Query 001509
Match_columns 1065
No_of_seqs 1439 out of 4792
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 15:52:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001509.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_812-815//hhsearch_pdb/001509hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 346.1 43.2 508 126-772 82-595 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 342.1 46.8 485 82-701 83-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 317.9 48.6 177 112-292 17-193 (388)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 314.5 50.5 268 133-410 4-271 (388)
5 3fp2_A TPR repeat-containing p 1.0 1 1 300.0 43.1 456 128-764 25-499 (537)
6 3fp2_A TPR repeat-containing p 1.0 1 1 297.7 39.0 458 79-683 21-493 (537)
7 2gw1_A Mitochondrial precursor 1.0 1 1 295.2 43.5 473 128-770 6-492 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 287.7 45.3 469 81-697 4-489 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 268.7 44.0 363 112-582 10-375 (450)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 264.7 43.9 225 507-770 148-372 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=346.09 Aligned_cols=508 Identities=12% Similarity=0.055 Sum_probs=351.2
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99445999999999819999999999999992999999999999999984991999999999997399993689988999
Q 001509 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1065)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1065)
.+...|..++..+...|++++|+..|.+++...|+ ...+..++.++...|++.+|+..|.+++.. |.+ ..++..++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRS-SACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCC-HHHHHHHHH
T ss_conf 89999999999998745834799999999960899-357999999999747699999999987335-456-508999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99981998999999999997399999999999999987120675999999999999859998999999999999729978
Q 001509 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1065)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1065)
+|...|++++|+..|++ ..|...... +. ...+
T Consensus 159 ~~~~~g~~~~A~~~~~~---~~~~~~~~~---~~--~~~~---------------------------------------- 190 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGE---TNPFRKDEK---NA--NKLL---------------------------------------- 190 (597)
T ss_dssp HHHHTTCHHHHHHHHCS---SCTTC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHC---CCCCCCCCC---CC--CCCC----------------------------------------
T ss_conf 99988669999999842---488632232---34--3343----------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH-
Q ss_conf 9999999998504789882589999999999729999999999999982089998433155299999980998999999-
Q 001509 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN- 364 (1065)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~- 364 (1065)
......+....+++.+|.+|...|++++|+..|.+++.. .|....++..++.++...+....+...
T Consensus 191 ----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (597)
T 2xpi_A 191 ----------MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLK 257 (597)
T ss_dssp ----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ----------CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf ----------211235125899999889999839989999999999972---9325699999998503461567899986
Q ss_pred --HHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf --99999759996-999999999999729999999999999970999499999999809989999999899999971998
Q 001509 365 --FEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 441 (1065)
Q Consensus 365 --~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~ 441 (1065)
+.......+.. ...+..++..|...|++++|+..|++++.. |.+. .+++.++.++...|++
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~---------------~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS---------------DLLLCKADTLFVRSRF 321 (597)
T ss_dssp SCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH---------------HHHHHHHHHHHHTTCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHH---------------HHHHHHHHHHHHHCCH
T ss_conf 57742344308899999999999980731399999999876438-8309---------------9999999999984689
Q ss_pred HHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99999999997033012101355510353334567775556654300138887678973168999999999970895999
Q 001509 442 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 521 (1065)
Q Consensus 442 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 521 (1065)
++|+..|++++. ..|....++..++.++...|++++|
T Consensus 322 ~~A~~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 322 IDVLAITTKILE-------------------------------------------IDPYNLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp HHHHHHHHHHHH-------------------------------------------HCTTCCTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHH-------------------------------------------CCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 999999999997-------------------------------------------2955379999999999982777799
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999887892999999999999809988999999999987799958999861453016653999999999430479
Q 001509 522 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 601 (1065)
Q Consensus 522 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 601 (1065)
...+..++...|.+..++..++.++...|++++|+.+|++++...|.+..+|..++.++...|++++|+..|++++...|
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 359 YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998518354799999999999835699999999999872977789999999999975777999999999998681
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 87768998668899999875310170587655999999999998528754699858989998049908899999999998
Q 001509 602 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 681 (1065)
Q Consensus 602 ~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 681 (1065)
. +..++..++.+ |... |++++|+..|++++...|.++.+++.++.++...|++++|+.+|++++..
