065)
Q Consensus 480 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a------~~~la~-~~~~~g~~ 552 (1065)
..|..+.++..+|.++...|++++|+..|.+++...|..... +...+. ++...|++
T Consensus 462 -----------------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 462 -----------------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred -----------------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 456788899999999999999999999999999988864322 222233 33446899
Q ss_pred HHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCC
Q 001509 553 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 602 (1065)
Q Consensus 553 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 602 (1065)
++|+.++++++.++|++..++..+|.++...|++++|+..|++++...+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999887554
No 13
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=1.4e-29 Score=283.27 Aligned_cols=666 Identities=17% Similarity=0.174 Sum_probs=469.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001509 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1065)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1065)
+..++..|+..+.+|++++|+.++.+++...+ ....++..||.+|-.+|+.+ ++....-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp---------~~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP---------RNPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc---------cchhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 56778999999999999999999999987643 35678999999999999887 89999999
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc---
Q 001509 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--- 196 (1065)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--- 196 (1065)
|.-++|++...|..++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|++..|...|.+++...|...
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999431
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH-----------
Q 001509 197 -GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE----------- 262 (1065)
Q Consensus 197 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~----------- 262 (1065)
...-...+..+...++-+.|+..++.++.... ...+-+..++.+++.... ++.++..+.....
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 12234457778888888999999999998332 233446677777777766 7777776655544
Q ss_pred -----------hC------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001509 263 -----------IY------PYCAMA-LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1065)
Q Consensus 263 -----------~~------p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1065)
.. +.+..+ ...++.+....++..+++ ........-.....+..++.++.+|...|+|..|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~l--l~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEAL--LHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHH--HHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 00 011122 334444444444444443 3333333222346788999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
+.+|..++.... .....+|+.+|.||..+|.++.|+.+|++++...|++.++...|+.++.++|++++|.+.+.....
T Consensus 434 l~~l~~i~~~~~--~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 434 LRLLSPITNREG--YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHhcCcc--ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999986422 233568999999999999999999999999999999999999999999999999999999998774
Q ss_pred hCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchh---hhhh--------h
Q 001509 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY---VIDA--------S 473 (1065)
Q Consensus 405 ~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~--------~ 473 (1065)
-++.+..+. .-.....+......+++..|+.++=+......+................ .+.. .
T Consensus 512 ~D~~~~e~~------a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~ 585 (895)
T KOG2076|consen 512 PDGRNAEAC------AWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSEL 585 (895)
T ss_pred CCccchhhc------cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchh
Confidence 443332211 1111125678889999999999886665555554322111111100000 0000 0
Q ss_pred hhHH----Hh-hh-hhhhhhcccC--CCCcCCCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh--H---
Q 001509 474 ASML----QF-KD-MQLFHRFEND--GNHVELPWNK----VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--V--- 536 (1065)
Q Consensus 474 ~~~~----~~-~~-~~~~~~l~~~--~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~--- 536 (1065)
.+.+ .. .+ ...-..+... .......... ......+..++.+.+++.+|+.+...++....-. .
T Consensus 586 ~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~ 665 (895)
T KOG2076|consen 586 LKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIR 665 (895)
T ss_pred HHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHH
Confidence 0000 00 00 0000000000 0000011111 2344456677888999999999888887643211 1
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHh
Q 001509 537 -DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 610 (1065)
Q Consensus 537 -~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~ 610 (1065)
...+....+.+..+++..|..+++.++.. +|....+|+..-.+....++-.--...+..++...+..++...+.
T Consensus 666 k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i 745 (895)
T KOG2076|consen 666 KELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALI 745 (895)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeee
Confidence 23333445567788999999999998887 565556666444444444544444444555555555544555555
Q ss_pred hHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcC----------CcHHHHHHHHHHHH
Q 001509 611 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG----------QFDVSKDLFTQVQE 680 (1065)
Q Consensus 611 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g----------~~~~A~~~~~~~~~ 680 (1065)
.|.. .+.. +.+.-|+..|-++...+|++|..-..+|..+.... ..-+++..+.+..+
T Consensus 746 ~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~ 812 (895)
T KOG2076|consen 746 YGHN-LFVN------------ASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKE 812 (895)
T ss_pred echh-Hhhc------------cchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 6666 6666 88999999999999999999888777777666531 34556666666655
Q ss_pred HhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--------Cc--HHHHHHHHHHHHHhhcHHHHHHHH
Q 001509 681 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--------TD--AQILLYLARTHYEAEQWQDCKKSL 750 (1065)
Q Consensus 681 ~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------~~--~~~~~~lg~~~~~~g~~~~A~~~~ 750 (1065)
+.... +...+.+|+|.+|...|-..-|+.+|+++|...|.+ .+ ..+.++|..+|..+|+...|.+++
T Consensus 813 lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil 889 (895)
T KOG2076|consen 813 LRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQIL 889 (895)
T ss_pred hhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHH
Confidence 54322 356899999999999999999999999999874321 11 678888999999999999999888
Q ss_pred HHHH
Q 001509 751 LRAI 754 (1065)
Q Consensus 751 ~kal 754 (1065)
.+-+
T Consensus 890 ~kyl 893 (895)
T KOG2076|consen 890 EKYL 893 (895)
T ss_pred Hhhc
Confidence 7643
No 14
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=6.8e-27 Score=250.80 Aligned_cols=563 Identities=15% Similarity=0.137 Sum_probs=475.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
++..+|..++....+.+|.+|..|+.-+.+--..|++..|..+..+-.+..|.+...|+.-+ +....+.|..+.-.
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHH
Confidence 46779999999999999999999999999999999999999998888888888877776543 33344445555555
Q ss_pred HHHhCCCCchHHHHHH---------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 188 ALQVHPSCPGAIRLGI---------------------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 188 al~~~p~~~~~~~~~l---------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
+++..|.+ ..+|+.. =.....+.+.+.|+..+.++++..|.+.+.|..|+.+
T Consensus 341 Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlarL 419 (913)
T KOG0495|consen 341 AVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALARL 419 (913)
T ss_pred HHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 55555544 2222211 1223345567779999999999999999999888876
Q ss_pred HHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHHc
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSK 318 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~ 318 (1065)
.. |..|...++++-+.-|.++.+|..-+.+--.+|+.+.+.+++.+.+..... ...+...|+.-+..+...
T Consensus 420 et-------YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 420 ET-------YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HH-------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 43 888999999999999999999999999999999999999999988864322 234567888889989888
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1065)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1065)
|-.-.+.......+...-...+.-..|+.-++.+.+.+.++-|+.+|..+++.+|....+|...+..-...|..+.-..+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 98888888877777655556667778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH
Q 001509 399 LRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478 (1065)
Q Consensus 399 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1065)
|++++...|... .+|...+..+...|+...|..++..+++
T Consensus 573 lqkav~~~pkae---------------~lwlM~ake~w~agdv~~ar~il~~af~------------------------- 612 (913)
T KOG0495|consen 573 LQKAVEQCPKAE---------------ILWLMYAKEKWKAGDVPAARVILDQAFE------------------------- 612 (913)
T ss_pred HHHHHHhCCcch---------------hHHHHHHHHHHhcCCcHHHHHHHHHHHH-------------------------
Confidence 999999999876 4677778889999999999999999988
Q ss_pred hhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 479 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 558 (1065)
Q Consensus 479 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 558 (1065)
..|+...+|+.-..+.....+++.|..+|.++....|. ...|+.-+.+...+++.++|+.+
T Consensus 613 ------------------~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 613 ------------------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred ------------------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHH
Confidence 56778889999999999999999999999999987776 77888888999999999999999
Q ss_pred HHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHH
Q 001509 559 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 638 (1065)
Q Consensus 559 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 638 (1065)
++.+++..|....+|..+|.++..+++.+.|...|...+...|. .+..|+.|+.+ -... |...+|.
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLWllLakl-eEk~------------~~~~rAR 739 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLWLLLAKL-EEKD------------GQLVRAR 739 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHHHHHHHH-HHHh------------cchhhHH
Confidence 99999999999999999999999999999999999999998887 66777778877 4444 8899999
Q ss_pred HHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 639 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 718 (1065)
Q Consensus 639 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 718 (1065)
.++.++.-.+|.++..|.....+-.+.|+.+.|..++.++++..|+ +...|..-.+..-.-++-..++..+.+|
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-----sg~LWaEaI~le~~~~rkTks~DALkkc- 813 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-----SGLLWAEAIWLEPRPQRKTKSIDALKKC- 813 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----cchhHHHHHHhccCcccchHHHHHHHhc-
Confidence 9999999999999999999999999999999999999999999984 4556666556555556655555554443
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHH
Q 001509 719 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 766 (1065)
Q Consensus 719 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~n 766 (1065)
..++.++..+|..++...+++.|+.+|.++++++|++..++-+
T Consensus 814 -----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 814 -----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred -----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 4567899999999999999999999999999999999888833
No 15
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-27 Score=297.63 Aligned_cols=627 Identities=14% Similarity=0.057 Sum_probs=414.2
Q ss_pred hcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhh-------------
Q 001509 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET------------- 101 (1065)
Q Consensus 35 ~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~------------- 101 (1065)
..+++...+..+...|.+.|++++|+.+|..+......+ ....+..+...+...+....
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 117 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV--------DEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC
Confidence 445667778888899999999999999999886642211 01122222222222222220
Q ss_pred -----------hhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001509 102 -----------KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQA 169 (1065)
Q Consensus 102 -----------~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la 169 (1065)
..--+.|++..|..+|.++. +.+..+|..+...|...|++++|+..|.++.... ..+..++..+.
T Consensus 118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 00001122225555555543 2244555556666666666666666666554421 11233333334
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHh
Q 001509 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1065)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1065)
..+...+++..+.+++..+++........++..+..+|.+.|+++.|...|+++.. .+...|..+...+.+.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~--- 268 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE--- 268 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---
Confidence 44445555555555555555543222234455666667777777777777776432 244556666667777766
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1065)
+.+|+..|.++.... ..+...+..+...+...|+.+.+.+++..+.... ...+..++..+...|.+.|++++|..+|
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 777777777766542 1244555666666667777777777776666543 2334566777777777777777777777
Q ss_pred HHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
..+.. + ....|..+...|.+.|++++|+.+|..+... .|+ ..++..+-..+...|+++.|..++..+.+..
T Consensus 347 ~~m~~-----~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 347 SRMET-----K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred hhCCC-----C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 66531 2 2345666777777777777777777766543 243 3444455556667777777777777666543
Q ss_pred CCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001509 407 PRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 486 (1065)
Q Consensus 407 p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1065)
.... ..+++.+...|.+.|++++|..+|.++..
T Consensus 420 ~~~~--------------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 452 (857)
T PLN03077 420 LISY--------------VVVANALIEMYSKCKCIDKALEVFHNIPE--------------------------------- 452 (857)
T ss_pred CCcc--------------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------------------------------
Confidence 3221 24677777888888888888888876532
Q ss_pred hcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 001509 487 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 566 (1065)
Q Consensus 487 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (1065)
.+..+|..+...|...|+..+|+.+|.+++...+.+..++..+...+...|+.+.+..++..++...
T Consensus 453 -------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 -------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred -------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 1445677788888888888888888888876555556677777777888888888888888887764
Q ss_pred -CCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHH
Q 001509 567 -GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 645 (1065)
Q Consensus 567 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 645 (1065)
..+..++..+...|.+.|+++.|...|... ..+..+|..+... |... |+.++|+.+|+++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~ 581 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMV 581 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 334556677888888999999999988875 3477788888888 8888 99999999999888
Q ss_pred hhCCc-chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Q 001509 646 VQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 724 (1065)
Q Consensus 646 ~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 724 (1065)
..... |...+..+...+.+.|.+++|..+|+.+.+..+-. .+...|..+..+|.+.|++++|...++++ +..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~---P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~ 654 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT---PNLKHYACVVDLLGRAGKLTEAYNFINKM----PIT 654 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCC
Confidence 75432 45567777778888999999999999888554311 24578888999999999999999888765 346
Q ss_pred CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhh
Q 001509 725 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 772 (1065)
Q Consensus 725 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~ 772 (1065)
+++.+|..|-.++...|+.+.+....++++++.|++...+..++.+|.
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 677888888888888888888888899999999998888776666543
No 16
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=5.3e-27 Score=294.05 Aligned_cols=593 Identities=13% Similarity=0.069 Sum_probs=417.1
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Q 001509 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NV 162 (1065)
Q Consensus 85 ~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~ 162 (1065)
.++.+...|...|... +|..+|..+.... |.+..++..+...+...+.+..|...+..+++..+. +.
T Consensus 53 ~~n~~i~~l~~~g~~~-----------~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 121 (857)
T PLN03077 53 DSNSQLRALCSHGQLE-----------QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV 121 (857)
T ss_pred hHHHHHHHHHhCCCHH-----------HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCc
Confidence 5667788888888776 8999999887743 345667777777888888999999999988877654 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--DPENVEALVALAVM 240 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~ 240 (1065)
.....+...|.+.|+...|..+|.+... |+ ...|..+...|.+.|++++|+..|.++... .|+ ...+..+...
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~--~d--~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~~ 196 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPE--RD--LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD-VYTFPCVLRT 196 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCC--CC--eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Confidence 4556666778888999999988887642 32 355778888889999999999999988753 353 3334444444
Q ss_pred HHHccchHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcC
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1065)
+...++ +..+.+.+..++... +.+..+++.|...|...|+++.|..+|+.+. ..+..+|..+...|.+.|
T Consensus 197 ~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~------~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 197 CGGIPD---LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP------RRDCISWNAMISGYFENG 267 (857)
T ss_pred hCCccc---hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC------CCCcchhHHHHHHHHhCC
Confidence 444444 566666665555433 2345566677777777777777777776653 123456777777777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQEL 398 (1065)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1065)
++++|+.+|..+.... ..|+ ...+..+...+...|+.+.|.+++..+.... +.+..++..+...|.+.|++++|..+
T Consensus 268 ~~~eAl~lf~~M~~~g-~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 268 ECLEGLELFFTMRELS-VDPD-LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CHHHHHHHHHHHHHcC-CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777777766532 2222 2345555666666777777777777666542 22466677777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH
Q 001509 399 LRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478 (1065)
Q Consensus 399 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1065)
|+++.. |+ . .+|+.+...|.+.|++++|+.+|.++...+... .............
T Consensus 346 f~~m~~--~d-~---------------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-------d~~t~~~ll~a~~ 400 (857)
T PLN03077 346 FSRMET--KD-A---------------VSWTAMISGYEKNGLPDKALETYALMEQDNVSP-------DEITIASVLSACA 400 (857)
T ss_pred HhhCCC--CC-e---------------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-------CceeHHHHHHHHh
Confidence 776532 21 1 246666777777777777777777665432100 0000000000000
Q ss_pred -----hhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHH
Q 001509 479 -----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 553 (1065)
Q Consensus 479 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 553 (1065)
.....++......+ . ..+..++..+...|.+.|++++|..+|.++.. .+..+|..+...|...|++.
T Consensus 401 ~~g~~~~a~~l~~~~~~~g----~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKG----L-ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred ccchHHHHHHHHHHHHHhC----C-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHH
Confidence 01111222211111 1 12456777888888899999999988887643 34567888888888899999
Q ss_pred HHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhh
Q 001509 554 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 633 (1065)
Q Consensus 554 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 633 (1065)
+|+.+|++++...+.+...+..+...+...|..+.+...+..++...-..+......|.+. |... |+
T Consensus 473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~-y~k~------------G~ 539 (857)
T PLN03077 473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL-YVRC------------GR 539 (857)
T ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH-HHHc------------CC
Confidence 9999998887654445566666666778888888998888888887766677777778888 8888 99
Q ss_pred HHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHH
Q 001509 634 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 713 (1065)
Q Consensus 634 ~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 713 (1065)
.++|...|..+ +.+..+|+.+...|...|+.++|+.+|+++.+.... .+..++..+-..|.+.|.+++|..+
T Consensus 540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~----Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 540 MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN----PDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCcccHHHHHHHHhhcChHHHHHHH
Confidence 99999999886 568889999999999999999999999999875421 2456777888889999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 714 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 714 ~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
|+.+.+.++-.++...+..+..++.+.|++++|...++++ ...|+
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 9999988788888999999999999999999999999886 34554
No 17
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=5.1e-25 Score=236.50 Aligned_cols=606 Identities=15% Similarity=0.140 Sum_probs=509.0
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHH
Q 001509 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112 (1065)
Q Consensus 33 L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~ 112 (1065)
-...|..+..|+.-|..--..|++..|..++.++.+..+.+ -.+|+..-++.. -+.
T Consensus 278 retnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS----------------eDvWLeaiRLhp--------~d~ 333 (913)
T KOG0495|consen 278 RETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS----------------EDVWLEAIRLHP--------PDV 333 (913)
T ss_pred HhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch----------------HHHHHHHHhcCC--------hHH
Confidence 34678899999999999999999999999999987765422 223333333331 125
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1065)
|..+..++++..|+++..|+.-+.+-. +...=...+.++++..|+++..|-. .....+.+.|..++.++++..
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~dLE~---~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAvecc 406 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAADLES---DTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECC 406 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHhhhh---HHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhc
Confidence 788889999999999999998776543 3344467889999999998877654 345667777999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhC-----CCC
Q 001509 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-----PYC 267 (1065)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~ 267 (1065)
|.+ ...|+.+ .++.-|+.|...+.++-+.-|.+...|..-+.+....|+ .+.....+.+.+..- .-+
T Consensus 407 p~s-~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 407 PQS-MDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEIN 478 (913)
T ss_pred cch-HHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeec
Confidence 998 5555544 456679999999999999999999999999999999998 666666666655422 225
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhh
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1065)
...|..-+..+-..|-.-.+..+....+...-.....-..|..-+..+...+.++-|..+|..+++.+ |..-..|..
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf---p~k~slWlr 555 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF---PCKKSLWLR 555 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc---cchhHHHHH
Confidence 67788888888888888888888888888776667778899999999999999999999999999855 455567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHH
Q 001509 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427 (1065)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 427 (1065)
.+..--..|..+.-..+|++++...|.....|.+.+..+...|+...|..++..++..+|++. ++
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse---------------ei 620 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE---------------EI 620 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH---------------HH
Confidence 888888889999999999999999999999999999999999999999999999999999977 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHH
Q 001509 428 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 507 (1065)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 507 (1065)
|.....+.+...+++.|..+|.++....+ ...+|+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sg--------------------------------------------TeRv~mK 656 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISG--------------------------------------------TERVWMK 656 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCC--------------------------------------------cchhhHH
Confidence 88888899999999999999999986332 6678999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchH
Q 001509 508 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 587 (1065)
Q Consensus 508 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 587 (1065)
.+.+...+++.++|+.+++.+++.+|.....|+.+|+++.+.++.+.|...|...+...|..+.+|..++.+-.+.|...
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCC
Q 001509 588 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 667 (1065)
Q Consensus 588 ~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 667 (1065)
.|...+.++.-..|. +...|+....+ -+.. |+.+.|.....++|+..|++...|..-..+.-.-++
T Consensus 737 rAR~ildrarlkNPk-~~~lwle~Ir~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 737 RARSILDRARLKNPK-NALLWLESIRM-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred hHHHHHHHHHhcCCC-cchhHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 999999999988777 55555444444 3444 999999999999999999998888777766666667
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 001509 668 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 747 (1065)
Q Consensus 668 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 747 (1065)
-..+++.+.+. . .+|.+++..|.++....++++|..+|.++++..++..| ++.++-..+...|.-++-.
T Consensus 803 kTks~DALkkc----e-----~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD--~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 803 KTKSIDALKKC----E-----HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD--AWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred chHHHHHHHhc----c-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch--HHHHHHHHHHHhCCHHHHH
Confidence 66666555544 2 57899999999999999999999999999999655555 4555556778889999999
Q ss_pred HHHHHHHHhCCCCcchH
Q 001509 748 KSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 748 ~~~~kal~~~P~~~~~~ 764 (1065)
..|.+.....|.....+
T Consensus 872 ev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 872 EVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHhccCCCCCcHH
Confidence 99999999999998777
No 18
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.97 E-value=1e-25 Score=252.58 Aligned_cols=612 Identities=14% Similarity=0.098 Sum_probs=434.2
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1065)
Q Consensus 83 ~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1065)
+..+...|...+..|+.+ +|+.++..+++.+|.++.+|+.+|.+|-++|+.++|+.++-.+-.++|.+.
T Consensus 139 l~~ll~eAN~lfarg~~e-----------eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~ 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLE-----------EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHH-----------HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence 344555566666666655 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH-HHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----VEA-LVAL 237 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a-~~~l 237 (1065)
..|..++.....+|++..|.-+|.+|++.+|.+ ....+..+.+|.++|+...|...|.+++.++|.. ... -...
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999 6778889999999999999999999999999921 111 2233
Q ss_pred HHHHHHccchHhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------
Q 001509 238 AVMDLQANEAAGIRKGMEKMQRAFEIY--PYCAMALNYLANHFFFTGQHFLVEQLTETALA------------------- 296 (1065)
Q Consensus 238 a~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------------------- 296 (1065)
+..+...++ -+.|++.+..++... --....++.++.++....+++.+.........
T Consensus 287 ~~~~~~~~~---~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 287 AHYFITHNE---RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHhhH---HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 455555655 588888888888733 23446678899999999999998887766554
Q ss_pred ---cc---CCCCCchHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHH
Q 001509 297 ---VT---NHGPTKSHS-YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1065)
Q Consensus 297 ---~~---~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1065)
.. ..-+....+ ...++.+....++..+++..+..--. ......+..++.++.++...|++.+|+.+|..+.
T Consensus 364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred ccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 10 011111222 44455555555666666555543322 1245667789999999999999999999999998
Q ss_pred HhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 370 EIYPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 448 (1065)
Q Consensus 370 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 448 (1065)
...+. +..+|+.+|.||..+|.++.|+.+|++++...|++.+ +...++.++...|+.++|++.+
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D---------------~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD---------------ARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh---------------hhhhHHHHHHhcCCHHHHHHHH
Confidence 86554 4679999999999999999999999999999999985 5667799999999999999999
Q ss_pred HHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001509 449 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 528 (1065)
Q Consensus 449 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 528 (1065)
.....-.+.. ... + ..+....+.+....++...|+.++=+.....+
T Consensus 507 ~~~~~~D~~~--~e~---------~-----------------------a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 507 EQIINPDGRN--AEA---------C-----------------------AWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred hcccCCCccc--hhh---------c-----------------------cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8865321100 000 0 11112223333333333333333222111111
Q ss_pred H----------------------------------------HH----------------------CCChH----HHHHHH
Q 001509 529 L----------------------------------------FK----------------------YQDYV----DAYLRL 542 (1065)
Q Consensus 529 l----------------------------------------~~----------------------~p~~~----~a~~~l 542 (1065)
+ .. ..-.. +....+
T Consensus 553 v~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~ 632 (895)
T KOG2076|consen 553 VDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFREL 632 (895)
T ss_pred HHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHH
Confidence 1 00 00001 233455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC--CCh----HHHHHhhhhhccccchHHHHHHHHHhhhcCCC-CChH---HHHhhH
Q 001509 543 AAIAKARNNLQLSIELVNEALKVNG--KYP----NALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSY---ATLSLG 612 (1065)
Q Consensus 543 a~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~~---~~~~lg 612 (1065)
..++.+.+.+.+|..++..++...- .+. .+.+....+-+..+++..|..+.+.++..... .+++ .|...-
T Consensus 633 i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~ 712 (895)
T KOG2076|consen 633 ILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDF 712 (895)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 6677888999999999988877541 222 34444555567788999999999988875221 1222 222111
Q ss_pred HHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcc-hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcch
Q 001509 613 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 691 (1065)
Q Consensus 613 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 691 (1065)
++ +... ++-.-=..++..++..+|.+ +......|..+...+.+.-|+..|.++....| ++|
T Consensus 713 s~-~~~~------------~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p-----d~P 774 (895)
T KOG2076|consen 713 SY-FSKY------------GQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP-----DSP 774 (895)
T ss_pred HH-HHHH------------HHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC-----CCc
Confidence 22 2222 44444455566677778887 55666668888899999999999999999998 667
Q ss_pred HHHHHHHHHHHH--cCC--------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC-
Q 001509 692 DVWINLAHVYFA--QGN--------FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN- 760 (1065)
Q Consensus 692 ~~~~~lg~~~~~--~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~- 760 (1065)
-+-+.+|..+.. +++ .-+++.++.+..+.-.....-++.|++|++|...|=..-|..+|++++.+.|.+
T Consensus 775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~ 854 (895)
T KOG2076|consen 775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDV 854 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccc
Confidence 777777766543 222 234555555544432112247899999999999999999999999999998754
Q ss_pred -----------cchHHHHHHHhhHHHHHH
Q 001509 761 -----------YTLRFDAGVAMQKFSAST 778 (1065)
Q Consensus 761 -----------~~~~~nla~~~~~~~~~~ 778 (1065)
..+.|||.++|+.-+...
T Consensus 855 ~~~~~d~~dLrkeAA~NL~LIY~~SGn~~ 883 (895)
T KOG2076|consen 855 TDPKEDNYDLRKEAAYNLHLIYKKSGNMQ 883 (895)
T ss_pred ccccCCcccHHHHHHhhhhhhhccCCcHH
Confidence 356788888877666533
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=6.8e-27 Score=286.19 Aligned_cols=442 Identities=13% Similarity=0.053 Sum_probs=357.5
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001509 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1065)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1065)
+.++.. ....|-++........+....|++++|+..|.++...+|....++..+|.++...|++.+|+.+|++++...|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445555 5566777777778888899999999999999999988899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1065)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1065)
.+ ..+++.+|.++...|++++|+..+++++..+|++.. +..+|.++...|+ +.+|+..+++++...|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99 677899999999999999999999999999999999 9999999999999 999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHH-----cCCH---HHHHHHHHHHHHhcCCCCCc---
Q 001509 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEF--- 341 (1065)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~--- 341 (1065)
++.++...+..+.|+..++.+...... ..........+.++... .+++ ++|+..|+.++...+..|..
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999999888866541100 00001122223333322 2345 78999999998765444433
Q ss_pred -hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 342 -IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 342 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
..+.+.....++..|++++|+..|++++...|..+ .+...+|.+|...|++++|+.+|++++...|.+..
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~-------- 307 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIAD-------- 307 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC--------
Confidence 22223223345678999999999999998864322 34444699999999999999999999988776521
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
........++.++...|++++|+.++.++....|....... .....|
T Consensus 308 ---~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~------------------------------~~~~~p 354 (765)
T PRK10049 308 ---LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG------------------------------SPTSIP 354 (765)
T ss_pred ---CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC------------------------------CCCCCC
Confidence 01134566777889999999999999999875431100000 001223
Q ss_pred c--hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhh
Q 001509 500 N--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577 (1065)
Q Consensus 500 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 577 (1065)
+ ...++..++.++...|++++|+..+++++...|.++.+++.+|.++...|++.+|+..+++++.++|+++.+++.++
T Consensus 355 ~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 355 NDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3 34678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchHHHHHHHHHhhhcCCC
Q 001509 578 DLELKNDDWVKAKETFRAASDATDG 602 (1065)
Q Consensus 578 ~~~~~~g~~~~A~~~~~~al~~~~~ 602 (1065)
.++...|++++|...++.++...|.
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998876
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=6.8e-27 Score=286.18 Aligned_cols=425 Identities=11% Similarity=-0.006 Sum_probs=347.7
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001509 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1065)
Q Consensus 89 La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1065)
...+....|+.. +|+..+.++...+|....++..+|.++...|++++|+.+|++++..+|.++.++..+
T Consensus 21 ~~~ia~~~g~~~-----------~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 21 WLQIALWAGQDA-----------EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred HHHHHHHcCCHH-----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344555566555 899999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchH
Q 001509 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1065)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1065)
|.++...|++.+|+..+++++...|++ .. ++.+|.++...|++++|+..|++++...|++..++..++.++...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~-- 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL-- 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--
Confidence 999999999999999999999999999 55 89999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH-----cCCH---HHHHHHHHHHHhccCCCCCc----hHHHHHH
Q 001509 249 GIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFFF-----TGQH---FLVEQLTETALAVTNHGPTK----SHSYYNL 311 (1065)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~----~~~~~~l 311 (1065)
.+.|+..+.++.. .|.... ....+..+.+. .+++ ++|+..++.++...+..|.. ..+....
T Consensus 166 -~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 166 -SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred -hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 8899999987765 544211 12222233322 2234 67888888888764444432 2222332
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHH
Q 001509 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYV 387 (1065)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~ 387 (1065)
...+...|++++|+..|++++...+..|... ...+|.+++..|++++|+.+|++++..+|.+ ......++.++.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 3345678999999999999987432224443 3446899999999999999999999888765 456777888899
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccch
Q 001509 388 QLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 467 (1065)
Q Consensus 388 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 467 (1065)
..|++++|+.+++++....|...................++..++.++...|++++|+..+++++.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------------- 387 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------------- 387 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 999999999999999998875432110000000001124677889999999999999999999987
Q ss_pred hhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001509 468 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 547 (1065)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 547 (1065)
..|.++.+++.+|.++...|++++|+..+++++..+|++..+++.+|.++.
T Consensus 388 -----------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 388 -----------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred -----------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 567789999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHH
Q 001509 548 ARNNLQLSIELVNEALKVNGKYPNALSM 575 (1065)
Q Consensus 548 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 575 (1065)
..|++++|...++.+++..|+++.+...
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999976653
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=1.6e-26 Score=276.63 Aligned_cols=361 Identities=12% Similarity=0.043 Sum_probs=276.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1065)
+.......+..++..|++..|+.++..++...|.++.++..+|.+....|++++|+..|++++..+|++ ..++..+|.+
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ-PEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence 445566778888899999999999999999999999999999999999999999999999999999999 6778999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001509 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1065)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1065)
+...|++++|+..|++++.++|+++.++..++.++...|+ +++|+..+.+++...|+++.++..++ .++..|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~---~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK---ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHH
Confidence 9999999999999999999999999999999999999998 99999999999999998887776654 3677788888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHH----HH
Q 001509 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS----AL 362 (1065)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~ 362 (1065)
|+..+..++...+. ........++.++...|++++|+..|.+++. ..|....+++.+|.++...|++++ |+
T Consensus 196 A~~~~~~~l~~~~~--~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 196 DHDLARALLPFFAL--ERQESAGLAVDTLCAVGKYQEAIQTGESALA---RGLDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred HHHHHHHHHhcCCC--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 88877777655321 1223344556677777777777777777776 345566677777777777777764 67
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 001509 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 442 (1065)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~ 442 (1065)
..|++++..+|+++.++..+|.++...|++++|+.++++++.++|+++ .++.++|.++...|+++
T Consensus 271 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---------------~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 271 EHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---------------YVRAMYARALRQVGQYT 335 (656)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHH
Confidence 777777777777777777777777777777777777777777777766 34566677777777777
Q ss_pred HHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHH
Q 001509 443 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 522 (1065)
Q Consensus 443 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 522 (1065)
+|+..|.+++. ..|.....+..+|.++...|++++|+
T Consensus 336 eA~~~l~~al~-------------------------------------------~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 336 AASDEFVQLAR-------------------------------------------EKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHHHHHHHHH-------------------------------------------hCccchHHHHHHHHHHHHCCCHHHHH
Confidence 77777777765 33444445555667777777777777
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 001509 523 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 567 (1065)
Q Consensus 523 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 567 (1065)
..|.+++..+|++. ...+.+|+..|..++...+
T Consensus 373 ~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 373 SVFEHYIQARASHL------------PQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcC
Confidence 77777777777653 2334456666666555543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1e-25 Score=269.80 Aligned_cols=381 Identities=13% Similarity=0.055 Sum_probs=329.6
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHH
Q 001509 140 AKGEVEQASSAFKIVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (1065)
.+.+|+.-.-+|...-+. ..++...+...+..+...|++.+|+.++..++...|.+ ..+++.+|.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 444554444444443322 23445566777888999999999999999999999999 77799999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001509 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1065)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (1065)
+..|++++..+|+++.++..+|.++...|+ +++|+..|.+++.++|.++.++..++.++...|++++|+..+..++.
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~---~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQ---YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999998877
Q ss_pred ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376 (1065)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 376 (1065)
.. |..+.++..++ .+...|++++|+..+..++...+ +........++.++...|++++|+..|.+++..+|+++
T Consensus 173 ~~---P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~ 246 (656)
T PRK15174 173 EV---PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA 246 (656)
T ss_pred hC---CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 64 44456665554 48899999999999999887432 22223445668899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 377 ETLKALGHIYVQLGQIEK----AQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452 (1065)
Q Consensus 377 ~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 452 (1065)
.++..+|.++...|++++ |+..|++++..+|++. .++.++|.++...|++++|+.++++++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999986 8999999999999987 478889999999999999999999999
Q ss_pred cccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001509 453 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 532 (1065)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 532 (1065)
. ..|.++.++.++|.++...|++++|+..|.+++..+
T Consensus 312 ~-------------------------------------------l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 312 A-------------------------------------------THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred H-------------------------------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8 567788999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcC
Q 001509 533 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 600 (1065)
Q Consensus 533 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 600 (1065)
|++...+..++.++...|++++|+..|++++...|++. ...|.+|+..|..++...
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhc
Confidence 99988888889999999999999999999999999875 234456666666666544
No 23
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-26 Score=247.48 Aligned_cols=453 Identities=13% Similarity=0.069 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1065)
+++|+....+++...|++..++..-..++...+.|+.|+.+.+.-.... ......+..+.|+++++..++|+..+.
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----VINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----hcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 6666666666666666666555555555555555555554443322110 011112566666677777777766666
Q ss_pred HHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1065)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 409 (1065)
.+ ++....+....|++++++|+|++|+.+|+.+++.+.+..+.......+..... -.+ . ..+.....|.+
T Consensus 104 -~~-----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~ 173 (652)
T KOG2376|consen 104 -GL-----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPED 173 (652)
T ss_pred -cc-----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcc
Confidence 11 12223345556677777777777777777766655544443333222211110 000 0 22222233322
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcc
Q 001509 410 AQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 489 (1065)
Q Consensus 410 ~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (1065)
+-+.++|.++++...|+|.+|++.+.+++.+|...-..+...
T Consensus 174 --------------syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~------------------------ 215 (652)
T KOG2376|consen 174 --------------SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN------------------------ 215 (652)
T ss_pred --------------hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc------------------------
Confidence 237899999999999999999999999987654221111100
Q ss_pred cCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHH----HHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q 001509 490 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQ-LSIELVNEALK 564 (1065)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~la~~~~~~g~~~-~A~~~~~~al~ 564 (1065)
.-+.......+..+++.++..+|+..+|..+|..++..+|.+.. +-++|..+-....=++ .++..++....
T Consensus 216 ----eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 216 ----EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF 291 (652)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHH
Confidence 00122335678899999999999999999999999998886643 3333332222111111 12222222221
Q ss_pred HCC----------CChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhH
Q 001509 565 VNG----------KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 634 (1065)
Q Consensus 565 ~~p----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 634 (1065)
..+ ....++.+.+.+.+..+....+.+.....-...|..-...+ +-.. +... ...+
T Consensus 292 ~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-----------~~~~ 357 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-----------EKKH 357 (652)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH-----------HHHH
Confidence 111 12235556666666667666666666554333333221121 1111 1111 1468
Q ss_pred HHHHHHHHHHHhhCCcc-hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHcCCHHHHH
Q 001509 635 EKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFALAM 711 (1065)
Q Consensus 635 ~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~lg~~~~~~g~~~~A~ 711 (1065)
.+|..++......+|.+ ......++++.+.+|++..|+.++..++..-..+ .....|.+-..+-..|+..+..+.|.
T Consensus 358 ~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~ 437 (652)
T KOG2376|consen 358 KKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSAS 437 (652)
T ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHH
Confidence 89999999999999997 6788889999999999999999999544221100 00134455555556677888888888
Q ss_pred HHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhh
Q 001509 712 KMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 772 (1065)
Q Consensus 712 ~~~~~al~~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~ 772 (1065)
..+..++.-|..... ..++..++..-.+.|+-++|...++.+++.+|++..+.-.+..++.
T Consensus 438 ~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 438 AVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 999998887654432 3444556666777799999999999999999999887755554433
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-25 Score=233.11 Aligned_cols=238 Identities=16% Similarity=0.158 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 455 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (1065)
..++...|..++-.|++-.|...|+.++.++|.+. ..|..++.+|....+..+-...|.++..
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~---------------~lyI~~a~~y~d~~~~~~~~~~F~~A~~-- 388 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN---------------SLYIKRAAAYADENQSEKMWKDFNKAED-- 388 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc---------------hHHHHHHHHHhhhhccHHHHHHHHHHHh--
Confidence 56777788888888999999999999999998876 3577889999999999999999999887
Q ss_pred chhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh
Q 001509 456 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 535 (1065)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 535 (1065)
++|.++.+|+..|.++.-++++++|+.-|++++.++|++
T Consensus 389 -----------------------------------------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 389 -----------------------------------------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred -----------------------------------------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCC-----hHHHHh
Q 001509 536 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD-----SYATLS 610 (1065)
Q Consensus 536 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d-----~~~~~~ 610 (1065)
+-++..++...++++.+.++...|+.+....|+.++++...+.++..++++++|.+.|.+++.+.|..+ +..++.
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999998876521 222222
Q ss_pred hHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 001509 611 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 611 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
-+-+.+... +++..|+.++.++++++|....++.++|++..++|+.++|+++|++...+..
T Consensus 508 Ka~l~~qwk------------~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 508 KALLVLQWK------------EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhHhhhchh------------hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 232211122 8999999999999999999999999999999999999999999999987763
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.5e-25 Score=226.66 Aligned_cols=469 Identities=17% Similarity=0.176 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHhhc--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHH
Q 001509 109 HFILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSDS 181 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A 181 (1065)
-+.+|+..|+-.++. .|+....-+.+|.+++++.+|.+|+.+|+.++..-|.- ...+..+|..+.+.|.|+.|
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 344888888876643 46666777889999999999999999999999888752 45677888889999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHccch
Q 001509 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD--------------PENVEALVALAVMDLQANEA 247 (1065)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~a~~~la~~~~~~~~~ 247 (1065)
+..|..++...|+. .+-+++..|++..|+-++-.+.|.+++.+- |++.-....+-.-+++.-..
T Consensus 296 insfdh~m~~~pn~--~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEEAPNF--IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHhCccH--HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 99999999999988 335778889999999999999999998751 11111111111111111000
Q ss_pred HhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001509 248 AGIRKGMEKMQRAFEI-YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1065)
Q Consensus 248 ~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1065)
.+-..|.+.+..+.++ .|-- .-+|...-.++-..++.+...+...+.-.+.+..+.+.|+++.|++
T Consensus 374 ~~ka~aek~i~ta~kiiapvi-------------~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVI-------------APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred hhhhhHHHHHHHHHHHhcccc-------------ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 0011111222111111 1100 0000011111111222111122222333444455555555555555
Q ss_pred HHHHHHHhcCCCCCchhhhhhHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 327 YYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 327 ~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
.+.-.-+. .+.....+-.++..+++.+ .++..|..+...++.++.-++.++.+.|.+.+..|++++|...|+.++.
T Consensus 441 ilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 441 ILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 54433321 1111122233333333332 2455555555555555555555555555555555555555555555554
Q ss_pred hCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhh
Q 001509 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 484 (1065)
Q Consensus 405 ~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1065)
.+.... +.++|+|..+..+|+.++|+.+|-+.-.+
T Consensus 519 ndasc~---------------ealfniglt~e~~~~ldeald~f~klh~i------------------------------ 553 (840)
T KOG2003|consen 519 NDASCT---------------EALFNIGLTAEALGNLDEALDCFLKLHAI------------------------------ 553 (840)
T ss_pred CchHHH---------------HHHHHhcccHHHhcCHHHHHHHHHHHHHH------------------------------
Confidence 433332 34555555555555555555555443321
Q ss_pred hhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 485 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 564 (1065)
Q Consensus 485 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 564 (1065)
--+++.++++++.+|..+.+..+|+++|-++...-|+++..+..|+.+|-+.|+..+|..++-....
T Consensus 554 -------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr 620 (840)
T KOG2003|consen 554 -------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR 620 (840)
T ss_pred -------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc
Confidence 1124455555555555555555555555555555555555555555555555555555555555555
Q ss_pred HCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHH
Q 001509 565 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 644 (1065)
Q Consensus 565 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 644 (1065)
..|.+.++.-.|+..|+...-+++|+.+|+++.-+.|....+- +.++.+ +... |+|.+|..+|+..
T Consensus 621 yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq-lmiasc-~rrs------------gnyqka~d~yk~~ 686 (840)
T KOG2003|consen 621 YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ-LMIASC-FRRS------------GNYQKAFDLYKDI 686 (840)
T ss_pred ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH-HHHHHH-HHhc------------ccHHHHHHHHHHH
Confidence 5555555555555555555555555555555544443322111 122333 4443 5555555555555
Q ss_pred HhhCCcchHHHhHHHHHHHhcC
Q 001509 645 IVQHTSNLYAANGAGVVLAEKG 666 (1065)
Q Consensus 645 l~~~p~~~~a~~~la~~~~~~g 666 (1065)
-...|.+...+-.|..+....|
T Consensus 687 hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 687 HRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHhCccchHHHHHHHHHhcccc
Confidence 5555555555555544444443
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.3e-24 Score=222.88 Aligned_cols=430 Identities=17% Similarity=0.166 Sum_probs=311.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
.+-.+|+-++..|+|++|+.+|..+|...|+.+..+.+++.||...|+|++.++...++++++|+. .-+++..+..+..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHh
Confidence 445578888888888888888888888888888888888888888888888888888888888888 6778888888888
Q ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Q 001509 210 LGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFFTGQHFL 286 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~ 286 (1065)
+|++.+|+....-.--+ +-.+......+-.++-.+ |+.....-+. ..|.-|.+.+ ++.++..-..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~--------a~~ka~e~~k~nr~p~lPS~~f-i~syf~sF~~--- 263 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ--------AMKKAKEKLKENRPPVLPSATF-IASYFGSFHA--- 263 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH--------HHHHHHHhhcccCCCCCCcHHH-HHHHHhhccc---
Confidence 88888888665532211 122222222222333222 3333333333 1222222211 1111100000
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCC-CC---------chhhhhhHHHHHH
Q 001509 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKP-HE---------FIFPYYGLGQVQL 353 (1065)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~-~~---------~~~~~~~la~~~~ 353 (1065)
............+.+-..-+.-++..+ .|..|...+.+........ .. .+.++...|..++
T Consensus 264 ------~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 264 ------DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred ------cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 000000000111222222222222233 5677777666655422111 11 1456777888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
-.|++..|...|..++.++|.+...|..++.+|...++.++....|.++..++|.++ .+|+..|.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~---------------dvYyHRgQ 402 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP---------------DVYYHRGQ 402 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC---------------chhHhHHH
Confidence 999999999999999999999888899999999999999999999999999999998 57999999
Q ss_pred HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 513 (1065)
+++-.+++++|+.-|++++. ++|.++..+.+++.+..
T Consensus 403 m~flL~q~e~A~aDF~Kai~-------------------------------------------L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAIS-------------------------------------------LDPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhh-------------------------------------------cChhhhHHHHHHHHHHH
Confidence 99999999999999999988 67788899999999999
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------ChHHHHHhhhhhcc-ccch
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------YPNALSMLGDLELK-NDDW 586 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~-~g~~ 586 (1065)
+++++.++...|+.+....|+.++++...|.++..+++++.|++.|..++.+.|. ++..+...+.+.++ .+++
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhH
Confidence 9999999999999999999999999999999999999999999999999999988 55444444433332 3789
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc
Q 001509 587 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 650 (1065)
Q Consensus 587 ~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 650 (1065)
..|...+.++++..|. ...++..||.+ -.+. |+.++|+++|++++.+--.
T Consensus 520 ~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~-~lQ~------------~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPK-CEQAYETLAQF-ELQR------------GKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHccCch-HHHHHHHHHHH-HHHH------------hhHHHHHHHHHHHHHHHHh
Confidence 9999999999998876 66788889988 7777 9999999999998776443
No 27
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.95 E-value=5.8e-23 Score=230.70 Aligned_cols=578 Identities=16% Similarity=0.098 Sum_probs=439.1
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1065)
+...|+..|-++++++|....+|..+|.+|....+...|..+|+++..++|.++.++-..+..|....+++.|....-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred HHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC
Q 001509 189 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1065)
Q Consensus 189 l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1065)
-+..|.. ....|..+|..|...+++..|+..|+.+++.+|.+..+|..+|..|...|. +..|++.|.++..++|.+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcHh
Confidence 7766654 233466699999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC----CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CC-
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTN----HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KP- 338 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~- 338 (1065)
..+.+..+.+....|.|.+++..+...+.... .....++.+..++..++..|-+.+|..++++.+..+. ..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988875421 1224567777888888888888888888877765321 00
Q ss_pred CCchhhhhhHHHHHHH-----------------------cCCH------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001509 339 HEFIFPYYGLGQVQLK-----------------------LGDF------RSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1065)
Q Consensus 339 ~~~~~~~~~la~~~~~-----------------------~g~~------~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1065)
......|..+|....- ++.. --+.+++-..++.- ..+..|+++|..|++.
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHH
Confidence 1111112222211111 1111 12333333333322 2366788898888872
Q ss_pred --------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhc
Q 001509 390 --------GQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 461 (1065)
Q Consensus 390 --------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 461 (1065)
.+...|+.++.+++++..++. ..|+.+|.+ ...|++.-|..+|-+++.
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~---------------~~WnaLGVl-sg~gnva~aQHCfIks~~-------- 844 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNE---------------GLWNALGVL-SGIGNVACAQHCFIKSRF-------- 844 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccH---------------HHHHHHHHh-hccchhhhhhhhhhhhhh--------
Confidence 344589999999999988877 578888888 667899999999988876
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHH
Q 001509 462 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 541 (1065)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 541 (1065)
..|.....|.|+|.++....+++.|...+..+..++|.+...|..
T Consensus 845 -----------------------------------sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 845 -----------------------------------SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred -----------------------------------ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 566788899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---C--hHHHHHhhhhhccccchHHHHHHHHHhhhc---------CCCCChHH
Q 001509 542 LAAIAKARNNLQLSIELVNEALKVNGK---Y--PNALSMLGDLELKNDDWVKAKETFRAASDA---------TDGKDSYA 607 (1065)
Q Consensus 542 la~~~~~~g~~~~A~~~~~~al~~~p~---~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~~~~d~~~ 607 (1065)
.+.+....|+.-++...|.-...++.. . ...|..-...+..+|+++.-+...+++-.. ..+....+
T Consensus 890 ~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fA 969 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFA 969 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHH
Confidence 999999999999999999885554422 2 235555666677788877666665544321 12235566
Q ss_pred HHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhh-----CC-cchHHHhHHHHHHHhcCCcHHHHHHHHHHHHH
Q 001509 608 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-----HT-SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 681 (1065)
Q Consensus 608 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 681 (1065)
+...|.. .... +.+..|...+.+++.+ +. .+..+--..|.+++..|+++.|...+......
T Consensus 970 y~~~gst-lEhL------------~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 970 YAANGST-LEHL------------EEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHHhH-HHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 6666655 5555 7777777777765543 11 12336667788999999999776655433221
Q ss_pred hcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 682 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 682 ~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
. +.++ .......+-.|+|.++.+.|++++.......+ +.++-.++.+....+..+.|...+-+++.+.|.+
T Consensus 1037 v-------dEdi-~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~ 1108 (1238)
T KOG1127|consen 1037 V-------DEDI-RGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQ 1108 (1238)
T ss_pred H-------HHHH-hhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccc
Confidence 1 1111 11122236679999999999999988555555 5667778888888999999999999999999888
Q ss_pred cchHHHHHHH
Q 001509 761 YTLRFDAGVA 770 (1065)
Q Consensus 761 ~~~~~nla~~ 770 (1065)
....+-|+-+
T Consensus 1109 ~~sll~L~A~ 1118 (1238)
T KOG1127|consen 1109 ASSLLPLPAV 1118 (1238)
T ss_pred hhhHHHHHHH
Confidence 7766666543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=3.4e-24 Score=220.21 Aligned_cols=464 Identities=19% Similarity=0.210 Sum_probs=276.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch----HHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG----AIRLG 202 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~----~~~~~ 202 (1065)
.+++.++..|.....+.+|+..|+-+++. .|+....-..+|.++++..+|.+|+++|+.++..-|.... .++.+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 46788899999889999999999988753 5766677788999999999999999999999998887633 34567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhC--------------CCCH
Q 001509 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------------PYCA 268 (1065)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--------------p~~~ 268 (1065)
+|..+.+.|.|+.|+..|+.+++..|+.. +-++|..+++..|+ .++-.+.|.+++.+. |++.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 88899999999999999999999999654 45567777888888 666666677776542 1111
Q ss_pred HHHHHHHHHHH-H--cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 001509 269 MALNYLANHFF-F--TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1065)
Q Consensus 269 ~~~~~la~~~~-~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1065)
.+-..+-+-++ . ..+...|.+..-.+.+... |.. .-+|.-.-.++-..++.....+.....-
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi-------------~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVI-------------APDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccc-------------ccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 11111110000 0 1111112222222221110 000 0011111111111111111111122233
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCC
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQARTLLKKAGEE 422 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 422 (1065)
.+.+-.+++.|+++.|++++.-.-+.+... ..+-.+|..+++.+| ++..|..+...++.++.-++
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~------------ 490 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA------------ 490 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH------------
Confidence 455666677777777777665444433222 234445555555543 56667777777766665555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchh
Q 001509 423 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 502 (1065)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 502 (1065)
..+.|.|.+.+..|++++|...|++++. .+....
T Consensus 491 ---~a~~nkgn~~f~ngd~dka~~~ykeal~-------------------------------------------ndasc~ 524 (840)
T KOG2003|consen 491 ---AALTNKGNIAFANGDLDKAAEFYKEALN-------------------------------------------NDASCT 524 (840)
T ss_pred ---HHhhcCCceeeecCcHHHHHHHHHHHHc-------------------------------------------CchHHH
Confidence 3455667777777777777777777765 334456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhcc
Q 001509 503 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 582 (1065)
Q Consensus 503 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 582 (1065)
.+++++|..+..+|+.++|+.+|-++-.+--+++.++..++.+|....++.+|++++.++..+-|++|.++..|+.+|-+
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 67777777777777777777777766666666677777777777777777777777777777777777777777777666
Q ss_pred ccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHH
Q 001509 583 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 662 (1065)
Q Consensus 583 ~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 662 (1065)
.|+-.+|..++-....-+|. .....-.||.. |... .-.++|+.+|+++.-+.|+.......++.++
T Consensus 605 egdksqafq~~ydsyryfp~-nie~iewl~ay-yidt------------qf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPC-NIETIEWLAAY-YIDT------------QFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred ccchhhhhhhhhhcccccCc-chHHHHHHHHH-HHhh------------HHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 66666666655544443333 33333344444 4444 4445555555555444454444444444444
Q ss_pred HhcCCcHHHHHHHHHHHHHhc
Q 001509 663 AEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~p 683 (1065)
.+.|+|..|.++|..+-...|
T Consensus 671 rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCc
Confidence 444444444444444444443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=8.9e-23 Score=243.67 Aligned_cols=453 Identities=11% Similarity=0.009 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
|++..|+..|.++++.+|.++.....++.++...|++++|+..+++++...|.....+..+|.++...|+|+.|+.+|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34459999999999999999755558888999999999999999999944455566666678899999999999999999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC
Q 001509 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1065)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1065)
++..+|++ +.+++.++.++...++.++|+..+.+++..+|.+... ..++.++...++ ..+|+..+++++..+|++
T Consensus 128 aL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 128 SLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCCCC
Confidence 99999999 7778899999999999999999999999999986554 555555554444 666999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc---------C---CHHHHHHHHHHHHHhc
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK---------G---DYEKAGLYYMASVKEI 335 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~---------g---~~~~A~~~~~~al~~~ 335 (1065)
..++..+..++...|-...|.++...--..... ..........+.-..+. . -.+.|+.-++.++...
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998887753222110 01111111111112211 1 2456777777777644
Q ss_pred CCCCC----chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 336 NKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 336 ~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 410 (1065)
+..|. ...+.+..-.++...|++.+++..|+.+.... |--..+....|..|+..++.++|+.+|..++.-.|...
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 44342 34455667778889999999999999987544 22456888899999999999999999999988664210
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccch-hhhcccccchhhhhhhhhHHHhhhhhhhhhcc
Q 001509 411 QARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 489 (1065)
Q Consensus 411 ~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (1065)
...........|...|...+++++|..++.+.....|+ ......
T Consensus 362 ---------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~-------------------------- 406 (822)
T PRK14574 362 ---------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL-------------------------- 406 (822)
T ss_pred ---------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC--------------------------
Confidence 00111123456778899999999999999999875442 110100
Q ss_pred cCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 001509 490 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 569 (1065)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 569 (1065)
.....+|+.......++.++...|++.+|...++.++...|.+...++.+|.++...|.+..|...++.+..++|.+
T Consensus 407 ---~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 407 ---PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred ---CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 11125677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCC
Q 001509 570 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 604 (1065)
Q Consensus 570 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d 604 (1065)
..+...++.++...++|.+|......++...|...
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999999999999999888743
No 30
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=2.6e-21 Score=237.58 Aligned_cols=543 Identities=12% Similarity=0.016 Sum_probs=420.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1065)
.+..+++....-.+ +...++.+-..+.+.|++..|+.+|+.+...+. .+...+..+...+...|...+|+.+|....
T Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 355 NSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 34455555444333 445566666777789999999999999987653 344445556667888999999999988765
Q ss_pred HhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC-CC
Q 001509 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YC 267 (1065)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~ 267 (1065)
. |+ ...+..+..++...|+++.|...|..+.+... .+...+..+...+.+.|+ ++.|...|..+..... .+
T Consensus 434 ~--pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 434 N--PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred C--CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCC
Confidence 4 54 46677888888999999999999999988654 367788899999999999 9999999999987653 37
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCCCchhhhh
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE-INKPHEFIFPYY 346 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~ 346 (1065)
..+|..+...|...|++++|..+|..+.... ...+...|..+...|.+.|++++|..+|..+... .+..|+ ...+.
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyn 583 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVG 583 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHH
Confidence 8899999999999999999999999987653 2335678999999999999999999999999753 112233 45688
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHcCCCC
Q 001509 347 GLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQARTLLKKAGEEV 423 (1065)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~ 423 (1065)
.+..+|.+.|++++|..+|+.+.+.. +.+..+|..+...|.+.|++++|+.+|..+... .|+.
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-------------- 649 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-------------- 649 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--------------
Confidence 88899999999999999999999875 456889999999999999999999999998875 3432
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 424 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
.+|+.+...+...|++++|..+|..+...+ .+.+..
T Consensus 650 --~TynsLI~a~~k~G~~eeA~~l~~eM~k~G------------------------------------------~~pd~~ 685 (1060)
T PLN03218 650 --VFFSALVDVAGHAGDLDKAFEILQDARKQG------------------------------------------IKLGTV 685 (1060)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------------------------------------CCCCHH
Confidence 478888999999999999999999988642 122567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCChHHHHHhhhhh
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLE 580 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 580 (1065)
++..+...|.+.|++++|..+|..+... .| +..+|..+...|.+.|++++|.++|..+.... ..+...|..+...+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8899999999999999999999998753 34 47789999999999999999999999987653 23556777777899
Q ss_pred ccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 581 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 581 ~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
.+.|+++.|..+|..+++....++...+..+..+ +. +.+++|......++..++.++
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~-------- 821 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRP-------- 821 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhcccc--------
Confidence 9999999999999999998777777766665443 21 446677766666655443322
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 001509 661 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 740 (1065)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~ 740 (1065)
....+....|+.+|+++++..- . .+..++..+-.|+...+....+..+++... ..+..++..++..+-..+
T Consensus 822 -~~~n~w~~~Al~lf~eM~~~Gi---~-Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~--- 892 (1060)
T PLN03218 822 -QIENKWTSWALMVYRETISAGT---L-PTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF--- 892 (1060)
T ss_pred -ccccchHHHHHHHHHHHHHCCC---C-CCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---
Confidence 2223445679999999998652 1 245566666677777788887777776533 223444455555555554
Q ss_pred hc-HHHHHHHHHHHHHh
Q 001509 741 EQ-WQDCKKSLLRAIHL 756 (1065)
Q Consensus 741 g~-~~~A~~~~~kal~~ 756 (1065)
|+ ..+|...|+.+...
T Consensus 893 ~~~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 893 GEYDPRAFSLLEEAASL 909 (1060)
T ss_pred ccChHHHHHHHHHHHHc
Confidence 43 35799999999886
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=3.1e-22 Score=239.00 Aligned_cols=465 Identities=11% Similarity=0.004 Sum_probs=371.6
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
++--..-..|..+...+..+.+.++.|++..|+..|.++++.+|.++.+...++.++...|++.+|+.++++++...|..
T Consensus 22 ~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~ 101 (822)
T PRK14574 22 LFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS 101 (822)
T ss_pred HHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC
Confidence 33334456789999999999999999999999999999999999997666688888999999999999999999333333
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1065)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 275 (1065)
...+..+|.++...|++++|+..|+++++.+|+++.++..++.++...++ ..+|+..+.++...+|.+... ..++
T Consensus 102 -~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~la 176 (822)
T PRK14574 102 -SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLS 176 (822)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHH
Confidence 34445558899999999999999999999999999999999999999988 999999999999999986665 5566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1065)
.++...+++.+|+..+++++.. .|.+..++..+..++...|-...|.....+-...+ .+.+........+.-.++.
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~ 252 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRM 252 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhh
Confidence 6666678887799999999988 47778999999999999999999987776543222 1112112222222222222
Q ss_pred C------------CHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001509 356 G------------DFRSALTNFEKVLEIY---PDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL 416 (1065)
Q Consensus 356 g------------~~~~A~~~~~~~l~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 416 (1065)
+ -.+.|+..++.++... |.. ..+..-.-.++...|++.+++..|+.+....
T Consensus 253 a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~---------- 322 (822)
T PRK14574 253 AVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG---------- 322 (822)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC----------
Confidence 2 2456778888888743 432 2344456667778899999999999866443
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcC
Q 001509 417 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 496 (1065)
Q Consensus 417 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 496 (1065)
...|+-+...+|..|...++.++|+.+|..++...+. ..
T Consensus 323 ----~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~-------------------------------------~~ 361 (822)
T PRK14574 323 ----YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK-------------------------------------TF 361 (822)
T ss_pred ----CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc-------------------------------------cc
Confidence 2223356777899999999999999999998763210 00
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC---------------ChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---------------DYVDAYLRLAAIAKARNNLQLSIELVNE 561 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~la~~~~~~g~~~~A~~~~~~ 561 (1065)
..+........|...|...+++++|..++..+....| ++.++...++.++...|++.+|.+.++.
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1223444456788889999999999999999987433 4567888899999999999999999999
Q ss_pred HHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHH
Q 001509 562 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 641 (1065)
Q Consensus 562 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 641 (1065)
++...|.++.++..++.++...|.+..|...++.+....|. +..+...+|.+ +... +++.+|....
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~-al~l------------~e~~~A~~~~ 507 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAET-AMAL------------QEWHQMELLT 507 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHH-HHhh------------hhHHHHHHHH
Confidence 99999999999999999999999999999999888877555 78888889988 8888 9999999999
Q ss_pred HHHHhhCCcchHH
Q 001509 642 TRVIVQHTSNLYA 654 (1065)
Q Consensus 642 ~~~l~~~p~~~~a 654 (1065)
..++...|++...
T Consensus 508 ~~l~~~~Pe~~~~ 520 (822)
T PRK14574 508 DDVISRSPEDIPS 520 (822)
T ss_pred HHHHhhCCCchhH
Confidence 9999999998743
No 32
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.93 E-value=1.5e-20 Score=230.93 Aligned_cols=528 Identities=12% Similarity=0.036 Sum_probs=321.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHH
Q 001509 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYN 118 (1065)
Q Consensus 39 ~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~ 118 (1065)
+...++.+-..+++.|++.+|+.+|+.+...+..+ .....+..+..++...|... .|..+|.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-------~~~v~~~~li~~~~~~g~~~-----------eAl~lf~ 430 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-------MDKIYHAKFFKACKKQRAVK-----------EAFRFAK 430 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-------chHHHHHHHHHHHHHCCCHH-----------HHHHHHH
Confidence 34556666667777788888888887775443211 12223344445555555544 6777776
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 001509 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1065)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1065)
.+.. | +..+|..+...+...|+++.|..+|..+.+... .+...+..+...|.+.|+++.|..+|..+.........
T Consensus 431 ~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 431 LIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred HcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 6543 3 556677777777777888888888877776543 35666777777777778888888887777765533224
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHh----CCCCHHHH
Q 001509 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLD--PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI----YPYCAMAL 271 (1065)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~ 271 (1065)
.+|..+...|.+.|++++|...|..+.... | +...|..+...+.+.|+ +++|...+..+... .| +..++
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~---~deA~~lf~eM~~~~~gi~P-D~vTy 582 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGA---VDRAFDVLAEMKAETHPIDP-DHITV 582 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhcCCCCC-cHHHH
Confidence 567777777777788888887777776543 3 45667777777777777 77777777777652 23 35567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHH
Q 001509 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1065)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1065)
..+...|...|++++|..++..+.... .+.....|..+...|.+.|++++|+.+|..+.... ..|+ ...+..+...
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD-~~TynsLI~a 658 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPD-EVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-HHHHHHHHHH
Confidence 777777777777777777777776542 23345677777777777777777777777776532 1222 3456667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHcCCCCCHHHH
Q 001509 352 QLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQARTLLKKAGEEVPIEVL 428 (1065)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~~~ 428 (1065)
+.+.|++++|..+|..+.+.. +.+..++..+...|.+.|++++|..+|+.+... .|+. .+|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv----------------vty 722 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV----------------STM 722 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----------------HHH
Confidence 777777777777777777643 234667777777777777777777777766542 2322 357
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHH
Q 001509 429 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 508 (1065)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 508 (1065)
+.+...|.+.|++++|+.+|.++...+ ..| +..++..+
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~G-----------------------------------------i~P-d~~Ty~sL 760 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLG-----------------------------------------LCP-NTITYSIL 760 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-----------------------------------------CCC-CHHHHHHH
Confidence 777777777777777777777765422 222 34455566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccch
Q 001509 509 ARLLEQIHDTVAASVLYRLILFKY--QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 586 (1065)
Q Consensus 509 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 586 (1065)
...+...|+++.|..++..+++.. |+ ...+..+..++. +.+.+|.......+..++ +......+..
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLIglc~--~~y~ka~~l~~~v~~f~~---------g~~~~~n~w~ 828 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCL--RRFEKACALGEPVVSFDS---------GRPQIENKWT 828 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc---------cccccccchH
Confidence 667777777777777777776533 33 333333322222 234555444443333322 2222222334
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHh-hCCcchHHHhHHHHHHHhc
Q 001509 587 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV-QHTSNLYAANGAGVVLAEK 665 (1065)
Q Consensus 587 ~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~a~~~la~~~~~~ 665 (1065)
..|..+|++++...-.++..++..+..+ +... +....+..++..... -.+.+...++.+...+
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c-l~~~------------~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--- 892 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGC-LQLP------------HDATLRNRLIENLGISADSQKQSNLSTLVDGF--- 892 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-hccc------------ccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---
Confidence 5577777777766555555555544444 3333 444555555543221 1222344444444433
Q ss_pred CC-cHHHHHHHHHHHHHh
Q 001509 666 GQ-FDVSKDLFTQVQEAA 682 (1065)
Q Consensus 666 g~-~~~A~~~~~~~~~~~ 682 (1065)
|+ ..+|..+|+.+....
T Consensus 893 ~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 893 GEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred ccChHHHHHHHHHHHHcC
Confidence 22 246777777666654
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.7e-23 Score=217.41 Aligned_cols=288 Identities=14% Similarity=0.138 Sum_probs=250.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchh
Q 001509 423 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 502 (1065)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 502 (1065)
....++...+..++..++|.+....+...++. +|...
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-------------------------------------------dpfh~ 278 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-------------------------------------------DPFHL 278 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-------------------------------------------CCCCc
Confidence 34577888899999999999999999998873 33344
Q ss_pred HH-HHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhc
Q 001509 503 TV-LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 581 (1065)
Q Consensus 503 ~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 581 (1065)
.+ -+.+| ++..+|+..+-..+-.+++..+|+.+-.|+.+|..|...|++.+|.++|.++..++|....+|..+|..+.
T Consensus 279 ~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa 357 (611)
T KOG1173|consen 279 PCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA 357 (611)
T ss_pred chHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh
Confidence 44 44555 88888999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHH
Q 001509 582 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 661 (1065)
Q Consensus 582 ~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~ 661 (1065)
..|+.++|+..|..+.+..+.... ..+-+|-- |... ++++.|..+|.+++.+.|.++..++.+|.+
T Consensus 358 ~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgme-y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARLMPGCHL-PSLYLGME-YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVV 423 (611)
T ss_pred hcchHHHHHHHHHHHHHhccCCcc-hHHHHHHH-HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhhe
Confidence 999999999999999998776322 23335555 7777 999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 001509 662 LAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 739 (1065)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~ 739 (1065)
....+.|.+|..+|+.++...+.. ..+.....+.||||+|.+++.+.+||..|+++|.. .+.++.++-.+|.+|..
