BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001510
(1064 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 63/299 (21%)
Query: 501 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 560
+L++CP +L W+ E+++ P +E L D DI+LTTY
Sbjct: 89 SLVICPLSVLKNWEEELSKFA-PHLRFAVFHEDRSKIKLED-----------YDIILTTY 136
Query: 561 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 620
VL D T L + W I +DEAQ +++ +
Sbjct: 137 AVLLRD-------------------------TRLKEVEWKYIVIDEAQNIKNPQTKIFKA 171
Query: 621 ALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEF 680
L +K+R +TGTPI+ K+DDL+ ++ FL + P + GD A E
Sbjct: 172 VKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEE 231
Query: 681 THKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQR 740
+ R +K + LP + E + +P + Y+++ ++
Sbjct: 232 LKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAE-----------VEN 280
Query: 741 LKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS 799
L +NI + + +L++LLKL+Q HP + G +S+++S
Sbjct: 281 LFNNI---------------DSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRS 324
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 116/299 (38%), Gaps = 63/299 (21%)
Query: 501 TLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTY 560
+L++CP +L W+ E+++ P +E L D DI+LTTY
Sbjct: 89 SLVICPLSVLKNWEEELSKFA-PHLRFAVFHEDRSKIKLED-----------YDIILTTY 136
Query: 561 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM 620
VL D T L + W I +DEAQ +++ +
Sbjct: 137 AVLLRD-------------------------TRLKEVEWKYIVIDEAQNIKNPQTKIFKA 171
Query: 621 ALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEF 680
L +K+R +TGTPI+ K+DDL+ + FL + P + GD A E
Sbjct: 172 VKELKSKYRIALTGTPIENKVDDLWSIXTFLNPGLLGSYSEFKSKFATPIKKGDNXAKEE 231
Query: 681 THKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQR 740
+ R +K + LP + E + +P + Y+++ ++
Sbjct: 232 LKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAXYKAE-----------VEN 280
Query: 741 LKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS 799
L +NI + + +L++LLKL+Q HP + G +S+++S
Sbjct: 281 LFNNI---------------DSVTGIKRKGXILSTLLKLKQIVDHPALLKGGEQSVRRS 324
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 53/240 (22%)
Query: 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653
L I W + +DEA +++ ++ E +R ITGTP+Q + +L L+ FL
Sbjct: 363 LGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMP 422
Query: 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEI---MCRSSKVHVSDELQLPPQEECV 710
F+I + E+ +EN D E+ H + I + R K V E LP + E +
Sbjct: 423 GRFTIDQ---EI---DFENQDEEQEEYIHDLHRRIQPFILRRLKKDV--EKSLPSKTERI 474
Query: 711 SWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAA 770
+ S ++ +Y+ NIL +N Y+ + A+
Sbjct: 475 LRVELSDVQTEYYK-------------------NILTKN----------YSALTAGAKGG 505
Query: 771 --KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMA 828
LLN + +L++A HP + + +E ++ G K+ E LR L+M+
Sbjct: 506 HFSLLNIMNELKKASNHPYLFDNA-----------EERVLQKFGDGKMTRENVLRGLIMS 554
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 4/29 (13%)
Query: 359 GGILADEMGLGKTVELLA----CIFAHRK 383
GILADEMGLGKTV+ +A IFA R+
Sbjct: 257 NGILADEMGLGKTVQTVAFISWLIFARRQ 285
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 418 CGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450
CGA ES W+ CD+C+ W H CV +P
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITP 41
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 358 FGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVT 399
+G I+ADEMGLGKT++ + I+ K + D ID + V+
Sbjct: 80 YGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVS 121
>pdb|2KGG|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger
pdb|2KGI|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger In
Complex With H3(1-9)k4me3
pdb|3GL6|A Chain A, Crystal Structure Of Jarid1a-Phd3 Complexed With H3(1-9)
K4me3 Peptide
Length = 52
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 417 ICGAVSESR--KYKGLWVQCDI-CDAWQHADCVGYSP 450
+C A + R K K WVQCD CD W H CVG SP
Sbjct: 2 VCAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSP 38
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
Query: 349 SPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQK-VNLR 407
+PDY + GG+L M V+LL R+ A D + + ++ ++L+
Sbjct: 35 TPDYVLGRIRGGVLEQGM-----VDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLK 89
Query: 408 RLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRK 467
RL + + G +R C +Q A+ + +G++ TFE +
Sbjct: 90 RLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149
Query: 468 KDMTNIVVRDGEH 480
D I DG H
Sbjct: 150 LDCDYIAGCDGFH 162
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 414 VECICGAVSESRKYKGLWVQCDICDAWQHADCVG 447
CICG + G + CD C WQH DC+G
Sbjct: 29 TRCICGFTHDD----GYMICCDKCSVWQHIDCMG 58
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 416 CICGAVSESRKYKGLWVQCDICDAWQHADCVGYS-PRGK 453
CIC +R + CD C+ W H DCVG S RG+
Sbjct: 19 CICRQPHNNR----FMICCDRCEEWFHGDCVGISEARGR 53
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 414 VECICGAVSESRKYKGLWVQCDICDAWQHADCVG 447
V C+C + ++ ++CDIC W H CVG
Sbjct: 38 VYCVCRQPYDVNRFM---IECDICKDWFHGSCVG 68