T Consensus 439 ~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 439 G-THLPYLFLGMQ-HMQL------------GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp T-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 3-43899999999-9985------------79999999999999848887679999999999818999999999999985
Q ss_pred HCCC-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC
Q ss_conf 2489-88863-579999999999828999999999999987437996999999999999820199999999999983999
Q 001509 682 ASGS-VFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 682 ~p~~-~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
.|.. ..|+. ..+|..+|.+|...|++++|+..|++++.. .+.++.++..+|.+|...|++++|...|++++.+.|+
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 32345453549999999999999804799999999999973--8997389999999999817899999999999720888
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 8204788999856
Q 001509 760 NYTLRFDAGVAMQ 772 (1065)
Q Consensus 760 ~~~~~~nla~~~~ 772 (1065)
++.++++++.++.
T Consensus 583 ~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 583 EIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHH
T ss_conf 7489999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=342.09 Aligned_cols=485 Identities=14% Similarity=0.059 Sum_probs=307.9
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999997002221366648999999999999850299994459999999998199999999999999929999
Q 001509 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1065)
Q Consensus 82 ~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1065)
.+..+..++..|...|+.. +|+..|.+++...| +...++.+|.++...|++++|+..|.+++.. |.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 149 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYK-----------CAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRS 149 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTC
T ss_pred HHHHHHHHHHHHHHCCCCH-----------HHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCC
T ss_conf 9999999999998745834-----------79999999996089-9357999999999747699999999987335-456
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999999998499199999999999739999------------------3689988999999819989999999999
Q 001509 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1065)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1065)
+.++..++.++...|++++|+..|++. .|.. ...+++.+|.++...|++++|+..|+++
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 508999999999886699999998424---88632232343343211235125899999889999839989999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 973999999999999999871206759999999---99999859998999999999999729978999999999850478
Q 001509 224 LQLDPENVEALVALAVMDLQANEAAGIRKGMEK---MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300 (1065)
Q Consensus 224 l~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 300 (1065)
+..+|.+..++..++.++...+. ...+... +...... ++..
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~l~~~~~~~~---~~~~------------------------------ 270 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTAD---EEWDLVLKLNYSTYSKE---DAAF------------------------------ 270 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHH---HHHHHHHHSCTHHHHGG---GHHH------------------------------
T ss_pred HHHCCHHHHHHHHHHHHHCCCCH---HHHHHHHHCCCCCCCCC---HHHH------------------------------
T ss_conf 97293256999999985034615---67899986577423443---0889------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 98825899999999997299999999999999820899984331552999999809989999999999975999699999
Q 001509 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1065)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1065)
....+..++..|...|++++|+..|.+++.. +.....++.++.++...|++++|+..|++++...|.+..++.
T Consensus 271 ---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 343 (597)
T 2xpi_A 271 ---LRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343 (597)
T ss_dssp ---HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred ---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf ---9999999999980731399999999876438----830999999999999846899999999999972955379999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999997299999999999999709994999999998099899999998999999719989999999999703301210
Q 001509 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 460 (1065)
Q Consensus 381 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 460 (1065)
.++.++...|++++|+..+.+++...|.+. .+++.+|.+|...|++++|+.+|.+++.
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 401 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPEKA---------------VTWLAVGIYYLCVNKISEARRYFSKSST------- 401 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHH-------
T ss_conf 999999982777799999999985183547---------------9999999999983569999999999987-------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 13555103533345677755566543001388876789731689999999999708959999999999988789299999
Q 001509 461 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 540 (1065)
Q Consensus 461 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 540 (1065)
..|....++..++.+|...|++++|+..|++++...|.+..++.
