Query 001510
Match_columns 1064
No_of_seqs 504 out of 3012
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385 Chromatin remodeling c 100.0 2.8E-80 6E-85 715.5 26.8 366 498-927 217-617 (971)
2 KOG0298 DEAD box-containing he 100.0 1.4E-77 3E-82 723.6 19.2 862 46-1036 4-888 (1394)
3 KOG0384 Chromodomain-helicase 100.0 6.7E-75 1.5E-79 697.7 19.1 476 498-1042 420-951 (1373)
4 KOG0387 Transcription-coupled 100.0 2.9E-74 6.4E-79 669.4 23.4 365 499-924 256-673 (923)
5 KOG0392 SNF2 family DNA-depend 100.0 1.6E-73 3.5E-78 681.5 21.4 373 498-925 1031-1470(1549)
6 KOG0389 SNF2 family DNA-depend 100.0 5.3E-70 1.2E-74 632.8 15.9 376 498-930 448-909 (941)
7 PLN03142 Probable chromatin-re 100.0 4.7E-68 1E-72 661.7 28.7 365 498-926 219-616 (1033)
8 KOG0391 SNF2 family DNA-depend 100.0 1.5E-67 3.3E-72 621.6 17.9 232 499-788 666-904 (1958)
9 KOG4439 RNA polymerase II tran 100.0 3.7E-66 8.1E-71 593.5 27.4 400 500-927 385-876 (901)
10 KOG1002 Nucleotide excision re 100.0 2E-65 4.4E-70 567.1 26.4 392 499-927 232-767 (791)
11 KOG0388 SNF2 family DNA-depend 100.0 5.9E-66 1.3E-70 587.9 15.8 357 498-923 617-1168(1185)
12 KOG0386 Chromatin remodeling c 100.0 8.1E-64 1.7E-68 592.7 16.4 365 498-923 444-852 (1157)
13 KOG0390 DNA repair protein, SN 100.0 4.6E-55 9.9E-60 523.6 27.8 369 498-925 298-723 (776)
14 KOG1001 Helicase-like transcri 100.0 1.7E-51 3.6E-56 496.2 26.7 370 497-924 188-665 (674)
15 COG0553 HepA Superfamily II DN 100.0 5E-52 1.1E-56 527.0 21.6 376 498-926 390-839 (866)
16 KOG1015 Transcription regulato 100.0 4.1E-49 8.9E-54 460.1 23.0 384 497-919 727-1287(1567)
17 PF00176 SNF2_N: SNF2 family N 100.0 9.7E-47 2.1E-51 420.0 18.4 241 499-789 59-299 (299)
18 KOG1016 Predicted DNA helicase 100.0 7.1E-41 1.5E-45 384.9 17.9 391 498-919 312-859 (1387)
19 KOG1000 Chromatin remodeling p 100.0 1.6E-39 3.4E-44 362.6 19.5 351 499-931 242-627 (689)
20 PRK04914 ATP-dependent helicas 100.0 7.7E-38 1.7E-42 390.3 29.1 342 498-923 199-619 (956)
21 KOG0383 Predicted helicase [Ge 100.0 1.6E-39 3.5E-44 387.2 11.4 313 498-876 345-690 (696)
22 TIGR00603 rad25 DNA repair hel 99.9 1.2E-22 2.5E-27 247.3 24.2 304 499-932 299-628 (732)
23 PRK13766 Hef nuclease; Provisi 99.8 2.4E-17 5.2E-22 208.3 22.9 366 499-916 59-486 (773)
24 COG1061 SSL2 DNA or RNA helica 99.4 4.1E-11 8.8E-16 142.2 24.8 297 500-919 82-404 (442)
25 PF04851 ResIII: Type III rest 99.4 5.9E-12 1.3E-16 129.8 13.3 123 500-637 52-183 (184)
26 smart00487 DEXDc DEAD-like hel 99.3 7.4E-12 1.6E-16 129.1 12.7 114 499-639 55-173 (201)
27 cd00046 DEXDc DEAD-like helica 99.3 7.9E-12 1.7E-16 121.4 11.9 110 499-636 31-144 (144)
28 PHA02558 uvsW UvsW helicase; P 99.2 1.4E-10 3.1E-15 139.9 16.4 100 499-638 159-261 (501)
29 KOG1123 RNA polymerase II tran 99.2 4E-11 8.7E-16 136.2 8.8 128 499-654 346-474 (776)
30 PRK11448 hsdR type I restricti 99.0 2.9E-09 6.3E-14 137.8 14.2 117 499-640 464-598 (1123)
31 COG1111 MPH1 ERCC4-like helica 98.9 1.1E-07 2.4E-12 110.0 21.5 128 499-655 59-190 (542)
32 cd00268 DEADc DEAD-box helicas 98.8 6.4E-08 1.4E-12 102.4 14.4 111 499-637 70-185 (203)
33 TIGR00348 hsdR type I site-spe 98.7 6.1E-08 1.3E-12 120.8 12.3 110 499-639 294-405 (667)
34 TIGR00643 recG ATP-dependent D 98.6 2.1E-07 4.6E-12 115.5 14.0 113 499-641 285-401 (630)
35 PF00270 DEAD: DEAD/DEAH box h 98.6 2.8E-07 6.1E-12 94.1 11.3 118 499-644 45-169 (169)
36 PF13872 AAA_34: P-loop contai 98.5 1.1E-06 2.5E-11 97.5 14.7 148 552-725 136-302 (303)
37 PRK10917 ATP-dependent DNA hel 98.4 1.1E-06 2.5E-11 109.9 12.4 111 500-641 312-424 (681)
38 COG4096 HsdR Type I site-speci 98.4 1.2E-06 2.7E-11 106.6 11.0 106 499-638 216-322 (875)
39 PRK01172 ski2-like helicase; P 98.3 5.4E-06 1.2E-10 104.1 15.8 114 499-645 66-186 (674)
40 PRK11192 ATP-dependent RNA hel 98.3 4.3E-06 9.2E-11 99.4 14.2 119 499-644 74-196 (434)
41 TIGR00614 recQ_fam ATP-depende 98.3 3.2E-06 6.9E-11 101.6 12.9 129 499-653 52-189 (470)
42 PRK02362 ski2-like helicase; P 98.3 6.8E-06 1.5E-10 104.1 16.2 116 499-647 68-190 (737)
43 PRK10689 transcription-repair 98.3 4.2E-06 9.2E-11 109.3 13.6 113 499-642 650-764 (1147)
44 PRK10590 ATP-dependent RNA hel 98.3 7.9E-06 1.7E-10 97.9 14.5 111 500-637 77-191 (456)
45 TIGR00580 mfd transcription-re 98.3 5.5E-06 1.2E-10 106.0 13.5 113 499-642 501-615 (926)
46 PRK11776 ATP-dependent RNA hel 98.2 1.2E-05 2.5E-10 96.5 13.8 111 500-637 74-189 (460)
47 PRK00254 ski2-like helicase; P 98.2 1.9E-05 4.1E-10 99.9 16.3 115 499-646 69-187 (720)
48 COG1204 Superfamily II helicas 98.2 1.4E-05 3E-10 100.5 14.1 122 499-656 77-205 (766)
49 PTZ00424 helicase 45; Provisio 98.2 2E-05 4.2E-10 92.5 14.0 111 499-637 97-212 (401)
50 TIGR01389 recQ ATP-dependent D 98.1 1.6E-05 3.5E-10 98.3 13.6 128 499-653 54-189 (591)
51 PRK11057 ATP-dependent DNA hel 98.1 1.9E-05 4.1E-10 97.9 13.7 128 499-653 66-201 (607)
52 PTZ00110 helicase; Provisional 98.1 2.3E-05 5.1E-10 95.9 13.9 110 500-636 205-318 (545)
53 PLN00206 DEAD-box ATP-dependen 98.1 2.7E-05 5.8E-10 94.8 14.2 112 499-637 197-311 (518)
54 KOG0354 DEAD-box like helicase 98.1 4E-05 8.7E-10 93.8 15.3 127 499-654 107-238 (746)
55 PRK04837 ATP-dependent RNA hel 98.1 4.1E-05 8.9E-10 90.9 14.4 111 499-637 84-201 (423)
56 PRK01297 ATP-dependent RNA hel 98.0 5.5E-05 1.2E-09 91.2 14.5 113 499-637 163-281 (475)
57 PRK04537 ATP-dependent RNA hel 98.0 7E-05 1.5E-09 92.2 14.2 112 499-637 85-203 (572)
58 PRK11634 ATP-dependent RNA hel 97.9 9.2E-05 2E-09 92.0 14.6 111 499-636 75-190 (629)
59 PRK13767 ATP-dependent helicas 97.8 0.00018 3.8E-09 92.8 15.3 120 499-645 85-224 (876)
60 PRK09401 reverse gyrase; Revie 97.8 0.00016 3.4E-09 95.2 14.9 88 499-611 124-214 (1176)
61 COG1205 Distinct helicase fami 97.8 0.0001 2.2E-09 94.0 12.8 114 499-635 116-241 (851)
62 COG4889 Predicted helicase [Ge 97.8 2.5E-05 5.4E-10 94.7 6.8 116 499-637 207-351 (1518)
63 PRK05580 primosome assembly pr 97.8 0.00014 3E-09 91.3 13.6 108 499-639 191-307 (679)
64 COG1200 RecG RecG-like helicas 97.8 7E-05 1.5E-09 90.6 10.1 112 500-642 313-427 (677)
65 TIGR03158 cas3_cyano CRISPR-as 97.8 0.00025 5.4E-09 82.5 14.3 125 500-638 41-193 (357)
66 TIGR03817 DECH_helic helicase/ 97.8 0.00023 4.9E-09 90.2 14.5 113 499-636 82-204 (742)
67 KOG0331 ATP-dependent RNA heli 97.6 0.0013 2.9E-08 78.5 17.2 107 500-635 167-280 (519)
68 TIGR00595 priA primosomal prot 97.5 0.0004 8.7E-09 84.2 10.6 107 499-638 26-141 (505)
69 TIGR01587 cas3_core CRISPR-ass 97.4 0.00048 1E-08 79.7 10.0 120 499-637 30-166 (358)
70 PF07652 Flavi_DEAD: Flaviviru 97.4 0.00091 2E-08 67.2 9.7 101 499-638 34-138 (148)
71 PLN03137 ATP-dependent DNA hel 97.4 0.0011 2.3E-08 85.4 12.7 131 499-652 501-642 (1195)
72 PRK15483 type III restriction- 97.2 0.0045 9.8E-08 78.9 15.2 132 499-638 90-240 (986)
73 TIGR03714 secA2 accessory Sec 97.2 0.0024 5.2E-08 79.9 12.3 118 500-648 113-232 (762)
74 KOG0952 DNA/RNA helicase MER3/ 97.1 0.0027 5.8E-08 79.6 11.1 136 500-667 166-311 (1230)
75 TIGR01054 rgy reverse gyrase. 97.0 0.0026 5.7E-08 84.0 10.4 86 499-612 122-213 (1171)
76 COG1197 Mfd Transcription-repa 96.9 0.0048 1E-07 79.1 11.7 113 499-642 644-758 (1139)
77 TIGR02621 cas3_GSU0051 CRISPR- 96.9 0.0088 1.9E-07 75.7 13.7 38 599-637 172-216 (844)
78 KOG0298 DEAD box-containing he 96.9 0.00039 8.4E-09 88.2 1.7 107 815-921 1214-1338(1394)
79 KOG0350 DEAD-box ATP-dependent 96.8 0.0029 6.3E-08 73.9 8.2 96 498-614 215-311 (620)
80 COG1201 Lhr Lhr-like helicases 96.6 0.0094 2E-07 75.1 11.1 125 500-654 75-206 (814)
81 PRK14701 reverse gyrase; Provi 96.1 0.017 3.8E-07 78.3 10.1 88 499-611 123-213 (1638)
82 PRK09200 preprotein translocas 95.9 0.039 8.4E-07 69.9 11.0 102 499-636 120-226 (790)
83 PRK09751 putative ATP-dependen 95.8 0.046 9.9E-07 73.4 11.6 119 499-646 38-177 (1490)
84 PHA02653 RNA helicase NPH-II; 95.7 0.092 2E-06 65.9 13.2 104 499-637 223-332 (675)
85 PF13086 AAA_11: AAA domain; P 95.5 0.27 5.8E-06 52.4 14.2 36 598-638 192-228 (236)
86 TIGR00963 secA preprotein tran 95.4 0.051 1.1E-06 68.1 9.3 98 802-900 386-510 (745)
87 COG0610 Type I site-specific r 94.9 0.082 1.8E-06 69.0 9.7 114 500-643 305-420 (962)
88 PRK09694 helicase Cas3; Provis 94.8 0.19 4E-06 64.9 12.4 76 553-645 411-489 (878)
89 TIGR01407 dinG_rel DnaQ family 94.8 0.2 4.4E-06 65.0 12.8 41 550-612 414-454 (850)
90 PF11496 HDA2-3: Class II hist 94.8 0.049 1.1E-06 61.8 6.3 125 707-844 4-139 (297)
91 KOG1513 Nuclear helicase MOP-3 94.4 0.16 3.4E-06 62.5 9.4 153 551-730 367-541 (1300)
92 PRK12898 secA preprotein trans 94.4 0.4 8.7E-06 59.8 13.2 126 499-646 145-279 (656)
93 KOG0330 ATP-dependent RNA heli 94.1 0.22 4.8E-06 57.2 9.4 118 500-644 131-252 (476)
94 PRK12899 secA preprotein trans 93.9 0.33 7.1E-06 62.1 11.4 112 500-648 137-252 (970)
95 KOG0338 ATP-dependent RNA heli 93.8 0.48 1E-05 56.2 11.5 121 497-647 251-378 (691)
96 TIGR01970 DEAH_box_HrpB ATP-de 93.6 0.25 5.5E-06 63.4 10.0 111 499-644 46-164 (819)
97 COG0513 SrmB Superfamily II DN 93.6 0.41 8.8E-06 58.6 11.4 109 501-637 102-216 (513)
98 TIGR03117 cas_csf4 CRISPR-asso 93.0 0.52 1.1E-05 58.8 11.0 43 550-614 180-222 (636)
99 PRK11664 ATP-dependent RNA hel 92.9 0.43 9.3E-06 61.4 10.4 112 499-645 49-168 (812)
100 COG1203 CRISPR-associated heli 92.7 0.75 1.6E-05 58.8 12.1 131 499-638 247-382 (733)
101 COG1110 Reverse gyrase [DNA re 92.7 0.25 5.5E-06 62.8 7.5 87 499-610 126-215 (1187)
102 COG4098 comFA Superfamily II D 92.1 2 4.3E-05 49.1 12.9 41 598-638 202-245 (441)
103 TIGR00604 rad3 DNA repair heli 92.0 0.25 5.5E-06 62.8 6.7 64 515-613 172-235 (705)
104 PRK13104 secA preprotein trans 91.8 0.47 1E-05 60.6 8.6 102 499-636 124-229 (896)
105 KOG0947 Cytoplasmic exosomal R 91.4 0.56 1.2E-05 59.3 8.3 87 511-635 354-443 (1248)
106 COG0514 RecQ Superfamily II DN 91.1 0.41 8.8E-06 58.8 6.8 130 498-654 57-194 (590)
107 KOG0335 ATP-dependent RNA heli 90.8 0.92 2E-05 54.1 9.1 86 499-611 153-239 (482)
108 KOG0951 RNA helicase BRR2, DEA 90.4 1.2 2.6E-05 57.9 10.1 105 500-635 366-483 (1674)
109 PF00628 PHD: PHD-finger; Int 90.3 0.097 2.1E-06 43.1 0.4 30 417-450 4-33 (51)
110 COG4581 Superfamily II RNA hel 89.9 1.7 3.7E-05 56.5 11.1 76 550-649 203-281 (1041)
111 KOG1802 RNA helicase nonsense 89.8 0.77 1.7E-05 56.0 7.3 36 498-537 454-490 (935)
112 PF02562 PhoH: PhoH-like prote 89.6 0.34 7.3E-06 52.1 3.9 44 597-642 118-161 (205)
113 PRK10536 hypothetical protein; 88.9 1.8 3.8E-05 48.2 9.0 41 599-641 177-217 (262)
114 PRK13103 secA preprotein trans 88.8 1.1 2.5E-05 57.3 8.3 101 499-635 124-228 (913)
115 PRK11131 ATP-dependent RNA hel 88.8 2.6 5.7E-05 56.4 11.9 61 552-636 163-228 (1294)
116 KOG0343 RNA Helicase [RNA proc 88.7 1.1 2.3E-05 53.8 7.4 119 500-646 143-265 (758)
117 COG3587 Restriction endonuclea 88.6 1.2 2.6E-05 56.0 8.1 125 499-635 105-241 (985)
118 KOG1132 Helicase of the DEAD s 87.6 2 4.4E-05 54.2 9.1 23 359-381 42-64 (945)
119 PRK13107 preprotein translocas 87.5 2.5 5.5E-05 54.2 10.2 112 499-648 124-239 (908)
120 PRK04296 thymidine kinase; Pro 87.2 3.7 7.9E-05 43.5 9.9 36 598-635 78-114 (190)
121 KOG4284 DEAD box protein [Tran 86.4 0.95 2.1E-05 55.1 5.3 117 500-645 95-217 (980)
122 PRK12904 preprotein translocas 85.8 2.2 4.8E-05 54.6 8.4 111 500-648 124-238 (830)
123 PF09848 DUF2075: Uncharacteri 85.3 3.7 8E-05 47.8 9.5 18 595-612 80-97 (352)
124 PRK14873 primosome assembly pr 84.4 3.4 7.4E-05 52.1 9.2 107 499-637 189-304 (665)
125 PF06733 DEAD_2: DEAD_2; Inte 83.8 0.84 1.8E-05 47.5 3.0 44 547-612 114-159 (174)
126 PF13604 AAA_30: AAA domain; P 82.2 16 0.00035 38.9 12.0 39 598-638 93-132 (196)
127 TIGR01967 DEAH_box_HrpA ATP-de 80.9 5.8 0.00013 53.4 9.7 69 552-643 156-228 (1283)
128 PRK12326 preprotein translocas 80.9 5.9 0.00013 50.0 9.1 102 499-636 120-225 (764)
129 TIGR00376 DNA helicase, putati 80.8 14 0.00031 46.6 12.7 41 593-638 356-396 (637)
130 smart00249 PHD PHD zinc finger 80.8 1.1 2.4E-05 35.2 2.0 23 428-450 11-33 (47)
131 KOG1803 DNA helicase [Replicat 79.7 7.3 0.00016 47.7 9.0 40 594-638 354-393 (649)
132 KOG0336 ATP-dependent RNA heli 79.5 6.5 0.00014 45.9 8.1 107 499-634 295-405 (629)
133 smart00489 DEXDc3 DEAD-like he 79.3 1.1 2.4E-05 50.7 2.2 44 548-612 207-250 (289)
134 smart00488 DEXDc2 DEAD-like he 79.3 1.1 2.4E-05 50.7 2.2 44 548-612 207-250 (289)
135 KOG1131 RNA polymerase II tran 79.1 3 6.4E-05 49.9 5.4 28 359-386 37-64 (755)
136 KOG0342 ATP-dependent RNA heli 78.1 6.9 0.00015 46.7 8.1 110 500-635 156-270 (543)
137 KOG0339 ATP-dependent RNA heli 77.8 7.7 0.00017 46.5 8.3 110 497-635 294-410 (731)
138 COG1202 Superfamily II helicas 76.6 7.2 0.00016 47.4 7.7 126 498-649 261-393 (830)
139 KOG0345 ATP-dependent RNA heli 74.9 13 0.00029 44.3 9.1 110 500-635 81-197 (567)
140 KOG1844 PHD Zn-finger proteins 72.6 1.7 3.8E-05 53.0 1.5 36 412-450 85-120 (508)
141 COG0556 UvrB Helicase subunit 70.7 6.6 0.00014 47.5 5.5 32 499-530 58-90 (663)
142 TIGR01448 recD_rel helicase, p 70.3 38 0.00082 43.5 12.6 41 597-639 415-455 (720)
143 KOG1973 Chromatin remodeling p 70.0 2 4.4E-05 48.3 1.2 49 411-488 217-268 (274)
144 PRK12906 secA preprotein trans 69.7 11 0.00023 48.4 7.4 87 499-610 122-212 (796)
145 PF07517 SecA_DEAD: SecA DEAD- 68.8 49 0.0011 37.3 11.6 87 499-610 119-209 (266)
146 PF13401 AAA_22: AAA domain; P 68.3 4.4 9.6E-05 39.3 3.0 35 600-636 89-125 (131)
147 KOG0348 ATP-dependent RNA heli 68.2 16 0.00035 44.2 7.9 94 501-623 214-317 (708)
148 PF02399 Herpes_ori_bp: Origin 68.2 49 0.0011 42.5 12.6 100 499-635 79-189 (824)
149 KOG0340 ATP-dependent RNA heli 67.8 23 0.00049 41.0 8.7 121 500-644 77-201 (442)
150 PRK11747 dinG ATP-dependent DN 66.4 4.3 9.3E-05 51.7 3.1 48 548-614 215-262 (697)
151 PRK14960 DNA polymerase III su 66.3 29 0.00063 43.8 10.0 60 598-657 118-178 (702)
152 TIGR02881 spore_V_K stage V sp 66.3 16 0.00034 40.7 7.2 20 359-378 44-63 (261)
153 cd00079 HELICc Helicase superf 64.1 4.5 9.7E-05 38.8 2.1 81 822-902 28-130 (131)
154 PF07227 DUF1423: Protein of u 64.0 5.1 0.00011 47.4 2.9 79 413-521 129-207 (446)
155 COG1198 PriA Primosomal protei 63.8 53 0.0012 42.0 11.8 106 499-637 246-360 (730)
156 PRK12902 secA preprotein trans 60.6 28 0.00062 45.0 8.6 87 499-610 127-217 (939)
157 KOG0926 DEAH-box RNA helicase 60.1 20 0.00043 45.4 6.9 35 552-609 349-383 (1172)
158 KOG0948 Nuclear exosomal RNA h 58.3 21 0.00046 44.9 6.7 43 549-613 208-250 (1041)
159 KOG0333 U5 snRNP-like RNA heli 58.1 23 0.00049 42.9 6.7 86 500-612 324-410 (673)
160 PRK05707 DNA polymerase III su 54.2 98 0.0021 35.9 11.1 21 361-381 26-46 (328)
161 KOG0347 RNA helicase [RNA proc 52.7 38 0.00082 41.4 7.4 64 500-568 265-329 (731)
162 PRK14964 DNA polymerase III su 52.4 70 0.0015 39.2 9.9 42 598-639 116-158 (491)
163 KOG0353 ATP-dependent DNA heli 50.3 24 0.00052 40.7 5.1 131 498-649 134-273 (695)
164 CHL00122 secA preprotein trans 49.7 42 0.00092 43.4 7.7 87 499-610 118-208 (870)