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHL 501 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHH
Confidence 999999999999999999655421 11135567999999999999999999999999998 67788999999999999
Q ss_pred hhcHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 001509 740 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 740 ~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
.|+++.|+.+|.+++-+.|+|..+.--|..+
T Consensus 502 lgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999998777555544
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-22 Score=215.02 Aligned_cols=461 Identities=18% Similarity=0.159 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
...|..|+-+-+++..+. .+|.-.+.+|.+++..|++..|..+...- .....+..+.+..+.++....+++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778888889988887 78888888999999999999998777654 5666788899999999999999999999888
Q ss_pred HH------HHhCCCC------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1065)
Q Consensus 187 ~a------l~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1065)
.. +..+|.+ ...+.+..|.+|..+.++++|...|..++..++.+.++...+....+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 43 1111111 12234556677777777777777777777777777776666554444
Q ss_pred HccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCH
Q 001509 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1065)
Q Consensus 243 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1065)
.... +-...+.. ++- +. ..+...+ ...+|+-.+....+.+ .....++
T Consensus 187 lt~~-----Ee~~ll~~---l~~---------a~---~~~ed~e~l~~lyel~~~k~~n~~-----------~~~r~~~- 234 (611)
T KOG1173|consen 187 LTAQ-----EEFELLES---LDL---------AM---LTKEDVERLEILYELKLCKNRNEE-----------SLTRNED- 234 (611)
T ss_pred cchh-----HHHHHHhc---ccH---------Hh---hhhhHHHHHHHHHHhhhhhhcccc-----------ccccCch-
Confidence 3311 11111110 000 00 0000000 0111110000000000 0000000
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1065)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (1065)
..+. .-..........+..++..+++.+...+++.+++.+|-++.++.....++...|+..+-..+-.+
T Consensus 235 --------~sl~---~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~ 303 (611)
T KOG1173|consen 235 --------ESLI---GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHK 303 (611)
T ss_pred --------hhhh---hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHH
Confidence 0010 11334456777889999999999999999999999999887777666699999999888888889
Q ss_pred HHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhh
Q 001509 402 AAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 481 (1065)
Q Consensus 402 al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1065)
+.+..|+.+ -.|+.+|+.|...|++.+|..+|.++..
T Consensus 304 LV~~yP~~a---------------~sW~aVg~YYl~i~k~seARry~SKat~---------------------------- 340 (611)
T KOG1173|consen 304 LVDLYPSKA---------------LSWFAVGCYYLMIGKYSEARRYFSKATT---------------------------- 340 (611)
T ss_pred HHHhCCCCC---------------cchhhHHHHHHHhcCcHHHHHHHHHHhh----------------------------
Confidence 999999987 4799999999999999999999999987
Q ss_pred hhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 482 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 561 (1065)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 561 (1065)
.+|....+|...|..|...|..++|+..|..+-+..|......+.+|.-|...+++..|..+|.+
T Consensus 341 ---------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 341 ---------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred ---------------cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 66778899999999999999999999999999999999888888899999999999999999999
Q ss_pred HHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCC----C--ChHHHHhhHHHHHHHHHhhhhcChhHHhhhHH
Q 001509 562 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG----K--DSYATLSLGNWNYFAALRNEKRAPKLEATHLE 635 (1065)
Q Consensus 562 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~--d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 635 (1065)
++.+.|.+|.++.-+|.+.+..+.|.+|..+|+.++...+. . -...+..||.+ |... +.++
T Consensus 406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~-~Rkl------------~~~~ 472 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA-YRKL------------NKYE 472 (611)
T ss_pred HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH-HHHH------------hhHH
Confidence 99999999999999999999999999999999999853222 1 22357789998 8888 9999
Q ss_pred HHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 001509 636 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 636 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
+|+.+|+++|.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999887
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-21 Score=202.51 Aligned_cols=441 Identities=17% Similarity=0.170 Sum_probs=345.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh------hhhhHHHHHHHHH
Q 001509 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK------QREKEEHFILATQ 115 (1065)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~------~~~k~~~~~~A~~ 115 (1065)
..+.+|..|+....++.|.-.|+...+.. ...+...+.+.....+.... ...+...-...+.
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s~k------------~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~ 147 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKSKK------------SAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELI 147 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcchHH------------HHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHH
Confidence 45789999999999999999998874421 11111111111111000000 0001111223344
Q ss_pred HHHHHhhc----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001509 116 YYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 116 ~~~~a~~~----~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
.+++-++. ...++..++..|.++...|....|+..|..++...|-+-.+|+.++.+... +.........
T Consensus 148 ~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~ 220 (559)
T KOG1155|consen 148 ELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVG 220 (559)
T ss_pred HHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhc
Confidence 44443332 234577888999999999999999999999999999999999998876432 3333333333
Q ss_pred CCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHH
Q 001509 192 HPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 192 ~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
-|. .....-+.++.++..+...++++.-++..+.. .|.+...-...|.+.....+ ++.|+..|+.+.+.+|....
T Consensus 221 l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPYRl~ 297 (559)
T KOG1155|consen 221 LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPYRLD 297 (559)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCCcch
Confidence 443 22334456788888888999999999998888 78888888888888888888 99999999999999999888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHH
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1065)
-+-.+.++++...+-.+..-+...+... +...++.+..+|..|...++.++|+.+|+++++ .+|....+|..+|
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmG 371 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMG 371 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhh
Confidence 8888888888888877766666666555 345668889999999999999999999999998 6788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHH
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLN 429 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~ 429 (1065)
.-|..+.+...|+..|+.+++++|.+..+|+.||+.|.-++...=|+-+|++++...|+++ .+|.
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs---------------Rlw~ 436 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS---------------RLWV 436 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch---------------HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 5788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHH
Q 001509 430 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509 (1065)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la 509 (1065)
.+|.+|.+.++.++|+.+|++++.. ......+++.+|
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~-------------------------------------------~dte~~~l~~La 473 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILL-------------------------------------------GDTEGSALVRLA 473 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-------------------------------------------cccchHHHHHHH
Confidence 8999999999999999999999873 223567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHH-------HCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 001509 510 RLLEQIHDTVAASVLYRLILF-------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 568 (1065)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 568 (1065)
.+|..+++..+|..+|.+.+. ..|....+...|+..+.+.+++++|..+...++.-++.
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 999999999999999999887 45666778888999999999999999888887766443
No 36
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=4.8e-22 Score=243.31 Aligned_cols=467 Identities=13% Similarity=0.038 Sum_probs=389.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001509 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1065)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1065)
...|..+...|.+.|++++|+.+|+.+..... +. -....++.+..++...+... .|..++..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~---~~----~~~~t~~~ll~a~~~~~~~~-----------~a~~l~~~ 148 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCP---FT----LPASTYDALVEACIALKSIR-----------CVKAVYWH 148 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---CC----CCHHHHHHHHHHHHhCCCHH-----------HHHHHHHH
Confidence 34789999999999999999999998854321 00 12346777777787777665 67777777
Q ss_pred Hhh--cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 001509 120 ASR--IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1065)
Q Consensus 120 a~~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1065)
+.. ..| ++.++..+...|.+.|+++.|...|+.+.. | +..+|..+...|.+.|++++|+.+|++++...+....
T Consensus 149 m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 149 VESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence 765 445 578889999999999999999999998853 3 5778999999999999999999999999987755545
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLD-PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1065)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1065)
.++..+..++...|....+...+..+++.. ..+..++..|...|.+.|+ +++|...|..+ .+.+..+|+.+..
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~---~~~A~~vf~~m---~~~~~vt~n~li~ 298 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD---IEDARCVFDGM---PEKTTVAWNSMLA 298 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC---HHHHHHHHHhC---CCCChhHHHHHHH
Confidence 667778888899999999999998887754 2356678889999999999 99999999876 4568899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcC
Q 001509 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1065)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1065)
.|...|++++|..+|..+.... ...+..++..+..++...|.++.|...+..+++.. .+....++..+..+|.+.|
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g--~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSG--VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWG 374 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCC
Confidence 9999999999999999987643 23456789999999999999999999999998752 2445567888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001509 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQARTLLKKAGEEVPIEVLNNIGVI 434 (1065)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~~~~~la~~ 434 (1065)
++++|..+|+++.. .+..+|..+...|.+.|+.++|+.+|+++... .|+. .++..+...
T Consensus 375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~----------------~T~~~ll~a 435 (697)
T PLN03081 375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH----------------VTFLAVLSA 435 (697)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH----------------HHHHHHHHH
Confidence 99999999998764 35778999999999999999999999998764 3443 468888899
Q ss_pred HHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHH
Q 001509 435 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 514 (1065)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 514 (1065)
+...|..++|..+|+.+..... ..| +...|..+..+|.+
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g----------------------------------------~~p-~~~~y~~li~~l~r 474 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHR----------------------------------------IKP-RAMHYACMIELLGR 474 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcC----------------------------------------CCC-CccchHhHHHHHHh
Confidence 9999999999999999875211 222 45678889999999
Q ss_pred cCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHH
Q 001509 515 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 594 (1065)
Q Consensus 515 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 594 (1065)
.|++++|..+++++- ..| +..+|..+...+...|+++.|...+++++.+.|++...|..++.+|...|+|++|.+.++
T Consensus 475 ~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 475 EGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred cCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999987652 233 466799999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcC
Q 001509 595 AASDAT 600 (1065)
Q Consensus 595 ~al~~~ 600 (1065)
.+....
T Consensus 553 ~m~~~g 558 (697)
T PLN03081 553 TLKRKG 558 (697)
T ss_pred HHHHcC
Confidence 987754
No 37
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=9.2e-22 Score=240.84 Aligned_cols=463 Identities=12% Similarity=0.002 Sum_probs=323.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1065)
..|..+...+...|++.+|+..|..+....| -+..++..+..++...+++..|..++..+..........++..+..+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4677788888899999999999998876543 35677888888888999999999999988876533335678888899
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Q 001509 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFTGQHF 285 (1065)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 285 (1065)
|.+.|+++.|...|+.+.. | +...|..+...+...|+ +++|+..|.++....+ .+..++..+...+...|...
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~---~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGN---YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999998743 3 55678888888888888 8888888888876543 24556666667777777777
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
.+..++..+++.. ...+..++..+...|.+.|++++|..+|.... +....+|..+...|.+.|++++|+.+|
T Consensus 242 ~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 242 AGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred HHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777776666543 12344566777777777777777777776553 224456777777777777777777777
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001509 366 EKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 444 (1065)
Q Consensus 366 ~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A 444 (1065)
.++.... ..+..++..+..++.+.|++++|..++..+++...... ..+++.+...|.+.|++++|
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d--------------~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD--------------IVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC--------------eeehHHHHHHHHHCCCHHHH
Confidence 7776532 12355677777777777777777777777766532111 13566677777777777777
Q ss_pred HHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHH
Q 001509 445 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524 (1065)
Q Consensus 445 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 524 (1065)
..+|.++.. .+..+|..+...|...|+.++|+.+
T Consensus 380 ~~vf~~m~~----------------------------------------------~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 380 RNVFDRMPR----------------------------------------------KNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred HHHHHhCCC----------------------------------------------CCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 777776532 1345667777777777777777777
Q ss_pred HHHHHHH--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ChHHHHHhhhhhccccchHHHHHHHHHhhhcC
Q 001509 525 YRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGDLELKNDDWVKAKETFRAASDAT 600 (1065)
Q Consensus 525 ~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 600 (1065)
|+++... .|+ ..++..+...+...|..++|..+|+.+.+..+- +...|..+..++.+.|++++|.+.++++ .
T Consensus 414 f~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~ 489 (697)
T PLN03081 414 FERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P 489 (697)
T ss_pred HHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C
Confidence 7777653 233 555666666777777777777777777654322 3346666777777777777777776653 2
Q ss_pred CCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHH
Q 001509 601 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 680 (1065)
Q Consensus 601 ~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~ 680 (1065)
..++...|..|... +... |+++.|...+++++...|.+...+..++.+|...|++++|..+++.+.+
T Consensus 490 ~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 490 FKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22355566666666 6555 7777777777777777777766777777777777777777777777665
Q ss_pred Hh
Q 001509 681 AA 682 (1065)
Q Consensus 681 ~~ 682 (1065)
..
T Consensus 557 ~g 558 (697)
T PLN03081 557 KG 558 (697)
T ss_pred cC
Confidence 53
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3e-23 Score=226.54 Aligned_cols=312 Identities=21% Similarity=0.250 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 81 ~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
....++..+|..|..+.... ..+|+..|.+.-...++...++..+|..|+..++|++|..+|+.+-+..|-
T Consensus 315 ~l~~llr~~~~~~~~~s~y~---------~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYN---------CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55677777888887766544 559999999977777888888889999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
.+...-....+++...+--+---+.+..+..+|+. +..|..+|.||.-+++++.|+.+|+++++++|....++..+|.=
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 77777677777777777666666777888889999 77899999999999999999999999999999999999999998
Q ss_pred HHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCC
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1065)
+....+ ++.|+.+|+.++..+|.+..+|+.+|.+|..+++++.|+-.|++++.. +|........+|.++++.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---NP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---NPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC---CccchhHHhhhhHHHHHhhh
Confidence 888888 999999999999999999999999999999999999999999999987 57788999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1065)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1065)
.++|+.+|++|+. .+|..+...+..|.+++..+++++|+..++++.++-|+...+++.+|.+|.+.|+.+.|+..|-
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 9999999999997 6688888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHH
Q 001509 401 KAAKIDPRDAQ 411 (1065)
Q Consensus 401 ~al~~~p~~~~ 411 (1065)
-++.++|....
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 99999998654
No 39
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.92 E-value=1.8e-20 Score=210.96 Aligned_cols=590 Identities=14% Similarity=0.054 Sum_probs=420.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YSDSLEF 184 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~~Al~~ 184 (1065)
.+.+..|..+|..++..+|.+ ....|.+......|..|...+..+.... .|.+.+..+..++.+.+. .+-|.-.
T Consensus 381 P~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~ 456 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLL 456 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHH
Confidence 455667777777777776655 5566777777777777777777776665 455555566666554211 1111111
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhC
Q 001509 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1065)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 264 (1065)
+.. ...|..++. +...+...|...|-++++++|....++..||.+|....+ ...|..+|.++++++
T Consensus 457 ~~e---------~~~~w~a~~--~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLD 522 (1238)
T KOG1127|consen 457 ECE---------NSEFWVALG--CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELD 522 (1238)
T ss_pred HHH---------HHHHHHHHH--HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCC
Confidence 111 111111221 233458899999999999999999999999999998877 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001509 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1065)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1065)
+.+..+.-..+..|....+++.|....-.+-+..+. ......|..+|..|...+++.+|+..|+.++. .+|....+
T Consensus 523 atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~ 598 (1238)
T KOG1127|consen 523 ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNL 598 (1238)
T ss_pred chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHH
Confidence 999999999999999999999999885544333211 12345667799999999999999999999998 67888899
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCC
Q 001509 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 424 (1065)
|..+|.+|...|.+..|++.|.++..+.|.+..+.+..+.+....|.|.+|+..+...+........+ ....
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~--------q~gL 670 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG--------QNGL 670 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--------hhhH
Confidence 99999999999999999999999999999999999999999999999999999999988765433322 1122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHH
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 504 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 504 (1065)
.+++...+..+...|-+..|..+++++++.....-.-.. ..+...|.+-....-.|.+++ |+.+..
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~-----~~~~~~Wi~asdac~~f~q~e---------~~~vn~ 736 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL-----QSDRLQWIVASDACYIFSQEE---------PSIVNM 736 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHhHHHHHHHHhc---------ccchHH
Confidence 367777788888888889999999988875321100000 000011111111111111111 111111
Q ss_pred HHH--HHHHHHHcCCh---H---HHHHHHHHHHHHCCChHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHCCC
Q 001509 505 LFN--LARLLEQIHDT---V---AASVLYRLILFKYQDYVDAYLRLAAIAKA--------RNNLQLSIELVNEALKVNGK 568 (1065)
Q Consensus 505 ~~~--la~~~~~~g~~---~---~A~~~~~~al~~~p~~~~a~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~ 568 (1065)
++. +-.-...++.. + -|.+++-..+..-.. +..|+++|.-|+. ..+...|+.++.+++++..+
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an 815 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN 815 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc
Confidence 111 11111112211 1 223333333332221 5567777766654 22445799999999999999
Q ss_pred ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhC
Q 001509 569 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 648 (1065)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 648 (1065)
+...|..||.+ ...|++.-|...|-+.+...|. ..-.|.++|.+ +... .+++.|...|.++..++
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL-~l~n------------~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVL-VLEN------------QDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheecccee-EEec------------ccHHHhhHHHHhhhhcC
Confidence 99999999999 6668999999999999887776 66678888888 8887 99999999999999999
Q ss_pred CcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHh-
Q 001509 649 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC------LRKF- 721 (1065)
Q Consensus 649 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~- 721 (1065)
|.|...|.+.+.+....|+.-++..+|....+......-......|++--.....+|+++.-|..-+++ ++.|
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999985555543322233456666667777888888777665543 3332
Q ss_pred -cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 001509 722 -YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 756 (1065)
Q Consensus 722 -~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 756 (1065)
..++..-++...|..+.+.+.+.+|.....+++.+
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rligl 996 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGL 996 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 23455888999999999999999999888877654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-20 Score=196.00 Aligned_cols=444 Identities=16% Similarity=0.108 Sum_probs=343.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------------h---HHHHHHHHHHHHh
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------------Y---SDSLEFYKRALQV 191 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------------~---~~Al~~~~~al~~ 191 (1065)
.+.+|..++....++.|.-+++.+.. ....+..-.+.+..|. + ...+..+.+-++.
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~ 155 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLES 155 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHH
Confidence 45677888888888888777766533 1122211112222111 1 1222222332222
Q ss_pred ---CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC--C
Q 001509 192 ---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--Y 266 (1065)
Q Consensus 192 ---~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~ 266 (1065)
.-+.....++..|.++...|....|+..|..++...|-+..+|..|+.+..... ........-| .
T Consensus 156 ~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----------~~~~l~~~l~~~~ 225 (559)
T KOG1155|consen 156 KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----------ILSILVVGLPSDM 225 (559)
T ss_pred HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----------HHHHHHhcCcccc
Confidence 122235678889999999999999999999999999999999999987754332 2222222233 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 001509 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1065)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1065)
+...-..+..++....++++++.-++...... .|.....-...|.+.+...++++|+..|+.+.+ ++|-...-.-
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g--f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dmd 300 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVG--FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDMD 300 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhHH
Confidence 55666777888888888888888877776653 356667778889999999999999999999998 4454444444
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHH
Q 001509 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIE 426 (1065)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 426 (1065)
....+++-.++-.+-.-+...+..++.-.+++...+|..|...++.++|+.+|+++++++|....
T Consensus 301 lySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~--------------- 365 (559)
T KOG1155|consen 301 LYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS--------------- 365 (559)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH---------------
Confidence 55666666666555555666677788778899999999999999999999999999999999884
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHH
Q 001509 427 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 506 (1065)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 506 (1065)
+|..+|.-|..+.+...|+..|++|++ ..|.+-.+|+
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvd-------------------------------------------i~p~DyRAWY 402 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVD-------------------------------------------INPRDYRAWY 402 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHh-------------------------------------------cCchhHHHHh
Confidence 577779999999999999999999998 5677999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccch
Q 001509 507 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 586 (1065)
Q Consensus 507 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 586 (1065)
.+|..|..++.+.-|+-+|++++...|++...|..||.||.+.++.++|+++|..++..+..+..++..+|.+|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC------CCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 587 VKAKETFRAASDAT------DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 587 ~~A~~~~~~al~~~------~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
.+|..+|++.+... .+....+...|+.. +... +++++|..+...++.-++.
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~-f~k~------------~~~~~As~Ya~~~~~~~~e---------- 539 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY-FKKM------------KDFDEASYYATLVLKGETE---------- 539 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HHhh------------cchHHHHHHHHHHhcCCch----------
Confidence 99999999988732 22245677778888 8888 9999998888777665332
Q ss_pred HHHhcCCcHHHHHHHHHHHHHh
Q 001509 661 VLAEKGQFDVSKDLFTQVQEAA 682 (1065)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~ 682 (1065)
.++|..+++.++...
T Consensus 540 -------~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 540 -------CEEAKALLREIRKIQ 554 (559)
T ss_pred -------HHHHHHHHHHHHHhc
Confidence 456666666666543
No 41
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-21 Score=207.14 Aligned_cols=260 Identities=18% Similarity=0.197 Sum_probs=199.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCC
Q 001509 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEV 423 (1065)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 423 (1065)
..-.+|...++..++..|+..|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++.......-..++
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI------- 297 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI------- 297 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH-------
Confidence 35678999999999999999999999999 8888999999999999999999999888777654433222222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 424 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
...+..+|..|...++++.|+.+|.+++.... .
T Consensus 298 -ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R--------------------------------------------t-- 330 (539)
T KOG0548|consen 298 -AKALARLGNAYTKREDYEGAIKYYQKALTEHR--------------------------------------------T-- 330 (539)
T ss_pred -HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc--------------------------------------------C--
Confidence 13444577788889999999999999886211 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccc
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 583 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 583 (1065)
..++......++++.......-.+|.-......-|..++..|+|..|+..|.+++..+|+++..|.+.+.||.++
T Consensus 331 -----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 331 -----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 334445556677777777666677777666666788888888888888888888888888888888888888888
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHH
Q 001509 584 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 663 (1065)
Q Consensus 584 g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 663 (1065)
|.+..|+...+.++++.|+ ..-.++.-|.+ +... .+|++|++.|+++++.+|++..+.-++..++.
T Consensus 406 ~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 8888888888888887665 56677777777 7777 88889999999999999888888888877776
Q ss_pred hcCCcHHHHHHHHH
Q 001509 664 EKGQFDVSKDLFTQ 677 (1065)
Q Consensus 664 ~~g~~~~A~~~~~~ 677 (1065)
.+........+.++
T Consensus 472 a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 472 AQRGDETPEETKRR 485 (539)
T ss_pred HhhcCCCHHHHHHh
Confidence 54333333444444
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.2e-22 Score=221.86 Aligned_cols=300 Identities=19% Similarity=0.194 Sum_probs=247.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHH
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLN 429 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~ 429 (1065)
.....+-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-++.|-...... +|
T Consensus 327 ~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~me------------iy- 393 (638)
T KOG1126|consen 327 YRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGME------------IY- 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh------------HH-
Confidence 33344456788999999977777888888899999999999999999999998888886554222 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHH
Q 001509 430 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509 (1065)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la 509 (1065)
..+++...+- -++.++-+-+- ..+|..+..|..+|
T Consensus 394 --ST~LWHLq~~-v~Ls~Laq~Li------------------------------------------~~~~~sPesWca~G 428 (638)
T KOG1126|consen 394 --STTLWHLQDE-VALSYLAQDLI------------------------------------------DTDPNSPESWCALG 428 (638)
T ss_pred --HHHHHHHHhh-HHHHHHHHHHH------------------------------------------hhCCCCcHHHHHhc
Confidence 2222222221 12222222111 16778899999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHH
Q 001509 510 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 589 (1065)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 589 (1065)
.||..+++++.|++.|+++++++|....+|..+|.-+.....++.|..+|+.++.++|.+..+|+.+|.+|.++++++.|
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcH
Q 001509 590 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 669 (1065)
Q Consensus 590 ~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 669 (1065)
.-+|++++.+.|. .......+|.+ +... |..++|+.+|++++.++|.|+...+..|.++...+++.
T Consensus 509 e~~fqkA~~INP~-nsvi~~~~g~~-~~~~------------k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 509 EFHFQKAVEINPS-NSVILCHIGRI-QHQL------------KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred HHHHHhhhcCCcc-chhHHhhhhHH-HHHh------------hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 9999999998887 55566678888 8888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 670 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 670 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
+|+..++.+.+..| +...+++.+|.+|..+|+.+.|+..|.-|+...|...+
T Consensus 575 eal~~LEeLk~~vP-----~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 575 EALQELEELKELVP-----QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999887 77889999999999999999999999999888655544
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.2e-18 Score=181.30 Aligned_cols=480 Identities=18% Similarity=0.199 Sum_probs=376.1
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
..|+..++.+.-+...|+..|.--..++++..|...|+++|..+..+...|+..+.+-++.+....|..++.+++.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34555566666677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001509 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1065)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 274 (1065)
. ...|+....+-..+|+...|.+.|++-+...| ...+|.....+-+..++ ++.|...|++.+-.+| ....|...
T Consensus 140 V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP-~v~~wiky 213 (677)
T KOG1915|consen 140 V-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKE---IERARSIYERFVLVHP-KVSNWIKY 213 (677)
T ss_pred H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhH---HHHHHHHHHHHheecc-cHHHHHHH
Confidence 8 77788888888999999999999999999999 57889999988888888 9999999999998887 45678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHH
Q 001509 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1065)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1065)
+..-...|+...+..+|+.++....+.......+...|..-..+..++.|...|.-+++.++.+.. ...+-.+...--+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHH
Confidence 999999999999999999999877655555556666777777889999999999999987653211 1222222222233
Q ss_pred cCCH---HHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHH
Q 001509 355 LGDF---RSAL-----TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIE 426 (1065)
Q Consensus 355 ~g~~---~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 426 (1065)
-|+. +.++ -.|+..+..+|.+.++|+.+-.+....|+.+.-.+.|++++...|....-...-. - .-
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~R-Y-----IY 366 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRR-Y-----IY 366 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHH-H-----HH
Confidence 3443 3333 2578888999999999999999999999999999999999998776443111000 0 13
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHH
Q 001509 427 VLNNIGVI-HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 505 (1065)
Q Consensus 427 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1065)
+|.|.+.. -+...+.+.+.++|+.++.+-|. ..-..+.+|
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~lIPH---------------------------------------kkFtFaKiW 407 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDLIPH---------------------------------------KKFTFAKIW 407 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc---------------------------------------ccchHHHHH
Confidence 45555443 34578899999999999985432 112366788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccc
Q 001509 506 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 585 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 585 (1065)
...|....++.+...|..++-.++-..|.+ ..+-....+-.+.++++.+..+|++.+..+|.+..+|...|.+-..+|+
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999984 4455556677889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 586 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 586 ~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
++.|..+|.-+++.... +..-++.-+ |... +.+.|.+++|..+|++.|...+... .|...|.
T Consensus 487 tdRaRaifelAi~qp~l-dmpellwka---YIdF--------Ei~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 487 TDRARAIFELAISQPAL-DMPELLWKA---YIDF--------EIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHHHHHHhcCccc-ccHHHHHHH---hhhh--------hhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 99999999999875432 333332222 2221 1122777777777777777766544 4444443
No 44
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.91 E-value=3.9e-19 Score=192.91 Aligned_cols=447 Identities=16% Similarity=0.172 Sum_probs=326.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
..+++..+.-++..++|...+...+.+++..|.+...+...|..+...|+-++|..+...++..++.+ ...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHH
Confidence 34677778888889999999999999999999999999999999999999999999999999999988 77899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001509 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1065)
....+|++|+.+|..|+.++|+|...|.-++.+..+.++ ++-....-.+.++..|.....|..++..++..|++..|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 88888888899999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHH
Q 001509 288 EQLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1065)
Q Consensus 288 ~~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1065)
..+.+...+.....+. ...+......+....|.+++|++.+..--..+ -+........+.++.+.+++++|+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i---~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI---VDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH---HHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999888876542232 23455566777888899999988876654321 222334556789999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 001509 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 441 (1065)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~ 441 (1065)
..|..++..+|++...+..+-.++....+.-+++ ..|...-...|...... .++.....-.++
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~----------------Rlplsvl~~eel 303 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR----------------RLPLSVLNGEEL 303 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch----------------hccHHHhCcchh
Confidence 9999999999999998888888876333344444 56666555555443211 111111111111
Q ss_pred HHHHH-HHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCC-------CcCCCCchhHHHHHHHHHHH
Q 001509 442 ESAHQ-SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN-------HVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 442 ~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~la~~~~ 513 (1065)
...+. ++...+..+.-. +.......+........+..-..++...+...+. ..+.+....+.++.++.-+-
T Consensus 304 ~~~vdkyL~~~l~Kg~p~-vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPS-VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHHHhhcCCCc-hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 11111 111222111000 0000000000000000111111122222221111 11233345667788899999
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHH
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 593 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 593 (1065)
..|+++.|..++..++...|..++.|...|.++...|++++|..++..+.+++-.+..+-..-+...++.++.++|.+..
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998777777667888888889999998887
Q ss_pred HHhhh
Q 001509 594 RAASD 598 (1065)
Q Consensus 594 ~~al~ 598 (1065)
.+...
T Consensus 463 skFTr 467 (700)
T KOG1156|consen 463 SKFTR 467 (700)
T ss_pred HHhhh
Confidence 76544
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=1.1e-20 Score=188.57 Aligned_cols=345 Identities=18% Similarity=0.171 Sum_probs=260.6
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 001509 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1065)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1065)
.+|.+..-++.+|..++..|++..|+..|-.++..+|++..+++..|.+|+..|+-..|+..+.+++++.|+. ..+++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHH
Confidence 3456677889999999999999999999999999999999999999999999999999999999999999999 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEAL---VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1065)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1065)
.|.+++++|.++.|...|..++..+|++.... -.++.+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------ 155 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------ 155 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH------------------------------------
Confidence 99999999999999999999999999654322 111111100
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHH
Q 001509 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1065)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1065)
..+......++..|++..|+.+...++. ..|..+..+...+.||+..|.+.
T Consensus 156 --------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 156 --------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred --------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHH
Confidence 1112223344556677777777777766 44666666777788888888888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 001509 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG 439 (1065)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g 439 (1065)
.||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|+........++.... .-...-+.-....+
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv---~K~les~e~~ie~~ 283 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV---VKSLESAEQAIEEK 283 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH---HHHHHHHHHHHhhh
Confidence 888888888777777888888888888888888888888888888888765432222211100 00111133445667
Q ss_pred CHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChH
Q 001509 440 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 519 (1065)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 519 (1065)
+|.+++...++.+...|. ..+....+...+..|+..-+++.
T Consensus 284 ~~t~cle~ge~vlk~ep~---------------------------------------~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPE---------------------------------------ETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred hHHHHHHHHHHHHhcCCc---------------------------------------ccceeeeeeheeeecccccCCHH
Confidence 777777777777663221 11223334445677888889999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Q 001509 520 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 575 (1065)
Q Consensus 520 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 575 (1065)
+|+..+..++..+|+++.++...+..|+....|+.|+..|+++.+.++++..+..-
T Consensus 325 eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 325 EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999988766543
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=8.6e-21 Score=217.44 Aligned_cols=303 Identities=18% Similarity=0.164 Sum_probs=212.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCC
Q 001509 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEV 423 (1065)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 423 (1065)
..+..|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+.++++++...+.....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------- 105 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------- 105 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------
Confidence 355567778888888888888888888888888888888888888888888888888877643322210
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 424 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
...++..+|.+|...|+++.|+.+|.+++. ..|....
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~-------------------------------------------~~~~~~~ 142 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVD-------------------------------------------EGDFAEG 142 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-------------------------------------------CCcchHH
Confidence 013577788888888888888888888776 3344666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhh
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 578 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 578 (1065)
++..++.++...|++++|+..+..++...|... ..+..+|.++...|++++|+.+|++++..+|+...++..+|.
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 777888888888888888888888887766542 245667777788888888888888888888877777777777
Q ss_pred hhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHH
Q 001509 579 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 658 (1065)
Q Consensus 579 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 658 (1065)
++...|++++|+..|.+++...|.....++..++.+ |... |++++|+..+++++..+|+...+ ..+
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~~A~~~l~~~~~~~p~~~~~-~~l 288 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEAEGLEFLRRALEEYPGADLL-LAL 288 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCchHH-HHH
Confidence 777777777777777777766554334445566666 6666 77777777777777777665433 666
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 001509 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA--QGNFALAMKMYQNCLR 719 (1065)
Q Consensus 659 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~ 719 (1065)
+.++...|++++|+.+|.+++...| +++.+...++..+.. .|+..+|+..+++.++
T Consensus 289 a~~~~~~g~~~~A~~~l~~~l~~~P-----~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 289 AQLLEEQEGPEAAQALLREQLRRHP-----SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCc-----CHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 7777777777777777777776665 333332222222211 3466666666666665
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.8e-20 Score=213.19 Aligned_cols=300 Identities=21% Similarity=0.168 Sum_probs=259.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc---hHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---GAIRLGIG 204 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~~la 204 (1065)
....+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...+... ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 346677899999999999999999999999999999999999999999999999999999988543321 24678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 001509 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-----MALNYLANHFF 279 (1065)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 279 (1065)
.++...|+++.|...|.+++..+|.+..++..++.++...|+ +++|+..+.+++...|.+. ..+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999888753 24567899999
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-hhhhhhHHHHHHHcCCH
Q 001509 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDF 358 (1065)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~ 358 (1065)
..|++++|+..+.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|++
T Consensus 192 ~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999864 556789999999999999999999999999974 2333 45677899999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 001509 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF-- 436 (1065)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~-- 436 (1065)
++|+..+++++...|+... +..++.++...|++++|+.+|++++...|++.. +..+...+.
T Consensus 266 ~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~----------------~~~l~~~~~~~ 328 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRG----------------FHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH----------------HHHHHHHhhhc
Confidence 9999999999999998654 488999999999999999999999999998764 222222322
Q ss_pred -HcCCHHHHHHHHHHHHc
Q 001509 437 -EKGEFESAHQSFKDALG 453 (1065)
Q Consensus 437 -~~g~~~~A~~~~~~al~ 453 (1065)
..|+..+++..+++++.
T Consensus 329 ~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCCccchhHHHHHHHHHH
Confidence 25689999999998876
No 48
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.8e-20 Score=197.39 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
....|+..+..|+|+.|+.+|..++.++|.|...+.+...+|...|+|.+|+..-.+..+++|+. +..|..+|..+.-+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999999999999999 67799999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1065)
|+|++|+..|.+.|+.+|+|...+..|+.++
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999988888887
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=2.8e-18 Score=190.12 Aligned_cols=420 Identities=19% Similarity=0.144 Sum_probs=342.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 001509 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1065)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1065)
+++.++-.|.......|++..+.+.|++++... -...+.|+.++.++...|.-..|+.+.+......+.+++....+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~---~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS---FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 678889999999999999999999999988653 34568999999999999999999999999887543333444445
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCc
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYP-----DNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRD 409 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~ 409 (1065)
+.-..|+...+.+++++.+..+++.... -.+..+..+|.+|..+ ....++++.++++++.+|+|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5555666778999999999999998421 1256788888888755 23568999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcc
Q 001509 410 AQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 489 (1065)
Q Consensus 410 ~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (1065)
+ .+.+.++.-|..+++...|..+.++++..
T Consensus 478 p---------------~~if~lalq~A~~R~l~sAl~~~~eaL~l----------------------------------- 507 (799)
T KOG4162|consen 478 P---------------LVIFYLALQYAEQRQLTSALDYAREALAL----------------------------------- 507 (799)
T ss_pred c---------------hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----------------------------------
Confidence 8 46888999999999999999999999984
Q ss_pred cCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 001509 490 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 569 (1065)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 569 (1065)
.....+..|..++.++...+++..|+.+...++...|++.........+-...++.++|+..+...+.+-...
T Consensus 508 -------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 508 -------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred -------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh
Confidence 2345788999999999999999999999999999999988877777788888999999999998888765433
Q ss_pred hHHH---------HHhhhhhccccchHHHHHHHHHhhhcC-------------------CCCCh------HHHHhhHHHH
Q 001509 570 PNAL---------SMLGDLELKNDDWVKAKETFRAASDAT-------------------DGKDS------YATLSLGNWN 615 (1065)
Q Consensus 570 ~~~~---------~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------~~~d~------~~~~~lg~~~ 615 (1065)
+.+. ...+.+.....+..+|...+..+.... +.++. ..|...+..
T Consensus 581 ~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~- 659 (799)
T KOG4162|consen 581 YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADL- 659 (799)
T ss_pred hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHH-
Confidence 3222 223333444455556665555544310 11111 123344444
Q ss_pred HHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHH
Q 001509 616 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 695 (1065)
Q Consensus 616 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 695 (1065)
|... ++.+.|..++.++-.++|..++.++..|.++...|++.+|...|..++..+| +++.+..
T Consensus 660 ~~~~------------~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-----~hv~s~~ 722 (799)
T KOG4162|consen 660 FLLS------------GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-----DHVPSMT 722 (799)
T ss_pred HHhc------------CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-----CCcHHHH
Confidence 5555 8889999999999999999999999999999999999999999999999998 6788999
Q ss_pred HHHHHHHHcCCHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHH
Q 001509 696 NLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 765 (1065)
Q Consensus 696 ~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 765 (1065)
.+|.++...|+..-|.. ++..+++. ++.++++|+++|.++.+.|+.+.|..+|.-++++.+.+|+..|
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence 99999999999988888 99999998 6778999999999999999999999999999999999998765
No 50
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.88 E-value=8e-18 Score=182.83 Aligned_cols=539 Identities=14% Similarity=0.087 Sum_probs=354.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001509 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1065)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1065)
..+++..+.-.+..++|...+...+.+++..|+. +......|..+..+|+.++|......++..++.+...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH-geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEH-GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc-chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 3466777777889999999999999999999999 777899999999999999999999999999999999999999999
Q ss_pred HHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCH
Q 001509 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1065)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1065)
....+ |++|+.+|+.|+.+.|+|..++..++.+..+.+++......-...++. .|.....|...+.+++-.|++
T Consensus 86 R~dK~---Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 86 RSDKK---YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL---RPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred hhhhh---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHH
Confidence 99988 999999999999999999999999999999999999988887777766 366678899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC-----chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001509 322 EKAGLYYMASVKEINKPHE-----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396 (1065)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 396 (1065)
..|....+...+.....+. ...+.....+++...|.++.|++.+...-..--+........+.++..++++++|.
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999999888875432222 22345566778888899999888877655444445667777899999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHcccchhhhcccccchhhhhhhhh
Q 001509 397 ELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH-QSFKDALGDGIWLTLLDSKTKTYVIDASAS 475 (1065)
Q Consensus 397 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 475 (1065)
..|...+..+|++..- +..+-.++....+--+++ ..|...-+..+
T Consensus 240 ~~y~~Ll~rnPdn~~Y---------------y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~------------------- 285 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDY---------------YEGLEKALGKIKDMLEALKALYAILSEKYP------------------- 285 (700)
T ss_pred HHHHHHHhhCchhHHH---------------HHHHHHHHHHHhhhHHHHHHHHHHHhhcCc-------------------
Confidence 9999999999998752 222333332222222333 33333332211
Q ss_pred HHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHH-HHHHHHHHCCChHHHHHHHHHHHHHcCCHHH
Q 001509 476 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV-LYRLILFKYQDYVDAYLRLAAIAKARNNLQL 554 (1065)
Q Consensus 476 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 554 (1065)
.......++.....-.++..... ++...++.. -+.....+-.+|.. +..
T Consensus 286 -------------------------r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p~vf~dl~SLyk~---p~k 335 (700)
T KOG1156|consen 286 -------------------------RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VPSVFKDLRSLYKD---PEK 335 (700)
T ss_pred -------------------------ccccchhccHHHhCcchhHHHHHHHHHHHhhcC--CCchhhhhHHHHhc---hhH
Confidence 01111111111111111222111 112222110 01111111111111 000
Q ss_pred HHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhH
Q 001509 555 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 634 (1065)
Q Consensus 555 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 634 (1065)
.- ++++.+ .-|...-............-...|..-.+.+..++.- |... |++
T Consensus 336 ~~-~le~Lv--------------t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh-~D~~------------g~~ 387 (700)
T KOG1156|consen 336 VA-FLEKLV--------------TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH-YDKL------------GDY 387 (700)
T ss_pred hH-HHHHHH--------------HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH-HHHc------------ccH
Confidence 00 122111 1111000000000000000001111122233333333 4444 999
Q ss_pred HHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHH--HHHHHHHcCCHHHHHH
Q 001509 635 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN--LAHVYFAQGNFALAMK 712 (1065)
Q Consensus 635 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~--lg~~~~~~g~~~~A~~ 712 (1065)
+.|..++..++..-|.-+..+..-|.++...|.+++|..++..+.+.+ .++.++| -|......++.++|..
T Consensus 388 ~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-------~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 388 EVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-------TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999999999999999999999999999999999999876 4556555 6777888999999998
Q ss_pred HHHHHHHHhcCC--Cc------HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHH-HHhhHHHHHH-----
Q 001509 713 MYQNCLRKFYYN--TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG-VAMQKFSAST----- 778 (1065)
Q Consensus 713 ~~~~al~~~~~~--~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla-~~~~~~~~~~----- 778 (1065)
+..+.-+. +.+ .+ .+....-|.+|+++|++..|++-|..+-..+..-..-+|..- .|+.++.-..
T Consensus 461 ~~skFTr~-~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll 539 (700)
T KOG1156|consen 461 VLSKFTRE-GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELL 539 (700)
T ss_pred HHHHhhhc-ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHH
Confidence 87664332 111 11 333445589999999999999888777666543333333322 3333332221
Q ss_pred -HhhhcCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001509 779 -LQKTRRTADEVRSTVAELENAVRVFSHLSAAS 810 (1065)
Q Consensus 779 -l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~ 810 (1065)
+....++.+.. +.....|++||=.|...+
T Consensus 540 ~~~d~L~~~p~y---~~Aa~~Ai~iYl~l~d~p 569 (700)
T KOG1156|consen 540 EWEDNLRSSPYY---LRAAKGAIEIYLRLHDSP 569 (700)
T ss_pred HHHHhhccChHH---HHHHHHHHHHHHHHhcCc
Confidence 23333444444 345678999998888765
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=9.3e-20 Score=182.10 Aligned_cols=321 Identities=16% Similarity=0.119 Sum_probs=277.1
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1065)
Q Consensus 80 ~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 159 (1065)
+..+.-..-||.-++..|.+. .|+..|..++..+|++-.+++.+|.+|+..|+-.-|+.-|.+++.+.|
T Consensus 35 ~advekhlElGk~lla~~Q~s-----------DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp 103 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLS-----------DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP 103 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc
Confidence 344555666777777666554 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--h------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--G------------AIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1065)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1065)
+...+....|.+++++|.++.|...|..++..+|++. . ..+......++..|+...|+.....+++
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999661 1 1223345566778999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCch
Q 001509 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 305 (1065)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 305 (1065)
+.|-+...+...+.+|...|+ +..|+..++.+-++..++...++.++.+++..|+...++......++..+......
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e---~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGE---PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999876554333
Q ss_pred HHHHHH---------HHHHHHcCCHHHHHHHHHHHHHhcCC-CCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 306 HSYYNL---------ARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 306 ~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
..|-.+ +......++|.+++...++.++.-+. .+-....+-.+..|+..-|++.+|+..+.+++.++|++
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d 340 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH
Confidence 333322 44456688999999999999874332 22233445567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART 414 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 414 (1065)
..++...+..|+-...|+.|+.-|+++.+.++++..++.
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999999999999999999999999886544
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-18 Score=190.56 Aligned_cols=430 Identities=17% Similarity=0.141 Sum_probs=346.8
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCchHHHHHH
Q 001509 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (1065)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~l 203 (1065)
+++..|-.+...+...|++..+.+.|++++...-.....|+.++.++...|.-..|+.+++..+... |+++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5777888888999999999999999999998877788999999999999999999999999999998 77767777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccc--------hHhHHHHHHHHHHHHHhCCCCHHH
Q 001509 204 GLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (1065)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~ 270 (1065)
..|+...+.+++++.+..+++..... .+.++..+|.+|...-. .....++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 88888999999999999999984321 34567777777654321 223578999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHH
Q 001509 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1065)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1065)
.+.++.-|...++...|......++...+ ...+.+|+.++.++...+++..|+.+...++..++ .+.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~---~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG---DNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh---hhhhhchhhhh
Confidence 99999999999999999999999998853 45679999999999999999999999999998654 33334455556
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHH
Q 001509 351 VQLKLGDFRSALTNFEKVLEIYPDNCETL---------KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR---TLLKK 418 (1065)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~~l~~ 418 (1065)
+-...++.++|+..+...+........+- ...+.+....++..+|+..+.++...-....... ..+++
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 66678999999999988887644322222 2223333333455666666665554321000000 00000
Q ss_pred c----CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhccc
Q 001509 419 A----GEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 490 (1065)
Q Consensus 419 ~----~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (1065)
. +... ...+|...+..+...++.++|..++.++..
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------------------------- 678 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK------------------------------------- 678 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------
Confidence 0 0000 036788889999999999999999999887
Q ss_pred CCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHCCC
Q 001509 491 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE--LVNEALKVNGK 568 (1065)
Q Consensus 491 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~--~~~~al~~~p~ 568 (1065)
..|..+.+|+..|.++...|+..+|...|..++..+|+++.+...+|.++...|+...|.. ++..+++++|.
T Consensus 679 ------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 679 ------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred ------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 4566889999999999999999999999999999999999999999999999999988888 99999999999
Q ss_pred ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCC
Q 001509 569 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 603 (1065)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 603 (1065)
++++|+.+|.++.+.|+.+.|..+|..+++..++.
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999976653
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.9e-18 Score=177.00 Aligned_cols=193 Identities=14% Similarity=0.006 Sum_probs=110.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHH
Q 001509 509 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 588 (1065)
Q Consensus 509 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 588 (1065)
+.+++...++..|+.+-.+++..+|.+..+++..|.++...+++.+|+-.|+.+..+.|...+.|..|..+|+..|.+.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhhhcCCCCChHHHHhhH-HHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCC
Q 001509 589 AKETFRAASDATDGKDSYATLSLG-NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 667 (1065)
Q Consensus 589 A~~~~~~al~~~~~~d~~~~~~lg-~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 667 (1065)
|.-....++...+. ...++..+| .+++... ..-++|..++++.|.++|....+.+.++.++...|.
T Consensus 387 A~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp------------~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 387 ANALANWTIRLFQN-SARSLTLFGTLVLFPDP------------RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHHHHHHHHHHhhc-chhhhhhhcceeeccCc------------hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence 44444444433322 222332232 2212222 456789999999999999988888888888888888
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 668 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 668 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
++.++.++++.+...| +...+..||.++...+.+.+|+..|..|++.
T Consensus 454 ~~D~i~LLe~~L~~~~------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 454 TKDIIKLLEKHLIIFP------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cchHHHHHHHHHhhcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8888888888877764 3456666677766666666666666666665
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.8e-16 Score=162.92 Aligned_cols=492 Identities=16% Similarity=0.191 Sum_probs=348.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1065)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1065)
...|+..++.+.-+...|...|..-..++++..|..+|+++|..+..+ ..+|+..+.+-++......|...|.+++.+-
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-ITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 345667777777788889999999999999999999999999998777 6678899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHH
Q 001509 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1065)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1065)
|.-...|+....+-...|+ +.-|.+.|.+-+...|+. .+|......-
T Consensus 138 PRVdqlWyKY~ymEE~LgN---i~gaRqiferW~~w~P~e-qaW~sfI~fE----------------------------- 184 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGN---IAGARQIFERWMEWEPDE-QAWLSFIKFE----------------------------- 184 (677)
T ss_pred chHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHcCCCcH-HHHHHHHHHH-----------------------------
Confidence 9888888888888888888 888888888888887743 3444444444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001509 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGH 384 (1065)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 384 (1065)
.+.+..+.|...|++.+- ....+..+...+..-.+.|+..-|...|+.++....++ ...+...+.
T Consensus 185 --------lRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~ 252 (677)
T KOG1915|consen 185 --------LRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAE 252 (677)
T ss_pred --------HHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455555555555442 12233445555555555566666666666555543332 223444455
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHcccchhhhc
Q 001509 385 IYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE---SAHQSFKDALGDGIWLTLL 461 (1065)
Q Consensus 385 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~ 461 (1065)
.-..+..++.|..+|+-++..-|.+..- +++..+...--+-|+.. .++..=++
T Consensus 253 fEe~qkE~ERar~iykyAld~~pk~rae-------------eL~k~~~~fEKqfGd~~gIEd~Iv~KRk----------- 308 (677)
T KOG1915|consen 253 FEERQKEYERARFIYKYALDHIPKGRAE-------------ELYKKYTAFEKQFGDKEGIEDAIVGKRK----------- 308 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHH-------------HHHHHHHHHHHHhcchhhhHHHHhhhhh-----------
Confidence 5556667777888888777777765320 22323233333334322 11111000
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHH----
Q 001509 462 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD---- 537 (1065)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 537 (1065)
.++ ...+..+|.+..+|+.+.++....|+.+.-.+.|++++..-|....
T Consensus 309 --------------------~qY-------E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W 361 (677)
T KOG1915|consen 309 --------------------FQY-------EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW 361 (677)
T ss_pred --------------------hHH-------HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH
Confidence 000 0111267788999999999999999999999999999998875422
Q ss_pred -----HHHHHHHH-HHHcCCHHHHHHHHHHHHHHCCCC----hHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHH
Q 001509 538 -----AYLRLAAI-AKARNNLQLSIELVNEALKVNGKY----PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 607 (1065)
Q Consensus 538 -----a~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~ 607 (1065)
.|++.+.. -+...+.+.+..+|+.++.+-|.. ..+|.+.+....++.+...|...+-.++..+|....+-
T Consensus 362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk 441 (677)
T KOG1915|consen 362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH
Confidence 33333222 235679999999999999999865 46888999999999999999999999999998744331
Q ss_pred HHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 001509 608 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 687 (1065)
Q Consensus 608 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 687 (1065)
....+ -.+. +.++....+|.+.|...|.|..+|...|.+-...|+.+.|..+|+-++....
T Consensus 442 --~YIel-ElqL------------~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---- 502 (677)
T KOG1915|consen 442 --GYIEL-ELQL------------REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA---- 502 (677)
T ss_pred --HHHHH-HHHH------------hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----
Confidence 11122 2333 8999999999999999999999999999999999999999999999987542
Q ss_pred CcchHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-----Hhh-----------cHHHHHHHH
Q 001509 688 VQMPDV-WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY-----EAE-----------QWQDCKKSL 750 (1065)
Q Consensus 688 ~~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~-----~~g-----------~~~~A~~~~ 750 (1065)
.++|.+ |-.....-...|.++.|..+|++.|... +...++...|..-. ..+ ....|..+|
T Consensus 503 ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt---~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~if 579 (677)
T KOG1915|consen 503 LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT---QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIF 579 (677)
T ss_pred cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc---ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHH
Confidence 245554 4455666678899999999999999873 33335544444333 334 556788889
Q ss_pred HHHHHhCC
Q 001509 751 LRAIHLAP 758 (1065)
Q Consensus 751 ~kal~~~P 758 (1065)
.+|.....
T Consensus 580 erAn~~~k 587 (677)
T KOG1915|consen 580 ERANTYLK 587 (677)
T ss_pred HHHHHHHH
Confidence 88877643
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.5e-17 Score=166.45 Aligned_cols=415 Identities=13% Similarity=0.063 Sum_probs=226.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1065)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1065)
.+.......+.+|...++-+.|+.....+..... .+...+.++..+-.-++..++.-.|...+...|--..+...+..
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r--~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR--SPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLE 172 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc--chhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHH
Confidence 3455666777777777777777765544322211 12334445555555555556666666666655533333222222
Q ss_pred HHHHccchHhHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001509 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN-YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1065)
Q Consensus 240 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1065)
.-... ++.+ ..-...+...|..+..+. ..+..+...+++..+...+-.+-.. ..-+.+...+..+|.+++..
T Consensus 173 l~v~g-----~e~~-S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~-~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 173 LGVNG-----NEIN-SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN-TTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred Hhhcc-----hhhh-hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh-ccCCccHHHHHHHhhhhhhh
Confidence 22111 1111 111122333444433332 2244444445554444433332221 12344555666666666666
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1065)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1065)
|++.+|+..|+++.. .+|..+...-..|.++...|+++.-..+...++.+......-|+.-+.+++..+++..|+.+
T Consensus 246 Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred cCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 666666666666554 34555555555566666666666666655555555544555555556666666666666666
Q ss_pred HHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH
Q 001509 399 LRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478 (1065)
Q Consensus 399 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1065)
-++++..+|.+.. .+...|.++...|+..+|+-.|+.+..
T Consensus 323 ~eK~I~~~~r~~~---------------alilKG~lL~~~~R~~~A~IaFR~Aq~------------------------- 362 (564)
T KOG1174|consen 323 VEKCIDSEPRNHE---------------ALILKGRLLIALERHTQAVIAFRTAQM------------------------- 362 (564)
T ss_pred HHHHhccCcccch---------------HHHhccHHHHhccchHHHHHHHHHHHh-------------------------
Confidence 6666666666553 344446666666666666666666655
Q ss_pred hhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHH-HHHH-HcCCHHHHH
Q 001509 479 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA-AIAK-ARNNLQLSI 556 (1065)
Q Consensus 479 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la-~~~~-~~g~~~~A~ 556 (1065)
..|....+|-.+..+|...|++.+|.-..+.++...|.++.++..+| .++. .-.--++|.
T Consensus 363 ------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 363 ------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 33445556666666666666666666666666666666666665554 2222 222335566
Q ss_pred HHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHH
Q 001509 557 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 636 (1065)
Q Consensus 557 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 636 (1065)
+++++++.+.|....+-..++.++...|.+..++..+++.+...+ |......||++ +... +.+++
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~~LH~~Lgd~-~~A~------------Ne~Q~ 489 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DVNLHNHLGDI-MRAQ------------NEPQK 489 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--ccHHHHHHHHH-HHHh------------hhHHH
Confidence 666666666666666666666666666666666666666665544 44455556666 5555 66666
Q ss_pred HHHHHHHHHhhCCcchHHHhHHH
Q 001509 637 AKELYTRVIVQHTSNLYAANGAG 659 (1065)
Q Consensus 637 A~~~~~~~l~~~p~~~~a~~~la 659 (1065)
|+..|..+|.++|++-.+.-++-
T Consensus 490 am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 490 AMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHhcCccchHHHHHHH
Confidence 66666666666666655555543
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.7e-16 Score=159.46 Aligned_cols=333 Identities=15% Similarity=0.128 Sum_probs=215.7
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCC
Q 001509 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 424 (1065)
.+.++.+.+..-.|.+|+.+|.+++..+|........++.||+++.-++-+.+++.-.+...|+++.+
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA------------ 221 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA------------ 221 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH------------
Confidence 34566666666677777777777777777777777777777777777777777777777777777643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHH
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 504 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 504 (1065)
.+..++.+++.=+-..|..-.+...... +...+.+
T Consensus 222 ---~NLkacn~fRl~ngr~ae~E~k~ladN~------------------------------------------~~~~~f~ 256 (557)
T KOG3785|consen 222 ---KNLKACNLFRLINGRTAEDEKKELADNI------------------------------------------DQEYPFI 256 (557)
T ss_pred ---HHHHHHHHhhhhccchhHHHHHHHHhcc------------------------------------------cccchhH
Confidence 3444555555433333333333332210 0000000
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhcccc
Q 001509 505 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 584 (1065)
Q Consensus 505 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 584 (1065)
-+.+-.-+.--.+-+.|+..+-..+..- +++..+|+..|..+++..+|+.+++. ++|..|.-+...|.++...|
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALG 330 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhh
Confidence 0000000000122345555554444433 45778888888888888888877765 67888888888888877777
Q ss_pred chHHHHHHHHHhh-------hcCCC-CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHh
Q 001509 585 DWVKAKETFRAAS-------DATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 656 (1065)
Q Consensus 585 ~~~~A~~~~~~al-------~~~~~-~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 656 (1065)
+--...++++-+- ..... ......-+++.. ++.. .+++.-+.++..+-...-++....+
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~------------~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS------------FQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH------------HHHHHHHHHHHHHHHHhcCcchhhh
Confidence 6433333333222 11111 122233456666 7777 8899999888888888888888889
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001509 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 736 (1065)
Q Consensus 657 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~ 736 (1065)
++++.++..|++.+|.++|-++....- .+.......|+.||...+.+..|..+|-+ .........++-.++..
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIAND 470 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHH
Confidence 999999999999999999988754321 12334455789999999999999988754 21112226677788999
Q ss_pred HHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 737 HYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 737 ~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
+|+.+++--|.+.|..+-.++|+.
T Consensus 471 CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHhhhHHHccCCCc
Confidence 999999999999999888888854
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=1.9e-19 Score=194.92 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=121.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHH
Q 001509 429 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 508 (1065)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 508 (1065)
..+|.+++..|++++|+.++.+.+... .+|.++..|..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 466999999999999999997765421 146678889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHH
Q 001509 509 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 588 (1065)
Q Consensus 509 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 588 (1065)
|.+....++++.|+..|++++..++.++..+.+++.+ ...+++.+|+.++..+.+..+ ++..+..+..++...++++.
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999888 799999999999999988764 57777788888999999999
Q ss_pred HHHHHHHhhhcCC-CCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCC
Q 001509 589 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 667 (1065)
Q Consensus 589 A~~~~~~al~~~~-~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 667 (1065)
+...+.++....+ ..++..+..+|.+ +... |+.++|+.+|++++..+|++..+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999775432 3577788889999 8888 999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 001509 668 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 747 (1065)
Q Consensus 668 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 747 (1065)
++++..++.......| .++.+|..+|.+|..+|++++|+.+|+++++. .+.++.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999888876 67889999999999999999999999999988 6788999999999999999999999
Q ss_pred HHHHHHHHh
Q 001509 748 KSLLRAIHL 756 (1065)
Q Consensus 748 ~~~~kal~~ 756 (1065)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999988753
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.80 E-value=3.8e-14 Score=153.58 Aligned_cols=628 Identities=12% Similarity=0.118 Sum_probs=419.1
Q ss_pred hcCCChHHHHHHHHHHHHcCCHH-HHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhc--hhhhhhhhhHHHHH
Q 001509 35 AEQAPLDLWLIIAREYFKQGKVE-QFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLG--KIETKQREKEEHFI 111 (1065)
Q Consensus 35 ~e~~~~~~~~~~a~~y~~~g~~~-~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g--~~~~~~~~k~~~~~ 111 (1065)
..|-+...|..... +++|... +-..+|++++..-+.+ +.+...|++.- .+. .....+.-|.
T Consensus 22 Rnp~svk~W~RYIe--~k~~sp~k~~~~lYERal~~lp~s-------------ykiW~~YL~~R~~~vk-~~~~T~~~~~ 85 (835)
T KOG2047|consen 22 RNPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKELPGS-------------YKIWYDYLKARRAQVK-HLCPTDPAYE 85 (835)
T ss_pred cCchhHHHHHHHHH--HHccCChHHHHHHHHHHHHHCCCc-------------hHHHHHHHHHHHHHhh-ccCCCChHHH
Confidence 35567778866433 3444444 4455678876542211 12333333211 111 0011244566
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1065)
.--.+|++++..-..-|..|+.....+..+|+...-...|+++|..-|- +...|-..-......+-..-++..|++.|
T Consensus 86 ~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 86 SVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7788888888877778899999999999999999999999999998773 45566666666777888899999999999
Q ss_pred HhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Q 001509 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1065)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1065)
+..|.. .-.....+...+++++|.+.+...+.. .|.+...|..+..+....-+...--..-..++..+.
T Consensus 166 k~~P~~----~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 166 KVAPEA----REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred hcCHHH----HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 999987 233456677889999999999988754 345667788787777665442222223345666666
Q ss_pred hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH-H-HHHhcCCCC
Q 001509 263 IYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM-A-SVKEINKPH 339 (1065)
Q Consensus 263 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~-al~~~~~~~ 339 (1065)
..++. ...|..||..|.+.|.+++|..+|+.++...-...+...++... -.|++..-.+. . +.....+..
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Y-------a~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAY-------AQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHH-------HHHHHHHHHHHHhhhhhcccChh
Confidence 66654 46788899999999999999999999886542222111111111 11211111100 0 100111111
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHH
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQARTLLKK 418 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~l~~ 418 (1065)
+....-..++..-.-......-+ =.-++..+|.+..-|.....++ .|+..+-+..|..++. .+|...
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~l--NsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka-------- 382 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLL--NSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKA-------- 382 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHH--HHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccC--------
Confidence 11122222222211111111111 1123456888888887766654 6788899999998876 455433
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCC
Q 001509 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 498 (1065)
Q Consensus 419 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 498 (1065)
...+..+|..+|.+|...|+.+.|...|.++..... ..-
T Consensus 383 --~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y---------------------------------------~~v 421 (835)
T KOG2047|consen 383 --VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY---------------------------------------KTV 421 (835)
T ss_pred --CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc---------------------------------------cch
Confidence 112236899999999999999999999999986321 012
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC------------------ChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 499 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------------------DYVDAYLRLAAIAKARNNLQLSIELVN 560 (1065)
Q Consensus 499 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~a~~~la~~~~~~g~~~~A~~~~~ 560 (1065)
.+...+|.+.|..-....+++.|+.+.+.+...-. .....|..++.+....|-++.....|+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 23578899999999999999999999998874211 113467778888888999999999999
Q ss_pred HHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHH-HHhhHHHHHHHHHhhhhcChhHHhhhHHHHHH
Q 001509 561 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA-TLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 639 (1065)
Q Consensus 561 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~-~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 639 (1065)
+++.+---.|.+..+.|.++....-++++.+.|++.+.+.+.+..+- |...... +.. +... ...+.|..
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk-fi~--rygg-------~klEraRd 571 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK-FIK--RYGG-------TKLERARD 571 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH-HHH--HhcC-------CCHHHHHH
Confidence 99999988999999999999999999999999999999887766552 2221111 111 1111 67899999
Q ss_pred HHHHHHhhCCcc--hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHc----CCHHHHHHH
Q 001509 640 LYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ----GNFALAMKM 713 (1065)
Q Consensus 640 ~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~ 713 (1065)
+|+++|..-|.. -..+...+.+-.+.|....|+.+|+++-...+ +.-.+.+=++|... =-...-..+
T Consensus 572 LFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~-------~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 572 LFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK-------EAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 999999988752 23344456666677999999999999876553 22233333333321 012345678
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 714 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 714 ~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
|++|++..|+..-...-...+..-.+.|..+.|+.+|.-.-++.|-
T Consensus 645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 9999998665555666777888888999999999999988887643
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=1.7e-16 Score=180.83 Aligned_cols=303 Identities=15% Similarity=0.070 Sum_probs=246.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
.+..|...+..|+++.|...+.++.+..|+....++..|.++...|+++.|..+|.++.+..|++...+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 35678888999999999999999999999888899999999999999999999999999999988445667679999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (1065)
|+++.|...++.+++..|+++.++..++.++...|+ ++.|...+.+..+..+.++.... .....+...+..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999987655544332 12222233344444
Q ss_pred HHHHHHHHHhccC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 287 A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
....+..+....+ ..+..+..+..++..+...|++++|...+.++++..++++.... ...........++...++..+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHH
Confidence 4455555555432 22357899999999999999999999999999985443322110 122333344568899999999
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 001509 366 EKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 441 (1065)
Q Consensus 366 ~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~ 441 (1065)
++.++.+|+++ ..+..+|.++++.|++++|..+|+ .++...|+.. .+..+|.++...|+.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~----------------~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN----------------DLAMAADAFDQAGDK 386 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH----------------HHHHHHHHHHHcCCH
Confidence 99999999999 889999999999999999999999 5777888765 355889999999999
Q ss_pred HHHHHHHHHHHc
Q 001509 442 ESAHQSFKDALG 453 (1065)
Q Consensus 442 ~~A~~~~~~al~ 453 (1065)
++|..+|++++.
T Consensus 387 ~~A~~~~~~~l~ 398 (409)
T TIGR00540 387 AEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=5e-17 Score=161.76 Aligned_cols=242 Identities=19% Similarity=0.213 Sum_probs=111.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHH
Q 001509 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1065)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1065)
+|.+|+..|-+..|.+.++..+... ..++.+..++.+|.+..+...|+..|...++ .-|..+..+..++.++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~----~~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF----PHPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC----CchhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhhhhhHHHHH
Confidence 4444444444444444444444432 1234444444444444444444444444444 22333444444444444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
.++++++|+++|+.+++.+|.+.++.-.+|.-|+-.++.+-|+.+|++++.+.-.++ ++++|+|.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp---------------eLf~NigL 366 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP---------------ELFCNIGL 366 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh---------------HHHhhHHH
Confidence 444444444444444444444444444444444444444444444444444443333 34444444
Q ss_pred HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 513 (1065)
+++-.++++-++..|++++.... .+.....+|||+|.+..