T Consensus 402 ------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 402 ------------------------------------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp ------------------------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred ------------------------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf ------------------------------------29777899999999999757779999999999986813438999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC----CCC--HHHHHHHHHH
Q ss_conf 9999999809988999999999987799958999861453016653999999999430479----877--6899866889
Q 001509 541 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD----GKD--SYATLSLGNW 614 (1065)
Q Consensus 541 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~~d--~~~~~~lg~~ 614 (1065)
.++.++...|++++|+.+|++++...|.++.++..++.++...|++++|+..|++++...+ .++ ...+..+|.+
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999998579999999999999848887679999999999818999999999999985323454535499999999999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99998753101705876559999999999985287546998589899980499088999999999982489888635799
Q 001509 615 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 694 (1065)
Q Consensus 615 ~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 694 (1065)
|... |++++|+..|++++..+|.+..++..++.+|...|++++|+..|+++++..| +++.++
T Consensus 526 -~~~~------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~ 587 (597)
T 2xpi_A 526 -YRKL------------KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-----NEIMAS 587 (597)
T ss_dssp -HHHT------------TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHH
T ss_pred -HHHH------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-----CCHHHH
T ss_conf -9980------------4799999999999973899738999999999981789999999999972088-----874899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 001509 695 INLAHVY 701 (1065)
Q Consensus 695 ~~lg~~~ 701 (1065)
..++.+|
T Consensus 588 ~~l~~~~ 594 (597)
T 2xpi_A 588 DLLKRAL 594 (597)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
T ss_conf 9999987
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=317.94 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999850299994459999999998199999999999999929999999999999999849919999999999973
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
+|+..+.+++..+|+++.++..+|.+++..|++++|...+..++..+|.++.++..+|.++...|++++|+..|++++..
T Consensus 17 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 17 AAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999998497889999999999998689999999999997619786699999999998779999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99993689988999999819989999999999973999999999999999871206759999999999998599989999
Q 001509 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1065)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1065)
.|+. ...+..+|.++...|++++|+..|.+++..+|++..++..+|.++...|+ +++|+..+.+++..+|.++.++
T Consensus 97 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 172 (388)
T 1w3b_A 97 KPDF-IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR---LEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp CTTC-HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9653-99999999999985899999999999997598968999999999998468---9999999999987298978999
Q ss_pred HHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999997299789999999
Q 001509 272 NYLANHFFFTGQHFLVEQLTE 292 (1065)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~ 292 (1065)
..++.++...|++++|+..++
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999998599999999999
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=314.53 Aligned_cols=268 Identities=20% Similarity=0.270 Sum_probs=134.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999998199999999999999929999999999999999849919999999999973999936899889999998199
Q 001509 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1065)
.+|..++..|++++|+..|..++..+|+++.++..++.+++..|++++|...++.++..+|.. ..+++.+|.++...|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCC
T ss_conf 579999877999999999999998497889999999999998689999999999997619786-6999999999987799
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 89999999999973999999999999999871206759999999999998599989999999999997299789999999
Q 001509 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1065)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1065)
+++|+..|++++..+|++..++..++.++...|+ +++|+..+.+++..+|++..++..++.++...|++++|...+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999987496539999999999998589---9999999999997598968999999999998468999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99850478988258999999999972999999999999998208999843315529999998099899999999999759
Q 001509 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (1065)
Q Consensus 293 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (1065)
+++.. .|..+.++..+|.++...|++++|+..|.+++. ..|....++..+|.++...|++++|+..|.+++...
T Consensus 160 ~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 160 KAIET---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99872---989789999999999985999999999999985---598867999999999998578999999999998529
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 99699999999999972999999999999997099949
Q 001509 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 410 (1065)
|+++.++..+|.++...|++++|+..|++++...|.++
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 271 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 68789999999999986889999999999986499988
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=300.05 Aligned_cols=456 Identities=14% Similarity=0.131 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 44599999999981999999999999999299999999999999998499199999999999739999368998899999
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++.+|+..|++++..+|++ ..+++.+|.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-SKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHH
T ss_conf 99999999999986429999999999986389984899999999998689999999999998609862-89999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 98199899999999999739999999999999998712067599999999999985999899999999999972997899
Q 001509 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1065)
..+|++++|+..|+ ++...|+....+.. .+...+. ...++..+..++...|......