165 PRK08074 bifunctional ATP-depe 49.4 12 0.00026 49.4 3.0 45 548-614 427-471 (928)
166 PRK07246 bifunctional ATP-depe 48.4 12 0.00027 48.6 2.9 43 548-613 409-451 (820)
167 COG5034 TNG2 Chromatin remodel 47.9 8.4 0.00018 42.3 1.1 49 410-487 218-269 (271)
168 KOG4323 Polycomb-like PHD Zn-f 46.8 7.1 0.00015 46.6 0.3 53 415-487 171-223 (464)
169 KOG0949 Predicted helicase, DE 46.2 41 0.00088 43.7 6.6 141 476-649 537-682 (1330)
170 KOG1133 Helicase of the DEAD s 44.9 12 0.00027 46.4 1.9 56 525-613 308-363 (821)
171 TIGR02880 cbbX_cfxQ probable R 44.4 36 0.00078 38.5 5.5 21 359-379 60-80 (284)
172 KOG0351 ATP-dependent DNA heli 43.8 36 0.00078 44.8 5.9 136 496-657 302-451 (941)
173 PF05876 Terminase_GpA: Phage 39.4 1.1E+02 0.0024 38.1 9.1 56 592-647 128-190 (557)
174 COG1198 PriA Primosomal protei 39.2 51 0.0011 42.2 6.1 73 477-564 473-546 (730)
175 PF13173 AAA_14: AAA domain 39.0 33 0.00071 33.6 3.6 40 598-638 61-100 (128)
176 KOG0334 RNA helicase [RNA proc 39.0 54 0.0012 42.8 6.3 58 500-564 440-500 (997)
177 PRK12900 secA preprotein trans 38.3 1E+02 0.0022 40.7 8.6 98 511-645 196-293 (1025)
178 PRK14965 DNA polymerase III su 38.1 1E+02 0.0022 38.6 8.5 20 361-380 42-61 (576)
179 CHL00181 cbbX CbbX; Provisiona 38.0 56 0.0012 37.1 5.7 19 361-379 63-81 (287)
180 PF13177 DNA_pol3_delta2: DNA 37.8 3E+02 0.0066 28.2 10.7 22 361-382 23-44 (162)
181 PRK12901 secA preprotein trans 37.2 1.2E+02 0.0026 40.3 8.9 101 511-647 227-327 (1112)
182 PRK14963 DNA polymerase III su 36.3 3E+02 0.0065 34.0 12.0 20 361-380 40-59 (504)
183 PRK06647 DNA polymerase III su 36.2 1.5E+02 0.0032 37.1 9.5 20 361-380 42-61 (563)
184 PRK14971 DNA polymerase III su 36.1 2.5E+02 0.0055 35.5 11.6 61 598-658 121-182 (614)
185 KOG0326 ATP-dependent RNA heli 36.0 2.2E+02 0.0047 33.0 9.6 109 497-635 152-267 (459)
186 PRK07940 DNA polymerase III su 35.9 67 0.0015 38.2 6.2 22 359-380 38-59 (394)
187 PHA00673 acetyltransferase dom 35.2 63 0.0014 33.4 5.0 45 598-642 87-134 (154)
188 PRK08769 DNA polymerase III su 33.7 3.4E+02 0.0073 31.4 11.2 52 598-651 113-167 (319)
189 COG1702 PhoH Phosphate starvat 32.8 22 0.00048 41.1 1.5 40 599-641 244-284 (348)
190 KOG1805 DNA replication helica 32.4 4E+02 0.0087 35.2 12.1 41 593-638 791-831 (1100)
191 PRK14948 DNA polymerase III su 32.3 2E+02 0.0044 36.3 9.9 21 360-380 41-61 (620)
192 COG1875 NYN ribonuclease and A 31.7 36 0.00078 39.8 2.9 39 599-639 352-390 (436)
193 PLN03025 replication factor C 31.6 58 0.0013 37.3 4.6 58 598-655 99-157 (319)
194 PRK07003 DNA polymerase III su 29.7 56 0.0012 42.0 4.3 61 597-657 118-179 (830)
195 KOG0328 Predicted ATP-dependen 29.6 2.7E+02 0.0059 31.7 8.9 125 499-655 96-225 (400)
196 KOG0344 ATP-dependent RNA heli 29.3 95 0.0021 38.3 5.9 90 500-613 211-303 (593)
197 PRK12903 secA preprotein trans 28.4 1.7E+02 0.0037 38.2 8.2 86 500-610 121-210 (925)
198 KOG3259 Peptidyl-prolyl cis-tr 28.4 41 0.00089 34.2 2.3 58 322-382 8-65 (163)
199 PF12340 DUF3638: Protein of u 27.5 1.2E+02 0.0025 33.5 5.8 23 500-522 72-94 (229)
200 PRK14954 DNA polymerase III su 26.7 3.4E+02 0.0074 34.4 10.4 20 361-380 42-61 (620)
201 KOG0951 RNA helicase BRR2, DEA 26.3 2.8E+02 0.0061 37.6 9.5 103 499-639 1187-1301(1674)
202 KOG0337 ATP-dependent RNA heli 26.2 91 0.002 37.1 4.8 105 499-635 91-204 (529)
203 TIGR00631 uvrb excinuclease AB 26.2 2.5E+02 0.0054 35.9 9.2 31 499-531 55-86 (655)
204 PF13245 AAA_19: Part of AAA d 25.6 1.1E+02 0.0023 27.6 4.3 19 363-381 16-34 (76)
205 TIGR01447 recD exodeoxyribonuc 25.6 65 0.0014 40.4 3.9 40 597-638 258-297 (586)
206 COG1643 HrpA HrpA-like helicas 25.0 2.7E+02 0.0059 36.5 9.3 23 359-381 67-89 (845)
207 PF07496 zf-CW: CW-type Zinc F 24.9 25 0.00054 29.2 0.1 15 430-444 2-16 (50)
208 TIGR02768 TraA_Ti Ti-type conj 24.8 5E+02 0.011 33.7 11.7 39 598-638 439-478 (744)
209 PRK07471 DNA polymerase III su 23.7 4.1E+02 0.009 31.3 9.9 21 361-381 45-65 (365)
210 KOG0920 ATP-dependent RNA heli 23.6 5.3E+02 0.011 34.2 11.3 22 360-381 191-212 (924)
211 TIGR00596 rad1 DNA repair prot 23.4 3.6E+02 0.0079 35.3 10.0 65 551-638 6-74 (814)
212 PF14562 Endonuc_BglI: Restric 22.7 66 0.0014 35.0 2.7 73 972-1044 20-98 (292)
213 TIGR00595 priA primosomal prot 22.4 1.8E+02 0.0039 35.8 6.8 50 510-561 271-321 (505)
214 COG1199 DinG Rad3-related DNA 22.4 69 0.0015 40.5 3.3 44 551-614 193-236 (654)
215 COG4646 DNA methylase [Transcr 21.7 47 0.001 39.7 1.5 32 625-656 472-503 (637)
216 cd01121 Sms Sms (bacterial rad 21.2 6E+02 0.013 30.1 10.5 20 361-380 86-105 (372)
217 PRK14974 cell division protein 20.2 6.9E+02 0.015 29.2 10.6 44 598-641 222-269 (336)
No 1
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.8e-80 Score=715.50 Aligned_cols=366 Identities=22% Similarity=0.335 Sum_probs=308.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.||+||+||.|++.||.+||.+|+| ++++++|+|.+..+....+ ....-..+||+||||++..++.
T Consensus 217 ~GPfLVi~P~StL~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r--~~~~~~~fdV~iTsYEi~i~dk---------- 282 (971)
T KOG0385|consen 217 PGPFLVIAPKSTLDNWMNEFKRFTP--SLNVVVYHGDKEERAALRR--DIMLPGRFDVCITSYEIAIKDK---------- 282 (971)
T ss_pred CCCeEEEeeHhhHHHHHHHHHHhCC--CcceEEEeCCHHHHHHHHH--HhhccCCCceEeehHHHHHhhH----------
Confidence 4899999999999999999999998 9999999999876532211 2222348999999999999874
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1064)
+.|.++.|.++|+||||+|||.+|.+++.++.+.+.+|++|||||+||+|.|||+||+||.|+.|+
T Consensus 283 --------------~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~ 348 (971)
T KOG0385|consen 283 --------------SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFN 348 (971)
T ss_pred --------------HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhcc
Confidence 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcCCCCCCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 001510 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1064)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~ 737 (1064)
+...|..+|......++.+.+.+|+.+++||+|||.|.+|... ||||++.+++|.||..|+++|..++.+-....
T Consensus 349 ~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~--- 423 (971)
T KOG0385|consen 349 SAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDAL--- 423 (971)
T ss_pred CHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhh---
Confidence 9999999998877778888999999999999999999999655 99999999999999999999999865422111
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHH----------HH
Q 001510 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDE----------IL 807 (1064)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~ee----------lL 807 (1064)
+ +. .......+++.+|+||+|||||+|+.+.. ++.+.+.++ +|
T Consensus 424 --------n-----------~~-----~~~~k~kL~NI~mQLRKccnHPYLF~g~e---Pg~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 424 --------N-----------GE-----GKGEKTKLQNIMMQLRKCCNHPYLFDGAE---PGPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred --------c-----------cc-----ccchhhHHHHHHHHHHHhcCCccccCCCC---CCCCCCcchHHHhcCcceehH
Confidence 0 00 01135789999999999999999988732 224444443 67
Q ss_pred HHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHHHHHH-----HHHHHHhhccCCCCcC---e------eE
Q 001510 808 MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLLN---I------HL 873 (1064)
Q Consensus 808 ~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~~~l~-----~~~e~~~~f~~D~~~~---l------h~ 873 (1064)
+.|+.+++.+| |+||||||++.|||||+++......-|-++.+ .+.+.++.|+.++.-. + ++
T Consensus 477 DkLL~~Lk~~G----hRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 477 DKLLPKLKEQG----HRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred HHHHHHHHhCC----CeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 77777777666 99999999999999999987766555544433 5667788898877322 2 56
Q ss_pred EeccC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhhhhhcccc
Q 001510 874 HHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1064)
Q Consensus 874 ~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~~~~~ 927 (1064)
+.||+ ||||++|.||+| ||||||+|+|.||||+|++||||.|+..+-.|.-+++
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~ 617 (971)
T KOG0385|consen 553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDK 617 (971)
T ss_pred ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhh
Confidence 77776 899999999999 9999999999999999999999999999988877764
No 2
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-77 Score=723.60 Aligned_cols=862 Identities=26% Similarity=0.312 Sum_probs=652.1
Q ss_pred CCCCeEEEEcCcccccc--CCCchhhhhhccccccccc---cceeeecccccccceEEEEEEccccccccceeccCCCcc
Q 001510 46 VDHPFFVEVNRTCWLLD--EHLDISEIVLTDLKLREEF---SGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPLL 120 (1064)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1064)
++.|+.++.+.+...+. +..+..++|++.++..+.+ +++...-+..++..+ +|+.|++.+||.+++.||||++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vit~~s~l~r~~~~~t~t~~~~~~~~~~~--~~~~~~~~n~v~~~~~~~~~~~ 81 (1394)
T KOG0298|consen 4 KYPLDESMSEDEEYIETWKDLPKNRVIVITKRSPLVRGVLLRTITSHFQIPAAQYG--TLLAYVSDNVVRFYAETYRRNN 81 (1394)
T ss_pred ccchhhhhhhhHHHHHHHHhcCCCceEEEecCChhhhcceeeEEeecccchhhhcc--eeEeecchhHHHHHHhhhcccC
Confidence 44555555554433322 4788999999999988776 455555555555545 9999999999999999999999
Q ss_pred cCCccchhhHHhhhccccccceEEeecccCCCCCcchhhHhhhhcceEEeeccCCCCcccccccceeeEEeccchhhhhh
Q 001510 121 SSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDACE 200 (1064)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~~l~~~~~~~~ 200 (1064)
++-++++++++...... +++...++-+|+++.++.++.++..++-+++++-..+ ++......+++.-+...++.|.
T Consensus 82 s~~d~~~~~~~~k~~~~-~~~es~~~~~~~~~~~~~s~~~~~~~~~~l~~ic~~~---Nq~r~t~~l~~~ki~~s~~s~~ 157 (1394)
T KOG0298|consen 82 SPMDGTVLCEDNKEVPP-ESPESPTLFSYGKKREVFSDNAVEHKGIELILICIPK---NQNRRTRYLKVRKIRQSSGSCI 157 (1394)
T ss_pred CccccceeeccccccCC-CCCCcchHHHhcccccccchHHHHhhcchhhhhcccc---cccccchhhhHHHHhccchhhh
Confidence 99999999998888777 8899999999999999999999999999888753222 3445567888888999999999
Q ss_pred hhhhhhhHHHHHHHHHHhhhcCCCcCCcccccccccccchhhhhcccccccccccccCCCCCHHHHHHHhccCCCCCCcc
Q 001510 201 SLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLE 280 (1064)
Q Consensus 201 ~l~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~y~~i~~~~~~~~~~ 280 (1064)
..+.++.+-|++.|...|.|.++..+.....|+...+... .........+-........+|-..++..+.+........
T Consensus 158 ~~lt~t~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~d-~e~~~~l~~~~k~t~~n~~~d~~~~~~~i~~l~~s~~~~ 236 (1394)
T KOG0298|consen 158 LVLTNTQTHVRKRLIREMIVGLQKLTLFFKDFPGSFEFKD-AEQEKVLKFELKTTSTNKLFDALYEKHRITVLVESERSL 236 (1394)
T ss_pred HhhhhhhhhHHHHHHHHHHhcccccccccccCCceeeech-HHHHHHHhhhhhhhhhhhhhhhHHhhhhccccchhccCc
Confidence 9999999999999999999999999988877775432111 000111111111222345566666666665544333333
Q ss_pred CCCCCccCCChHHHHHHHHHHHHcccCCCCCC------chhhcccccCCCCCCccccCccccceeccCCCcccCCCCCCC
Q 001510 281 EDLPDLLPLLRPYQRRAAYWMVQREKGDSASS------SERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTS 354 (1064)
Q Consensus 281 ~~~p~L~~~LrpyQ~~aV~WMl~RE~~~~~~~------~~~~~~~~~~Plw~~~~~~~~~~~~yyn~~tG~i~~~~~~~~ 354 (1064)
..+....+++|+||.+++.||.+|+..-.... ......+...++-.++.+.+-+..++ ..
T Consensus 237 D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~--------------~e 302 (1394)
T KOG0298|consen 237 DLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELP--------------KE 302 (1394)
T ss_pred hHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccch--------------hc
Confidence 33455789999999999999999998543211 01111111111111111111111111 12
Q ss_pred CCcccceeecCCCcchHHHHHHHHHHhcCCCCCCccccccccccchhhhhhHHhhhhhhhhhhccccccccccccccccc
Q 001510 355 SYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQC 434 (1064)
Q Consensus 355 ~~~rGGILADEMGLGKTvq~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~c~~~~~~~~~~g~~v~c 434 (1064)
+...||.+|||||||||++-+|++..|+.+... ..........|.|+...+...+.+.|++|
T Consensus 303 ~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~~ 364 (1394)
T KOG0298|consen 303 SLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKDE 364 (1394)
T ss_pred cCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhhH
Confidence 345589999999999999999999999877322 23344456778888888888888888888
Q ss_pred cccccccccc-------ccCcCCCCCcccchhhhhhhccccccccccccCCccccccchhhhhcCCCCCCCCcEEEEeCC
Q 001510 435 DICDAWQHAD-------CVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPA 507 (1064)
Q Consensus 435 ~~c~~w~h~~-------cv~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~c~~c~~~~~~~~~~~~~~~tLIV~P~ 507 (1064)
..|..|+++. |.|..-.. . -..........+.|..|.+.......+..+|+||||||.
T Consensus 365 ~~~~~~~~~g~~~~~ade~~~qk~~--------------~-~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~ 429 (1394)
T KOG0298|consen 365 VLCSGDKKHGKRVQCADEMGWQKTS--------------E-KLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN 429 (1394)
T ss_pred HhhcCCccCCcceeehhhhhccchH--------------H-HHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH
Confidence 8888887764 22211100 0 011223345566677778887888888999999999999
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccC
Q 001510 508 PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRY 587 (1064)
Q Consensus 508 SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry 587 (1064)
+++.||-.||.+|+++. ++|+.|.|.++.... .+..+.+||||+|||++|+.++.++ .+.++.|.+|++++|
T Consensus 430 aIl~QW~~EI~kH~~~~-lKv~~Y~Girk~~~~-----~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr~ 501 (1394)
T KOG0298|consen 430 AILMQWFEEIHKHISSL-LKVLLYFGIRKTFWL-----SPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSRY 501 (1394)
T ss_pred HHHHHHHHHHHHhcccc-ceEEEEechhhhccc-----CchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccCC
Confidence 99999999999999853 799999999876532 5588999999999999999999875 567899999999999
Q ss_pred CCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCccchhhhhhc
Q 001510 588 PVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIR 667 (1064)
Q Consensus 588 ~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~~~~F~~~~~ 667 (1064)
+.+++||..+.|||||||||||+.+..|.+++|+.+|++.+||++||||||+ ++|||+||.||+..||+...+|.+.+.
T Consensus 502 ~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~ 580 (1394)
T KOG0298|consen 502 MRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVD 580 (1394)
T ss_pred CCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999988
Q ss_pred CCCCCCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001510 668 DPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILK 747 (1064)
Q Consensus 668 ~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~~~~~~~~~~~ 747 (1064)
.++... ...+.+..++...++|+.|.+|..++.+||+.+.++++.+++.|..+|+..+..|..++...+..++.+.+.