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat----------------------------------------~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTAT----------------------------------------QPGQAADVWYNLGFVAV 406 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhcc----------------------------------------CcchhhhhhhccceeEE
Confidence 44444444444444444443210 11223344444444444
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhh
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 577 (1065)
..|++..|...|+-++..+|++..++++|+.+..+.|+..+|..+++.+-...|.-.+..++++
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 4444444444444444444444444444444444444444444444444444444444444443
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1e-16 Score=189.48 Aligned_cols=252 Identities=12% Similarity=-0.014 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC
Q 001509 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1065)
+.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.++..+|.++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccC
Confidence 3567777777777777777777777777665533 23667777777777777777 5566777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1065)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1065)
+++|+..|+++++++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.+++..|++++|+..+.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 7777777777777777777777777777777777 7777777777777777776665555656666777777777777
Q ss_pred HHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (1065)
Q Consensus 293 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (1065)
+++... .|..+.++..+|.++...|++++|...+.++.. ..|....+...++..|...|+ .|...++.+++..
T Consensus 431 ~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 431 ELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 766542 244556677777777777777777777776654 445555566666667666663 6666666655543
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
-..+.....+..+|.-.|+.+.+..+ +++.+.
T Consensus 504 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 504 QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22222223366667777777777666 555543
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=7e-19 Score=190.54 Aligned_cols=262 Identities=24% Similarity=0.289 Sum_probs=96.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 167 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1065)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1065)
.+|.+++..|++++|+.++.+.+... |++ ..+|..+|.+...+++++.|+.+|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666665444333 444 45566666666666666666666666666666666666566555 455
Q ss_pred cchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001509 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1065)
Q Consensus 245 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1065)
++ +.+|+.++..+++..+ ++..+..++.++...+++.++..++..+.... ..+.++..+..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 55 6666666666665443 45555556666666777777777766655422 2245567777777777777777777
Q ss_pred HHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
+.+|++++. ..|+...+...++.+++..|+++++...+.......|.++..+..+|.++...|++++|+.+|++++.
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 777777777 34566666777777777777777777777777776677777777778888888888888888888777
Q ss_pred hCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 405 ~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
.+|+++ .++..+|.++...|+.++|..++.+++.
T Consensus 243 ~~p~d~---------------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDP---------------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-H---------------HHHHHHHHHHT-----------------
T ss_pred cccccc---------------cccccccccccccccccccccccccccc
Confidence 777777 4566777777788888888777777664
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=8.3e-18 Score=167.23 Aligned_cols=267 Identities=17% Similarity=0.191 Sum_probs=241.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 001509 136 QLLLAKGEVEQASSAFKIVLEAD---RD-------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1065)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1065)
.+++..++...|-..+..++... |. +..--..+|.||++.|-+.+|...++..+...|-. +.+..+..
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 34556677888877777666542 21 11222578999999999999999999999998875 67889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001509 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1065)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1065)
+|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+.++...++.-|+..++.+
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
-|+.+|.+++... ...++.+.++|.|++..++++-++..|.+++.....+.....+|+++|.+....|++..|..+|
T Consensus 342 ~AlryYRRiLqmG---~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMG---AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhc---CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 9999999999885 4556999999999999999999999999999877667778899999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 410 (1065)
+-++..+|++.+++++||.+-.+.|+.+.|..++..+-...|...
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 999999999999999999999999999999999999999999866
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=1.5e-16 Score=188.14 Aligned_cols=217 Identities=16% Similarity=0.090 Sum_probs=136.9
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccch
Q 001509 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1065)
.+.+|+.+|++++.++|++ ..++..+|.|+..++ ++.+|+..++++++++|+++.++..+|.++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~- 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE- 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-
Confidence 3456666777777777766 555666666655332 25667777777777777777766666666666666
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001509 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1065)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1065)
+++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |..+..++.++.+++..|++++|+..
T Consensus 354 --~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 --YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 6667777777777777777666667777777777777777777766664 33334444455555666667667766
Q ss_pred HHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
+.+++.. .+|....++..+|.++...|++++|+..+.++....|....++..++.+|...|+ .|...++++++
T Consensus 429 ~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 6666542 1244455566666666667777777777666666666666666666666666663 55555554443
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.77 E-value=1.5e-12 Score=141.55 Aligned_cols=309 Identities=14% Similarity=0.160 Sum_probs=208.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHH
Q 001509 432 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 511 (1065)
Q Consensus 432 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 511 (1065)
-.+-+..|+..+-+..|..|+..-. . .........+|..+|.+
T Consensus 354 kRV~l~e~~~~~~i~tyteAv~~vd------P-------------------------------~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 354 KRVKLYEGNAAEQINTYTEAVKTVD------P-------------------------------KKAVGSPGTLWVEFAKL 396 (835)
T ss_pred hhhhhhcCChHHHHHHHHHHHHccC------c-------------------------------ccCCCChhhHHHHHHHH
Confidence 3445567889999999999886310 0 00122245688999999
Q ss_pred HHHcCChHHHHHHHHHHHHHCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------------C
Q 001509 512 LEQIHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------------------Y 569 (1065)
Q Consensus 512 ~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~ 569 (1065)
|...|+.+.|..+|++++...-.. ..+|...|.+-+...+++.|+.+++.+...... +
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 999999999999999998754332 668999999999999999999999998765321 2
Q ss_pred hHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhC-
Q 001509 570 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH- 648 (1065)
Q Consensus 570 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~- 648 (1065)
..+|..++.+....|-++.....|.+++.+.-. .+...++.+.+ +... ..++++.+.|++-+.+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmf-LEeh------------~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMF-LEEH------------KYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHH-HHhh------------HHHHHHHHHHHcCCccCC
Confidence 357778888888888888888888888875432 44445555554 4444 78888999998888875
Q ss_pred -CcchHHHhHHHHHHHh---cCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Q 001509 649 -TSNLYAANGAGVVLAE---KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 724 (1065)
Q Consensus 649 -p~~~~a~~~la~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 724 (1065)
|.-...|+..-..+.. ...++.|..+|+++++..|.. ..-.+|+..+..--.-|--..|+..|++|-......
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~---~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a 619 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE---HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA 619 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH
Confidence 4444455554433332 237888999999999877621 223455566666667788888899998876552111
Q ss_pred CcHHHHH-HHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHH
Q 001509 725 TDAQILL-YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVF 803 (1065)
Q Consensus 725 ~~~~~~~-~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~ 803 (1065)
..-..+. ++.++-.--| ....+.+|++|++.-|++..-- +|+.+ .+++..+++...|..++
T Consensus 620 ~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~----mclrF-------------AdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKARE----MCLRF-------------ADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHH----HHHHH-------------HHHhhhhhhHHHHHHHH
Confidence 1111111 1122211112 2346778888888888765443 33222 26888899999999999
Q ss_pred HHHhhcCCC
Q 001509 804 SHLSAASNL 812 (1065)
Q Consensus 804 ~~l~~~~~~ 812 (1065)
..-+..-++
T Consensus 682 a~~sq~~dP 690 (835)
T KOG2047|consen 682 AHGSQICDP 690 (835)
T ss_pred HhhhhcCCC
Confidence 887766544
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.6e-14 Score=155.78 Aligned_cols=228 Identities=15% Similarity=0.104 Sum_probs=118.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCH
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1065)
-...+...|+|++|.....+++...|++..++...-.++++.++|++|+.+.+.-....-.+ ...+..+.|+++++..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~--~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN--SFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc--hhhHHHHHHHHHcccH
Confidence 33444455556666666666666666666666555556666666666653332221111111 1124556666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1065)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1065)
++|+..+. ..++.+...+...++++++.++ |++|+..|+...+.+.++..........-... ..-..
T Consensus 96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~---ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~~ 162 (652)
T KOG2376|consen 96 DEALKTLK---GLDRLDDKLLELRAQVLYRLER---YDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQVQ 162 (652)
T ss_pred HHHHHHHh---cccccchHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhHH
Confidence 66666555 2344444555555666666555 66666666665555444333222111110000 00000
Q ss_pred HHhccCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCCC--------CchhhhhhHHHHHHHcCCHHH
Q 001509 294 ALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKPH--------EFIFPYYGLGQVQLKLGDFRS 360 (1065)
Q Consensus 294 al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~--------~~~~~~~~la~~~~~~g~~~~ 360 (1065)
.+...+.. ....+.+|+.+.++...|+|.+|++.+..++... .... ....+...++.++...|+..+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11111112 2345677778888888888888888887774321 1100 112345566777777777777
Q ss_pred HHHHHHHHHHhCCCcH
Q 001509 361 ALTNFEKVLEIYPDNC 376 (1065)
Q Consensus 361 A~~~~~~~l~~~p~~~ 376 (1065)
|..+|..++..+|.+.
T Consensus 243 a~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 7777777777666554
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=3.6e-15 Score=169.87 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
+|+|..|.+.+.++.+..|.....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44566999999999999998888889999999999999999999999999999885 56677899999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHccchHhHHHHHHHHHHHH
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAF 261 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~la~~~~~~~~~~~~~~A~~~~~~al 261 (1065)
+.+++..|++ +.++..++.++...|+++.|...+.+..+..+.+...+. ....-....+. .+.+...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 678999999999999999999999999987554444322 11111122222 445566777888
Q ss_pred HhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001509 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1065)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1065)
...| +++.++..++..+...|++++|...++.+++..+.++.... ...........++...++..++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 8777 59999999999999999999999999999997654332111 12333344456889999999999998 4
Q ss_pred CCCch--hhhhhHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
.|+.. .....+|.++++.|++++|..+|+ .++...|+... +..+|.++.+.|+.++|..+|++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666 778899999999999999999999 57778887655 569999999999999999999998764
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=2.3e-15 Score=170.50 Aligned_cols=296 Identities=13% Similarity=0.034 Sum_probs=232.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
.+..|...+..|+++.|...+.+.....+.....++..+.+....|+++.|..+|.++.+..|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988877655443333444444666699999999999999999999998444455668999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHH--------HHHHHHcC
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--------ANHFFFTG 282 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------a~~~~~~g 282 (1065)
|+++.|...++++++.+|+++.++..++.++...|+ +++|+..+..+.+..+.++.....+ ........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 9999999999988777655433311 11111122
Q ss_pred CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHH
Q 001509 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1065)
Q Consensus 283 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1065)
+-+....++... ....+.++.+...++..+...|+.++|...+.++++. ++ ...... ....+..+++.+++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~-~~~l~~--l~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QY-DERLVL--LIPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-CHHHHH--HHhhccCCChHHHH
Confidence 222222222222 2224667899999999999999999999999999872 22 222222 22333559999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 001509 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 442 (1065)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~ 442 (1065)
..+++.++.+|+++..+..+|.++...+++++|..+|++++...|++. .+..++.++...|+.+
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~----------------~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY----------------DYAWLADALDRLHKPE 378 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH----------------HHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999876 3567899999999999
Q ss_pred HHHHHHHHHHcc
Q 001509 443 SAHQSFKDALGD 454 (1065)
Q Consensus 443 ~A~~~~~~al~~ 454 (1065)
+|..+|++++..
T Consensus 379 ~A~~~~~~~l~~ 390 (398)
T PRK10747 379 EAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhh
Confidence 999999999874
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.8e-15 Score=149.95 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=145.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHH
Q 001509 137 LLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (1065)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 215 (1065)
-++...+|..|+.+++-.+..+.... ..-+++|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 34566788888888887765544332 566778888888899998888888877633 3346778888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1065)
Q Consensus 216 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1065)
|...-.+ .|+++-....+-.+..+.++. +-+-.|...+.
T Consensus 110 A~~~~~k----a~k~pL~~RLlfhlahklndE----k~~~~fh~~Lq--------------------------------- 148 (557)
T KOG3785|consen 110 AKSIAEK----APKTPLCIRLLFHLAHKLNDE----KRILTFHSSLQ--------------------------------- 148 (557)
T ss_pred HHHHHhh----CCCChHHHHHHHHHHHHhCcH----HHHHHHHHHHh---------------------------------
Confidence 8776665 455665555555555555541 11111111111
Q ss_pred hccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
+..+-...++.+++..-.|.+|+..|.+++. .+|.+......++.||+++.-|+-+.+.+.-.+...|++
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 1124455677777777888999999998887 667777777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 001509 376 CETLKALGHIYVQLGQ 391 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~ 391 (1065)
+.+.+.++..+++.=+
T Consensus 219 tiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9888888888777633
No 70
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.5e-16 Score=162.38 Aligned_cols=313 Identities=16% Similarity=0.150 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1065)
.-....|..++...+|.+|+..|..++...|++ ...|...+.++...|+|+.|.-..+..++++|.........+.++.
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 345666777777777777777777777777777 5667777777777777777777777777777777776666666666
Q ss_pred HccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHH
Q 001509 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1065)
Q Consensus 243 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1065)
..++ ..+|...++. . .++ ...
T Consensus 129 a~~~---~i~A~~~~~~--------~-------------------------------------~~~-----------~~a 149 (486)
T KOG0550|consen 129 ALSD---LIEAEEKLKS--------K-------------------------------------QAY-----------KAA 149 (486)
T ss_pred hhHH---HHHHHHHhhh--------h-------------------------------------hhh-----------HHh
Confidence 6655 4444444330 0 000 112
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1065)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 402 (1065)
.|+..++..+......|....+.+..+.|+...|++++|+..--.++++++.+..+++..|.+++-.++.+.|+..|+++
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qa 229 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQA 229 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhh
Confidence 23333333332222234445566778899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhh
Q 001509 403 AKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 482 (1065)
Q Consensus 403 l~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1065)
+.++|+...+....... ...+.+..-|.-.++.|++..|.++|..++.+.|.
T Consensus 230 l~ldpdh~~sk~~~~~~---k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~------------------------- 281 (486)
T KOG0550|consen 230 LRLDPDHQKSKSASMMP---KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS------------------------- 281 (486)
T ss_pred hccChhhhhHHhHhhhH---HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-------------------------
Confidence 99999987643322110 11256778899999999999999999999986552
Q ss_pred hhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 483 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 562 (1065)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 562 (1065)
....++.+|.+.+.+...+|+..+|+...+.++.++|.++.++.+.|.++...++|++|++.|+++
T Consensus 282 --------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 282 --------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred --------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223377889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCChHHHHHhhh
Q 001509 563 LKVNGKYPNALSMLGD 578 (1065)
Q Consensus 563 l~~~p~~~~~~~~l~~ 578 (1065)
++...+ .+....+..
T Consensus 348 ~q~~~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 348 MQLEKD-CEIRRTLRE 362 (486)
T ss_pred Hhhccc-cchHHHHHH
Confidence 998765 555444433
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=6e-16 Score=148.29 Aligned_cols=208 Identities=23% Similarity=0.192 Sum_probs=187.9
Q ss_pred hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCC
Q 001509 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGE 421 (1065)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 421 (1065)
..+.+.+|.-|+..|++..|...++++++++|++..+|..++.+|...|..+.|.+.|++++.+.|++.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----------- 103 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----------- 103 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-----------
Confidence 356788999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCch
Q 001509 422 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 501 (1065)
Q Consensus 422 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 501 (1065)
++++|.|.+++.+|++++|...|.+|+... ..+..
T Consensus 104 ----dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P-----------------------------------------~Y~~~ 138 (250)
T COG3063 104 ----DVLNNYGAFLCAQGRPEEAMQQFERALADP-----------------------------------------AYGEP 138 (250)
T ss_pred ----chhhhhhHHHHhCCChHHHHHHHHHHHhCC-----------------------------------------CCCCc
Confidence 589999999999999999999999999732 34557
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhc
Q 001509 502 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 581 (1065)
Q Consensus 502 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 581 (1065)
+.++.|+|.|..+.|+++.|..+|++++..+|+.+.+...++..++..|++..|..+++......+-..+.+.....+-.
T Consensus 139 s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak 218 (250)
T COG3063 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAK 218 (250)
T ss_pred chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred cccchHHHHHHHHHhhhcCCCCCh
Q 001509 582 KNDDWVKAKETFRAASDATDGKDS 605 (1065)
Q Consensus 582 ~~g~~~~A~~~~~~al~~~~~~d~ 605 (1065)
..|+-..|..+=.++...+|....
T Consensus 219 ~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 219 RLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HhccHHHHHHHHHHHHHhCCCcHH
Confidence 889988888877777777776443
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=2.6e-15 Score=162.54 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHhhcCC---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001509 108 EHFILATQYYNKASRIDM---H-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p---~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1065)
...+.++..+.+++...| . .+..|+.+|.++...|+++.|+..|.+++..+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445578888888886433 2 356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHh
Q 001509 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1065)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1065)
.|+++++++|++ ..+++.+|.+++..|++++|+..|++++..+|+++.....+ .+....++ +.+|+..+.+....
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 67789999999999999999999999999999887422222 22233444 88888888776654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1065)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1065)
.+... |. .+..++..|++..+ ..+..+...... .|..+.+|+.+|.++...|++++|+.+|++++.
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32221 21 23444445555433 233333322111 122334444455555555555555555544443
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=5.5e-16 Score=167.32 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=209.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHH
Q 001509 429 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 508 (1065)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 508 (1065)
+..|+.+++.|+..+|.-.|+.++. .+|.++.+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 4569999999999999999999987 678899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH-------hhhhhc
Q 001509 509 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM-------LGDLEL 581 (1065)
Q Consensus 509 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------l~~~~~ 581 (1065)
|.+....++-..|+..+.++++++|++..++..||..|...|.-.+|..++.+.+...|........ ...-..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999888754322211 000112
Q ss_pred cccchHHHHHHHHHhhhcCC-CCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 582 KNDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 582 ~~g~~~~A~~~~~~al~~~~-~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
....+....+.|-.+....+ ..|+.....||.+ |+.. +.|++|+.+|+.+|..+|+|...|+.||-
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 22234455566666555444 3688888899999 8888 99999999999999999999999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC---c-----HHHHHH
Q 001509 661 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---D-----AQILLY 732 (1065)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~-----~~~~~~ 732 (1065)
.+....+..+|+..|++++++.| ....+++|||.+|+.+|-|.+|+.+|-.||...+... + ..+|-.
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 99999999999999999999998 6778999999999999999999999999998754421 1 245555
Q ss_pred HHHHHHHhhcHHHH
Q 001509 733 LARTHYEAEQWQDC 746 (1065)
Q Consensus 733 lg~~~~~~g~~~~A 746 (1065)
|=.++...++.+-+
T Consensus 548 LR~als~~~~~D~l 561 (579)
T KOG1125|consen 548 LRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHcCCchHH
Confidence 55555555555533
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=2.7e-14 Score=161.69 Aligned_cols=284 Identities=12% Similarity=0.092 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCChHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVG-KGQLLLAKGEVEQASSAFKIVLEADRDNVPA-LLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~~g~~~~Al~~~ 185 (1065)
|+|..|.+.+.+.....+ +|..++. .+......|+++.|..+|.++.+.+|++..+ ....+.++...|+++.|+..+
T Consensus 98 Gd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455588888887665543 3444444 4667799999999999999999999998544 445599999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHccchHhHHHHHHHH
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--------ALAVMDLQANEAAGIRKGMEKM 257 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------~la~~~~~~~~~~~~~~A~~~~ 257 (1065)
+++...+|++ +.++..++.+|...|+++.|+..+.++.+..+.+..... .+........+ .+.....+
T Consensus 177 ~~~~~~~P~~-~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~---~~~l~~~w 252 (398)
T PRK10747 177 DKLLEVAPRH-PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG---SEGLKRWW 252 (398)
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence 9999999999 778899999999999999999999999987776544322 11111111111 34444455
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001509 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1065)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1065)
+..-...|+++.+...++..+...|+.++|...+..+++.. .++......+. ...+++++++..++..++ .
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~----~~~~l~~l~~~--l~~~~~~~al~~~e~~lk---~ 323 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ----YDERLVLLIPR--LKTNNPEQLEKVLRQQIK---Q 323 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHHHHHHhh--ccCCChHHHHHHHHHHHh---h
Confidence 55555667899999999999999999999999999998842 23333333333 345999999999999998 6
Q ss_pred CCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
.|+....++.+|.++...+++.+|...|++++...|++ ..+..++.++...|+.++|..+|++++.+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 67888889999999999999999999999999999985 556789999999999999999999998754
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=164.34 Aligned_cols=234 Identities=16% Similarity=0.206 Sum_probs=188.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC
Q 001509 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1065)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1065)
+..|..+++.|++.+|.-+|+.+++.+|.++.+|..+|.+....++-..|+..++++++++|++ ..++..||.+|...|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N-leaLmaLAVSytNeg 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN-LEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc-HHHHHHHHHHHhhhh
Confidence 5679999999999999999999999999999999999999999999999999999999999999 778899999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------cchHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCC
Q 001509 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQA------NEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQ 283 (1065)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~ 283 (1065)
.-..|..++.+-+...|....... +..-... -+...+..-.+.|-.+....| .++.+...||.+|...|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~--a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVS--AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccc--cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999999999888775332111 0000000 001124455566667777777 688888888888888888
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHH
Q 001509 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363 (1065)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 363 (1065)
|++|+..|+.++.. .|.+...|..||-.+....+..+|+..|.++++ ..|.++.+++++|.+++.+|.|.+|+.
T Consensus 446 fdraiDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 88888888888876 477778888888888888888888888888887 568888888888888888888888888
Q ss_pred HHHHHHHhCCC
Q 001509 364 NFEKVLEIYPD 374 (1065)
Q Consensus 364 ~~~~~l~~~p~ 374 (1065)
+|-.+|.+.+.
T Consensus 520 hlL~AL~mq~k 530 (579)
T KOG1125|consen 520 HLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhhhc
Confidence 88888877554
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=3.2e-15 Score=161.90 Aligned_cols=241 Identities=18% Similarity=0.104 Sum_probs=183.5
Q ss_pred HcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhH
Q 001509 52 KQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTW 131 (1065)
Q Consensus 52 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~ 131 (1065)
..+..+.++..+.+++.... -....+...++.+|.+|...|... .|+..|++++.++|+++.+|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~Al~l~P~~~~a~ 101 (296)
T PRK11189 38 PTLQQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRA-----------LARNDFSQALALRPDMADAY 101 (296)
T ss_pred CchHHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHcCCCCHHHH
Confidence 34566778888877765321 112356778999999999998876 89999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC
Q 001509 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1065)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1065)
+.+|.++...|+++.|+..|+++++++|++..++..+|.+++..|++++|+..|++++..+|+++ . +.....+....+
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-~-~~~~~~l~~~~~ 179 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-Y-RALWLYLAESKL 179 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-H-HHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999983 2 222233455678
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchH---hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001509 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA---GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (1065)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (1065)
++++|+..|.+++...+... |. .+.+.+..|+.. .+..+...+....++.|..+.+++.+|.++...|++++|+
T Consensus 180 ~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 180 DPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred CHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999988765533222 21 344444445411 1222223333444667788899999999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHH
Q 001509 289 QLTETALAVTNHGPTKSHSYYNLARSY 315 (1065)
Q Consensus 289 ~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1065)
..|++++...+ +...+..+.+....
T Consensus 257 ~~~~~Al~~~~--~~~~e~~~~~~e~~ 281 (296)
T PRK11189 257 ALFKLALANNV--YNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHH
Confidence 99999998742 24444444444433
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-15 Score=157.86 Aligned_cols=274 Identities=19% Similarity=0.206 Sum_probs=230.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
+...|..|+..|+.++...|++...|..++..++..|+|+.|....++.+++.|.........+.++...+...+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 46678899999999999999999999999999999999999999999999999998888888888888888777776555
Q ss_pred HHHH------------HhC------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccch
Q 001509 186 KRAL------------QVH------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1065)
Q Consensus 186 ~~al------------~~~------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1065)
+..- .+- |.+ ..+.+..+.|+..+|+++.|...--..+++++.+.++++..|.+++...+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 4211 111 222 34566788999999999999999999999999999999999999998888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001509 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1065)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1065)
.+.|+..|++++.++|.+..+-... + .+.....+..-|.-.++.|+|..|..+
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~----~---------------------~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSAS----M---------------------MPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHh----h---------------------hHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 9999999999999999766432111 0 133346777889999999999999999
Q ss_pred HHHHHHhcCC-CCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 328 YMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 328 ~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
|..++..-|. ...++..|.+++.+...+|+..+|+..++.++.++|....++...|.|+..+++|++|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999985442 233456788999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 001509 407 PR 408 (1065)
Q Consensus 407 p~ 408 (1065)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 66
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=1.1e-14 Score=139.59 Aligned_cols=208 Identities=21% Similarity=0.210 Sum_probs=183.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1065)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1065)
..+++.+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+ .+.|-+.|++++.++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45678888888888888888888888888888888888888888888888 888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcC
Q 001509 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1065)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1065)
.++.+|.+++|...|.+++... .-+..+.++.++|.|..+.|+++.|..+|.+++. .+|.+..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888888753 3456778999999999999999999999999998 56778888999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001509 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411 (1065)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 411 (1065)
+|-.|..+++......+-....+.....+-...|+.+.+-.+=.++-...|....
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999999888888888888899999999999999998888889998875
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=6.5e-15 Score=155.52 Aligned_cols=204 Identities=24% Similarity=0.229 Sum_probs=173.0
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
.....++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++...|.+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------- 99 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--------- 99 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------
Confidence 34566788888888899999999999998888888888888999999999999999999999998888776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
.++.++|.++...|++++|+.+|.+++... ..+
T Consensus 100 ------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------------------~~~ 132 (234)
T TIGR02521 100 ------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-----------------------------------------LYP 132 (234)
T ss_pred ------HHHHHHHHHHHHcccHHHHHHHHHHHHhcc-----------------------------------------ccc
Confidence 467788889999999999999998887521 123
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhh
Q 001509 500 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579 (1065)
Q Consensus 500 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 579 (1065)
.....++.+|.++...|++++|...+.+++...|++..++..++.++...|++++|..++++++...|.++..+..++.+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35567888899999999999999999999999998888899999999999999999999999998888888888888899
Q ss_pred hccccchHHHHHHHHHhhhc
Q 001509 580 ELKNDDWVKAKETFRAASDA 599 (1065)
Q Consensus 580 ~~~~g~~~~A~~~~~~al~~ 599 (1065)
+...|+++.|..+.+.+...
T Consensus 213 ~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 213 ARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHhhHHHHHHHHHHHHhh
Confidence 98999999998887766543
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=1.3e-14 Score=153.23 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1065)
Q Consensus 83 ~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1065)
...+..+|.+|...|+.. +|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 455666666666666544 677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
.++..+|.++...|++++|+..|.+++... |.. ...+..+|.++...|++++|...|.+++..+|.+..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 777777777777777777777777776643 222 34566667777777777777777777777777766667777777
Q ss_pred HHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1065)
+...|+ +++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777666 677777777766666666666656666666666666655554443
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4e-13 Score=134.72 Aligned_cols=239 Identities=21% Similarity=0.260 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc----hHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGL 205 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~ 205 (1065)
.-+..|..++-..+.++|+..|-.+++.+|....+.+.+|..+...|..+.|+.+.+..+. .|+.+ ..+...+|.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999887665 55552 345677888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001509 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1065)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1065)
-|...|-++.|...|...+....--..++..|..+|....+ +.+|+....+..++.+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~--------------- 177 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV--------------- 177 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh---------------
Confidence 89999999999999988876554456667777777777766 777777777776666543211
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
..++.|..++..+....+++.|+..+.++++ .+|..+.+-+.+|.+....|+|..|++.+
T Consensus 178 -----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 178 -----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred -----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHH
Confidence 1123444444444444555555555555544 33444444444555555555555555555
Q ss_pred HHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 366 EKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1065)
Q Consensus 366 ~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 407 (1065)
+.+++.+|.. +.+...|..+|.+.|+.++.+.++.++....+
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 5555444443 33444444444444444444444444444433
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.7e-13 Score=135.88 Aligned_cols=297 Identities=22% Similarity=0.187 Sum_probs=219.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC-----HHHHHHHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC-----AMALNYLA 275 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la 275 (1065)
+..|.-+.-..+.++|+..|..+++.+|...++.+.||.++...|+ .+.|+..-+..+. .|+- ..++..||
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE---vDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE---VDRAIRIHQTLLE-SPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch---HHHHHHHHHHHhc-CCCCchHHHHHHHHHHH
Confidence 4456666777788888888888888888888888888888888888 8888887666554 3432 35677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--CchhhhhhHHHHHH
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH--EFIFPYYGLGQVQL 353 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~ 353 (1065)
.-|...|-++.|+.+|....... .....+...+..+|....+|++|+..-.+..+..+.+. .....+..+++.+.
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 88888888888888888877543 34457788888889999999999988888776543222 22344566778888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
...+++.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|.... +++..+..
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~--------------evl~~L~~ 257 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS--------------EVLEMLYE 257 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH--------------HHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999998887764 67888888
Q ss_pred HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 513 (1065)
+|...|+.++.+..+.++.+..+ .+.+...++.+..
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~--------------------------------------------g~~~~l~l~~lie 293 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNT--------------------------------------------GADAELMLADLIE 293 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccC--------------------------------------------CccHHHHHHHHHH
Confidence 89999999998888888876321 3344555666666
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA---RNNLQLSIELVNEAL 563 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al 563 (1065)
...-.+.|..++.+-+..+|+.. ..+++...... .|...+.+..++.++
T Consensus 294 ~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 294 LQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 66777888888888888888743 33344333332 223444444444443
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.66 E-value=8.5e-14 Score=155.67 Aligned_cols=259 Identities=25% Similarity=0.272 Sum_probs=205.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--
Q 001509 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-- 335 (1065)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 335 (1065)
..|.-..+...++..|...|+|+.|+.+++.++... ...+........+|.+|..+++|.+|+.+|++++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456667777789999999999999999999988752 1234445556679999999999999999999999754
Q ss_pred ---CCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 336 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 336 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
..+|..+.++.+||.+|...|++.+|..++++++.+. |.-...+..++.++...+++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2567778889999999999999999999999999863 33356788899999999999999999999988
Q ss_pred hCCCcHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhh
Q 001509 405 IDPRDAQARTLLKKAGEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 482 (1065)
Q Consensus 405 ~~p~~~~a~~~l~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1065)
+.-+-+ +.. ..+.++.++|.+|+.+|++.+|..+|++++.......
T Consensus 354 i~~~~~---------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~----------------------- 401 (508)
T KOG1840|consen 354 IYLDAP---------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL----------------------- 401 (508)
T ss_pred HHHhhc---------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-----------------------
Confidence 643111 111 1247899999999999999999999999997421000
Q ss_pred hhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------CCChHHHHHHHHHHHHHcCCHHHH
Q 001509 483 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLS 555 (1065)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~g~~~~A 555 (1065)
....+.....+.++|..|.+.+.+..|..+|..++.+ +|+....|.+|+.+|..+|+++.|
T Consensus 402 ------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 402 ------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred ------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 0023445678889999999999999999999887753 345567888888889999999888
Q ss_pred HHHHHHHHHH
Q 001509 556 IELVNEALKV 565 (1065)
Q Consensus 556 ~~~~~~al~~ 565 (1065)
+++.+.++..
T Consensus 470 ~~~~~~~~~~ 479 (508)
T KOG1840|consen 470 EELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHH
Confidence 8888887753
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.66 E-value=1e-13 Score=155.02 Aligned_cols=259 Identities=21% Similarity=0.205 Sum_probs=208.4
Q ss_pred cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh-
Q 001509 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI- 371 (1065)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 371 (1065)
....|....+...++..|...|+|+.|+..+..++..+. ..+........+|.+|...+++.+|+.+|++++.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 445677788888899999999999999999999998531 23344444556999999999999999999999986
Q ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001509 372 -------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 444 (1065)
Q Consensus 372 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A 444 (1065)
+|....++.+|+.+|...|++.+|..++++++.+...... .........+.+++.++...+++++|
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~-------~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG-------ASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc-------cChHHHHHHHHHHHHHHHHhcchhHH
Confidence 4455789999999999999999999999999987432100 00001135688999999999999999
Q ss_pred HHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHH
Q 001509 445 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524 (1065)
Q Consensus 445 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 524 (1065)
+.++++++.+.. .. .-..++..+.++.++|.+|..+|++.+|.++
T Consensus 345 ~~l~q~al~i~~--~~---------------------------------~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 345 KKLLQKALKIYL--DA---------------------------------PGEDNVNLAKIYANLAELYLKMGKYKEAEEL 389 (508)
T ss_pred HHHHHHHHHHHH--hh---------------------------------ccccchHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 999999987421 00 0013445788999999999999999999999
Q ss_pred HHHHHHHC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----C---CChHHHHHhhhhhccccchHHH
Q 001509 525 YRLILFKY--------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----G---KYPNALSMLGDLELKNDDWVKA 589 (1065)
Q Consensus 525 ~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~l~~~~~~~g~~~~A 589 (1065)
|++++... +.....+..+|..+.+.+++.+|...|..+..+. | +-...+.+|+.+|..+|+++.|
T Consensus 390 ~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 390 YKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred HHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 99999753 3335688899999999999999999999887763 3 4446788999999999999999
Q ss_pred HHHHHHhhh
Q 001509 590 KETFRAASD 598 (1065)
Q Consensus 590 ~~~~~~al~ 598 (1065)
+++...++.
T Consensus 470 ~~~~~~~~~ 478 (508)
T KOG1840|consen 470 EELEEKVLN 478 (508)
T ss_pred HHHHHHHHH
Confidence 999998875
No 85
>PLN02789 farnesyltranstransferase
Probab=99.65 E-value=8.7e-14 Score=149.60 Aligned_cols=202 Identities=14% Similarity=0.039 Sum_probs=178.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY--SDSLEFYKRA 188 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~--~~Al~~~~~a 188 (1065)
+|+..+.+++.++|.+..+|..+|.++...| .+++|+.++.+++..+|++..+|..++.++...|.. .+++.++.++
T Consensus 55 rAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ka 134 (320)
T PLN02789 55 RALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKI 134 (320)
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 8999999999999999999999999999999 689999999999999999999999999999988874 7889999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchH----hHHHHHHHHHHHHHhC
Q 001509 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA----GIRKGMEKMQRAFEIY 264 (1065)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~----~~~~A~~~~~~al~~~ 264 (1065)
+..+|.+ ..+|...|.++..+|++++|+.++.++++.+|.|..+|...+.+....+..+ ..+..+.+..+++..+
T Consensus 135 l~~dpkN-y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 135 LSLDAKN-YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred HHhCccc-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence 9999999 7889999999999999999999999999999999999999998887653211 1357888899999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Q 001509 265 PYCAMALNYLANHFFF----TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1065)
Q Consensus 265 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 317 (1065)
|++..+|+.++.++.. .+...+|...+..++.. .+..+.++..++.+|..
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHVFALSDLLDLLCE 267 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcHHHHHHHHHHHHh
Confidence 9999999999999987 34556788888776653 46667788888888775
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.65 E-value=2.4e-12 Score=146.31 Aligned_cols=328 Identities=15% Similarity=0.142 Sum_probs=204.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
.+.++....++...|++++|+..+......-++....+-.+|.++...|++++|...|...+..+|++ ...+.++..|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 45566677777777777777777777777667777777777777777777777777777777777777 55566666665
Q ss_pred HHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 208 YKLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME-KMQRAFEIYPYCAMALNYLANHFFFT 281 (1065)
Q Consensus 208 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1065)
.... ....-...|+......|....+... ..... .|+ .+...+. ++...+.. ..|.+...+-.+|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl-~L~~~-~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL-PLDFL-EGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHh-hcccC-CHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHHHcCh
Confidence 3332 3455566666666666654333211 11111 121 1333332 22333222 2333333333333211
Q ss_pred CCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-CchhhhhhHHHHHHHcCCHHH
Q 001509 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKLGDFRS 360 (1065)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 360 (1065)
... .+...+...|...-.......... .....+| ...++++.+|+.|...|++++
T Consensus 157 ~K~---------------------~~i~~l~~~~~~~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 157 EKA---------------------AIIESLVEEYVNSLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred hHH---------------------HHHHHHHHHHHHhhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 111 111111111111000000000000 0000112 235677889999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 001509 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGE 440 (1065)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~ 440 (1065)
|+.++++++...|..++.+...|.++...|++.+|...++.+..+++.+-. +-...+..+.+.|+
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy---------------iNsK~aKy~LRa~~ 277 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY---------------INSKCAKYLLRAGR 277 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH---------------HHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999988763 45566778889999
Q ss_pred HHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHH
Q 001509 441 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 520 (1065)
Q Consensus 441 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 520 (1065)
+++|...+........ +..... ..-...+.....|.+|.+.|++..
T Consensus 278 ~e~A~~~~~~Ftr~~~-----~~~~~L-----------------------------~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 278 IEEAEKTASLFTREDV-----DPLSNL-----------------------------NDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHhhcCCCC-----CcccCH-----------------------------HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999887765321 000000 011134455667999999999999
Q ss_pred HHHHHHHHHHHCCCh
Q 001509 521 ASVLYRLILFKYQDY 535 (1065)
Q Consensus 521 A~~~~~~al~~~p~~ 535 (1065)
|+..|..+.......
T Consensus 324 ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 324 ALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988765443
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=6.6e-13 Score=150.01 Aligned_cols=317 Identities=17% Similarity=0.120 Sum_probs=233.0
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHH
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1065)
+|+.+.++..+|.++...|+.+.|...+.++....|.+ ....+..+.+++..|++++|+..+++++..+|++ ..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD-LLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHH
Confidence 79999999999999999999999999999988887754 5567888999999999999999999999999999 4444
Q ss_pred HHHHHHHHHcCCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 201 LGIGLCRYKLGQLG----KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1065)
Q Consensus 201 ~~la~~~~~~g~~~----~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1065)
.. +..++.+|++. .+...+......+|....++..+|.++...|+ +.+|+..+++++.++|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 43 55555555544 44444444335667777888889999999999 999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhh---hHHHHH
Q 001509 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY---GLGQVQ 352 (1065)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~la~~~ 352 (1065)
+++..|++++|+.++.+++...+..+. ....+..++.++...|++++|+..|.+++...+. .......+ .+...+
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE-SDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC-CChHHHHhhHHHHHHHH
Confidence 999999999999999999987543222 2356778999999999999999999998642211 11111111 222333
Q ss_pred HHcCCHHHHHHH--H-HHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHcCCCCC
Q 001509 353 LKLGDFRSALTN--F-EKVLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DAQARTLLKKAGEEVP 424 (1065)
Q Consensus 353 ~~~g~~~~A~~~--~-~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~~ 424 (1065)
...|....+..+ + .......|. ........+.++...|+.+.|...+..+...... ...... .
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---------~ 306 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR---------D 306 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH---------h
Confidence 334433333222 1 111111121 2233346788888999999999999887664322 111111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDG 455 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (1065)
..+....+.+++..|+++.|+..+..++...
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2456778999999999999999999999753
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.62 E-value=7e-12 Score=142.55 Aligned_cols=310 Identities=15% Similarity=0.160 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----ChHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-----RYSDS 181 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-----~~~~A 181 (1065)
.|++++|+.++......-++....+-.+|.+++..|++++|...|...|..+|+|...+.++..+..... ....-
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 5889999999999888888888899999999999999999999999999999999999999998874443 56777
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Q 001509 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR-QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1065)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1065)
..+|.......|.+...-+ +...+..-..|.... .++...+.. .-|..+..+-.+|.....
T Consensus 97 ~~~y~~l~~~yp~s~~~~r--l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K-------------- 158 (517)
T PF12569_consen 97 LELYDELAEKYPRSDAPRR--LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEK-------------- 158 (517)
T ss_pred HHHHHHHHHhCccccchhH--hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhH--------------
Confidence 8999999999998833222 222222222343333 333333332 234444444444432221
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Q 001509 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1065)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1065)
..+...+..-|...-.......... .....+|. ...+++.++..|...|++++|+.++++++. ..|
T Consensus 159 -------~~~i~~l~~~~~~~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htP 225 (517)
T PF12569_consen 159 -------AAIIESLVEEYVNSLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTP 225 (517)
T ss_pred -------HHHHHHHHHHHHHhhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCC
Confidence 1111111111111000000000000 00001121 245678899999999999999999999998 568
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
..+..++..|.++-..|++.+|...++.+-.+++.+..+....+..+++.|+.++|...+....+.+.+...-..-++
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ-- 303 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ-- 303 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH--
Confidence 889999999999999999999999999999999999999999999999999999999998877654421110000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
..-.....|.+|.+.|++..|+..|.....
T Consensus 304 ----c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 ----CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred ----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 001234568899999999999999988776
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=9.9e-13 Score=148.60 Aligned_cols=309 Identities=15% Similarity=0.073 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1065)
Q Consensus 81 ~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 157 (1065)
+.+..+..++.+|...|... .|...+.++....|.+ ....+..|.++...|++++|...+++++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 4 DFALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667888998888888765 5566777766666644 456788899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001509 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1065)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al----~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1065)
+|.+..++.. +..++..|.+..+...+.+++ ..+|.. ...+..+|.++...|+++.|...+++++.++|++..+
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 9999987775 666666655554444444444 344544 4556678999999999999999999999999999999
Q ss_pred HHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHH-H
Q 001509 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-Y 308 (1065)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~ 308 (1065)
+..+|.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|+..++.++...+..+..... -
T Consensus 151 ~~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 151 VHAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 9999999999999 9999999999999887543 345689999999999999999999987543221111111 1
Q ss_pred H-HHHHHHHHcCCHHHHHHH--HH-HHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC---------c
Q 001509 309 Y-NLARSYHSKGDYEKAGLY--YM-ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------N 375 (1065)
Q Consensus 309 ~-~la~~~~~~g~~~~A~~~--~~-~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~ 375 (1065)
. .+...+...|....+..+ .. ......+. +.........+.++...|+...|...+..+...... .
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 1 223333444543333332 11 11111111 222233346788889999999999999887664322 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
..+....+.++...|+++.|+..+..++...
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567778999999999999999999998753
No 90
>PLN02789 farnesyltranstransferase
Probab=99.60 E-value=4.9e-13 Score=143.82 Aligned_cols=223 Identities=14% Similarity=0.008 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKR 187 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~ 187 (1065)
.|.+|..+|..++. ..+.+++|+..+.+++.++|.+..+|..++.++...| .+.+++.++.+
T Consensus 35 ~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~ 97 (320)
T PLN02789 35 EFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAED 97 (320)
T ss_pred HHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 45566666665544 3567889999999999999999999999999999998 68999999999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC
Q 001509 188 ALQVHPSCPGAIRLGIGLCRYKLGQL--GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1065)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1065)
++..+|++ ..+|...+.++..+|.. ..++.++.+++..+|.|..+|...+.++...|. +++++..+.++++.+|
T Consensus 98 ~i~~npkn-yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 98 VAEDNPKN-YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHCCcc-hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHCC
Confidence 99999999 67799999999999874 788999999999999999999999999999988 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 001509 266 YCAMALNYLANHFFFTGQ---HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1065)
Q Consensus 266 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1065)
.+..+|+..+.++...+. +. ...+.++.+..+++. ..|.+.
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~---------------------------------~~~e~el~y~~~aI~---~~P~N~ 217 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLE---------------------------------AMRDSELKYTIDAIL---ANPRNE 217 (320)
T ss_pred CchhHHHHHHHHHHhcccccccc---------------------------------ccHHHHHHHHHHHHH---hCCCCc
Confidence 999999998887665421 11 012234444444444 234444
Q ss_pred hhhhhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001509 343 FPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1065)
Q Consensus 343 ~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1065)
.+|+.++.++.. .+...+|+..+..++...|.++.++-.|+.+|..
T Consensus 218 SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 218 SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 445555555444 2344455555555555555555566666665554
No 91
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.59 E-value=1.2e-09 Score=129.58 Aligned_cols=249 Identities=13% Similarity=0.108 Sum_probs=162.2
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc----
Q 001509 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 196 (1065)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---- 196 (1065)
...+|.+..+|..++..+...|++++|+..+...+...|+...+++.+|.++++.+++.++..+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4567889999999999999999999999999999999999999999999999999998887766 6666655551
Q ss_pred --------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Q 001509 197 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1065)
Q Consensus 197 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1065)
..+++.+|.||-++|+.++|...|+++++.+|+++.++..+|..+... + +++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 145666777777777777777777777777777777777777666666 5 6777777766665
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 001509 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1065)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1065)
. |+..++|..+..++.+.+... |.+...+..+- +++..... ....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i~----------------~ki~~~~~-~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRIE----------------RKVLGHRE-FTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHHHHHH----------------HHHHhhhc-cchhH
Confidence 4 334445555555555554432 22222211111 11111000 01111
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHH
Q 001509 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL--------------------GQIEKAQELLRKA 402 (1065)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~a 402 (1065)
..+.-+=.+|...++|++++.++..+++.+|.|..+...++.+|... ..+..|+..|++.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~ 303 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKN 303 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence 22333345566667777777777777777777777777777776633 2345566666666
Q ss_pred HHhCCCc
Q 001509 403 AKIDPRD 409 (1065)
Q Consensus 403 l~~~p~~ 409 (1065)
+...+.+
T Consensus 304 i~f~~G~ 310 (906)
T PRK14720 304 IVFDTGN 310 (906)
T ss_pred eeecCCC
Confidence 6555443
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.54 E-value=1.1e-12 Score=138.17 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=132.2
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch--
Q 001509 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (1065)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-- 197 (1065)
.++..+..++.+|..++..|+++.|+..|++++..+|.++ .+++.+|.+++..|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778999999999999999999999999999999875 57899999999999999999999999999998743
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHH
Q 001509 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 198 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
.+++.+|.++... |+++.|+..|++++..+|++..++..+..+....+. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---~------------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---L------------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH---H-------------------
Confidence 2678888888876 667777777777777777765544333222111100 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHH
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1065)
......+|.+++..|++.+|+..|..++...+..|....+++.+|
T Consensus 166 -----------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 166 -----------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 011234455555555555555555555555544445555555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYP 373 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p 373 (1065)
.++...|++++|+.+++.+...+|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666666665555554443
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1.4e-11 Score=121.89 Aligned_cols=377 Identities=14% Similarity=0.115 Sum_probs=238.9
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 001509 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (1065)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (1065)
.+..+|.+|++++..-.. ..|.....+..+|.||+...+|..|..+|+++-...|......+..++.+++.+.+..|
T Consensus 21 I~d~ry~DaI~~l~s~~E---r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE---RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 445556666666555544 33444445555666666666666666666666666666666556666666666666666
Q ss_pred HHHHHHHHHh-----------------CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchh
Q 001509 396 QELLRKAAKI-----------------DPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 458 (1065)
Q Consensus 396 ~~~~~~al~~-----------------~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 458 (1065)
+.+...+... ..+.+.++.++........+.+.++.|++.++.|+++.|++-|+.+++.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv---- 173 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV---- 173 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh----
Confidence 5554433221 1111224444444444555678999999999999999999999999973
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHH----HCCC
Q 001509 459 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF----KYQD 534 (1065)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~ 534 (1065)
....+.+.++++.+..+.|++..|+++...+++ .+|.
T Consensus 174 ---------------------------------------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 174 ---------------------------------------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred ---------------------------------------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 334667889999999999999999998888775 3442
Q ss_pred h-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHhhhhhccccchH
Q 001509 535 Y-------------------------VDAYLRLAAIAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKNDDWV 587 (1065)
Q Consensus 535 ~-------------------------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~ 587 (1065)
. ..+++..+.++++.++++.|.+.+..+--... -+|..+.+++..- ..+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCcc
Confidence 1 33667777888899999888877665432221 2455666666552 335566
Q ss_pred HHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc------chHHHhHHHHH
Q 001509 588 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAANGAGVV 661 (1065)
Q Consensus 588 ~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~a~~~la~~ 661 (1065)
....-+.-.+...|- ...++.++--+ |++. ..|+-|..++ ..+|+ +.+.+..+-.+
T Consensus 294 ~g~~KLqFLL~~nPf-P~ETFANlLll-yCKN------------eyf~lAADvL----AEn~~lTyk~L~~Yly~LLdaL 355 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPF-PPETFANLLLL-YCKN------------EYFDLAADVL----AENAHLTYKFLTPYLYDLLDAL 355 (459)
T ss_pred ccHHHHHHHHhcCCC-ChHHHHHHHHH-Hhhh------------HHHhHHHHHH----hhCcchhHHHhhHHHHHHHHHH
Confidence 666666667776553 33444455555 7776 6666666554 44554 23333333333
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHH-HHHHHHc-----CCHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001509 662 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL-AHVYFAQ-----GNFALAMKMYQNCLRKFYYNTDAQILLYLAR 735 (1065)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l-g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~ 735 (1065)
....-..++|..-+........ .-+..+ +.+.... .-...|++.|..+++.+ ..++...++
T Consensus 356 It~qT~pEea~KKL~~La~~l~--------~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----LPVlMa~Ak 422 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLAGMLT--------EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-----LPVLMAQAK 422 (459)
T ss_pred HhCCCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 3344566666666555443221 111111 1222111 12345677777777764 357788899
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 001509 736 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 736 ~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
+|+...++..+.+.|++......++...+.|+|-+
T Consensus 423 iyW~~~Dy~~vEk~Fr~SvefC~ehd~WkLNvaHv 457 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSVEFCNDHDVWKLNVAHV 457 (459)
T ss_pred hhccccccHHHHHHHHHHHhhhcccceeeeccccc
Confidence 99999999999999999999998888888888754
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1e-11 Score=122.72 Aligned_cols=423 Identities=12% Similarity=0.092 Sum_probs=268.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
++.+|..|++++..-.+.+|.+...+..+|.+|+...+|..|..+|++.-...|......+..|..+++.+.+..|+.+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 35677899999999999999888899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1065)
..+... |.....+.-.-+.+.+..+++..+....++.- ..+........|.+.++.|+ ++.|++.|+.+++...
T Consensus 102 ~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhcC
Confidence 776543 33333444556667778888888877766521 12456778888888888888 9999999999999988
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001509 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVT-NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1065)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1065)
.+|.+-+.++.++++.|++..|+++...++... ...|........-|.--...|+. +..-.. ..+.+
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~S---------al~eA 243 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQS---------ALVEA 243 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHH---------HHHHH
Confidence 888888899999999999999988888777542 11121100000000000001111 011111 11234
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCC
Q 001509 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEE 422 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 422 (1065)
+...+.++++.|+++.|.+.+..+-... .-+|.++++++..-. .+++.....-+.-.+.++|-.+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~------------ 310 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPP------------ 310 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCCh------------
Confidence 5556777888888888876654432111 113566777665433 3456666666666677777433
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchh
Q 001509 423 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 502 (1065)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 502 (1065)
+++-|+-.+|++..-|+.|...+-+--... ..-..
T Consensus 311 ---ETFANlLllyCKNeyf~lAADvLAEn~~lT------------------------------------------yk~L~ 345 (459)
T KOG4340|consen 311 ---ETFANLLLLYCKNEYFDLAADVLAENAHLT------------------------------------------YKFLT 345 (459)
T ss_pred ---HHHHHHHHHHhhhHHHhHHHHHHhhCcchh------------------------------------------HHHhh
Confidence 677888888888877777776654321100 00011
Q ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCChHHHHHhhh
Q 001509 503 TVLFNLARLLE-QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPNALSMLGD 578 (1065)
Q Consensus 503 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~ 578 (1065)
..++++-..+. ..-..++|.+-+...-....+-......-...-...+ ....|++.|+..+++ ...+....++
T Consensus 346 ~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~Ak 422 (459)
T KOG4340|consen 346 PYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAK 422 (459)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 22333333322 2234455544443332211111000000011111111 122345555555554 3457778899
Q ss_pred hhccccchHHHHHHHHHhhhcCCCCChHH
Q 001509 579 LELKNDDWVKAKETFRAASDATDGKDSYA 607 (1065)
Q Consensus 579 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~ 607 (1065)
+|+...+|..+.+.|.........++.+-
T Consensus 423 iyW~~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred hhccccccHHHHHHHHHHHhhhcccceee
Confidence 99999999999999999988777766653
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.51 E-value=2.4e-12 Score=135.80 Aligned_cols=194 Identities=22% Similarity=0.324 Sum_probs=155.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 001509 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE--- 232 (1065)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 232 (1065)
++..+..++.+|..++..|+++.|+..|++++..+|.++ ..+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445688999999999999999999999999999999873 256899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHcc-----chHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHH
Q 001509 233 ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1065)
Q Consensus 233 a~~~la~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1065)
+++.+|.++.... +.+.+..|+..+.+++..+|.+..++..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a---------------------------------- 154 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA---------------------------------- 154 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH----------------------------------
Confidence 6888888887651 1123888888888888888877644321
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001509 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGH 384 (1065)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 384 (1065)
+..++..... . ....+.+|.+++..|++.+|+..|..++...|+. +.+++.+|.
T Consensus 155 ~~~~~~~~~~--------------~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~ 211 (235)
T TIGR03302 155 KKRMDYLRNR--------------L---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE 211 (235)
T ss_pred HHHHHHHHHH--------------H---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence 1112111110 0 0123568889999999999999999999997764 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 385 IYVQLGQIEKAQELLRKAAKIDPR 408 (1065)
Q Consensus 385 ~~~~~g~~~~A~~~~~~al~~~p~ 408 (1065)
++...|++++|..+++.+....|+
T Consensus 212 ~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 212 AYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999988776653
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=5.6e-13 Score=126.91 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=118.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1065)
-..+|++++.++|++ ++.+|.++...|++++|+..|..++..+|.+..++..+|.++...|++.+|+..|++++.++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356789999999874 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1065)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1065)
|++ +.+++.+|.|+..+|++++|+..|.+++...|+++..+..++.+....
T Consensus 89 p~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999 788999999999999999999999999999999999998888766543
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=3.4e-10 Score=117.95 Aligned_cols=296 Identities=19% Similarity=0.109 Sum_probs=214.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC
Q 001509 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1065)
.-|..-+..|+|.+|.....+.-+..+....+++.-|.+.-.+|+++.|-.++.++.+..++..-.+.+..+.+....|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 34566667788888888888877777777777777777888888888888888888877666655667777888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHH---H--HHHHHcCCHHHH
Q 001509 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL---A--NHFFFTGQHFLV 287 (1065)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a--~~~~~~g~~~~A 287 (1065)
+..|.....+++...|.++.++.....+|...|+ +......+.++-+..--+..-...+ + .++-..++-..+
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888888888888888888888888888877 7777666666655432222111111 1 011112222222
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHH
Q 001509 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1065)
Q Consensus 288 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1065)
..+....-..+..-..++.....++.-+..+|+.++|......+++..-+ +. ...-.-....+++..=++..++
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~-----L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PR-----LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hh-----HHHHHhhcCCCCchHHHHHHHH
Confidence 22222211222222344677788888899999999999999999974321 11 1112233567889999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 447 (1065)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 447 (1065)
.+..+|+++..+..||.++++.+.|.+|..+|+.+++..|+.. .+..+|.++...|+...|.+.
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~----------------~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS----------------DYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh----------------hHHHHHHHHHHcCChHHHHHH
Confidence 9999999999999999999999999999999999999988765 478889999999999999999
Q ss_pred HHHHHc
Q 001509 448 FKDALG 453 (1065)
Q Consensus 448 ~~~al~ 453 (1065)
+++++.
T Consensus 384 r~e~L~ 389 (400)
T COG3071 384 RREALL 389 (400)
T ss_pred HHHHHH
Confidence 999984
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=4.7e-10 Score=116.89 Aligned_cols=297 Identities=13% Similarity=0.054 Sum_probs=197.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHH
Q 001509 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427 (1065)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 427 (1065)
-|..-+..|+|..|.....+.-+..+...-.+..-+...-+.|+++.|-.++.++.+..+++.. .+
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l--------------~v 155 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL--------------AV 155 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH--------------HH
Confidence 3444455667777777776666555554455555556666667777777777776666544443 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHH
Q 001509 428 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 507 (1065)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 507 (1065)
....+.+....|++..|.....+++. ..|..+.++..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~-------------------------------------------~~pr~~~vlrL 192 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLE-------------------------------------------MTPRHPEVLRL 192 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHH-------------------------------------------hCcCChHHHHH
Confidence 44556666677777777777666665 44556666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCh---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhh
Q 001509 508 LARLLEQIHDTVAASVLYRLILFKYQDY---V-----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579 (1065)
Q Consensus 508 la~~~~~~g~~~~A~~~~~~al~~~p~~---~-----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 579 (1065)
..++|...|++.....++.++-+..--. . .++..+-.-....+..+.-..+++..-..-.+++.+...++.-
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 6677777777776666666655422211 1 1222221112222222223335555444445677888888888
Q ss_pred hccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHH
Q 001509 580 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 659 (1065)
Q Consensus 580 ~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 659 (1065)
+...|+.+.|.+....+++..-.+....+ ++ .... ++...=++..++.+..+|+++..+..||
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~~~--~~---~l~~------------~d~~~l~k~~e~~l~~h~~~p~L~~tLG 335 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLCRL--IP---RLRP------------GDPEPLIKAAEKWLKQHPEDPLLLSTLG 335 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHHHH--Hh---hcCC------------CCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence 88899999999999888875543231111 11 1111 6777778888889999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Q 001509 660 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 724 (1065)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 724 (1065)
.++.+.+.|.+|...|+.++...| +...+..+|+++-.+|+...|-..++.++..+..+
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 999999999999999999988875 56788899999999999999999999998765443
No 99
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.42 E-value=5.9e-12 Score=129.67 Aligned_cols=274 Identities=19% Similarity=0.192 Sum_probs=187.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCC
Q 001509 349 GQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424 (1065)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 424 (1065)
|.-+++.|++...+.+|+.+++....+ ..+|..||..|+-+++|++|+++-..=+.+. .++ ......
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla-------r~l--gdklGE 94 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA-------RLL--GDKLGE 94 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH-------HHh--cchhcc
Confidence 556778888888888888888876554 3466778888888888888887754332221 001 001111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHH
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 504 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 504 (1065)
+...-|+|..+-..|.|++|+.+..+-+....... .......+
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg-------------------------------------Drv~e~RA 137 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG-------------------------------------DRVLESRA 137 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHh-------------------------------------HHHhhhHH
Confidence 24567889999999999999999888776321110 11225678
Q ss_pred HHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHcCCHHHHHHH
Q 001509 505 LFNLARLLEQIHD--------------------TVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIEL 558 (1065)
Q Consensus 505 ~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~ 558 (1065)
+|++|.+|...|+ ++.|.++|..-++..... ..++-+||..|+-.|+|+.|+..
T Consensus 138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~ 217 (639)
T KOG1130|consen 138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHF 217 (639)
T ss_pred HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHH
Confidence 9999999987764 234555555555433322 34778889999999999999998
Q ss_pred HHHHHHHCCCC------hHHHHHhhhhhccccchHHHHHHHHHhhhcC-----CCCChHHHHhhHHHHHHHHHhhhhcCh
Q 001509 559 VNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDAT-----DGKDSYATLSLGNWNYFAALRNEKRAP 627 (1065)
Q Consensus 559 ~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~d~~~~~~lg~~~y~~~~~~~~~~~ 627 (1065)
-+.-+.+.... ..++.++|++|.-.|+++.|+++|+..+.+. ......+.++||+. |...
T Consensus 218 H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt-ytll-------- 288 (639)
T KOG1130|consen 218 HKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT-YTLL-------- 288 (639)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH-HHHH--------
Confidence 88777765332 3588899999999999999999999877632 22345577889999 8888
Q ss_pred hHHhhhHHHHHHHHHHHHhhCC------cchHHHhHHHHHHHhcCCcHHHHHHHHHHHHH
Q 001509 628 KLEATHLEKAKELYTRVIVQHT------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 681 (1065)
Q Consensus 628 ~~~~~~~~~A~~~~~~~l~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 681 (1065)
+.+++|+.++.+-|.+.. ....+.+.||..+...|..++|+.+.++.+++
T Consensus 289 ----~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 289 ----KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 899999999988766422 12334555555555555555555555555444
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.7e-08 Score=112.84 Aligned_cols=611 Identities=15% Similarity=0.102 Sum_probs=306.3
Q ss_pred HHHHHHHHhcCCChHHHHHHH--HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhh
Q 001509 27 SDILDILKAEQAPLDLWLIIA--REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQR 104 (1065)
Q Consensus 27 ~~~~~~L~~e~~~~~~~~~~a--~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~ 104 (1065)
.-+.+++-.+.++....-.+- ..|.-.|+.|.|.+-++-+-+. .+|..||.......+++..+
T Consensus 713 ~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--------------~vW~nmA~McVkT~RLDVAk- 777 (1416)
T KOG3617|consen 713 KPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--------------SVWDNMASMCVKTRRLDVAK- 777 (1416)
T ss_pred hhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--------------HHHHHHHHHhhhhccccHHH-
Confidence 456777777777766553222 2456689999988777664222 35666666665554444111
Q ss_pred hhHHHHHH--HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 001509 105 EKEEHFIL--ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182 (1065)
Q Consensus 105 ~k~~~~~~--A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al 182 (1065)
---|+... ....+.++.+ +|. ..-...+.+....|.+++|..+|.+.-+.+ .+-..|...|.+++|+
T Consensus 778 VClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~ 846 (1416)
T KOG3617|consen 778 VCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAF 846 (1416)
T ss_pred HhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHH
Confidence 01122222 2333445543 333 333455777888999999999999986644 4556788899999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Q 001509 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1065)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1065)
++.+.--++.- ...++..+.-+...++.+.|+++|+++-. |. .+.. .++ .+ +..+++.|-+
T Consensus 847 eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~--ha-fev~----rmL---~e---~p~~~e~Yv~--- 907 (1416)
T KOG3617|consen 847 EIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGV--HA-FEVF----RML---KE---YPKQIEQYVR--- 907 (1416)
T ss_pred HHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCC--hH-HHHH----HHH---Hh---ChHHHHHHHH---
Confidence 87765443333 34688889999999999999999987521 10 0000 000 00 1222222211
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 001509 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1065)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1065)
...++..|...|.++-..|+.+.|+.+|..+. -|+.+.++..-+|+.++|-.+-++.. ..
T Consensus 908 -~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~C~qGk~~kAa~iA~esg--------d~ 967 (1416)
T KOG3617|consen 908 -RKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIKCIQGKTDKAARIAEESG--------DK 967 (1416)
T ss_pred -hccchHHHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeEeeccCchHHHHHHHhcc--------cH
Confidence 11233455555555555555555555555442 23333444444444444433322211 11
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHhC------CC--------------cHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 001509 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PD--------------NCETLKALGHIYVQLG-QIEKAQELLRK 401 (1065)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~--------------~~~~~~~la~~~~~~g-~~~~A~~~~~~ 401 (1065)
.+.|.+|..|...|++.+|+.+|.++-... .. .+.-+...+..|...| ....|..+|.+
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 233344444444444444444443332210 00 0111122233333343 45555555443
Q ss_pred H------HH--hCCCcHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhh
Q 001509 402 A------AK--IDPRDAQARTLLKK-AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 472 (1065)
Q Consensus 402 a------l~--~~p~~~~a~~~l~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 472 (1065)
+ ++ .....+.+..++.+ ......|.++..-+.++....+|++|..++-.+...........+..-.
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~----- 1122 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVR----- 1122 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----
Confidence 3 11 12223334444443 3445567899999999999999999998765554321100000000000
Q ss_pred hhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCH
Q 001509 473 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 552 (1065)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 552 (1065)
-..++-+.+.......-.......++..+|.++.++|.|..|-+-|.++=. .+.....+++.|+.
T Consensus 1123 -------vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~AMraLLKSGdt 1187 (1416)
T KOG3617|consen 1123 -------VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLSAMRALLKSGDT 1187 (1416)
T ss_pred -------hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHHHHHHHHhcCCc
Confidence 001111111110001111223567888999999999999998888776521 11222334555554
Q ss_pred HHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhh---cChhH
Q 001509 553 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK---RAPKL 629 (1065)
Q Consensus 553 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~---~~~~~ 629 (1065)
++-+-+.+ -....++|. ++.-|++.-+|..--+.++.++..+.+ ..++-.||+. |-..+..+- .+...
T Consensus 1188 ~KI~FFAn-----~sRqkEiYI-mAANyLQtlDWq~~pq~mK~I~tFYTK--gqafd~LanF-Y~~cAqiEiee~q~ydK 1258 (1416)
T KOG3617|consen 1188 QKIRFFAN-----TSRQKEIYI-MAANYLQTLDWQDNPQTMKDIETFYTK--GQAFDHLANF-YKSCAQIEIEELQTYDK 1258 (1416)
T ss_pred ceEEEEee-----ccccceeee-ehhhhhhhcccccChHHHhhhHhhhhc--chhHHHHHHH-HHHHHHhhHHHHhhhhH
Confidence 43211100 011223333 333445555665555555555544433 2244456776 655543322 11222
Q ss_pred HhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHH
Q 001509 630 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 709 (1065)
Q Consensus 630 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 709 (1065)
..|-.++|..++.++-+.+ .+...+....+.. ....+.+..-.++. .+...
T Consensus 1259 a~gAl~eA~kCl~ka~~k~---------------------~~~t~l~~Lq~~~------a~vk~~l~~~q~~~--eD~~~ 1309 (1416)
T KOG3617|consen 1259 AMGALEEAAKCLLKAEQKN---------------------MSTTGLDALQEDL------AKVKVQLRKLQIMK--EDAAD 1309 (1416)
T ss_pred HhHHHHHHHHHHHHHHhhc---------------------chHHHHHHHHHHH------HHHHHHHHHHHHhh--hhHHH
Confidence 2344444444444443322 1111111111111 00111111112222 24555
Q ss_pred HHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCc
Q 001509 710 AMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 761 (1065)
Q Consensus 710 A~~~~~~al~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~ 761 (1065)
.+......+.. |.-++ ..++-.|...+....+|..|...+..+-...|+-.