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~a~~~~~~~l~~~~~~~~~~---------------- 160 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNL---NKQAMKVLNENLSKDEGRGSQV---------------- 160 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHH---HHHHHHHHHHHCC-------CC----------------
T ss_pred HHCCCHHHHHHHHH-HHHCCCCCCHHHHH---HHHHHHH---HHHHHHHHHHHHHHCCCCCCCC----------------
T ss_conf 98389999999999-98648787858899---9998778---9889999999997474545434----------------
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998504789882589999999999729999999999999982089998433155299999980998999999999
Q 001509 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1065)
Q Consensus 288 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1065)
.|. ......+....+...++. .+..
T Consensus 161 -------------~~~-----~~~~~~~~~~~~~~~~~~-------------------------------------~~~~ 185 (537)
T 3fp2_A 161 -------------LPS-----NTSLASFFGIFDSHLEVS-------------------------------------SVNT 185 (537)
T ss_dssp -------------CCC-----HHHHHHHHHTSCHHHHHH-------------------------------------TSCC
T ss_pred -------------CCH-----HHHHHHHHHHCCHHHHHH-------------------------------------HHHH
T ss_conf -------------506-----757999997447499999-------------------------------------8763
Q ss_pred HHHHCCCCHHHHHHHH--------HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9975999699999999--------99997299999999999999709994999999998099899999998999999719
Q 001509 368 VLEIYPDNCETLKALG--------HIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG 439 (1065)
Q Consensus 368 ~l~~~p~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g 439 (1065)
.....+........++ ......+++++|+..|++++...|.+......+ ..++..+|.++...|
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~--------~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA--------ALALCYTGIFHFLKN 257 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH--------HHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH--------HHHHHHHHHHHHHCC
T ss_conf 256461789999999878876402068888799999999999998787740445999--------999999999987545
Q ss_pred CHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 98999999999970330121013555103533345677755566543001388876789731689999999999708959
Q 001509 440 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 519 (1065)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 519 (1065)
++++|+..|.+++. ..|. ..+++.+|.++...|+++
T Consensus 258 ~~~~A~~~~~~~~~-------------------------------------------~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 258 NLLDAQVLLQESIN-------------------------------------------LHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp CHHHHHHHHHHHHH-------------------------------------------HCCC-HHHHHHHHHHTCCSSCCH
T ss_pred CHHHHHHHHHHHHH-------------------------------------------CCCC-CHHHHHHHHHHHHHCCHH
T ss_conf 57899999999986-------------------------------------------6987-469999999999803799
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999998878929999999999998099889999999999877999589998614530166539999999994304
Q 001509 520 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 599 (1065)
Q Consensus 520 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 599 (1065)
+|+..+.+++...|.++.++..+|.++...|++++|+..+++++...|.++
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------------------- 344 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV----------------------------- 344 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS-----------------------------
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-----------------------------
T ss_conf 999999997545999879999999999866899999999999998599977-----------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 79877689986688999998753101705876559999999999985287546998589899980499088999999999
Q 001509 600 TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 679 (1065)
Q Consensus 600 ~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~ 679 (1065)
.++..+|.+ |... |++++|+..|.+++..+|.+..++..+|.++...|++++|+..|++++
T Consensus 345 ------~~~~~la~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 345 ------YPYIQLACL-LYKQ------------GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp ------HHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf ------999999999-9984------------779999999999987399985999999999988378899999999998
Q ss_pred HHHCCCCCC-CCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 982489888-6357999999999982----------89999999999999874379969999999999998201999999
Q 001509 680 EAASGSVFV-QMPDVWINLAHVYFAQ----------GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 748 (1065)
Q Consensus 680 ~~~p~~~~~-~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 748 (1065)
...|..... .....++.+|.++... |++++|+..|++++.. .+.++.++..+|.++...|++++|..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 7097624468889999988999999764010022475799999999999974--99978999999999998514999999
Q ss_pred HHHHHHHHCCCCCCHH
Q ss_conf 9999998399982047
Q 001509 749 SLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 749 ~~~kal~~~P~~~~~~ 764 (1065)
.|++++.+.|++....