T Consensus 581 ~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~ 658 (1394)
T KOG0298|consen 581 KAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLD 658 (1394)
T ss_pred HHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccc
Confidence 877654 455678899999999999999999999999999999999999999999999999999999888887765542
Q ss_pred ccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHH
Q 001510 748 RNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVM 827 (1064)
Q Consensus 748 r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e~~e~lrkvli 827 (1064)
. ....+.+++.....++.++++|||+||||+++.+++...... +++|+|..|+++...++.+..|....
T Consensus 659 ~---------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~~ 727 (1394)
T KOG0298|consen 659 N---------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLAS 727 (1394)
T ss_pred c---------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 1 112234556778899999999999999999999888776554 89999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHhh-ccCCCCcCeeEEeccCccCcchhhhhhhhhccCCCCceEE
Q 001510 828 ALNGLAGIALIEKNLSQ----AVSLYKEAMAVVEEHSED-FRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGCS 902 (1064)
Q Consensus 828 fsq~la~L~iIe~~l~~----a~~~y~~~l~~~~e~~~~-f~~D~~~~lh~~~Nl~~~np~~~~Qa~~~~riGq~~~v~v 902 (1064)
.++++|.+..+.+++.. +...|+..+....+...+ .-.|.-.+.|..+++..-...
T Consensus 728 ~~~~~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~~~~~~------------------- 788 (1394)
T KOG0298|consen 728 SKNGLAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLLQASSL------------------- 788 (1394)
T ss_pred HhhhhHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhhccccc-------------------
Confidence 99999999999999885 455566655544333322 113333444555554411111
Q ss_pred EEcccCCccccchhhHhhhhhcccccCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhh
Q 001510 903 EKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYL 982 (1064)
Q Consensus 903 ~rl~~~~t~ee~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~ 982 (1064)
-.-+......+++...++.. .+ ++..+.|.+ -.+.--|..+++||+
T Consensus 789 -------~~sd~~~~~~~~~~~~~~~s-~~--------------~~~~~~d~~------------~~~~~~~q~~~~kl~ 834 (1394)
T KOG0298|consen 789 -------APSDRKLTELEHKKYQAQMS-RL--------------EWKYLEDET------------RVLYSLLQDLNEKLE 834 (1394)
T ss_pred -------cchhhhHHHHHHHhhhhhhc-cc--------------cchhhchhh------------HHHHHHHHHHHHHHH
Confidence 00011122223322222211 11 111112211 136668899999999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHhhhccccCChhHHHHHHhhhcCccchHHHH
Q 001510 983 SGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELI 1036 (1064)
Q Consensus 983 ~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~ww~~~l~~~~~~~~~~~~l~ 1036 (1064)
+++..+.+.++.+|...+.++.+.++.+......||++....++.+.++.++|-
T Consensus 835 s~~~~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLr 888 (1394)
T KOG0298|consen 835 SVSILKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELR 888 (1394)
T ss_pred HHHhhhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998875
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=6.7e-75 Score=697.66 Aligned_cols=476 Identities=19% Similarity=0.261 Sum_probs=359.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccc---chh-hhhcCCCEEEEehHHHhhhcccCCCC
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSI---MDI-SELVGADIVLTTYDVLKEDLSHDSDR 573 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~---~~~-~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1064)
.||+|||+|.|++.+|++||..|+ .+++++|+|....+...+.. ... ...-+++++||||+++.+|.
T Consensus 420 ~gpflvvvplst~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk------ 490 (1373)
T KOG0384|consen 420 HGPFLVVVPLSTITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK------ 490 (1373)
T ss_pred cCCeEEEeehhhhHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH------
Confidence 589999999999999999999999 79999999986543211100 000 22236999999999999885
Q ss_pred cccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCC
Q 001510 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1064)
Q Consensus 574 ~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1064)
..|..++|..+++||||++||..++++..+..++..||+++||||+||++.|||+|++||.|
T Consensus 491 ------------------~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 491 ------------------AELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ------------------hhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhcCCCCCCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 001510 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGY 733 (1064)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~ 733 (1064)
+.|.+...|...+ .......+..|+.+|+|+||||.|+||.. .||||.|.|+.|+||+.|+++|+.++++....
T Consensus 553 ~kf~~~~~f~~~~----~~~~e~~~~~L~~~L~P~~lRr~kkdvek--slp~k~E~IlrVels~lQk~yYk~ILtkN~~~ 626 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF----DEETEEQVRKLQQILKPFLLRRLKKDVEK--SLPPKEETILRVELSDLQKQYYKAILTKNFSA 626 (1373)
T ss_pred CCCCcHHHHHHhh----cchhHHHHHHHHHHhhHHHHHHHHhhhcc--CCCCCcceEEEeehhHHHHHHHHHHHHhhHHH
Confidence 9999999998877 34566778899999999999999999955 59999999999999999999999998865433
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCC--CCHHHHHHHH-
Q 001510 734 AREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP--LSMDEILMVL- 810 (1064)
Q Consensus 734 a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~--~t~eelL~~L- 810 (1064)
+. . | . +.....+|+.+|.||+|||||+|+.+.-....... ...++.|..|
T Consensus 627 Lt------------K---G---~---------~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 627 LT------------K---G---A---------KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred Hh------------c---c---C---------CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 21 1 1 0 01124699999999999999999876654332111 1123433222
Q ss_pred --------HHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHHHHHH-----HHHHHHhhccCCC---CcCe---
Q 001510 811 --------IGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDP---LLNI--- 871 (1064)
Q Consensus 811 --------l~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~~~l~-----~~~e~~~~f~~D~---~~~l--- 871 (1064)
|+++.....+.+|+||||||++.|||||++++......|++..+ .++..++.|+... |.+|
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLST 759 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLST 759 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEec
Confidence 33444444555599999999999999999999988888887654 5666677777543 4444
Q ss_pred ---eEEeccC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhhhhhcccccC--------
Q 001510 872 ---HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREEN-------- 929 (1064)
Q Consensus 872 ---h~~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~~~~~~~-------- 929 (1064)
++++||+ ||||++|+|||+ ||||||++.|+||||||++|+||-|.+.||+|+++++.-
T Consensus 760 RAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~ 839 (1373)
T KOG0384|consen 760 RAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKG 839 (1373)
T ss_pred ccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence 6788998 999999999999 999999999999999999999999999999999988421
Q ss_pred ----CCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHH
Q 001510 930 ----SDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCN 1005 (1064)
Q Consensus 930 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~a~~~~~~~~~~v~~ 1005 (1064)
++.-.+++|.+...+..++.+..... ...-+...++++..+..+++-..... .+. .+|.-+.-+|.+
T Consensus 840 ~~s~~~~f~K~ELsaILKfGA~~lfke~en-----e~s~~~e~DIDeIL~rae~~~t~~~~---~~~-a~e~ls~fkvad 910 (1373)
T KOG0384|consen 840 KTSKSNPFSKEELSAILKFGAYELFKEEEN-----EESKFCEMDIDEILERAETRITEESD---FMK-ASELLSQFKVAD 910 (1373)
T ss_pred ccCCCCCCCHHHHHHHHHhchHHhhhcccc-----ccccccccCHHHHHhhcccccccccc---cch-hHHHHhhccccc
Confidence 11116667777777788888876422 12256667788888877776655543 222 233334444444
Q ss_pred Hhhh----ccccCChhHHHHHHhhhcCccchHHHHHHHHHh
Q 001510 1006 ALDD----REKQYSAWWLEALHHAEGNKDFSAELIRKIEEA 1042 (1064)
Q Consensus 1006 ~~~~----~~~~~~~ww~~~l~~~~~~~~~~~~l~~~i~~~ 1042 (1064)
+..+ ......-=|-+++..-+..+-..++-.+.+++.
T Consensus 911 ~~~dd~~~~~~~~didwd~iipe~~r~~~~eeer~ke~ee~ 951 (1373)
T KOG0384|consen 911 IKADDPADLEAERDIDWDRIIPEEERERIEEEERLKELEEL 951 (1373)
T ss_pred cccCChhhhhhhccCChhhhCCHHHHhcchhhhhHHHHHhh
Confidence 3321 000011237777777766655555555555544
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.9e-74 Score=669.38 Aligned_cols=365 Identities=21% Similarity=0.305 Sum_probs=296.2
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccc--------cccchhhhhcCCCEEEEehHHHhhhcccC
Q 001510 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD--------TSIMDISELVGADIVLTTYDVLKEDLSHD 570 (1064)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~--------~~~~~~~~l~~~DVVITTYetL~~d~~~~ 570 (1064)
+|+|||||++|+.||++|+.+|+| .++|.+|||........ .............|+||||+.++..-
T Consensus 256 ~paLIVCP~Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~--- 330 (923)
T KOG0387|consen 256 KPALIVCPATIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG--- 330 (923)
T ss_pred CceEEEccHHHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC---
Confidence 899999999999999999999998 89999999986531100 00111233345679999999998753
Q ss_pred CCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhc
Q 001510 571 SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1064)
Q Consensus 571 ~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1064)
..+..+.|++|||||||+|||++|+.+.+|++|++.+|++||||||||+|.|||+|++|
T Consensus 331 ---------------------d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDF 389 (923)
T KOG0387|consen 331 ---------------------DDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDF 389 (923)
T ss_pred ---------------------cccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhh
Confidence 25889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccchhhhhhcCCCCCCCh------------hhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHH
Q 001510 651 LKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 718 (1064)
Q Consensus 651 L~p~~f~~~~~F~~~~~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~ 718 (1064)
+.|+.+|+...|.+.|..||..|.. ...-.|+.+++||||||+|+||.. +.||.|.+.|++|.||+.
T Consensus 390 v~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~ 468 (923)
T KOG0387|consen 390 VFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKL 468 (923)
T ss_pred ccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHH
Confidence 9999999999999999999988653 233478999999999999999987 679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccC
Q 001510 719 EEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ 798 (1064)
Q Consensus 719 Qr~lY~~~~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~ 798 (1064)
|+++|+++.+.- ++ ..+.+ . ...+|..+..||++||||.|....-.....
T Consensus 469 QR~~Y~~fl~s~--~v----~~i~n----g--------------------~~~~l~Gi~iLrkICnHPdll~~~~~~~~~ 518 (923)
T KOG0387|consen 469 QRRLYQRFLNSS--EV----NKILN----G--------------------KRNCLSGIDILRKICNHPDLLDRRDEDEKQ 518 (923)
T ss_pred HHHHHHHHhhhH--HH----HHHHc----C--------------------CccceechHHHHhhcCCcccccCccccccc
Confidence 999999987531 11 11111 1 134677888999999999998764211111
Q ss_pred CC--------CCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhh-HHHHHHH-----HHHHHHHHhhcc
Q 001510 799 SP--------LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA-VSLYKEA-----MAVVEEHSEDFR 864 (1064)
Q Consensus 799 ~~--------~t~eelL~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a-~~~y~~~-----l~~~~e~~~~f~ 864 (1064)
++ ...-+++..|+..+..++ +++++|+|...||+|||..+..+ ...|... ...++..+++|+
T Consensus 519 ~~D~~g~~k~sGKm~vl~~ll~~W~kqg----~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fn 594 (923)
T KOG0387|consen 519 GPDYEGDPKRSGKMKVLAKLLKDWKKQG----DRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFN 594 (923)
T ss_pred CCCcCCChhhcchHHHHHHHHHHHhhCC----CEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhc
Confidence 11 112367888888887777 89999999999999999988743 3334433 347888999999
Q ss_pred CCCCcCe--------eEEeccC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhhhhhc
Q 001510 865 LDPLLNI--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1064)
Q Consensus 865 ~D~~~~l--------h~~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~~ 924 (1064)
.|....+ +.+.||+ +|||..|+||.+ |+||||+|+|.||||++.|||||++...|=.|-.
T Consensus 595 e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~ 673 (923)
T KOG0387|consen 595 EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQF 673 (923)
T ss_pred CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHH
Confidence 8886444 4566776 799999999999 9999999999999999999999999876654433
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.6e-73 Score=681.47 Aligned_cols=373 Identities=23% Similarity=0.333 Sum_probs=305.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.-|.|||||++|..+|+.|+.+|+| .++|..|.|....+.. ......+++|+||||+++++|+.
T Consensus 1031 ~~PSLIVCPsTLtGHW~~E~~kf~p--fL~v~~yvg~p~~r~~-----lR~q~~~~~iiVtSYDv~RnD~d--------- 1094 (1549)
T KOG0392|consen 1031 RLPSLIVCPSTLTGHWKSEVKKFFP--FLKVLQYVGPPAERRE-----LRDQYKNANIIVTSYDVVRNDVD--------- 1094 (1549)
T ss_pred cCCeEEECCchhhhHHHHHHHHhcc--hhhhhhhcCChHHHHH-----HHhhccccceEEeeHHHHHHHHH---------
Confidence 3589999999999999999999998 7999999998765432 45667788999999999999984
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1064)
.|.++.|.++||||+|.|||.+++++++++.|++.||++||||||||++.|||+||+||.|+++|
T Consensus 1095 ---------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLG 1159 (1549)
T KOG0392|consen 1095 ---------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLG 1159 (1549)
T ss_pred ---------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcCCCCCC------------ChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHH
Q 001510 658 ISRWWIEVIRDPYENG------------DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 725 (1064)
Q Consensus 658 ~~~~F~~~~~~pi~~~------------~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~ 725 (1064)
+.+.|.++|.+||... ...+++.||+.+-|||+||+|+||+.+ ||||.....+|+|||.|+++|+.
T Consensus 1160 tEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D--LPpKIIQDyyCeLs~lQ~kLY~d 1237 (1549)
T KOG0392|consen 1160 TEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD--LPPKIIQDYYCELSPLQKKLYRD 1237 (1549)
T ss_pred cHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhheeeccCHHHHHHHHH
Confidence 9999999999998652 125788999999999999999999887 99999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccc----c-----
Q 001510 726 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRS----L----- 796 (1064)
Q Consensus 726 ~~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~----l----- 796 (1064)
+.++..... ....+ + ......+ ...++++.|..||+.||||.|+.....+ .
T Consensus 1238 f~~~~k~~~----~~~~d--------~------~~~S~gt--~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~ 1297 (1549)
T KOG0392|consen 1238 FVKKAKQCV----SSQID--------G------GEESLGT--DKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLA 1297 (1549)
T ss_pred HHHHhcccc----ccccc--------c------chhccCc--chHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHH
Confidence 866521111 11000 1 0001111 2689999999999999999997653111 0
Q ss_pred ---------cCCCCCHHHHHHHHHHHHHHhhh----------hhcchHHHHHhHHHHHHHHHHhhhhhHH---HHHHHH-
Q 001510 797 ---------QQSPLSMDEILMVLIGKTKIEGE----------EALRKLVMALNGLAGIALIEKNLSQAVS---LYKEAM- 853 (1064)
Q Consensus 797 ---------~~~~~t~eelL~~Ll~~~~~e~~----------e~lrkvlifsq~la~L~iIe~~l~~a~~---~y~~~l- 853 (1064)
+.++ .-..|..|+..|...-. -.+|++|||+|+..||+++++++-++-. .|-...
T Consensus 1298 ~~~~~LHdi~hsp--Kl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDG 1375 (1549)
T KOG0392|consen 1298 HFNSSLHDIQHSP--KLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDG 1375 (1549)
T ss_pred HhhhhHHHhhhch--hHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecC
Confidence 1111 12356666665543211 2689999999999999999999877622 133332
Q ss_pred ----HHHHHHHhhccCCCCcCe--------eEEeccC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCc
Q 001510 854 ----AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHS 910 (1064)
Q Consensus 854 ----~~~~e~~~~f~~D~~~~l--------h~~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t 910 (1064)
+.|.+.+++|+.||--.+ +++.||+ |||||+|.||+| ||||||++.|+||||||+||
T Consensus 1376 SVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1376 SVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred CCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 378999999999974222 4588998 999999999999 99999999999999999999
Q ss_pred cccchhhHhhhhhcc
Q 001510 911 IETCDENARKCQRVS 925 (1064)
Q Consensus 911 ~ee~~~~~~k~~~~~ 925 (1064)
+||++|.+||-|+--
T Consensus 1456 LEEKVMgLQkFKmnv 1470 (1549)
T KOG0392|consen 1456 LEEKVMGLQKFKMNV 1470 (1549)
T ss_pred HHHHHhhHHHHhhHH
Confidence 999999999998643
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=5.3e-70 Score=632.80 Aligned_cols=376 Identities=21% Similarity=0.269 Sum_probs=293.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.||.|||||+|++.||.+||.+||| +|+|..|+|+...+...+..+. ..-..|||++|||..+....+ +
T Consensus 448 ~gpHLVVvPsSTleNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~-~~~~~ydVllTTY~la~~~kd--------D 516 (941)
T KOG0389|consen 448 PGPHLVVVPSSTLENWLREFAKWCP--SLKVEPYYGSQDERRELRERIK-KNKDDYDVLLTTYNLAASSKD--------D 516 (941)
T ss_pred CCCcEEEecchhHHHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHh-ccCCCccEEEEEeecccCChH--------H
Confidence 4899999999999999999999998 9999999999876543332222 222389999999999875321 1
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1064)
| +.|....|++||.||||++||..|.+++.+..++|.+|++|||||+||+|.||++||.|+.|..|.
T Consensus 517 R-------------sflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~ 583 (941)
T KOG0389|consen 517 R-------------SFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFD 583 (941)
T ss_pred H-------------HHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhh
Confidence 2 568889999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc-chhhhhhcCCCC-CCC-------hhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 001510 658 IS-RWWIEVIRDPYE-NGD-------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHE 728 (1064)
Q Consensus 658 ~~-~~F~~~~~~pi~-~~~-------~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~ 728 (1064)
+. ..+...|...-. .++ .+.+.+.+.+++||+|||.|++|+++ ||||..+|.+|+|+..|+++|+.+.+
T Consensus 584 ~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~--LPpK~~~Ie~c~mse~Q~~~Y~~~~~ 661 (941)
T KOG0389|consen 584 SSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ--LPPKIQRIEYCEMSEKQKQLYDELIE 661 (941)
T ss_pred ccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCccceeEeeecchHHHHHHHHHHH
Confidence 64 344444432111 121 24577888999999999999999887 99999999999999999999998876
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccc-----c-------
Q 001510 729 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRS-----L------- 796 (1064)
Q Consensus 729 ~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~-----l------- 796 (1064)
... ....+. +.+. . ... -+.||+|||++|||.|...-... +
T Consensus 662 ~~~-----------~~~~~~------~~ns--~-------~~~-~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e 714 (941)
T KOG0389|consen 662 LYD-----------VKLNEV------SKNS--E-------LKS-GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNE 714 (941)
T ss_pred HHh-----------hhcccc------cccc--c-------ccc-chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCc
Confidence 430 000000 1110 0 001 45899999999999985432211 0
Q ss_pred ---------------------------------cCCCC--------CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 001510 797 ---------------------------------QQSPL--------SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835 (1064)
Q Consensus 797 ---------------------------------~~~~~--------t~eelL~~Ll~~~~~e~~e~lrkvlifsq~la~L 835 (1064)
.+..+ ..-..|..|+.+++.+| ++||+||||+.||
T Consensus 715 ~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G----~RVLiFSQFTqmL 790 (941)
T KOG0389|consen 715 PAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG----DRVLIFSQFTQML 790 (941)
T ss_pred hhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC----CEEEEeeHHHHHH
Confidence 00000 01125677777777666 8999999999999
Q ss_pred HHHHHhhhhhHHHHHHHH-----HHHHHHHhhccCCCCcCe--------eEEeccC----------ccCcchhhhhhh-h
Q 001510 836 ALIEKNLSQAVSLYKEAM-----AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCATE-L 891 (1064)
Q Consensus 836 ~iIe~~l~~a~~~y~~~l-----~~~~e~~~~f~~D~~~~l--------h~~~Nl~----------~~np~~~~Qa~~-~ 891 (1064)
||||-.+..--..|.+.. ..|+..+++|..|.-.++ +.++||+ ++||..|.||.| |
T Consensus 791 DILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRc 870 (941)
T KOG0389|consen 791 DILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRC 870 (941)
T ss_pred HHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHH
Confidence 999998877666666544 378889999999885433 4455555 699999999999 9
Q ss_pred hccCCCCceEEEEcccCCccccchhhHhhhhhcccccCC
Q 001510 892 SQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENS 930 (1064)
Q Consensus 892 ~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~~~~~~~~ 930 (1064)
||+||+|+|+|||||+++||||.|..++|+|..++...+
T Consensus 871 HRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 871 HRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred HhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 999999999999999999999999999999999998553
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.7e-68 Score=661.73 Aligned_cols=365 Identities=20% Similarity=0.246 Sum_probs=291.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.+|+|||||+|++.||.+||.+|+| .+++++|+|....+.... ........++||||||+++.++.