T Consensus 1310 ~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1310 GIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred HHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 66666666654 22222 67788888899999999999999999988888643
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.39 E-value=6.7e-12 Score=119.51 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=116.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1065)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1065)
..+|+++++.+|++ ++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46789999999875 6678999999999999999999999999999 7889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1065)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1065)
|+++.+++.+|.++...|+ +++|+..|.+++.+.|+++..+..++.+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999998887776543
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=2.6e-09 Score=136.67 Aligned_cols=382 Identities=15% Similarity=0.079 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a 120 (1065)
......|..+...|.+.+|+..+..+... ..-..++...++.....|... .+..++..+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~-----------~l~~~l~~l 400 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELS-----------LLEECLNAL 400 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChH-----------HHHHHHHhC
Confidence 34456677788899999888887776322 122345556677777666544 444444433
Q ss_pred h-hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001509 121 S-RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---------NVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1065)
Q Consensus 121 ~-~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1065)
- .....++.....++.+++..|++++|...+..+....+. ...+...++.++...|++.+|...+++++.
T Consensus 401 p~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 480 (903)
T PRK04841 401 PWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA 480 (903)
T ss_pred CHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1 111234556677888999999999999999988764321 123455678888999999999999999998
Q ss_pred hCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccchHhHHHHHHHHHHH
Q 001509 191 VHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1065)
Q Consensus 191 ~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1065)
..|... ..+...+|.++...|+++.|...+.+++...... ..++..++.++...|+ +..|...+.++
T Consensus 481 ~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~---~~~A~~~~~~a 557 (903)
T PRK04841 481 ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF---LQAAYETQEKA 557 (903)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 655542 2345678899999999999999999998764321 2346678889999999 99999999988
Q ss_pred HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 261 FEIYPY--------CAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1065)
Q Consensus 261 l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1065)
+..... ...++..++.+++..|++++|...+..++..... .......+..++.++...|+++.|...+..
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 875221 2334567888999999999999999998875332 122355677789999999999999999999
Q ss_pred HHHhcCCCCCchhhhh----hHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 331 SVKEINKPHEFIFPYY----GLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKA 402 (1065)
Q Consensus 331 al~~~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 402 (1065)
+............... .....+...|+.+.|...+.......+... ..+..++.++...|++++|...+.++
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8764322211111111 122445568899999998877654322222 22567899999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 001509 403 AKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 455 (1065)
Q Consensus 403 l~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (1065)
+.......... ....++..+|.++...|+.++|...+.+++...
T Consensus 718 l~~~~~~g~~~---------~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 718 NENARSLRLMS---------DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHhCchH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 87632211100 012567788999999999999999999999853
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=2.1e-09 Score=137.62 Aligned_cols=389 Identities=14% Similarity=0.023 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhH
Q 001509 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1065)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1065)
..+...+..+...|++..+...+..+-. .+.........+..+...|++..+..++..+-... ...........
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d----~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~--~~~~~~l~~~~ 415 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGD----AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV--LLENPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCC----HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH--HhcCcchHHHH
Confidence 4455667778888998887765544311 12223445556777788888887777665432110 11222334567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 349 GQVQLKLGDFRSALTNFEKVLEIYPD---------NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
+.++...|++++|...+..+....+. ...+...++.++...|+++.|..++++++...+.......
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 490 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR----- 490 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH-----
Confidence 88888999999999999988764321 1345556788899999999999999999986554321111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
...+..+|.++...|+++.|...+.+++....... ...
T Consensus 491 -----~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-------------------------------------~~~ 528 (903)
T PRK04841 491 -----IVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-------------------------------------VYH 528 (903)
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-------------------------------------chH
Confidence 13567789999999999999999999986321000 111
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---
Q 001509 500 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--- 568 (1065)
Q Consensus 500 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 568 (1065)
....++.++|.++...|+++.|...+.+++.... .....+..++.++...|++++|...+.+++.....
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 1345678899999999999999999999887422 12334567888999999999999999999876432
Q ss_pred --ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCC-hHHH-Hh---hHHHHHHHHHhhhhcChhHHhhhHHHHHHHH
Q 001509 569 --YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD-SYAT-LS---LGNWNYFAALRNEKRAPKLEATHLEKAKELY 641 (1065)
Q Consensus 569 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d-~~~~-~~---lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 641 (1065)
....+..++.++...|++..|...+..+........ ...+ .. +....+... |..+.|...+
T Consensus 609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~A~~~l 676 (903)
T PRK04841 609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------------GDKEAAANWL 676 (903)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------------CCHHHHHHHH
Confidence 244566788999999999999999999876432211 1100 00 111102222 6777777776
Q ss_pred HHHHhhCCcchH----HHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 642 TRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQN 716 (1065)
Q Consensus 642 ~~~l~~~p~~~~----a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 716 (1065)
.......+.... .+..++.++...|++++|...+++++........ .....++..+|.++...|++++|...+.+
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 677 RQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665543222221 1346677777778888888888777765432211 12334666777777777888888888887
Q ss_pred HHHHhc
Q 001509 717 CLRKFY 722 (1065)
Q Consensus 717 al~~~~ 722 (1065)
++..+.
T Consensus 757 Al~la~ 762 (903)
T PRK04841 757 ALKLAN 762 (903)
T ss_pred HHHHhC
Confidence 777653
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=3.4e-11 Score=121.13 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEFY 185 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~~ 185 (1065)
...+++..+.+++..+|+++..|+.+|.++...|+++.|+..|.+++...|+++.++..+|.++ +..|+ +.+|..++
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3458899999999999999999999999999999999999999999999999999999999975 67777 59999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1065)
+++++.+|++ ..+++.+|.+++..|++++|+.+|+++++..|.+..
T Consensus 134 ~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 134 DKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999 778999999999999999999999999999887654
No 105
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.37 E-value=1e-11 Score=127.93 Aligned_cols=304 Identities=19% Similarity=0.194 Sum_probs=192.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1065)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1065)
-|.-+++.|++...+.+|+.+++...++.. .|.. ++..||+.|+..+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~---tLSA------------------------------IYsQLGNAyfyL~ 69 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLS---TLSA------------------------------IYSQLGNAYFYLK 69 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHH---HHHH------------------------------HHHHhcchhhhHh
Confidence 355566677777777777777766554332 1222 2333444555555
Q ss_pred CHHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCCCchhhhhhHHHHHHHcC
Q 001509 283 QHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE---INKPHEFIFPYYGLGQVQLKLG 356 (1065)
Q Consensus 283 ~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g 356 (1065)
+|.+|+++...-+.. ..+....+.+.-++|..+--.|.|++|+.+..+-+.. +++.-....++|++|.+|...|
T Consensus 70 DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 70 DYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 555555544332211 1112233445566777777777777777776665432 2222233456777777777665
Q ss_pred C--------------------HHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 357 D--------------------FRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 357 ~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 410 (1065)
+ +..|+++|..-+++... ...++-+||..|+-+|+|+.|+..-+.-+.+.....
T Consensus 150 k~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG 229 (639)
T KOG1130|consen 150 KCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG 229 (639)
T ss_pred cccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh
Confidence 3 34555666555554322 134677888899999999999998887776543332
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhccc
Q 001509 411 QARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 490 (1065)
Q Consensus 411 ~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (1065)
+-... -..+.|+|.+|+-.|+++.|+++|+..+.+.....
T Consensus 230 DrAae---------RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg------------------------------- 269 (639)
T KOG1130|consen 230 DRAAE---------RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG------------------------------- 269 (639)
T ss_pred hHHHH---------HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-------------------------------
Confidence 21000 15788999999999999999999999886432111
Q ss_pred CCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 491 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEALK 564 (1065)
Q Consensus 491 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 564 (1065)
.....+...|.+|..|.-...+.+|+.++.+-+.+.. ....++..||..+...|....|+.+....++
T Consensus 270 ------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 270 ------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred ------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2233677889999999999999999999988776433 2356888899999999999999888887766
Q ss_pred HC-----CC-ChHHHHHhhhhhccccc
Q 001509 565 VN-----GK-YPNALSMLGDLELKNDD 585 (1065)
Q Consensus 565 ~~-----p~-~~~~~~~l~~~~~~~g~ 585 (1065)
+. +. ...+..++..+....|.
T Consensus 344 ~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 344 SSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 53 11 22344555555444443
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.34 E-value=4.8e-11 Score=141.28 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=177.8
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHh
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 576 (1065)
.+|.+..++..++..+...+++++|+.++...+..+|+....|+.+|.++...+++..+..+ .++.+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--------- 94 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--------- 94 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---------
Confidence 78889999999999999999999999999999999999999999999999999987666555 4444433
Q ss_pred hhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHh
Q 001509 577 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 656 (1065)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 656 (1065)
...+| .+.+++...+...+. ..+++..+|.+ |-.. |..++|...|+++|+.+|+|+.+++
T Consensus 95 -----~~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 95 -----QNLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred -----cccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 33344 334444433333333 55689999999 9999 9999999999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc----------
Q 001509 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---------- 726 (1065)
Q Consensus 657 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 726 (1065)
++|..|... ++++|+.++.+++... ...++|..+..++.+.+...+..-+
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998764 3344555555555555544222222
Q ss_pred --------HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhh
Q 001509 727 --------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 772 (1065)
Q Consensus 727 --------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~ 772 (1065)
..++.-+=..|...++|++++.+|+.++..+|+|..+++.++.|+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344444477788899999999999999999999999999999865
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=3.9e-10 Score=110.03 Aligned_cols=211 Identities=16% Similarity=0.065 Sum_probs=172.9
Q ss_pred HcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhH
Q 001509 52 KQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTW 131 (1065)
Q Consensus 52 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~ 131 (1065)
...+.++-+++...++......-+ .++.-.++-.+..+.+-.|+.. .|..++++.....|++....
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~---g~e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV~ 89 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGAL---GDEIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRVG 89 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhccc---CchHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhHH
Confidence 344566666666555322110000 1122334444444444445444 89999999888889999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC
Q 001509 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1065)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1065)
...|..+-..|++++|+++|+..+..+|.|..++-..-.+...+|+-.+|++.+...+...+.+ ..+|..++.+|...|
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999888889999999999999999999999999 788999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1065)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (1065)
+|++|.-+++.++-+.|.++-.+..+|.+++..|-..++.-+..+|.++++++|.+..+++.+..+
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 999999999999999999999999999999998888889999999999999999888777665433
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.2e-07 Score=104.23 Aligned_cols=346 Identities=17% Similarity=0.180 Sum_probs=201.5
Q ss_pred HHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Q 001509 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1065)
Q Consensus 238 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 317 (1065)
+.+....|- +++|..+|.+.-.. -.|-.+|...|.+++|.++.+.--. -..-..|++.+..+..
T Consensus 807 AvLAieLgM---lEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DR-----iHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 807 AVLAIELGM---LEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDR-----IHLRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccc-----eehhhhHHHHHHHHHh
Confidence 344444555 77788777776543 2455667778888888777664321 1334678888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001509 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1065)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1065)
.++.+.|+.+|+++-. +. + .+...+.++..+++.|-+-. .+...|...|..+...|+.+.|+.
T Consensus 871 r~Di~~AleyyEK~~~-----ha-----f---ev~rmL~e~p~~~e~Yv~~~----~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV-----HA-----F---EVFRMLKEYPKQIEQYVRRK----RDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hccHHHHHHHHHhcCC-----hH-----H---HHHHHHHhChHHHHHHHHhc----cchHHHHHHHHHHhcccchHHHHH
Confidence 8999999999987642 11 1 11222334455555543322 245777778888888899999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHH
Q 001509 398 LLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 477 (1065)
Q Consensus 398 ~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1065)
+|..+-. |+.+..+.+-+|+.++|-.+-++.
T Consensus 934 ~Y~~A~D-----------------------~fs~VrI~C~qGk~~kAa~iA~es-------------------------- 964 (1416)
T KOG3617|consen 934 FYSSAKD-----------------------YFSMVRIKCIQGKTDKAARIAEES-------------------------- 964 (1416)
T ss_pred HHHHhhh-----------------------hhhheeeEeeccCchHHHHHHHhc--------------------------
Confidence 8887643 556667777788888887766543
Q ss_pred HhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH------CCChHHHHHHHHHHHHHcC-
Q 001509 478 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARN- 550 (1065)
Q Consensus 478 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g- 550 (1065)
.+..+.|.+|+.|...|++.+|+.+|.++-.. ...+ +..-.|+.+....|
T Consensus 965 ----------------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 965 ----------------------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLALMSGG 1021 (1416)
T ss_pred ----------------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhhcCc
Confidence 25567888999999999999999888876432 1111 01112222222222
Q ss_pred -CHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHh----------hhcCCCCChHHHHhhHHHHHHHH
Q 001509 551 -NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA----------SDATDGKDSYATLSLGNWNYFAA 619 (1065)
Q Consensus 551 -~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------l~~~~~~d~~~~~~lg~~~y~~~ 619 (1065)
+.-.|..+|+..-- -...-..+|.+.|.+.+|++..-.. -.+.+..|+..+..-++. |...
T Consensus 1022 ~d~v~aArYyEe~g~-------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF-F~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGG-------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF-FENN 1093 (1416)
T ss_pred hhHHHHHHHHHHcch-------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH-HHhH
Confidence 33334444443210 0111223444555555555433211 114455677777777777 7777
Q ss_pred HhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcC--CCC--CcchHHHH
Q 001509 620 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG--SVF--VQMPDVWI 695 (1065)
Q Consensus 620 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~--~~~~~~~~ 695 (1065)
.+|++|..++-.+-.. .-+.-++...+..-..++.+.+ .|. +.+ .....++.
T Consensus 1094 ------------~qyekAV~lL~~ar~~---------~~AlqlC~~~nv~vtee~aE~m---Tp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1094 ------------QQYEKAVNLLCLAREF---------SGALQLCKNRNVRVTEEFAELM---TPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred ------------HHHHHHHHHHHHHHHH---------HHHHHHHhcCCCchhHHHHHhc---CcCcCCCccHHHHHHHHH
Confidence 7888888776444221 1111122222222222222111 121 100 12345788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 696 NLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 696 ~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
.+|.++..+|.|..|-+-|.+|-.+
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhhhhhH
Confidence 9999999999999999988887543
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=1e-10 Score=130.06 Aligned_cols=216 Identities=17% Similarity=0.191 Sum_probs=176.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001509 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1065)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~ 123 (1065)
..+|..+...|-...|+.++++. .++.....+|..+|... +|..+..+-++
T Consensus 402 ~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~-----------kaeei~~q~le- 452 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHG-----------KAEEINRQELE- 452 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccc-----------hHHHHHHHHhc-
Confidence 77888999999999999998864 35666788888888655 67777777777
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1065)
.|+++..|..+|.+.....-|++|.++++.. +..|...+|...+..++|.++...++..+.++|-. ...|+.+
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf~~ 525 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWFGL 525 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHHhc
Confidence 6668888888888877777777777777665 34467777777788899999999999999999988 6779999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001509 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1065)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1065)
|.|.++++++..|..+|.+++.++|++..+|.+++..|...+. -.+|...+.++++.+-.+..+|.+...+....|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc
Confidence 9999999999999999999999999999999999999998888 8888888999988887777777777777777777
Q ss_pred HHHHHHHHHHHHhcc
Q 001509 284 HFLVEQLTETALAVT 298 (1065)
Q Consensus 284 ~~~A~~~~~~al~~~ 298 (1065)
++.|+..+.+.+...
T Consensus 603 ~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777776554
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.31 E-value=3e-10 Score=112.44 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=160.5
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
.+...+-+....+|.+..+ +.++..+...|+-+.+.....++...+|.+...+..+|...+..|+|..|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3566666677788999988 889999999999999999999988889999888888999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHH
Q 001509 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1065)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1065)
.|++ +.+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..++-.|+ ++.|..++..+....+.+..+.
T Consensus 130 ~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 130 APTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHH
Confidence 9999 78899999999999999999999999999999999999999999999999 9999999999998888899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 272 NYLANHFFFTGQHFLVEQLTETAL 295 (1065)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al 295 (1065)
..|+.+....|++..|..+...-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 999999999999998887766543
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.31 E-value=5.1e-07 Score=103.50 Aligned_cols=229 Identities=14% Similarity=0.124 Sum_probs=118.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001509 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (1065)
..+++.+|+..+.++++..|+...+....|.++++.|++++|..+++..-...+++ ...+-.+-.||..+|++++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHHHHHHHHHHHHhhhhHHHHH
Confidence 44566666666666666666666666666666666666666665555444444444 44455566666666666666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH---------HHHH
Q 001509 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF-TGQHF---------LVEQ 289 (1065)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~---------~A~~ 289 (1065)
|++++..+|+ ...+..+-..|.+.+. |.+-.+.--+..+..|+++..+.....+++. ....+ -|..
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 6666666665 5555555555555554 4433333333344555555433333333222 11111 1333
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHH
Q 001509 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1065)
Q Consensus 290 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1065)
.++..+..........+ ....-.++..+|++++|..++..-+... ..+............+...+++.+-.++..+++
T Consensus 176 m~~~~l~~~gk~~s~aE-~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAE-IILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHhccCCccchHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444433211111111 2222344556677777777774333211 112222222344566666777777777777777
Q ss_pred HhCCCc
Q 001509 370 EIYPDN 375 (1065)
Q Consensus 370 ~~~p~~ 375 (1065)
...+++
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 777665
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.31 E-value=3e-10 Score=114.31 Aligned_cols=125 Identities=21% Similarity=0.264 Sum_probs=115.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH-HHcCC--HHHHH
Q 001509 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR-YKLGQ--LGKAR 217 (1065)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~-~~~g~--~~~A~ 217 (1065)
.++.++++..+++++..+|+++.+|+.+|.++...|++++|+..|.+++.+.|++ ..++..+|.++ ...|+ +++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-AELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCCcHHHH
Confidence 6778999999999999999999999999999999999999999999999999999 78899999975 67787 59999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHH
Q 001509 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
..++++++.+|+++.++..+|..+...|+ +++|+..++++++..|.+..
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999 99999999999999887553
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=1.3e-09 Score=121.47 Aligned_cols=224 Identities=17% Similarity=0.093 Sum_probs=196.8
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001509 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1065)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1065)
-|........++..+...|-...|+..|++.-. +-....||...|+..+|..+..+-++ .|.++..|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHH
Confidence 355667788899999999999999999988753 66788999999999999999999998 666788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhh
Q 001509 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 460 (1065)
Q Consensus 381 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 460 (1065)
.+|.+.....-|++|.++.+.... .+...+|......++|.++...|+..+.
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sa---------------------rA~r~~~~~~~~~~~fs~~~~hle~sl~------- 513 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISA---------------------RAQRSLALLILSNKDFSEADKHLERSLE------- 513 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhH---------------------HHHHhhccccccchhHHHHHHHHHHHhh-------
Confidence 999888777667777666654332 2234456667778999999999999998
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHH
Q 001509 461 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 540 (1065)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 540 (1065)
.+|....+||.+|.+..+.+++..|...|...+...|++..+|+
T Consensus 514 ------------------------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn 557 (777)
T KOG1128|consen 514 ------------------------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN 557 (777)
T ss_pred ------------------------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh
Confidence 56778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcC
Q 001509 541 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 600 (1065)
Q Consensus 541 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 600 (1065)
+++..|...++..+|...++++++.+-.+..+|-+...+....|.++.|++.|.+.+...
T Consensus 558 Nls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 558 NLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998754
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.29 E-value=7.3e-11 Score=112.27 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=109.3
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
..|.+++..+|.+....+.+|..++..|++++|+..|+.++..+|.++.++..+|.+++..|++.+|+.+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
+ ..+++.+|.|+...|+++.|+..|+++++++|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 77789999999999999999999999999999876643
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.24 E-value=7.1e-10 Score=131.22 Aligned_cols=153 Identities=13% Similarity=-0.010 Sum_probs=131.0
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001509 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1065)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1065)
+.-+.......|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++...|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 33334445567888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHH
Q 001509 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1065)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1065)
++ ...++.+|.++..+|++++|+.+|++++..+|++..+++.+|.++...|+ .++|...|++++.....-...
T Consensus 152 ~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 152 SS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred CC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHH
Confidence 98 77788899999999999999999999998888889999999999999888 889999999988876554433
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.23 E-value=1.5e-09 Score=107.60 Aligned_cols=179 Identities=20% Similarity=0.210 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1065)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1065)
..+...+-.....+|.+..+ ..++..++..|+-+.++.+..+++..+|.+ ..+...+|...+..|++..|+..|.++.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 33666677777889999999 999999999999999999999999999998 6677779999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 001509 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (1065)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 304 (1065)
.+.|++..+|..+|.+|.+.|+ ++.|...|.+++++.|+.+.+.++++..++..|++..|..++..+.... +.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999988763 446
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 305 SHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1065)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1065)
..+..+++.+....|++..|.....+-
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 688899999999999999987765443
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=4.4e-10 Score=106.88 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=110.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
..|++++..+|++..+.+.+|.+++..|++.+|+..|++++..+|.+ ..+++.+|.++..+|++++|+.+|.+++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46888999999999999999999999999999999999999999998 77899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHH
Q 001509 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1065)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1065)
.++..++.+|.++...|+ +++|+..++++++.+|++....
T Consensus 83 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGE---PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999 9999999999999999887643
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1e-08 Score=100.34 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=145.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1065)
..+-....+.+..|+.+-|..++++.....|.+..+....|..+-..|+|++|+++|...+.-+|.+ ..++...-.+..
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~-~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD-TVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch-hHHHHHHHHHHH
Confidence 3444566777888999999999999988889999999999999999999999999999999999999 667778788888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---
Q 001509 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF--- 285 (1065)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--- 285 (1065)
.+|..-.|+..+...++..+.+.++|..++.+|+..|+ +.+|.-+++.++-+.|.++..+..++.+++..|..+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~---f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD---FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999999999999999999998 999999999999999999999999998888877533
Q ss_pred HHHHHHHHHHhcc
Q 001509 286 LVEQLTETALAVT 298 (1065)
Q Consensus 286 ~A~~~~~~al~~~ 298 (1065)
.+.++|.++++..
T Consensus 209 ~arkyy~~alkl~ 221 (289)
T KOG3060|consen 209 LARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHhC
Confidence 3566666666553
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=2.1e-09 Score=127.28 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a 120 (1065)
+..-++-.+.-+.|.+..+...|-+++. |....+....++..||.+....|..+ +|..++..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~ 112 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLD------YVRRYPHTELFQVLVARALEAAHRSD-----------EGLAVWRGI 112 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHH------HHHhccccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHH
Confidence 4455555666667777666666655432 23334456788999999999999877 999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHH
Q 001509 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1065)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1065)
+.+.|++..+++.++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|+|++|+.+|++++..+|+. +.++
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~ 191 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGY 191 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988988 7889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1065)
+.+|.++...|+.++|...|++++.....-...
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999999987655544
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.15 E-value=6.5e-10 Score=102.95 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=100.9
Q ss_pred HhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchH
Q 001509 120 ASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1065)
Q Consensus 120 a~~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1065)
+..+. ++.-...+.+|..++..|++++|...|+.+...+|.++..|+++|.++-.+|+|.+|+..|.+++.++|++ +.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch
Confidence 34556 66778899999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1065)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1065)
+++..|.|++..|+.+.|+..|+.++...-.
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999988643
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=5.5e-10 Score=112.58 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
.+-.-|.-++..++|.+|+..|.++|.++|.|+..|..+|.+|.++|.|..|++.++.++.++|.. ..+|..+|.+|+.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~ 161 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHc
Confidence 344567777788888888888888888888888888888888888888888888888888888887 6678888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 001509 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1065)
+|++.+|+..|+++|.++|++...+..|.......+.
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 8888888888888888888887766666555555444
No 122
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.12 E-value=1.9e-08 Score=104.55 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=72.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHH
Q 001509 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIR 200 (1065)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~ 200 (1065)
.++..++..|..++..|+|++|+..|+.++...|..+.+ .+.+|.++++.++|..|+..|++.++.+|+++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356778889999999999999999999999999988654 48999999999999999999999999999883 4567
Q ss_pred HHHHHHHHHcC
Q 001509 201 LGIGLCRYKLG 211 (1065)
Q Consensus 201 ~~la~~~~~~g 211 (1065)
+.+|.|+..++
T Consensus 110 Y~~g~~~~~~~ 120 (243)
T PRK10866 110 YMRGLTNMALD 120 (243)
T ss_pred HHHHHhhhhcc
Confidence 77887765543
No 123
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=3.1e-09 Score=113.20 Aligned_cols=255 Identities=17% Similarity=0.095 Sum_probs=139.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1065)
.-+|..|+|..++..+. +.. ...+........+.+++..+|++...+.-+.. ..+....+...++..+...
T Consensus 9 rn~fy~G~Y~~~i~e~~--~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~------~~~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS--LKS-FSPENKLERDFYQYRSYIALGQYDSVLSEIKK------SSSPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHCTT-HHHHCHHHH--CHT-STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T------TSSCCCHHHHHHHHHHCTS
T ss_pred HHHHHhhhHHHHHHHhh--ccC-CCchhHHHHHHHHHHHHHHcCChhHHHHHhcc------CCChhHHHHHHHHHHHhCc
Confidence 34556677777665555 111 11223445566677777777776654432211 1122233344444444433
Q ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 356 GDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 356 g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
++-+.++..+...+... +.++.+....|.++...|++++|+.++.+. .+. +.......
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~l---------------E~~al~Vq 139 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSL---------------ELLALAVQ 139 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCH---------------HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Ccc---------------cHHHHHHH
Confidence 45555555554443222 123445555666677777777777666543 122 34444566
Q ss_pred HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 513 (1065)
++...++++.|...++.+.. .+.+...+....+.+..
T Consensus 140 i~L~~~R~dlA~k~l~~~~~-------------------------------------------~~eD~~l~qLa~awv~l 176 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQ-------------------------------------------IDEDSILTQLAEAWVNL 176 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHC-------------------------------------------CSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh-------------------------------------------cCCcHHHHHHHHHHHHH
Confidence 67777777777777776654 22222222222333333
Q ss_pred HcC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccch-HHHH
Q 001509 514 QIH--DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW-VKAK 590 (1065)
Q Consensus 514 ~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~ 590 (1065)
..| .+.+|..+|+.+....+..+..++.++.+++.+|++++|...+.+++..+|++++++.+++.+....|+. +.+.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 334 5777777777776666666777777777777777777777777777777777777777777777777776 4455
Q ss_pred HHHHHhhhcCCC
Q 001509 591 ETFRAASDATDG 602 (1065)
Q Consensus 591 ~~~~~al~~~~~ 602 (1065)
+++.++....|.
T Consensus 257 ~~l~qL~~~~p~ 268 (290)
T PF04733_consen 257 RYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHCHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 555555545444
No 124
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=9.2e-08 Score=101.53 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=122.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHcCCCCC
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA-AKIDPRDAQARTLLKKAGEEVP 424 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~l~~~~~~~~ 424 (1065)
......++.+.+...+..-...++.+..+.+.++...+..++..|++.+|.+.+... +...|.... .+....
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~-------T~q~~~ 282 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTI-------TPQLSS 282 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccc-------cchhhh
Confidence 334455677778888888888888887788999999999999999999999887643 111221000 001112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-ccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
...|+|+|+++++.|.|.-+..+|.+++. .|..... + +.......-.......
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g------------------------~~~~~~~tls~nks~e 336 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN--G------------------------LKPAKTFTLSQNKSME 336 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc--c------------------------CCCCcceehhcccchh
Confidence 34679999999999999999999999995 2211100 0 0000000012334678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 548 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 548 (1065)
++|+.|..|...|++-.|.++|.+++.....++..|++++.+++.
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998763
No 125
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=4.3e-09 Score=112.11 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001509 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1065)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1065)
....|.++...|++++|+..+... ....+.....++++..++++.|.+.++.+.+.+.+..-+....+.+.+
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l 176 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 333444455555555554443221 222333334455555555555555555555444443333333333333
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 388 QLG--QIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 388 ~~g--~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
..| .+.+|.-+|+.+....+..+ .+++.++.+++.+|+|++|...+.+++.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~---------------~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTP---------------KLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SH---------------HHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HhCchhHHHHHHHHHHHHhccCCCH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333 34555555555444333332 2344455555555555555555555443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=8.5e-09 Score=110.69 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
|....++++.|..++..|.++.|+..++..+...|++ +..+-..+.++...|+..+|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 7888899999999999999999999999999999999 677888999999999999999999999999999988899999
Q ss_pred HHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001509 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1065)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1065)
..++..|+ +.+|+..++..+..+|+++..|..|+..|...|+-.++ ....+..|...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a--------------------~~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA--------------------LLARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH--------------------HHHHHHHHHhC
Confidence 99999999 88999999999999999999999999999999987554 44556778888
Q ss_pred CCHHHHHHHHHHHHHhc
Q 001509 319 GDYEKAGLYYMASVKEI 335 (1065)
Q Consensus 319 g~~~~A~~~~~~al~~~ 335 (1065)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998865
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=1.2e-08 Score=103.72 Aligned_cols=189 Identities=20% Similarity=0.256 Sum_probs=116.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHH
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1065)
.+..++..|..++..|+|.+|+..|+.++...|.+ ..+.+.+|.+++..|+|..|+..|++.+...|+++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45678888888888888888888888888887765 57788888888888888888888888888888873 34667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1065)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1065)
.+|.+++.+..-. + ....+.....+|+..|+..+...|+++.+-..
T Consensus 84 ~~g~~~~~~~~~~---------~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A-------- 129 (203)
T PF13525_consen 84 MLGLSYYKQIPGI---------L-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA-------- 129 (203)
T ss_dssp HHHHHHHHHHHHH---------H------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHH--------
T ss_pred HHHHHHHHhCccc---------h-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHH--------
Confidence 7777766541110 0 00111122566667777777777765533211
Q ss_pred CCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHH
Q 001509 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1065)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1065)
...+..+.. ....--+.+|..|++.|.|..|+..|+.+++.++..+....++..++.+|..+|....|
T Consensus 130 ------~~~l~~l~~------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 130 ------KKRLAELRN------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp ------HHHHHHHHH------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ------HHHHHHHHH------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 111111100 11233455677777777777777777777777766666666777777777777777644
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.06 E-value=1.6e-05 Score=86.32 Aligned_cols=400 Identities=11% Similarity=0.051 Sum_probs=236.1
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 001509 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1065)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1065)
++-++.+|.+..+|+.+..-+-.+ -+++....|++.+...|..+.+|.......+..++|+.-..+|.++|..--+- .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 566889999999999999888777 99999999999999999999999999999999999999999999999765443 2
Q ss_pred HHHHHHHHHHHHcCCHHHHH----HHHHHHHH---hCCCCHHHHHHHHHHHHHccc------hHhHHHHHHHHHHHHHhC
Q 001509 198 AIRLGIGLCRYKLGQLGKAR----QAFQRALQ---LDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRAFEIY 264 (1065)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~----~~~~~al~---~~p~~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~al~~~ 264 (1065)
-+-..+-.+....|....+. ..|+-++. .++.....|...+..+..-.- ...++.....|++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 23334444445555544433 33333333 355666666666655543211 112455556667766543
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CC-
Q 001509 265 PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KP- 338 (1065)
Q Consensus 265 p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~- 338 (1065)
-.+.+ .|. +|..-..-.+.++ ..-.+......|..|...+++...... ..
T Consensus 168 m~nlEkLW~----------DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 168 MHNLEKLWK----------DYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred cccHHHHHH----------HHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 22221 111 1111111111111 001111223344455555544433211 00
Q ss_pred ---CCc-------hhhhhhHHHHHHHc------CC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---------
Q 001509 339 ---HEF-------IFPYYGLGQVQLKL------GD--FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--------- 391 (1065)
Q Consensus 339 ---~~~-------~~~~~~la~~~~~~------g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------- 391 (1065)
|.. +..|.++...-... |. -..-.-.|++++..-+-++++|+..+..+...++
T Consensus 224 ~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~ 303 (656)
T KOG1914|consen 224 AVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVP 303 (656)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccc
Confidence 110 11122221111100 11 1122335667777667778888776666665555
Q ss_pred -----HHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcccchhhhccc
Q 001509 392 -----IEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG---EFESAHQSFKDALGDGIWLTLLDS 463 (1065)
Q Consensus 392 -----~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 463 (1065)
.+++..+|++++...-.... .+++.++..--..- .++..-..+.+++..
T Consensus 304 ~a~~~t~e~~~~yEr~I~~l~~~~~--------------~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~--------- 360 (656)
T KOG1914|consen 304 DAKSLTDEAASIYERAIEGLLKENK--------------LLYFALADYEESRYDDNKEKKVHEIYNKLLKI--------- 360 (656)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhHHHhcccchhhhhHHHHHHHHhh---------
Confidence 56777777777653211110 12222222211111 234444455554432
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 001509 464 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 543 (1065)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 543 (1065)
...+..-++.++-..-.+..-...|..+|.++-+..-....++..-|
T Consensus 361 ---------------------------------~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 361 ---------------------------------EDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred ---------------------------------hccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 11112234555555566666778888999988764433334444444
Q ss_pred HH-HHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhc
Q 001509 544 AI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 599 (1065)
Q Consensus 544 ~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 599 (1065)
.+ |...++...|.+.|+-.+...++.+..-......+...++-..|...|++++..
T Consensus 408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 44 456889999999999999999999999999999999999999999999999876
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=2.3e-08 Score=107.45 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=125.9
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001509 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1065)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 272 (1065)
|.. ...+++.+..++..|.++.|...+...+...|+|+..+...+.++...++ ..+|.+.+++++.++|+.+.++.
T Consensus 303 ~~~-~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGG-LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccc-hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHH
Confidence 555 56788888888888888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHH
Q 001509 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1065)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1065)
.+|..++..|++.+|+..++..+.. .|.++..|..++.+|..+|+..+|... .+..|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~A--------------------~AE~~ 435 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALLA--------------------RAEGY 435 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHHH--------------------HHHHH
Confidence 8888888888888888888887765 466778888888888888887776443 34556
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 001509 353 LKLGDFRSALTNFEKVLEIY 372 (1065)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~ 372 (1065)
...|+++.|+..+..+.+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 67788888888888887765
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=4e-08 Score=102.16 Aligned_cols=187 Identities=12% Similarity=0.121 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 001509 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EAL 234 (1065)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 234 (1065)
..+..++..|..++..|+|++|+..|++++...|..+ ..+.+.+|.++++.++++.|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3577889999999999999999999999999999883 22358899999999999999999999999999875 557
Q ss_pred HHHHHHHHHcc---------------chHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 001509 235 VALAVMDLQAN---------------EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1065)
Q Consensus 235 ~~la~~~~~~~---------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 299 (1065)
+.+|.++...+ +......|+..|+..+...|+...+-... ..+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~--------------~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT--------------KRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH--------------HHHHHHHH---
Confidence 78887654433 22335678888899999888875332111 10000000
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHH
Q 001509 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1065)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1065)
..+.--+.+|..|.+.|.|..|+.-++.++..++..+....+++.++..|...|..++|..+..
T Consensus 173 ---~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 173 ---RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred ---HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 0112223455555555666556655555555555555555555555555555555555554443
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.04 E-value=5e-05 Score=87.68 Aligned_cols=295 Identities=12% Similarity=0.013 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
.++|.+|+....+.++..|+.+.+....|..+++.|+.++|..+++..-...+++...+-.+-.+|...+++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 35688999999999999999999999999999999999999988888877788888899999999999999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cch------HhHHHHHHHHHH
Q 001509 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEA------AGIRKGMEKMQR 259 (1065)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~------~~~~~A~~~~~~ 259 (1065)
+++..+|+ ....+.+=.+|.+-++|.+-.++--+..+..|.++..+.....+.+.. ... --..-|...+++
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99999999 356778888899999888777777777778888876644444443332 110 012234455566
Q ss_pred HHHhC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001509 260 AFEIY-PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1065)
Q Consensus 260 al~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1065)
.++.. +-... -....-.++...|.+++|..++..-+.... .+.....-......+...+++.+-.++..+++...+
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l-~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~- 257 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL-TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN- 257 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC-
Confidence 66555 22221 122334456678889999998854443211 122233344556677788889888888888887432
Q ss_pred CCCchhhhhh-------------HHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 338 PHEFIFPYYG-------------LGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAA 403 (1065)
Q Consensus 338 ~~~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 403 (1065)
+....+.. .+..+-..+..+..++...+.+..+..++ -++..+-.-+...|+.+++...|-+-+
T Consensus 258 --Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 258 --DDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred --cchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 22111111 11111122333334444444443322222 233333333346688888777766544
Q ss_pred HhCC
Q 001509 404 KIDP 407 (1065)
Q Consensus 404 ~~~p 407 (1065)
..-|
T Consensus 336 g~kp 339 (932)
T KOG2053|consen 336 GDKP 339 (932)
T ss_pred CCCc
Confidence 4333
No 132
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=2.3e-09 Score=108.18 Aligned_cols=119 Identities=21% Similarity=0.153 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHH
Q 001509 426 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 505 (1065)
Q Consensus 426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1065)
+.+-+-|.-++..++|.+|+..|.+|+. ++|.++..|
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~-------------------------------------------l~P~nAVyy 118 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIE-------------------------------------------LDPTNAVYY 118 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh-------------------------------------------cCCCcchHH
Confidence 5567779999999999999999999998 778899999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccc
Q 001509 506 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 585 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 585 (1065)
.+.|.+|.++|.++.|++-++.++.++|.+..+|.+||..|..+|++.+|+..|++++.++|++...+..|.++-.+.++
T Consensus 119 cNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 119 CNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777766
Q ss_pred hH
Q 001509 586 WV 587 (1065)
Q Consensus 586 ~~ 587 (1065)
..
T Consensus 199 ~~ 200 (304)
T KOG0553|consen 199 PK 200 (304)
T ss_pred CC
Confidence 54
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.02 E-value=5.1e-08 Score=99.14 Aligned_cols=177 Identities=21% Similarity=0.239 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 001509 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLK 380 (1065)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~ 380 (1065)
.+..++..|..++..|+|.+|+..|..++...+.++....+.+.+|.+++..|++..|+..|+..+..+|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 356777788888888888888888888888777777777788888888888888888888888888887775 45777
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 381 ALGHIYVQLG-----------QIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 449 (1065)
Q Consensus 381 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 449 (1065)
.+|.+++... ...+|+..|+..+...|++..+. +|...+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-----------------------------~A~~~l~ 134 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE-----------------------------EAKKRLA 134 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH-----------------------------HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH-----------------------------HHHHHHH
Confidence 7777766542 34578888888888888876421 1111111
Q ss_pred HHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 450 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 529 (1065)
Q Consensus 450 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 529 (1065)
.+.. ....--+.+|..|.+.|.+..|+..++.++
T Consensus 135 ~l~~----------------------------------------------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 135 ELRN----------------------------------------------RLAEHELYIARFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHH----------------------------------------------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred HHHH----------------------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1111 022344567777888888888888888888
Q ss_pred HHCCCh---HHHHHHHHHHHHHcCCHHHH
Q 001509 530 FKYQDY---VDAYLRLAAIAKARNNLQLS 555 (1065)
Q Consensus 530 ~~~p~~---~~a~~~la~~~~~~g~~~~A 555 (1065)
...|+. ..++..++..+...|....|
T Consensus 169 ~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 169 ENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 877776 34677777777777777643
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.00 E-value=9.6e-09 Score=95.29 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=98.1
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 154 VLEAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1065)
Q Consensus 154 al~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1065)
+..+. ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+..|.+++.++|+++.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 34556 6778889999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCC
Q 001509 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1065)
Q Consensus 233 a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1065)
+++.+|.+++..|+ ...|...|+.++...-.
T Consensus 105 ~~~~ag~c~L~lG~---~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 105 APWAAAECYLACDN---VCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHhcc
Confidence 99999999999999 99999999998887633
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.00 E-value=6.9e-09 Score=115.02 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
+...|..++..|+|+.|+.+|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ ..+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999999999998 67789999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1065)
|+++.|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998877777664443
No 136
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=5.6e-08 Score=92.49 Aligned_cols=133 Identities=26% Similarity=0.226 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 81 ~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
+|+.+++-.|.+|-.+|-.. -|.--|.+++.+.|.-|.++..+|..+...|+|+.|.+.|+.+++++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 46666777777777777554 7888889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHH-HHHHHh
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF-QRALQL 226 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~ 226 (1065)
+..+.++.|..++--|+|.-|...+.+..+.+|++|-.+ ..-.+-...-+..+|...+ +++...
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~--LWLYl~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS--LWLYLNEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH--HHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999884332 1112223344566666544 344333
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=2.7e-08 Score=92.13 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~ 202 (1065)
+.+++.+|..++..|++++|+..|.+++..+|++ ..+++.+|.+++..|++..|+..|+.++..+|+.+ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678899999999999999999999999998876 57889999999999999999999999999988862 467889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
+|.++..+|+++.|+..|.+++...|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999999887654
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=4.6e-05 Score=84.95 Aligned_cols=79 Identities=14% Similarity=0.255 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVPAL 165 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~a~ 165 (1065)
-+++|..|...++. +...|+....|..++.+.+..|+.--|..+|..+-. ...+-...+
T Consensus 456 d~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fy 534 (1636)
T KOG3616|consen 456 DDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFY 534 (1636)
T ss_pred ccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHH
Confidence 47889999887764 567788888899999999999988888777754321 112223445
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 001509 166 LGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~ 185 (1065)
...|...+...+|.+|..+|
T Consensus 535 kvra~lail~kkfk~ae~if 554 (1636)
T KOG3616|consen 535 KVRAMLAILEKKFKEAEMIF 554 (1636)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 55555555556666666555
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.87 E-value=3.8e-08 Score=109.15 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=104.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1065)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1065)
+...|..++..|+|.+|+.+|.+++..+|++ ..+++.+|.++..+|+++.|+..+.+++.++|.+..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred cchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1065)
Q Consensus 245 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1065)
|+ +.+|+..|++++.++|+++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888887766443
No 140
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=0.00032 Score=75.47 Aligned_cols=480 Identities=14% Similarity=0.069 Sum_probs=257.3
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH-ccchHhHHHHHHHHHHHHHhCCCCHHHH
Q 001509 198 AIRLGIGLCRYKLG--QLGKARQAFQRALQLDPENV---EALVALAVMDLQ-ANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1065)
Q Consensus 198 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1065)
..++++|..+...| +..+++.+++..+...|... .....||.+++. ..+ ++-|...++++..+...-|..+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N---~elAksHLekA~~i~~~ip~fy 84 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKN---VELAKSHLEKAWLISKSIPSFY 84 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHcccccHH
Confidence 34555666666666 66666666666666555431 224444443332 222 5555555555544432222110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCCC-chhhhhhHH
Q 001509 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG-DYEKAGLYYMASVKEINKPHE-FIFPYYGLG 349 (1065)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~-~~~~~~~la 349 (1065)
....+++..++.+|+... .+..|...+.++++.....|- .-...+.++
T Consensus 85 ------------------------------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLa 134 (629)
T KOG2300|consen 85 ------------------------------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLA 134 (629)
T ss_pred ------------------------------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 123456667777777766 677777777777765433332 223456677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHH--HHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHcC
Q 001509 350 QVQLKLGDFRSALTNFEKVLEI-YPDN---CETLKA--LGHIYVQLGQ---IEKAQELLRKAAKIDPRDAQARTLLKKAG 420 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~-~p~~---~~~~~~--la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 420 (1065)
+++.-..++..|++.+.--... ++-. ..+++. .+.++....+ ...+.....++......++.-...++
T Consensus 135 ql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk--- 211 (629)
T KOG2300|consen 135 QLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK--- 211 (629)
T ss_pred HHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH---
Confidence 8888888888888774322221 1111 112222 2333333333 33444444444444333333222221
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 421 EEVPIEVLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 421 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
..+.++-. .|...|+...+...+++.-.. ..............+ +.......+. .-|
T Consensus 212 -----vFyl~lql~yy~~~gq~rt~k~~lkQLQ~s-iqtist~~~~h~e~i------lgsps~~l~~----------wlp 269 (629)
T KOG2300|consen 212 -----VFYLVLQLSYYLLPGQVRTVKPALKQLQDS-IQTISTSSRGHDEKI------LGSPSPILFE----------WLP 269 (629)
T ss_pred -----HHHHHHHHHHHhcccchhhhHHHHHHHHHH-HhccCCCCCCccccc------cCCCChHHHh----------hcc
Confidence 22333333 345568877777766644321 000000000000000 0000000000 011
Q ss_pred c-hhHHHHHHH--HHHHHcCChHHHHHHHHHHHHHCCC------h--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 500 N-KVTVLFNLA--RLLEQIHDTVAASVLYRLILFKYQD------Y--------VDAYLRLAAIAKARNNLQLSIELVNEA 562 (1065)
Q Consensus 500 ~-~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~------~--------~~a~~~la~~~~~~g~~~~A~~~~~~a 562 (1065)
. ..-++..+. ..-.-.|-+++|.++-.+++..... . ...+-.++.+-.-.|++.+|++.+..+
T Consensus 270 keqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm 349 (629)
T KOG2300|consen 270 KEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDM 349 (629)
T ss_pred HhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 111111111 1112346677777777777653211 1 113344566677889999999888777
Q ss_pred HHHC---CC-------ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHH--HhhHHHHHHHHHhhhhcChhHH
Q 001509 563 LKVN---GK-------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT--LSLGNWNYFAALRNEKRAPKLE 630 (1065)
Q Consensus 563 l~~~---p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~--~~lg~~~y~~~~~~~~~~~~~~ 630 (1065)
.+.. |. .+.+.+.+|......+-++.|...|..+.+.....+..++ ..++.. |...
T Consensus 350 ~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~----------- 417 (629)
T KOG2300|consen 350 KNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI----------- 417 (629)
T ss_pred HHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh-----------
Confidence 6653 43 3457778888888899999999999999998777666544 456666 7776
Q ss_pred hhhHHHHHHHHHHHHhhCCcc----------hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-CCCcchHHHHHHHH
Q 001509 631 ATHLEKAKELYTRVIVQHTSN----------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAH 699 (1065)
Q Consensus 631 ~~~~~~A~~~~~~~l~~~p~~----------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~lg~ 699 (1065)
++.+.-.+.++ .+.|.| ..+++..|...+.++++.+|...+.+.++..... ...-..-.+..||+
T Consensus 418 -~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 418 -GDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred -ccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 44333333322 233432 2345566777788999999999999998876211 00012335677899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHHHhhc--HHHHHHHHH
Q 001509 700 VYFAQGNFALAMKMYQNCLRKFYYNTDAQIL----LYLARTHYEAEQ--WQDCKKSLL 751 (1065)
Q Consensus 700 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~lg~~~~~~g~--~~~A~~~~~ 751 (1065)
+....|+..++..+..-++..-...+|..+. ..+-.+|...|+ .....+.|.
T Consensus 494 v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 9999999999999999888776566662222 233445555666 444444443
No 141
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=1.5e-07 Score=89.59 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
+..++.+|..|-..|-+.-|...|.+++.+.|.-+.++..+|..+...|+|+.|...|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 34678889999999999999999999999999999999999999999999999999999999999999 77789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHH
Q 001509 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1065)
+--|++.-|...|.+-.+.+|+++---..|-....... +.+|...+.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d----P~~A~tnL~ 190 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD----PKQAKTNLK 190 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC----HHHHHHHHH
Confidence 99999999999999999999998854333332222222 555555443
No 142
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=9.1e-08 Score=97.82 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHH
Q 001509 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR---YSDSLEFYK 186 (1065)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~---~~~Al~~~~ 186 (1065)
.+..+.-++.-+..+|+++..|..+|.+|+..|++..|...|.+++++.|+|+..+..+|.+++.... ..++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34455555666666777777777777777777777777777777777777777777776666655432 346666677
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1065)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1065)
+++..+|.+ ..+++.+|..++..|+|.+|+..|+.++...|.+.
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 777777766 55566667777777777777777777666666543
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.82 E-value=1.4e-06 Score=89.48 Aligned_cols=313 Identities=16% Similarity=0.122 Sum_probs=205.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----chHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---ALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIR 200 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~ 200 (1065)
.-.+..|.-++...++.+|+..+.+.+..-.+... .+-.+..+....|.|.+++..--..+...-+. .-.++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777778888888888877765433322 23334456677777777766544433332111 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC------HH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC------AM 269 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 269 (1065)
..++..+..+-++.+++.+-...+.+....+ .+...++..+...+. ++++++.|+.++....++ ..
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~---fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV---FQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH---HHHHHHHHHHHHHHhhccCCceeeee
Confidence 6777777777778888877777766533222 445566666666666 888888888887754332 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCC
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPH 339 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~ 339 (1065)
++..|+.+|....++++|.-+..++........ ....+++.++.++..+|..-+|.++.+.+.+.. ++.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677788888888888888888777776543221 234567788999999999999999999887632 2445
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhCCC
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQIEK-----AQELLRKAAKIDPR 408 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~ 408 (1065)
........+|.+|...|+.+.|..-|+.+...... ...++...+.++....-..+ |+++-.+++++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 56667788999999999999999999998875321 13445555555544433333 77777777665433
Q ss_pred cHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 409 DAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 409 ~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
-..-... ..+...++.+|...|.-++-...+.++-+
T Consensus 324 IG~K~~v---------lK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 324 IGAKLSV---------LKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhhhHHH---------HHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 2211111 25678889999888888877777766544
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.79 E-value=1.6e-07 Score=93.06 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=100.3
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHH
Q 001509 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1065)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1065)
+....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|.+++...|.. ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 4556788999999999999999999999999887653 4689999999999999999999999999999998 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC
Q 001509 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1065)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1065)
.+|.++...|+...+...+..++.. +.+|+..+++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8999999999987777666665432 677888888888888776
No 145
>PRK15331 chaperone protein SicA; Provisional
Probab=98.79 E-value=1.1e-07 Score=88.61 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=100.1
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchH
Q 001509 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1065)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1065)
.+..+.+..-...+..|.-++..|++++|..+|.-+.-.+|.++..|+++|.++...++|++|+..|..+..+.+++ +.
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~ 106 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YR 106 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CC
Confidence 34556666667889999999999999999999999999999999999999999999999999999999999999988 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001509 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1065)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1065)
+.+..|.|++.+|+...|+.+|..++. .|.+
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 689999999999999999999999998 4543
No 146
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.79 E-value=1.5e-06 Score=89.16 Aligned_cols=247 Identities=15% Similarity=0.126 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 001509 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETL 379 (1065)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~ 379 (1065)
......|.-++...++.+|+..+.+.+..+.+.......+-.+..+...+|.|++++.+--..+....+ -.+++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777788888888888877655433333344555667777888888776654444432111 24678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhh
Q 001509 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 459 (1065)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 459 (1065)
.+++..+....++.+++.+-...+.+....+ ...+......++..+...+.++++++.|+.++....
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~----------~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~--- 153 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRA----------GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH--- 153 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc----------ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh---
Confidence 8889999888899999988887777644333 122335677789999999999999999999987422
Q ss_pred hcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh----
Q 001509 460 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---- 535 (1065)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 535 (1065)
..........++..+|.+|....++++|..+..++..+...+
T Consensus 154 ----------------------------------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d 199 (518)
T KOG1941|consen 154 ----------------------------------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD 199 (518)
T ss_pred ----------------------------------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence 111223356789999999999999999999999988754322
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCChHHHHHhhhhhccccchHHHHHHHHHhhhc
Q 001509 536 ------VDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGDLELKNDDWVKAKETFRAASDA 599 (1065)
Q Consensus 536 ------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 599 (1065)
.-+++.++..+..+|..-.|.++.+++.++. +-.......+|.+|...|+.+.|...|+.+...
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2366788888999999999999999998764 223345667999999999999999999988763
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=0.00032 Score=76.67 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCChH-HHHHhhhhhccccchHHHHHH
Q 001509 518 TVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKET 592 (1065)
Q Consensus 518 ~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 592 (1065)
.+++..+|+.++..-- .+...++.++..-...- ..+.....+++++.+...++. +|..+-+.-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 6677788888775322 23344444444333222 366777888888887655554 555566666666678899999
Q ss_pred HHHhhhcCCC-CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHH
Q 001509 593 FRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 671 (1065)
Q Consensus 593 ~~~al~~~~~-~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A 671 (1065)
|.++-+.... ++.+...++-. |+.. ++..-|..+|+--|...++.+...+.....+...++-..|
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mE--y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALME--YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHH--HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 9999875443 35554444433 5555 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 001509 672 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 722 (1065)
Q Consensus 672 ~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 722 (1065)
..+|++++...- + ......+|..+-..-..-|+...+++.=++-...|+
T Consensus 455 R~LFEr~l~s~l-~-~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVL-S-ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccC-C-hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999998711 0 013456888887777788998888888777777766
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.78 E-value=1.6e-07 Score=86.87 Aligned_cols=107 Identities=29% Similarity=0.372 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001509 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 382 (1065)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 382 (1065)
..++.+|..+...|++++|+..|..++...+.++....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5678888888888889889888888887654444446678888999999999999999999988887775 5778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001509 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1065)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 412 (1065)
|.++...|++++|+.++.+++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 999999999999999999999888887753
No 149
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.5e-05 Score=85.21 Aligned_cols=440 Identities=14% Similarity=0.108 Sum_probs=265.1
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHH--h---CC----------CCHHHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQL-LLAKGEVEQASSAFKIVLE--A---DR----------DNVPALLGQACVE 172 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al~--~---~p----------~~~~a~~~la~~~ 172 (1065)
.|+..++.+...-.++-.+...++..+.+ |+..|.+.. ...++.... . .| .+....+..|.++
T Consensus 32 ~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 32 EFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred chHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 35577777777777766555555555544 444454322 222222211 1 11 2356678889999
Q ss_pred HHcCChHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHHcCCHHHHHHHHHHH---HHh---CC--CCH---------
Q 001509 173 FNRGRYSDSLEFYKRALQVHPS----CPGAIRLGIGLCRYKLGQLGKARQAFQRA---LQL---DP--ENV--------- 231 (1065)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~---~p--~~~--------- 231 (1065)
+....+..|++........-.. ....+-+..-..+......++|+.++.-. +.. .| ++.
T Consensus 111 yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~ 190 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTL 190 (696)
T ss_pred eeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccC
Confidence 9999999999887766554321 12233344444555555666666544322 211 01 000
Q ss_pred ----------------HHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 232 ----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1065)
Q Consensus 232 ----------------~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1065)
.+...-...++...+ ..-+....+.+.....+.+.++...+..++..|+|.+|.+++...-
T Consensus 191 s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~---Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 191 SPSAAERSFSTADLKLELQLYKVRFLLQTRN---LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CcchhcccchhhccchhhhHhhHHHHHHHHH---HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 011111122233322 5555555666666667889999999999999999999998876542
Q ss_pred h-ccCC---CCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------C-------CCCCchhhhhhHHHHHHH
Q 001509 296 A-VTNH---GPT--KSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--------N-------KPHEFIFPYYGLGQVQLK 354 (1065)
Q Consensus 296 ~-~~~~---~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~-------~~~~~~~~~~~la~~~~~ 354 (1065)
- .... .|. .-..|.++|.++++.|.|.-+..+|.+++... . .......+.|+.|..|..
T Consensus 268 i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh 347 (696)
T KOG2471|consen 268 IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH 347 (696)
T ss_pred cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh
Confidence 1 1111 111 23456899999999999999999999999511 0 112334678999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------------------------------------------
Q 001509 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-------------------------------------------- 390 (1065)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-------------------------------------------- 390 (1065)
.|++-.|.++|.+++..+-.+|..|..++.+.....
T Consensus 348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~ 427 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSN 427 (696)
T ss_pred cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceecccccc
Confidence 999999999999999999999999999999887430
Q ss_pred -----CHHHHHHHHHHHHHhCCCcHHHHHHHH------Hc-------------------CC---CCC-------------
Q 001509 391 -----QIEKAQELLRKAAKIDPRDAQARTLLK------KA-------------------GE---EVP------------- 424 (1065)
Q Consensus 391 -----~~~~A~~~~~~al~~~p~~~~a~~~l~------~~-------------------~~---~~~------------- 424 (1065)
-.+-|.-+++.++-+-|...+.-..+. +. +. ..|
T Consensus 428 ~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm 507 (696)
T KOG2471|consen 428 QLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENM 507 (696)
T ss_pred CCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHH
Confidence 023455555555554432211000000 00 00 000
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 425 -IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 425 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
..++-+.+.+-...|+.-.|+..-.+.+.... ...
T Consensus 508 ~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~--------------------------------------------lS~ 543 (696)
T KOG2471|consen 508 RQAIFANMAYVELELGDPIKALSAATKLLQLAD--------------------------------------------LSK 543 (696)
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh--------------------------------------------hhh
Confidence 24566667777888999999999888886422 223
Q ss_pred HHHHHHH-----HHHHcCChHHHHHHHHHHHH-----------------------HCC----------Ch-----HHHHH
Q 001509 504 VLFNLAR-----LLEQIHDTVAASVLYRLILF-----------------------KYQ----------DY-----VDAYL 540 (1065)
Q Consensus 504 ~~~~la~-----~~~~~g~~~~A~~~~~~al~-----------------------~~p----------~~-----~~a~~ 540 (1065)
++..+|. .+..+.+..+|...+.--+- .+| .. ...++
T Consensus 544 ~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~ 623 (696)
T KOG2471|consen 544 IYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFA 623 (696)
T ss_pred HHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHH
Confidence 3333333 33444555555554433110 011 00 12557
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHhhhhhccccchHHHHHHHHHh
Q 001509 541 RLAAIAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKNDDWVKAKETFRAA 596 (1065)
Q Consensus 541 ~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 596 (1065)
+||..+.-+|++++|..++..+..+-+ ..+.+......+-+++|....|...+++.
T Consensus 624 nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 624 NLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 788888888888888888887777766 44555555555666778877777777654
No 150
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=3.1e-06 Score=101.12 Aligned_cols=229 Identities=15% Similarity=0.193 Sum_probs=187.8
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHh
Q 001509 17 VALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYL 96 (1065)
Q Consensus 17 i~~~~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~ 96 (1065)
+|++.-|.++.|+..++...|...=.|+..-...+..+..+.|+.+.++++..- + | ....++..+|..+-.+-...
T Consensus 1435 ~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI-N--~-REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1435 RDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI-N--F-REEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred cccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-C--c-chhHHHHHHHHHHHhHHHhh
Confidence 556777999999999999999999999999999999999999999999997641 1 1 11234555666555555555
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 97 GKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1065)
Q Consensus 97 g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1065)
|--+ .-.+.|++|.+..- -...+..+..+|...+.+++|.++|+.+++...+....|..+|..++++.
T Consensus 1511 G~ee-----------sl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1511 GTEE-----------SLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred CcHH-----------HHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 5322 45667777765532 34567788899999999999999999999988888899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHH
Q 001509 177 RYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~ 255 (1065)
+-+.|..++.+|+..-|.. ...+.-..|.+-++.|+.+.++.+|+-.+..+|.-.+.|..+...-...++ ......
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~ 1655 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRD 1655 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHH
Confidence 9999999999999999984 134455678888999999999999999999999999999999999999888 888888
Q ss_pred HHHHHHHhC
Q 001509 256 KMQRAFEIY 264 (1065)
Q Consensus 256 ~~~~al~~~ 264 (1065)
+|++++.+.
T Consensus 1656 lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1656 LFERVIELK 1664 (1710)
T ss_pred HHHHHHhcC
Confidence 999988765
No 151
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=0.00069 Score=73.01 Aligned_cols=424 Identities=16% Similarity=0.120 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001509 42 LWLIIAREYFKQG--KVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1065)
Q Consensus 42 ~~~~~a~~y~~~g--~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1065)
.++-+|..+-.+| ++..+|+.++......+.. .-.+.....||.+.+..-+ +++.|...+++
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~------~veart~LqLg~lL~~yT~----------N~elAksHLek 72 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISF------LVEARTHLQLGALLLRYTK----------NVELAKSHLEK 72 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChH------HHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHH
Confidence 4567888888888 8999999999986654421 1233445566766654432 34578888888
Q ss_pred HhhcC---CCCh----hhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 120 ASRID---MHEP----STWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 120 a~~~~---p~~~----~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
+..+- |+.. .+.-.++.+|.... .+..|...+.+++......+ ..++.+|.++.-..++..|++.+.-
T Consensus 73 A~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 73 AWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred HHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 76543 4332 34556788888777 88999999999999876554 4568899999999999999988432
Q ss_pred HHHh-CCCCchHHHHH------HHHHHHHcCC---HHHHHHHHHHHHHhCCCCH---HH----HHHHHHH-HHHccchHh
Q 001509 188 ALQV-HPSCPGAIRLG------IGLCRYKLGQ---LGKARQAFQRALQLDPENV---EA----LVALAVM-DLQANEAAG 249 (1065)
Q Consensus 188 al~~-~p~~~~~~~~~------la~~~~~~g~---~~~A~~~~~~al~~~p~~~---~a----~~~la~~-~~~~~~~~~ 249 (1065)
.... +|-. ..++. .+.++....+ ...+......+......++ +. ++.+-.. |...|+...
T Consensus 153 ga~sAd~~~--~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt 230 (629)
T KOG2300|consen 153 GAESADHIC--FPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRT 230 (629)
T ss_pred cccccchhh--hHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 2211 1222 22222 2333333333 3344444444444332222 21 2223322 333455334
Q ss_pred HHHHHHHHHHHHHh-CCC------------CH-----------HHHHHH--HHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 001509 250 IRKGMEKMQRAFEI-YPY------------CA-----------MALNYL--ANHFFFTGQHFLVEQLTETALAVTNHGPT 303 (1065)
Q Consensus 250 ~~~A~~~~~~al~~-~p~------------~~-----------~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 303 (1065)
...+++.++..+.. .+. .+ .++..+ ...-...|-+++|.++.++++......+.
T Consensus 231 ~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq 310 (629)
T KOG2300|consen 231 VKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ 310 (629)
T ss_pred hHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 55555655555432 111 11 111111 12223457788888888888865433322
Q ss_pred c-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-------chhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 304 K-----------SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-------FIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 304 ~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
. ...+-.++.+-.-.|++.+|+.....+.+.....|. ....++.+|......|.++.|...|
T Consensus 311 ~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf 390 (629)
T KOG2300|consen 311 ADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHF 390 (629)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHH
Confidence 1 123344566677799999999999888875544444 2334566777777888999999999
Q ss_pred HHHHHhCCC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 001509 366 EKVLEIYPD-N--CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ---ARTLLKKAGEEVPIEVLNNIGVIHFEKG 439 (1065)
Q Consensus 366 ~~~l~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~l~~~~~~~~~~~~~~la~~~~~~g 439 (1065)
..+.+.-.. + ..+..++|.+|.+.|+-+.-.+.++. +.|.+.. ...+ ...+++..|...+.++
T Consensus 391 ~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l--------~a~~~~v~glfaf~qn 459 (629)
T KOG2300|consen 391 IEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL--------EASILYVYGLFAFKQN 459 (629)
T ss_pred HHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH--------HHHHHHHHHHHHHHhc
Confidence 999876332 2 34566789999998876654444443 3443211 1111 1257888899999999
Q ss_pred CHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChH
Q 001509 440 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 519 (1065)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 519 (1065)
++.+|...+.+.++.... .+......-.+..++.+....|+..
T Consensus 460 ~lnEaK~~l~e~Lkmana-------------------------------------ed~~rL~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 460 DLNEAKRFLRETLKMANA-------------------------------------EDLNRLTACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred cHHHHHHHHHHHHhhcch-------------------------------------hhHHHHHHHHHHHHHHHHHHhcchH
Confidence 999999999998874210 0012224456677888888889999
Q ss_pred HHHHHHHHHHHH
Q 001509 520 AASVLYRLILFK 531 (1065)
Q Consensus 520 ~A~~~~~~al~~ 531 (1065)
++.....-++..
T Consensus 503 es~nmvrpamql 514 (629)
T KOG2300|consen 503 ESRNMVRPAMQL 514 (629)
T ss_pred HHHhccchHHHH
Confidence 888887777653
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.74 E-value=1.1e-07 Score=83.68 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
+++.+|.+++..|++++|+..|.+++...|.+..+++.+|.++...|+++.|+.+|++++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 567788888888888888888888888888888888888888888888888888888888888887 4667888888888
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 001509 210 LGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (1065)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888887766
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=98.74 E-value=8e-07 Score=96.63 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHh---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1065)
Q Consensus 109 ~~~~A~~~~~~a~---~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1065)
....|+.+|.+++ .++|..+.+|-.++.+++.. ....+|..+..+++.++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999 99999999999998888765 24578889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHH-HHHHccchHhHHHHH
Q 001509 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LAV-MDLQANEAAGIRKGM 254 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~-~~~~~~~~~~~~~A~ 254 (1065)
+++.|+..|++++.++|+. +.+++..|......|+.+.|+..++++++++|.-..+-.. +.. +|+..+ +++|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 8889999999999999999999999999999976655332 222 444443 67777
Q ss_pred HHHHHHH
Q 001509 255 EKMQRAF 261 (1065)
Q Consensus 255 ~~~~~al 261 (1065)
..|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7765543
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.73 E-value=4e-08 Score=80.53 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=42.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p 193 (1065)
++..|+.+|.+++..|++++|+..|.+++..+|+++.+++.+|.++...| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556666666666666666666666666666666666666666666666 46666666666666655
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=98.73 E-value=6.8e-07 Score=97.15 Aligned_cols=166 Identities=13% Similarity=0.080 Sum_probs=128.0
Q ss_pred hcCCCCh---hhH----HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChH
Q 001509 122 RIDMHEP---STW----VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYS 179 (1065)
Q Consensus 122 ~~~p~~~---~~~----~~~g~~~~~~g~---~~~A~~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~ 179 (1065)
...|.+. .+| +.+|...+..+. ...|+.+|.+++ ..+|....++..+|.|++.. ....