T Consensus 484 ~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 484 LFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHC--CHHHH
T ss_pred HHHHHHHHCCCCHHHH
T ss_conf 9999998689938888
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=297.71 Aligned_cols=458 Identities=14% Similarity=0.123 Sum_probs=277.1
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 89899999999999997002221366648999999999999850299994459999999998199999999999999929
Q 001509 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1065)
Q Consensus 79 ~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 158 (1065)
.......+..+|..++..|+.. +|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFN-----------EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC------------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 0788999999999999864299-----------99999999986389984899999999998689999999999998609
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH---H
Q ss_conf 9999999999999998499199999999999739999368998899999981998999999999997399999999---9
Q 001509 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---V 235 (1065)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~ 235 (1065)
|+++.+++.+|.++...|++.+|+..|+ ++...|+.... + ...+...+....|+..+..++...|...... .
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA-S---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCCCCHH-H---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 8628999999999998389999999999-98648787858-8---99999877898899999999974745454345067
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999987120675999999999999859998999999999999729978999999999850478988258999999999
Q 001509 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1065)
Q Consensus 236 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1065)
.....+....+ ...++..+.......+... .....++..+
T Consensus 165 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~l~~~~ 204 (537)
T 3fp2_A 165 TSLASFFGIFD---SHLEVSSVNTSSNYDTAYA-------------------------------------LLSDALQRLY 204 (537)
T ss_dssp HHHHHHHHTSC---HHHHHHTSCCCCSSCSSHH-------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHCC---HHHHHHHHHHCCCCCCHHH-------------------------------------HHHHHHHHHH
T ss_conf 57999997447---4999998763256461789-------------------------------------9999998788
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHH
Q ss_conf 97299999999999999820899984331552999999809989999999999975999699-------99999999997
Q 001509 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-------TLKALGHIYVQ 388 (1065)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~ 388 (1065)
. ...+......+++.+|+..|++++...|.+.. ++..+|.++..
T Consensus 205 ~-----------------------------~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 205 S-----------------------------ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp T-----------------------------CSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7-----------------------------64020688887999999999999987877404459999999999999875
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCCCHH
Q ss_conf 29999999999999970999499999999809989999999899999971998999999999970330121013555103
Q 001509 389 LGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 468 (1065)
Q Consensus 389 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 468 (1065)
.|++++|+..+++++...|. . ..+..+|.++...|++++|+..|.+++.
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------- 304 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-P---------------NSYIFLALTLADKENSQEFFKFFQKAVD--------------- 304 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-H---------------HHHHHHHHHTCCSSCCHHHHHHHHHHHH---------------
T ss_pred CCCHHHHHHHHHHHHHCCCC-C---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---------------
T ss_conf 45578999999999866987-4---------------6999999999980379999999999754---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 53334567775556654300138887678973168999999999970895999999999998878929999999999998
Q 001509 469 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 548 (1065)
Q Consensus 469 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 548 (1065)
..|..+.++..+|.++...|++++|+..+.+++...|.+..++..+|.++..
T Consensus 305 ----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 305 ----------------------------LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp ----------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred ----------------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf ----------------------------5999879999999999866899999999999998599977999999999998
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 099889999999999877999589998614530166539999999994304798776-----899866889999987531
Q 001509 549 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS-----YATLSLGNWNYFAALRNE 623 (1065)
Q Consensus 549 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~-----~~~~~lg~~~y~~~~~~~ 623 (1065)
.|++++|+.++++++...|.++.++..+|.++...|+++.|+..|.+++...|.... ..+..++.+ |......
T Consensus 357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~- 434 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI-LARQSSQ- 434 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH-HHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHHC-
T ss_conf 47799999999999873999859999999999883788999999999987097624468889999988999-9997640-
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 017058765599999999999852875469985898999804990889999999999824
Q 001509 624 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 624 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
.......|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++...|
T Consensus 435 -~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 435 -DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf -10022475799999999999974999789999999999985149999999999998689
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=295.15 Aligned_cols=473 Identities=14% Similarity=0.134 Sum_probs=281.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 44599999999981999999999999999299999999999999998499199999999999739999368998899999
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
+..++.+|..++..|++++|+..|++++..+| ++.++..+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHH
T ss_conf 79999987899986027899999999985592-27899868899998854999999998776069378-99999888999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 98199899999999999739999999999999998712067599999999999985999899999999999972997899
Q 001509 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1065)
..+|++++|+..|.+++...|.+......+..............+++..+..+... |......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~---------------- 146 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQ---------------- 146 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCC----------------
T ss_conf 98766888999999999559875113789999999999999999999989999876-6512677----------------
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998504789882589999999999729999999999999982089998433155299999980998999999999
Q 001509 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1065)
Q Consensus 288 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1065)
+ ..+ .....+..|..... ..+. +.+..+... .