T Consensus 219 ~gp~LIVvP~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~--~~~~~~~~~dVvITSYe~l~~e~---------- 284 (1033)
T PLN03142 219 TGPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQR--EELLVAGKFDVCVTSFEMAIKEK---------- 284 (1033)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHH--HHHhcccCCCcceecHHHHHHHH----------
Confidence 4799999999999999999999997 899999999765431100 01112357999999999998864
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1064)
..|..+.|++|||||||+|||..|+++++++.|++.+||+|||||+||++.|||+||+||.|+.|+
T Consensus 285 --------------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~ 350 (1033)
T PLN03142 285 --------------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFS 350 (1033)
T ss_pred --------------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCC
Confidence 357889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcCCCCCCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 001510 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1064)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~ 737 (1064)
+...|..+|..+........+..|+.+++|||+||+|++|... |||+.+.+++|.||+.|+++|+.+.......+
T Consensus 351 s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~--LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l--- 425 (1033)
T PLN03142 351 SAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG--LPPKKETILKVGMSQMQKQYYKALLQKDLDVV--- 425 (1033)
T ss_pred CHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh--CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH---
Confidence 9999999998765556667788999999999999999999665 99999999999999999999998876432111
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccC-------CCCCHHHHHHHH
Q 001510 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ-------SPLSMDEILMVL 810 (1064)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~-------~~~t~eelL~~L 810 (1064)
. . ......+++.+++||++||||+|+.+....... .....-.+|+.|
T Consensus 426 -~--------~-----------------g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 426 -N--------A-----------------GGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred -h--------c-----------------cccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 0 0 001346889999999999999997654321100 001122456667
Q ss_pred HHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHHhhccCCCCc---Ce-----------
Q 001510 811 IGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK-----EAMAVVEEHSEDFRLDPLL---NI----------- 871 (1064)
Q Consensus 811 l~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~-----~~l~~~~e~~~~f~~D~~~---~l----------- 871 (1064)
+.+++.. .+++|||+|++.+|++|++.+......|. .....+++.++.|+.+... .|
T Consensus 480 L~~Lk~~----g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 480 LPKLKER----DSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHhc----CCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 6666554 48999999999999999998765433332 1234677888888764321 11
Q ss_pred ------eEEeccCccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhhhhhccc
Q 001510 872 ------HLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR 926 (1064)
Q Consensus 872 ------h~~~Nl~~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~~~~ 926 (1064)
.|+|.+ +|||+++.||++ ||||||+++|.||||++++||||.+++.+.+|.-..
T Consensus 556 Lt~Ad~VIiyD~-dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld 616 (1033)
T PLN03142 556 LATADIVILYDS-DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALD 616 (1033)
T ss_pred hhhCCEEEEeCC-CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 334444 599999999999 999999999999999999999999999998887654
No 8
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-67 Score=621.64 Aligned_cols=232 Identities=25% Similarity=0.437 Sum_probs=201.9
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
||.|||||.|++-||+-||++||| +++++.|.|..+.+...+. ....-..|.|.||||.++..++
T Consensus 666 GPHLIVVpTsviLnWEMElKRwcP--glKILTYyGs~kErkeKRq--gW~kPnaFHVCItSYklv~qd~----------- 730 (1958)
T KOG0391|consen 666 GPHLIVVPTSVILNWEMELKRWCP--GLKILTYYGSHKERKEKRQ--GWAKPNAFHVCITSYKLVFQDL----------- 730 (1958)
T ss_pred CCceEEeechhhhhhhHHHhhhCC--cceEeeecCCHHHHHHHhh--cccCCCeeEEeehhhHHHHhHH-----------
Confidence 899999999999999999999998 9999999999887643322 2334456889999999999987
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCc
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1064)
..|.+..|.++||||||+|||.+|+.++++..+++.+|++|||||+||++.|||+|++||.|..|.+
T Consensus 731 -------------~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~s 797 (1958)
T KOG0391|consen 731 -------------TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFAS 797 (1958)
T ss_pred -------------HHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhh
Confidence 3588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcCCCCC---C----ChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 001510 659 SRWWIEVIRDPYEN---G----DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCV 731 (1064)
Q Consensus 659 ~~~F~~~~~~pi~~---~----~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~ 731 (1064)
...|+.+|.+|+.. + +...+.+||++++||+|||+|.||.++ ||.|.|+|++|.||..|+.+|+.+..+..
T Consensus 798 hd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ--lpkKyEHvv~CrLSkRQR~LYDDfmsq~~ 875 (1958)
T KOG0391|consen 798 HDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ--LPKKYEHVVKCRLSKRQRALYDDFMSQPG 875 (1958)
T ss_pred hhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh--cchhhhhheeeehhhhHHHHHHHHhhccc
Confidence 99999999998754 1 236678999999999999999999665 99999999999999999999998754311
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCC
Q 001510 732 GYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQV 788 (1064)
Q Consensus 732 ~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L 788 (1064)
. +. .+...+.++|++.||+||++||||-|
T Consensus 876 T---------Ke-------------------tLkSGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 876 T---------KE-------------------TLKSGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred h---------hh-------------------HhhcCchhHHHHHHHHHHHHcCCCCc
Confidence 0 00 11122368899999999999999987
No 9
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.7e-66 Score=593.54 Aligned_cols=400 Identities=25% Similarity=0.361 Sum_probs=297.1
Q ss_pred cEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccchh
Q 001510 500 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 579 (1064)
Q Consensus 500 ~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~ 579 (1064)
+||||||.||++||..||++-.....|+|++|||.++. .+.+..+.+||||||||..+.+.-.....
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r------~i~~~~L~~YDvViTTY~lva~~~~~e~~------- 451 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKR------EISAKELRKYDVVITTYNLVANKPDDELE------- 451 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccc------cCCHHHHhhcceEEEeeeccccCCchhhh-------
Confidence 69999999999999999999998889999999998752 24788999999999999999872110000
Q ss_pred hhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCcc
Q 001510 580 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSIS 659 (1064)
Q Consensus 580 ~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~~ 659 (1064)
-....++|.++.|.||||||||.|||++|+.+.+++.|.+.+|||||||||||++-|+|+|+.||+..||++.
T Consensus 452 -------~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~ 524 (901)
T KOG4439|consen 452 -------EGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL 524 (901)
T ss_pred -------cccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH
Confidence 0112378999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcCCCCCCChhhHHHHHHHHhhhheecccccccc---CCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 001510 660 RWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSD---ELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1064)
Q Consensus 660 ~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~---el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~ 736 (1064)
..|++.+..+-. ....+|.-+.+++||||||..... ...||++...++.++|+..|...|+-+.+........
T Consensus 525 ~~Wke~i~~~s~----~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq 600 (901)
T KOG4439|consen 525 KQWKENIDNMSK----GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQ 600 (901)
T ss_pred HHHHHhccCccc----cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHH
Confidence 999998865432 334678888999999999997643 3569999999999999999999999887765544444
Q ss_pred HHHHHHHHHhhccCCCCCCC--------CCccCc----------ccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccC
Q 001510 737 VIQRLKDNILKRNVPGHASS--------DALYNP----------IITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ 798 (1064)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~~~--------~~~~~~----------~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~ 798 (1064)
++.+- ..+.-.+.+.+ ...+++ .........||..|+||||+||||.+...++.....
T Consensus 601 ~L~~~----e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~ 676 (901)
T KOG4439|consen 601 FLLQR----EDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEF 676 (901)
T ss_pred HHHhh----hhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHh
Confidence 33321 11111111101 000000 001233566999999999999999775544432110
Q ss_pred ---CCC-C---------------------------------HHH---------HHHHHHHHHHHhhhhhcchHHHHHhHH
Q 001510 799 ---SPL-S---------------------------------MDE---------ILMVLIGKTKIEGEEALRKLVMALNGL 832 (1064)
Q Consensus 799 ---~~~-t---------------------------------~ee---------lL~~Ll~~~~~e~~e~lrkvlifsq~l 832 (1064)
+.+ + .++ -+...++.........-.++++-+|++
T Consensus 677 ~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwt 756 (901)
T KOG4439|consen 677 QMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWT 756 (901)
T ss_pred hhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHH
Confidence 000 0 000 011112222222234457899999999
Q ss_pred HHHHHHHHhhhhhHHHHHH-----HHHHHHHHHhhccCCCC---------cCeeEEeccC----------ccCcchhhhh
Q 001510 833 AGIALIEKNLSQAVSLYKE-----AMAVVEEHSEDFRLDPL---------LNIHLHHNLT----------EILPMVANCA 888 (1064)
Q Consensus 833 a~L~iIe~~l~~a~~~y~~-----~l~~~~e~~~~f~~D~~---------~~lh~~~Nl~----------~~np~~~~Qa 888 (1064)
.+|.+++..+.+-...|.. ....+++.++.|+...- ..-.++.||. -|||+-+.||
T Consensus 757 svLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQA 836 (901)
T KOG4439|consen 757 SVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQA 836 (901)
T ss_pred HHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHH
Confidence 9999999998887666643 23466777777765432 1114455554 6999999999
Q ss_pred hh-hhccCCCCceEEEEcccCCccccchhhHhhhhhcccc
Q 001510 889 TE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1064)
Q Consensus 889 ~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~~~~~ 927 (1064)
.| ++|+||+|+|.|||++++||+|+.++.+|.+|.-.-.
T Consensus 837 cDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~ 876 (901)
T KOG4439|consen 837 CDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAK 876 (901)
T ss_pred HHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHh
Confidence 99 9999999999999999999999999999998765544
No 10
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2e-65 Score=567.14 Aligned_cols=392 Identities=28% Similarity=0.377 Sum_probs=299.5
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
.|||||||.-.+.||.+||.+|+. |.+++++|||.++.. ...++..||+|+|||.++.+.+.+-. .|-+
T Consensus 232 a~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~~R~~-------nikel~~YDvVLTty~vvEs~yRk~~---~Gfr 300 (791)
T KOG1002|consen 232 APTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGAKRDK-------NIKELMNYDVVLTTYAVVESVYRKQD---YGFR 300 (791)
T ss_pred CCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEecccccC-------CHHHhhcCcEEEEecHHHHHHHHhcc---cccc
Confidence 579999999999999999999997 899999999987754 67889999999999999988764311 0111
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCc
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1064)
...--.+.+++|+.+.|.||||||||.||+..|.+++++..|.+.+||||||||+||++.|||+|++||+..||..
T Consensus 301 ----rKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsy 376 (791)
T KOG1002|consen 301 ----RKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSY 376 (791)
T ss_pred ----ccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchh
Confidence 1111223458999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred c-------------------------------chhhhhhcCCCCCC-----ChhhHHHHHHHHhhhheeccccccccCCC
Q 001510 659 S-------------------------------RWWIEVIRDPYENG-----DVGAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1064)
Q Consensus 659 ~-------------------------------~~F~~~~~~pi~~~-----~~~~~~~L~~lL~~~mLRRtK~dV~~el~ 702 (1064)
+ -+|......||... ...+....+.+++.+|+||||-.-++++.
T Consensus 377 yfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLg 456 (791)
T KOG1002|consen 377 YFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLG 456 (791)
T ss_pred hhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 3 23555556666552 22456678899999999999999999999
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 001510 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1064)
Q Consensus 703 LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQi 782 (1064)
|||+...+..=-|+.+|..+|+.++.........++.. +. --.++++|+..|+||||+
T Consensus 457 LPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyiee---Gv-------------------vlNNYAnIF~LitRmRQ~ 514 (791)
T KOG1002|consen 457 LPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEE---GV-------------------VLNNYANIFTLITRMRQA 514 (791)
T ss_pred CCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhh---hh-------------------hhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999886543332222111 11 123478999999999999
Q ss_pred cCCCCCCCcccc-cc---cC------------------C------------------------------CC---------
Q 001510 783 CCHPQVGSSGLR-SL---QQ------------------S------------------------------PL--------- 801 (1064)
Q Consensus 783 C~HP~L~~~~~~-~l---~~------------------~------------------------------~~--------- 801 (1064)
..||+|+..... .+ .+ + .+
T Consensus 515 aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 515 ADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred ccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence 999998543110 00 00 0 00
Q ss_pred -----------------CHHH-----HHHHHHHHHHH-hhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHH---H--HH
Q 001510 802 -----------------SMDE-----ILMVLIGKTKI-EGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK---E--AM 853 (1064)
Q Consensus 802 -----------------t~ee-----lL~~Ll~~~~~-e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~---~--~l 853 (1064)
.|++ -++.|++++.- ...+.--|-++||||+.|||+|+-.+.+|..-.- + ..
T Consensus 595 ek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~ 674 (791)
T KOG1002|consen 595 EKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSP 674 (791)
T ss_pred hhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCCh
Confidence 0100 11233332211 0111123678999999999999999988844321 2 23
Q ss_pred HHHHHHHhhccCCCCcCe--------eEEeccC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccc
Q 001510 854 AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETC 914 (1064)
Q Consensus 854 ~~~~e~~~~f~~D~~~~l--------h~~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~ 914 (1064)
..+.+.++.|..|+...+ ++-.||. ||||+++-||+| .|||||.++|.|.||+-++||||+
T Consensus 675 ~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~k 754 (791)
T KOG1002|consen 675 AARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEK 754 (791)
T ss_pred HHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHH
Confidence 466777888888886444 5667776 899999999999 999999999999999999999999
Q ss_pred hhhHhhhhhcccc
Q 001510 915 DENARKCQRVSRE 927 (1064)
Q Consensus 915 ~~~~~k~~~~~~~ 927 (1064)
|.++||+|.---+
T Consensus 755 IieLQeKKa~mih 767 (791)
T KOG1002|consen 755 IIELQEKKANMIH 767 (791)
T ss_pred HHHHHHHHhhhhh
Confidence 9999999765544
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=5.9e-66 Score=587.92 Aligned_cols=357 Identities=24% Similarity=0.312 Sum_probs=294.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch----hhhhcCCCEEEEehHHHhhhcccCCCC
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD----ISELVGADIVLTTYDVLKEDLSHDSDR 573 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~----~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1064)
-||+|||+|+|+++||.+||.+|+| .++++.|.|....+...+.... -...+.++||||||.++..|..
T Consensus 617 wGPFLVVtpaStL~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek----- 689 (1185)
T KOG0388|consen 617 WGPFLVVTPASTLHNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK----- 689 (1185)
T ss_pred CCceEEeehHHHHhHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH-----
Confidence 4899999999999999999999998 9999999999776532222111 2245678999999999988753
Q ss_pred cccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCC
Q 001510 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1064)
Q Consensus 574 ~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1064)
.|.++.|.++||||||.||+..|.+++.+..+++++|++||||||||+..|||+||+|+.|
T Consensus 690 -------------------y~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMP 750 (1185)
T KOG0388|consen 690 -------------------YLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMP 750 (1185)
T ss_pred -------------------HHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhcCCCCC-------CChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHH
Q 001510 654 SPFSISRWWIEVIRDPYEN-------GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1064)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~-------~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~ 726 (1064)
..|++...|.++|...|+. -+...+.+||.+|+||||||.|++|..+ |-.|++..++|.||-.|+.+|+.+
T Consensus 751 sLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE--Lg~Kteidv~CdLs~RQ~~lYq~i 828 (1185)
T KOG0388|consen 751 SLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE--LGQKTEIDVYCDLSYRQKVLYQEI 828 (1185)
T ss_pred HhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH--hccceEEEEEechhHHHHHHHHHH
Confidence 9999999999999887765 2457889999999999999999999877 999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcc-------------c
Q 001510 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG-------------L 793 (1064)
Q Consensus 727 ~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~-------------~ 793 (1064)
...+. ...+...+|+||++||||.|+... +
T Consensus 829 k~~iS-------------------------------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl 871 (1185)
T KOG0388|consen 829 KRSIS-------------------------------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNL 871 (1185)
T ss_pred HHHhh-------------------------------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCH
Confidence 76542 123445889999999999873210 0
Q ss_pred cc------------------------------------------ccC----------------CCC--------------
Q 001510 794 RS------------------------------------------LQQ----------------SPL-------------- 801 (1064)
Q Consensus 794 ~~------------------------------------------l~~----------------~~~-------------- 801 (1064)
.. +.+ +++
T Consensus 872 ~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr 951 (1185)
T KOG0388|consen 872 GDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTR 951 (1185)
T ss_pred HHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHH
Confidence 00 000 000
Q ss_pred -------------------------------------------------------------------CHHH---------
Q 001510 802 -------------------------------------------------------------------SMDE--------- 805 (1064)
Q Consensus 802 -------------------------------------------------------------------t~ee--------- 805 (1064)
.|..
T Consensus 952 ~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~ 1031 (1185)
T KOG0388|consen 952 NLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLV 1031 (1185)
T ss_pred HhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhcccccee
Confidence 0000
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHHHH-----HHHHHHHHhhccC-CCCcCe------eE
Q 001510 806 ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEA-----MAVVEEHSEDFRL-DPLLNI------HL 873 (1064)
Q Consensus 806 lL~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~~~-----l~~~~e~~~~f~~-D~~~~l------h~ 873 (1064)
+|+.|+.+++.++ |++|+|.|++.|+++|++++......|-.. +..+.+.+.+++. |.|.+| +.
T Consensus 1032 ~LDeLL~kLkaeg----HRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEG----HRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred eHHHHHHHhhcCC----ceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 5688888888888 999999999999999999987766555433 3466778888876 333333 55
Q ss_pred EeccC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhhhhh
Q 001510 874 HHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1064)
Q Consensus 874 ~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~ 923 (1064)
++||+ ||||..|.||+| |||.||+++|+||||+++||+||++.+.+++|.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~ 1168 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKD 1168 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHH
Confidence 67776 899999999999 999999999999999999999999999999863
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.1e-64 Score=592.67 Aligned_cols=365 Identities=21% Similarity=0.276 Sum_probs=298.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.||.|||||.|++.||..||.+|+| ++..++|.|....|.... ..-...+|+|++|||+.+.++-
T Consensus 444 ~GP~LvivPlstL~NW~~Ef~kWaP--Sv~~i~YkGtp~~R~~l~---~qir~gKFnVLlTtyEyiikdk---------- 508 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVNWSSEFPKWAP--SVQKIQYKGTPQQRSGLT---KQQRHGKFNVLLTTYEYIIKDK---------- 508 (1157)
T ss_pred CCCeEEeccccccCCchhhcccccc--ceeeeeeeCCHHHHhhHH---HHHhcccceeeeeeHHHhcCCH----------
Confidence 4899999999999999999999998 999999999977653221 2222388999999999998753
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHH-HhccCeEEEEeccCCCCChhhhHhhhhccCCCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~-~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1064)
..|.++.|.++||||+|++||..++++..+. ...+.+|++|||||+||++.|||+||+||-|..|
T Consensus 509 --------------~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IF 574 (1157)
T KOG0386|consen 509 --------------ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIF 574 (1157)
T ss_pred --------------HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchh
Confidence 5799999999999999999999999999998 6789999999999999999999999999999999
Q ss_pred CccchhhhhhcCCCCCCCh----------hhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHH
Q 001510 657 SISRWWIEVIRDPYENGDV----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1064)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~~----------~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~ 726 (1064)
.+...|..+|..||..... -.+.+|+.+|+||++||.|++|..+ ||.|++.++.|.||..|+.+|..+
T Consensus 575 nS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~--LPdKve~viKC~mSalQq~lY~~m 652 (1157)
T KOG0386|consen 575 NSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE--LPDKVEDVIKCDMSALQQSLYKQM 652 (1157)
T ss_pred hhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh--CchhhhHhhheehhhhhHhhhHHH
Confidence 9999999999999976321 3467999999999999999999766 999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccc--cCCC----
Q 001510 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSL--QQSP---- 800 (1064)
Q Consensus 727 ~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l--~~~~---- 800 (1064)
...-. ... +..-.+..+..+++.+|.||++||||+++..--... ....