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~ 321 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQ 321 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 3335555 444 677877776664 578899999999 88999999999999988765 2345
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHH
Q 001509 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1065)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1065)
+|+.+..+++.++|.+ +.++..+|.+++..++++.|...|++++.++|+...+++..|.+....|+ .++|+..+++
T Consensus 322 ~a~~~A~rAveld~~D-a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~ 397 (458)
T PRK11906 322 KALELLDYVSDITTVD-GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence 7888889999999999 77888999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHH
Q 001509 260 AFEIYPYCAMALNYLANH-FFFTGQHFLVEQLT 291 (1065)
Q Consensus 260 al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~ 291 (1065)
+++++|....+-...-.+ .+...-.+.++.+|
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 999998765433222222 33333344444444
No 156
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.72 E-value=2.1e-07 Score=97.39 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=97.0
Q ss_pred hHHHhHHHHHH-HhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHH
Q 001509 652 LYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 729 (1065)
Q Consensus 652 ~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 729 (1065)
...++..+..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|+++.|+..|+++++.||..+. +.+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 34555666654 5679999999999999999996643 4689999999999999999999999999999987665 899
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 730 LLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 730 ~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
++.+|.++...|+++.|+.+|++++..+|++..+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999999999999999999987544
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.71 E-value=4e-07 Score=95.20 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=92.0
Q ss_pred hhhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chHHHH
Q 001509 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1065)
Q Consensus 128 ~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1065)
...++..|..+ +..|+|++|+..|+.++..+|++ +.+++.+|.+|+..|+|++|+..|++++..+|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 36677788776 56789999999999999999987 5789999999999999999999999999988876 366788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
.+|.++..+|+++.|+..|+++++..|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 889999999999999999999999999877543
No 158
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.71 E-value=7.7e-06 Score=81.99 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHH
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1065)
.+..|+..|...+..|++++|+..|+.+....|.+ ..+.+.++.++++.++|+.|+..+++.+.++|.++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988865 57889999999999999999999999999999883 44556
Q ss_pred HHHHHHH
Q 001509 202 GIGLCRY 208 (1065)
Q Consensus 202 ~la~~~~ 208 (1065)
..|.+++
T Consensus 113 lkgLs~~ 119 (254)
T COG4105 113 LKGLSYF 119 (254)
T ss_pred HHHHHHh
Confidence 6666644
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7e-07 Score=91.42 Aligned_cols=120 Identities=22% Similarity=0.159 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHH
Q 001509 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1065)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 257 (1065)
.+.-+.-++..+..+|++ ..-|..+|.+|..+|++..|...|.+++++.|++++.+..++.+++...+.....++...+
T Consensus 138 ~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344455566666777777 5557777777777777777777777777777777777777777766665555566777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001509 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1065)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (1065)
++++..+|.++.+++.||..++..|+|.+|...++..+...
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777776654
No 160
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.2e-05 Score=79.91 Aligned_cols=248 Identities=16% Similarity=0.086 Sum_probs=154.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHH
Q 001509 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1065)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1065)
.+-+|..|.|..++......-.. +........+.++|..+|.+..-+.-....- .....+...++.....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~----~~~~e~d~y~~raylAlg~~~~~~~eI~~~~------~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS----KTDVELDVYMYRAYLALGQYQIVISEIKEGK------ATPLQAVRLLAEYLEL 84 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc----cchhHHHHHHHHHHHHccccccccccccccc------CChHHHHHHHHHHhhC
Confidence 34456667777666655554322 2445666777777777777654433222111 1112233334444444
Q ss_pred cCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHH
Q 001509 355 LGDFRSALTNFEKVLE-IY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIG 432 (1065)
Q Consensus 355 ~g~~~~A~~~~~~~l~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la 432 (1065)
-++.+.-+..+...+. .. ..+......-|.+|...|++++|+........+ ++.-.-.
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------------E~~Al~V 144 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------------EAAALNV 144 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------------HHHHHHH
Confidence 4444444443333332 22 223345555677788888888888877763322 2222224
Q ss_pred HHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHH
Q 001509 433 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 512 (1065)
Q Consensus 433 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 512 (1065)
.++.+..+++-|...++++.... .-.++.++|..|
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---------------------------------------------ed~tLtQLA~aw 179 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---------------------------------------------EDATLTQLAQAW 179 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---------------------------------------------hHHHHHHHHHHH
Confidence 56677777888888888776521 333444555555
Q ss_pred HHc----CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHH
Q 001509 513 EQI----HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 588 (1065)
Q Consensus 513 ~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 588 (1065)
... +++..|.-+|+..-...|..+...+..+.+++.+|++++|...++.++..++++|+++.++..+-...|...+
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 432 4678888888888887777788888888888889999999999999998888889888888888888887766
Q ss_pred HHHHHHHhh
Q 001509 589 AKETFRAAS 597 (1065)
Q Consensus 589 A~~~~~~al 597 (1065)
+..-+-.-+
T Consensus 260 ~~~r~l~QL 268 (299)
T KOG3081|consen 260 VTERNLSQL 268 (299)
T ss_pred HHHHHHHHH
Confidence 655444333
No 161
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.70 E-value=1.8e-07 Score=94.54 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=99.9
Q ss_pred HhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHHHHHH
Q 001509 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 733 (1065)
Q Consensus 655 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 733 (1065)
++..|.-++..|+|..|...|...+..+|++.+ .+.++|.||.+++.+|+|..|...|..+++.+|..+. ++.++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 566677778899999999999999999998865 5789999999999999999999999999999988776 8999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 734 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 734 g~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
|.+....|+.++|..+|+++++.+|+.+.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999987765
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.69 E-value=4.8e-07 Score=89.68 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=103.4
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 573 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 573 (1065)
..+.....++++|.++...|++++|+.+|++++...|+. ..++..+|.++...|+++.|+.++.+++...|.++..+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 345677889999999999999999999999999877653 57899999999999999999999999999999999999
Q ss_pred HHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcc
Q 001509 574 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 651 (1065)
Q Consensus 574 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 651 (1065)
..+|.++...|+...+...+..++ ..+.+|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~----------------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAE----------------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHH----------------------------------HHHHHHHHHHHHHHhhCchh
Confidence 999999999888776664444321 55677889999999999887
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.69 E-value=7.3e-08 Score=78.98 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 228 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 228 (1065)
++.+|..+|.+++..|+|++|+..|.+++..+|++ +.+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777777777888888888888888777777 667777777777777 67777777777777776
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.68 E-value=6e-07 Score=88.68 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHH
Q 001509 111 ILATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 111 ~~A~~~~~~a~~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
..+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34455555444444443 4566777888888888888888888887776542 347778888888888888888888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcC
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLG 211 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g 211 (1065)
.+++.+.|.. ...+..+|.++..+|
T Consensus 96 ~~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 96 FQALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 8888877777 455677777777333
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.68 E-value=1.1e-06 Score=101.47 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=116.0
Q ss_pred CCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHH
Q 001509 124 DMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--------YSDSLEFYKRALQ 190 (1065)
Q Consensus 124 ~p~~~~~--~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--------~~~Al~~~~~al~ 190 (1065)
-|.++.+ ++.+|..++..+. +..|+.+|+++++.+|+++.++..++.++..... ...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4555554 4667888877665 8899999999999999999999988887766432 3355555566555
Q ss_pred h--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH
Q 001509 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1065)
Q Consensus 191 ~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1065)
. .|.. +.++..+|..+...|++++|...|++++.++| +..+|..+|.++...|+ +++|+..|.+++.++|..+
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5555 56788889999999999999999999999999 57899999999999999 9999999999999999988
Q ss_pred H
Q 001509 269 M 269 (1065)
Q Consensus 269 ~ 269 (1065)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.67 E-value=5.1e-08 Score=83.41 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001509 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1065)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (1065)
+|+++.|+.+|++++...|. +...++.+|.+++..|+|.+|+.++++ +..+|.+ ...++.+|.|++.+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 56777777777777777774 345566677777777777777777777 6666655 4556666777777777777777
Q ss_pred HHHHH
Q 001509 219 AFQRA 223 (1065)
Q Consensus 219 ~~~~a 223 (1065)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
No 167
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=5.1e-07 Score=86.51 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=95.8
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHH
Q 001509 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1065)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1065)
..++...+...++.++...+..+....+.+.+|.+++..|++++|...|..++...+.+.....+.+.++.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 46667777777777777666665667788889999999999999999999988754333334567888999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1065)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 403 (1065)
+|+..+..+ ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999998663 3344457788889999999999999999998764
No 168
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=9e-07 Score=84.81 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=70.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHcCCHH
Q 001509 140 AKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLG 214 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~ 214 (1065)
..++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ...+++.+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666666666666666 4556666777777777777777777776665443 2335566666667777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Q 001509 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1065)
Q Consensus 215 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1065)
+|+..+.. +...+-.+.++..+|.++...|+ +++|+..|+++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKA 144 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHh
Confidence 76666654 22223334445556666666655 55665555554
No 169
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.66 E-value=7.5e-06 Score=82.08 Aligned_cols=195 Identities=17% Similarity=0.235 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HH
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA---LV 235 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~ 235 (1065)
.+..|+..|...++.|+|.+|...|+.+...+|.. ...+.+.++.++++.++++.|+..+++-+.+.|+++.+ ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999999877 35678889999999999999999999999999987644 55
Q ss_pred HHHHHHHHc-----cchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHH
Q 001509 236 ALAVMDLQA-----NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN 310 (1065)
Q Consensus 236 ~la~~~~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 310 (1065)
..|.+++.. .+......|+..|+..+...|++.-+-.....+-+ +... .+.--..
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~-----------~~d~---------LA~~Em~ 172 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVK-----------LNDA---------LAGHEMA 172 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHH-----------HHHH---------HHHHHHH
Confidence 666665543 33455778899999999999987644332222211 1111 1122345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
+|+.|.+.|.+..|+..++.+++.++..+....++..+..+|..+|-.++|...-.-+-...|++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 66777777777777777777777666555666666777777777777776665544333334443
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.7e-07 Score=95.83 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh-hh-----hhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001509 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YA-----DVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1065)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~-~~-----~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~ 115 (1065)
..-..|+.||+.|+|..|+..|++++..-..+. +. .....+..
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~------------------------------- 258 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLA------------------------------- 258 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHH-------------------------------
Confidence 445778999999999999999999754311000 00 00111223
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
++++++.+++..+.|..|+..+.++|..+|+|+.+++..|.++...|+|+.|+..|++++++.|++
T Consensus 259 --------------~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 259 --------------CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred --------------HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 344555555555555555555555555555555555555555555555555555555555555555
Q ss_pred chHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 001509 196 PGAIRLGIGLCRYKLGQLGKA-RQAFQRALQL 226 (1065)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 226 (1065)
..+...+..|..+...+... ...|.+++..
T Consensus 325 -ka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 325 -KAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555444443333 4455555543
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.62 E-value=9.6e-08 Score=77.10 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
.+|..++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777777777777777777777777777777777776665
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.62 E-value=9.6e-07 Score=95.10 Aligned_cols=111 Identities=16% Similarity=0.268 Sum_probs=84.5
Q ss_pred HHhHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC--c---
Q 001509 654 AANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--D--- 726 (1065)
Q Consensus 654 a~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~--- 726 (1065)
++..+|.+|... |+++.|+..|+++.+....... .....++..+|.++...|+|++|+..|+++...+...+ .
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 345678889888 9999999999999998754321 12346788999999999999999999999988643322 1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 727 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 727 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
...++..+.+++..|++..|...|.+....+|......
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 34567788899999999999999999999999664443
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.62 E-value=9e-07 Score=102.14 Aligned_cols=124 Identities=11% Similarity=0.058 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 176 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g 176 (1065)
.+.+..|+.+|++++.++|+++.++..++.++.... +...+...+.+++.. +|.++.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 346779999999999999999999999888776542 345666666676664 7778889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1065)
++++|...|++++.++|+ ...+..+|.++...|++++|+..|.+++.++|..+.
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999994 578999999999999999999999999999999875
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.61 E-value=0.00013 Score=76.17 Aligned_cols=302 Identities=19% Similarity=0.117 Sum_probs=205.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 001509 167 GQACVEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1065)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1065)
..|.+....|+-..|.+.-.+.-++ ..+..+.+++.-+..-.-.|+++.|..-|+.++. +|... +..|-.+|+...
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAq 165 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQ 165 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHH
Confidence 3455666677777887777777643 3344456667777777788888888888887764 44322 233333444433
Q ss_pred chHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001509 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1065)
Q Consensus 246 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1065)
..+..+.|..+..++....|.-+.++...-...+..|+++.|+++.+......-..+.. +-. ..|.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~--aeR------------~rAv 231 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV--AER------------SRAV 231 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh--HHH------------HHHH
Confidence 33347888888888888888887777777777777777777777776654332111100 000 0010
Q ss_pred HHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
- +...+... -.-+...|...-..++++.|+...+-..-+..+++.|+..++-.+++.+.+.
T Consensus 232 L------------------LtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 232 L------------------LTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred H------------------HHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 0 11111111 1234677888888899999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhh
Q 001509 406 DPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 485 (1065)
Q Consensus 406 ~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1065)
.|... ++.+|....--+.++.-++++-.+..
T Consensus 293 ePHP~--------------------ia~lY~~ar~gdta~dRlkRa~~L~s----------------------------- 323 (531)
T COG3898 293 EPHPD--------------------IALLYVRARSGDTALDRLKRAKKLES----------------------------- 323 (531)
T ss_pred CCChH--------------------HHHHHHHhcCCCcHHHHHHHHHHHHh-----------------------------
Confidence 88654 34555555444556666666554211
Q ss_pred hhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 001509 486 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-NNLQLSIELVNEALK 564 (1065)
Q Consensus 486 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~ 564 (1065)
..|++....+..+..-...|++..|..--+.+....|. ..++..++.+-... |+-.++..++-+++.
T Consensus 324 -----------lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 -----------LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -----------cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 56778888888888888889999988888888888876 56777778876655 888888888888876
Q ss_pred H
Q 001509 565 V 565 (1065)
Q Consensus 565 ~ 565 (1065)
-
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 175
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=5.2e-05 Score=75.49 Aligned_cols=234 Identities=11% Similarity=0.070 Sum_probs=160.0
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCChHHHHHhh
Q 001509 500 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLG 577 (1065)
Q Consensus 500 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 577 (1065)
......+.+.+.|..+|.+..-+.-.... ......+...++.+...-++.+.-+.-+.+.+... ..+......-+
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~---~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEG---KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred chhHHHHHHHHHHHHcccccccccccccc---cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 46677778888888888876544333222 12224455556666555666665555555444332 23334555667
Q ss_pred hhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhH
Q 001509 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 657 (1065)
Q Consensus 578 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 657 (1065)
.++...|+++.|.........+ +..++ -..+ +.+. ..++-|.+.++++.+++-+- .+..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~l----E~~Al--~VqI-~lk~------------~r~d~A~~~lk~mq~ided~--tLtQ 174 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENL----EAAAL--NVQI-LLKM------------HRFDLAEKELKKMQQIDEDA--TLTQ 174 (299)
T ss_pred HHhhcCCChHHHHHHHhccchH----HHHHH--HHHH-HHHH------------HHHHHHHHHHHHHHccchHH--HHHH
Confidence 7888899999999888863221 22222 2233 5555 77888888888888876553 3444
Q ss_pred HHHHHHh----cCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 001509 658 AGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 733 (1065)
Q Consensus 658 la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 733 (1065)
||..+.. .+.+..|.-+|+.+-+..+ ..+......+.|++.+|+|++|...++.+|.+ .+.++.++.++
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~-----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nl 247 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTP-----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccC-----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHH
Confidence 5554443 3478899999999888665 46778888999999999999999999999988 57778899999
Q ss_pred HHHHHHhhcHHHHH-HHHHHHHHhCCCCcchH
Q 001509 734 ARTHYEAEQWQDCK-KSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 734 g~~~~~~g~~~~A~-~~~~kal~~~P~~~~~~ 764 (1065)
-.+-...|+..++. +.+.+....+|+.+.+.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 88888888887755 55677777888876654
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.58 E-value=1.4e-06 Score=93.86 Aligned_cols=221 Identities=16% Similarity=0.090 Sum_probs=142.2
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001509 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF 436 (1065)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~ 436 (1065)
++++|...|.++ |.+|...|++++|...|.++....-....... ....+...+.++.
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~---------Aa~~~~~Aa~~~k 86 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFE---------AAKAYEEAANCYK 86 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHH---------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHH---------HHHHHHHHHHHHH
Confidence 667776666664 55667777888888888777654311100000 0144556666665
Q ss_pred HcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHc-
Q 001509 437 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI- 515 (1065)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~- 515 (1065)
.. ++.+|+.+|++++......+ ....-..++..+|.+|...
T Consensus 87 ~~-~~~~Ai~~~~~A~~~y~~~G-------------------------------------~~~~aA~~~~~lA~~ye~~~ 128 (282)
T PF14938_consen 87 KG-DPDEAIECYEKAIEIYREAG-------------------------------------RFSQAAKCLKELAEIYEEQL 128 (282)
T ss_dssp HT-THHHHHHHHHHHHHHHHHCT--------------------------------------HHHHHHHHHHHHHHHCCTT
T ss_pred hh-CHHHHHHHHHHHHHHHHhcC-------------------------------------cHHHHHHHHHHHHHHHHHHc
Confidence 55 99999999999987422110 1122567888999999999
Q ss_pred CChHHHHHHHHHHHHHCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------hHHHHHhhhhhcc
Q 001509 516 HDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNALSMLGDLELK 582 (1065)
Q Consensus 516 g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~ 582 (1065)
|+++.|+.+|++++..... ...++..+|.++...|+|.+|+..|+++....-++ ...+...+.+++.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 9999999999999975321 15588899999999999999999999998754221 1345667889999
Q ss_pred ccchHHHHHHHHHhhhcCCCCCh----HHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCC
Q 001509 583 NDDWVKAKETFRAASDATDGKDS----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 649 (1065)
Q Consensus 583 ~g~~~~A~~~~~~al~~~~~~d~----~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 649 (1065)
.|++..|...|++.....|.-.. ..+..|... | ..... ..+..|+..|..+-.++|
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A-~----~~~D~------e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA-Y----EEGDV------EAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH-H----HTT-C------CCHHHHCHHHTTSS---H
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-H----HhCCH------HHHHHHHHHHcccCccHH
Confidence 99999999999999887654211 122222222 1 11111 567778888877666655
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.58 E-value=5.1e-07 Score=79.35 Aligned_cols=99 Identities=29% Similarity=0.486 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001509 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1065)
Q Consensus 85 ~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1065)
++..+|.++...|+.. +|+..+.+++...|.++.+++.+|.++...|+++.|+..|..++...|.+..+
T Consensus 2 ~~~~~a~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYD-----------EALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHH-----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 3566777777776655 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
+..+|.++...|++..|...+.+++...|.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999988774
No 178
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=1.6e-05 Score=95.24 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=158.2
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-DRDN----VPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
...-|.+.+..+|++...|+.....+++.++.+.|...++++|.. ++.. ...|..+-.....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 355677778888888888888888888888888888888888853 3332 33455444445555666667778888
Q ss_pred HHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCC-
Q 001509 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY- 266 (1065)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~- 266 (1065)
|.+..... .++..+..+|...+.+++|.++|+.+++...+....|..++..+++.++ -+.|...+.+|++.-|.
T Consensus 1523 Acqycd~~--~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne---~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1523 ACQYCDAY--TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE---AEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHhcchH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH---HHHHHHHHHHHHhhcchh
Confidence 87765433 5677788888888888888888888888877777888888888888877 77788888888888887
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 267 -CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1065)
Q Consensus 267 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1065)
+..+....|.+-|..|+.+.+..+|+..+... |...+.|..+...-...|+...+..+|++++.
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay---PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY---PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC---ccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 66677777777777777777777777776653 55666777777777777777777777777764
No 179
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.2e-06 Score=92.69 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRD---------------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
.-..|..+++.|+|..|...|++++..-+. -..+++++|.|+.++++|..|+..+.++|...|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345789999999999999999998765321 13467888888888888888888888888888888
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC
Q 001509 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1065)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1065)
.-++|..|.++..+|+++.|+..|+++++++|.|..+...|..+..+... ......+.|.+++..-+
T Consensus 291 -~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 -VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKLA 357 (397)
T ss_pred -hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccc
Confidence 66688888888888888888888888888888888877777776655544 13334566666665443
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.57 E-value=1.3e-06 Score=86.33 Aligned_cols=108 Identities=23% Similarity=0.362 Sum_probs=90.1
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001509 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1065)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1065)
.....++.+|.++...|++++|+..|.+++...+.++....+++++|.++...|++++|+..|++++.++|.....+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 35678899999999999999999999999976544444556899999999999999999999999999999999999999
Q ss_pred HHHHH-------HcCCHH-------HHHHHHHHHHHhCCCcH
Q 001509 383 GHIYV-------QLGQIE-------KAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 383 a~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 410 (1065)
|.++. ..|+++ +|+.+|++++..+|.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99988 777766 55566666677777654
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.56 E-value=8.9e-08 Score=81.91 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
++|+.|+.+|++++..+|. +...++.+|.+++..|++++|+.++++ +..+|.++...+.+|.+++..|+|++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5688999999999999995 466788899999999999999999999 7888888899999999999999999999999
Q ss_pred HHH
Q 001509 186 KRA 188 (1065)
Q Consensus 186 ~~a 188 (1065)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 182
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.55 E-value=0.0002 Score=75.35 Aligned_cols=224 Identities=27% Similarity=0.374 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLE 183 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1065)
..+..+...+.......+.. .......+..+...+.+..+...+...+. ..+.....+...+..+...+.+..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445555555555555542 45555566666666666666666666655 455555666666666666666666666
Q ss_pred HHHHHHHhCCCCchHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccchHhHHHHHHHHHH
Q 001509 184 FYKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1065)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1065)
.+..++...+.. .......+. ++...|+++.|...|.+++...| .....+..++..+...++ +..++..+.+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR---YEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC---HHHHHHHHHH
Confidence 666666655554 222333334 56666666666666666655444 223333333333333444 5555555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Q 001509 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1065)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1065)
++...+.. ....+..++..+...+.+..|+..+..++... +
T Consensus 193 ~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~ 233 (291)
T COG0457 193 ALKLNPDD------------------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELD---P 233 (291)
T ss_pred HHhhCccc------------------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC---c
Confidence 55555441 22334444444444444555555554444421 2
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1065)
.....+..++..+...+.+..+...+.+++...|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 12233344444444444455555555555555544
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.55 E-value=2.7e-07 Score=74.50 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=57.1
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 410 (1065)
+.+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+.+|++++..+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788899999999999999999999999999999999999999999999999999999999864
No 184
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.54 E-value=0.0026 Score=71.35 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 001509 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-GIGLCRYKLGQLGKARQAFQR 222 (1065)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~-~la~~~~~~g~~~~A~~~~~~ 222 (1065)
.+.+...|...+...|.....|...|..-++.|....++.+|++++..-|-+ ...|. .++.+.-..|+.+.-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4666777778888888888888888888889999999999999998888866 34333 345555566777888888888
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHccchHhHHHHHHHHHHHHHh
Q 001509 223 ALQLDPEN---VEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1065)
Q Consensus 223 al~~~p~~---~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1065)
|+.....+ ...|-.+......+.+ +..-...|.+.++.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRilei 180 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEI 180 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhh
Confidence 88765543 3345555555544444 67777777777664
No 185
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.51 E-value=0.0002 Score=75.27 Aligned_cols=226 Identities=30% Similarity=0.391 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001509 142 GEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1065)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (1065)
+.+..+...+..++...+.. .......+..+...+.+..+...+...+. ..+.. ...+..++.++...+++..++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-AEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHhhHHHHH
Confidence 44555555555555554442 44445555555555555555555555554 23333 344455555555555555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Q 001509 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN-HFFFTGQHFLVEQLTETALA 296 (1065)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~ 296 (1065)
..+..++...+.. ......... ++...|++..+...+.+++.
T Consensus 116 ~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 116 ELLEKALALDPDP-------------------------------------DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHcCCCCc-------------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544444 333333333 45555555555555555543
Q ss_pred ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
..+........+...+..+...+++..|+..+..++... +. ....+..++..+...+.+..|+..+..++...|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN---PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC---cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 211012344555666666888999999999999999743 44 56778889999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 408 (1065)
...+..++..+...+.+..+...+.+++...|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 788888888888778899999999999999886
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.50 E-value=2.6e-06 Score=86.32 Aligned_cols=110 Identities=23% Similarity=0.288 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHH
Q 001509 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1065)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1065)
.+..+.-++..|+|..|...|...++..+.++..+.++|+||.+++.+|+|+.|...|..+.+.++.+|..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 45556666667777777777777777777777777888888888888888888888888888877777777777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001509 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1065)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1065)
++..+|+.++|..+|+++++.+|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888887665543
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.50 E-value=3.6e-06 Score=76.94 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=75.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chHHHH
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1065)
.+..++..|...+..|+|..|+..|+.+....|.. ..+.+.++.+++..++|.+|+..+++.++++|.+ ...+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678899999999999999999999999988765 5788999999999999999999999999999988 355778
Q ss_pred HHHHHHHHcCC
Q 001509 202 GIGLCRYKLGQ 212 (1065)
Q Consensus 202 ~la~~~~~~g~ 212 (1065)
.+|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888887765
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.50 E-value=0.00035 Score=73.18 Aligned_cols=280 Identities=19% Similarity=0.141 Sum_probs=203.2
Q ss_pred HHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1065)
.|.++-.++.++-.. .+.+++.-++..+..|+++.|..-|+.++. +|. ....+.++-.-....|.++.|..+-..+
T Consensus 102 lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~A 180 (531)
T COG3898 102 LARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERA 180 (531)
T ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 566666555433332 345666678889999999999999998875 332 1222333333445679999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHHH-HHccchHhHHHHHHHHHHHH
Q 001509 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL---DPENV---EALVALAVMD-LQANEAAGIRKGMEKMQRAF 261 (1065)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~---~a~~~la~~~-~~~~~~~~~~~A~~~~~~al 261 (1065)
....|.. ...+...-...+..|+++.|+...+..... .++-. .+-+.-+... .-..+ ...|......++
T Consensus 181 a~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad---p~~Ar~~A~~a~ 256 (531)
T COG3898 181 AEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD---PASARDDALEAN 256 (531)
T ss_pred HhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHh
Confidence 9999999 444555566678899999999998876543 23211 1111111111 11222 678888899999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Q 001509 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (1065)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 341 (1065)
++.|+....-..-+..++..|+..++-.+++.+.+..++. .++..|....--+.++.-++++-......|++
T Consensus 257 KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--------~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 257 KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--------DIALLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999998875432 23344444444445555566655544456888
Q ss_pred hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 001509 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAKI 405 (1065)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 405 (1065)
....+..+...+.-|++..|...-+.+....|. ..++..|+.+-... |+-.++..++-++++.
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 889999999999999999999999999999886 56677777777655 9999999999999874
No 189
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.50 E-value=5.5e-08 Score=98.61 Aligned_cols=239 Identities=13% Similarity=0.074 Sum_probs=159.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
+-..|+.|+.+|.|++|+.||.+.+..+|.|+..+.+.|.+|++.+.|..|...+..++.++... ..+|...|.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 34578888999999999999999999999888888889999999999998888888888888776 56678888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1065)
|+..+|...++.++++.|++.+....++.+..-... .-+.+.-|....+ .+-
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~-----------~I~~KsT~G~~~A-----------------~Q~ 230 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRER-----------KIATKSTPGFTPA-----------------RQG 230 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh-----------hHHhhcCCCCCcc-----------------ccc
Confidence 889999999999999888876654444433221100 0011111111101 000
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1065)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1065)
..+++ ..-.-|..+...|.+..++.+|...+.... ........ +..+.+..++..++.-..+.+.
T Consensus 231 ~~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~---~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 231 MIQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATID---DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred hhhhc-----------cccCcchhhhhhhccccceeEeeccccccC---ccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00111 012235667777788888877766654321 22222222 6677778888888888888877
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001509 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR 413 (1065)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 413 (1065)
..|.........+..-.-.|...++...++.++.+.|.+..+.
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~ 338 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPK 338 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccch
Confidence 7766555555555555556677788888888888888766543
No 190
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.0069 Score=71.00 Aligned_cols=144 Identities=19% Similarity=0.099 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhh
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 580 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 580 (1065)
.+.+|..+|..-...|...+|++.|-++ +++..|.....+..+.|.|++-+.++..+.+... .+.+-..|..+|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHH
Confidence 5678888888888888888888888765 6677888888888888888888888877766432 233333444455
Q ss_pred ccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 581 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 581 ~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
.+.++..+-.++.. .| ...-.-..|+- ++.. +.|+.|.-+|..+ .-+..|+.
T Consensus 1177 Akt~rl~elE~fi~-----gp--N~A~i~~vGdr-cf~~------------~~y~aAkl~y~~v--------SN~a~La~ 1228 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-----GP--NVANIQQVGDR-CFEE------------KMYEAAKLLYSNV--------SNFAKLAS 1228 (1666)
T ss_pred HHhchHHHHHHHhc-----CC--CchhHHHHhHH-Hhhh------------hhhHHHHHHHHHh--------hhHHHHHH
Confidence 55555544332221 12 22233345666 5555 8888888887544 44677888
Q ss_pred HHHhcCCcHHHHHHHHHH
Q 001509 661 VLAEKGQFDVSKDLFTQV 678 (1065)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~ 678 (1065)
.+...|+|..|.+..+++
T Consensus 1229 TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 888889998888877765
No 191
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.49 E-value=3.7e-06 Score=76.88 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=99.0
Q ss_pred chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHH
Q 001509 651 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 729 (1065)
Q Consensus 651 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 729 (1065)
.+..++.-|.-....|+|.+|+..|+.+....|.+.+ ...+.+.+|.+|+..|++..|+..+++.++++|.+++ +-+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4556778888889999999999999999999997754 4689999999999999999999999999999888877 788
Q ss_pred HHHHHHHHHHhhc---------------HHHHHHHHHHHHHhCCCCcchH
Q 001509 730 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 730 ~~~lg~~~~~~g~---------------~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
++..|.+++.... ...|...|++++...|++..+.
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999999999876 7789999999999999986543
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=98.48 E-value=1.8e-06 Score=80.69 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=97.1
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
..+.++.....+..|.-++..|++++|..+|+-+...+|.+ ...++++|.|+..+++|++|+..|..+..++++++...
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 33455567788999999999999999999999999999999 77899999999999999999999999999999999999
Q ss_pred HHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH
Q 001509 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1065)
Q Consensus 235 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1065)
+..|.+++..|+ ...|+..|..++. .|.+.
T Consensus 109 f~agqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 109 FFTGQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred chHHHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 999999999999 9999999998887 45444
No 193
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=5.4e-06 Score=91.24 Aligned_cols=119 Identities=14% Similarity=0.124 Sum_probs=85.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHH
Q 001509 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (1065)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 215 (1065)
..+...++++.|+.+|++..+.+|. +...+|.++...++..+|+.++.+++..+|.+ ...+...+..+...++++.
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHH
Confidence 3344456777777777777776654 44556777777777777777777777777777 6666677777777777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Q 001509 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1065)
Q Consensus 216 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 261 (1065)
|+...++++...|.+...|..|+.+|...|+ ++.|+..++.+-
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcCc
Confidence 7777777777777777777777777777777 777777766543
No 194
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.44 E-value=0.0066 Score=68.22 Aligned_cols=188 Identities=15% Similarity=0.171 Sum_probs=132.1
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCChHHHHH
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSM 575 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 575 (1065)
..+.....|......-...|+++...-.|++++--...+...|++.+......|+..-|...+..+.++. |..+.+...
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 3444566777777778899999999999999999999999999999999999999999999999988875 777888888
Q ss_pred hhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHH---HHHHHHHhhCCcch
Q 001509 576 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK---ELYTRVIVQHTSNL 652 (1065)
Q Consensus 576 l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~---~~~~~~l~~~p~~~ 652 (1065)
.+.+--..|++..|..+++++.+..|. -..+-+.-.++ -... |..+.+. .++.....- ..+.
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg-~v~~~l~~~~~-e~r~------------~~~~~~~~~~~l~s~~~~~-~~~~ 436 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPG-LVEVVLRKINW-ERRK------------GNLEDANYKNELYSSIYEG-KENN 436 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCc-hhhhHHHHHhH-HHHh------------cchhhhhHHHHHHHHhccc-ccCc
Confidence 888888899999999999999988754 22222222223 2222 5555555 233222221 1122
Q ss_pred H----HHhHHHHH-HHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHc
Q 001509 653 Y----AANGAGVV-LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 704 (1065)
Q Consensus 653 ~----a~~~la~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~ 704 (1065)
. .+...+.. +.-.++.+.|..++.++.+..| .+-..|..+.++...+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~-----~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILP-----DCKVLYLELIRFELIQ 488 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC-----ccHHHHHHHHHHHHhC
Confidence 2 22223332 2345788888888888888876 5555666665555443
No 195
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.40 E-value=0.0082 Score=67.76 Aligned_cols=225 Identities=19% Similarity=0.149 Sum_probs=124.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH------HHHh----CCCCHH-HHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQR------ALQL----DPENVE-ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~------al~~----~p~~~~-a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
-..|.+|.+..++++|+++|.+ ++++ .|..+. .-...|.-+...|+ ++.|+..|-.+--
T Consensus 665 dkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q---~daainhfiea~~------- 734 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ---LDAAINHFIEANC------- 734 (1636)
T ss_pred HhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh---HHHHHHHHHHhhh-------
Confidence 3445666666777777777654 2222 122111 11122333334444 6666666544321
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHH
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1065)
+..-........+|.+|+.+++.+-.. ......|-.++.-|...|+|+-|..+|.++-. ...-.
T Consensus 735 -~~kaieaai~akew~kai~ildniqdq----k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~-----------~~dai 798 (1636)
T KOG3616|consen 735 -LIKAIEAAIGAKEWKKAISILDNIQDQ----KTASGYYGEIADHYANKGDFEIAEELFTEADL-----------FKDAI 798 (1636)
T ss_pred -HHHHHHHHhhhhhhhhhHhHHHHhhhh----ccccccchHHHHHhccchhHHHHHHHHHhcch-----------hHHHH
Confidence 122233344456666666666554322 22334556677788888888888888866532 22334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHH------HHHH---hCCCcHHHHHHHHHc
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLR------KAAK---IDPRDAQARTLLKKA 419 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~------~al~---~~p~~~~a~~~l~~~ 419 (1065)
.+|-+.|++..|..+-+++.. |.. ...|...+.-+-..|+|.+|.++|- +++. ...-+.+...+..+.
T Consensus 799 ~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh
Confidence 667778888888777766543 222 3344445555555566555554442 1111 112222333444444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
....-.++...+|.-+...|+...|...|-++-.
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 3444457788889999999999999988877643
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.39 E-value=7e-06 Score=74.12 Aligned_cols=99 Identities=22% Similarity=0.191 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHH
Q 001509 426 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 505 (1065)
Q Consensus 426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1065)
.+++++|+++-..|+.++|+.+|++++..+. ..+....++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL----------------------------------------~~~~~~~a~ 41 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL----------------------------------------SGADRRRAL 41 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------------------------CchHHHHHH
Confidence 4678889999999999999999999987432 233456788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 506 FNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALK 564 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 564 (1065)
+.+|.++..+|++++|+.+++..+..+|+ +......++.++...|++++|+.++-.++.
T Consensus 42 i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 42 IQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999988887 667777788888899999999888877665
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.38 E-value=5.7e-06 Score=74.70 Aligned_cols=99 Identities=26% Similarity=0.261 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 001509 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (1065)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (1065)
.+++.+|.++...|+.++|+.+|++++......+....+++.+|.++...|++++|+.++++.+..+|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 567888889999999999999999998754344555678888999999999999999999999988888 77788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 001509 383 GHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~al~ 404 (1065)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999988877664
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00011 Score=72.58 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH----HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART----LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 451 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (1065)
...|...-.++.+...+++|..-+...-.++..+..... .-.+.|..+|+..-...+.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 455555566666666666666665554444322211000 0013355566666666677777888888777666554
Q ss_pred HcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001509 452 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 531 (1065)
Q Consensus 452 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 531 (1065)
.. ....+...+......+..+..+++-+
T Consensus 149 ~~--------------------------------------------------~V~~ii~~~e~~~~~ESsv~lW~KRl-- 176 (366)
T KOG2796|consen 149 KT--------------------------------------------------VVSKILANLEQGLAEESSIRLWRKRL-- 176 (366)
T ss_pred HH--------------------------------------------------HHHHHHHHHHhccchhhHHHHHHHHH--
Confidence 32 11111222222233344455554432
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCC-----CCh
Q 001509 532 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDS 605 (1065)
Q Consensus 532 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~d~ 605 (1065)
..+.+.++.++.-.|.|.-.+..++++++.+ |..+.....+|.+.++.|+.+.|..+|+.+-+.... ...
T Consensus 177 ----~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 177 ----GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred ----HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence 3355566677777778888888888888877 566777778888888888888888888754432111 122
Q ss_pred HHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Q 001509 606 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS 685 (1065)
Q Consensus 606 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 685 (1065)
....+.+.+ |.-+ +++..|...|.+++..+|.++.+.++.|.++.-.|+...|+..++.+.+..|+.
T Consensus 253 ~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 253 MVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 334445555 6666 899999999999999999999999999999999999999999999999999865
Q ss_pred CCCcchHHHHHHHHHH
Q 001509 686 VFVQMPDVWINLAHVY 701 (1065)
Q Consensus 686 ~~~~~~~~~~~lg~~~ 701 (1065)
.. +..+.+||-.+|
T Consensus 320 ~l--~es~~~nL~tmy 333 (366)
T KOG2796|consen 320 YL--HESVLFNLTTMY 333 (366)
T ss_pred ch--hhhHHHHHHHHH
Confidence 32 334555655443
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.30 E-value=1.8e-06 Score=70.34 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
..|++++|+..|++++..+|++..+++.+|.+++..|++++|..++.+++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444444444444444444444444444444444444444444444443
No 200
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.02 Score=67.44 Aligned_cols=255 Identities=17% Similarity=0.169 Sum_probs=151.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCH
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1065)
.|.+....+-|++|...|++. .-+..+...+ .-..++.+.|..+..++ +.+.+|..+|.+..+.|..
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCch
Confidence 355556666677777777653 1122222221 22345556665555443 1256778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1065)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1065)
.+|+..|-++ +++..+.....+....|. |++-+.++..+.+.. ..+.+-..|..+|...++..+...+..
T Consensus 1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhc-
Confidence 8888777664 355566666666677776 777777776665432 222333444555555665555444331
Q ss_pred HHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1065)
Q Consensus 294 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1065)
.|+. .-....|.-++..|.|+.|.-+|...-. |-.++..+..+|+|..|+..-+++
T Consensus 1191 -------gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~AVD~aRKA----- 1246 (1666)
T KOG0985|consen 1191 -------GPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGEYQGAVDAARKA----- 1246 (1666)
T ss_pred -------CCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHhhhc-----
Confidence 1222 2234567777777778777776655432 556777777888888887777765
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
++..+|...+..+...+.+.-|.-+=-.. .+.++-+-.+...|...|-|++-+.+++.++.
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQiCGL~i-------------------ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQICGLNI-------------------IVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHHhcCceE-------------------EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 34566777666666665554443221100 01123355667788888999998888888876
Q ss_pred c
Q 001509 454 D 454 (1065)
Q Consensus 454 ~ 454 (1065)
+
T Consensus 1308 L 1308 (1666)
T KOG0985|consen 1308 L 1308 (1666)
T ss_pred h
Confidence 3
No 201
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=9.3e-06 Score=76.68 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=47.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1065)
-|.-++..|+|++|...|..+|...|..+ ..+.+.|.++++++.+..|+..+.+++.++|.. ..++...+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHH
Confidence 35555555555555555555555554331 233444444444555555555555555555544 333444444444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 209 KLGQLGKARQAFQRALQLDPENVE 232 (1065)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~ 232 (1065)
++..|+.|+..|.++++.+|....
T Consensus 180 k~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHH
Confidence 444455555555555554444433
No 202
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=1.9e-05 Score=87.08 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=87.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHh
Q 001509 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1065)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1065)
.++...++++.|+.+|++....+|+. ...++.++...++-.+|+..+.+++...|.+...+...+.+++..++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--- 249 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--- 249 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---
Confidence 34444567777777777777777653 44567777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1065)
++.|+...+++....|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777777777777777777777777777777777777777666644
No 203
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.27 E-value=1.3e-06 Score=88.82 Aligned_cols=229 Identities=10% Similarity=0.041 Sum_probs=145.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
|+|.|++|+.+|.+++..+|.++..+.+++.+|+....|..|...|..++.++.....+|...+.+-...|...+|...+
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~ 188 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDC 188 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhH
Confidence 45556699999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1065)
+.+|.+.|++ ..+.-.++. .....++ +-+.+.-|....+........- ...|
T Consensus 189 E~vL~LEP~~-~ELkK~~a~----i~Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~-------------------~K~~ 240 (536)
T KOG4648|consen 189 ETVLALEPKN-IELKKSLAR----INSLRER----KIATKSTPGFTPARQGMIQILP-------------------IKKP 240 (536)
T ss_pred HHHHhhCccc-HHHHHHHHH----hcchHhh----hHHhhcCCCCCccccchhhhcc-------------------ccCc
Confidence 9999999998 443332222 2221111 1122223332222222222110 0111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 001509 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1065)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1065)
|..++..|.+..++..+..-+...+.+. ..-.. +..|...-+++.++.-..+++. ..+......
T Consensus 241 ---------G~~Fsk~~~~~~~i~~~~~~~A~~~~~~---~L~~~-~~~~~KI~~~~~~~~~~~~~~~---~~~s~~~~~ 304 (536)
T KOG4648|consen 241 ---------GYKFSKKAMRSVPVVDVVSPRATIDDSN---QLRIS-DEDIDKIFNSNCGIIEEVKKTN---PKPTPMPDT 304 (536)
T ss_pred ---------chhhhhhhccccceeEeeccccccCccc---cCccc-HHHHHHHhhcchhHHHHHHhcC---CCCCcCccc
Confidence 2233333444433333332222211110 01111 4555666667777666655543 334444444
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 378 (1065)
.+.+..-.-.|...++...++.++.+.|.+-..
T Consensus 305 s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~ 337 (536)
T KOG4648|consen 305 SGPPKAETIAKTSKEVKPTKQTAVKVAPAVETP 337 (536)
T ss_pred CCCchhHHHHhhhhhcCcchhheeeeccccccc
Confidence 555555566677888888888888888876433
No 204
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.27 E-value=0.027 Score=68.02 Aligned_cols=479 Identities=14% Similarity=0.078 Sum_probs=252.0
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHHHcCCH
Q 001509 250 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGP---TKSHSYYNLARSYHSKGDY 321 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~ 321 (1065)
+..|+.+++-+++..+- ...+.+.+|.+++ ...+++.|...+.+++.....+. ....+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44566666666642221 2345666777766 57778888888887776554311 1234556778888888877
Q ss_pred HHHHHHHHHHHHhcCCCCCchhh-hhh-H-HHHHHHcCCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCH
Q 001509 322 EKAGLYYMASVKEINKPHEFIFP-YYG-L-GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (1065)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~-~~~-l-a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (1065)
. |+..+.+.+......+..... .+. + ...+...+++..|+..++.+.... +.++. +....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 999999988765432222111 111 2 333334489999999999988764 34433 333346666677878
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHc---ccc----hhhhccc
Q 001509 393 EKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNI--GVIHFEKGEFESAHQSFKDALG---DGI----WLTLLDS 463 (1065)
Q Consensus 393 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~---~~~----~~~~~~~ 463 (1065)
+.+++.++++........ +..........+|..+ -.++...|++..+...++..-. ... |.. ..+
T Consensus 196 ~d~~~~l~~~~~~~~~~q-----~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~-~~~ 269 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQ-----LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPS-WDE 269 (608)
T ss_pred hhHHHHHHHHHHHHhhcc-----cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCC-cCC
Confidence 888888887754321110 0000000001223222 2345667887777766655432 111 000 000
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhcc-cC--CCCcC-CCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----
Q 001509 464 KTKTYVIDASASMLQFKDMQLFHRFE-ND--GNHVE-LPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKY----- 532 (1065)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~--~~~~~-~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 532 (1065)
.....+.. ..... .. ...+. .+.. ..-+++--|.+....+..+.|.+++.+++..-
T Consensus 270 -d~~i~l~~------------~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~ 336 (608)
T PF10345_consen 270 -DGSIPLNI------------GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKI 336 (608)
T ss_pred -CeeEEeec------------ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhc
Confidence 00000000 00000 00 00000 1111 22233334555566677778888888877521
Q ss_pred --CCh-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CC------ChHHHHHhhhhhcc
Q 001509 533 --QDY-------------------VDAYLRLAAIAKARNNLQLSIELVNEALKVN---GK------YPNALSMLGDLELK 582 (1065)
Q Consensus 533 --p~~-------------------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~l~~~~~~ 582 (1065)
+.. ....+..+.+..-.+++..|...+..+.... |. .+.+++..|..+..
T Consensus 337 ~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~ 416 (608)
T PF10345_consen 337 KSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQS 416 (608)
T ss_pred cCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHH
Confidence 100 1134555667778899999999988877653 22 36788999999999
Q ss_pred ccchHHHHHHHH--------HhhhcCCCCChHHHH--hhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc-c
Q 001509 583 NDDWVKAKETFR--------AASDATDGKDSYATL--SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-N 651 (1065)
Q Consensus 583 ~g~~~~A~~~~~--------~al~~~~~~d~~~~~--~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~ 651 (1065)
.|+.+.|..+|. .+....+..+.+.+. ++..+ +... ..... ...+........+......|+ +
T Consensus 417 ~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I-~~~~---~~~~~--~~~~~~~l~~~i~p~~~~~~~~~ 490 (608)
T PF10345_consen 417 TGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAII-LQYE---SSRDD--SESELNELLEQIEPLCSNSPNSY 490 (608)
T ss_pred cCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHH-hHhh---cccch--hhhHHHHHHHhcCccccCCccHH
Confidence 999999999998 333344443433322 22222 2221 11000 000122333333333333332 2
Q ss_pred hHHHhHH-HHHHH--hcCCcHHHHHHHHHHHHHh-cC-CCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 652 LYAANGA-GVVLA--EKGQFDVSKDLFTQVQEAA-SG-SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 652 ~~a~~~l-a~~~~--~~g~~~~A~~~~~~~~~~~-p~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
...++.+ ..++. ..-...++...+...++.. .. +...-..-++..+|+.++ .|+..+.......++......++
T Consensus 491 ~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d 569 (608)
T PF10345_consen 491 NRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSD 569 (608)
T ss_pred HHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhh
Confidence 2222222 22222 2223457777777777665 21 111112234556677777 78888888887777765444433
Q ss_pred --HHHHH-----HHHHHHHHhhcHHHHHHHHHHHHH
Q 001509 727 --AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 755 (1065)
Q Consensus 727 --~~~~~-----~lg~~~~~~g~~~~A~~~~~kal~ 755 (1065)
..+|. .+...+...|+.++|.....+.-.
T Consensus 570 ~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 570 YSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 23332 345557778999999888776644
No 205
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=2.5e-06 Score=69.57 Aligned_cols=65 Identities=34% Similarity=0.565 Sum_probs=36.0
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
+..|+|++|+..|++++..+|++ ..+++.+|.|++..|++++|...+.+++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555555555555555555555 445555555555555555555555555555555555444444
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=6.2e-06 Score=68.34 Aligned_cols=62 Identities=29% Similarity=0.589 Sum_probs=30.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001509 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1065)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1065)
+++..++|+.|+.++++++..+|++ ...++..|.|+..+|++..|+..|+++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4444455555555555555555544 3444445555555555555555555555555544443
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.22 E-value=0.014 Score=62.98 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 180 (1065)
|.+++.+|...|.++......++ ..+-++....+-.++.+.-...+...-+..|..+...+..|...++.|.|..
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK 97 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence 35566699999999876655443 3444555666677888887777777778889888899999999999999999
Q ss_pred HHHHHHHHHHhCCCCc------------h--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 181 SLEFYKRALQVHPSCP------------G--AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1065)
Q Consensus 181 Al~~~~~al~~~p~~~------------~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1065)
|++.+..-...-.... . ..-...+.|+...|.+.+++..+.+.+..
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9998876554411110 1 11234689999999999999999988764
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.20 E-value=6.1e-06 Score=69.39 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=55.9
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC----c-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q 001509 689 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----D-AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757 (1065)
Q Consensus 689 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~ 757 (1065)
+...++.++|.+|..+|++++|+.+|++++....... . ..++..+|.++...|++++|+.++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4567889999999999999999999999997642222 1 6788899999999999999999999998763
No 209
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=2.5e-05 Score=73.90 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
+-.-|.-+|..|+|.+|..-|..+|.+.|..+ ..++.+.|.|+++++.++.|+....++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 33446667778888888888888888777763 33455677778888888888888888888888877777777777
Q ss_pred HHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1065)
|.+... +++|+..|.+++..+|....+.-..+.+--.
T Consensus 178 yek~ek---~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 178 YEKMEK---YEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHhhhh---HHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 777766 7888888888888888777666665554433
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.19 E-value=0.00013 Score=68.41 Aligned_cols=140 Identities=18% Similarity=0.193 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
.+.+|.+.+ .+.|. ....+.+|..+...|++.+|...|++++. ..-.++..++++|...+..+++..|...++.
T Consensus 75 ~~Rea~~~~----~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 75 HLREATEEL----AIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred HHHHHHHHH----hhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 344454444 44453 44678899999999999999999999986 3557789999999999999999999999999
Q ss_pred HHHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHH
Q 001509 188 ALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1065)
Q Consensus 188 al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 257 (1065)
+.+.+|.. .+...+.+|..+..+|.+.+|...|+.++...| .+.+....+..+..+|+ ..++-..+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr---~~ea~aq~ 216 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGR---LREANAQY 216 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcc---hhHHHHHH
Confidence 99999876 456788899999999999999999999999888 46777788888888886 44444333
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.16 E-value=9.9e-06 Score=67.11 Aligned_cols=61 Identities=33% Similarity=0.462 Sum_probs=53.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
..+|+..++++.|+.+++.++..+|.++..++.+|.+++..|++.+|+..|++++...|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4678888899999999999999999988889999999999999999999999999888887
No 212
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00083 Score=65.64 Aligned_cols=194 Identities=15% Similarity=0.109 Sum_probs=121.3
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCChHHHHHhhhhhccccchH
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGDLELKNDDWV 587 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~ 587 (1065)
-.+++++|.++|.++ +.+|....++..|-..|-++-... .+....|.-.+.+|.+ .+..
T Consensus 26 g~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPE 90 (288)
T ss_pred CCcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChH
Confidence 345778888777766 333444444444444444443321 0112334444555433 4777
Q ss_pred HHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHh-cC
Q 001509 588 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KG 666 (1065)
Q Consensus 588 ~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g 666 (1065)
+|..++++++++ |... |++..|.... ..||.+|.. ..
T Consensus 91 eAv~cL~~aieI----------------yt~~------------Grf~~aAk~~--------------~~iaEiyEsdl~ 128 (288)
T KOG1586|consen 91 EAVNCLEKAIEI----------------YTDM------------GRFTMAAKHH--------------IEIAEIYESDLQ 128 (288)
T ss_pred HHHHHHHHHHHH----------------HHhh------------hHHHHHHhhh--------------hhHHHHHhhhHH
Confidence 777777776654 4444 5555444432 345666653 36
Q ss_pred CcHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHh
Q 001509 667 QFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEA 740 (1065)
Q Consensus 667 ~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~lg~~~~~~ 740 (1065)
+++.|+..|+++-+-..+.... ..-.+++..+..-...++|.+|+..|+++....-+++- ...++..|.|++-.
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 7888888888888776542111 12235666677777889999999999998875333321 44566778888888
Q ss_pred hcHHHHHHHHHHHHHhCCCCcchH
Q 001509 741 EQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 741 g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
.+.-.+...+++-..++|.....+
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccH
Confidence 999999999999999999876554
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.13 E-value=0.00013 Score=64.12 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=88.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHH
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la~~~ 207 (1065)
+-..|..+...|+.+.|++.|.+++...|.++.+|.+.|..+.-+|+..+|+..+++++.+.... ...++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34568888999999999999999999999999999999999999999999999999999986443 234678899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 001509 208 YKLGQLGKARQAFQRALQLDPE 229 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (1065)
..+|+.+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887653
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.00057 Score=64.20 Aligned_cols=147 Identities=15% Similarity=0.129 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHh
Q 001509 552 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 631 (1065)
Q Consensus 552 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~ 631 (1065)
++....-..+.+.+.|.. .-.+.|+......|++.+|...|.+++.-.-..|...++.+++. .+..
T Consensus 72 P~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A-qfa~------------ 137 (251)
T COG4700 72 PERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA-QFAI------------ 137 (251)
T ss_pred hhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH-HHhh------------
Confidence 333333344444444432 23344566666666666666666666554333455555555555 4444
Q ss_pred hhHHHHHHHHHHHHhhCCc--chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHH
Q 001509 632 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 709 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 709 (1065)
+++..|...++++.+.+|. .+.....+|.+|...|.+..|...|+.++...| .+......+..+.++|+..+
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHHHHHHHHHhcchhH
Confidence 5555555566555555554 344445555555556666666666666655554 34455555555555555555
Q ss_pred HHHHHHHHH
Q 001509 710 AMKMYQNCL 718 (1065)
Q Consensus 710 A~~~~~~al 718 (1065)
|...|....
T Consensus 212 a~aq~~~v~ 220 (251)
T COG4700 212 ANAQYVAVV 220 (251)
T ss_pred HHHHHHHHH
Confidence 555544443
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0012 Score=65.65 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCch
Q 001509 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEI 71 (1065)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~ 71 (1065)
..+.+|...-.++.+...+++|.--|+..-..+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~ 100 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQ 100 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCC
Confidence 3466787777788888888888877776654443
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.05 E-value=7.8e-06 Score=68.76 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=61.0
Q ss_pred CCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 001509 648 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 721 (1065)
Q Consensus 648 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 721 (1065)
+|.-..+++++|.+|...|++++|+..|+++++... ++..+....++.++|.+|..+|++++|+.+|+++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 355667899999999999999999999999998742 22222346789999999999999999999999999874
No 217
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.04 E-value=0.073 Score=64.29 Aligned_cols=414 Identities=17% Similarity=0.124 Sum_probs=242.8
Q ss_pred HHHHHHHHHhccCCC-CCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCCCchh----hhhhHHHHHHHcCCHHH
Q 001509 287 VEQLTETALAVTNHG-PTKSHSYYNLARSYH-SKGDYEKAGLYYMASVKEINKPHEFIF----PYYGLGQVQLKLGDFRS 360 (1065)
Q Consensus 287 A~~~~~~al~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~la~~~~~~g~~~~ 360 (1065)
|++.++.++...+.. ...+.+++.+|.+++ ...+++.|..++.+++..... +.... +.+.++.++.+.+...
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 566777776433322 245677889999887 789999999999999875543 44332 3455788888888777
Q ss_pred HHHHHHHHHHhCCC---cH-H-HHHHH-HHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHcCCCCCHHHHHHHH
Q 001509 361 ALTNFEKVLEIYPD---NC-E-TLKAL-GHIYVQLGQIEKAQELLRKAAKID--PRDAQARTLLKKAGEEVPIEVLNNIG 432 (1065)
Q Consensus 361 A~~~~~~~l~~~p~---~~-~-~~~~l-a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~~~~~~~~la 432 (1065)
|...+.+.++.... .. . ++..+ ...+...+++..|+..++...... +.++.+.. -+....+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v-----------~~~l~~~ 186 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV-----------LASLSEA 186 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH-----------HHHHHHH
Confidence 99999999886443 21 1 12222 333333479999999999988765 34443322 1334446
Q ss_pred HHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHH--
Q 001509 433 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR-- 510 (1065)
Q Consensus 433 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~-- 510 (1065)
.++...+....+++.++.+....... .. ... ..+....++..+-.
T Consensus 187 ~l~l~~~~~~d~~~~l~~~~~~~~~~-q~------------------------------~~~--~~~~qL~~~~lll~l~ 233 (608)
T PF10345_consen 187 LLHLRRGSPDDVLELLQRAIAQARSL-QL------------------------------DPS--VHIPQLKALFLLLDLC 233 (608)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHhhc-cc------------------------------CCC--CCcHHHHHHHHHHHHH
Confidence 77778888888999888886522100 00 000 11223334444333
Q ss_pred HHHHcCChHHHHHHHHHHH---H---HCC---C---------------------h------------HHHHHHHHHHHHH
Q 001509 511 LLEQIHDTVAASVLYRLIL---F---KYQ---D---------------------Y------------VDAYLRLAAIAKA 548 (1065)
Q Consensus 511 ~~~~~g~~~~A~~~~~~al---~---~~p---~---------------------~------------~~a~~~la~~~~~ 548 (1065)
++...|++..+...++.+- . ..| . . .-+|+.-|.....
T Consensus 234 ~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~ 313 (608)
T PF10345_consen 234 CSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLY 313 (608)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhh
Confidence 3455677666665544432 2 111 0 0 1134444555666
Q ss_pred cCCHHHHHHHHHHHHHHCCC-------C-------------------hHHHHHhhhhhccccchHHHHHHHHHhhhcCC-
Q 001509 549 RNNLQLSIELVNEALKVNGK-------Y-------------------PNALSMLGDLELKNDDWVKAKETFRAASDATD- 601 (1065)
Q Consensus 549 ~g~~~~A~~~~~~al~~~p~-------~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~- 601 (1065)
.+..+.|.+++.+++..-.+ . ..+....+++.+-.++|..|......+.....
T Consensus 314 ~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~ 393 (608)
T PF10345_consen 314 KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQR 393 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 77777888888887764211 0 01344677777888999999998887776321
Q ss_pred --C-----CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHH--------HHHhhCCc---chHHHhHHHHHHH
Q 001509 602 --G-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHTS---NLYAANGAGVVLA 663 (1065)
Q Consensus 602 --~-----~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~l~~~p~---~~~a~~~la~~~~ 663 (1065)
. ..+..++..|-. +... |+.+.|...|. .+....+. .+.+..++..++.
T Consensus 394 ~~~~~~~~~~~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 394 SPSKLYESLYPLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred CccchhhhhhHHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 1 234455555554 5555 99999999998 44455555 3556677778877
Q ss_pred hcCCcHH----HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHh-cCCCc----HHHHHH
Q 001509 664 EKGQFDV----SKDLFTQVQEAASGSVFVQMPDVWINLAHVYF--AQGNFALAMKMYQNCLRKF-YYNTD----AQILLY 732 (1065)
Q Consensus 664 ~~g~~~~----A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~-~~~~~----~~~~~~ 732 (1065)
..+.-.. +..++..+-.....+........+..+-.++. ..-...++...+..+++.. ....+ .-++..
T Consensus 461 ~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l 540 (608)
T PF10345_consen 461 YESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL 540 (608)
T ss_pred hhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 6665443 44444443332221111111112222222221 2234458888888888876 22222 445667
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 733 LARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 733 lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
++..++ .|+..+.......+++..+..
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence 777777 788777666665566655443
No 218
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.00 E-value=0.00026 Score=77.58 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=85.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1065)
++..+++.+|.+...+..-+..+..+|+..+|..++..++-..|.. -.+++.+|.++.+.|...+|--++..|+.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3444556666655555555555566788888888888888776654 35678888888888888888777777776666
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
.. ...++.+|.++..+|.+......|..+.+.+|....+.
T Consensus 281 ~~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 281 FF-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred cc-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 65 44477788888888888888888888888888755443
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.97 E-value=0.042 Score=59.19 Aligned_cols=288 Identities=12% Similarity=0.072 Sum_probs=158.1
Q ss_pred cCCCCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001509 18 ALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLG 97 (1065)
Q Consensus 18 ~~~~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g 97 (1065)
--+.+|.|...+.+-++..|.+...|+++...|-.+|.+++-..+++++..+-+ ++ .-+|.....|
T Consensus 20 ~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~------------~~aw~ly~s~ 85 (660)
T COG5107 20 PSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IM------------EHAWRLYMSG 85 (660)
T ss_pred cccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--cc------------cHHHHHHhcc
Confidence 458899999999999999999999999999999999999999999999977632 11 2355555566
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc------C----CHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK------G----EVEQASSAFKIVLEADRDNVPALLG 167 (1065)
Q Consensus 98 ~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~------g----~~~~A~~~~~~al~~~p~~~~a~~~ 167 (1065)
.+. ..+|.....+|.+++...- +.+.|...- -|.+. | .+-+|-++.-.++-.+|.....|-.
T Consensus 86 ELA------~~df~svE~lf~rCL~k~l-~ldLW~lYl-~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~e 157 (660)
T COG5107 86 ELA------RKDFRSVESLFGRCLKKSL-NLDLWMLYL-EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDE 157 (660)
T ss_pred hhh------hhhHHHHHHHHHHHHhhhc-cHhHHHHHH-HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHH
Confidence 555 4467777777777775543 244444322 22222 1 1233333333333356776666666
Q ss_pred HHHHHHH---------cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---------HcC----CHHHHHHHHHHHHH
Q 001509 168 QACVEFN---------RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---------KLG----QLGKARQAFQRALQ 225 (1065)
Q Consensus 168 la~~~~~---------~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~---------~~g----~~~~A~~~~~~al~ 225 (1065)
.+..+.. +.+.+.-...|.+++..--.+....|...-..-. -.| -|-.|...|+....
T Consensus 158 y~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~n 237 (660)
T COG5107 158 YGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQN 237 (660)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 5554432 3344556667777776544442222221111111 111 24455566655544
Q ss_pred h-------CCCCHH-----------HHHHHHHHHHHccc---hHhHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001509 226 L-------DPENVE-----------ALVALAVMDLQANE---AAGIR-KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1065)
Q Consensus 226 ~-------~p~~~~-----------a~~~la~~~~~~~~---~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1065)
+ +|.+.. -|.+........+- .+-.. .---.+++++...|-.+.+|+.....+...++
T Consensus 238 lt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd 317 (660)
T COG5107 238 LTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISD 317 (660)
T ss_pred HhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccH
Confidence 3 222111 12222222221110 00011 22234555666666666666666666666666
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1065)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1065)
-+.|+.....++... +.....++.+|...++-+.-..+|+++..
T Consensus 318 ~q~al~tv~rg~~~s------psL~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 318 KQKALKTVERGIEMS------PSLTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHhcccCC------CchheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 666666665554332 23445555555555555555555555543
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.97 E-value=3e-05 Score=84.56 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=49.0
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001509 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
.+|+++.+|+++|.+|+..|+|++|+..|++++.++|++..+ |+++|++|..+|++++|+.+|++++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667777777777777777777777777777777776643 777777777777777777777777765
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.97 E-value=0.042 Score=59.16 Aligned_cols=147 Identities=10% Similarity=0.008 Sum_probs=99.8
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
-+..-++-+|++...|+.+...+-.+|.+++-.+.+.+...-.|--+.+|...-..-...++|.....+|.++|...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45566788999999999999999999999999999999998888888888777777777889999999999998866553
Q ss_pred chHHHHHHHHHHHHcC-----C----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc------hHhHHHHHHHHHHH
Q 001509 196 PGAIRLGIGLCRYKLG-----Q----LGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 260 (1065)
Q Consensus 196 ~~~~~~~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~a 260 (1065)
+.|...-..-.+.+ + .-+|.+..-.+.-.+|.....|...+..+..... ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 33332222111221 1 2233333333344577777777777766544322 12355556666776
Q ss_pred HHhC
Q 001509 261 FEIY 264 (1065)
Q Consensus 261 l~~~ 264 (1065)
+...