T Consensus 147 --------------~-------~~~------------------~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~--~ 178 (514)
T 2gw1_A 147 --------------P-------AKE------------------RKDKQENLPSVTSM-----ASFF--GIFKPELTF--A 178 (514)
T ss_dssp -------------------------------------------------CCCCHHHH-----HHHH--TTSCCCCCC--S
T ss_pred --------------H-------HHH------------------HHHHCCCCCHHHHH-----HHHH--HHCCHHHHH--H
T ss_conf --------------2-------467------------------88634478615899-----9998--625878888--8
Q ss_pred HHHHCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 997599969999999999997---2999999999999997-----0--99949999999980998999999989999997
Q 001509 368 VLEIYPDNCETLKALGHIYVQ---LGQIEKAQELLRKAAK-----I--DPRDAQARTLLKKAGEEVPIEVLNNIGVIHFE 437 (1065)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~ 437 (1065)
.+ ..|.+..++..+|.++.. .|++++|+.+|++++. . .|.+..
T Consensus 179 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 231 (514)
T 2gw1_A 179 NY-DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK-------------------------- 231 (514)
T ss_dssp SC-CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH--------------------------
T ss_pred HH-CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC--------------------------
T ss_conf 72-599588899998999987623322999999999999886654223810011--------------------------
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 19989999999999703301210135551035333456777555665430013888767897316899999999997089
Q 001509 438 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517 (1065)
Q Consensus 438 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 517 (1065)
..|....+++.+|.++...|+
T Consensus 232 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 232 -----------------------------------------------------------LKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHSSC
T ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHHHHHCCC
T ss_conf -----------------------------------------------------------482789999999999998789
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 59999999999988789299999999999980998899999999998779995899986145301665399999999943
Q 001509 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 597 (1065)
Q Consensus 518 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 597 (1065)
+++|+..+.+++...|. ..++..++.++...|++.+|+..+++++...|.++.++..+|.++...|+++.|+..|.+++
T Consensus 253 ~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 253 PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999863864-89999999999988889999999999861386778999999999998077999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 04798776899866889999987531017058765599999999999852875469985898999804990889999999
Q 001509 598 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 677 (1065)
Q Consensus 598 ~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 677 (1065)
...|. +..++..+|.+ |... |++++|+..|.+++...|.+..++..+|.++...|++++|+..|.+
T Consensus 332 ~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 332 ELDPE-NIFPYIQLACL-AYRE------------NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HTCSS-CSHHHHHHHHH-TTTT------------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHCHH-HHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 73850-28999999999-9986------------8999999999999987546778999999999878899999999999
Q ss_pred HHHHHCCCCC-CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 9998248988-8635799999999998---28999999999999987437996999999999999820199999999999
Q 001509 678 VQEAASGSVF-VQMPDVWINLAHVYFA---QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 753 (1065)
Q Consensus 678 ~~~~~p~~~~-~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ka 753 (1065)
++...|.... .....+++++|.++.. .|++++|+..|++++.. .+.++.++..+|.++...|++++|...|+++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99761233217899999999999986633258889999999999875--8555899999999999825799999999999
Q ss_pred HHHCCCCCCHHHHHHHH
Q ss_conf 98399982047889998
Q 001509 754 IHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 754 l~~~P~~~~~~~nla~~ 770 (1065)
+.+.|+++.++..+...
T Consensus 476 ~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 476 ADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHCSSHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHH
T ss_conf 87661468899999999
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=287.74 Aligned_cols=469 Identities=15% Similarity=0.139 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999999700222136664899999999999985029999445999999999819999999999999992999
Q 001509 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 81 ~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
+.+..+..+|..++..|+.. +|+..|++++..+| ++.+++.+|.+++..|++++|+..|++++..+|.