T Consensus 653 ~~~g~----------------------l~~----d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~ 706 (1157)
T KOG0386|consen 653 QNKGQ----------------------LLK----DTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLV 706 (1157)
T ss_pred HhCCC----------------------CCc----CchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHH
Confidence 53210 000 000112235678999999999999999973221111 1111
Q ss_pred --CCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHHHHHH-----HHHHHHhhccCCC-CcCe-
Q 001510 801 --LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDP-LLNI- 871 (1064)
Q Consensus 801 --~t~eelL~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~~~l~-----~~~e~~~~f~~D~-~~~l- 871 (1064)
....|+|+.++.+++..+ |+||.|+|++.+++|+++++.-.-..|....+ .+.+..+.|+... -.++
T Consensus 707 R~sGKfELLDRiLPKLkatg----HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATG----HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcC----cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 134578888888888777 99999999999999999999888888876654 4455667776422 2122
Q ss_pred -------eEEeccC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhhhhh
Q 001510 872 -------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1064)
Q Consensus 872 -------h~~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~ 923 (1064)
+.+.||- ||||..+.||+| ||||||+++|.|+|+++.+++||+|+..++.|.
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl 852 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKL 852 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhc
Confidence 3444544 899999999999 999999999999999999999999999977764
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=4.6e-55 Score=523.64 Aligned_cols=369 Identities=18% Similarity=0.194 Sum_probs=280.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccc-cccc-hhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD-TSIM-DISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~-~~~~-~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
....|||||.+|+.+|.+||.+|..+..+..+.+.|..+...-. .... .....-.+-|.|.||++++....
T Consensus 298 ~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~------- 370 (776)
T KOG0390|consen 298 INKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR------- 370 (776)
T ss_pred ccccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH-------
Confidence 46789999999999999999999986688888888876641000 0000 01112235689999999997653
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCC
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~ 655 (1064)
.+.....+++|+||||++||..|.+.+++.+|++.+|++|||||+||++.|+|++|+|++|+.
T Consensus 371 -----------------~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~ 433 (776)
T KOG0390|consen 371 -----------------KILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGF 433 (776)
T ss_pred -----------------HHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhh
Confidence 477888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhhcCCCCCCCh-----------hhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHH
Q 001510 656 FSISRWWIEVIRDPYENGDV-----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQ 724 (1064)
Q Consensus 656 f~~~~~F~~~~~~pi~~~~~-----------~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~ 724 (1064)
+++...|+..+..|+.+++. +.+..|+.+++.|++||+-+...+. ||++.++|+.|.+|+.|+.+|.
T Consensus 434 Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~--LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 434 LGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY--LPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred ccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh--CCCceeEEEEeCCcHHHHHHHH
Confidence 99999999999999877432 2367799999999999999777666 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCC------cc--ccc-
Q 001510 725 SQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS------SG--LRS- 795 (1064)
Q Consensus 725 ~~~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~------~~--~~~- 795 (1064)
.+..... .... ....|..++.|+++||||.|.. +. +..
T Consensus 512 ~l~~~~~-------~~~~--------------------------~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~ 558 (776)
T KOG0390|consen 512 KLLDSMK-------MRTL--------------------------KGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNP 558 (776)
T ss_pred HHHHHHH-------hhhh--------------------------hcchhhHHHHHHHHhcCHHhhcccccccccccccCh
Confidence 8865320 0000 1125788999999999999974 10 000
Q ss_pred ---ccCC--C-----CCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHH-----HHHHHHHHHHH
Q 001510 796 ---LQQS--P-----LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY-----KEAMAVVEEHS 860 (1064)
Q Consensus 796 ---l~~~--~-----~t~eelL~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y-----~~~l~~~~e~~ 860 (1064)
+... . ....-.+..|+.-+..-.++.+.++++-+|.+..|+++++.+.-...-+ ......|+..+
T Consensus 559 ~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~v 638 (776)
T KOG0390|consen 559 ALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLV 638 (776)
T ss_pred HhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHH
Confidence 0000 0 0001122223322223334445688888899999999998765542211 12345788899
Q ss_pred hhccCCCCc-Ce--------eEEeccC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhh
Q 001510 861 EDFRLDPLL-NI--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARK 920 (1064)
Q Consensus 861 ~~f~~D~~~-~l--------h~~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k 920 (1064)
+.|+-.+.+ ++ ..+.||. +|||++|.||++ |||.||+|+|.+|||++.|||||++.+.|-
T Consensus 639 d~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~ 718 (776)
T KOG0390|consen 639 DTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQT 718 (776)
T ss_pred HhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHH
Confidence 999766554 22 5566776 899999999999 999999999999999999999999999886
Q ss_pred hhhcc
Q 001510 921 CQRVS 925 (1064)
Q Consensus 921 ~~~~~ 925 (1064)
.|...
T Consensus 719 ~K~~l 723 (776)
T KOG0390|consen 719 HKEGL 723 (776)
T ss_pred Hhhhh
Confidence 65543
No 14
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.7e-51 Score=496.24 Aligned_cols=370 Identities=30% Similarity=0.425 Sum_probs=297.2
Q ss_pred CCCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 497 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 497 ~~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
..+.+|||||.+++.||..|+.+...++.+.+++|+| +.. ....+.+||||||||.++..
T Consensus 188 ~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g-r~k--------d~~el~~~dVVltTy~il~~----------- 247 (674)
T KOG1001|consen 188 EFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG-RTK--------DKSELNSYDVVLTTYDILKN----------- 247 (674)
T ss_pred ccCceeEecchHHHHHHHHHHhccCCccceEEEEecc-ccc--------ccchhcCCceEEeeHHHhhc-----------
Confidence 3579999999999999999998888888999999999 211 67788999999999999985
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1064)
++|..+.|.|||+||||.++|.+++.++++..|.+.+||||||||+||+++|||+++.|+..+||
T Consensus 248 ---------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~ 312 (674)
T KOG1001|consen 248 ---------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPY 312 (674)
T ss_pred ---------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCc
Confidence 35888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhcCCCCCCC-hhhHHHHHHHHhhhheeccccccc---cCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 001510 657 SISRWWIEVIRDPYENGD-VGAMEFTHKFFKEIMCRSSKVHVS---DELQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 732 (1064)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~-~~~~~~L~~lL~~~mLRRtK~dV~---~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~ 732 (1064)
....+|...+..|+..+. ......++.+++.+|+||+|..-. ..+.|||++..++++.++..|+.+|..+...+..
T Consensus 313 ~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~ 392 (674)
T KOG1001|consen 313 CDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRN 392 (674)
T ss_pred hhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhh
Confidence 999999999999999887 688889999999999999998543 2457999999999999999999999999877655
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccC--------------
Q 001510 733 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ-------------- 798 (1064)
Q Consensus 733 ~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~-------------- 798 (1064)
.......... ...++..++..+++|||+||||+++.........
T Consensus 393 ~~~~~~~~~~----------------------~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~ 450 (674)
T KOG1001|consen 393 QFSNYANEGT----------------------VSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVD 450 (674)
T ss_pred HHHHHhhhch----------------------hhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHH
Confidence 5443222200 1234788999999999999999985422111000
Q ss_pred ---------------CCC---CHHHHH------------------------HHHHHH-----------------------
Q 001510 799 ---------------SPL---SMDEIL------------------------MVLIGK----------------------- 813 (1064)
Q Consensus 799 ---------------~~~---t~eelL------------------------~~Ll~~----------------------- 813 (1064)
... .+.... ..++..
T Consensus 451 l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~ 530 (674)
T KOG1001|consen 451 LSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKI 530 (674)
T ss_pred HhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHH
Confidence 000 000000 111110
Q ss_pred H-HHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHHhhccCCCCcCe--------eEEeccC-
Q 001510 814 T-KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK-----EAMAVVEEHSEDFRLDPLLNI--------HLHHNLT- 878 (1064)
Q Consensus 814 ~-~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~-----~~l~~~~e~~~~f~~D~~~~l--------h~~~Nl~- 878 (1064)
+ ..+..+. .++++|+|++.++++++-.+......|. ..+..+......|..|+.+.+ .+++||.
T Consensus 531 l~~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~ 609 (674)
T KOG1001|consen 531 LQAKEMSEQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTA 609 (674)
T ss_pred HhhccCCCC-CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhh
Confidence 0 1123333 4999999999999999987776544432 334566677778888887554 4455555
Q ss_pred ---------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhhhhhc
Q 001510 879 ---------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1064)
Q Consensus 879 ---------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~~~~ 924 (1064)
+|||..+.||+| ||||||+++|+|+|++.++|+||.++..++||+-
T Consensus 610 a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~ 665 (674)
T KOG1001|consen 610 ASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKRE 665 (674)
T ss_pred hhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHH
Confidence 899999999999 9999999999999999999999999999999864
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5e-52 Score=527.00 Aligned_cols=376 Identities=25% Similarity=0.331 Sum_probs=291.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCe-EEEEcCCCcc-cccccccchhhhhc------CCCEEEEehHHHhh---h
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLK-TCIYEGARNS-SLSDTSIMDISELV------GADIVLTTYDVLKE---D 566 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~-V~vy~G~~~~-~~~~~~~~~~~~l~------~~DVVITTYetL~~---d 566 (1064)
.+++|||||.+++.||.+|+.+|.+ .++ +.+|+|.... .. ......... .+++++|||+.+++ +
T Consensus 390 ~~~~liv~p~s~~~nw~~e~~k~~~--~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~ 464 (866)
T COG0553 390 LGPALIVVPASLLSNWKREFEKFAP--DLRLVLVYHGEKSELDK---KREALRDLLKLHLVIIFDVVITTYELLRRFLVD 464 (866)
T ss_pred CCCeEEEecHHHHHHHHHHHhhhCc--cccceeeeeCCcccccH---HHHHHHHHhhhcccceeeEEechHHHHHHhhhh
Confidence 4799999999999999999999998 788 9999998752 00 001222222 28999999999998 4
Q ss_pred cccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHh
Q 001510 567 LSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 646 (1064)
Q Consensus 567 ~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~s 646 (1064)
. ..+..+.|+++|+||||+|||..|..+++++.+++.+||+|||||+||++.|||+
T Consensus 465 ~------------------------~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~s 520 (866)
T COG0553 465 H------------------------GGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWS 520 (866)
T ss_pred H------------------------HHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHH
Confidence 3 4588999999999999999999999999999999999999999999999999999
Q ss_pred hhh-ccCCCCCC-ccchhhhhhcCCCCCCCh--------hhHHHHHHHHhhhheeccccc--cccCCCCCCCeEEEEEec
Q 001510 647 LLR-FLKSSPFS-ISRWWIEVIRDPYENGDV--------GAMEFTHKFFKEIMCRSSKVH--VSDELQLPPQEECVSWLT 714 (1064)
Q Consensus 647 LL~-FL~p~~f~-~~~~F~~~~~~pi~~~~~--------~~~~~L~~lL~~~mLRRtK~d--V~~el~LPpk~e~vv~v~ 714 (1064)
+++ |+.|+.++ +...|...|..|+..... ..+..|+.+++||++||+|.+ +..+ ||++.+.++.|.
T Consensus 521 l~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~--Lp~k~e~~~~~~ 598 (866)
T COG0553 521 LLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE--LPPKIEKVLECE 598 (866)
T ss_pred HHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh--CChhhhhhhhhc
Confidence 999 99999999 558899999988766432 344558899999999999999 6555 999999999999
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCc
Q 001510 715 FSPIEEHFYQSQHE---TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS 791 (1064)
Q Consensus 715 lS~~Qr~lY~~~~~---~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~ 791 (1064)
+++.|+.+|..... .....+...... .. . . ..... ....+++.+++|||+|+||.++..
T Consensus 599 l~~~q~~~y~~~~~~~~~~~~~~~~~~~~-------~~-------~-~-~~~~~--~~~~~l~~~~~lr~~~~~p~l~~~ 660 (866)
T COG0553 599 LSEEQRELYEALLEGAEKNQQLLEDLEKA-------DS-------D-E-NRIGD--SELNILALLTRLRQICNHPALVDE 660 (866)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cc-------c-c-ccccc--hhhHHHHHHHHHHHhccCcccccc
Confidence 99999999999877 322222111110 00 0 0 00000 246799999999999999999776
Q ss_pred cc-ccccC--------------------CCCCHHHHHHHHH-HHHHHhhhhhcc--hHHHHHhHHHHHHHHHHhhhhhHH
Q 001510 792 GL-RSLQQ--------------------SPLSMDEILMVLI-GKTKIEGEEALR--KLVMALNGLAGIALIEKNLSQAVS 847 (1064)
Q Consensus 792 ~~-~~l~~--------------------~~~t~eelL~~Ll-~~~~~e~~e~lr--kvlifsq~la~L~iIe~~l~~a~~ 847 (1064)
.. ..... ..+..-..++.++ .....++ + ++++|+|++.++++|+..+.....
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~----~~~kvlifsq~t~~l~il~~~l~~~~~ 736 (866)
T COG0553 661 GLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEG----HYHKVLIFSQFTPVLDLLEDYLKALGI 736 (866)
T ss_pred ccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhc----ccccEEEEeCcHHHHHHHHHHHHhcCC
Confidence 51 11100 0002234556666 5555555 6 999999999999999998877652
Q ss_pred HH---HHH--HHHHHHHHhhccCCCC--------cCeeEEeccC----------ccCcchhhhhhh-hhccCCCCceEEE
Q 001510 848 LY---KEA--MAVVEEHSEDFRLDPL--------LNIHLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSE 903 (1064)
Q Consensus 848 ~y---~~~--l~~~~e~~~~f~~D~~--------~~lh~~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v~v~ 903 (1064)
.| .+. ...+.+.++.|+.++- ...+++.||. +|||+++.||+| ||||||+++|.||
T Consensus 737 ~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 737 KYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 22 222 3567788888888632 1224555555 799999999999 9999999999999
Q ss_pred EcccCCccccchhhHhhhhhccc
Q 001510 904 KAFKIHSIETCDENARKCQRVSR 926 (1064)
Q Consensus 904 rl~~~~t~ee~~~~~~k~~~~~~ 926 (1064)
|+++++|+||+|...+..|.-..
T Consensus 817 r~i~~~tiEe~i~~~~~~K~~l~ 839 (866)
T COG0553 817 RLITRGTIEEKILELQEKKQELL 839 (866)
T ss_pred EeecCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999984433
No 16
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=4.1e-49 Score=460.14 Aligned_cols=384 Identities=17% Similarity=0.203 Sum_probs=275.2
Q ss_pred CCCcEEEEeCCchHHHHHHHHHhcCCC----CCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCC
Q 001510 497 ATGATLIVCPAPILAQWDAEITRHTRP----GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 572 (1064)
Q Consensus 497 ~~~~tLIV~P~SLl~QW~~Ei~k~~~~----~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~ 572 (1064)
.++++|||||.+++.||.+||++|.+. ..+.|..+...++ ...+......+..+..|.|+.|++++........
T Consensus 727 g~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr--~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~v 804 (1567)
T KOG1015|consen 727 GFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKR--PEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNV 804 (1567)
T ss_pred CCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccC--hHHHHHHHHHHHhcCCEEEEehHHHHHHhcccch
Confidence 357999999999999999999999972 1344444443332 1122233445556778999999999986532111
Q ss_pred CcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccC
Q 001510 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1064)
Q Consensus 573 ~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1064)
+++. ++ ......|..-..|+||+||||.|||..|.+++++..+++++||+|||||+||||.|+|.+++|+.
T Consensus 805 ---k~rk-~k-----e~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVK 875 (1567)
T KOG1015|consen 805 ---KSRK-LK-----EIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVK 875 (1567)
T ss_pred ---hhhH-HH-----HHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcc
Confidence 1111 00 01123577778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhhcCCCCCCCh------------hhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHH
Q 001510 653 SSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 720 (1064)
Q Consensus 653 p~~f~~~~~F~~~~~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr 720 (1064)
|+.+|+...|..+|.+||++|.. ....-|+.+|..++-|+--..+... ||||+++|+.|.||+.|.
T Consensus 876 e~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--LPPK~eyVi~vrltelQ~ 953 (1567)
T KOG1015|consen 876 ENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--LPPKHEYVIAVRLTELQC 953 (1567)
T ss_pred cccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--CCCceeEEEEEeccHHHH
Confidence 99999999999999999999753 2335688999999999988877665 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCC----------
Q 001510 721 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS---------- 790 (1064)
Q Consensus 721 ~lY~~~~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~---------- 790 (1064)
.+|+.+++... ..+ .+..++ +.-...+|+....|++|.+||....
T Consensus 954 ~LYq~yL~h~~-----------------~~G----~d~eg~----~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR 1008 (1567)
T KOG1015|consen 954 KLYQYYLDHLT-----------------GVG----NDSEGG----RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKR 1008 (1567)
T ss_pred HHHHHHHhhcc-----------------ccC----Cccccc----cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcc
Confidence 99998765210 001 111111 1124578999999999999997411
Q ss_pred ---c----ccc------------------------------ccc----------------------CC--------CCC-
Q 001510 791 ---S----GLR------------------------------SLQ----------------------QS--------PLS- 802 (1064)
Q Consensus 791 ---~----~~~------------------------------~l~----------------------~~--------~~t- 802 (1064)
. .+. +.. .+ +-+
T Consensus 1009 ~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~ 1088 (1567)
T KOG1015|consen 1009 YFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVS 1088 (1567)
T ss_pred cccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchH
Confidence 0 000 000 00 000
Q ss_pred --HH-------------------HHH-------------HHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHH
Q 001510 803 --MD-------------------EIL-------------MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL 848 (1064)
Q Consensus 803 --~e-------------------elL-------------~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~ 848 (1064)
+. +++ ..|+=.+...|++-+.++|+|||.+..|++|+..+..+...
T Consensus 1089 l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~ 1168 (1567)
T KOG1015|consen 1089 LKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSRE 1168 (1567)
T ss_pred HHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhccc
Confidence 00 000 11222344567777899999999999999999987765322
Q ss_pred HH----------------------H-----HHHHHHHHHhhccCCCCc--Ce-------------------eEEeccCcc
Q 001510 849 YK----------------------E-----AMAVVEEHSEDFRLDPLL--NI-------------------HLHHNLTEI 880 (1064)
Q Consensus 849 y~----------------------~-----~l~~~~e~~~~f~~D~~~--~l-------------------h~~~Nl~~~ 880 (1064)
-+ . .-..++..++.|+-.... +| +|+++- -|
T Consensus 1169 gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa-sW 1247 (1567)
T KOG1015|consen 1169 GKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA-SW 1247 (1567)
T ss_pred CccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec-cc
Confidence 11 1 123566666777533221 11 333433 59
Q ss_pred Ccchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHh
Q 001510 881 LPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENAR 919 (1064)
Q Consensus 881 np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~ 919 (1064)
||.-|.|++= ++|-||+|+|.+||||..||+||+|...|
T Consensus 1248 NPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQ 1287 (1567)
T KOG1015|consen 1248 NPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQ 1287 (1567)
T ss_pred CCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHH
Confidence 9999999999 99999999999999999999999987654
No 17
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=9.7e-47 Score=419.98 Aligned_cols=241 Identities=32% Similarity=0.513 Sum_probs=188.9
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
+++|||||++++.||..||.+|++++.+++++|.|..... .........++++||||+++.....
T Consensus 59 ~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~vvi~ty~~~~~~~~---------- 123 (299)
T PF00176_consen 59 KKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERR-----RLSKNQLPKYDVVITTYETLRKARK---------- 123 (299)
T ss_dssp S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHH-----HTTSSSCCCSSEEEEEHHHHH--TS----------
T ss_pred cceeEeeccchhhhhhhhhccccccccccccccccccccc-----cccccccccceeeeccccccccccc----------
Confidence 4699999999999999999999976689999999986111 1134556789999999999992110
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCc
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1064)
+.....+..++|++||+||||.+||..++.++++..|.+.++|+|||||++|++.|||+++.||.|+.+++
T Consensus 124 ---------~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~ 194 (299)
T PF00176_consen 124 ---------KKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSD 194 (299)
T ss_dssp ---------THTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSS
T ss_pred ---------cccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeecccccc
Confidence 00114577788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcCCCCCCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 001510 659 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 738 (1064)
Q Consensus 659 ~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~~ 738 (1064)
...|.+.+..+..........+|+.+++++|+||+++++. ..||++.+.++.|+||+.|+++|+.+.........