T Consensus 188 l~tP 191 (660)
T COG5107 188 LQTP 191 (660)
T ss_pred HcCc
Confidence 6544
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.94 E-value=0.05 Score=58.93 Aligned_cols=145 Identities=7% Similarity=-0.041 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch--hhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001509 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1065)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1065)
.+..-|-++..++++.+|...|.++.+.....|... .++.++....+-.++.+.-...+...-+..|..+......|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344567788889999999999988887554433322 233333344445566666666666666778888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 385 IYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK-KAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 385 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~-~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
+.++.+.+.+|+..+..-...-...... .+. +.....+. -.-+..+.+++..|.+.++...+++.+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~--~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESP--WLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccc--hhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9999999999998887554431111000 000 00001111 2224457788999999999999998875
No 223
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.062 Score=59.07 Aligned_cols=96 Identities=15% Similarity=0.247 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 001509 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRAL 224 (1065)
Q Consensus 146 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 224 (1065)
.-...|+.++...+.++..|........+.+.+.+--.+|.+++..+|++ +.+|+..|.-.+.-+. ++.|...|.+++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-PDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-chhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34556777777777778888777777777777888888888888888888 6667776666666554 788888888888
Q ss_pred HhCCCCHHHHHHHHHHHH
Q 001509 225 QLDPENVEALVALAVMDL 242 (1065)
Q Consensus 225 ~~~p~~~~a~~~la~~~~ 242 (1065)
+.+|+++..|...-.+.+
T Consensus 168 R~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred hcCCCChHHHHHHHHHHH
Confidence 888888877665554443
No 224
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.89 E-value=0.00011 Score=69.45 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFN 174 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 174 (1065)
.|+.|.+.++.....+|.+++.++..|.+++...+ +++|+.-|+.+|.++|+...+++.+|.++..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 46677777777777777777777777766665533 2334444444444555555555555544443
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.87 E-value=5.9e-05 Score=82.28 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=65.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1065)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1065)
.+|+++.+++++|.+|+..|+|++|+..|++++.++|++.. .+|+++|.||..+|++++|+.+|++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999832 469999999999999999999999999973
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.85 E-value=0.043 Score=63.40 Aligned_cols=168 Identities=20% Similarity=0.154 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhh------hhhHHHHHH----HcCCHHHHHHHHHHHHHhCCCcH
Q 001509 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP------YYGLGQVQL----KLGDFRSALTNFEKVLEIYPDNC 376 (1065)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~la~~~~----~~g~~~~A~~~~~~~l~~~p~~~ 376 (1065)
....+..+.--.|+-+.++..+..+.+..+ -..+.+ |+....... .......|..++......+|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~--i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSEN--IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCC--cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH
Confidence 444444555556888888888888775211 111111 111111111 24567889999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccc
Q 001509 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 456 (1065)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 456 (1065)
-.++..|.++...|+.++|+..|++++.......+.. .-+++.+++++..+++|++|..+|....+.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~-----------~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLH-----------HLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHH-----------HHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999885443333222 24688999999999999999999999987543
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCCh-------HHHHHHHHHHH
Q 001509 457 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT-------VAASVLYRLIL 529 (1065)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al 529 (1065)
| ......|..|.++...|+. ++|..++.++-
T Consensus 337 W------------------------------------------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 337 W------------------------------------------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred c------------------------------------------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3667788889999999988 66666666553
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.84 E-value=0.018 Score=66.45 Aligned_cols=194 Identities=16% Similarity=0.103 Sum_probs=131.8
Q ss_pred HHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHH
Q 001509 556 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 635 (1065)
Q Consensus 556 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 635 (1065)
.-.|+-++.+-|. .+...+..+ --.|+-+.++..+..+.+...-..+.+.+.|-. |+.....--.... ......
T Consensus 177 ~G~f~L~lSlLPp--~~~kll~~v-GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~--y~~~~~~~~~~~~-~~~~~~ 250 (468)
T PF10300_consen 177 FGLFNLVLSLLPP--KVLKLLSFV-GFSGDRELGLRLLWEASKSENIRSPLAALVLLW--YHLVVPSFLGIDG-EDVPLE 250 (468)
T ss_pred HHHHHHHHHhCCH--HHHHHHhhc-CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHH--HHHHHHHHcCCcc-cCCCHH
Confidence 3345555555552 222222222 334899999999999877443334443332222 3322211111000 227788
Q ss_pred HHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 636 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 715 (1065)
Q Consensus 636 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 715 (1065)
.|..++.......|+....++..|.++...|+.++|+..|++++.....-. .-..-+++.+|+++.-+++|.+|...|.
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-QLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-hHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 999999999999999999999999999999999999999998875332100 0123468899999999999999999999
Q ss_pred HHHHHhcCCCc-HHHHHHHHHHHHHhhcH-------HHHHHHHHHHHHhCC
Q 001509 716 NCLRKFYYNTD-AQILLYLARTHYEAEQW-------QDCKKSLLRAIHLAP 758 (1065)
Q Consensus 716 ~al~~~~~~~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~kal~~~P 758 (1065)
.+.+. +.-. .-..|..|.++...|+. ++|...|.++-.+..
T Consensus 330 ~L~~~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 330 RLLKE--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHhc--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99875 2222 55566678889999998 778888877766543
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.79 E-value=0.00051 Score=60.39 Aligned_cols=97 Identities=20% Similarity=0.123 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc--HHHHHHHH
Q 001509 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLA 734 (1065)
Q Consensus 657 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~lg 734 (1065)
.-|..+.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+.++|+.-+.++++..+.... -.++...|
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 346667777888888888888888776 56778888888888888888888888888877544332 55666777
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCC
Q 001509 735 RTHYEAEQWQDCKKSLLRAIHLAP 758 (1065)
Q Consensus 735 ~~~~~~g~~~~A~~~~~kal~~~P 758 (1065)
.+|...|+-+.|+.-|..+-++..
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCC
Confidence 777788888888888877777653
No 229
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.75 E-value=0.0051 Score=67.94 Aligned_cols=118 Identities=14% Similarity=0.013 Sum_probs=89.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 150 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 150 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
+....++..|.+...+..-+..+..+|+..+|+.++..++-..|.. ...+++.+|.++.+.|...+|--++..|+.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3344555666665555555555666799999999999988876654 445678899999999999999888888888777
Q ss_pred CCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHH
Q 001509 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1065)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1065)
.....++.++.++...++ +...+..|..+.+..|.....
T Consensus 281 ~~t~n~y~l~~i~aml~~---~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGE---YNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred cccccceeHHHHHHHHhh---hhhhhhhhhhhhccCcchhHH
Confidence 766668888888888888 778888888888877765433
No 230
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.75 E-value=0.00029 Score=66.67 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC-
Q 001509 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ- 212 (1065)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~- 212 (1065)
|+.|.+.++.....+|.++.+++..|.++..+.+ +++|+.-|+.++.++|+. ..+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999988877633 678999999999999999 7889999999987764
Q ss_pred ----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 213 ----------LGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 213 ----------~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
|++|..+|++++..+|++......|...
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 8899999999999999998887777655
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.74 E-value=0.00064 Score=72.91 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1065)
+|+.......+.+..+.|...|.++.+..+.....|...|.+.+. .++...|..+|+.+++..|.+ ..+|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 455555666666666667777776664444455666666666555 344444777777777766666 555666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH
Q 001509 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1065)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1065)
..|+.+.|..+|++++..-|... ..|.....+....|+ ++....+..++.+..|...
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhhh
Confidence 66777777777777666555433 456666666666666 6666666667766666644
No 232
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.74 E-value=0.0083 Score=71.01 Aligned_cols=279 Identities=22% Similarity=0.212 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHc
Q 001509 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL-----GDFRSALTNFEKVLEI-----YPDNCETLKALGHIYVQL 389 (1065)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~ 389 (1065)
....|..+|+.+.+ ..+..+.+.+|.+|..- .+.+.|+.+|..+... .-..+.+.+.+|.+|.+.
T Consensus 227 ~~~~a~~~~~~~a~-----~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 227 ELSEAFKYYREAAK-----LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQG 301 (552)
T ss_pred hhhHHHHHHHHHHh-----hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcC
Confidence 35667777777765 44556677777777654 5788888888888761 112456788889998885
Q ss_pred C-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcccchhhhc
Q 001509 390 G-----QIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG---EFESAHQSFKDALGDGIWLTLL 461 (1065)
Q Consensus 390 g-----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~ 461 (1065)
. ++..|+.+|.++......+ ..+.+|.++.... ++..|..+|..|...+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~-----------------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G------ 358 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPD-----------------AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG------ 358 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCch-----------------HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC------
Confidence 3 6788999999888776543 4567787777655 5788999999987643
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHc----CChHHHHHHHHHHHHHCCChHH
Q 001509 462 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI----HDTVAASVLYRLILFKYQDYVD 537 (1065)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~ 537 (1065)
...+.+.++.+|..- -+...|..+|.++.... .+.
T Consensus 359 ---------------------------------------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~ 397 (552)
T KOG1550|consen 359 ---------------------------------------HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPS 397 (552)
T ss_pred ---------------------------------------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chh
Confidence 667788888887653 37789999999998877 344
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCh----HHHHHhhhhhcccc----chHHHHHHHHHhhhcCCCCChHHH
Q 001509 538 AYLRLAAIAKAR-NNLQLSIELVNEALKVNGKYP----NALSMLGDLELKND----DWVKAKETFRAASDATDGKDSYAT 608 (1065)
Q Consensus 538 a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~d~~~~ 608 (1065)
+...++.++..- +.+..+.-.+.......-..+ .........+.... +...+...+.++.. ..+..+.
T Consensus 398 A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~g~~~a~ 474 (552)
T KOG1550|consen 398 AAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA---QGNADAI 474 (552)
T ss_pred hHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh---ccCHHHH
Confidence 444444444332 666666555554444332211 11111111122221 34455555555433 3466777
Q ss_pred HhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhc-C--CcHHHHHHHHHHHHHh
Q 001509 609 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK-G--QFDVSKDLFTQVQEAA 682 (1065)
Q Consensus 609 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~-g--~~~~A~~~~~~~~~~~ 682 (1065)
+.||.+ |+..... . .+++.|...|..+.... ..+.+++|.++..- | .+..|..++.++.+..
T Consensus 475 ~~lgd~-y~~g~g~-~-------~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 475 LKLGDY-YYYGLGT-G-------RDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred hhhcce-eeecCCC-C-------CChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 888888 6665222 1 56888888888887777 77888888888742 1 2678888888877655
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0036 Score=64.43 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=131.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhc-CCCCChHHHH--hhHHHHH
Q 001509 540 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATL--SLGNWNY 616 (1065)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~d~~~~~--~lg~~~y 616 (1065)
..-+.+....|++.+|-..+.+++.-.|.+..++...-.+++.+|+...-...+++++.. .+....++++ .++-. .
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L 185 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-L 185 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-H
Confidence 334556778899999999999999999999999999999999999999999999999876 3333333332 12211 3
Q ss_pred HHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 001509 617 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 696 (1065)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 696 (1065)
... |.|.+|.+.-.++++++|.+.++...++.++...|++.++.+...+--..-..+.. -...-|..
T Consensus 186 ~E~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m-lasHNyWH 252 (491)
T KOG2610|consen 186 EEC------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM-LASHNYWH 252 (491)
T ss_pred HHh------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH-HHhhhhHH
Confidence 333 99999999999999999999999999999999999999999988775443221100 11224556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 697 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 697 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
.+.++...+.|+.|+++|..-+-.-....+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 677888889999999999876543223344
No 234
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.69 E-value=0.013 Score=69.41 Aligned_cols=283 Identities=16% Similarity=0.125 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG-- 176 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g-- 176 (1065)
....|..+|+.+... .+..+.+.+|.+++.- .+.+.|+.+|..+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345788888887654 4677778888887754 5899999999999771 1125668889999998853
Q ss_pred ---ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cchHh
Q 001509 177 ---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAG 249 (1065)
Q Consensus 177 ---~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~ 249 (1065)
++..|+.+|.++......+ ..+.+|.|+..-. ++..|..+|..+... .+..+.+.++.++..- |-..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence 6788999999998876544 4688899988766 678999999998764 4788899999887654 33345
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccCCCCCchHHHHHHHH-HHHH----cCCHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAVTNHGPTKSHSYYNLAR-SYHS----KGDYEK 323 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~-~~~~----~g~~~~ 323 (1065)
...|..++.++.... ++.+...++.++... +.+..+...+..........+....+++..-. .... ..+...
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 899999999999888 555555555554443 66666665555444332111111111111111 1111 125566
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHH
Q 001509 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKL----GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQ 396 (1065)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~ 396 (1065)
+...+.++.. .....+...+|.+|..- .++..|...|..+.... ....+++|.++..- ..+..|.
T Consensus 458 ~~~~~~~a~~-----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAA-----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAK 529 (552)
T ss_pred HHHHHHHHHh-----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHH
Confidence 7777776654 45556677788777664 36899999999998876 88899999888754 1278888
Q ss_pred HHHHHHHHhCCC
Q 001509 397 ELLRKAAKIDPR 408 (1065)
Q Consensus 397 ~~~~~al~~~p~ 408 (1065)
.+|.++...+..
T Consensus 530 ~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 530 RYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHhcCch
Confidence 899888876654
No 235
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.14 Score=56.33 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQ 190 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~ 190 (1065)
.-..+|..+....+.++..|.......-+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|..+|.++|+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 557788899988899999999999888888889999999999999999999999999998888876 8999999999999
Q ss_pred hCCCCchHHH
Q 001509 191 VHPSCPGAIR 200 (1065)
Q Consensus 191 ~~p~~~~~~~ 200 (1065)
.+|++ +.+|
T Consensus 169 ~npds-p~Lw 177 (568)
T KOG2396|consen 169 FNPDS-PKLW 177 (568)
T ss_pred cCCCC-hHHH
Confidence 99999 4444
No 236
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.03 Score=55.17 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHc-CChHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH----
Q 001509 503 TVLFNLARLLEQI-HDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---- 571 (1065)
Q Consensus 503 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 571 (1065)
..+..+|.+|..- .++++|+.+|+.+-.-.... -.+++..+......++|..|+..|+++....-+++.
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 3455677777765 88999999999887644322 347788888888999999999999998887665553
Q ss_pred ---HHHHhhhhhccccchHHHHHHHHHhhhcCCC
Q 001509 572 ---ALSMLGDLELKNDDWVKAKETFRAASDATDG 602 (1065)
Q Consensus 572 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 602 (1065)
.++.-|.|++-..+.-.+...+++..+..|.
T Consensus 194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3445677777778877777777777777765
No 237
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.0017 Score=69.72 Aligned_cols=128 Identities=12% Similarity=0.186 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHH
Q 001509 632 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 710 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 710 (1065)
+..+.|..+|.++++..+.....|...|.+-.. .++...|..+|+.+++..| .++.+|......+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 679999999999997666678888888988666 5666779999999999997 7789999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 711 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 711 ~~~~~~al~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..+.
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999998754443 356888888888889999999999999999999865544
No 238
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00022 Score=69.79 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
.++|..|+.+|.+++.++|..+..|..++.++++..+++.+...+.+++.++|+.+.+.+.+|.+......|++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45677899999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 001509 187 RALQVH 192 (1065)
Q Consensus 187 ~al~~~ 192 (1065)
++..+.
T Consensus 103 ra~sl~ 108 (284)
T KOG4642|consen 103 RAYSLL 108 (284)
T ss_pred HHHHHH
Confidence 886553
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.60 E-value=0.0033 Score=68.95 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------CC--
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-----------------------DN-- 161 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~-- 161 (1065)
+.+...-++.-.+|++++|+.+.+|+.++.-. .....+|..+|+++++... .+
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 44555778888999999999999999887532 2345677777777665311 01
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 001509 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAV 239 (1065)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~ 239 (1065)
+.+...+|.+..+.|+.++|++.++.+++.+|.. ...++..+..|+..++.|.++...+.+.=.. -|.+....+.-+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3345778999999999999999999999988763 4668899999999999999999999885433 2555555555554
Q ss_pred HHHHc-cc------------hHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 240 MDLQA-NE------------AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1065)
Q Consensus 240 ~~~~~-~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1065)
+..+. ++ ...-..|++.+.++++.||..|..+..
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 43331 11 111345778899999999988865543
No 240
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00015 Score=70.99 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=69.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 001509 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1065)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1065)
..|..++....|..|+..|.+++.++|.. +..+.+.+.|++++.+++.+.....++++++|+.+.+++.+|...+....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34556666777777777777777777777 56677777777777777777777777777777777777777777777766
Q ss_pred hHhHHHHHHHHHHHHHh
Q 001509 247 AAGIRKGMEKMQRAFEI 263 (1065)
Q Consensus 247 ~~~~~~A~~~~~~al~~ 263 (1065)
+.+|+..+.+++.+
T Consensus 94 ---~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 ---YDEAIKVLQRAYSL 107 (284)
T ss_pred ---ccHHHHHHHHHHHH
Confidence 77777777777554
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.016 Score=57.37 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=24.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDNC------ETLKALGHIYVQLGQIEKAQELLRKAA 403 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al 403 (1065)
.+|...++|++|..++.++.+-+.++. .++-..+.+......+.++..+|+++.
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs 98 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS 98 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444445555555555555554333221 223333444444444555555555443
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.55 E-value=0.0002 Score=52.09 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1065)
|.+|+.+|..|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567788888888888888888888888888888888877764
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.55 E-value=0.0052 Score=67.41 Aligned_cols=191 Identities=18% Similarity=0.206 Sum_probs=123.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHH
Q 001509 541 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 620 (1065)
Q Consensus 541 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~ 620 (1065)
.+..-..+..++..-++..+++++++|+.+.+|..|+.- ...-..+|..+|+++++.... .++.. ...
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~-- 240 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFL-- 240 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhh--
Confidence 334445667788888888999999999998888887763 233467788888887764321 11111 000
Q ss_pred hhhhcChhHHhhhHHHHHHHHHHHHhhCCc--chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 001509 621 RNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 698 (1065)
Q Consensus 621 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg 698 (1065)
....-+-..+...+. .+++...+|.+.-+.|+.++|++.|..+++..|.. ++..++.+|.
T Consensus 241 ---------------~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLi 302 (539)
T PF04184_consen 241 ---------------QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLI 302 (539)
T ss_pred ---------------hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHH
Confidence 000001111111222 24566788999999999999999999999887743 4677999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-hc---------------HHHHHHHHHHHHHhCCCCcc
Q 001509 699 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQ---------------WQDCKKSLLRAIHLAPSNYT 762 (1065)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~-g~---------------~~~A~~~~~kal~~~P~~~~ 762 (1065)
.++..++.|.++...+.+- .....+..+.+.|..+....+. ++ -..|.+.+.+|++.+|.-+.
T Consensus 303 e~LLelq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 303 EALLELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9999999999998887663 2111233455555444433221 11 13477899999999997654
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.0098 Score=61.37 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=123.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCCCchhhhhhHHHHHH
Q 001509 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQL 353 (1065)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~ 353 (1065)
+.+.+-.|++.+|....++.+... |.+..++..--.+++..|+...-...+.+++...+ ..|-+..+.-.++..+.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~---PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDY---PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhC---chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 445566788888877788877653 56666677777788888888888888888876422 33444555556788899
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
..|-|++|.+...++++++|.+..+.+.++.++...|++.++.++..+.-..-.... ++ ..--|...+.
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~----ml-------asHNyWH~Al 255 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW----ML-------ASHNYWHTAL 255 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh----HH-------HhhhhHHHHH
Confidence 999999999999999999999999999999999999999999998876543222111 00 0123556788
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDAL 452 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al 452 (1065)
+++..+.|+.|+.+|..-+
T Consensus 256 ~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 256 FHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhcccchhHHHHHHHHHH
Confidence 8999999999999998765
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.022 Score=56.48 Aligned_cols=209 Identities=14% Similarity=0.129 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC---chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH
Q 001509 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE---FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----PDNCE 377 (1065)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~ 377 (1065)
..|..-+.+|...++|++|..++.++.+-...+.. ...++-..+.+...+..+.++..+|+++...+ |+...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 34445556666666777777766666643322111 12234445555666667777777777776542 33333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccch
Q 001509 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457 (1065)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (1065)
.-...+--....-++++|+++|++++.+...+...+... +.+...+.++.+...+.+|-..+.+-......
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 333333334456688999999999888755444332222 56777788888989998888877765431100
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH----CC
Q 001509 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQ 533 (1065)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p 533 (1065)
....+.....+.....++....+|..|...|+..-++ .|
T Consensus 183 -------------------------------------~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 183 -------------------------------------CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred -------------------------------------HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh
Confidence 0022223344555556666677888888888876542 23
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 534 DYVDAYLRLAAIAKARNNLQLSIELVNE 561 (1065)
Q Consensus 534 ~~~~a~~~la~~~~~~g~~~~A~~~~~~ 561 (1065)
+...+.-+|... +..|+.++..+++..
T Consensus 226 ed~r~lenLL~a-yd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 226 EDSRSLENLLTA-YDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHHHHH-hccCCHHHHHHHHcC
Confidence 444455554433 456777766665543
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.48 E-value=0.014 Score=63.47 Aligned_cols=180 Identities=15% Similarity=0.114 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCChHHHHHhhhhhcc---ccchHHHHHHHHHhhhcCCCCChHHH
Q 001509 536 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 608 (1065)
Q Consensus 536 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~d~~~~ 608 (1065)
++....+-..|....+|+.-+.+.+.+-.+ -++.+.+.+.+|.++.+ .|+.++|+..+..++......++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445566666777788888877777776665 35566777778888777 78888888888887776666777788
Q ss_pred HhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHH-HHh-----
Q 001509 609 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ-EAA----- 682 (1065)
Q Consensus 609 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~-~~~----- 682 (1065)
..+|.+ |-......... .....++|+..|.++...+| +.+.-.+++.++...|.-.+...-+.++. ...
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 888888 76663321110 11558999999999999995 45556667777777775433332222222 100
Q ss_pred cC-CCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 683 SG-SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 683 p~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
.+ .....+-+.+-.++.+..-.|++++|+..++++++.
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 00 000122333344555555555555555555555544
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.46 E-value=0.15 Score=54.71 Aligned_cols=171 Identities=13% Similarity=0.031 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 001509 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312 (1065)
Q Consensus 233 a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 312 (1065)
.+..++.+++..+......+|...++.+-...|+.+.++..--.+....++.+.+...+.+++.................
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 46667777777777677778888888887778887777766666666678888888888888876543333333333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-cCCCCCchhhhhhHHHHHHHcC--C------HHHHHHHHHHHHHh--CCCcH-----
Q 001509 313 RSYHSKGDYEKAGLYYMASVKE-INKPHEFIFPYYGLGQVQLKLG--D------FRSALTNFEKVLEI--YPDNC----- 376 (1065)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g--~------~~~A~~~~~~~l~~--~p~~~----- 376 (1065)
..+... ....|...+...+.. +...++......-+..++...+ + .+....++..+... .|-..
T Consensus 166 ~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a 244 (278)
T PF08631_consen 166 KQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA 244 (278)
T ss_pred HHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 333332 334566666555542 2222221111111222222222 1 22222333322211 22222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 377 --ETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 377 --~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
..+-..|.-.++.++|..|..+|+-++.
T Consensus 245 ~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 245 IHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2334457778889999999999997663
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.46 E-value=0.00031 Score=51.05 Aligned_cols=42 Identities=40% Similarity=0.517 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1065)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1065)
.+++.+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 346677777777777777777777777777777777776664
No 249
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.36 E-value=0.00025 Score=77.20 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
+...|+.|+..|.+++.++|+.+..+-.++.+++..+++..|+.-+.++++.+|....+++..|.+....+.+.+|+..|
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 45667788888888888888888777778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCchHHHHHHHHH
Q 001509 186 KRALQVHPSCPGAIRLGIGLC 206 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~ 206 (1065)
+......|+. +.+...+..|
T Consensus 96 ~~~~~l~Pnd-~~~~r~~~Ec 115 (476)
T KOG0376|consen 96 EKVKKLAPND-PDATRKIDEC 115 (476)
T ss_pred HHhhhcCcCc-HHHHHHHHHH
Confidence 8888888877 4444444444
No 250
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=1.2 Score=58.61 Aligned_cols=329 Identities=12% Similarity=0.039 Sum_probs=186.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHH-HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001509 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1065)
Q Consensus 45 ~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~ 123 (1065)
.+|.+-++.|.|..|+..+++-...+ ...+. ...+..|-.+|...+..+ .-...... ...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e-------k~~~~~e~l~fllq~lY~~i~dpD-----------gV~Gv~~~-r~a 1448 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE-------KEKETEEALYFLLQNLYGSIHDPD-----------GVEGVSAR-RFA 1448 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc-------chhHHHHHHHHHHHHHHHhcCCcc-----------hhhhHHHH-hhc
Confidence 67888888888999998888841111 11122 223344444777666655 22222221 122
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1065)
+| .+..........|++..|..+|++++..+|+....+.+.-...+..|.+...+...+-.....++........-
T Consensus 1449 ~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1449 DP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLG 1524 (2382)
T ss_pred Cc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHH
Confidence 33 45566677778899999999999999999998888888888889999999988877766655555533333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchH--hHHHHHHHHHHHHHh-------CCCCHHHHHHH
Q 001509 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA--GIRKGMEKMQRAFEI-------YPYCAMALNYL 274 (1065)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~--~~~~A~~~~~~al~~-------~p~~~~~~~~l 274 (1065)
-.+.|.+++++.-..+.. ..+-.+..+.. +|.+.+...... ...+.++..+..+-. .......+..+
T Consensus 1525 ~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1525 VEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred HHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHH
Confidence 344578888877665544 22222333321 454444433211 112233322221110 00001111111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCCCchhhhhhH
Q 001509 275 ANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPHEFIFPYYGL 348 (1065)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~l 348 (1065)
..++.... -....+......+. .......|-+....-....+..+-+-.+++++-... .......+|+..
T Consensus 1601 ~kLH~l~e----l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1601 MKLHLLLE----LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHHHH----HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 11111100 00011111111111 111222222222221222224444444555443321 234567789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
|++....|+++.|...+-.+.+.. -+.+....|..+...|+...|+.++++.+..+
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999999998888765 57889999999999999999999999999754
No 251
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.53 Score=54.33 Aligned_cols=192 Identities=10% Similarity=0.083 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHhcCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhcCCC---chhhhhh-hhHHHHHHHHHHHHHHHH
Q 001509 21 QLPRDASDILDILKAEQAPL--DLWLIIAREYFKQGKVEQFRQILEEGSSP---EIDEYYA-DVRYERIAILNALGVYYT 94 (1065)
Q Consensus 21 ~l~~d~~~~~~~L~~e~~~~--~~~~~~a~~y~~~g~~~~A~~~l~~~~~~---~~~~~~~-~~~~~~~~~l~~La~~y~ 94 (1065)
++.++...+..+...+..+- -+-+....+||..|.|++|+..--.+-.. +....|. ......++.+...+.-.+
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~ 117 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETY 117 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHh
Confidence 33445555555555554442 23367789999999999999987666321 1111111 111122222222221111
Q ss_pred HhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHhC--CCCHHHHHHHHHH
Q 001509 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV-LEAD--RDNVPALLGQACV 171 (1065)
Q Consensus 95 ~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~--p~~~~a~~~la~~ 171 (1065)
..-. .+..--.+-..++++++...-.+...+..+|..+-. ..+..++.+ ++.+ +++...++.+...
T Consensus 118 ~~~~------~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~-----~rld~ie~Ail~~d~~~~~~~yll~l~~s 186 (929)
T KOG2062|consen 118 KNPE------QKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFET-----RRLDIIEEAILKSDSVIGNLTYLLELLIS 186 (929)
T ss_pred cCcc------ccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhh-----hhHHHHHHHhccccccchHHHHHHHHHHH
Confidence 1100 000001123444555555554455555555554432 123344443 2222 2344455555555
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1065)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1065)
......|. .+.+..+++..-+.+..-++.+..|+..+.+.+.+...+++.++
T Consensus 187 ~v~~~efR--~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 187 LVNNREFR--NKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHhhHHHH--HHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 55533332 23344444443222222367889999999999999999999988
No 252
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.30 E-value=0.31 Score=57.86 Aligned_cols=239 Identities=15% Similarity=0.094 Sum_probs=156.8
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh-
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 570 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 570 (1065)
.+......+......+++.+|..++.++...-|. .....-..+.+....|+++.|.++.+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4555666677777888999999888887764443 134455567788899999999999999999877553
Q ss_pred ----HHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHH-----hhHHHHHHHHHhhhhcChhHHhhh--HHHHHH
Q 001509 571 ----NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL-----SLGNWNYFAALRNEKRAPKLEATH--LEKAKE 639 (1065)
Q Consensus 571 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~-----~lg~~~y~~~~~~~~~~~~~~~~~--~~~A~~ 639 (1065)
.++..+|.+..-.|++.+|..+...+.+.....+.+.+. .-+.+ .... |. +.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 467788888899999999999998888765444444322 22222 2222 42 222222
Q ss_pred HH----HHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCCCcchH-HHHHHHHHHHHcCCHHHHHHH
Q 001509 640 LY----TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPD-VWINLAHVYFAQGNFALAMKM 713 (1065)
Q Consensus 640 ~~----~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~ 713 (1065)
.| .+-+...|...+.....+.++...-+++.+..-....+..... ...+-++. +++.|+.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 22 3344456666666666666665444477766666665554432 11112222 335899999999999999999
Q ss_pred HHHHHHHhcCCC---c--HHHHHHHHHHHHHhhcHHHHHHHHHH
Q 001509 714 YQNCLRKFYYNT---D--AQILLYLARTHYEAEQWQDCKKSLLR 752 (1065)
Q Consensus 714 ~~~al~~~~~~~---~--~~~~~~lg~~~~~~g~~~~A~~~~~k 752 (1065)
+..+......+. + ..+..-....+...|++..|...+.+
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999887765543 1 22222333445568999999888876
No 253
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.073 Score=53.49 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=146.7
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~al 189 (1065)
.|+.+-..++..+|.+-.+|..+-.++-..+ +..+-+.++..++..+|.|...|...-.+.-..|++. .-+.+...++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776554 5788899999999999999999999988999999988 8899999999
Q ss_pred HhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c--chHhHHHHHHHHHHHHHhCCC
Q 001509 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-N--EAAGIRKGMEKMQRAFEIYPY 266 (1065)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~--~~~~~~~A~~~~~~al~~~p~ 266 (1065)
..+..+ -.+|...-.|+...+.++.-+.+...+++.+-.|-.+|...-.+.... | .....+.-+.+....+...|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988888 667888888888889999999999999999888877776544333221 1 112356677888899999999
Q ss_pred CHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q 001509 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (1065)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~al 295 (1065)
|..+|+.|..++.. .| .+..+..+....+
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999988875 44 2344444444444
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.3 Score=55.63 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1065)
+++|.+.|-.+-..+ .-..++...|+|-.+.+++...-.. ..+...-.++..+|..+.....++.|.++|.
T Consensus 750 feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d-~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSD-DDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765432211 2234566677777777766543211 1223456789999999999999999999998
Q ss_pred HHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1065)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (1065)
.... .-++..+++...+|++- +.+...-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 7753 23456777777777653 344445677888888999999999999999888755
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.27 E-value=0.069 Score=60.05 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCC----
Q 001509 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKP---- 338 (1065)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~---- 338 (1065)
......+..++.+....|.++.|...+..+....... ...+.+.+..+..+...|+..+|+..+...+. .....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 3455677788888888888888888888877643222 22567778888888888888888888877776 22111
Q ss_pred --------------------------CCchhhhhhHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001509 339 --------------------------HEFIFPYYGLGQVQLKL------GDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1065)
Q Consensus 339 --------------------------~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1065)
.....+++.+|...... +..+.++..|..++..+|....+|+.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 11123455566666666 7888899999999999999888999888877
Q ss_pred HHc
Q 001509 387 VQL 389 (1065)
Q Consensus 387 ~~~ 389 (1065)
...
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 655
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.26 E-value=0.15 Score=54.75 Aligned_cols=237 Identities=14% Similarity=0.112 Sum_probs=139.2
Q ss_pred HHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHc
Q 001509 436 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 515 (1065)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~ 515 (1065)
...|+++.|..++.++-.... .... ........++|+.|......
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~---~~~~--------------------------------~~~~~La~~~yn~G~~l~~~ 48 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN---SLDP--------------------------------DMAEELARVCYNIGKSLLSK 48 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh---cCCc--------------------------------HHHHHHHHHHHHHHHHHHHc
Confidence 568999999999999865321 0000 01112567899999999999
Q ss_pred C-ChHHHHHHHHHHHHHC----------CCh----HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHCCCChHHHHHhh
Q 001509 516 H-DTVAASVLYRLILFKY----------QDY----VDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSMLG 577 (1065)
Q Consensus 516 g-~~~~A~~~~~~al~~~----------p~~----~~a~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~ 577 (1065)
+ +++.|..++++++..- |+. ..++..++.++...+.++ .|..+++.+-...|+.+.++...-
T Consensus 49 ~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l 128 (278)
T PF08631_consen 49 KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKL 128 (278)
T ss_pred CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 9 9999999999998762 111 346778888888877654 456666666667788888887767
Q ss_pred hhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhC--Ccch-HH
Q 001509 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH--TSNL-YA 654 (1065)
Q Consensus 578 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~-~a 654 (1065)
.+..+.++.+.+.+.+.+++...+-.+...-..+..+.-+.. .....|...+...+... |... +.
T Consensus 129 ~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~------------~~~~~a~~~ld~~l~~r~~~~~~~~~ 196 (278)
T PF08631_consen 129 EILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE------------KSPELAAFCLDYLLLNRFKSSEDQWL 196 (278)
T ss_pred HHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh------------hCcHHHHHHHHHHHHHHhCCChhHHH
Confidence 776778999999999999988655333332222332211111 34456666666666542 3221 11
Q ss_pred -HhHHHHHHHhc--CCcHHH--HHHHHHHHH---HhcCCCCCc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 655 -ANGAGVVLAEK--GQFDVS--KDLFTQVQE---AASGSVFVQ-----MPDVWINLAHVYFAQGNFALAMKMYQNCLR 719 (1065)
Q Consensus 655 -~~~la~~~~~~--g~~~~A--~~~~~~~~~---~~p~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 719 (1065)
..-+..++... ++.... ++.+..++. ......... ....+.+.|...++.++|..|+.+|+-++.
T Consensus 197 e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 197 EKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 11112222222 222222 223322222 111111101 112344667777777888888888877664
No 257
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0027 Score=62.55 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDN----------VPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1065)
.++...|+-++..|+|.+|...|..++.. .|.. .+.+++++.|++..|+|-+++.....+|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 56777899999999999999998887632 3433 35567778888888888888888888888
Q ss_pred hCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1065)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1065)
..|.+ ..+++..|.+....=+..+|...|.++++++|.-.
T Consensus 259 ~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 259 HHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred cCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 88888 66678888888888888888888888888887543
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.67 Score=52.98 Aligned_cols=239 Identities=13% Similarity=0.045 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-----CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Q 001509 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (1065)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 341 (1065)
+|..|..|+.....+-.++.|...|-+.-...... .....--...+.+-.--|.|++|.+.|-.+-.. +
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-----D- 764 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-----D- 764 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----h-
Confidence 67788888887777777766666665443221100 000001122344444557777777777554320 1
Q ss_pred hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
.-..++.+.|++-....+++..-.-.. .-..++..+|..+..+..+++|.++|...-..
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------------- 825 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------------- 825 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------------
Confidence 112345556666655555543221111 11457777777777777777777777654321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
-++..++++...|++-..+.. .-|
T Consensus 826 ---------e~~~ecly~le~f~~LE~la~-----------------------------------------------~Lp 849 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFGELEVLAR-----------------------------------------------TLP 849 (1189)
T ss_pred ---------HhHHHHHHHHHhhhhHHHHHH-----------------------------------------------hcC
Confidence 223444555444443322222 234
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhh
Q 001509 500 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579 (1065)
Q Consensus 500 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 579 (1065)
.+...+-.+|..+...|.-++|.+.|-+. ..|.- ........+++.+|.++.++.- -|.-.......+.-
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~--s~pka------Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRR--SLPKA------AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQ 919 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhc--cCcHH------HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence 46667777888888888888888776543 12221 1122344556666666554421 12222222223333
Q ss_pred hccccchHHHHHHHHHh
Q 001509 580 ELKNDDWVKAKETFRAA 596 (1065)
Q Consensus 580 ~~~~g~~~~A~~~~~~a 596 (1065)
++..++..+|++.++++
T Consensus 920 ll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHhhcchHHHHHHhhhc
Confidence 44556666666666654
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.042 Score=56.70 Aligned_cols=151 Identities=18% Similarity=0.068 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
...-+..+.-....|++..|...|..++...|.+..+.+.++.++...|+.+.|..++...-.................+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34455666777777888888888888888888887888888888888888877777665532222222111000011222
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Q 001509 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTG 282 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g 282 (1065)
.+....... ..+++.+..+|++..+.+.++..+...|+ .+.|+..+-..+..+- .+..+...+..++...|
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 222222221 23344455567777777777777777666 6667666666665543 23344444444444444
No 260
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=1.2 Score=58.69 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=89.1
Q ss_pred chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-cC------
Q 001509 651 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-YY------ 723 (1065)
Q Consensus 651 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------ 723 (1065)
-...|...|.+--..|.++.|...+-.+.+.. -+.++...|..+...|+-..|+..++..+... ++
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 45678888888888999999998888887765 37899999999999999999999999999653 22
Q ss_pred --CCc------HHHHHHHHHHHHHhhcHH--HHHHHHHHHHHhCCCCcchHHHHHHHhhHHHHHHH
Q 001509 724 --NTD------AQILLYLARTHYEAEQWQ--DCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTL 779 (1065)
Q Consensus 724 --~~~------~~~~~~lg~~~~~~g~~~--~A~~~~~kal~~~P~~~~~~~nla~~~~~~~~~~l 779 (1065)
|.. ..+.+.++.-....|++. +-+++|+.+..+.|....-+|.+|..+.++-....
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~ 1807 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYK 1807 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhh
Confidence 011 122333333333445432 35688999999999888888999976666655433
No 261
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.18 E-value=0.00032 Score=47.33 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=18.0
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001509 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (1065)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~ 148 (1065)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.16 E-value=0.32 Score=54.63 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=111.5
Q ss_pred CCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhcCC--
Q 001509 648 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN-- 724 (1065)
Q Consensus 648 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~-- 724 (1065)
.......+..++.+..+.|+++.|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3346678899999999999999999999999886532211 2678999999999999999999999999887 22211
Q ss_pred ---------------------C-c-------HHHHHHHHHHHHHh------hcHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 001509 725 ---------------------T-D-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 769 (1065)
Q Consensus 725 ---------------------~-~-------~~~~~~lg~~~~~~------g~~~~A~~~~~kal~~~P~~~~~~~nla~ 769 (1065)
. . +.++..+|.-.... +..+++...|..++++.|+....++++|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 1 45556666666666 77788899999999999999999999998
Q ss_pred HhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Q 001509 770 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 808 (1065)
Q Consensus 770 ~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~ 808 (1065)
.+............. ... .....-+..|+..|-.-..
T Consensus 301 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ai~~y~~al~ 337 (352)
T PF02259_consen 301 FNDKLLESDPREKEE-SSQ-EDRSEYLEQAIEGYLKALS 337 (352)
T ss_pred HHHHHHHhhhhcccc-cch-hHHHHHHHHHHHHHHHHHh
Confidence 765554422211111 111 2234456667776644433
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.16 E-value=0.00035 Score=47.18 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=20.8
Q ss_pred HHHHHhhCCcchHHHhHHHHHHHhcCCcHHHH
Q 001509 641 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 672 (1065)
Q Consensus 641 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 672 (1065)
|+++++++|+|+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
No 264
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.15 E-value=0.56 Score=58.04 Aligned_cols=186 Identities=8% Similarity=-0.046 Sum_probs=95.5
Q ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChH--------HHHHhhhhhcc
Q 001509 516 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-----GKYPN--------ALSMLGDLELK 582 (1065)
Q Consensus 516 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~--------~~~~l~~~~~~ 582 (1065)
|..---..+++.+....| ..+....-.+....|+++-+.......-+.. |.+.. .+..-..+...
T Consensus 670 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (932)
T PRK13184 670 GFTPFLPELFQRAWDLRD--YRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSN 747 (932)
T ss_pred cCchhhHHHHHHHhhccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHc
Confidence 444444556666655443 2666777777888898887766655543211 22221 11111222234
Q ss_pred ccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHH
Q 001509 583 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 662 (1065)
Q Consensus 583 ~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 662 (1065)
...++++.+.+... ++.....+-++ +...+-.... ...+-.+++.+.+.....-..........++|
T Consensus 748 ~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (932)
T PRK13184 748 KEDYEKAFKHLDNT-------DPTLILYAFDL-FAIQALLDEE-----GESIIQLLQLIYDYVSEEERHDHLLVYEIQAH 814 (932)
T ss_pred cccHHHHHhhhhhC-------CHHHHHHHHHH-HHHHHHHhcc-----chHHHHHHHHHHhccCChhhhhhhhHHHHHHH
Confidence 44566666544421 11111112222 2222111100 02222333333322222222344455567778
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 663 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 719 (1065)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 719 (1065)
....+++.|-.++...-...-. .+...+++..|..+...++-+-|...|.-|.+
T Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 815 LWNRDLKKAYKLLNRYPLDLLL---DEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHhccHHHHHHHHHhCChhhhc---cccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 8888999998888553322211 14456778888888888888889999888874
No 265
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.13 E-value=0.00071 Score=73.73 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC
Q 001509 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1065)
..+..++..+.|+.|+.+|.++|.++|+++..+-..+.+++..++|..|+..+.++++.+|.. ...|+..|.++..++.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALGE 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHHH
Confidence 456677788899999999999999999999999999999999999999999999999999988 6778889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 213 LGKARQAFQRALQLDPENVEALVALAVMDL 242 (1065)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1065)
+.+|...|+....+.|+.+.+...+..+..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999887766665543
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.051 Score=56.10 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHH
Q 001509 536 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 615 (1065)
Q Consensus 536 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~ 615 (1065)
.+.-+.-+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-..........+ .+.+.
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l--~a~i~ 211 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL--QAQIE 211 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH--HHHHH
Confidence 3344455666778899999999999999999999999999999999999999999888864332222111111 11110
Q ss_pred HHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHH
Q 001509 616 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 695 (1065)
Q Consensus 616 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 695 (1065)
+...+ .... -...+.+.+..+|+|..+.+.++..+...|+.+.|++.+-.++..+.+. .+..+.-
T Consensus 212 ll~qa-----------a~~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~Rk 276 (304)
T COG3118 212 LLEQA-----------AATP-EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEARK 276 (304)
T ss_pred HHHHH-----------hcCC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHHH
Confidence 11110 0000 1234566677899999999999999999999999999998888876543 4455665
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 001509 696 NLAHVYFAQGNFALAMKMYQ 715 (1065)
Q Consensus 696 ~lg~~~~~~g~~~~A~~~~~ 715 (1065)
.+-.++...|.-+.+...|+
T Consensus 277 ~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 277 TLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 66666555554443443333
No 267
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.11 E-value=1 Score=53.61 Aligned_cols=278 Identities=17% Similarity=0.043 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--CCchhhh
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP--HEFIFPY 345 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~ 345 (1065)
...+..-+..+...|...+|+...-.+-.. ..-+......+.-++..++..--. ..++.+|.+ -..+...
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~----~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDP----EMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCH----HHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCchHH
Confidence 556666666666777777766654433110 111122222333344444433222 222222100 1122334
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPD---------NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL 416 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 416 (1065)
+..+.......++.+|..++.++...-|. .....-..|.+....|+++.|..+.+.++..-|.+.....+
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~- 497 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI- 497 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh-
Confidence 45677778889999999888887764332 13455567888889999999999999999987776543222
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcC
Q 001509 417 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 496 (1065)
Q Consensus 417 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 496 (1065)
.++..+|.+..-.|++.+|..+...+....... +
T Consensus 498 ---------~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-------------------------------------~ 531 (894)
T COG2909 498 ---------VALSVLGEAAHIRGELTQALALMQQAEQMARQH-------------------------------------D 531 (894)
T ss_pred ---------hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-------------------------------------c
Confidence 467888999999999999999999887632100 0
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHH--HHHHHH----HHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----C
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----N 566 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~a----l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~ 566 (1065)
.......+.+..+.++..+|+...|. ..+... +...|-..-.....+.++...-+++.+..-....+.. .
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~ 611 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT 611 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc
Confidence 12224556667788888888433332 223222 2233332222222222222222244444444333333 2
Q ss_pred CCChH---HHHHhhhhhccccchHHHHHHHHHhhhcC
Q 001509 567 GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDAT 600 (1065)
Q Consensus 567 p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 600 (1065)
|.... ++++++.+++..|++++|...+..+....
T Consensus 612 ~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 612 PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 33222 23478888888899999988888776643
No 268
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.08 E-value=0.0013 Score=44.56 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
.+++.+|.+++..|++++|+.+|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666654
No 269
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0069 Score=59.73 Aligned_cols=121 Identities=21% Similarity=0.170 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHH
Q 001509 426 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 505 (1065)
Q Consensus 426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1065)
.++..-|.-++..|+|.+|...|..|+..-... .+...+.. .++ +.++....+.+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L-~lkEkP~e--------------~eW----------~eLdk~~tpLl 233 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNL-QLKEKPGE--------------PEW----------LELDKMITPLL 233 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH-HhccCCCC--------------hHH----------HHHHHhhhHHH
Confidence 456777999999999999999999998631100 00010000 000 11233356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Q 001509 506 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 571 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 571 (1065)
.|++.|+...|++-++++....++..+|.+..+|++.|......=+..+|...|.+++.++|.-..
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 899999999999999999999999999999999999999999888999999999999999886544
No 270
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.05 E-value=0.018 Score=63.69 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=120.4
Q ss_pred CHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHH--HHHhchhhhh
Q 001509 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (1065)
Q Consensus 25 d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~--y~~~g~~~~~ 102 (1065)
|+..++.+|...|-..+.+++++.++..+|+...|-.++++++-. | ++. ........ -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~-----e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----F-----ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H-----HHH-HHHHhhhhhcccccCccc--
Confidence 999999999999999999999999999999999999999998422 0 000 00000000 00111111
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCC
Q 001509 103 QREKEEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVP-ALLGQACVEFNRGR 177 (1065)
Q Consensus 103 ~~~k~~~~~~A~~~~~~a~~~~p~~~---~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~-a~~~la~~~~~~g~ 177 (1065)
.--..+.|. .+++.....+.++|-+..|+++++-++.++|. ++. +++.+-....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 000112222 34556677888999999999999999999998 664 44555556677788
Q ss_pred hHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 001509 178 YSDSLEFYKRALQVHPSC----PGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (1065)
Q Consensus 178 ~~~Al~~~~~al~~~p~~----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (1065)
|+--+.+++......... .+...+.++.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 888888887765521111 234567888888888888 7888888888887764
No 271
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.12 Score=56.38 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCchHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHH
Q 001509 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYK---LGQLGKARQAFQR-ALQLDPENVEALV 235 (1065)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~----~p~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~a~~ 235 (1065)
....+-.+|....+|+.-+.+.+.+-.+ -++. ..+.+.+|.++.+ .|+.++|+..+.. +....+.+++.+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~-~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ-HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc-hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3344444555555555555555544433 1222 3445555666655 5666666666655 3333444555566
Q ss_pred HHHHHHHHc------cchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHH
Q 001509 236 ALAVMDLQA------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309 (1065)
Q Consensus 236 ~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 309 (1065)
.+|.+|-.. .+....++|+..|.+++..+|+.-. -.+++.++...|.......-..+. -.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i-------------~~ 287 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETSEELRKI-------------GV 287 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccchHHHHHH-------------HH
Confidence 666555321 1223477888888888888864332 233344444444322211111110 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
.+...+.+.|..+ .....+.+-.++.+.+-.|++++|+..+++++...|..
T Consensus 288 ~l~~llg~kg~~~---------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 288 KLSSLLGRKGSLE---------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHhhcccc---------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1112222222211 12222334445666667778888888888887776553
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.022 Score=54.79 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001509 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1065)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1065)
...++..+...|++++|...+..++....+..-...+-.+++.+++..|.+++|+..+....... -.+......|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence 34445555555555555555555553222212223344556666666666666666665543210 01233445566666
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 001509 388 QLGQIEKAQELLRKAAKIDPR 408 (1065)
Q Consensus 388 ~~g~~~~A~~~~~~al~~~p~ 408 (1065)
..|+..+|+..|.+++...++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 666666666666666666533
No 273
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.082 Score=55.05 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHH
Q 001509 690 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 767 (1065)
Q Consensus 690 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nl 767 (1065)
.+..+-.-|+-|++.++|..|+..|.+.|+.--..++ ...|.+.+-+.+..|+|..|+.-..+++.+.|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4456667789999999999999999999987444444 67778889999999999999999999999999999888877
Q ss_pred HHHh
Q 001509 768 GVAM 771 (1065)
Q Consensus 768 a~~~ 771 (1065)
|.|+
T Consensus 160 Akc~ 163 (390)
T KOG0551|consen 160 AKCL 163 (390)
T ss_pred hHHH
Confidence 7763
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.044 Score=52.79 Aligned_cols=120 Identities=19% Similarity=0.045 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 252 KGMEKMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1065)
Q Consensus 252 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1065)
+......+....+|.+. .+...++..++..+++++|+..++.++..+.+....+.+-..++++...+|.++.|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455555555565543 345667899999999999999999999887776677788899999999999999999988
Q ss_pred HHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
..... +..........|.++...|+-.+|...|++++...++.
T Consensus 150 ~t~~~----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKE----ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccc----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 76653 22233445668999999999999999999999987543
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.91 E-value=0.0018 Score=43.95 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
.+++.+|.+|...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.85 E-value=0.0018 Score=43.87 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555556666666666555555554
No 277
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.2 Score=50.55 Aligned_cols=236 Identities=14% Similarity=0.050 Sum_probs=153.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
...-..|+.+.+.++..+|.+..+|...-.++..++ +..+-+.++..++.-+|.+.+ +|...-.
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ---------------vWHHRr~ 120 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ---------------VWHHRRV 120 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh---------------HHHHHHH
Confidence 345567888888888899988888888777776664 567778888888888888884 5666666
Q ss_pred HHHHcCCHH-HHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHH
Q 001509 434 IHFEKGEFE-SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 512 (1065)
Q Consensus 434 ~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 512 (1065)
+....|++. .-+...+.++. .+..+-.+|...--++
T Consensus 121 ive~l~d~s~rELef~~~~l~-------------------------------------------~DaKNYHaWshRqW~~ 157 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLD-------------------------------------------DDAKNYHAWSHRQWVL 157 (318)
T ss_pred HHHHhcCcccchHHHHHHHHh-------------------------------------------ccccchhhhHHHHHHH
Confidence 666677766 56666666665 2334556666666677
Q ss_pred HHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHCCCChHHHHHhhhhhcc-cc-
Q 001509 513 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RN-----NLQLSIELVNEALKVNGKYPNALSMLGDLELK-ND- 584 (1065)
Q Consensus 513 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g- 584 (1065)
...+.++.-+.+...+++.+-.+-.+|+..-.+... .| ..+.-+.+..+.+.+.|++..+|..|.-++.. .|
T Consensus 158 r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl 237 (318)
T KOG0530|consen 158 RFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGL 237 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCC
Confidence 777788888888888888777666666554333222 22 23345667778888899999999888777664 44
Q ss_pred -chHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHH-hhCCcch
Q 001509 585 -DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-VQHTSNL 652 (1065)
Q Consensus 585 -~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~~p~~~ 652 (1065)
............+...+...++.+--|..+ |...+...+...+ .-..+|..+|+.+- +.+|-..
T Consensus 238 ~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~-~~e~~l~~~~~~~---~~a~~a~~ly~~La~~~DpiR~ 303 (318)
T KOG0530|consen 238 SSDSKVVSFVENLYLQLPKRSPFLLAFLLDL-YAEDALAYKSSAE---ELARKAVKLYEDLAIKVDPIRK 303 (318)
T ss_pred cCCchHHHHHHHHhhccCCCChhHHHHHHHH-HHHHHhhccccch---HHHHHHHHHHHHHhhccCcHHH
Confidence 244455555555444455677777777777 6333222221111 01224777776655 5666533
No 278
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.82 E-value=0.0027 Score=43.01 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
+|+.+|.+++..|++++|+..|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 279
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.76 E-value=1.9 Score=50.96 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=128.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCChHHHHHhhhh
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 579 (1065)
....|..+.......|.+..-...+++++...+.....|+..+...- ..+-...+...+..++...|-...+|...-..
T Consensus 311 ~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallA 390 (881)
T KOG0128|consen 311 KDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLA 390 (881)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHH
Confidence 33445555566666777777777777777777777777766655432 23334444555555666666554444433222
Q ss_pred hccccc-hHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHh-hhh----cChhHHhhhHHHHHHHHHHHHhhC-Ccch
Q 001509 580 ELKNDD-WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR-NEK----RAPKLEATHLEKAKELYTRVIVQH-TSNL 652 (1065)
Q Consensus 580 ~~~~g~-~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~-~~~----~~~~~~~~~~~~A~~~~~~~l~~~-p~~~ 652 (1065)
+.+.+. ...-...+.+.+...- .+.+- |+...+ ... .....-+..|..|..+|....... -...
T Consensus 391 leR~re~~~vI~~~l~~~ls~~~--------~l~~~-~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~ 461 (881)
T KOG0128|consen 391 LERNREEITVIVQNLEKDLSMTV--------ELHND-YLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRT 461 (881)
T ss_pred HHhcCcchhhHHHHHHHHHHHHH--------HHHHH-HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 222222 2222233333332110 01111 111100 000 011112366777888877776652 2233
Q ss_pred HHHhHHHHHHH-hcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHHH
Q 001509 653 YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQIL 730 (1065)
Q Consensus 653 ~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~ 730 (1065)
..+...|.+.+ ..++.+.|+.+.+.+.....+ .....|+....+-...|+...+..++.+|+.....+.+ -.++
T Consensus 462 ~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~ 537 (881)
T KOG0128|consen 462 EVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVL 537 (881)
T ss_pred HHHHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHH
Confidence 45566666666 457899999988887664431 23337888888888889999999999999876444433 3444
Q ss_pred HHHHHHHHHhhcHHHHHHH
Q 001509 731 LYLARTHYEAEQWQDCKKS 749 (1065)
Q Consensus 731 ~~lg~~~~~~g~~~~A~~~ 749 (1065)
...-+.....|.++.....
T Consensus 538 ~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 538 EFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HHHHHHHhccccHHHHhhh
Confidence 4444444455555554433
No 280
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.044 Score=56.96 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1065)
.+-.-|+-|+...+|..|..+|...|+.... ++..|.+.|.+.+..|+|..|+..+.+++..+|.+ .-+++.-+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhhH
Confidence 4445678888888888888888888776433 34567778888888888888888888888888888 566777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Q 001509 206 CRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
|++.+..+..|..+.+..+.++-
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhH
Confidence 88888888888888887766543
No 281
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.72 E-value=1.1 Score=55.46 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=103.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001509 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1065)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~ 123 (1065)
+.+-.+++....|+.|+..|.++..+ |++.+ +--.+.+.+|...+...+...+ ...|.+|+..|++.- -
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~ 547 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRES-----FPGRK-EGYEAQFRLGITLLEKASEQGD----PRDFTQALSEFSYLH-G 547 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhc-----CCCcc-cchHHHHHhhHHHHHHHHhcCC----hHHHHHHHHHHHHhc-C
Confidence 55667788888999999999997554 43322 3345677778777776665433 257889999998864 4
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCC
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-----GRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-----g~~~~Al~~~~~al~~~p~~ 195 (1065)
.|.-|--|+..|.+|...|+|++-+++|.-+++..|+++..-...-.+.++. .+-..|+...--++...|..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4777888999999999999999999999999999999876655544444433 23345666666677777766
No 282
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.67 E-value=1.4 Score=48.30 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
+|+...|.+-+..+++..|..|......+.++...|.|+.|...+..+-..-..-..+...+-+..+..|++++|+....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 45556666666667777777777777777777777777777777665544433334445555566677777777777766
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
-++.-.-+. +.+....+...-.+|-+++|.-.|++++.++|.....|
T Consensus 382 ~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 382 MMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 666554444 33333344455566777777777777777776544333
No 283
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.61 E-value=0.96 Score=45.75 Aligned_cols=202 Identities=16% Similarity=0.159 Sum_probs=125.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHH
Q 001509 355 LGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNN 430 (1065)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~ 430 (1065)
...+++|+..|++++++.+.. ..++..+..+++++|++++-...|.+++..-.... ....+....++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV---------TrNySEKsIN~ 110 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV---------TRNYSEKSINS 110 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH---------hccccHHHHHH
Confidence 347899999999999987764 45777888899999999999999988775311100 00111122333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHH
Q 001509 431 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 510 (1065)
Q Consensus 431 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~ 510 (1065)
+-..-....+.+.-...|+..+..- .... ........-..+|.
T Consensus 111 IlDyiStS~~m~LLQ~FYeTTL~AL------------------------------kdAK-------NeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 111 ILDYISTSKNMDLLQEFYETTLDAL------------------------------KDAK-------NERLWFKTNTKLGK 153 (440)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH------------------------------Hhhh-------cceeeeeccchHhh
Confidence 3333223333333333333332200 0000 01111223345888
Q ss_pred HHHHcCChHHHHHHHHHHHHHCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--hH----H
Q 001509 511 LLEQIHDTVAASVLYRLILFKYQD------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--PN----A 572 (1065)
Q Consensus 511 ~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~----~ 572 (1065)
+|...|.+..-..+++++-..+.. ....|..-..+|..+.+...-..+|++++.+...- |. +
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvI 233 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVI 233 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHH
Confidence 888888888888887776653321 14466666778888888888889999999876433 32 3
Q ss_pred HHHhhhhhccccchHHHHHHHHHhhhcCCC
Q 001509 573 LSMLGDLELKNDDWVKAKETFRAASDATDG 602 (1065)
Q Consensus 573 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 602 (1065)
.-.=|..+++.|+|.+|..-|-.+.+.++.
T Consensus 234 RECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 234 RECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 334567788899999999988888876543
No 284
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.58 E-value=0.015 Score=50.69 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=83.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCC
Q 001509 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (1065)
Q Consensus 46 ~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p 125 (1065)
.|..++..|++-+|+.+++.++...... . ...-++..-|.++..++..-.+...|..++..++++|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 5789999999999999999986542211 0 112456667888888888777777888888899999999999999
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1065)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 157 (1065)
..+..++.+|.-+-...-|+++..-.++.+..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888877777788888888887765
No 285
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.53 E-value=0.17 Score=55.57 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHH
Q 001509 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1065)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1065)
+.-+.+|++|++.+|++ ..+++.+-.+..+..+.+....-|++++..+|++...|..+.......-..-.+......|.
T Consensus 48 E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34567777888888876 56666666666677777777777888888888777776655544433211111445555555
Q ss_pred HHHH
Q 001509 259 RAFE 262 (1065)
Q Consensus 259 ~al~ 262 (1065)
+++.
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 5543
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.46 E-value=0.093 Score=58.14 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=101.8
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------C------------CCC---HHHHHHHH
Q 001509 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------D------------RDN---VPALLGQA 169 (1065)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~a~~~la 169 (1065)
..+..+|.+.++++.++.++..+|++..|..++++++-. + +.| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 346788999999999999999999999998888887521 1 122 23456667
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 001509 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1065)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1065)
..+.++|-+..|+++++-++.++|. +|-.+++.+-....+.++++--+..++........ -+...+..+..+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7788889999999999999999988 67777787888888888888777777765442111 11233344444444
Q ss_pred ccch------------HhHHHHHHHHHHHHHhCCC
Q 001509 244 ANEA------------AGIRKGMEKMQRAFEIYPY 266 (1065)
Q Consensus 244 ~~~~------------~~~~~A~~~~~~al~~~p~ 266 (1065)
.++. ...+.|-..+.+++...|.
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4431 1125666666666666553
No 287
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.36 E-value=0.46 Score=51.69 Aligned_cols=172 Identities=19% Similarity=0.119 Sum_probs=114.0
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCChHHHHHhhhhhcc----ccc
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDD 585 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~ 585 (1065)
..+.+..|...+..+-. -....+...++.++... .+...|..+|.. .....++...+.||.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccC
Confidence 44677777777777654 22336777778777653 368889999994 4456678889999999887 458
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhc
Q 001509 586 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 665 (1065)
Q Consensus 586 ~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~ 665 (1065)
..+|..+|.++.......-..+...+|.+ |.... .... -..+...|...|.++.... ++.+...+|.+|..-
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~~~----~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QALA----VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hhhc----ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 99999999999887654224457778877 66541 0000 0033456777777776655 555666677666542
Q ss_pred ----CCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcC
Q 001509 666 ----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 705 (1065)
Q Consensus 666 ----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g 705 (1065)
.++.+|...|.++.+.. + +...++++ +++..|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 36777777777777654 2 56677777 555555
No 288
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.29 E-value=0.18 Score=55.36 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=67.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccc---------hHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001509 219 AFQRALQLDPENVEALVALAVMDLQANE---------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1065)
Q Consensus 219 ~~~~al~~~p~~~~a~~~la~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1065)
-|.+.+..+|.++.+|+.+..+.-..-. ....+..+.+|++|++.+|++...+..+-.......+.+....
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556666667777776666654433311 1224566677777777777777777777777777777777777
Q ss_pred HHHHHHhccCCCCCchHHHHHHH---HHHHHcCCHHHHHHHHHHHHHh
Q 001509 290 LTETALAVTNHGPTKSHSYYNLA---RSYHSKGDYEKAGLYYMASVKE 334 (1065)
Q Consensus 290 ~~~~al~~~~~~~~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~ 334 (1065)
.++.++...+. ....|.... ...+..-.+......|.+++..
T Consensus 87 ~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 87 KWEELLFKNPG---SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 77777766432 333333322 2222334566777777777653
No 289
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.23 E-value=0.21 Score=47.74 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 001509 428 LNNIGVIHFEKGEFESAHQSFKDALGDG 455 (1065)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (1065)
+...|......|+...++..+.+++.+.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly 36 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALY 36 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3444666677889999999999999853
No 290
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.23 E-value=0.0025 Score=66.24 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1065)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1065)
|+.|+..|..++.++|.....+..++.+++..++...|+.-|..++.++|+...-+-..+.....+|++.+|...+..++
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 33555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HhC
Q 001509 190 QVH 192 (1065)
Q Consensus 190 ~~~ 192 (1065)
+++
T Consensus 210 kld 212 (377)
T KOG1308|consen 210 KLD 212 (377)
T ss_pred hcc
Confidence 443
No 291
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.41 Score=53.76 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhh------------cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Q 001509 109 HFILATQYYNKASR------------IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------- 157 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~------------~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------- 157 (1065)
-|.+|...|.-+.. ..|.+...++.++.++..+|+.+.|..+..++|-.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 35566666655433 35777889999999999999988887777776521
Q ss_pred --CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHh
Q 001509 158 --DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQL 226 (1065)
Q Consensus 158 --~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----l~~ 226 (1065)
.|.|- .+++..-..+.+.|-+..|+.+++-++.++|. +|-.+.+.+-....+..+|.=-+..++.. +..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 22332 23444455667789999999999999999998 66666676766777888888777777765 333
Q ss_pred CCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCC
Q 001509 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1065)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1065)
-|+ ...-..++.+++..........|...+.+|+.+.|.
T Consensus 413 ~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 413 LPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred cCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 453 344566777777776655577888899999988874
No 292
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.16 E-value=0.0062 Score=63.43 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=85.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCH
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1065)
.+.-.+..|.++.|+..|..++.++|.....+...+.+++..++...|+..|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 45556678889999999999999999999999999999999999999999999999999999 55678889999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 001509 214 GKARQAFQRALQLDP 228 (1065)
Q Consensus 214 ~~A~~~~~~al~~~p 228 (1065)
.+|...|..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999998864
No 293
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.098 Score=50.02 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1065)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1065)
++..++..+...|++..|+..+++++..+|-+ ..++..+..++...|+...|+..|.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44455555666666666666666666666666 5556666666666666666666666553
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.05 E-value=0.0099 Score=39.81 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 730 LLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 730 ~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
++.+|.++...|++++|+..|++++..+|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444555444555555555555444443
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.02 E-value=0.012 Score=40.38 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 001509 693 VWINLAHVYFAQGNFALAMKMYQNCLRKF 721 (1065)
Q Consensus 693 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 721 (1065)
+|.+||.+|..+|+|++|+.+|++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36678888888888888888888866543
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.01 E-value=1.1 Score=48.74 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCh
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK----GEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRY 178 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~ 178 (1065)
...+..|...+..+... .++...+.++..|... .+..+|...|..+. ...++.+.+.+|.++.. ..++
T Consensus 54 ~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCH
Confidence 34566777777777652 2335677777777654 45788888888543 44577888888888877 4588
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cchHhH
Q 001509 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-------QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1065)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1065)
.+|..+|.++....-.......+.+|.+|..-. +...|...|.++-... ++.+.+.+|.+|..- |-..++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 899999999988754431234566777776542 2336888888877665 677778888776553 333457
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1065)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1065)
.+|+..|.++..... ...++.++ +++..|
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 888888888877765 66667777 555555
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.00 E-value=0.016 Score=38.81 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcC
Q 001509 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 723 (1065)
Q Consensus 692 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 723 (1065)
++++++|.+|...|++++|+..|+.+++.+|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 47899999999999999999999999999875
No 298
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=2.3 Score=47.99 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001509 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1065)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1065)
....+.+.......|+++...+..+..+...|+.+.|+..|...+...-. ....++.+|.++....+|..|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555666677888888888888888888888888888877661100 2345677888888888999998888888
Q ss_pred HHhCCCCchHHHHHHHHHHH
Q 001509 189 LQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~ 208 (1065)
...+.-+.....+..|.|++
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHh
Confidence 87776663333344455554
No 299
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.86 E-value=0.015 Score=39.27 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1065)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1065)
+++.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666666666666666666666666663
No 300
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.86 E-value=0.015 Score=39.30 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 001509 729 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 758 (1065)
Q Consensus 729 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~P 758 (1065)
+++.+|.+|...|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444455555555555555555555555544
No 301
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.71 E-value=0.071 Score=47.87 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 690 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 690 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
.....|+++|++.... +..+.+.+++..++.-+....-+.+|+|+..+++.++|+.++.+....++..|+|..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4578899999998765 45678899999987322233478999999999999999999999999999999998766
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.62 E-value=0.16 Score=47.85 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1065)
..++....+-+..++.+.+..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +.+.-.++.|++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3456666777777888888888888888888888888888888889999999999988887777777 666777888888
Q ss_pred HcCCHH
Q 001509 209 KLGQLG 214 (1065)
Q Consensus 209 ~~g~~~ 214 (1065)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 887753
No 303
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=3.1 Score=42.72 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHH
Q 001509 427 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 506 (1065)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 506 (1065)
+-..+..+++..|.|.+|+......+..-. ..+..+....++.