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 71 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYD-----------DAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 45799999878999860278-----------99999999985592-2789986889999885499999999877606937
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999999998499199999999999739999368998899999--9819989999999999973999999999999
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR--YKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
+..+++.+|.++...|++++|+..|++++...|.........+..+. ........++..+..+... |.........+
T Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 150 (514)
T 2gw1_A 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKE 150 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHH
T ss_conf 89999988899998766888999999999559875113789999999999999999999989999876-65126772467
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 9998712067599999999999985999899999999999972997899999999985047898825899999999997-
Q 001509 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS- 317 (1065)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~- 317 (1065)
........|....+...+ +.+..+... . .-..|.....++.+|.++..
T Consensus 151 ------------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~ 199 (514)
T 2gw1_A 151 ------------------RKDKQENLPSVTSMASFF-------GIFKPELTF-----A-NYDESNEADKELMNGLSNLYK 199 (514)
T ss_dssp ------------------------CCCCHHHHHHHH-------TTSCCCCCC-----S-SCCSSCHHHHHHHHHHHHHSS
T ss_pred ------------------HHHHCCCCCHHHHHHHHH-------HHCCHHHHH-----H-HHCCCCHHHHHHHHHHHHHHH
T ss_conf ------------------886344786158999998-------625878888-----8-725995888999989999876
Q ss_pred --CCCHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf --299999999999999820----89998433155299999980998999999999997599969999999999997299
Q 001509 318 --KGDYEKAGLYYMASVKEI----NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1065)
Q Consensus 318 --~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1065)
.|++++|+.+|.+++... ...|... ...|....++..+|.++...|+
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDE---------------------------KLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH---------------------------HHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC---------------------------CCCHHHHHHHHHHHHHHHHCCC
T ss_conf 2332299999999999988665422381001---------------------------1482789999999999998789
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHH
Q ss_conf 99999999999970999499999999809989999999899999971998999999999970330121013555103533
Q 001509 392 IEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 471 (1065)
Q Consensus 392 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 471 (1065)
+++|+..+++++...|. . .++..+|.++...|++++|+..+.+++.
T Consensus 253 ~~~A~~~~~~~l~~~~~-~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------ 298 (514)
T 2gw1_A 253 PLGAHEDIKKAIELFPR-V---------------NSYIYMALIMADRNDSTEYYNYFDKALK------------------ 298 (514)
T ss_dssp HHHHHHHHHHHHHHCCC-H---------------HHHHHHHHHHHTSSCCTTGGGHHHHHHT------------------
T ss_pred HHHHHHHHHHHHHHCCC-H---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------
T ss_conf 99999999999863864-8---------------9999999999988889999999999861------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 34567775556654300138887678973168999999999970895999999999998878929999999999998099
Q 001509 472 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 551 (1065)
Q Consensus 472 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 551 (1065)
..|....++..+|.++...|++++|+..+.+++...|.+..++..++.++...|+
T Consensus 299 -------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 299 -------------------------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK 353 (514)
T ss_dssp -------------------------TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC
T ss_pred -------------------------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
T ss_conf -------------------------3867789999999999980779999999999987385028999999999998689
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHH---HHHHH
Q ss_conf 88999999999987799958999861453016653999999999430479877-----68998668899999---87531
Q 001509 552 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD-----SYATLSLGNWNYFA---ALRNE 623 (1065)
Q Consensus 552 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d-----~~~~~~lg~~~y~~---~~~~~ 623 (1065)
+++|+.++++++...|.++.++..+|.++...|++++|+..|.+++...|... ..++..+|.+ |.. .
T Consensus 354 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~---- 428 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL-LTRNPTV---- 428 (514)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH-HHTSCCT----
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHC----
T ss_conf 99999999999987546778999999999878899999999999997612332178999999999999-8663325----
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 01705876559999999999985287546998589899980499088999999999982489888635799999
Q 001509 624 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 697 (1065)
Q Consensus 624 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 697 (1065)
|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++...| .++.++..+
T Consensus 429 --------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~ 489 (514)
T 2gw1_A 429 --------ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-----TMEEKLQAI 489 (514)
T ss_dssp --------THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-----CCHHHHHHH
T ss_conf --------8889999999999875855589999999999982579999999999987661-----468899999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=268.69 Aligned_cols=363 Identities=19% Similarity=0.164 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999850299994459999999998199999999999999929999999999999999849919999999999973
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
.+...+.+++..+|.++..++.+|..++..|++++|+..|.+++..+|.++.++..+|.+++..|++.+|+..|++++..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 44656423566537899999999999998799999999999999849716899999999999879979999999999844
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999368998899999981998999999999997399999---9999999999871206759999999999998599989
Q 001509 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1065)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1065)
.|.. ..++..+|.++..+|++++|+..|++++..+|.+. .++..++.++..