T Consensus 195 ~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~~--~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~--- 269 (299)
T PF00176_consen 195 RRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDVE--KELPPKIEHVINVELSPEQRELYNELLKEARENLK--- 269 (299)
T ss_dssp HHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGGC--TTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCT---
T ss_pred chhhhhhhhhhccccccccccccccccchhhhhhhccccc--ccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---
Confidence 8999988865533344567789999999999999999993 45999999999999999999999987654321110
Q ss_pred HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCC
Q 001510 739 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVG 789 (1064)
Q Consensus 739 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~ 789 (1064)
. .. .........++..+++|||+||||.|+
T Consensus 270 ---------~----------~~--~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 270 ---------Q----------SS--RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp ---------T-----------T----TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ---------h----------hc--ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 0 00 112345778999999999999999874
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=7.1e-41 Score=384.91 Aligned_cols=391 Identities=17% Similarity=0.228 Sum_probs=267.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCC---------CCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcc
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRP---------GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLS 568 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~---------~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~ 568 (1064)
++++|+|+|-+++.||..||..|.|+ ..+.|++.....+. +..+......+.....|+|+.|++++-..-
T Consensus 312 AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT-~~~Rakvi~~Wv~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 312 AKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKT-FDQRAKVIEQWVQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred cceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhh-HHHHHHHHHHHhccCCEEEehHHHHHHHHH
Confidence 57999999999999999999999984 35667776655443 222233344556678899999999986543
Q ss_pred cCCCCccc--------------chhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEec
Q 001510 569 HDSDRHEG--------------DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITG 634 (1064)
Q Consensus 569 ~~~~~~~~--------------~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTG 634 (1064)
........ +...-+.+.-|..+.+.|.+-..|+||+||+|+|||..+.++.+++.+++++|++|||
T Consensus 391 k~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTG 470 (1387)
T KOG1016|consen 391 KTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTG 470 (1387)
T ss_pred hcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEec
Confidence 21100000 0000011222344557788899999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHhhhhccCCCCCCccchhhhhhcCCCCCCCh------------hhHHHHHHHHhhhheeccccccccCCC
Q 001510 635 TPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1064)
Q Consensus 635 TPiqN~l~DL~sLL~FL~p~~f~~~~~F~~~~~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~~el~ 702 (1064)
-|+||+|-|+|.+++|++|.++|+...|...|.+||..|.- .....|+.++..|+-||+...+.. .
T Consensus 471 YPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~--~ 548 (1387)
T KOG1016|consen 471 YPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK--I 548 (1387)
T ss_pred cccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh--h
Confidence 99999999999999999999999999999999999998742 223568899999999999987744 4
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 001510 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1064)
Q Consensus 703 LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQi 782 (1064)
||.+.|+|+.|.+|..||++|+.+....+. ++... ..... +.|..+.-.-+|
T Consensus 549 LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r-----------~~~~~-------~~~~~----------NPLkAF~vCcKI 600 (1387)
T KOG1016|consen 549 LPEKKEYVILVRKSQIQRQLYRNFMLDAKR-----------EIAAN-------NDAVF----------NPLKAFSVCCKI 600 (1387)
T ss_pred cccccceEEEEeHHHHHHHHHHHHHHHHHH-----------hhccc-------ccccc----------ChHHHHHHHHHh
Confidence 999999999999999999999987532111 11001 01111 123334444556
Q ss_pred cCCCCCCC---------------------ccccc-------cc------------------CC----------------C
Q 001510 783 CCHPQVGS---------------------SGLRS-------LQ------------------QS----------------P 800 (1064)
Q Consensus 783 C~HP~L~~---------------------~~~~~-------l~------------------~~----------------~ 800 (1064)
.|||++.- .+... .. +. +
T Consensus 601 WNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~ 680 (1387)
T KOG1016|consen 601 WNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEV 680 (1387)
T ss_pred cCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccc
Confidence 67776411 00000 00 00 0
Q ss_pred CCHHHHHHHHHHHH-----------------HHhhhhhcchHHHHHhHHHHHHHHHHhhhhh------------HHHHHH
Q 001510 801 LSMDEILMVLIGKT-----------------KIEGEEALRKLVMALNGLAGIALIEKNLSQA------------VSLYKE 851 (1064)
Q Consensus 801 ~t~eelL~~Ll~~~-----------------~~e~~e~lrkvlifsq~la~L~iIe~~l~~a------------~~~y~~ 851 (1064)
.+..+.-.+|..+- ..+....+.++|+|||-+..|++|+..+.+. ...|..
T Consensus 681 ~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~ 760 (1387)
T KOG1016|consen 681 EKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEK 760 (1387)
T ss_pred cchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhh
Confidence 00101112222221 1122233568999999999999998754321 111211
Q ss_pred ------H-----HHHHHHHHhhccCCCCcC-e--------eEEeccC----------ccCcchhhhhhh-hhccCCCCce
Q 001510 852 ------A-----MAVVEEHSEDFRLDPLLN-I--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPG 900 (1064)
Q Consensus 852 ------~-----l~~~~e~~~~f~~D~~~~-l--------h~~~Nl~----------~~np~~~~Qa~~-~~riGq~~~v 900 (1064)
. -..++..+++|+-.+-.. + ..+.||. -|||--+.||.. ++|-||+|+.
T Consensus 761 n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpc 840 (1387)
T KOG1016|consen 761 NRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPC 840 (1387)
T ss_pred ccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCce
Confidence 1 114566666766544221 1 2234443 599999999999 9999999999
Q ss_pred EEEEcccCCccccchhhHh
Q 001510 901 CSEKAFKIHSIETCDENAR 919 (1064)
Q Consensus 901 ~v~rl~~~~t~ee~~~~~~ 919 (1064)
.||||+.-+++|.+|.+.+
T Consensus 841 fvYRlVmD~~lEkkIydRQ 859 (1387)
T KOG1016|consen 841 FVYRLVMDNSLEKKIYDRQ 859 (1387)
T ss_pred eEEeehhhhhhHHHHHHHH
Confidence 9999999999999998765
No 19
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-39 Score=362.60 Aligned_cols=351 Identities=15% Similarity=0.157 Sum_probs=234.7
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
.|.|||||+|+...|.+++.+|+|. -..+.+..+.... .+.-.....|+|+||+.+....
T Consensus 242 wplliVcPAsvrftWa~al~r~lps-~~pi~vv~~~~D~--------~~~~~t~~~v~ivSye~ls~l~----------- 301 (689)
T KOG1000|consen 242 WPLLIVCPASVRFTWAKALNRFLPS-IHPIFVVDKSSDP--------LPDVCTSNTVAIVSYEQLSLLH----------- 301 (689)
T ss_pred CcEEEEecHHHhHHHHHHHHHhccc-ccceEEEecccCC--------ccccccCCeEEEEEHHHHHHHH-----------
Confidence 5899999999999999999999984 3446665554432 1111233459999999998753
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHh--ccCeEEEEeccCCCCChhhhHhhhhccCCCCC
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L--~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1064)
..|..-.|..||+||.|++|+..++.++++..+ .+.|.++|||||-..++.|||.++..+++..|
T Consensus 302 -------------~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlf 368 (689)
T KOG1000|consen 302 -------------DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLF 368 (689)
T ss_pred -------------HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhccccc
Confidence 357777799999999999999999999999886 58999999999999999999999999999999
Q ss_pred CccchhhhhhcCCCC------CCChhhHHHHHHHHh-hhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 001510 657 SISRWWIEVIRDPYE------NGDVGAMEFTHKFFK-EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHET 729 (1064)
Q Consensus 657 ~~~~~F~~~~~~pi~------~~~~~~~~~L~~lL~-~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~ 729 (1064)
.++..|...|++.-. ...-.++++|+.+|. .+|+||+|.||+.+ ||||...|+++. ...+-..-+++...
T Consensus 369 p~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q--LPpKrr~Vv~~~-~gr~da~~~~lv~~ 445 (689)
T KOG1000|consen 369 PNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ--LPPKRREVVYVS-GGRIDARMDDLVKA 445 (689)
T ss_pred ccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCccceEEEEEc-CCccchHHHHHHHH
Confidence 999999888876422 122345677777665 57999999999887 999966666554 33333333333322
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHH
Q 001510 730 CVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMV 809 (1064)
Q Consensus 730 ~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~ 809 (1064)
....... +... .+-...++.-++.. .....-+.+-
T Consensus 446 a~~~t~~-------~~~e----------------------~~~~~l~l~y~~tg----------------iaK~~av~ey 480 (689)
T KOG1000|consen 446 AADYTKV-------NSME----------------------RKHESLLLFYSLTG----------------IAKAAAVCEY 480 (689)
T ss_pred hhhcchh-------hhhh----------------------hhhHHHHHHHHHhc----------------ccccHHHHHH
Confidence 1110000 0000 00111111111110 0000111111
Q ss_pred HHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHH-HHH--H--HHHHHHHHHhhccCCCCcCe--------eEEec
Q 001510 810 LIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVS-LYK--E--AMAVVEEHSEDFRLDPLLNI--------HLHHN 876 (1064)
Q Consensus 810 Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~-~y~--~--~l~~~~e~~~~f~~D~~~~l--------h~~~N 876 (1064)
++.+-. -.++..+|+|+|..-..+|+-|+.++..... .-| + .-..++..+..|+.+.--.+ .++..
T Consensus 481 i~~~~~-l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 481 ILENYF-LPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred HHhCcc-cccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 111000 0233347999999999999999987765421 111 1 11245666777877764332 12222
Q ss_pred cC----------ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccc--hhhHhhhhhcccccCCC
Q 001510 877 LT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETC--DENARKCQRVSREENSD 931 (1064)
Q Consensus 877 l~----------~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~--~~~~~k~~~~~~~~~~~ 931 (1064)
+. .|||-+-.||.| +|||||+..|.||=|+.+||++|. .+-.+|=+.+++.+.++
T Consensus 560 ~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s 627 (689)
T KOG1000|consen 560 LTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSS 627 (689)
T ss_pred eeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCc
Confidence 22 699999999999 999999999999999999999994 44455556666665543
No 20
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=7.7e-38 Score=390.32 Aligned_cols=342 Identities=14% Similarity=0.155 Sum_probs=228.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.+++|||||++|+.||..|+.+++ .+.+.+|.+..-..... .....+..++++|+||++++++...
T Consensus 199 ~~rvLIVvP~sL~~QW~~El~~kF---~l~~~i~~~~~~~~~~~---~~~~pf~~~~~vI~S~~~l~~~~~~-------- 264 (956)
T PRK04914 199 AERVLILVPETLQHQWLVEMLRRF---NLRFSLFDEERYAEAQH---DADNPFETEQLVICSLDFLRRNKQR-------- 264 (956)
T ss_pred CCcEEEEcCHHHHHHHHHHHHHHh---CCCeEEEcCcchhhhcc---cccCccccCcEEEEEHHHhhhCHHH--------
Confidence 468999999999999999999888 57788887654221100 0113345689999999999874210
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCCh---HHHHHHHHHHh--ccCeEEEEeccCCCCChhhhHhhhhccC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN---AAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~---~Sk~~kal~~L--~a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1064)
...+....|++||+||||+++|. .|+.++.+..| ++.++++|||||+||++.|+|++|+||+
T Consensus 265 -------------~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLd 331 (956)
T PRK04914 265 -------------LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLD 331 (956)
T ss_pred -------------HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhC
Confidence 02366779999999999999953 46778888888 5789999999999999999999999999
Q ss_pred CCCCCccchhhhhhcC--CC-------CCCC---hhhHHHH-------------------------------HHH-----
Q 001510 653 SSPFSISRWWIEVIRD--PY-------ENGD---VGAMEFT-------------------------------HKF----- 684 (1064)
Q Consensus 653 p~~f~~~~~F~~~~~~--pi-------~~~~---~~~~~~L-------------------------------~~l----- 684 (1064)
|+.|+++..|.+.... |+ ..+. ......| ..+
T Consensus 332 P~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg 411 (956)
T PRK04914 332 PDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHG 411 (956)
T ss_pred CCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcC
Confidence 9999999999754321 11 0111 1111111 111
Q ss_pred HhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCccc
Q 001510 685 FKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 764 (1064)
Q Consensus 685 L~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~ 764 (1064)
..++|+|+++++|.. +|++..+.+.+++.+..+..+.... . ...... +
T Consensus 412 ~~rvm~RntR~~v~~---fp~R~~~~~~l~~~~~y~~~~~~~~---~-------~~~~~~-------------------l 459 (956)
T PRK04914 412 TGRVLFRNTRAAVKG---FPKRELHPIPLPLPEQYQTAIKVSL---E-------ARARDM-------------------L 459 (956)
T ss_pred cceEEEeccHHhhcC---CCcCceeEeecCCCHHHHHHHHHhH---H-------HHHHhh-------------------c
Confidence 126899999999864 8999999999999765433332100 0 000000 0
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhh
Q 001510 765 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ 844 (1064)
Q Consensus 765 ~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~ 844 (1064)
.. ..++.. +... ... . .....-+.|..++... . ..|++||++...+.+.|.+.+..
T Consensus 460 ~p---e~~~~~---~~~~--------~~~--~--~~d~Ki~~L~~~L~~~---~---~~KvLVF~~~~~t~~~L~~~L~~ 515 (956)
T PRK04914 460 YP---EQIYQE---FEDN--------ATW--W--NFDPRVEWLIDFLKSH---R---SEKVLVICAKAATALQLEQALRE 515 (956)
T ss_pred CH---HHHHHH---Hhhh--------hhc--c--ccCHHHHHHHHHHHhc---C---CCeEEEEeCcHHHHHHHHHHHhh
Confidence 00 011110 0000 000 0 0011123333444322 1 36999999999999999998843
Q ss_pred h----HHHHHH--HHHHHHHHHhhccCCC--C---------------cCe--eEEeccCccCcchhhhhhh-hhccCCCC
Q 001510 845 A----VSLYKE--AMAVVEEHSEDFRLDP--L---------------LNI--HLHHNLTEILPMVANCATE-LSQNEQHF 898 (1064)
Q Consensus 845 a----~~~y~~--~l~~~~e~~~~f~~D~--~---------------~~l--h~~~Nl~~~np~~~~Qa~~-~~riGq~~ 898 (1064)
. ...|.+ ....+++.++.|+.+. . +.. .++|++. |||+...|+++ +|||||++
T Consensus 516 ~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP-~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 516 REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP-FNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC-CCHHHHHHHhcccccCCCCc
Confidence 2 112332 3446677777787642 2 211 4556665 99999999999 99999999
Q ss_pred ceEEEEcccCCccccchhhHhhhhh
Q 001510 899 PGCSEKAFKIHSIETCDENARKCQR 923 (1064)
Q Consensus 899 ~v~v~rl~~~~t~ee~~~~~~k~~~ 923 (1064)
+|.||.++.++|++|.+.+.-+++.
T Consensus 595 ~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 595 DIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred eEEEEEccCCCCHHHHHHHHHhhhc
Confidence 9999999999999999999887744
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=387.22 Aligned_cols=313 Identities=20% Similarity=0.337 Sum_probs=247.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc-----------------cchhhhhcCCCEEEEeh
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS-----------------IMDISELVGADIVLTTY 560 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~-----------------~~~~~~l~~~DVVITTY 560 (1064)
.+|.||++|.+.+.+|..|+..|++ .+.+..|+|..+.+...+. ........++.+.+++|
T Consensus 345 ~~P~Lv~ap~sT~~nwe~e~~~wap--~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~ 422 (696)
T KOG0383|consen 345 PGPPLVVAPLSTIVNWEREFELWAP--SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSY 422 (696)
T ss_pred CCCceeeccCccccCCCCchhccCC--CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCch
Confidence 4799999999999999999999998 8999999998764321000 00112335677888888
Q ss_pred HHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCC
Q 001510 561 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRK 640 (1064)
Q Consensus 561 etL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~ 640 (1064)
++...+. +.+..+.|..+|+||+|++||..|+.++.+......++++|||||.||+
T Consensus 423 ~~~~~~~------------------------~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 423 ETIEIDQ------------------------SILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred hhcccCH------------------------HHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhh
Confidence 8877654 5799999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhccCCCCCCccchhhhhhcCCCCCCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHH
Q 001510 641 LDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 720 (1064)
Q Consensus 641 l~DL~sLL~FL~p~~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr 720 (1064)
+.+|+++|+||.++.|.+..+|.+.|.+- ...+.++.|+.++.+.|+||.|.||++. +|+|++.++.+.|++.|+
T Consensus 479 ~~el~~ll~flt~~~~~~~~~f~e~~~d~---~~~~~~~~l~~l~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~ 553 (696)
T KOG0383|consen 479 LEELFNLLNFLTPGRFNSLEWFLEEFHDI---SCEEQIKKLHLLLCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQK 553 (696)
T ss_pred hHHhhhcccccCcccccchhhhhhhcchh---hHHHHHHhhccccCchhhhhhhhhhccC--CCccceeEEEEecCHHHH
Confidence 99999999999999999999999988652 3456788899999999999999999876 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCC
Q 001510 721 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP 800 (1064)
Q Consensus 721 ~lY~~~~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~ 800 (1064)
++|+.++.+...-... ......+++.+|.|||+||||++... ...+....
T Consensus 554 ~~yk~~~t~n~~~l~~-----------------------------~~~~~s~~n~~mel~K~~~hpy~~~~-~e~~~~~~ 603 (696)
T KOG0383|consen 554 KYYKKILTRNWQGLLA-----------------------------GVHQYSLLNIVMELRKQCNHPYLSPL-EEPLEENG 603 (696)
T ss_pred HHHHHHHcCChHHHhh-----------------------------cchhHHHHHHHHHHHHhhcCcccCcc-ccccccch
Confidence 9999876542211100 11235688999999999999999776 22221111
Q ss_pred ----------CCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHHHHHH-----HHHHHHhhccC
Q 001510 801 ----------LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRL 865 (1064)
Q Consensus 801 ----------~t~eelL~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~~~l~-----~~~e~~~~f~~ 865 (1064)
+.+-.+|..|+.+++.+| |+|++|+|++.||||+++.+..+. .|....+ .+++.++.|+.
T Consensus 604 ~~~~~~l~k~~~k~~~l~~~~~~l~~~g----hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~ 678 (696)
T KOG0383|consen 604 EYLGSALIKASGKLTLLLKMLKKLKSSG----HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNA 678 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCC
Confidence 122335566666665555 999999999999999999998888 7877655 56667777774
Q ss_pred -CCCcCeeEEec
Q 001510 866 -DPLLNIHLHHN 876 (1064)
Q Consensus 866 -D~~~~lh~~~N 876 (1064)
+.-+.+.++-|
T Consensus 679 ~~~~~~cfllst 690 (696)
T KOG0383|consen 679 PGSNQFCFLLST 690 (696)
T ss_pred CCccceEEEeec
Confidence 33455555544
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1.2e-22 Score=247.28 Aligned_cols=304 Identities=15% Similarity=0.189 Sum_probs=181.1
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
++||||||.+. +.||.+||.+|+.-....+..|.|..+.. .....+|+||||+++......... .
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~----------~~~~~~VvVtTYq~l~~~~~r~~~----~ 364 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER----------FHGEAGVVVSTYSMVAHTGKRSYE----S 364 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc----------cccCCcEEEEEHHHhhcccccchh----h
Confidence 57999999875 88999999999743346677888864431 123578999999999865321000 0
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhcc-CCCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL-KSSPF 656 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL-~p~~f 656 (1064)
. .....|....|++||+||+|.+.+ ....+.+..+.+.+||+|||||++++ +.+..+.|| +|..|
T Consensus 365 ~----------~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vy 430 (732)
T TIGR00603 365 E----------KVMEWLTNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLY 430 (732)
T ss_pred h----------HHHHHhccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeee
Confidence 0 001234556899999999999964 34455677789999999999999875 344444444 22221
Q ss_pred CccchhhhhhcCCCCCCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 001510 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1064)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~ 736 (1064)
. ..|.+.+ ..--|.+-....|+|+|++.+..-|-....