T Consensus 127 Le~Kli~l~y~~~~YsdalalIn~ll~ElK-------------------------------------k~DDK~~Li~vhl 169 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALINPLLHELK-------------------------------------KYDDKINLITVHL 169 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHH-------------------------------------hhcCccceeehhh
Confidence 445677889999999999988877664110 0113445566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH-----HCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHC
Q 001509 507 NLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAYL--RLAAIAKARNNLQLSIELVNEALKVN 566 (1065)
Q Consensus 507 ~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~--~la~~~~~~g~~~~A~~~~~~al~~~ 566 (1065)
.-..+|....+..++...+..+-. ..|....+.+ .-|.+.+...+|..|..+|-++++-.
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 777788887877777766665543 2343333322 22445566678888888888877744
No 304
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=4.2 Score=42.99 Aligned_cols=170 Identities=11% Similarity=0.055 Sum_probs=105.1
Q ss_pred HHHHHHHHHccchHhHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC--CCch-
Q 001509 235 VALAVMDLQANEAAGIRKGMEKMQRAFE----IYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG--PTKS- 305 (1065)
Q Consensus 235 ~~la~~~~~~~~~~~~~~A~~~~~~al~----~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~- 305 (1065)
..|..+|...++ |.+|+......+. ++. .-..+...-...|+...+..+|...+..+....+.. |...
T Consensus 132 arli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQ 208 (411)
T KOG1463|consen 132 ARLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQ 208 (411)
T ss_pred HHHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHH
Confidence 356667777777 8888877666553 222 223455556778888888888877777666543321 2222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhh---hhhHHHHHHHcCCHHHHHHHH--HHHHHhCCCcHHHH
Q 001509 306 -HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTNF--EKVLEIYPDNCETL 379 (1065)
Q Consensus 306 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~ 379 (1065)
..-..-|..+....+|..|..||-.+.+.+..-...+.+ +-.+-.|-+..+..++--.++ ..+++.......++
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Am 288 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAM 288 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHH
Confidence 222334666777789999999999998766533332232 233344445556666544433 44555555567888
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 001509 380 KALGHIYVQL--GQIEKAQELLRKAAKIDP 407 (1065)
Q Consensus 380 ~~la~~~~~~--g~~~~A~~~~~~al~~~p 407 (1065)
...+..+.+. .+|+.|+.-|..-+..+|
T Consensus 289 kavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 289 KAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 8888877654 467888888877666554
No 305
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.37 E-value=1.9 Score=43.73 Aligned_cols=214 Identities=13% Similarity=0.110 Sum_probs=129.1
Q ss_pred cCChHHHHHHHHHHHHHCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChH-HHHHhhhhhcccc
Q 001509 515 IHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN-----GKYPN-ALSMLGDLELKND 584 (1065)
Q Consensus 515 ~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-~~~~l~~~~~~~g 584 (1065)
...+++|+..|+++++..+.- ..++-.+..+++..|++.+-+..|.+++..- .+..+ ....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 358899999999999988765 4577788889999999999998888876532 11111 1111111112223
Q ss_pred chHHHHHHHHHhhh---cCCCCCh--HHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc---------
Q 001509 585 DWVKAKETFRAASD---ATDGKDS--YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--------- 650 (1065)
Q Consensus 585 ~~~~A~~~~~~al~---~~~~~d~--~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--------- 650 (1065)
+..--..+|+..+. ....... .....||.+ |+.. +.|.+-..+++++-.....
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl-~fd~------------~e~~kl~KIlkqLh~SCq~edGedD~kK 186 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKL-YFDR------------GEYTKLQKILKQLHQSCQTEDGEDDQKK 186 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhh-heeH------------HHHHHHHHHHHHHHHHhccccCchhhhc
Confidence 33333344444333 1111111 244578888 8888 7777766666665443111
Q ss_pred ---chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 651 ---NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 651 ---~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
-...+..-.++|..+.+-..-..+|++++...+.-++|-. ..+.-.=|..+++.|+|.+|-.-|=.|++.+.....
T Consensus 187 GtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs 266 (440)
T KOG1464|consen 187 GTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 266 (440)
T ss_pred cchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence 1122233356777888888888899999887654333221 122233356688889999999999888887644333
Q ss_pred ---HHH--HHHHHHHHHHhh
Q 001509 727 ---AQI--LLYLARTHYEAE 741 (1065)
Q Consensus 727 ---~~~--~~~lg~~~~~~g 741 (1065)
... +.-|+..+.++|
T Consensus 267 pRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 267 PRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cchhHHHHHHHHHHHHHHcC
Confidence 222 333455555543
No 306
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.35 E-value=0.16 Score=51.63 Aligned_cols=96 Identities=11% Similarity=0.181 Sum_probs=64.9
Q ss_pred cCCcHHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HHhcCCC----cHHHHH
Q 001509 665 KGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL-------RKFYYNT----DAQILL 731 (1065)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~~~~~----~~~~~~ 731 (1065)
...+++|+..|.-++-... +......+.++..+||+|..+|+.+....++++|+ .....+. ...+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3456666666666554432 11111346688899999999998655555555544 4322222 278899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 732 YLARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 732 ~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
.+|.+.++.|++++|..+|.+++...-.+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999865443
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.32 E-value=0.071 Score=40.01 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
+.++++|..+++.|++.+|+.+...+++..|+|..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4689999999999999999999999999999998776
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.22 E-value=0.75 Score=43.44 Aligned_cols=136 Identities=12% Similarity=0.050 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHhhCCcc--hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHH
Q 001509 632 THLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 709 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 709 (1065)
+..++|+.-|..+-+..-.+ +.+....+.+..+.|+...|+..|..+-.-.|-+.. -.-.+.+.-+.++...|-|++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-GRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHHHhccccHHH
Confidence 66778888887776655442 456677789999999999999999998776542110 112345566778889999998
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 001509 710 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 710 A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
-....+... ...++....+.-.||.+-++.|++.+|...|..+.. +.+.|....+-|.+
T Consensus 151 V~srvepLa-~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 151 VSSRVEPLA-GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHhhhcc-CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 877766533 222333467778899999999999999999998877 33334444444443
No 309
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=8.1 Score=43.80 Aligned_cols=238 Identities=15% Similarity=0.020 Sum_probs=137.0
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 572 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 572 (1065)
..|..+...+..+..+...|+.+.|+.++...+. +.. .-.++.++.++.-..+|..|...+..+...+.-..-.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~ 339 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF 339 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence 4456777778888888888887777787777765 222 3366777888888888888888888887776544444
Q ss_pred HHHhh-hhhccc--------cchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHH
Q 001509 573 LSMLG-DLELKN--------DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 643 (1065)
Q Consensus 573 ~~~l~-~~~~~~--------g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 643 (1065)
|..++ -|++.. |+-+.|..+++.... +... .. ++...++.-..++.++-.+
T Consensus 340 Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~-----------------l~~~--a~-K~~P~E~f~~RKverf~~~ 399 (546)
T KOG3783|consen 340 YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE-----------------LLAN--AG-KNLPLEKFIVRKVERFVKR 399 (546)
T ss_pred HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH-----------------HHHh--cc-ccCchhHHHHHHHHHHhcc
Confidence 44443 444332 233333333332211 1110 00 1111111223333333222
Q ss_pred HHhhCCcchHH--HhHHHHHHHhc--CCcHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 644 VIVQHTSNLYA--ANGAGVVLAEK--GQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCL 718 (1065)
Q Consensus 644 ~l~~~p~~~~a--~~~la~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 718 (1065)
.- .++..+.+ +..++.++..- ...++.. -+...++ .|....+ +..-.++.+|.++..+|+...|..+|..++
T Consensus 400 ~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~-~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 400 GP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELE-NPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred cc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHh-ccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 22333222 23444443321 1222222 1122222 2222111 222356788999999999999999999999
Q ss_pred HHhcCCC-c----HHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhCCC
Q 001509 719 RKFYYNT-D----AQILLYLARTHYEAEQ-WQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 719 ~~~~~~~-~----~~~~~~lg~~~~~~g~-~~~A~~~~~kal~~~P~ 759 (1065)
+.....+ + |-++|.+|..++..|. ..+|..++.+|.....+
T Consensus 477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 6532222 2 8899999999999999 99999999999887743
No 310
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.02 E-value=0.26 Score=42.18 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHcCC
Q 001509 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~ 212 (1065)
+..+++.+..+|++..+.+.+|..+...|++++|+..+-.+++.+++. ...++-.+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666677777777777777777777777777777666666554 23334444444444444
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.70 E-value=0.14 Score=38.43 Aligned_cols=40 Identities=23% Similarity=0.059 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1065)
.++.+|..++..|+|.+|..+++.+++..|+|..+.....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4566677777777777777777777777777766655443
No 312
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.70 E-value=0.34 Score=42.45 Aligned_cols=45 Identities=24% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001509 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1065)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (1065)
+++.+.++..+.|..+..++.+|.-+-....|.++..-.++++..
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 445555555555555666666666555555566666665555544
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.66 E-value=0.43 Score=45.08 Aligned_cols=99 Identities=15% Similarity=0.029 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163 (1065)
Q Consensus 84 ~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (1065)
..+..+..+-+..+... .+..++.-+--+.|..+..-+.-|.+++..|+|.+|+..|+.+....|..+.
T Consensus 11 ~gLie~~~~al~~~~~~-----------D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPD-----------DAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHccCChH-----------HHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 34444455555555444 8888898888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
+--.++.|++..|+..== .+-..++...++
T Consensus 80 ~kALlA~CL~~~~D~~Wr-~~A~evle~~~d 109 (160)
T PF09613_consen 80 AKALLALCLYALGDPSWR-RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHHcCChHHH-HHHHHHHhcCCC
Confidence 999999999988886432 223344444443
No 314
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.39 E-value=15 Score=43.89 Aligned_cols=117 Identities=18% Similarity=0.055 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN---RGRYSDSLEF 184 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~Al~~ 184 (1065)
+.-+.=+..+..-+.+++.+...++.+..++...|++++-...-..+..+.|.++..|+....-... .+.-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3444556667777778888888888888888999998887777777777888888887766554333 3667778888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHh
Q 001509 185 YKRALQVHPSCPGAIRLGIGLCRYKL-------GQLGKARQAFQRALQL 226 (1065)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~ 226 (1065)
|.+++.-.-.. .+|...+..+... ++++.-...|.+++..
T Consensus 173 ~ekal~dy~~v--~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 173 FEKALGDYNSV--PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHhcccccc--hHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 88887644332 3355555444433 4566667777777654
No 315
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.32 E-value=0.63 Score=42.07 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 161 NVPALLGQACVEFNRGR---YSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~---~~~Al~~~~~al~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1065)
.....+.+|+++....+ ..+.+.+++.+++ ..|.......+.++..++++++|+.++.+....++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35667888888877644 5678888888886 6676666778889999999999999999999999999998887544
Q ss_pred HH
Q 001509 237 LA 238 (1065)
Q Consensus 237 la 238 (1065)
--
T Consensus 111 k~ 112 (149)
T KOG3364|consen 111 KE 112 (149)
T ss_pred HH
Confidence 33
No 316
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=94.25 E-value=0.0012 Score=49.95 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-----hcCCch
Q 001509 882 KLEDEQKRLRQQEEHFQRVKEQW-----RSSTPA 910 (1065)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~w-----~~~~~~ 910 (1065)
++.+..++|+.++++..+||||| ||+|+|
T Consensus 26 kkkRk~rlPK~~dp~~~PDPERWLP~~dRS~yrp 59 (59)
T PF08492_consen 26 KKKRKPRLPKNYDPGKTPDPERWLPKRDRSYYRP 59 (59)
T ss_pred hhcccCCCCCCCCCCCCCCccccCchhhhcccCC
Confidence 34555679999999999999999 888875
No 317
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.08 E-value=0.24 Score=50.78 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1065)
|..++|..+|..++.++|.++.+++.+|......+++-+|-.+|-+++.++|.|..++.+.+
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 33334555555555555555555555555444444455555555555555555544444433
No 318
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.08 E-value=0.37 Score=41.17 Aligned_cols=74 Identities=18% Similarity=0.082 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
.+..+.+.+..+|++..+.+.+|..++..|+++.|+..|-.+++.+++. ..+.-.+-.++-..|.-.....-|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4667888899999999999999999999999999999999999988765 4455555555555555443333333
No 319
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.08 E-value=4.8 Score=38.31 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=66.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHH
Q 001509 135 GQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYK 209 (1065)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la~~~~~ 209 (1065)
+.-+.+.+..++|+..|..+-+..-.+ ..+.+..|.+....|+...|+..|..+-.-.|.. ...+++.-+.++..
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 333445566666666666665543333 3345566666666666666666666665544332 12345555566666
Q ss_pred cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Q 001509 210 LGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1065)
.|-|+.-..-.+-+- ..+|--..+.-.||...++.|+ +..|...|..+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 666665544443321 1233334445555555555555 5555555555443
No 320
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=1.6 Score=50.84 Aligned_cols=8 Identities=63% Similarity=0.954 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001509 865 EARRKAEE 872 (1065)
Q Consensus 865 ~~~~~~~e 872 (1065)
+.++++++
T Consensus 247 Eer~~ee~ 254 (1064)
T KOG1144|consen 247 EERRREEE 254 (1064)
T ss_pred HHHHHHHH
Confidence 33333333
No 321
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.98 E-value=2.1 Score=37.70 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=65.5
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC----Cc--
Q 001509 660 VVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN----TD-- 726 (1065)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~-- 726 (1065)
.-....|.|++|...+.++.+....-+.. -+.-++-.|+..+..+|+|++++..-..+|..|... .+
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 33445577777777777777665321000 134466677888999999999999999999877432 22
Q ss_pred ---HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 001509 727 ---AQILLYLARTHYEAEQWQDCKKSLLRAIHL 756 (1065)
Q Consensus 727 ---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 756 (1065)
..+.+.-+.++...|+.++|+..|+.+-+.
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 445566788889999999999999987653
No 322
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.88 E-value=0.11 Score=35.55 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKI 153 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~ 153 (1065)
|..+|.+|...|+|++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.67 E-value=0.56 Score=46.21 Aligned_cols=105 Identities=10% Similarity=0.170 Sum_probs=84.3
Q ss_pred hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc----H
Q 001509 652 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----A 727 (1065)
Q Consensus 652 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~ 727 (1065)
..++..+|..|...|+++.|+..|.++++...+.. ...++++++..+.+..|++.....+..++-.......+ .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 35788999999999999999999999988664322 35678899999999999999999999998876544444 3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAP 758 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P 758 (1065)
.+-.+-|..+...++|..|...|-.+..-..
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 4455678888889999999999877765544
No 324
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=19 Score=42.44 Aligned_cols=252 Identities=14% Similarity=0.123 Sum_probs=131.9
Q ss_pred HcCChHHHHHHHHHHHHHC--CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH-HHhhhhhccccch
Q 001509 514 QIHDTVAASVLYRLILFKY--QD----YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL-SMLGDLELKNDDW 586 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~--p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~ 586 (1065)
..|+..+|..++.-.+-.. |. ...+++.+|.++...|.- ..+++...+....+..-.+ ..||.-+..+|.-
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 4577888888777766442 11 134788888888777765 7778877777655333222 1344444444432
Q ss_pred HHHHHHHHHhhh---cCCC-CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHH-HHHHHHhhCCcchHHHhHHHHH
Q 001509 587 VKAKETFRAASD---ATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE-LYTRVIVQHTSNLYAANGAGVV 661 (1065)
Q Consensus 587 ~~A~~~~~~al~---~~~~-~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~a~~~la~~ 661 (1065)
. .+.|+++-. .... .-..+-+.||-+ .... . -.+|++ ++.-+-+.....+.--.++|..
T Consensus 447 ~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~-mlGt------------~-~~eaiedm~~Ya~ETQHeki~RGl~vGia 510 (929)
T KOG2062|consen 447 N--EEIYEKLKEVLYNDSAVSGEAAGIAMGLL-MLGT------------A-NQEAIEDMLTYAQETQHEKIIRGLAVGIA 510 (929)
T ss_pred c--HHHHHHHHHHHhccchhhhhHHHHhhhhH-hhCc------------C-cHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Confidence 1 233333322 2111 111234455544 2222 1 223333 2222222222334444566777
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHH
Q 001509 662 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYE 739 (1065)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~lg~~~~~ 739 (1065)
+.--|+-++|-.+.++++.-. .+. -...-.+.+|..|...|+..--...+.-++.. .+.| ..+-..+|.+++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpi--lR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~- 584 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPI--LRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLF- 584 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chh--hhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEe-
Confidence 777788888888888876532 100 11234567888888888876655555555433 1222 223334454443
Q ss_pred hhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Q 001509 740 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 808 (1065)
Q Consensus 740 ~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~ 808 (1065)
.+++.+..+..-+-+- -|+.++|..|+++-. -.|=.++.+|+.++.-+-.
T Consensus 585 -~dp~~~~s~V~lLses--~N~HVRyGaA~ALGI----------------aCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 585 -RDPEQLPSTVSLLSES--YNPHVRYGAAMALGI----------------ACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred -cChhhchHHHHHHhhh--cChhhhhhHHHHHhh----------------hhcCCCcHHHHHHHhhhhc
Confidence 4566666655544333 367777777765432 2223356666666666654
No 325
>PRK10941 hypothetical protein; Provisional
Probab=93.66 E-value=0.52 Score=49.62 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=38.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
+-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.+.|.+..|+..++..+...|++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 44455566666666666666666666666666666666666666666666666666666665
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.63 E-value=0.73 Score=42.73 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
++.....-+..++++.+..++..+--+.|+.+..-..-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|++.+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhc
Confidence 34444445557788888888887777788888888888888888888888888888887777666 55566777787777
Q ss_pred CCH
Q 001509 211 GQL 213 (1065)
Q Consensus 211 g~~ 213 (1065)
|+.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 764
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.62 E-value=0.37 Score=47.49 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1065)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1065)
.++..+|.+|...|+++.|++.|.++...........+.++.+.++.+..+++.....++.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555666666666666665555554433344455555555555666666655555555544
No 328
>PRK10941 hypothetical protein; Provisional
Probab=93.31 E-value=0.81 Score=48.19 Aligned_cols=74 Identities=16% Similarity=0.000 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1065)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1065)
+.++-.++...+++..|+.+.+.++.+.|++ +.-+--.|.+|.++|.+..|...++..++..|+++.+......
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPED-PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3445556777788888888888888888887 4446667888888888888888888888888877766544433
No 329
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=20 Score=41.06 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHHH------------HCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----C------------
Q 001509 516 HDTVAASVLYRLILF------------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----N------------ 566 (1065)
Q Consensus 516 g~~~~A~~~~~~al~------------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~------------ 566 (1065)
.-|++|...|.-+.. .+|-+++.++.++.+...+|+.+.|..++.+++=. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 445566666665554 34566889999999999999999988888877642 1
Q ss_pred ----CCChHHHH---HhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHH
Q 001509 567 ----GKYPNALS---MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 639 (1065)
Q Consensus 567 ----p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 639 (1065)
|.+..+|. .......+.|-|..|.++.+-+++..|..|+++...+.++ |.-.+ .+|.=-+.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI~ 399 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWIIE 399 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHHH
Confidence 22333332 2333445678899999999999999999899988888887 54331 66666666
Q ss_pred HHHHH-----HhhCCcchHHHhHHHHHHHhcCC---cHHHHHHHHHHHHHhc
Q 001509 640 LYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 640 ~~~~~-----l~~~p~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 683 (1065)
+++.. +..-|+-.+ -..+|..|..... -..|...+.+++...|
T Consensus 400 ~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 400 LSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 66554 334455433 2345666665544 5678888888888765
No 330
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.08 E-value=0.31 Score=50.08 Aligned_cols=69 Identities=28% Similarity=0.424 Sum_probs=46.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
|.-....|+.+.|..+|..++.+.|.+ +.++..+|......++.-+|-.+|-+++.++|.+..++.+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~-p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTN-PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCC-HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 334456667777777777777777777 556666776666666677777777777777777766665554
No 331
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.05 E-value=3.5 Score=36.43 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=31.0
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC------------hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE------------PSTWVGKGQLLLAKGEVEQASSAFKIVL 155 (1065)
Q Consensus 89 La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~------------~~~~~~~g~~~~~~g~~~~A~~~~~~al 155 (1065)
.+..|+.++.-+ +...++.|.+|...+.++.....+- ...+..++..+...|+|++++.....++
T Consensus 6 Va~aY~aLs~ae--~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 6 VAMAYMALSDAE--RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHH--HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344454444333 2234566667777777665443221 1234445555555566655555444443
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.86 E-value=18 Score=40.05 Aligned_cols=120 Identities=13% Similarity=0.009 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1065)
+..|-..+..++...|..|......+.++...|.|+.+...+..+-.... ....+...+-+..+.+|+++.|...-.
T Consensus 305 ~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~---s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 305 IIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG---TTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc---CCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 66666666677777777777777777777777777777666654433221 122455556667777888888877766
Q ss_pred HHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
-++. +.-....+...-+-....+|-++++..++.+++.++|..
T Consensus 382 ~~l~---~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 382 MMLS---NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHhc---cccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 6654 222222333333444455677788888888888777653
No 333
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=92.53 E-value=18 Score=42.27 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=14.2
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 001509 656 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 656 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
+++..+++.-|.|.+ |.++...+|
T Consensus 750 FGlTKVFFr~GKFaE----FDqiMksDP 773 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFAE----FDQIMKSDP 773 (1259)
T ss_pred ccceeEeecCcchHH----HHHHHhcCH
Confidence 555566667777654 555555554
No 334
>PRK12798 chemotaxis protein; Reviewed
Probab=92.48 E-value=20 Score=39.64 Aligned_cols=176 Identities=16% Similarity=0.027 Sum_probs=119.1
Q ss_pred ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhC
Q 001509 569 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 648 (1065)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 648 (1065)
+.+....-|.+-+-.|+..+|.+.+..+....-+.....++.|...+.+.. .+..+|+.+|..+--.-
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLla 178 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLA 178 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhC
Confidence 344444555555667888888888776655443334444444443322333 77888999999888888
Q ss_pred Ccch--HHHhHH-HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Q 001509 649 TSNL--YAANGA-GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 725 (1065)
Q Consensus 649 p~~~--~a~~~l-a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 725 (1065)
|... .+.... ..+....|+.+++..+-.+.+..+..|.|..+..-.|..+.+-+. .+. -...+..++..+....
T Consensus 179 PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~-d~~--~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 179 PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD-DEI--RDARLVEILSFMDPER 255 (421)
T ss_pred CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc-ccc--cHHHHHHHHHhcCchh
Confidence 8843 344444 444468899999999999999999887776555555554444333 222 2233666666654444
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 726 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 726 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
...+|..+++.-.-.|+.+-|.-.-.+++.+...
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~ 289 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADP 289 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC
Confidence 5789999999999999999999999999999744
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.47 E-value=0.21 Score=32.43 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
+++.+|.++...|+++.|...|..+++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666555543
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.39 E-value=0.22 Score=32.34 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 693 VWINLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 693 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
+++++|.++..+|+++.|+..|+.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555555555555555555555555544
No 337
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.14 E-value=1.9 Score=43.91 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHhh------CCc-chHHHhHHHHHHHhcCCc-------HHHHHHHHHHHHHhcCCC-CCcchHHHHH
Q 001509 632 THLEKAKELYTRVIVQ------HTS-NLYAANGAGVVLAEKGQF-------DVSKDLFTQVQEAASGSV-FVQMPDVWIN 696 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~------~p~-~~~a~~~la~~~~~~g~~-------~~A~~~~~~~~~~~p~~~-~~~~~~~~~~ 696 (1065)
..++.|++.|.-++-. .|. -...+..+|++|-..|+. ..|+..|.++.+....+. ..+...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 4556666666555432 221 356778889999998874 555555666655443211 1244678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001509 697 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 737 (1065)
Q Consensus 697 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~ 737 (1065)
+|.+..+.|++++|+.+|.+++..-..+. +..+..+++-.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s~-~~~l~~~AR~~ 210 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKASK-EPKLKDMARDQ 210 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCCC-cHHHHHHHHHH
Confidence 99999999999999999999998633333 34555555443
No 338
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=19 Score=38.35 Aligned_cols=110 Identities=21% Similarity=0.076 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCh-
Q 001509 503 TVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-----GKYP- 570 (1065)
Q Consensus 503 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~- 570 (1065)
..-..++.+|...++|.+|+.+....+.. .+.-++.+..-...|....+...|...+..+-... |...
T Consensus 129 ~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQ 208 (411)
T KOG1463|consen 129 SLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQ 208 (411)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHH
Confidence 34456888999999999999888777652 12335666777778888899999888887775532 2221
Q ss_pred -HHHHHhhhhhccccchHHHHHHHHHhhhcCCCC--ChHHHHhhH
Q 001509 571 -NALSMLGDLELKNDDWVKAKETFRAASDATDGK--DSYATLSLG 612 (1065)
Q Consensus 571 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--d~~~~~~lg 612 (1065)
.+-..-|.++..-.+|..|..+|-.+.+.+..- +..+..+|-
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLK 253 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLK 253 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHH
Confidence 233345777777889999999999999866542 234444443
No 339
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.02 E-value=18 Score=38.06 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=45.2
Q ss_pred chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
....-+.+-+...+..+...-++....+++++|.+..++..++.--. .-..+|..+++++++.
T Consensus 183 ~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 183 FLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKA 245 (556)
T ss_pred ccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHH
Confidence 33444556666777778888888888899999998888888775332 2456777777777764
No 340
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.96 E-value=10 Score=43.53 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=46.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HcCCCCCHHHH
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK-KAGEEVPIEVL 428 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~-~~~~~~~~~~~ 428 (1065)
..++..|.+++|...----+. ..-|..|+.-....=+++-|...|.++-.+. --.....+-. +.....|-+++
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~-~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLR-YLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccH-HHHHHHHHHHHHhcCCCchHHH
Confidence 445666666666443211111 1234455555555556666666666543221 0000111111 11122233333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 001509 429 NNIGVIHFEKGEFESAHQSFKDA 451 (1065)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~a 451 (1065)
++.++.-.|++.+|..+|.+.
T Consensus 638 --lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 638 --LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred --HHHHHHhhhhHHHHHHHHHHc
Confidence 467777788888888888764
No 341
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=91.70 E-value=1.3 Score=51.36 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001509 824 THVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 861 (1065)
Q Consensus 824 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~~~~~ 861 (1065)
.+++....+|.+.++.-+++++++++...+.++.++.+
T Consensus 214 Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ 251 (1064)
T KOG1144|consen 214 KGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRR 251 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444444444333444444443
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.70 E-value=27 Score=39.35 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=133.7
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhh
Q 001509 499 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 578 (1065)
Q Consensus 499 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 578 (1065)
|.+...+..+..++....+..--..++.+++... .+--+++.++.+|... ..+.-..++++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344555566666666666666667777777654 4467888999999988 5567788899999999888888888888
Q ss_pred hhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcc--hHHHh
Q 001509 579 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN--LYAAN 656 (1065)
Q Consensus 579 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~a~~ 656 (1065)
.|.+ ++...+..+|.+++...-+....+ .+-.+ +.+....-. .+.+.-+....++-...... ..++.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~--~i~ev-WeKL~~~i~-------dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNA--AIKEV-WEKLPELIG-------DDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhh--hHHHH-HHHHHHhcc-------ccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 8777 888999999999876432211110 11111 222211000 23333333333333222221 11222
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001509 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 736 (1065)
Q Consensus 657 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~ 736 (1065)
.+-.-|....++.+|+.++..+++.+. .+..+.-++...+.. ++......+-|.....+
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~-----k~~~ar~~~i~~lRd----------------~y~~~~~~e~yl~~s~i 268 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDE-----KDVWARKEIIENLRD----------------KYRGHSQLEEYLKISNI 268 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcc-----hhhhHHHHHHHHHHH----------------HhccchhHHHHHHhcch
Confidence 222334455677777777777776653 233333333222211 22223333334444444
Q ss_pred HHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 737 HYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 737 ~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
-..-.++.+|..-|.+.++.+..|-..+
T Consensus 269 ~~~~rnf~~~l~dFek~m~f~eGnFVfH 296 (711)
T COG1747 269 SQSGRNFFEALNDFEKLMHFDEGNFVFH 296 (711)
T ss_pred hhccccHHHHHHHHHHHheeccCceEEe
Confidence 4455677889999999999988875543
No 343
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.63 E-value=0.41 Score=49.35 Aligned_cols=90 Identities=10% Similarity=0.172 Sum_probs=70.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE 229 (1065)
Q Consensus 151 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1065)
|.+.....|+++..|...+......|-|.+--..|.+++..+|.+ ...|.. .+.-+...++++.+...|.++++.+|.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 344445567888888888888888888888888999999999988 555554 566677888999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 001509 230 NVEALVALAVMD 241 (1065)
Q Consensus 230 ~~~a~~~la~~~ 241 (1065)
++..|...-.+.
T Consensus 175 ~p~iw~eyfr~E 186 (435)
T COG5191 175 SPRIWIEYFRME 186 (435)
T ss_pred CchHHHHHHHHH
Confidence 888877655443
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.60 E-value=7.5 Score=36.30 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1065)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1065)
.+......-...++..++..++..+--+.|+. ..+.+.-|.++...|++.+|+..|+.+....+..+.+.-.++.++..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~-~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNL-KELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-cccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 44455555566888888888888888888888 66678888888888888888888888887777777777777777777
Q ss_pred ccc
Q 001509 244 ANE 246 (1065)
Q Consensus 244 ~~~ 246 (1065)
.|+
T Consensus 91 l~D 93 (153)
T TIGR02561 91 KGD 93 (153)
T ss_pred cCC
Confidence 776
No 345
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=4.2 Score=46.36 Aligned_cols=128 Identities=23% Similarity=0.156 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-H
Q 001509 112 LATQYYNKASRIDMHEPSTWVG--KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-A 188 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~--~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-a 188 (1065)
-++..+...+.++|.++..++. +...+...+....+.-.+..++..+|.+..+...+|.+....|....++..+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3566666667788888876544 477777788888999999999999999999999999988888777766666555 7
Q ss_pred HHhCCCCchHHHH------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 189 LQVHPSCPGAIRL------GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 189 l~~~p~~~~~~~~------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
....|.+ ..... .++..+..+|+..++.....+++.+.|.++.....+...
T Consensus 129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 7778887 33333 357777888888888899999999988886654444433
No 346
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.45 E-value=32 Score=39.82 Aligned_cols=278 Identities=15% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHh
Q 001509 503 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576 (1065)
Q Consensus 503 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 576 (1065)
.++.+-|.-..+..+|..++++|...+...|.+ ......++.||....+.+.|.++++++-+.+|.++.....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Q ss_pred hhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc---chH
Q 001509 577 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS---NLY 653 (1065)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~ 653 (1065)
..+...-+.-.+|+.....................+.- +...--+.++....-.+.. ...
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~-----------------~~PTt~lsv~~~l~~~n~Q~I~sE~ 497 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAE-----------------CKPTTDLSVQGLLMIFNSQTISSES 497 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhcccccchhHHHHhc-----------------CCCchHHHHHHHHHHHhcchhhhcc
Q ss_pred HHhHHHHHHHhcCCcHHHHHHHHHHHH-------HhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 654 AANGAGVVLAEKGQFDVSKDLFTQVQE-------AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 654 a~~~la~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
+...+++.+..+-...-|.+..-.++- ... +...-+..+-.|+-+.---.-....|+.=.......--
T Consensus 498 ~~~~l~~~~~~q~~v~~~~~e~L~F~L~~~~~~~~~~-----~ka~e~~~~~~Cln~~~~~~FGe~~~~~E~~~nE~~WF 572 (872)
T KOG4814|consen 498 SSQTLSILYTLQMIVKVSEEEPLEFFLNYLPTVQKLL-----QKAVEFLKTVKCLNQLPPDVFGEAIYQQEVAVNEIEWF 572 (872)
T ss_pred hHHHHHHHhHHHHHHHHHHHhHHHHHHhhccchhHHH-----HHHHHHHHHHHHHhhcCCchhhhHHHHHHhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CCCCc------chHHHHHHHhhHHHH-HHHhhhcCCHHHHHHHHHHH
Q 001509 727 AQILLYLARTHYEAEQWQDCKKSLLRAIHL---APSNY------TLRFDAGVAMQKFSA-STLQKTRRTADEVRSTVAEL 796 (1065)
Q Consensus 727 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~---~P~~~------~~~~nla~~~~~~~~-~~l~~~~~~~~~~~~a~~~l 796 (1065)
..+-..||.-+.+-..++-..++++-+.+. -|.|. .++--.+++++-... +.-.+..-+-++..-+-..|
T Consensus 573 a~T~WNLav~C~Kd~~~e~~~EF~~L~~~f~~~ip~D~~~~~~~~I~R~~~L~~~~~IaLEk~~K~~~~~~Q~~~~se~L 652 (872)
T KOG4814|consen 573 ASTSWNLAVKCLKDQSCESISEFPQLCIQFIDLIPVDDFTMYHFTIWRFKALILQLIIALEKAKKDQHQKDQDIYESEEL 652 (872)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHccCCcccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q ss_pred HHHHHH
Q 001509 797 ENAVRV 802 (1065)
Q Consensus 797 ~~a~~~ 802 (1065)
.+.+.+
T Consensus 653 ~~s~~~ 658 (872)
T KOG4814|consen 653 VNSINV 658 (872)
T ss_pred Hhhhhh
No 347
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.45 E-value=1.5 Score=37.90 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=47.7
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcH
Q 001509 663 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 727 (1065)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 727 (1065)
...|++..|++.+.+..+....+.... ...+++++|.++...|++++|+..++.+++......|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 356888888888888777665432211 24567788888889999999999999998877666663
No 348
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.29 E-value=22 Score=37.57 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCChHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLE 183 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--~la~~~~~~g~~~~Al~ 183 (1065)
+..-...|+.+- +.-...-.+|..+..+|..++..|++..|..+|-.. +++.+.. .+-
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll-------------- 128 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLL-------------- 128 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHH--------------
Confidence 344455666665 333333356788888888888888887777766422 1111111 111
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC----------C-HHH-HHHHHHHHHHccch
Q 001509 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL----DPE----------N-VEA-LVALAVMDLQANEA 247 (1065)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~----------~-~~a-~~~la~~~~~~~~~ 247 (1065)
+.......|.............|..+++...|...+...++. .|. . +.. ...+-...+..++.
T Consensus 129 -~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~ 207 (260)
T PF04190_consen 129 -EEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNL 207 (260)
T ss_dssp -HHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-H
T ss_pred -HHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcH
Confidence 111222334442222333344577889999888877766655 332 2 211 11122222333333
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1065)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1065)
..+..-...|...++.+|.....+..+|..||..
T Consensus 208 ~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 208 PLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHHHTHH---HHHHTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCccccccHHHHHHHHHHHHHHCCC
Confidence 3345555555655666666666677777777653
No 349
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.64 E-value=20 Score=41.39 Aligned_cols=180 Identities=16% Similarity=0.076 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCchHHHHHHHH
Q 001509 132 VGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGL 205 (1065)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~ 205 (1065)
+.++..+...|++.+|..+|.+.-..+.. ...-++-.+.-+...|..++-..+.++-..-. -+.|. ..+.
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk----aAAE 711 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK----AAAE 711 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH----HHHH
Confidence 45677777778888888777653211100 01123445555666666665555444432221 11111 2356
Q ss_pred HHHHcCCHHHHHHHHH----------HHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 206 CRYKLGQLGKARQAFQ----------RALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1065)
Q Consensus 206 ~~~~~g~~~~A~~~~~----------~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 275 (1065)
++...|+..+|+...- -+-+++....+.+..++..+..... +--|-+.|.++-. ...+.
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~---~gLAaeIF~k~gD--------~ksiV 780 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS---PGLAAEIFLKMGD--------LKSLV 780 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc---cchHHHHHHHhcc--------HHHHh
Confidence 6677777777765331 1122222333333333333333322 2333333332211 11233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1065)
.++...++|.+|..+.++. +.....+|+..|+.+....+|++|.+.|.++.
T Consensus 781 qlHve~~~W~eAFalAe~h------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKH------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hheeecccchHhHhhhhhC------ccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 4455566666666655543 22334566666666666666666666555543
No 350
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.48 E-value=0.7 Score=51.24 Aligned_cols=89 Identities=18% Similarity=0.107 Sum_probs=51.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHH
Q 001509 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (1065)
..+.+..|+..|.+++...|.....+...|.++.+. |+.-.|+.....+++++|.. ..+++.++.++..++.+.+|
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHh
Confidence 334455566666666666666666666665555554 33444555555566666655 44566666666666666666
Q ss_pred HHHHHHHHHhCCC
Q 001509 217 RQAFQRALQLDPE 229 (1065)
Q Consensus 217 ~~~~~~al~~~p~ 229 (1065)
+.+...+....|.
T Consensus 465 l~~~~alq~~~Pt 477 (758)
T KOG1310|consen 465 LSCHWALQMSFPT 477 (758)
T ss_pred hhhHHHHhhcCch
Confidence 6666555555553
No 351
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.39 E-value=26 Score=36.93 Aligned_cols=193 Identities=15% Similarity=0.065 Sum_probs=102.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1065)
+.+....++..+...-+..-..+++++|....+++.|+.-.... +.+|...++++++....+ +.-.+....
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~----yr~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETI----YRQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHH----HhhHHHHhh
Confidence 44556667777777788888888999999998888888655544 777888888877653211 111111111
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHH
Q 001509 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1065)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1065)
.|...+|.. +. +......+-..++.|..++|+..+|++.+....+.++. .....++-++...+....-|..
T Consensus 259 ~~~~~da~~------rR--Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQL------RR--DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhhh------hc--ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110 00 01112234456888889999999999999888874431 1111223334444444433333
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHH-------------HcC---CHHHHHHHHHHHHHhCCCcHH
Q 001509 361 ALTNFEKVLEI-YPDNCETLKALGHIYV-------------QLG---QIEKAQELLRKAAKIDPRDAQ 411 (1065)
Q Consensus 361 A~~~~~~~l~~-~p~~~~~~~~la~~~~-------------~~g---~~~~A~~~~~~al~~~p~~~~ 411 (1065)
...++-+.-.+ -|.+....+.-+.+-. +.| --..|++.+.++.+.+|.-+.
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcH
Confidence 22222222111 1333222222221111 111 123578888899999998775
No 352
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.32 E-value=27 Score=36.93 Aligned_cols=140 Identities=14% Similarity=0.024 Sum_probs=71.8
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHh
Q 001509 499 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576 (1065)
Q Consensus 499 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 576 (1065)
..++..+..+|..|.+.|++.+|..+|-.. ++...... +... ....-.|.....+...
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~---------------~~~~~~~~e~dlfi~R 146 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEE---------------WSTKGYPSEADLFIAR 146 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHH---------------HHHHTSS--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHH---------------HHHhcCCcchhHHHHH
Confidence 347889999999999999999888777532 22222211 1111 1122334445555544
Q ss_pred hh-hhccccchHHHHHHHHHhhhc----CCC--------CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHH
Q 001509 577 GD-LELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 643 (1065)
Q Consensus 577 ~~-~~~~~g~~~~A~~~~~~al~~----~~~--------~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 643 (1065)
+. -|+..++...|...+....+. .|. ...+.+++...+ ......... ...+..-.+.|+.
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~~ 219 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYKP 219 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhCc
Confidence 44 355667888887766655543 221 122233333333 222211111 1456666666777
Q ss_pred HHhhCCcchHHHhHHHHHHHhc
Q 001509 644 VIVQHTSNLYAANGAGVVLAEK 665 (1065)
Q Consensus 644 ~l~~~p~~~~a~~~la~~~~~~ 665 (1065)
.|..+|.-...+..+|.+|+..
T Consensus 220 ~L~rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 220 SLKRDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp ---HHHHTHHHHHHHHHHHH--
T ss_pred cccccHHHHHHHHHHHHHHCCC
Confidence 7777777777788888888753
No 353
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=26 Score=38.51 Aligned_cols=163 Identities=9% Similarity=0.018 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 001509 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA------------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR- 177 (1065)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~------------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~- 177 (1065)
..++.+=.+.+..+|....+|..+-.++.. +.-++.-+.+...+++.+|+...+|..+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 367777778888899888777765433322 2235666777888899999999999999999887765
Q ss_pred -hHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------cc-
Q 001509 178 -YSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE- 246 (1065)
Q Consensus 178 -~~~Al~~~~~al~~~p~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~- 246 (1065)
+..=++++.++++.+|.+-..+.+..-.+-. ......+=+.+..+++.-++.|..+|.....+.... |.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 5788899999999999883332222222211 212255667788888888999999988877766532 20
Q ss_pred --hHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 247 --AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1065)
Q Consensus 247 --~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1065)
..-+..-+.....++-.+|++..+|+.
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 122445555666666667777666654
No 354
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=11 Score=43.13 Aligned_cols=134 Identities=16% Similarity=0.032 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 145 EQASSAFKIVLEADRDNVPALLG--QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1065)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (1065)
.-++..+...+..+|.++..++. +...+...+....+...+..++..+|.+ ..++..+|......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33566666666678888776544 3666777788889999999999999999 55678888887777777766666655
Q ss_pred -HHHhCCCCHHHHHHH------HHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 223 -ALQLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1065)
Q Consensus 223 -al~~~p~~~~a~~~l------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1065)
+....|.+......+ +.+....+. ..++...+.++....|.++.+...+.......-
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c 190 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLGALMTARQEQC 190 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhc
Confidence 888889888776655 555555566 777778888888888888777666655544333
No 355
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.08 E-value=0.46 Score=47.01 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=37.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001509 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1065)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1065)
....++.+.|.++|.+++.+.|.. ..-|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 445566666666666666666666 5556666666666666666666666666666654
No 356
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.95 E-value=26 Score=36.26 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHH-
Q 001509 309 YNLARSYHSKGDYEKAGLYYMASVKEIN---KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPDNCETL- 379 (1065)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~- 379 (1065)
..++.+++..|.|.+|+......+..+. +.+.....+..-..+|....+..++...+..+-.. .|....+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 3455666666777777666666554332 33444555555666666666666666555544322 12211111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 380 -KALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 380 -~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
..-|.+++...+|.-|..+|-.+++-
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhc
Confidence 12244445556677777777766654
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.91 E-value=0.7 Score=32.61 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 001509 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKF 721 (1065)
Q Consensus 692 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 721 (1065)
.++.++|.+|..+|++++|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467788888888888888888888888653
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.61 E-value=2.3 Score=34.60 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhhcHHHHHHHHHH
Q 001509 694 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLR 752 (1065)
Q Consensus 694 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~k 752 (1065)
...-|.-++.+.+..+|+..+.+++++.+++++ ..++-+|..+|...|++.+.+.+...
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566888999999999999998776665 67788889999999999998877543
No 359
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.28 E-value=60 Score=39.41 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLIL 529 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 529 (1065)
.....|.+|+.+...|+.++|..+|..+.
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55677788888777888888888888764
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.72 E-value=10 Score=43.39 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=63.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHH
Q 001509 136 QLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1065)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 214 (1065)
...+..|+++.+....... ..-|.- ..-....+..+..+|.++.|+.+... +..++.+ ..++|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~rFeL---Al~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDHRFEL---ALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHHHhHH---HHhcCCHH
Confidence 3444566777765555311 111211 23344555566666666666654321 2334433 34667776
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1065)
Q Consensus 215 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1065)
.|...... .+++..|..||...+..|+ ++-|..+|.++-. +..|..+|...|+.+...++...+
T Consensus 336 ~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 336 IALEIAKE-----LDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHCCC-----CSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHh-----cCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 66654432 3356677777777777777 6666666665422 234445555566655555554444
Q ss_pred H
Q 001509 295 L 295 (1065)
Q Consensus 295 l 295 (1065)
.
T Consensus 400 ~ 400 (443)
T PF04053_consen 400 E 400 (443)
T ss_dssp H
T ss_pred H
Confidence 3
No 361
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.70 E-value=0.83 Score=45.28 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
.....++.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|.+.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34456677777777777777777777777777777777777777777777777777766
No 362
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.54 E-value=0.74 Score=47.59 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=72.8
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
.|.++....|+++..|...+......|-|.+--..|.+++..+|.|+..|.. -+.-++..+++..+...|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444555678999999999998889999999999999999999999999977 556678889999999999999999999
Q ss_pred CchHHHH
Q 001509 195 CPGAIRL 201 (1065)
Q Consensus 195 ~~~~~~~ 201 (1065)
+ +.+|+
T Consensus 175 ~-p~iw~ 180 (435)
T COG5191 175 S-PRIWI 180 (435)
T ss_pred C-chHHH
Confidence 9 44444
No 363
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.93 E-value=2.7 Score=46.92 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1065)
......|+..|.+++...|.....+..++.+++.. |+.-.|+.-+-.+++++|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 44556899999999999999999999999888876 566778888888999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001509 184 FYKRALQVHPSC 195 (1065)
Q Consensus 184 ~~~~al~~~p~~ 195 (1065)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 999888888866
No 364
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.81 E-value=4.9 Score=50.37 Aligned_cols=150 Identities=16% Similarity=0.102 Sum_probs=117.8
Q ss_pred HHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 256 KMQ-RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1065)
Q Consensus 256 ~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1065)
.+. ....+.|.....+..|+.++...|++++|+....++.-. ....+.....+.+++...+..++...|+..+.
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLN 1039 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHH
Confidence 555 334567888999999999999999999999988877632 33457778889999999999999999999998
Q ss_pred HHHHhc-----CCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHH
Q 001509 330 ASVKEI-----NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLGQIEKAQ 396 (1065)
Q Consensus 330 ~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~ 396 (1065)
++.... +..|.......+++.++...+.++.|+.+++.++..+. .+...+..++.++...+++..|+
T Consensus 1040 ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1040 RALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred HHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH
Confidence 887643 24566677778899999999999999999999988532 13456667777777778887777
Q ss_pred HHHHHHHHh
Q 001509 397 ELLRKAAKI 405 (1065)
Q Consensus 397 ~~~~~al~~ 405 (1065)
...+....+
T Consensus 1120 ~~ek~t~~i 1128 (1236)
T KOG1839|consen 1120 EHEKVTYGI 1128 (1236)
T ss_pred HHHhhHHHH
Confidence 776665544
No 365
>PF12854 PPR_1: PPR repeat
Probab=87.35 E-value=1.2 Score=29.90 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 001509 38 APLDLWLIIAREYFKQGKVEQFRQILEEG 66 (1065)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~A~~~l~~~ 66 (1065)
++.-.|..+...|++.|++++|+++|+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45568999999999999999999999976
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=50 Score=36.23 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHhhCC---------cchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHH
Q 001509 632 THLEKAKELYTRVIVQHT---------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINLAHVY 701 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p---------~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~lg~~~ 701 (1065)
+.+++|..+-...+.... -....|+.+..++...|+...-...+...+.... ++...........|-..|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 778888877766554311 1233456666677777887776666666655443 111112223344456778
Q ss_pred HHcCCHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHH
Q 001509 702 FAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 765 (1065)
Q Consensus 702 ~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 765 (1065)
...+.|+.|-....+.. ||... .+..+|++|++..-+++|..|.++|-.|+...|++..+-|
T Consensus 220 L~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf 285 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGF 285 (493)
T ss_pred hhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhH
Confidence 88899999988866654 22221 2778899999999999999999999999999998655544
No 367
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.83 E-value=83 Score=38.22 Aligned_cols=316 Identities=9% Similarity=-0.020 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a 120 (1065)
..++.-|...++.|++..+..+...+...... ..+-+..+..+-.. ....-+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~--------------~yl~y~~L~~~l~~-----------~~~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLY--------------PYLEYRQLTQDLMN-----------QPAVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcH--------------hHHHHHHHHhcccc-----------CCHHHHHHH
Confidence 56788899999999999998888876332211 11222222111111 012244556
Q ss_pred hhcCCCChhhHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 001509 121 SRIDMHEPSTWVGKGQLLL---AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1065)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1065)
+..+|+.|..-..+..... ..+++..-+.+ ....|.+....+..+......|+-.+|......+....... +
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~----~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-p 163 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAF----SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-P 163 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh----cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-C
Confidence 6777888766655544433 34455544442 22347777777788888889999888877777765544332 1
Q ss_pred HHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHccchHhHHHHHHHHH
Q 001509 198 AIRLGI------------------GLCRYKLGQLGKARQAFQRALQLDPENVEALV-ALAVMDLQANEAAGIRKGMEKMQ 258 (1065)
Q Consensus 198 ~~~~~l------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~la~~~~~~~~~~~~~~A~~~~~ 258 (1065)
...-.+ ....+..|+...|......+ .+ ....+. .+..++. + ...+..
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l---~~-~~~~~a~a~~al~~---~---p~~~~~--- 230 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL---PA-DYQTIASALIKLQN---D---PNTVET--- 230 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc---Ch-hHHHHHHHHHHHHH---C---HHHHHH---
Confidence 212222 22233334444333332221 11 111100 0001100 0 111111
Q ss_pred HHHHhC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001509 259 RAFEIY-PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (1065)
Q Consensus 259 ~al~~~-p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 335 (1065)
.+... |... .....++..-+...+.+.|..++..........+ ....+...+|......+...+|..++..+....
T Consensus 231 -~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~ 309 (644)
T PRK11619 231 -FARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS 309 (644)
T ss_pred -HhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc
Confidence 11111 2211 1122333334456666778777776543322111 222334445544444433567777777654321
Q ss_pred CCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 336 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
......-....+.+..+++..+...+..+-..........+-+|..+...|+.++|..+|+++..
T Consensus 310 ----~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 310 ----QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ----CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 11122223334555788888887777776444445677888899998889999999999999754
No 368
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.81 E-value=0.3 Score=57.09 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=6.2
Q ss_pred HHHHHHHHHhh
Q 001509 798 NAVRVFSHLSA 808 (1065)
Q Consensus 798 ~a~~~~~~l~~ 808 (1065)
+|+..|.++..
T Consensus 1258 ~aIh~FD~ft~ 1268 (1516)
T KOG1832|consen 1258 EAIHRFDQFTD 1268 (1516)
T ss_pred HHHhhhhhhee
Confidence 55666665553
No 369
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=86.69 E-value=54 Score=35.98 Aligned_cols=105 Identities=17% Similarity=0.099 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh--CC--CcHH
Q 001509 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--YP--DNCE 377 (1065)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p--~~~~ 377 (1065)
+..|+.+..+|...|+...-..++...+.... ...........+-.+|+..+.|+.|-....+..-- .. ..+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 35677777778888876666666655554221 22223334555677888888888888777665411 11 2256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1065)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 409 (1065)
.++.+|.+..-+++|..|..++-.++...|..
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 77788999999999999999999999999873
No 370
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.56 E-value=4 Score=44.31 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHH
Q 001509 430 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509 (1065)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la 509 (1065)
.=|..++++++|..|..-|..++++|.....+........ -+.......+-..+.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~-------------------------~di~~vaSfIetklv 235 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASA-------------------------EDISSVASFIETKLV 235 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCh-------------------------hhHHHHHHHHHHHHH
Confidence 3366788899999999999999987754333322111000 000111233455788
Q ss_pred HHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 510 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 562 (1065)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 562 (1065)
.||..+++.+.|+....+.+..+|.++.-+++.|.++....+|.+|.+.+--+
T Consensus 236 ~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 236 TCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998887665543
No 371
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=86.45 E-value=8.5 Score=48.39 Aligned_cols=174 Identities=20% Similarity=0.197 Sum_probs=117.2
Q ss_pred hhhHHHHHHHcCCHHHHHH------HHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001509 345 YYGLGQVQLKLGDFRSALT------NFEKVL-EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK 417 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 417 (1065)
....|+.....|.+.+|.+ ++.... .++|.....+..++.++...|++++|+.+-.++.-+.....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~------- 1007 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL------- 1007 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc-------
Confidence 3445666677777777777 555333 45788899999999999999999999998877765432110
Q ss_pred HcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCc
Q 001509 418 KAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV 495 (1065)
Q Consensus 418 ~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 495 (1065)
+... ....+.+++...+..++...|+..+.++...-. ....
T Consensus 1008 --g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~-----------------------------------Ls~g 1050 (1236)
T KOG1839|consen 1008 --GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL-----------------------------------LSSG 1050 (1236)
T ss_pred --cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc-----------------------------------cccC
Confidence 1111 124577888888888898999998888876311 0011
Q ss_pred CCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC--------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 496 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD--------YVDAYLRLAAIAKARNNLQLSIELVNEA 562 (1065)
Q Consensus 496 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~a 562 (1065)
...|....+..+++.++...+.++.|+.+.+.++..... +..++..++.+....+++..|....+..
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 146667777788888888889999999999998874322 2345555555555555555555444443
No 372
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.25 E-value=1.5 Score=30.29 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 692 DVWINLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 692 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
+++..||.+-+..++|.+|+.-|++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999999875
No 373
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.93 E-value=1.6 Score=30.63 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHL 756 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 756 (1065)
.++..||.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999999876
No 374
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.28 E-value=31 Score=39.58 Aligned_cols=105 Identities=19% Similarity=0.138 Sum_probs=50.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHh
Q 001509 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1065)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1065)
......|+++.++.... .-.+-|.-+......++..+.+.|.++.|+..-. ++...+.| .+..|+
T Consensus 269 k~av~~~d~~~v~~~i~-~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeL---Al~lg~--- 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIA-ASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFEL---ALQLGN--- 333 (443)
T ss_dssp HHHHHTT-HHH-----H-HHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHH---HHHCT----
T ss_pred HHHHHcCChhhhhhhhh-hhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHH---HHhcCC---
Confidence 34456778888776664 1223344445556777788888888777775432 23333333 344455
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1065)
++.|.+... ..+++..|..||......|+++-|...+.++
T Consensus 334 L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 334 LDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 444444332 2234555555555555555555555555543
No 375
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.00 E-value=6.2 Score=34.11 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=30.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001509 138 LLAKGEVEQASSAFKIVLEADRD---------NVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1065)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1065)
.+..|+|..|++.+.+.+..... ...+++.+|.++...|++++|+..+++++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44566666665555555433211 12445556666666666666666666666554
No 376
>PRK12798 chemotaxis protein; Reviewed
Probab=84.86 E-value=70 Score=35.62 Aligned_cols=151 Identities=17% Similarity=0.048 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1065)
...|+..|..+--..|... .++..-..+....|+.+++..+..+.+....+++...+.+..++..+...++-. -..
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~ 242 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDA 242 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHH
Confidence 5555555555555555432 222233334455566666666655555555555554455544444444443221 112
Q ss_pred HHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD----NCETLKALGHIYVQLGQIEKAQELLRKA 402 (1065)
Q Consensus 327 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 402 (1065)
.+..++..+ ..+.....|+.++..-.-.|+.+-|.-.-.+++.+... ...+.+..+....-..+++.++..+..+
T Consensus 243 ~l~~~ls~~-d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 243 RLVEILSFM-DPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHhc-CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 244444433 33444567888888888888888888888888876422 2334444444444556677776666543
No 377
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.71 E-value=7.3 Score=38.53 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=58.9
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHhhcHH
Q 001509 667 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQWQ 744 (1065)
Q Consensus 667 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~lg~~~~~~g~~~ 744 (1065)
.-..|...|-++-. .+..+++...+.||..|. ..+..+|+..|-+++...... .++.++..|+.++++.|+++
T Consensus 121 ~d~~A~~~fL~~E~----~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 121 GDQEALRRFLQLEG----TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred CcHHHHHHHHHHcC----CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34566665554432 223478899999998887 578999999999999986544 35999999999999999999
Q ss_pred HHHH
Q 001509 745 DCKK 748 (1065)
Q Consensus 745 ~A~~ 748 (1065)
.|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8753
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.67 E-value=43 Score=35.10 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=63.4
Q ss_pred CcHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhh
Q 001509 667 QFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAE 741 (1065)
Q Consensus 667 ~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~lg~~~~~~g 741 (1065)
.....++++.++.......... -...+...+|..|+..|++++|+.+|+.+...|....- ..++..+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3345566666666655422111 23346678999999999999999999999887754432 677888899999999
Q ss_pred cHHHHHHHHHHHH
Q 001509 742 QWQDCKKSLLRAI 754 (1065)
Q Consensus 742 ~~~~A~~~~~kal 754 (1065)
+.+..+.+.-+++
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9998877765543
No 379
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.57 E-value=1e+02 Score=37.29 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=63.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1065)
.+++.+..|.-|+.+.+.--. ........+...|..++..|++++|...|-+.+..+. |..+. .-+...
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi------~kfLda 410 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVI------KKFLDA 410 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHH------HHhcCH
Confidence 445555566666665544211 1122345667778888889999999988888875431 22111 122333
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1065)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1065)
.....-..+++.+.+..-.+..--..|-.+|.++++.++-.++
T Consensus 411 q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHH
Confidence 3444455566666655444455555667777777776554443
No 380
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=84.38 E-value=5.3 Score=41.44 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1065)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1065)
+..|..+..+.+.++|.++.-+.-+|.+|.+.|.+.-|+..+...+...|+.+.+-...+.
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3366666666666777666666666777777777777777776666666666655544433
No 381
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.20 E-value=6.5 Score=38.85 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhC-CcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHH
Q 001509 634 LEKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 712 (1065)
Q Consensus 634 ~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 712 (1065)
-+.|...|-++-... -+++...+.||..|. ..+..+|+.++.++++..+.+.. -+|+++..|+.+|+.+|+++.|--
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-FNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHhcchhhhhh
Confidence 345555555443321 136677777777776 56777888888888887764422 368888888888888888887753
No 382
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=7.4 Score=45.45 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 001509 849 QNRQRQEAARQAA 861 (1065)
Q Consensus 849 ~~~~k~e~~~~~~ 861 (1065)
++|+++|++|+.+
T Consensus 358 kererqEqErk~q 370 (1118)
T KOG1029|consen 358 KERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555444
No 383
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.83 E-value=1.6 Score=27.22 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 001509 693 VWINLAHVYFAQGNFALAMKMY 714 (1065)
Q Consensus 693 ~~~~lg~~~~~~g~~~~A~~~~ 714 (1065)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555555554
No 384
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.72 E-value=21 Score=37.67 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1065)
++..++..+...|+++.+...++..+..+|.+-.+|..+-.+|+..|+...|+..|.++-.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555666666666666667777776666776666666666666777777777666666655
No 385
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.61 E-value=10 Score=31.06 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 257 (1065)
+..|.-++...+..+|+..|.++++..++....+..||.+.....+.+.+.+.+.+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667777777777777777666666655554443333333355555443
No 386
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.15 E-value=21 Score=39.10 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC--------CC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 166 LGQACVEFNRGRYSDSLEFYKRALQVHP--------SC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p--------~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
+.-|..++++++|..|..-|..+|++.. .. ...+--.+..||+.+++.+.|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 3345566777777777777777666531 11 012334578899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccchHhHHHHHHH
Q 001509 229 ENVEALVALAVMDLQANEAAGIRKGMEK 256 (1065)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~A~~~ 256 (1065)
.+...++..+.+.....+ |.+|-..
T Consensus 260 ~~frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred chhhHHHHHHHHHHHHHH---HHHHHHH
Confidence 888888777777776666 6655543
No 387
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.85 E-value=7.4 Score=41.00 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=60.8
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
.+..++..++..+...|+++.++..++..+..+|.+-..|..+...|...|+...|+..|+++-..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999999999999999988764
No 388
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.82 E-value=35 Score=35.39 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 001509 540 LRLAAIAKARNNLQLSIELVNEALKVNG 567 (1065)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~~p 567 (1065)
..++.+....|++++.+.++++++..+|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 4455555566666666666666665544
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.09 E-value=4.5 Score=27.61 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=6.4
Q ss_pred HHHHHHHHcCChHHHHHH
Q 001509 167 GQACVEFNRGRYSDSLEF 184 (1065)
Q Consensus 167 ~la~~~~~~g~~~~Al~~ 184 (1065)
.+|..+...|+|++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333333333333333
No 390
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.77 E-value=1.3e+02 Score=36.46 Aligned_cols=214 Identities=7% Similarity=-0.044 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCC-chhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhh
Q 001509 44 LIIAREYFKQGKVEQFRQILEEGSSP-EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (1065)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~ 122 (1065)
..-|...|++|++++|+..|-+.+.. ++. +. ..-|+... ....-..+++...+
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~V-------------i~kfLdaq-----------~IknLt~YLe~L~~ 425 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGFLEPS--EV-------------IKKFLDAQ-----------RIKNLTSYLEALHK 425 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcccCChH--HH-------------HHHhcCHH-----------HHHHHHHHHHHHHH
Confidence 55666777888888888877766543 111 10 00011000 11123333444443
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHH
Q 001509 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA--LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1065)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1065)
..-.+.+-...+-.+|.+.++.++-.++.+ ..+.-... .-..-.++...+-+++|.-+-.+.- .+ ..
T Consensus 426 ~gla~~dhttlLLncYiKlkd~~kL~efI~----~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~----~h-e~-- 494 (933)
T KOG2114|consen 426 KGLANSDHTTLLLNCYIKLKDVEKLTEFIS----KCDKGEWFFDVETALEILRKSNYLDEAELLATKFK----KH-EW-- 494 (933)
T ss_pred cccccchhHHHHHHHHHHhcchHHHHHHHh----cCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc----cC-HH--
Confidence 333333444455667777777665443333 22211000 0111123444444555544433321 12 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC--CCHHH----HHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMA----LNY 273 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~----~~~ 273 (1065)
.+-.++..+|+|.+|+.++.. +.|... ......|..++... .++-+..+-+.+...- ..... ...
T Consensus 495 -vl~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~h~----P~~t~~ili~~~t~~~~~~~~~~~s~~~~~ 566 (933)
T KOG2114|consen 495 -VLDILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLEHD----PEETMKILIELITELNSQGKGKSLSNIPDS 566 (933)
T ss_pred -HHHHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhhC----hHHHHHHHHHHHhhcCCCCCCchhhcCccc
Confidence 234556778899999988876 344332 33555666666543 4444444444443221 11000 011
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 001509 274 LANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1065)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~ 302 (1065)
+-.+....+++.....+++......+..+
T Consensus 567 ~~~i~if~~~~~~~~~Fl~~~~E~s~~s~ 595 (933)
T KOG2114|consen 567 IEFIGIFSQNYQILLNFLESMSEISPDSE 595 (933)
T ss_pred hhheeeeccCHHHHHHHHHHHHhcCCCch
Confidence 22333445555555555555444444333
No 391
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=81.65 E-value=4.9 Score=27.42 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhcHHHHHHH
Q 001509 730 LLYLARTHYEAEQWQDCKKS 749 (1065)
Q Consensus 730 ~~~lg~~~~~~g~~~~A~~~ 749 (1065)
++.+|-.++.+|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555555555
No 392
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=81.36 E-value=44 Score=38.20 Aligned_cols=173 Identities=16% Similarity=0.078 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhH-HH-HHHHHHHHHHHHHHhchhhh---hhhhhHHHHHHHHHHH
Q 001509 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVR-YE-RIAILNALGVYYTYLGKIET---KQREKEEHFILATQYY 117 (1065)
Q Consensus 43 ~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~-~~~~l~~La~~y~~~g~~~~---~~~~k~~~~~~A~~~~ 117 (1065)
.-.+|..+|-.|+|+-|..+|+.+... |..++ .. -+.++-..|.+.+..+.... .+..-+..++.|...|
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~D-----f~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKD-----FKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHH-----HhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 357999999999999999999987432 32221 11 12334444555555554322 1223346778888888
Q ss_pred HHHh----hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHH--HHcCChHHHHHH
Q 001509 118 NKAS----RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRD-----NVPALLGQACVE--FNRGRYSDSLEF 184 (1065)
Q Consensus 118 ~~a~----~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-----~~~a~~~la~~~--~~~g~~~~Al~~ 184 (1065)
.+.- ...+.-..+.+..+.++...|.+.+|...+-++... ..+ .+..+-..|.++ ........-..-
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r 365 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTR 365 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchh
Confidence 8842 222233456666777888888887777766666544 211 122233333333 111000000000
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
+++ .+...+.-|.-|...|+...|..+|..++....