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 219 SWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSK 274
+WL E+L EA EL K DV ++HASFD+ R YE K ++
Sbjct: 31 AWLEVEILACEAW----------AELGDIPKEDVKKIREHASFDIDRIYEIEKETR 76
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVG 447
++ CIC + K+ ++ CD C W H CVG
Sbjct: 8 KLYCICKTPEDESKF---YIGCDRCQNWYHGRCVG 39
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human
Bptf In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVG 447
++ CIC + K+ ++ CD C W H CVG
Sbjct: 8 KLYCICKTPYDESKF---YIGCDRCQNWYHGRCVG 39
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVG 447
++ CIC + K+ ++ CD C W H CVG
Sbjct: 8 KLYCICKTPYDESKF---YIGCDRCQNWYHGRCVG 39
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVG 447
++ CIC + K+ ++ CD C W H CVG
Sbjct: 8 KLYCICKTPYDESKF---YIGCDRCQNWYHGRCVG 39
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 349 SPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQK-VNLR 407
+PDY + G+L M V+LL R+ A D + + ++ ++L+
Sbjct: 35 TPDYVLGRIRAGVLEQGM-----VDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLK 89
Query: 408 RLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRK 467
RL + + G +R C +Q A+ + +G++ TFE +
Sbjct: 90 RLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149
Query: 468 KDMTNIVVRDGEH 480
D I DG H
Sbjct: 150 LDCDYIAGCDGFH 162
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 349 SPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQK-VNLR 407
+PDY + G+L M V+LL R+ A D + + ++ ++L+
Sbjct: 35 TPDYVLGRIRAGVLEQGM-----VDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLK 89
Query: 408 RLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRK 467
RL + + G +R C +Q A+ + +G++ TFE +
Sbjct: 90 RLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149
Query: 468 KDMTNIVVRDGEH 480
D I DG H
Sbjct: 150 LDCDYIAGCDGFH 162
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 349 SPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQK-VNLR 407
+PDY + G+L M V+LL R+ A D + + ++ ++L+
Sbjct: 35 TPDYVLGRIRAGVLEQGM-----VDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLK 89
Query: 408 RLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRK 467
RL + + G +R C +Q A+ + +G++ TFE +
Sbjct: 90 RLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149
Query: 468 KDMTNIVVRDGEH 480
D I DG H
Sbjct: 150 LDCDYIAGCDGFH 162
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 349 SPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQK-VNLR 407
+PDY + G+L M V+LL R+ A D + + ++ ++L+
Sbjct: 35 TPDYVLGRIRAGVLEQGM-----VDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLK 89
Query: 408 RLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRK 467
RL + + G +R C +Q A+ + +G++ TFE +
Sbjct: 90 RLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149
Query: 468 KDMTNIVVRDGEH 480
D I DG H
Sbjct: 150 LDCDYIAGCDGFH 162
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 349 SPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQK-VNLR 407
+PDY + G+L M V+LL R+ A D + + ++ ++L+
Sbjct: 35 TPDYVLGRIRAGVLEQGM-----VDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLK 89
Query: 408 RLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRK 467
RL + + G +R C +Q A+ + +G++ TFE +
Sbjct: 90 RLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149
Query: 468 KDMTNIVVRDGEH 480
D I DG H
Sbjct: 150 LDCDYIAGCDGFH 162
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 349 SPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQK-VNLR 407
+PDY + G+L M V+LL R+ A D + + ++ ++L+
Sbjct: 35 TPDYVLGRIRAGVLEQGM-----VDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLK 89
Query: 408 RLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRK 467
RL + + G +R C +Q A+ + +G++ TFE +
Sbjct: 90 RLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149
Query: 468 KDMTNIVVRDGEH 480
D I DG H
Sbjct: 150 LDCDYIAGCDGFH 162
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 349 SPDYTSSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQK-VNLR 407
+PDY + G+L M V+LL R+ A D + + ++ ++L+
Sbjct: 35 TPDYVLGRIRAGVLEQGM-----VDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLK 89
Query: 408 RLKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRK 467
RL + + G +R C +Q A+ + +G++ TFE +
Sbjct: 90 RLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149
Query: 468 KDMTNIVVRDGEH 480
D I DG H
Sbjct: 150 LDCDYIAGCDGFH 162
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 414 VECICGAVSESRKYKGLWVQCDICDAWQHADCVG 447
V C+C + ++ ++CD+C W H CVG
Sbjct: 6 VYCLCRLPYDVTRFM---IECDMCQDWFHGSCVG 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,654,884
Number of Sequences: 62578
Number of extensions: 1104058
Number of successful extensions: 2526
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2505
Number of HSP's gapped (non-prelim): 35
length of query: 1064
length of database: 14,973,337
effective HSP length: 109
effective length of query: 955
effective length of database: 8,152,335
effective search space: 7785479925
effective search space used: 7785479925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)