T Consensus 431 e--~~~~eLi--------------------------------~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~-------- 468 (732)
T TIGR00603 431 E--ANWMELQ--------------------------------KKGFIANVQCAEVWCPMTPEFYREYLRENS-------- 468 (732)
T ss_pred e--cCHHHHH--------------------------------hCCccccceEEEEEecCCHHHHHHHHHhcc--------
Confidence 1 1111111 111155666677999999875433321000
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHH
Q 001510 737 VIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 816 (1064)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~ 816 (1064)
+ ....+ +..+|. .-+.+..|+..-.
T Consensus 469 -----------------------------~--~k~~l--------~~~np~---------------K~~~~~~Li~~he- 493 (732)
T TIGR00603 469 -----------------------------R--KRMLL--------YVMNPN---------------KFRACQFLIRFHE- 493 (732)
T ss_pred -----------------------------h--hhhHH--------hhhChH---------------HHHHHHHHHHHHh-
Confidence 0 00000 111221 1133444543321
Q ss_pred hhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccCCC-CcCe---------------eEEeccC--
Q 001510 817 EGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDP-LLNI---------------HLHHNLT-- 878 (1064)
Q Consensus 817 e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~~~l~~~~e~~~~f~~D~-~~~l---------------h~~~Nl~-- 878 (1064)
...++++||++.+..+..+...+.............|+...++|+... +..| .++.++.
T Consensus 494 ---~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~ 570 (732)
T TIGR00603 494 ---QRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 570 (732)
T ss_pred ---hcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCC
Confidence 245799999999999888888775433333333457777888887542 2222 2223322
Q ss_pred ccCcchhhhhhh-hhccCCCC-----ceEEEEcccCCccccchhhHhhhhhcccccCCCC
Q 001510 879 EILPMVANCATE-LSQNEQHF-----PGCSEKAFKIHSIETCDENARKCQRVSREENSDF 932 (1064)
Q Consensus 879 ~~np~~~~Qa~~-~~riGq~~-----~v~v~rl~~~~t~ee~~~~~~k~~~~~~~~~~~~ 932 (1064)
.-++....|... +.|.|..+ +...|.|++.+|.|+. -.+|||+..-++.-.+
T Consensus 571 ~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~--~s~~Rq~fl~~qGY~~ 628 (732)
T TIGR00603 571 YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY--YSTKRQRFLVDQGYSF 628 (732)
T ss_pred CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH--HHHHHHHHHHHCCCee
Confidence 125555555555 55555433 3677999999999976 4567777776655444
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.76 E-value=2.4e-17 Score=208.29 Aligned_cols=366 Identities=11% Similarity=0.034 Sum_probs=192.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+++|||||. .++.||.+++.+++.....++.+++|...... ......+++|+++|++.+..++..
T Consensus 59 ~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~------r~~~~~~~~iiv~T~~~l~~~l~~-------- 124 (773)
T PRK13766 59 GKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEK------RAELWEKAKVIVATPQVIENDLIA-------- 124 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHH------HHHHHhCCCEEEECHHHHHHHHHc--------
Confidence 689999998 78899999999987533458888888643210 123345789999999999887521
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHh---ccCeEEEEeccCCCCChhhhHhhhhccCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~ 654 (1064)
..+..-.|+.||+||||++.+..+..+-+-.-. +..+.++|||||.++ ...+..++.-|...
T Consensus 125 --------------~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~ 189 (773)
T PRK13766 125 --------------GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIE 189 (773)
T ss_pred --------------CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCce
Confidence 112334689999999999987654433222222 345689999999876 56666666665543
Q ss_pred CCCccchhhhhhcCCCC--------CCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHH
Q 001510 655 PFSISRWWIEVIRDPYE--------NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1064)
Q Consensus 655 ~f~~~~~F~~~~~~pi~--------~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~ 726 (1064)
.......|...+..-+. -.-+..+..++..+..++-++.+...... .+++....+....+...++.++..+
T Consensus 190 ~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l 268 (773)
T PRK13766 190 HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG-VIVSISPDVSKKELLGLQKKLQQEI 268 (773)
T ss_pred EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCCcCHHHHHHHHHHHHHHh
Confidence 32222222111111000 01234566778888888887776543211 1233322222233333333333332
Q ss_pred HHHHHH--HHHHHH---HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCc----------
Q 001510 727 HETCVG--YAREVI---QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS---------- 791 (1064)
Q Consensus 727 ~~~~~~--~a~~~~---~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~---------- 791 (1064)
...-.. .+...+ ..+..... .+.......+...+.+|+..+.++.-...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~ 332 (773)
T PRK13766 269 ANDDSEGYEAISILAEAMKLRHAVE----------------LLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRF 332 (773)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHH----------------HHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHH
Confidence 110000 000000 00000000 00000011222223333322221110000
Q ss_pred -----ccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHH---HHH----------HH
Q 001510 792 -----GLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKE----------AM 853 (1064)
Q Consensus 792 -----~~~~l~~~~~t~eelL~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~---y~~----------~l 853 (1064)
..... ......-+.|..++.....+ ....+++||+++....+.|.+.+...... +.+ ..
T Consensus 333 ~~~~~~~~~~-~~~~pK~~~L~~il~~~~~~--~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 333 RKAVRKAKEL-DIEHPKLEKLREIVKEQLGK--NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHhc-ccCChHHHHHHHHHHHHHhc--CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 00000 01112234455555443321 24479999999999999999877432110 000 01
Q ss_pred HHHHHHHhhccCCCC-----------------cCeeEEeccCccCcchhhhhhhhhccCCCCceEEEEcccCCccccchh
Q 001510 854 AVVEEHSEDFRLDPL-----------------LNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1064)
Q Consensus 854 ~~~~e~~~~f~~D~~-----------------~~lh~~~Nl~~~np~~~~Qa~~~~riGq~~~v~v~rl~~~~t~ee~~~ 916 (1064)
..+.+.+++|+.+.. ..+.++|+.. |++....|. ++|+|+..++.+|.|++++|.||...
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~-~s~~r~iQR--~GR~gR~~~~~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPV-PSEIRSIQR--KGRTGRQEEGRVVVLIAKGTRDEAYY 486 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCC-CCHHHHHHH--hcccCcCCCCEEEEEEeCCChHHHHH
Confidence 233344455654432 2235566654 888766563 78889988899999999999999654
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.39 E-value=4.1e-11 Score=142.17 Aligned_cols=297 Identities=16% Similarity=0.078 Sum_probs=170.2
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
.+|||||.. |+.||.+.+.+++... -.+..|.|..+.. ...+|+++||+++.+....
T Consensus 82 ~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~------------~~~~i~vat~qtl~~~~~l--------- 139 (442)
T COG1061 82 STLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKEL------------EPAKVTVATVQTLARRQLL--------- 139 (442)
T ss_pred CEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceecc------------CCCcEEEEEhHHHhhhhhh---------
Confidence 499999985 6789999999988521 2456666654321 1157999999999885200
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCe-EEEEeccCCCCChhhhHhhhhccCCCCCC
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKH-RWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~-RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1064)
..+..-+|+.||+||+|++.....+ +.+..+.+.+ +++|||||....-..+.-++.++
T Consensus 140 -------------~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~------ 198 (442)
T COG1061 140 -------------DEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLI------ 198 (442)
T ss_pred -------------hhhcccccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhc------
Confidence 1233347999999999999765433 2334455555 99999999854323333333322
Q ss_pred ccchhhhhhcCCCCCCChhhHHHHHHHHhhhheeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 001510 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1064)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~ 737 (1064)
.+.+......+..++--|.|.....+++.++..+...|...........+.
T Consensus 199 ----------------------------g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~- 249 (442)
T COG1061 199 ----------------------------GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA- 249 (442)
T ss_pred ----------------------------CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh-
Confidence 233333333333333348889999999999999999998764332111000
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHh
Q 001510 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIE 817 (1064)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e 817 (1064)
+ .. ....-..+.+..+- . .....+..++....
T Consensus 250 ----------~--------------------~~--~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~-- 281 (442)
T COG1061 250 ----------R--------------------GT--LRAENEARRIAIAS-------------E-RKIAAVRGLLLKHA-- 281 (442)
T ss_pred ----------h--------------------hh--hhHHHHHHHHhhcc-------------H-HHHHHHHHHHHHhc--
Confidence 0 00 00000011111100 0 01112222221111
Q ss_pred hhhhcchHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHhhccCCCCcCeeE------EeccC---------
Q 001510 818 GEEALRKLVMALNGLAGIALIEKNLSQA----VSLYKEAMAVVEEHSEDFRLDPLLNIHL------HHNLT--------- 878 (1064)
Q Consensus 818 ~~e~lrkvlifsq~la~L~iIe~~l~~a----~~~y~~~l~~~~e~~~~f~~D~~~~lh~------~~Nl~--------- 878 (1064)
...++++|.........|...+... ......-...+++..+.|+...+.-|.. +.+.-
T Consensus 282 ---~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 ---RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred ---CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC
Confidence 2368889988888888888877655 4444445556777778887755433322 12221
Q ss_pred -ccCcchhhhhhh-hhc-cCCCCc--eEEEEcccCCccccchhhHh
Q 001510 879 -EILPMVANCATE-LSQ-NEQHFP--GCSEKAFKIHSIETCDENAR 919 (1064)
Q Consensus 879 -~~np~~~~Qa~~-~~r-iGq~~~--v~v~rl~~~~t~ee~~~~~~ 919 (1064)
.=.+....|... ..| ...+.. +..|-++...+.++.+....
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 404 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRR 404 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhh
Confidence 223445667777 888 444444 66667777777766644433
No 25
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.36 E-value=5.9e-12 Score=129.78 Aligned_cols=123 Identities=24% Similarity=0.281 Sum_probs=72.7
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCC---Ccc-----cccccccchhhhhcCCCEEEEehHHHhhhcccC
Q 001510 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGA---RNS-----SLSDTSIMDISELVGADIVLTTYDVLKEDLSHD 570 (1064)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~---~~~-----~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~ 570 (1064)
++|||||. +|+.||.++|..+.. .......... ... ................++++++|+.+.......
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~ 129 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGS--EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEE 129 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHST--TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH-
T ss_pred ceeEecCHHHHHHHHHHHHHHhhh--hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccc
Confidence 79999998 788999999988775 2222211110 000 000001112233567889999999998865321
Q ss_pred CCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCC
Q 001510 571 SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1064)
Q Consensus 571 ~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPi 637 (1064)
....... .....+..-.+++||+||||+..+... ++.+....+.+++.|||||.
T Consensus 130 ~~~~~~~-----------~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 130 KKIDESA-----------RRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp -------------------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred cccccch-----------hhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 1000000 011234556788999999999865443 56666688999999999995
No 26
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.34 E-value=7.4e-12 Score=129.14 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=76.0
Q ss_pred CcEEEEeC-CchHHHHHHHHHhcCCCCC-CeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCP-APILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~Ei~k~~~~~~-L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
+++||++| ..+..||..++.++.+... ....++.+..... .........++++++||+.+.......
T Consensus 55 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~t~~~l~~~~~~~------ 123 (201)
T smart00487 55 KRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKRE-----QLRKLESGKTDILVTTPGRLLDLLEND------ 123 (201)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHH-----HHHHHhcCCCCEEEeChHHHHHHHHcC------
Confidence 57999999 5678999999999886322 4555666643211 001111122399999999998865421
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCC-hHHHHH-HHHHHh-ccCeEEEEeccCCCC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-NAAAAT-EMALRL-YAKHRWCITGTPIQR 639 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN-~~Sk~~-kal~~L-~a~~RwlLTGTPiqN 639 (1064)
.+....|+++|+||+|++.+ ...... ..+..+ ...+++++||||..+
T Consensus 124 ----------------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 124 ----------------LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred ----------------CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 13445688999999999986 333333 333444 578899999999644
No 27
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.33 E-value=7.9e-12 Score=121.38 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=77.4
Q ss_pred CcEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+||+||...+ .||.+++.++... .+.+.++++....... ........+|+++||+.+.......
T Consensus 31 ~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~i~i~t~~~~~~~~~~~------- 97 (144)
T cd00046 31 GQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQ-----EKLLSGKTDIVVGTPGRLLDELERL------- 97 (144)
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHH-----HHHhcCCCCEEEECcHHHHHHHHcC-------
Confidence 689999999765 5667777777643 4777777776443210 1223567899999999988765321
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHH---HHHHHhccCeEEEEeccC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT---EMALRLYAKHRWCITGTP 636 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~---kal~~L~a~~RwlLTGTP 636 (1064)
.+....|++||+||+|.+.+...... ...........+++||||
T Consensus 98 ---------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 98 ---------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ---------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 13345799999999999988765443 333445778899999999
No 28
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.22 E-value=1.4e-10 Score=139.89 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=69.9
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeE-EEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V-~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
.++||+||. .|+.||.+++.+|...+...+ .++.|.... ...+|+|+||+.+.+...
T Consensus 159 ~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------------~~~~I~VaT~qsl~~~~~-------- 217 (501)
T PHA02558 159 GKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------------TDAPIVVSTWQSAVKQPK-------- 217 (501)
T ss_pred CeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------------CCCCEEEeeHHHHhhchh--------
Confidence 379999998 688999999999863222233 445554321 347899999999865311
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHh-ccCeEEEEeccCCC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQ 638 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPiq 638 (1064)
..+ -.|+.||+||||++.... ....+..+ ++.++++|||||..
T Consensus 218 ---------------~~~--~~~~~iIvDEaH~~~~~~--~~~il~~~~~~~~~lGLTATp~~ 261 (501)
T PHA02558 218 ---------------EWF--DQFGMVIVDECHLFTGKS--LTSIITKLDNCKFKFGLTGSLRD 261 (501)
T ss_pred ---------------hhc--cccCEEEEEchhcccchh--HHHHHHhhhccceEEEEeccCCC
Confidence 011 257899999999997532 34455566 57899999999954
No 29
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.18 E-value=4e-11 Score=136.15 Aligned_cols=128 Identities=21% Similarity=0.341 Sum_probs=90.3
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+||+|-+++ +.||+.+|..|..-..-.++.|....+.++ ...++||||||.++..--... ...
T Consensus 346 K~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~----------~~~~gvvvsTYsMva~t~kRS----~ea 411 (776)
T KOG1123|consen 346 KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERF----------PSGAGVVVTTYSMVAYTGKRS----HEA 411 (776)
T ss_pred ccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccC----------CCCCcEEEEeeehhhhccccc----HHH
Confidence 67899999887 899999999998655556788887665532 245789999999987532110 001
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~ 654 (1064)
.++...|....|..+||||.|.+ +.....+.+.-+.+..++.||+|-+.. +|=..=|+||-.+
T Consensus 412 ----------ek~m~~l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRE--DdKI~DLNFLIGP 474 (776)
T KOG1123|consen 412 ----------EKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRE--DDKITDLNFLIGP 474 (776)
T ss_pred ----------HHHHHHHhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeec--cccccccceeecc
Confidence 11224678889999999999998 444445555667899999999998864 2333335666433
No 30
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.98 E-value=2.9e-09 Score=137.76 Aligned_cols=117 Identities=14% Similarity=0.059 Sum_probs=67.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeE-EEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V-~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
+++|++||. .|+.||.++|..+..+....+ .+|....-. ....-....|+|+||.++.+........
T Consensus 464 ~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~--------~~~~~~~~~I~iaTiQtl~~~~~~~~~~--- 532 (1123)
T PRK11448 464 RRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLE--------DKFPEDETKVHVATVQGMVKRILYSDDP--- 532 (1123)
T ss_pred CeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhh--------hhcccCCCCEEEEEHHHHHHhhhccccc---
Confidence 589999996 588999999998753222111 122111000 1111235789999999997754211000
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH----------------HHHHHHHHHhccCeEEEEeccCCCCC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA----------------AAATEMALRLYAKHRWCITGTPIQRK 640 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~----------------Sk~~kal~~L~a~~RwlLTGTPiqN~ 640 (1064)
. ..+.--.|++||+||||+.-... ...++.+....-..+++|||||..+.
T Consensus 533 ----------~----~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t 598 (1123)
T PRK11448 533 ----------M----DKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT 598 (1123)
T ss_pred ----------c----ccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch
Confidence 0 01223468899999999953100 12333333322247899999998654
No 31
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.1e-07 Score=110.03 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=89.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+..|+++|+ .|+.|=..-+.+.+.-+.-.+..+.|.-.... ....+.+..|++.|-.++.+|+..
T Consensus 59 ~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~------R~~~w~~~kVfvaTPQvveNDl~~-------- 124 (542)
T COG1111 59 GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEE------REELWAKKKVFVATPQVVENDLKA-------- 124 (542)
T ss_pred CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHH------HHHHHhhCCEEEeccHHHHhHHhc--------
Confidence 479999996 79999999999998655677889999754311 345567889999999999999742
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhccC-eEEEEeccCCCCChhhhHhhhhccCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAK-HRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a~-~RwlLTGTPiqN~l~DL~sLL~FL~p~ 654 (1064)
..+-.-.+.++|+||||+.-... ...++...+-... +.++||+||= ++.+.+...++=|+.+
T Consensus 125 --------------Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe 189 (542)
T COG1111 125 --------------GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIE 189 (542)
T ss_pred --------------CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcc
Confidence 12344467899999999964433 3333333333333 6889999995 3456666666666654
Q ss_pred C
Q 001510 655 P 655 (1064)
Q Consensus 655 ~ 655 (1064)
.
T Consensus 190 ~ 190 (542)
T COG1111 190 K 190 (542)
T ss_pred e
Confidence 3
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.80 E-value=6.4e-08 Score=102.42 Aligned_cols=111 Identities=21% Similarity=0.177 Sum_probs=75.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh-cCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
..+|||||. .++.|+...+..+.....+++..++|...... ..... ...+|+|+|.+.+...+...
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~iiv~T~~~l~~~l~~~------ 137 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDK------QIRKLKRGPHIVVATPGRLLDLLERG------ 137 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEEChHHHHHHHHcC------
Confidence 479999997 57889999999987656788888888654321 11222 37899999999887654321
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH-HHHH-HHHHHhc-cCeEEEEeccCC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAAT-EMALRLY-AKHRWCITGTPI 637 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~-kal~~L~-a~~RwlLTGTPi 637 (1064)
.+..-.++++|+||+|.+.+.. .... ..+..+. ....+++|+||-
T Consensus 138 ----------------~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 138 ----------------KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ----------------CCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 1122346789999999976543 2222 2333444 466899999987
No 33
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.71 E-value=6.1e-08 Score=120.77 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=64.6
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.++|||||. .|..||.++|..+... .. .+..... .......-.+..|+|||+.+|.+.....
T Consensus 294 ~~vl~lvdR~~L~~Q~~~~f~~~~~~-~~-----~~~~s~~----~L~~~l~~~~~~iivtTiQk~~~~~~~~------- 356 (667)
T TIGR00348 294 PKVFFVVDRRELDYQLMKEFQSLQKD-CA-----ERIESIA----ELKRLLEKDDGGIIITTIQKFDKKLKEE------- 356 (667)
T ss_pred CeEEEEECcHHHHHHHHHHHHhhCCC-CC-----cccCCHH----HHHHHHhCCCCCEEEEEhHHhhhhHhhh-------
Confidence 579999997 5789999999998641 11 1111000 0000011124679999999998632110
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHH-HHhccCeEEEEeccCCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLYAKHRWCITGTPIQR 639 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal-~~L~a~~RwlLTGTPiqN 639 (1064)
...+ .......+||+||||+.-.. ...+.+ ..++...++++||||+..
T Consensus 357 ------~~~~------~~~~~~~lvIvDEaHrs~~~--~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 357 ------EEKF------PVDRKEVVVIFDEAHRSQYG--ELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred ------hhcc------CCCCCCEEEEEEcCccccch--HHHHHHHhhCCCCcEEEEeCCCccc
Confidence 0000 01111238999999986432 233444 356778999999999864
No 34
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.63 E-value=2.1e-07 Score=115.50 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=74.6
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
..+||++|... ..||.+++.+++++-++++.+++|........ .........+.+|||.|...+.....