T Consensus 366 ~RK--------~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 366 FRK--------YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred hHH--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 111 023344567778888999999999998887643
No 393
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.18 E-value=2.7 Score=26.13 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEE 65 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~ 65 (1065)
...+.+|..++.+|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3568899999999999999998863
No 394
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=57 Score=36.06 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=99.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----C
Q 001509 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE--VEQASSAFKIVLEADRDNVPALLGQACVEFNR----G 176 (1065)
Q Consensus 103 ~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g 176 (1065)
...+...++.-+.+...+++.+|++..+|+.+..++.+.+. +..=+.++.++++.+|.|..+|...=.+.-.. .
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 34456677888999999999999999999999999987764 68889999999999999988875544433332 3
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK------LGQ------LGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
...+=+.+..+++..++.+ -.+|.....++-. .|+ ...-+.....++-.+|++..+|+..-
T Consensus 164 ~~~~El~ftt~~I~~nfSN-YsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~r 236 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSN-YSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHR 236 (421)
T ss_pred cchhHHHHHHHHHhccchh-hhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehH
Confidence 3677788999999999988 4555555444431 232 23344566667778999999987733
No 395
>PLN03237 DNA topoisomerase 2; Provisional
Probab=80.25 E-value=5 Score=51.74 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=17.9
Q ss_pred CchhhhhhhhHHHhcCCCCC----CCCCCCCCCch
Q 001509 984 DDDVEENANDRLAAAGLEDS----DVDDEMAPSIT 1014 (1065)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 1014 (1065)
+++.-.+-+++|++-.|.-+ -.-.+..|+++
T Consensus 1259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1293 (1465)
T PLN03237 1259 EEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVP 1293 (1465)
T ss_pred ccccHHHHHHHHHhccccCCCCcccccccccccch
Confidence 33444567888999888432 22233555555
No 396
>PF13041 PPR_2: PPR repeat family
Probab=78.72 E-value=8.6 Score=28.42 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 001509 691 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 734 (1065)
Q Consensus 691 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg 734 (1065)
..+|..+-+.|.+.|++++|.++|++..+. +-.++..++..+-
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li 45 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILI 45 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 345555666666666666666666665543 3344444444433
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.62 E-value=65 Score=33.76 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=41.2
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQIEKAQELLRKA 402 (1065)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 402 (1065)
.....+|..|+..|++++|+.+|+.+...... ...++..+..|+...|+.+..+.+.-++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556788888888888888888888654332 2456667777888888877766655443
No 398
>PF13041 PPR_2: PPR repeat family
Probab=77.70 E-value=5.2 Score=29.61 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=28.8
Q ss_pred hHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHH
Q 001509 570 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 614 (1065)
Q Consensus 570 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~ 614 (1065)
...|..+-..+.+.|++++|.+.|+++.+..-.++..++..+.+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345666666677777777777777777766655666666555443
No 399
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=77.36 E-value=16 Score=38.10 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001509 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1065)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1065)
.++...++++.|+.+.++.+.++|.+ +.-+.-.|.+|.++|.+.-|+..+...++..|+.+.+-.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~d-p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPED-PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCC-hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 34555666777777777777777766 333455667777777777777777776666666665533
No 400
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=77.26 E-value=81 Score=32.75 Aligned_cols=175 Identities=13% Similarity=0.071 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCh-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCC--hHHHHHhhhhh
Q 001509 505 LFNLARLLEQIHDTVAASVLYRLILFKYQDY-VDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKY--PNALSMLGDLE 580 (1065)
Q Consensus 505 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 580 (1065)
+..+|.+....|++++.+.++++++..+|.. .+-...+..+|. ..|....+...+.......... ......+...-
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 5678999999999999999999999988765 333333444432 2344445555555544443322 11111111110
Q ss_pred ccc-----cchHHHHHHHHHhhhcCC-C--CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhh-----
Q 001509 581 LKN-----DDWVKAKETFRAASDATD-G--KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ----- 647 (1065)
Q Consensus 581 ~~~-----g~~~~A~~~~~~al~~~~-~--~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----- 647 (1065)
.+. .--...+......+-... . ...+.+-..|+. |--.+.... ......-.++|...|++++..
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDy-yRYlaE~~~--~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDY-YRYLAEFDS--GDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHH-HHHHHHCTT--HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccc-ccccccccc--chhhHHHHHHHHHhhhhHHHHHhccc
Confidence 000 011233333333222111 1 111222234444 333322111 111123456677777766653
Q ss_pred CCcchH---HHhHHHHHH-HhcCCcHHHHHHHHHHHHHh
Q 001509 648 HTSNLY---AANGAGVVL-AEKGQFDVSKDLFTQVQEAA 682 (1065)
Q Consensus 648 ~p~~~~---a~~~la~~~-~~~g~~~~A~~~~~~~~~~~ 682 (1065)
.|.+|. ...+.+..| ...|+.++|+.+.++++...
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 455543 333344444 45788888888888777644
No 401
>PF12854 PPR_1: PPR repeat
Probab=77.04 E-value=3.8 Score=27.51 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=16.0
Q ss_pred chHHHhHHHHHHHhcCCcHHHHHHHHH
Q 001509 651 NLYAANGAGVVLAEKGQFDVSKDLFTQ 677 (1065)
Q Consensus 651 ~~~a~~~la~~~~~~g~~~~A~~~~~~ 677 (1065)
|...++.+...|++.|++++|..+|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344556666666666666666666554
No 402
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=76.74 E-value=33 Score=43.44 Aligned_cols=6 Identities=17% Similarity=0.340 Sum_probs=2.2
Q ss_pred HHhcCC
Q 001509 995 LAAAGL 1000 (1065)
Q Consensus 995 ~~~~~~ 1000 (1065)
|-..|+
T Consensus 603 ~~r~~~ 608 (1021)
T PTZ00266 603 SMRSGV 608 (1021)
T ss_pred hhhccc
Confidence 333333
No 403
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.58 E-value=1.4e+02 Score=33.93 Aligned_cols=98 Identities=14% Similarity=0.009 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001509 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1065)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1065)
.|-+..++..+-.++-....+.-...++.+++....+- ..++.++.||... ..++-...|++.++.+-+++..-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 34445555555566666666666667777777766554 4577788888777 55666778888888877777777777
Q ss_pred HHHHHHccchHhHHHHHHHHHHHHH
Q 001509 238 AVMDLQANEAAGIRKGMEKMQRAFE 262 (1065)
Q Consensus 238 a~~~~~~~~~~~~~~A~~~~~~al~ 262 (1065)
+..|.. ++ ...+...|.+++.
T Consensus 139 a~~yEk-ik---~sk~a~~f~Ka~y 159 (711)
T COG1747 139 ADKYEK-IK---KSKAAEFFGKALY 159 (711)
T ss_pred HHHHHH-hc---hhhHHHHHHHHHH
Confidence 777666 34 5667777777664
No 404
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=75.91 E-value=1.8e+02 Score=34.66 Aligned_cols=25 Identities=0% Similarity=-0.004 Sum_probs=16.2
Q ss_pred HHHHHHHhhCCcchHHHhHHHHHHH
Q 001509 639 ELYTRVIVQHTSNLYAANGAGVVLA 663 (1065)
Q Consensus 639 ~~~~~~l~~~p~~~~a~~~la~~~~ 663 (1065)
..|.++.+.+|.+...+.....-+.
T Consensus 763 aEFDqiMksDPe~m~~lv~kVn~WL 787 (1259)
T KOG0163|consen 763 AEFDQIMKSDPETMLELVAKVNKWL 787 (1259)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3578888888887765554444333
No 405
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.81 E-value=4.6 Score=44.99 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRA-------LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~a-------l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1065)
.++.++.+++.-.|+|..|++.++.+ ...-|.+...+++.+|.||+.+++|.+|+..|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888889999988887643 2223444456788999999999999999999998764
No 406
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.59 E-value=2e+02 Score=34.96 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=18.3
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCCCcc
Q 001509 734 ARTHYEAEQWQDCKKSLLRAIHLAPSNYT 762 (1065)
Q Consensus 734 g~~~~~~g~~~~A~~~~~kal~~~P~~~~ 762 (1065)
...++..|+++.|+..+.+. .+-|.++.
T Consensus 512 ff~~~~~g~~~~AL~~i~~L-~liP~~~~ 539 (613)
T PF04097_consen 512 FFDLYHAGQYEQALDIIEKL-DLIPLDPS 539 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHHT-T-S-S-HH
T ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCCHH
Confidence 45677899999999998874 58885543
No 407
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.08 E-value=32 Score=34.46 Aligned_cols=18 Identities=17% Similarity=0.315 Sum_probs=9.0
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 001509 877 LLEKRKLEDEQKRLRQQE 894 (1065)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~ 894 (1065)
.+...|++++.|+++...
T Consensus 151 eEae~k~ee~~RkakEE~ 168 (299)
T KOG3054|consen 151 EEAELKEEEKERKAKEEE 168 (299)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 444445555555555533
No 408
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.80 E-value=43 Score=39.58 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 001509 850 NRQRQEAARQAALA 863 (1065)
Q Consensus 850 ~~~k~e~~~~~~~~ 863 (1065)
..+|.|++|+.|+-
T Consensus 349 qkEreE~ekkerer 362 (1118)
T KOG1029|consen 349 QKEREEEEKKERER 362 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445544443
No 409
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.75 E-value=2.8 Score=49.51 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=7.2
Q ss_pred chhccCcchhhccC
Q 001509 1040 DELQDSDGELREND 1053 (1065)
Q Consensus 1040 ~~~~~~~~~~~~~~ 1053 (1065)
++.++.+|++-|.+
T Consensus 1488 D~Dee~~~~~~d~~ 1501 (1516)
T KOG1832|consen 1488 DEDEEDDGEMQDFM 1501 (1516)
T ss_pred ccchhhhhhhhccc
Confidence 44455555555544
No 410
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=74.51 E-value=5.7 Score=27.50 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 537 DAYLRLAAIAKARNNLQLSIELVNEALKV 565 (1065)
Q Consensus 537 ~a~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (1065)
+++..||.+....++|.+|+.-|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777777777665
No 411
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=74.48 E-value=1.7e+02 Score=33.63 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 001509 852 QRQEAARQAAL 862 (1065)
Q Consensus 852 ~k~e~~~~~~~ 862 (1065)
.+.|++|+.+.
T Consensus 222 kr~Eaerk~~~ 232 (591)
T KOG2412|consen 222 KREEAERKRRA 232 (591)
T ss_pred hhhhhHHHHHH
Confidence 33334443333
No 412
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=73.85 E-value=76 Score=29.62 Aligned_cols=36 Identities=8% Similarity=-0.113 Sum_probs=18.6
Q ss_pred HHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001509 513 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 548 (1065)
Q Consensus 513 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 548 (1065)
...+.+.....+++.++..++.++..+..+..+|..
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 344555555555555555544444455555555443
No 413
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=72.24 E-value=40 Score=37.50 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=3.8
Q ss_pred hhhhHHHhcC
Q 001509 990 NANDRLAAAG 999 (1065)
Q Consensus 990 ~~~~~~~~~~ 999 (1065)
..-.+|-+-|
T Consensus 513 v~~~~lcaid 522 (708)
T KOG3654|consen 513 VHSGLLCAID 522 (708)
T ss_pred hhhhhhcccc
Confidence 3333443333
No 414
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=72.17 E-value=1e+02 Score=30.04 Aligned_cols=100 Identities=13% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHH-----HcCCHHHHHHHHHHHHHhCCCc
Q 001509 302 PTKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL-----KLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 302 ~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
...+++.+.||..+.. +.+|+.|..+|..-.. ...++...+.+|..++ ..+++..|+..|..+-.. +.
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCd----en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~ 104 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCD----ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NI 104 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CC
Confidence 4567788888876654 5678888888876653 2344455555555443 235788899998887763 56
Q ss_pred HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCC
Q 001509 376 CETLKALGHIYVQLG-------QIEKAQELLRKAAKIDP 407 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p 407 (1065)
+.+...+|.++..-. +..+|..++.++-.+..
T Consensus 105 ~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~ 143 (248)
T KOG4014|consen 105 PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED 143 (248)
T ss_pred HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC
Confidence 788888888776432 36678888887776653
No 415
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.77 E-value=92 Score=34.57 Aligned_cols=27 Identities=19% Similarity=0.104 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 001509 730 LLYLARTHYEAEQWQDCKKSLLRAIHL 756 (1065)
Q Consensus 730 ~~~lg~~~~~~g~~~~A~~~~~kal~~ 756 (1065)
...-|.+.|++|+.++|.++|+.+...
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 334588899999999999988877543
No 416
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=70.45 E-value=1.5e+02 Score=33.83 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001509 166 LGQACVEFNRGRYSDSLEFYKRALQVH 192 (1065)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1065)
..+|..++..|+|+-|...|+.+.+-.
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 445555566666666666665555433
No 417
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.28 E-value=11 Score=24.39 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 212 QLGKARQAFQRALQLDPENVEALVALAV 239 (1065)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1065)
+++.|...|++++...|.++..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555566666666666655555555443
No 418
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.10 E-value=1.8e+02 Score=36.72 Aligned_cols=192 Identities=17% Similarity=0.073 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------Hccch-HhHHHHHHHHHHHHHhCCCCHH
Q 001509 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL------QANEA-AGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~------~~~~~-~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
+..++.+|.||...|...+|+.+|.++..-... ..++..+..... ..|+. .....++.+|.+++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge-~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~-------- 990 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE-GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVV-------- 990 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhcccc-HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHH--------
Confidence 556888999999999999999999999875433 224444333321 12220 00122344444433
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhH
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVT-NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1065)
+++-..+-.+.+.++...++... +..|..+..+..+-.-+..+|.+.+|...+-+.. .......++..+
T Consensus 991 ------rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np----dserrrdcLRql 1060 (1480)
T KOG4521|consen 991 ------RLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP----DSERRRDCLRQL 1060 (1480)
T ss_pred ------HHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC----cHHHHHHHHHHH
Confidence 34445566677888888888654 3446666667777777788888888865543221 122223455666
Q ss_pred HHHHHHcCCHHHH------------HH-HHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCC
Q 001509 349 GQVQLKLGDFRSA------------LT-NFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQE-LLRKAAKIDP 407 (1065)
Q Consensus 349 a~~~~~~g~~~~A------------~~-~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p 407 (1065)
..+++..|.++.- .. +++.+-...|-. ...|..|--.+...+++.+|-. +|+.+..+..
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 7777777765432 22 333333333332 3445555556667788887755 4666666543
No 419
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.50 E-value=99 Score=33.04 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADR------DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAI 199 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~ 199 (1065)
..++..+|..|.+.|+-+.|.+.|.+.....- +-..+...+|.+|....-..+.+...+.+++...+.. ...
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 47888999999999999999998888765431 1234456666666666555555555555555554431 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 200 RLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1065)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1065)
....|.......+|.+|...|-.++...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 3445666667777888887777766543
No 420
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.72 E-value=10 Score=27.27 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001509 44 LIIAREYFKQGKVEQFRQILEEGSSP 69 (1065)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~l~~~~~~ 69 (1065)
+.+|.+|+..|+.+.|+.+|+.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999998754
No 421
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.62 E-value=6.6 Score=28.22 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 695 INLAHVYFAQGNFALAMKMYQNCLR 719 (1065)
Q Consensus 695 ~~lg~~~~~~g~~~~A~~~~~~al~ 719 (1065)
++||..|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4555566666666666666665553
No 422
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=68.02 E-value=7.2 Score=43.88 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=8.3
Q ss_pred CCcccccccCcCcccc
Q 001509 934 GGKRRKKDKSSRSHYE 949 (1065)
Q Consensus 934 ~~~~~~~~~~~~~~~~ 949 (1065)
++||+|++..+..++.
T Consensus 270 ~~krkkk~d~Dd~a~e 285 (555)
T KOG2393|consen 270 ATKRKKKKDVDDEAFE 285 (555)
T ss_pred ccccccccCCcccccc
Confidence 3445555555555553
No 423
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=67.20 E-value=3.6 Score=45.10 Aligned_cols=12 Identities=50% Similarity=0.828 Sum_probs=9.7
Q ss_pred hcCCCCCCCCCC
Q 001509 997 AAGLEDSDVDDE 1008 (1065)
Q Consensus 997 ~~~~~~~~~~~~ 1008 (1065)
-+|++|||+++|
T Consensus 106 E~GFAdSDDEdD 117 (458)
T PF10446_consen 106 EAGFADSDDEDD 117 (458)
T ss_pred cccccccccccc
Confidence 379999988865
No 424
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.44 E-value=2.2e+02 Score=34.46 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=61.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHc
Q 001509 168 QACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA--LVALAVMDLQA 244 (1065)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~la~~~~~~ 244 (1065)
...+++..|.|+.|+.++-+ .+.+ ...+++.++..++.+ +.-....-...+..++.++.. +..|...|...
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gL--L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGL--LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCC--CCCCCccccceeeecCCCCCCcCHHHHHHHHHHH
Confidence 34567889999999998877 2222 235566555555433 322222225555555554332 22222333332
Q ss_pred cchHhHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHcCCHHHHHH-----------HHHH---HHhccCCCCCchHHH
Q 001509 245 NEAAGIRKGMEKMQRAFEIY-PYC-AMALNYLANHFFFTGQHFLVEQ-----------LTET---ALAVTNHGPTKSHSY 308 (1065)
Q Consensus 245 ~~~~~~~~A~~~~~~al~~~-p~~-~~~~~~la~~~~~~g~~~~A~~-----------~~~~---al~~~~~~~~~~~~~ 308 (1065)
=...+...|+.+|--+-... |.. ...+..+..+....+++..-+- ++++ .+...........+.
T Consensus 338 F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREII 417 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHH
Confidence 22233777777765433221 221 2233334444444443332211 1111 111111111223344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 309 YNLARSYHSKGDYEKAGLYYMASV 332 (1065)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al 332 (1065)
...|.-....|++.+|+.+|.-+.
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh
Confidence 455666666777777777665543
No 425
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.27 E-value=31 Score=38.58 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHh
Q 001509 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1065)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~ 121 (1065)
+.+...++-.|+|..|+++++.+-- .....|....+..+.+++.+|-+|+.+++.. +|+..|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl-~~~~l~~~V~~~~is~~YyvGFaylMlrRY~-----------DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDL-NKKGLYTKVPACHISTYYYVGFAYLMLRRYA-----------DAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCc-ccchhhccCcchheehHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 6677888888888888888887522 1112355556667777777888887777655 7777777765
No 426
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.27 E-value=3.2e+02 Score=34.24 Aligned_cols=117 Identities=13% Similarity=-0.048 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----HCCChHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCCChHHHH--
Q 001509 503 TVLFNLARLLEQIHDTVAASVLYRLILF----KYQDYVDAYLRLAAIAKARNNL--QLSIELVNEALKVNGKYPNALS-- 574 (1065)
Q Consensus 503 ~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~-- 574 (1065)
.-+..|+.+|...|++++|++++..... .++...+.+-.+...+...+.. +-..++-.-.+..+|....-.+
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 4567889999999999999999999887 3333455555666666666665 7777777777777765331000
Q ss_pred -----------HhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHH
Q 001509 575 -----------MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 620 (1065)
Q Consensus 575 -----------~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~ 620 (1065)
....-|+......-++.+++.++......+......+... |....
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~l-y~e~v 640 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKL-YLEKV 640 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHH-HHHHH
Confidence 1111245566778889999999887766666666667666 66653
No 427
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=65.79 E-value=1.4e+02 Score=29.26 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=19.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 001509 877 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 906 (1065)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 906 (1065)
.++++|++++ ..+.++++-....-.|+.
T Consensus 195 aeek~Kr~~E--~qKnfEEsRd~Rv~sWrn 222 (250)
T KOG1150|consen 195 AEEKRKRERE--WQKNFEESRDGRVGSWRN 222 (250)
T ss_pred HHHHHHHHHH--HHHHHHHhcccccchHHH
Confidence 3445555554 678888888888888874
No 428
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=65.77 E-value=2e+02 Score=31.04 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHH--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHh
Q 001509 502 VTVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576 (1065)
Q Consensus 502 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 576 (1065)
+.+-.|.+.......-...++...+-+... -..+.-.+...+.++.+.|...+|...|++++.+.++..+..+..
T Consensus 329 PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 329 PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 334445555554444455555555544432 223344555566677777777777777777777766666554443
No 429
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.24 E-value=45 Score=33.38 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=33.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
.++..+...+|+.....-++..|.+......+-..++-.|+|.+|+..++-+-.+.|+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34455555555555555555555555555555555555555555555555555555554
No 430
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=65.17 E-value=4.9 Score=43.87 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=13.4
Q ss_pred hhhhhhHHHhcCCCCCCCCCC
Q 001509 988 EENANDRLAAAGLEDSDVDDE 1008 (1065)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~ 1008 (1065)
++.++-.|-+--|.|+|+|+.
T Consensus 90 ~e~~e~~~~~~~l~~~~~de~ 110 (807)
T KOG0066|consen 90 DEKPEKSLPANDLDDEDDDEA 110 (807)
T ss_pred ccchhhcCcccccCCCCchhh
Confidence 345556666777887776644
No 431
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=65.06 E-value=60 Score=35.57 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHh
Q 001509 794 AELENAVRVFSHLS 807 (1065)
Q Consensus 794 ~~l~~a~~~~~~l~ 807 (1065)
.-+..++.+.+.+.
T Consensus 235 ~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 235 PLLKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHHHhh
Confidence 34555666666665
No 432
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.48 E-value=22 Score=37.11 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=52.8
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
+...+..|...|.+.+|+++.++++..+|-+...+..+..++...|+--.+...|++.-+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344677889999999999999999999999999999999999999998888888877543
No 433
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=64.28 E-value=4e+02 Score=34.05 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 001509 506 FNLARLLEQIHDTVAASVLYRLI 528 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~a 528 (1065)
..++..+..++++-+|..+....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHH
Confidence 34444555555555555554443
No 434
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.19 E-value=92 Score=36.99 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------hHHHHHhhhhhc---cccchHHHHHHHHHhhhcCCCCChH
Q 001509 536 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLEL---KNDDWVKAKETFRAASDATDGKDSY 606 (1065)
Q Consensus 536 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~d~~ 606 (1065)
++...++...|....+|+.-+++.+.+-.+ |+. ..+.+.++.++- +-|+-.+|+...-.+++...+..+.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 556666677777777777777776665443 321 122222232222 3477888888888888765554445
Q ss_pred HHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcC
Q 001509 607 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 666 (1065)
Q Consensus 607 ~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g 666 (1065)
.++..|.+ |-..--.. +.. ..+..+.|+..|+++++..|.-. +-.+++.++...|
T Consensus 280 m~Cl~GRI-YKDmF~~S--~yt-Da~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 280 MYCLCGRI-YKDMFIAS--NYT-DAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAG 334 (1226)
T ss_pred eeeeechh-hhhhhhcc--CCc-chhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhh
Confidence 55556766 65441110 000 12788999999999999999732 3345566665555
No 435
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.80 E-value=17 Score=23.39 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 143 EVEQASSAFKIVLEADRDNVPALLGQA 169 (1065)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1065)
+++.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344445555555555554444444433
No 436
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.74 E-value=19 Score=37.51 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHh
Q 001509 539 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 596 (1065)
Q Consensus 539 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 596 (1065)
+...+..|...|.+.+|+.+.++++.++|-+...+..+..++..+|+--.|...|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445566778888888888888888888888888888888888888877777777654
No 437
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.59 E-value=3.8e+02 Score=33.55 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.7
Q ss_pred HHHHHHcCCHHHHHHHHHhcC
Q 001509 47 AREYFKQGKVEQFRQILEEGS 67 (1065)
Q Consensus 47 a~~y~~~g~~~~A~~~l~~~~ 67 (1065)
|..+|.+|++++|+..|+++.
T Consensus 353 a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 353 AFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHhhhHHHHHHHHHhhc
Confidence 778999999999999998864
No 438
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.56 E-value=35 Score=37.39 Aligned_cols=100 Identities=17% Similarity=0.070 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCCchhh
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFP 344 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~ 344 (1065)
++..++.+|...|+.+.|++.|-++.............+.++..+-...|+|..-..+..++..... ...-...+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4556677777777777777777776555444445556677777777777777777777666654210 00011122
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHH
Q 001509 345 YYGLGQVQLKLGDFRSALTNFEKVL 369 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l 369 (1065)
...-|.+.+..++|..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334555566668888888876554
No 439
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=63.02 E-value=1.7e+02 Score=30.75 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 001509 848 QQNRQRQEAARQAA 861 (1065)
Q Consensus 848 ~~~~~k~e~~~~~~ 861 (1065)
+...++.|++|++|
T Consensus 193 q~~ke~sE~ark~R 206 (328)
T KOG3080|consen 193 QTAKERSEEARKQR 206 (328)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444555444
No 440
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.29 E-value=2.1e+02 Score=30.10 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh---H
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP---N 571 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 571 (1065)
...++.++|..|.+.++.+.+.+++.+.+.... +-.-+..++|.+|..+.-..+.++.....++...+.. .
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 568899999999999999999999988876432 2234667788888777777777777777777665322 1
Q ss_pred HHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHH
Q 001509 572 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 608 (1065)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~ 608 (1065)
.-...|...+...++.+|-..+..++....+....++
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY 230 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISY 230 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccH
Confidence 2334566667778899999999888876655444443
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.14 E-value=28 Score=38.08 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cH
Q 001509 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------NC 376 (1065)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~ 376 (1065)
.++..+|..|...|+++.|++.|.++..-.......+..+.++..+-+..|+|..-..+..++... |. .+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chhhhhHHHhcCc
Confidence 567889999999999999999999977655455556677888888899999998888777777653 10 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 377 ETLKALGHIYVQLGQIEKAQELLRKAA 403 (1065)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~al 403 (1065)
.+...-|.+.+..++|..|..+|-.+.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555666667778988888876543
No 442
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=61.36 E-value=9.1 Score=24.48 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001509 42 LWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1065)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~l~~~~~~ 69 (1065)
.|..+-..|.+.|++++|..+++++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4788899999999999999999998543
No 443
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=60.99 E-value=65 Score=31.90 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=4.9
Q ss_pred HHHHhhhhcCCchh
Q 001509 898 QRVKEQWRSSTPAS 911 (1065)
Q Consensus 898 ~~~~~~w~~~~~~~ 911 (1065)
+...+.|.+.-..+
T Consensus 116 rqkie~we~~q~Gk 129 (190)
T PF06936_consen 116 RQKIEMWESMQEGK 129 (190)
T ss_dssp HHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHH
Confidence 34456674443333
No 444
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.10 E-value=1.2e+02 Score=29.65 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhc---CCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh---hhhhhhHHHHHHH
Q 001509 40 LDLWLIIAREYFKQGKVEQFRQILEEG---SSPEIDEYYADVRYERIAILNALGVYYTYLGKIE---TKQREKEEHFILA 113 (1065)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~l~~~---~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~---~~~~~k~~~~~~A 113 (1065)
+++++.-+..+|+.|++.++.++.+-+ +.. +.. ........+.+...|..+ ..|+.- .+..+..-=++.|
T Consensus 13 ~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~-~~~-~~a~~~k~l~i~QfLsRI--~eG~~LD~~Fd~~~~~TPLESA 88 (200)
T cd00280 13 LDFYFHSACRAFREGRYEDFRRTRDIAEALLVG-PLK-LTATQLKTLRIMQFLSRI--AEGKNLDCQFENDEELTPLESA 88 (200)
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhc-ccc-ccccchhHhHHHHHHHHH--HcCCCCCCccCCCCCcChHHHH
Confidence 457788999999999999987766543 211 100 000111122222222221 223211 0011111224467
Q ss_pred HHHHHHHhhcCCCCh--------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 114 TQYYNKASRIDMHEP--------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1065)
Q Consensus 114 ~~~~~~a~~~~p~~~--------~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1065)
+..++..-+-.|... ..-.....+++..|.+++|.+.+++... +|++......++.+
T Consensus 89 l~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 89 LMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 777766554433210 0112234556666777777777777666 55554444444433
No 445
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=58.88 E-value=1.2e+02 Score=26.37 Aligned_cols=14 Identities=14% Similarity=0.295 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 001509 831 HLLDAAKIHREAAE 844 (1065)
Q Consensus 831 ~~l~~~~~~~~~~~ 844 (1065)
.+|......+..++
T Consensus 59 ~ILDd~~~~l~~sk 72 (105)
T PF11214_consen 59 SILDDTESKLNDSK 72 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 446
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=58.77 E-value=26 Score=37.50 Aligned_cols=62 Identities=18% Similarity=0.046 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 174 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 174 (1065)
|..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888887777775543446666666665555
No 447
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.68 E-value=2.4e+02 Score=29.66 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=36.1
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEI-YPD-----NCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~-~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
+..+.+-.....-++-++-+.+.++. ..+ ..+++.++|..|.+.++.+.+.+++.+.+..
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33333333334444555555444332 222 2578888888888888888888888777654
No 448
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=58.46 E-value=1.6e+02 Score=27.44 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=28.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1065)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1065)
+...+.+...+.+++.++..++.++..+..+..+|... +..+.+.++.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34456677777777777776666666666677776654 2333444443
No 449
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=58.44 E-value=1.7e+02 Score=34.34 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=7.4
Q ss_pred chHHHHhhhcCC
Q 001509 1013 ITAARRRRALSE 1024 (1065)
Q Consensus 1013 ~~~~~~~~~~~~ 1024 (1065)
|.+.+.||-|-.
T Consensus 502 S~~VsarrPlAq 513 (811)
T KOG4364|consen 502 SQVVSARRPLAQ 513 (811)
T ss_pred ccccccCCcccc
Confidence 555666776653
No 450
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=58.11 E-value=2.4e+02 Score=29.41 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-CC--CChHHHHHhhhhhccc-cchHHHHHHHHH
Q 001509 540 LRLAAIAKARNNLQLSIELVNEALKV-NG--KYPNALSMLGDLELKN-DDWVKAKETFRA 595 (1065)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~-~p--~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 595 (1065)
..++.+..+.++|++.+.++.+++.. +| -+.+-+..++.+|-.. |....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 34555666666677766666666665 32 3344555555554432 444444444443
No 451
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=58.00 E-value=32 Score=32.26 Aligned_cols=52 Identities=23% Similarity=0.132 Sum_probs=38.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001509 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 177 (1065)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 177 (1065)
...+..+..+...+..|++.-|..+++.++..+|+|..+...++.++...|.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4556777788888888888888888888888888888888888877766543
No 452
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=57.82 E-value=1.3e+02 Score=33.20 Aligned_cols=104 Identities=19% Similarity=0.160 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001509 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1065)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1065)
++.-|.+.+.-+|++..-.+.++..-+..-.......+-+..|.+|+.+++|.+|+..|-.++-.-...-......+.+|
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~ 316 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQY 316 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhH
Confidence 34445566667777544333332222211111112223377888888999999999888877643111111222233333
Q ss_pred HHcC-CHHHHHHHHHHHHHhCCCcH
Q 001509 387 VQLG-QIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 387 ~~~g-~~~~A~~~~~~al~~~p~~~ 410 (1065)
-..+ ..+.-..++.-++...|...
T Consensus 317 d~inKq~eqm~~llai~l~~yPq~i 341 (525)
T KOG3677|consen 317 DMINKQNEQMHHLLAICLSMYPQMI 341 (525)
T ss_pred hhhhhhHHHHHHHHHHHHHhCchhh
Confidence 3333 34555555666667777433
No 453
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=57.70 E-value=34 Score=36.62 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1065)
Q Consensus 181 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1065)
|..+|.+|+.+.|.. ...+..+|.++...|+.-.|+-+|-+++-.....+.+..+|..+..
T Consensus 1 A~~~Y~~A~~l~P~~-G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTB-SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 456666666666666 5666666666666666666666666666443333444444444433
No 454
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.25 E-value=1.9e+02 Score=32.57 Aligned_cols=62 Identities=21% Similarity=0.112 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCChH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHH
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYV--DAYLRL--AAIAKARNNLQLSIELVNEALKV 565 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~l--a~~~~~~g~~~~A~~~~~~al~~ 565 (1065)
.....+..++..++|..|..++..+...-|... ..+..+ |..+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445667778899999999999999988634333 233333 44556788999999999998775
No 455
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.97 E-value=1.4e+02 Score=31.15 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHH
Q 001509 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA--------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR--GRYSD 180 (1065)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--g~~~~ 180 (1065)
..|++.=...+..+|..-..|..+-.+... ..-++.-+..+..+++.+|.+...|...-.++-.. .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 456777677777777666666665444433 12246667788888888999888887776666554 66777
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHccchHh--
Q 001509 181 SLEFYKRALQVHPSCPGAIRLGIGLCR------YKLGQLGKARQAFQRALQLDPENVEALVAL---AVMDLQANEAAG-- 249 (1065)
Q Consensus 181 Al~~~~~al~~~p~~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~a~~~l---a~~~~~~~~~~~-- 249 (1065)
-+.+.++++..+|.+ -.+|...-.|+ ..-..+..-.++-..++..++.|..+|... .....+.|+..+
T Consensus 129 El~itkklld~DsrN-yH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk 207 (328)
T COG5536 129 ELFITKKLLDSDSRN-YHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQK 207 (328)
T ss_pred hHHHHHHHhcccccc-cceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHH
Confidence 788888888888887 33333222222 222333344555566777788888887766 333344444211
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 250 -IRKGMEKMQRAFEIYPYCAMALNYLA 275 (1065)
Q Consensus 250 -~~~A~~~~~~al~~~p~~~~~~~~la 275 (1065)
+.+-+.+.-..+-.+|.+..+|..+-
T Consensus 208 ~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 208 YLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred HHHHHHHHHHhhhhcCccccchhhHHH
Confidence 44555555566666777776665543
No 456
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.56 E-value=3.3e+02 Score=30.51 Aligned_cols=71 Identities=27% Similarity=0.144 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHC---CCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLILFKY---QDY--VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 571 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 571 (1065)
.+..+..++.++.+.|.+++|-+++...+..+ |.+ ..+...+.......+.+..|+.+++-++..+-...+
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 45667778888999999999999999887643 322 335566667777888999999999988766543333
No 457
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=56.49 E-value=11 Score=24.87 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~~~~~ 69 (1065)
..|..+...+.+.|+++.|..+|+.+...
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 46888999999999999999999987543
No 458
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.46 E-value=1.4e+02 Score=30.04 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=27.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1065)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 409 (1065)
++.+...+|+...+.-++..|.+......+-.+|+-.|+|++|...++-+-.+.|++
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344444444444444444444444444444444444444444444444444444443
No 459
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.72 E-value=23 Score=28.90 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=16.0
Q ss_pred HcCCHHHHHHHHHHHHHHhc
Q 001509 703 AQGNFALAMKMYQNCLRKFY 722 (1065)
Q Consensus 703 ~~g~~~~A~~~~~~al~~~~ 722 (1065)
..|+|++|+.+|..+++.|-
T Consensus 18 ~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 45888899999988888764
No 460
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=55.61 E-value=20 Score=38.54 Aligned_cols=71 Identities=23% Similarity=0.168 Sum_probs=62.3
Q ss_pred hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001509 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1065)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 412 (1065)
...+.+++.+-++.+.+..|+.....++..++....+++..+..+....++++|++.+..+....|++...
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 34556688888999999999988888888888889999999999999999999999999999999998753
No 461
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.49 E-value=15 Score=23.45 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=17.6
Q ss_pred HhHHHHHHHhcCCcHHHHHHHHHHHH
Q 001509 655 ANGAGVVLAEKGQFDVSKDLFTQVQE 680 (1065)
Q Consensus 655 ~~~la~~~~~~g~~~~A~~~~~~~~~ 680 (1065)
++.+...|.+.|++++|..+|.++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55666667777777777777776654
No 462
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.81 E-value=1.5e+02 Score=33.43 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1065)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1065)
...+..+++.++|..|..+|..+...-|.... ...+..|.-+|...++.+|...++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45566777888888888888887775333212 12334566678888888998888887764
No 463
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=54.63 E-value=14 Score=39.67 Aligned_cols=129 Identities=16% Similarity=0.079 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHH
Q 001509 427 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 506 (1065)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 506 (1065)
..-+.+...+..+++..|..-|.+++..... .... ... + ..............+..
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~---~s~~-~~~-----------------e---~~~~~~~~~~~r~~~~~ 279 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSE---QSRD-REK-----------------E---QENRIPPLRELRFSIRR 279 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcc---cccc-ccc-----------------c---ccccccccccccccccc
Confidence 3445677889999999999999998763210 0000 000 0 00001113334455666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhh
Q 001509 507 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579 (1065)
Q Consensus 507 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 579 (1065)
+++.+-...+.+..|+..-..++..++....++++.+..+....++++|++.+..+....|++..+...+...
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 7888888889999888887777777888888999999999999999999999999999999988766655544
No 464
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=54.41 E-value=13 Score=24.47 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001509 42 LWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1065)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~l~~~~~~ 69 (1065)
.|..+-..|.+.|++++|..+|..+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4778889999999999999999998554
No 465
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.02 E-value=1.7e+02 Score=34.08 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=14.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIV 154 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a 154 (1065)
+..-|-.+|.+.+..|++..|.++|.++
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3444555555555555555555555544
No 466
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.98 E-value=1.2e+02 Score=36.12 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCC
Q 001509 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK---------LGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p 228 (1065)
|+-..|+...-.+++......++.+...|.+|-. .+..+.|+.+|+++++..|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP 318 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc
Confidence 4555555555555554433334444444444432 1233445555555555544
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.94 E-value=5.3e+02 Score=31.85 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=51.1
Q ss_pred HHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCH
Q 001509 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1065)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1065)
+..|+ ++.|++...+ -+++..|..||.....+|++.-|+..|++.. .+..+..+|.-.|+.
T Consensus 654 Le~gn---le~ale~akk-----ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~k-----------nfekLsfLYliTgn~ 714 (1202)
T KOG0292|consen 654 LECGN---LEVALEAAKK-----LDDKDVWERLGEEALRQGNHQIAEMCYQRTK-----------NFEKLSFLYLITGNL 714 (1202)
T ss_pred hhcCC---HHHHHHHHHh-----cCcHHHHHHHHHHHHHhcchHHHHHHHHHhh-----------hhhheeEEEEEeCCH
Confidence 44555 7777766543 3688899999999999999988888887763 334455667778888
Q ss_pred HHHHHHHHHHH
Q 001509 322 EKAGLYYMASV 332 (1065)
Q Consensus 322 ~~A~~~~~~al 332 (1065)
++-.+....+.
T Consensus 715 eKL~Km~~iae 725 (1202)
T KOG0292|consen 715 EKLSKMMKIAE 725 (1202)
T ss_pred HHHHHHHHHHH
Confidence 87766655553
No 468
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=52.32 E-value=2e+02 Score=28.77 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 001509 668 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 703 (1065)
Q Consensus 668 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~ 703 (1065)
.+.+.++.+++-+.....++.+++.+|+..|.|++-
T Consensus 155 ~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~ 190 (199)
T PF04090_consen 155 LDSYQQLIERIDELVLSPPYMDDGELWFIRGMCHLW 190 (199)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH
Confidence 344666666666666667788899999999988765
No 469
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=51.39 E-value=9.4 Score=44.58 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=5.4
Q ss_pred chhccCcchhhc
Q 001509 1040 DELQDSDGELRE 1051 (1065)
Q Consensus 1040 ~~~~~~~~~~~~ 1051 (1065)
+..+.++++||+
T Consensus 266 ~i~E~~~~~i~~ 277 (822)
T KOG2141|consen 266 GISEISNSEIRD 277 (822)
T ss_pred cccccccccccC
Confidence 334444444444
No 470
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=50.53 E-value=3.5e+02 Score=29.03 Aligned_cols=78 Identities=10% Similarity=0.035 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1065)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1065)
+..+.+-....|+...+++..|...+..|+|..|-.++-......++. ...+..+.-..-.-+.+++.|.+.+.+.-
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444567777888888888888888888877654444333222 12223333333445567788877776654
Q ss_pred H
Q 001509 225 Q 225 (1065)
Q Consensus 225 ~ 225 (1065)
+
T Consensus 195 e 195 (432)
T KOG2758|consen 195 E 195 (432)
T ss_pred H
Confidence 4
No 471
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=49.60 E-value=2.6e+02 Score=27.33 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=105.7
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HccchHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001509 198 AIRLGIGLCRY-KLGQLGKARQAFQRALQLDPENVEALVALAVMDL--QANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1065)
Q Consensus 198 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 274 (1065)
.....+|..+. -..+|+.|..+|..--.-+ ..+...+.+|..++ .-|...++..|++.+..+-. .+.+.+...+
T Consensus 35 e~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~ 111 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYL 111 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhh
Confidence 34555555543 4457777777777644332 24555566665443 23455568888888887765 4567777777
Q ss_pred HHHHHHcC-----C--HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhh
Q 001509 275 ANHFFFTG-----Q--HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1065)
Q Consensus 275 a~~~~~~g-----~--~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1065)
+.++.... + ..+|+.++.++-.. .+..+.+.|...|..-.. + +.. ..|.... -..
T Consensus 112 gLl~~~g~~~r~~dpd~~Ka~~y~traCdl-----~~~~aCf~LS~m~~~g~~--k-------~~t---~ap~~g~-p~~ 173 (248)
T KOG4014|consen 112 GLLHWNGEKDRKADPDSEKAERYMTRACDL-----EDGEACFLLSTMYMGGKE--K-------FKT---NAPGEGK-PLD 173 (248)
T ss_pred hhhhccCcCCccCCCCcHHHHHHHHHhccC-----CCchHHHHHHHHHhccch--h-------hcc---cCCCCCC-Ccc
Confidence 76665432 2 45566666666533 456666666655543221 1 111 1111111 112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 001509 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKI 405 (1065)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 405 (1065)
.+..+.-..+.+.|.++--++-++ .++.+.-++...|..- .+.++|..+-.++.++
T Consensus 174 ~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 174 RAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 344455567788888888877776 3567777777776543 3566777766666554
No 472
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=48.54 E-value=1.2e+02 Score=34.68 Aligned_cols=10 Identities=40% Similarity=0.418 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 001509 852 QRQEAARQAA 861 (1065)
Q Consensus 852 ~k~e~~~~~~ 861 (1065)
+.+|+.|+.+
T Consensus 232 ~~qEe~Rqk~ 241 (591)
T KOG2412|consen 232 AHQEELRQKE 241 (591)
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 473
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=48.05 E-value=28 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=16.6
Q ss_pred HhHHHHHHHhcCCcHHHHHHHHHHHH
Q 001509 655 ANGAGVVLAEKGQFDVSKDLFTQVQE 680 (1065)
Q Consensus 655 ~~~la~~~~~~g~~~~A~~~~~~~~~ 680 (1065)
++.+...|.+.|++++|..+|..+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556666666666666666666654
No 474
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.56 E-value=2.8e+02 Score=32.45 Aligned_cols=101 Identities=15% Similarity=0.064 Sum_probs=56.0
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCC
Q 001509 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (1065)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 357 (1065)
....|+++.|..+...+ ....-|..||.+....|++..|.++|.++.. +-.|-.++...|+
T Consensus 647 al~lgrl~iA~~la~e~--------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~ 707 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--------NSEVKWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGN 707 (794)
T ss_pred hhhcCcHHHHHHHHHhh--------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCC
Confidence 34567777776665554 3346677888888888888888888877764 2222233334444
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1065)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 402 (1065)
-+.-...-..+-+.... +..-.+|...|+++++++++...
T Consensus 708 ~~~l~~la~~~~~~g~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 708 AEGLAVLASLAKKQGKN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhHHHHHHHHHHhhccc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 33222222222211111 12234566778888777776543
No 475
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.32 E-value=5.2e+02 Score=30.10 Aligned_cols=194 Identities=12% Similarity=0.099 Sum_probs=105.9
Q ss_pred CCCCCHHHHHHHHHhcCCChH--HHHHHHHHHHHcCCHHHHHHHHHhcCCC----chhhhhhhhHHHHHHHHHHHHHHHH
Q 001509 21 QLPRDASDILDILKAEQAPLD--LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYT 94 (1065)
Q Consensus 21 ~l~~d~~~~~~~L~~e~~~~~--~~~~~a~~y~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~~l~~La~~y~ 94 (1065)
++.+|...+..+-..+..+.. +-+.+..+||..|.|++|+..--++-.. +...|+..--+..+.++..++....
T Consensus 38 eIsddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y 117 (926)
T COG5116 38 EISDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAY 117 (926)
T ss_pred hhhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhh
Confidence 345566566655566666666 5578889999999999999987665432 1122222233445555555544433
Q ss_pred HhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 001509 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVE 172 (1065)
Q Consensus 95 ~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~ 172 (1065)
..|+...-.. .-..+++.+....-.....-+.+|..... - -+.....+++...+. ...++.++...
T Consensus 118 ~~~~~d~iD~-------~l~~v~e~i~~kc~~~se~~~~lgIa~eg--~---rldiie~~l~~~~d~di~~ylL~Lait~ 185 (926)
T COG5116 118 IGGDKDIIDR-------ILDFVLEVIGAKCVDDSEIGYLLGIAAEG--L---RLDIIEKYLSDGNDCDIINYLLDLAITL 185 (926)
T ss_pred hCCCcccchH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHH--H---HHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 3343211000 11122233333322233333444433221 1 123344444433222 33555555554
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
.....+.. .+++..+...|..+..-++.++.|+..+++-+.|...+.+..+.+-
T Consensus 186 v~~~~fr~--~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 186 VEEEGFRK--EILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred hhhHHHHH--HHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 44433332 4566667777766444578889999999999999999999877643
No 476
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.43 E-value=59 Score=30.49 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1065)
-....+..|...+..|+|.-|..+...++..+|++ ..++...+.++.++|.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-EEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHH
Confidence 45666777788888999999999999999999988 6677777777766653
No 477
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=46.35 E-value=2.1e+02 Score=26.30 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=52.9
Q ss_pred HHhHHHHHHHhcCCcHHHHHHHHHHHHHhcC-----------CCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 001509 654 AANGAGVVLAEKGQFDVSKDLFTQVQEAASG-----------SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 722 (1065)
Q Consensus 654 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 722 (1065)
.+..+...+...|+.+.-..+++.+...... ++.--...++..+.++|...|++..|+.+.....+.|+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 4455666777888888888888776655432 11112356777778888888888888888888888776
Q ss_pred CCCcHHHHHHH
Q 001509 723 YNTDAQILLYL 733 (1065)
Q Consensus 723 ~~~~~~~~~~l 733 (1065)
-+-...++..|
T Consensus 84 I~i~~~~W~~L 94 (126)
T PF12921_consen 84 IPIPKEFWRRL 94 (126)
T ss_pred CCCCHHHHHHH
Confidence 44444444443
No 478
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.65 E-value=1.2e+02 Score=33.37 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=4.1
Q ss_pred hHHHHhhHHH
Q 001509 605 SYATLSLGNW 614 (1065)
Q Consensus 605 ~~~~~~lg~~ 614 (1065)
.+....-|..
T Consensus 171 ~Fs~~~tGR~ 180 (440)
T KOG2357|consen 171 VFSSYATGRV 180 (440)
T ss_pred hHHHHhcchh
Confidence 3333344444
No 479
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.46 E-value=38 Score=22.09 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=17.6
Q ss_pred HHhHHHHHHHhcCCcHHHHHHHHHHHH
Q 001509 654 AANGAGVVLAEKGQFDVSKDLFTQVQE 680 (1065)
Q Consensus 654 a~~~la~~~~~~g~~~~A~~~~~~~~~ 680 (1065)
.++.+...+.+.|+++.|..+|..+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666667777777777666655
No 480
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.19 E-value=7.8e+02 Score=31.59 Aligned_cols=180 Identities=14% Similarity=0.033 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc---------CCCCCH-----HHHHHHHHHHHHcCCH
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA---------GEEVPI-----EVLNNIGVIHFEKGEF 441 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~---------~~~~~~-----~~~~~la~~~~~~g~~ 441 (1065)
+...+.+|.+|...|...+|+.+|.++..-.........+.... |+...+ ..|.....++-..+-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 56677889999999999999999999988655544333333321 222221 2233334445555666
Q ss_pred HHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHH
Q 001509 442 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 521 (1065)
Q Consensus 442 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 521 (1065)
+.++++-..|++..+ ...|..+.+...+-.-...+|.+.+|
T Consensus 1000 E~vcQlA~~AIe~l~---------------------------------------dd~ps~a~~~t~vFnhhldlgh~~qA 1040 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLP---------------------------------------DDNPSVALISTTVFNHHLDLGHWFQA 1040 (1480)
T ss_pred HHHHHHHHHHHHhCC---------------------------------------CcchhHHHHHHHHHHhhhchhhHHHH
Confidence 666666666665211 13355566666666777788888877
Q ss_pred HHHHHHHHHHCCCh---HHHHHHHHHHHHHcCCHHHHH------------H-HHHHHHHHCC-CChHHHHHhhhhhcccc
Q 001509 522 SVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSI------------E-LVNEALKVNG-KYPNALSMLGDLELKND 584 (1065)
Q Consensus 522 ~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~------------~-~~~~al~~~p-~~~~~~~~l~~~~~~~g 584 (1065)
...+- .+|+. .+++..+..+++..|.++.-. . ++..+-...| ..+..|..|--.+...+
T Consensus 1041 y~ai~----~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~Rh 1116 (1480)
T KOG4521|consen 1041 YKAIL----RNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARH 1116 (1480)
T ss_pred HHHHH----cCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhc
Confidence 65433 45654 457777888888888655321 1 2222222233 23456667777788888
Q ss_pred chHHHHHH-HHHhhh
Q 001509 585 DWVKAKET-FRAASD 598 (1065)
Q Consensus 585 ~~~~A~~~-~~~al~ 598 (1065)
+|.+|-.+ |+.+..
T Consensus 1117 N~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1117 NFRKAATVMYEYAMR 1131 (1480)
T ss_pred chhHHHHHHHHHHHH
Confidence 98877654 444444
No 481
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.17 E-value=1.3e+03 Score=34.02 Aligned_cols=100 Identities=11% Similarity=-0.056 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-H--HHHH-HHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 001509 133 GKGQLLLAKGEVEQASSAFKIVLEAD-----RDN-V--PALL-GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1065)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~-~--~a~~-~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1065)
..|..|.+.|.+++|...|+++.... |-+ . ..|. ....|.....+|+--.++- ..-. ....+
T Consensus 2487 ~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~-----k~~~----~~~ll 2557 (3550)
T KOG0889|consen 2487 MVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFG-----KHEG----NYELL 2557 (3550)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccC----Cceee
Confidence 45788889999999999999986432 211 1 1111 1222333334444333322 1111 12345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001509 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1065)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1065)
-.|.++.-++..-...+.......++....-..+..++
T Consensus 2558 le~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 2595 (3550)
T KOG0889|consen 2558 LECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAF 2595 (3550)
T ss_pred eehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHH
Confidence 57788888888888888888887777654444444333
No 482
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.68 E-value=1.3e+02 Score=33.17 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001509 793 VAELENAVRVFSHLSAA 809 (1065)
Q Consensus 793 ~~~l~~a~~~~~~l~~~ 809 (1065)
+..|..+.+.+..+.-.
T Consensus 286 ~~~l~k~~~~ieyih~S 302 (440)
T KOG2357|consen 286 VSQLNKYGDNIEYIHFS 302 (440)
T ss_pred HHHHHHHHhhhheEEee
Confidence 44555566666555433
No 483
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.48 E-value=1.1e+02 Score=33.87 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhH------HHHHH-HHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001509 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVR------YERIA-ILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1065)
Q Consensus 43 ~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~------~~~~~-~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~ 115 (1065)
+...|.+.+...+|++|+.+|-.+-. +|..=. -++.. +-.-+.|+|+.+.++..- ...+..+..|.+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe-----~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL-~DAe~RL~ra~k 239 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADE-----SFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCL-PDAEVRLVRARK 239 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH-----HHHhhhHHHHHhhcchhhhhcchhheehhhcccccC-ChHHHHHHHHHH
Confidence 46788889999999999999987632 333211 11222 223468999988876521 112334445555
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGE--VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
.|.++...+ +..++.-+|. .+.|+- ....+..|.+.|.+|+-++|...++.+...
T Consensus 240 gf~~syGen---------l~Rl~~lKg~~spEraL~------------lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 240 GFERSYGEN---------LSRLRSLKGGQSPERALI------------LRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhhh---------hHhhhhccCCCChhHHHH------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 554443221 0111111111 111110 123455677777777777777777766543
No 484
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=44.33 E-value=77 Score=25.43 Aligned_cols=16 Identities=50% Similarity=0.646 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001509 858 RQAALAEEARRKAEEQ 873 (1065)
Q Consensus 858 ~~~~~~~~~~~~~~e~ 873 (1065)
++...+++.+|+++++
T Consensus 26 k~eLk~~ee~r~e~e~ 41 (70)
T PF13025_consen 26 KQELKAEEEKRKEEER 41 (70)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3333344444444443
No 485
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=44.14 E-value=1.4e+02 Score=24.51 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHH
Q 001509 689 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 768 (1065)
Q Consensus 689 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla 768 (1065)
.++..+...|.-+-..|++.+|+.+|+.++.. |.++++..|+++...+-..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~-----------------------------L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV-----------------------------LSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------------------------HHHHHHhCCChHHHHHHHH
Q ss_pred HHhhHH
Q 001509 769 VAMQKF 774 (1065)
Q Consensus 769 ~~~~~~ 774 (1065)
.+..-+
T Consensus 55 ki~eY~ 60 (75)
T cd02682 55 MINEYK 60 (75)
T ss_pred HHHHHH
No 486
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.42 E-value=2.6e+02 Score=25.62 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 669 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 718 (1065)
Q Consensus 669 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 718 (1065)
..+..+|..+....-+. ..+..|...|.++...|++.+|..+|+.++
T Consensus 80 ~~~~~if~~l~~~~IG~---~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGT---KLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp SHHHHHHHHHHHHTTST---TBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccH---HHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 38888888887766554 567788888888888899999888888764
No 487
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=43.13 E-value=2.9e+02 Score=26.84 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001509 821 KINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAAR 858 (1065)
Q Consensus 821 ~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~~ 858 (1065)
.+..|...+.+-+..+......++....+..+++..++
T Consensus 50 ~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar 87 (167)
T PRK08475 50 FYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAK 87 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444444444444333
No 488
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.05 E-value=45 Score=27.30 Aligned_cols=17 Identities=24% Similarity=0.685 Sum_probs=10.7
Q ss_pred HcCChHHHHHHHHHHHH
Q 001509 174 NRGRYSDSLEFYKRALQ 190 (1065)
Q Consensus 174 ~~g~~~~Al~~~~~al~ 190 (1065)
..|+|++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 45666666666666654
No 489
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=43.05 E-value=1.3e+02 Score=32.92 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 001509 795 ELENAVRVFSHL 806 (1065)
Q Consensus 795 ~l~~a~~~~~~l 806 (1065)
.+...+.++=.+
T Consensus 232 ~~~~l~~~v~~l 243 (321)
T PF07946_consen 232 ALEPLLKLVFYL 243 (321)
T ss_pred HHHHHHHHHHHH
Confidence 344444433333
No 490
>PLN03086 PRLI-interacting factor K; Provisional
Probab=42.81 E-value=1.6e+02 Score=34.64 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001509 845 REEQQNRQRQEAARQAALAEEARRKA 870 (1065)
Q Consensus 845 ~~e~~~~~k~e~~~~~~~~~~~~~~~ 870 (1065)
+-.++.|.|++.+|+++++..++|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (567)
T PLN03086 18 ERKQRAKLKLERERKAKEEAAKQREA 43 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666554443333
No 491
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.78 E-value=4.3e+02 Score=27.88 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc--CCHH
Q 001509 145 EQASSAFKIVLEADRDNVPALLGQACVEFN--------RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL--GQLG 214 (1065)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~--------~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~--g~~~ 214 (1065)
..|++.-...+..+|.....|...-.+... ..-.+.-+.++..+++-+|.+ -.+|...-.|+... .++.
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~-YqiW~HR~~~Le~~p~~~~~ 127 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKN-YQIWHHRQWMLELFPKPSWG 127 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCch-hhhhHHHHHHHHhCCCcccc
Confidence 455666666666666655555444444333 222456678889999999998 55666666665544 5677
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccchHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001509 215 KARQAFQRALQLDPENVEALVALAVMDLQ---ANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1065)
Q Consensus 215 ~A~~~~~~al~~~p~~~~a~~~la~~~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 274 (1065)
.-....++++..||.|...|...-.+... .++...+...+++-..++..++.|..+|...
T Consensus 128 rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 128 RELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred hhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 77888899999999988776544333311 1112226666788888888999999888776
No 492
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=42.67 E-value=1.9e+02 Score=26.17 Aligned_cols=68 Identities=18% Similarity=0.032 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC---Cc----------HHHHHHHHHHHHHhhcHHHHHHHHH----HHHHh
Q 001509 694 WINLAHVYFAQGNFALAMKMYQNCLRKFYYN---TD----------AQILLYLARTHYEAEQWQDCKKSLL----RAIHL 756 (1065)
Q Consensus 694 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~----------~~~~~~lg~~~~~~g~~~~A~~~~~----kal~~ 756 (1065)
+..+|...++.+++-.++-.|++|+.....- .. +....+||..|...|+.+-.+++++ +++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888888888888999999888653221 11 3445679999999999999999885 55666
Q ss_pred CCCCc
Q 001509 757 APSNY 761 (1065)
Q Consensus 757 ~P~~~ 761 (1065)
-|.-+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 77654
No 493
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=42.58 E-value=4.7e+02 Score=28.29 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=26.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHH
Q 001509 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1065)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1065)
+..+...+.++.|+..++..+.............+.++.++...|.++-|..+|..+.
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~ 277 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALD 277 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555554332222222223333444555555555555555554444
No 494
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=42.01 E-value=16 Score=44.16 Aligned_cols=7 Identities=29% Similarity=0.430 Sum_probs=3.2
Q ss_pred ccccccc
Q 001509 923 EVGHSEK 929 (1065)
Q Consensus 923 ~~~~~~~ 929 (1065)
+||||..
T Consensus 431 k~gg~~~ 437 (803)
T PLN03083 431 KGGTAES 437 (803)
T ss_pred CCCCCCC
Confidence 4554433
No 495
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.86 E-value=1.3e+02 Score=30.15 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 711 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 711 ~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
++..++.++. .+++.++..++.++...|+.++|.....++..++|.+
T Consensus 131 ~~~a~~~l~~---~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 131 IEWAERLLRR---RPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3344444443 5678999999999999999999999999999999943
No 496
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.78 E-value=2.5e+02 Score=24.85 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=50.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCH
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1065)
+|.+-.-....++|..+.+-.-........+.+.....+.++|+|++|+. . ...... +++--..+.|-+++|-.
T Consensus 12 lAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl---~--~~~~~~-pdL~p~~AL~a~klGL~ 85 (116)
T PF09477_consen 12 LALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALL---L--PQCHCY-PDLEPWAALCAWKLGLA 85 (116)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHH---H--HTTS---GGGHHHHHHHHHHCT-H
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH---h--cccCCC-ccHHHHHHHHHHhhccH
Confidence 33333444567888777665544443344566777788999999999932 1 112112 33344568889999999
Q ss_pred HHHHHHHHHH
Q 001509 214 GKARQAFQRA 223 (1065)
Q Consensus 214 ~~A~~~~~~a 223 (1065)
.++...+.+.
T Consensus 86 ~~~e~~l~rl 95 (116)
T PF09477_consen 86 SALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888864
No 497
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=41.18 E-value=2.7e+02 Score=29.64 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH---------HHHHHHHHHHHhCCCCchHHHHHHHH
Q 001509 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS---------DSLEFYKRALQVHPSCPGAIRLGIGL 205 (1065)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~---------~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1065)
...++..++|++=...|.+......++...-..........+-++ .-+..++.-+...|++ ..+++.+|.
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~S-y~A~La~g~ 85 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKS-YHAHLAMGM 85 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCC-hHHHHHHHH
Q ss_pred HHHHcC----------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 001509 206 CRYKLG----------------------QLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1065)
Q Consensus 206 ~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1065)
++.... -.+.|...+.+++.++|..+.+...+..+....|.
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
No 498
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.14 E-value=27 Score=41.33 Aligned_cols=124 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred cccccccCCcccccccCcCccccchhhhhcccCCCCCCcchhccCCCCCCCCCCCCCCchhhhhhhhHHHhcCCCCCCCC
Q 001509 927 SEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 1006 (1065)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1065)
.++..||++|+++|.......=++.+++...--+..-++.++.+... +-+....+++.++-+-----.-+++|
T Consensus 812 ~~k~~~kq~~~~~k~~~ed~~~Ee~eeel~~~~~~~~~e~~ddd~e~-------e~~~e~~~k~~~d~~~D~d~~~dedd 884 (988)
T KOG2038|consen 812 SKKTVKKQNKDKDKESAEDVDDEEFEEELWRFEDGSLPEEEDDDYEF-------EFGAEKDDKNKKDMTSDDDVDADEDD 884 (988)
T ss_pred hhhhhhccccccchhhhccCchHHHHHHHHHhcCCcCcccccchhhh-------hcCchhhchhhhcccccccccccccc
Q ss_pred CCCCCCchHHHHhhhcCCCCCChhhhhcCCCCcchhccCcchhhccCCCCCCCCCCCCC
Q 001509 1007 DEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRENDHKSNGGAALDDD 1065 (1065)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1065)
|++..+-. |+.+++++...++-.-+.+..+.+.+-.+-....+.+..++|+
T Consensus 885 d~d~~s~~--------~~e~~~~Ed~dEdi~~~~D~~~D~~d~~d~~e~e~d~~~~~e~ 935 (988)
T KOG2038|consen 885 DEDENSLG--------SEEDGGEEDDDEDIGDSDDDEDDTSDAEDDFEDEDDDEVDDED 935 (988)
T ss_pred ccchhccc--------Ccccccccccchhccccccccccchhhcccccccccccccccc
No 499
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=40.71 E-value=6.4e+02 Score=29.30 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHH-HHHHHcCCHHHHHHHHHHHH-HhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKG-QLLLAKGEVEQASSAFKIVL-EADRDN-VPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g-~~~~~~g~~~~A~~~~~~al-~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1065)
+..++.++-...++....|..++ .+++..|+..+|..++.++- .+.|.. ...-+..|.+.....++..|+..+.+..
T Consensus 47 s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~ 126 (604)
T COG3107 47 SQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLL 126 (604)
T ss_pred HHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcc
Q ss_pred HhCCCCchHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh---------------------------CCC--CHHHHH
Q 001509 190 QVHPSCPGAIRLGIGLCRYKLGQ-----LGKARQAFQRALQL---------------------------DPE--NVEALV 235 (1065)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~---------------------------~p~--~~~a~~ 235 (1065)
...-.....+++..+.+-...++ .-+++-.+..++.- +++ ....|+
T Consensus 127 ~~~ls~~Qq~Ry~q~~a~a~ea~~~~~~a~rari~~~~lL~~k~~q~nid~tW~ll~~~~~~~VIn~sa~e~~~~L~GWL 206 (604)
T COG3107 127 PADLSQNQQARYYQARADALEARGDSIDAARARIAQDPLLSGKAKQANIDKTWQLLSEQANTGVINNSADEGNAALQGWL 206 (604)
T ss_pred hhhcCHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhccchhHHHhHHHHHHHhhhhccccceecccCCcccccchHH
Q ss_pred HHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001509 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1065)
Q Consensus 236 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 272 (1065)
.|+.++...+. +...-..-+......+|.+|.+.+
T Consensus 207 ~L~rv~~~~~~--~p~qlk~~i~~Wq~~yPqhPaA~~ 241 (604)
T COG3107 207 DLARVYKDNGS--DPPQLKAGIEDWQKRYPQHPAAKM 241 (604)
T ss_pred HHHHHHHhccc--CHHHHHHHHHHHHhcCCCCchhhh
No 500
>PTZ00121 MAEBL; Provisional
Probab=39.31 E-value=3.7e+02 Score=35.11 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001509 818 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHF 897 (1065)
Q Consensus 818 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1065)
+..+.....+--......+.+..+.+++.|...+...+..++.....+..|+.+++++.+++++.++++++.-....+..
T Consensus 1138 ~~Rr~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~Rr~EElRraEEaRkaEEaRRlEE~RraEEA 1217 (2084)
T PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEA 1217 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred HHHHhh
Q 001509 898 QRVKEQ 903 (1065)
Q Consensus 898 ~~~~~~ 903 (1065)
+...+.
T Consensus 1218 RraEEE 1223 (2084)
T PTZ00121 1218 RKAEDA 1223 (2084)
T ss_pred HHHHHH
Done!