T Consensus 90 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------- 143 (450)
T 2y4t_A 90 KMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------- 143 (450)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-------------------------
T ss_conf 9874-89999999999986999999999999972499970168899999999999-------------------------
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999999729978999999999850478988258999999999972999999999999998208999843315529
Q 001509 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1065)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1065)
..++.+|.++...|++++|+.+|.+++.. .|....+++.+
T Consensus 144 -------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l 183 (450)
T 2y4t_A 144 -------------------------------------QRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWDAELRELR 183 (450)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_conf -------------------------------------99999999999868999999999999986---88976999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf 99999809989999999999975999699999999999972999999999999997099949999999980998999999
Q 001509 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVL 428 (1065)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~ 428 (1065)
|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|.+......+.... ....+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~ 260 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK---KLNKL 260 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHHHH
T ss_conf 999987799999999999999868898799999999999759999999999999875998089999999999---99999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98999999719989999999999703301210135551035333456777555665430013888767897316899999
Q 001509 429 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 508 (1065)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 508 (1065)
..+|.++...|++++|+.+|.+++...+. .......++..+
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------------------------------~~~~~~~~~~~l 301 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPS---------------------------------------IAEYTVRSKERI 301 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCS---------------------------------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCC---------------------------------------CHHHHHHHHHHH
T ss_conf 99999998717999999999999850873---------------------------------------368999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 99999708959999999999988789299999999999980998899999999998779995899986145301
Q 001509 509 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 582 (1065)
Q Consensus 509 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 582 (1065)
|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++.+.|+++.++..++.+...
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999878899999999999884845489999999999870379999999999988593529999999999998
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=264.74 Aligned_cols=225 Identities=12% Similarity=0.016 Sum_probs=95.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 99999997089599999999999887892999999999999809988999999999987799958999861453016653
Q 001509 507 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 586 (1065)
Q Consensus 507 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 586 (1065)
.+|.++...|++++|+..|.+++...|.+..++..++.++...|++++|+.++++++..+|.++.++..+|.++...|++
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999998689999999999999868897699999999998779999999999999986889879999999999975999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999943047987768998668899999875310170587655999999999998528754699858989998049
Q 001509 587 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 666 (1065)
Q Consensus 587 ~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g 666 (1065)
++|+..|++++...|. ....+..++.+ .. ......+|.++...|
T Consensus 228 ~~A~~~~~~~~~~~p~-~~~~~~~~~~~-----------------~~------------------~~~~~~~~~~~~~~g 271 (450)
T 2y4t_A 228 ELSLSEVRECLKLDQD-HKRCFAHYKQV-----------------KK------------------LNKLIESAEELIRDG 271 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHH-----------------HH------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHH-----------------HH------------------HHHHHHHHHHHHHCC
T ss_conf 9999999999875998-08999999999-----------------99------------------999999999998717
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHH
Q ss_conf 90889999999999824898886357999999999982899999999999998743799699999999999982019999
Q 001509 667 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 746 (1065)
Q Consensus 667 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 746 (1065)
++++|+..|++++...|.+.. ....++.++|.++...|++++|+..|++++.. .+.++.++..+|.++...|++++|
T Consensus 272 ~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 272 RYTDATSKYESVMKTEPSIAE-YTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp CHHHHHHHHHHHHHHCCSSHH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 999999999999850873368-99999999999999878899999999999884--845489999999999870379999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999999998399982047889998
Q 001509 747 KKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 747 ~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
...|++++.+.|+++.++.+++.+
T Consensus 349 ~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 349 IQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999988593529999999999
Done!