T Consensus 285 ~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~-~~~~~i~~g~~~IiVgT~~ll~~~~~--------- 354 (630)
T TIGR00643 285 YQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRK-ELLETIASGQIHLVVGTHALIQEKVE--------- 354 (630)
T ss_pred CcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHH-HHHHHHhCCCCCEEEecHHHHhcccc---------
Confidence 36899999865 58999999999875468999999875432100 00111122467999999988764321
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhc---cCeEEEEeccCCCCCh
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY---AKHRWCITGTPIQRKL 641 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~---a~~RwlLTGTPiqN~l 641 (1064)
+ -...+||+||+|++.- .+......... ..+.+++|+||+...+
T Consensus 355 ----------------~--~~l~lvVIDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 355 ----------------F--KRLALVIIDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred ----------------c--cccceEEEechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHH
Confidence 2 2356899999999742 22222222333 5679999999987644
No 35
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.59 E-value=2.8e-07 Score=94.10 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=78.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-hcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
+.+||+||. .++.|=.+++.+++....+++..++|....... .... ....+|+|+|++.|........
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ilv~T~~~l~~~~~~~~----- 114 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISED-----QREVLSNQADILVTTPEQLLDLISNGK----- 114 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHH-----HHHHHHTTSSEEEEEHHHHHHHHHTTS-----
T ss_pred ceEEEEeeccccccccccccccccccccccccccccccccccc-----ccccccccccccccCcchhhccccccc-----
Confidence 479999997 578899999999987546788888775432100 1122 3469999999999987654200
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCCh-HHH-HHHHHHHh---ccCeEEEEeccCCCCChhhh
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAA-ATEMALRL---YAKHRWCITGTPIQRKLDDL 644 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~-~Sk-~~kal~~L---~a~~RwlLTGTPiqN~l~DL 644 (1064)
..+ ....+||+||+|.+-.. ... ....+..+ ...+.+++|+||- .++++|
T Consensus 115 ---------------~~~--~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~~ 169 (169)
T PF00270_consen 115 ---------------INI--SRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEKL 169 (169)
T ss_dssp ---------------STG--TTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHHH
T ss_pred ---------------ccc--ccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhhC
Confidence 012 23688999999998662 222 33333333 2467999999998 655543
No 36
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.54 E-value=1.1e-06 Score=97.54 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=89.7
Q ss_pred CCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhccccc-ceEEeccccccCChHH------HHHHHHHHh
Q 001510 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFW-WRICLDEAQMVESNAA------AATEMALRL 624 (1064)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w-~rVIlDEAH~IKN~~S------k~~kal~~L 624 (1064)
+.+|+.+||.+|......... . ..| ...+-.-+. -.| .+||+||+|..||..+ ++..++..|
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~---~---~sR----l~ql~~W~g-~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~L 204 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGK---Y---RSR----LDQLVDWCG-EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLEL 204 (303)
T ss_pred CCCccchhHHHHHhHHhccCC---c---cch----HHHHHHHHh-cCCCceEEeccchhcCCCCccCccccHHHHHHHHH
Confidence 467999999999987431100 0 000 000000111 122 3789999999999764 566666655
Q ss_pred ----ccCeEEEEeccCCCCChhhhHhhhhccCCC------CCCccchhhhhhcCCCCCCChhhHHHHHHHHh--hhheec
Q 001510 625 ----YAKHRWCITGTPIQRKLDDLYGLLRFLKSS------PFSISRWWIEVIRDPYENGDVGAMEFTHKFFK--EIMCRS 692 (1064)
Q Consensus 625 ----~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~------~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~--~~mLRR 692 (1064)
+.-+.+-+|+|.... +..| --.-+.+ +|.+...|.+.+ +++...+++.+..-|+ ..+++|
T Consensus 205 Q~~LP~ARvvY~SATgase-p~Nm---aYm~RLGLWG~gtpf~~~~~f~~a~----~~gGv~amE~vA~dlKa~G~yiaR 276 (303)
T PF13872_consen 205 QNRLPNARVVYASATGASE-PRNM---AYMSRLGLWGPGTPFPDFDDFLEAM----EKGGVGAMEMVAMDLKARGMYIAR 276 (303)
T ss_pred HHhCCCCcEEEecccccCC-Ccee---eeeeeccccCCCCCCCCHHHHHHHH----HhcCchHHHHHHHHHHhcchheee
Confidence 334577899998743 3333 2222333 344555555444 3456666666665544 367777
Q ss_pred cccccccCCCCCCCeEEEEEecCCHHHHHHHHH
Q 001510 693 SKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 725 (1064)
Q Consensus 693 tK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~ 725 (1064)
.. ..-.-...++.+++|+.|.++|+.
T Consensus 277 ~L-------Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 277 QL-------SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred ec-------ccCCceEEEEEecCCHHHHHHhcC
Confidence 54 366677889999999999999984
No 37
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.42 E-value=1.1e-06 Score=109.87 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=73.1
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
.+||++|.. |..|..+.+.+++++-++++.+++|........ ........+..+|||+|...+...+.
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~-~~~~~l~~g~~~IvVgT~~ll~~~v~---------- 380 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERR-EILEAIASGEADIVIGTHALIQDDVE---------- 380 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHH-HHHHHHhCCCCCEEEchHHHhcccch----------
Confidence 689999986 557999999999875458999999975421100 00011122468999999988754321
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHh-ccCeEEEEeccCCCCCh
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRKL 641 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPiqN~l 641 (1064)
+. +...||+||+|++.- .....+... ...+.+++|+||+...+
T Consensus 381 ---------------~~--~l~lvVIDE~Hrfg~---~qr~~l~~~~~~~~iL~~SATp~prtl 424 (681)
T PRK10917 381 ---------------FH--NLGLVIIDEQHRFGV---EQRLALREKGENPHVLVMTATPIPRTL 424 (681)
T ss_pred ---------------hc--ccceEEEechhhhhH---HHHHHHHhcCCCCCEEEEeCCCCHHHH
Confidence 22 346799999999732 222333332 24678999999987543
No 38
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.38 E-value=1.2e-06 Score=106.59 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=69.4
Q ss_pred CcEEEEeC-CchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+++|.++- .+|+.|=..++..|.|.++.... ..+.. ...++.|.|.||.++........+
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~-i~~~~-------------~~~s~~i~lsTyqt~~~~~~~~~~----- 276 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFLPFGTKMNK-IEDKK-------------GDTSSEIYLSTYQTMTGRIEQKED----- 276 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhCCCccceee-eeccc-------------CCcceeEEEeehHHHHhhhhcccc-----
Confidence 67888886 57889999999999984432222 22211 112688999999999886643110
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1064)
...++..-+||+||+||||+= ..+..+.+...-...+.+||+||-.
T Consensus 277 ------------~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 277 ------------EYRRFGPGFFDLIVIDEAHRG---IYSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred ------------ccccCCCCceeEEEechhhhh---HHhhhHHHHHHHHHHHHhhccCccc
Confidence 112455678999999999982 1223334444344456677999977
No 39
>PRK01172 ski2-like helicase; Provisional
Probab=98.34 E-value=5.4e-06 Score=104.07 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=72.0
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+++|+|. +|..|+.+++.++.. -+.++..+.|.... ....+..+||+|+|++.+..-..+.
T Consensus 66 ~k~v~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~--------~~~~~~~~dIiv~Tpek~~~l~~~~------- 129 (674)
T PRK01172 66 LKSIYIVPLRSLAMEKYEELSRLRS-LGMRVKISIGDYDD--------PPDFIKRYDVVILTSEKADSLIHHD------- 129 (674)
T ss_pred CcEEEEechHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--------ChhhhccCCEEEECHHHHHHHHhCC-------
Confidence 467899997 677899999988653 25778777776432 2233467899999999876543210
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH-HHHHHH-HHH---hc-cCeEEEEeccCCCCChhhhH
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEM-ALR---LY-AKHRWCITGTPIQRKLDDLY 645 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~ka-l~~---L~-a~~RwlLTGTPiqN~l~DL~ 645 (1064)
+..--...+||+||+|++.+.. ...... +.. +. ....+++|+|+- +..++-
T Consensus 130 ---------------~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la 186 (674)
T PRK01172 130 ---------------PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELA 186 (674)
T ss_pred ---------------hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH
Confidence 0112246799999999996432 222222 222 22 345788999973 345543
No 40
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.34 E-value=4.3e-06 Score=99.43 Aligned_cols=119 Identities=16% Similarity=0.075 Sum_probs=74.7
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
..+||++|.. |..|+.+.+..+.....+++..+.|...... .........+|+|+|.+.|...+..
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~-----~~~~l~~~~~IlV~Tp~rl~~~~~~-------- 140 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMN-----HAEVFSENQDIVVATPGRLLQYIKE-------- 140 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH-----HHHHhcCCCCEEEEChHHHHHHHHc--------
Confidence 4699999985 6789888888776544688888888643211 0111224679999999988765431
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhc-cCeEEEEeccCCCCChhhh
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPIQRKLDDL 644 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPiqN~l~DL 644 (1064)
..+..-...+||+||||++-... ......+..+. ....+++|+|+-...+.++
T Consensus 141 --------------~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~ 196 (434)
T PRK11192 141 --------------ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDF 196 (434)
T ss_pred --------------CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHH
Confidence 01222346789999999875433 22222223333 3456899999864444443
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=3.2e-06 Score=101.65 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=79.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+|||+|. +|+.|+.+.+... .+++..+.|...... ............++|+++|.+.+......
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~-~~~i~~~~~~~~~~il~~TPe~l~~~~~~-------- 118 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQ-QKNVLTDLKDGKIKLLYVTPEKCSASNRL-------- 118 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHcCchhH--------
Confidence 468999998 6778899988764 466666666543210 00000111234689999999988653210
Q ss_pred hhhhhhcccCCCcchhh-cccccceEEeccccccCChH-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 001510 578 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L-~~i~w~rVIlDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1064)
. ..+ ......+||+||||.+-... .........++....+++||||-.....|+...+.
T Consensus 119 ---~----------~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 119 ---L----------QTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred ---H----------HHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcC
Confidence 0 112 34467899999999985422 11112222345567899999998877777777665
Q ss_pred ccCC
Q 001510 650 FLKS 653 (1064)
Q Consensus 650 FL~p 653 (1064)
+-.|
T Consensus 186 l~~~ 189 (470)
T TIGR00614 186 LKNP 189 (470)
T ss_pred CCCC
Confidence 5443
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=98.32 E-value=6.8e-06 Score=104.12 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=75.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+|+|+|. +|+.|+.+++.++.+ -.+++.++.|.... ....+...+|+|+|++.+.....+..
T Consensus 68 ~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~--------~~~~l~~~~IiV~Tpek~~~llr~~~------ 132 (737)
T PRK02362 68 GKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDS--------RDEWLGDNDIIVATSEKVDSLLRNGA------ 132 (737)
T ss_pred CcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCc--------cccccCCCCEEEECHHHHHHHHhcCh------
Confidence 479999997 688999999998753 25889999986543 12334678999999998765432100
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH-HHHHHH-HHHh----ccCeEEEEeccCCCCChhhhHhh
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEM-ALRL----YAKHRWCITGTPIQRKLDDLYGL 647 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~ka-l~~L----~a~~RwlLTGTPiqN~l~DL~sL 647 (1064)
..+ -...+||+||+|++.+.. ...... +.++ .....++||+|+- +..|+...
T Consensus 133 --------------~~l--~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~w 190 (737)
T PRK02362 133 --------------PWL--DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELADW 190 (737)
T ss_pred --------------hhh--hhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHHH
Confidence 011 235899999999997532 222222 2333 2346789999963 35555443
No 43
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.29 E-value=4.2e-06 Score=109.27 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=72.7
Q ss_pred CcEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
..+||+||+..+ .|..+.|.+.+..-.+++.++.|....... ............||||+|++.+...+.
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL~~~v~--------- 719 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLLQSDVK--------- 719 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHHhCCCC---------
Confidence 469999999755 799999987665334677777765432110 000011112467999999987764321
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhc-cCeEEEEeccCCCCChh
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLD 642 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGTPiqN~l~ 642 (1064)
+ -...+||+||+|++... ....++.++ ....+++|+||+++.+.
T Consensus 720 ----------------~--~~L~lLVIDEahrfG~~---~~e~lk~l~~~~qvLl~SATpiprtl~ 764 (1147)
T PRK10689 720 ----------------W--KDLGLLIVDEEHRFGVR---HKERIKAMRADVDILTLTATPIPRTLN 764 (1147)
T ss_pred ----------------H--hhCCEEEEechhhcchh---HHHHHHhcCCCCcEEEEcCCCCHHHHH
Confidence 1 24678999999998432 233445554 45789999999987653
No 44
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.28 E-value=7.9e-06 Score=97.88 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=70.9
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
.+|||||. .|..||.+++.++...-.+++....|...... ........++|+|+|.+.|......
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~-----~~~~l~~~~~IiV~TP~rL~~~~~~--------- 142 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINP-----QMMKLRGGVDVLVATPGRLLDLEHQ--------- 142 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHH-----HHHHHcCCCcEEEEChHHHHHHHHc---------
Confidence 58999998 56789999999887544567766666543210 0112234689999999998764321
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhcc-CeEEEEeccCC
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPi 637 (1064)
..+..-..++||+||||++-... ......+..+.. ...+++|+|+-
T Consensus 143 -------------~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 143 -------------NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred -------------CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc
Confidence 01222346789999999875433 222333444543 34789999963
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.26 E-value=5.5e-06 Score=106.04 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=72.3
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
..+||+||+.. ..|..+.|.+++..-.+++.+++|....... ......-..++.||||+|...+.+.+.
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~-~~~~~~l~~g~~dIVIGTp~ll~~~v~--------- 570 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQ-NEILKELASGKIDILIGTHKLLQKDVK--------- 570 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHH-HHHHHHHHcCCceEEEchHHHhhCCCC---------
Confidence 36899999865 5799999999876445677777775432100 000011112368999999977654321
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhc-cCeEEEEeccCCCCChh
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLD 642 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGTPiqN~l~ 642 (1064)
+. +..+||+||+|++.- .....+..+. ....+++|+||+...+.
T Consensus 571 ----------------f~--~L~llVIDEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 571 ----------------FK--DLGLLIIDEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTLH 615 (926)
T ss_pred ----------------cc--cCCEEEeecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHHH
Confidence 22 346899999999742 2334445554 45789999999876543
No 46
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.20 E-value=1.2e-05 Score=96.49 Aligned_cols=111 Identities=21% Similarity=0.164 Sum_probs=71.6
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 500 ATLIVCPA-PILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~-~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.+||+||. .|..||.+++.++... ..+++..++|....... ........+|+|+|.+.+...+..
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~-----~~~l~~~~~IvV~Tp~rl~~~l~~-------- 140 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQ-----IDSLEHGAHIIVGTPGRILDHLRK-------- 140 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHH-----HHHhcCCCCEEEEChHHHHHHHHc--------
Confidence 48999998 5778999999987531 25788888775432110 011124679999999998765531
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhc-cCeEEEEeccCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPi 637 (1064)
..+.--.+.+||+||||.+-+.. ......+..++ ....+++|+|+-
T Consensus 141 --------------~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 141 --------------GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred --------------CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc
Confidence 01222356789999999875432 23334444444 345789999973
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=98.20 E-value=1.9e-05 Score=99.87 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=75.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+|+|+|. .|+.|+.+++.+|.. -+++|..++|.... ....+..++|+|+|++.+...+.+.
T Consensus 69 ~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~--------~~~~~~~~~IiV~Tpe~~~~ll~~~------- 132 (720)
T PRK00254 69 GKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDS--------TDEWLGKYDIIIATAEKFDSLLRHG------- 132 (720)
T ss_pred CeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCC--------chhhhccCCEEEEcHHHHHHHHhCC-------
Confidence 468999997 577899999987643 25888889886543 1223467899999999876543210
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCCh--HHHHHHHHHHhc-cCeEEEEeccCCCCChhhhHh
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYG 646 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPiqN~l~DL~s 646 (1064)
. ..+ -...+||+||+|.+... .......+..+. ....+++|+|.- +..|+-.
T Consensus 133 -------~------~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 133 -------S------SWI--KDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred -------c------hhh--hcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH
Confidence 0 012 24578999999999643 233333444443 456788999973 3566554
No 48
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.17 E-value=1.4e-05 Score=100.45 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=82.6
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
++.+-|||. +|..+=.+|+.+|-. -+++|.+++|.... ....+.++||+||||+.+-.-..+.
T Consensus 77 ~k~vYivPlkALa~Ek~~~~~~~~~-~GirV~~~TgD~~~--------~~~~l~~~~ViVtT~EK~Dsl~R~~------- 140 (766)
T COG1204 77 GKVVYIVPLKALAEEKYEEFSRLEE-LGIRVGISTGDYDL--------DDERLARYDVIVTTPEKLDSLTRKR------- 140 (766)
T ss_pred CcEEEEeChHHHHHHHHHHhhhHHh-cCCEEEEecCCccc--------chhhhccCCEEEEchHHhhHhhhcC-------
Confidence 588999996 777888888884432 37999999998654 4577899999999999886544321
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCCh-H-----HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhcc
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-A-----AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 651 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~-~-----Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL 651 (1064)
+.....-+.||+||+|++... . +-.+++...-...+-++||+| ++ |.+| +-.||
T Consensus 141 ---------------~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSAT-lp-N~~e---vA~wL 200 (766)
T COG1204 141 ---------------PSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSAT-LP-NAEE---VADWL 200 (766)
T ss_pred ---------------cchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeee-cC-CHHH---HHHHh
Confidence 123345679999999999877 3 333333332223467889999 22 2333 44566
Q ss_pred CCCCC
Q 001510 652 KSSPF 656 (1064)
Q Consensus 652 ~p~~f 656 (1064)
+..++
T Consensus 201 ~a~~~ 205 (766)
T COG1204 201 NAKLV 205 (766)
T ss_pred CCccc
Confidence 55543
No 49
>PTZ00424 helicase 45; Provisional
Probab=98.15 E-value=2e-05 Score=92.55 Aligned_cols=111 Identities=16% Similarity=0.076 Sum_probs=69.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-hcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
..+|||+|. .|..|+.+.+..+.....+.+....|...... .... ....+|+|+|.+.+...+..
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Ivv~Tp~~l~~~l~~------- 163 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRD------DINKLKAGVHMVVGTPGRVYDMIDK------- 163 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH------HHHHHcCCCCEEEECcHHHHHHHHh-------
Confidence 468999997 46688888888776533455555555432110 1112 23468999999988764421
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhcc-CeEEEEeccCC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPi 637 (1064)
..+..-.+++||+||+|.+.... ......+..+.. ...+++|+|+-
T Consensus 164 ---------------~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 164 ---------------RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred ---------------CCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 01222356789999999875432 344555555543 46788999964
No 50
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.14 E-value=1.6e-05 Score=98.28 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=81.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+|||+|. +|+.++.+.+... .+++..+++...... ............++|+++|.+.+....-
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~-~~~~~~~l~~~~~~il~~tpe~l~~~~~--------- 119 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKE-QQDIEKALVNGELKLLYVAPERLEQDYF--------- 119 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHH-HHHHHHHHhCCCCCEEEEChhHhcChHH---------
Confidence 468999997 6788999988875 466777766533210 0000111223568999999998864321
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhc
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1064)
...+......+||+||||.+.... .+.......++....+++|+|+......|+...+.+
T Consensus 120 -------------~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~ 186 (591)
T TIGR01389 120 -------------LNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRL 186 (591)
T ss_pred -------------HHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 022445678899999999985421 122233334445568999999988888888777654
Q ss_pred cCC
Q 001510 651 LKS 653 (1064)
Q Consensus 651 L~p 653 (1064)
-.+
T Consensus 187 ~~~ 189 (591)
T TIGR01389 187 ADA 189 (591)
T ss_pred CCC
Confidence 443
No 51
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.12 E-value=1.9e-05 Score=97.86 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=78.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+|||+|. +|+.||.+.+... .+.+..+++....... ............+++++|.+.+..+.-
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~--------- 131 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNF--------- 131 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHH---------
Confidence 468999997 6778898888765 3556666554321100 000011122467899999888764310
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH---HHHHHHHH----HhccCeEEEEeccCCCCChhhhHhhhhc
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~---Sk~~kal~----~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1064)
...+......+||+||||.+-... ...++.+. .++....+++|+|+-.....++...+.+
T Consensus 132 -------------~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l 198 (607)
T PRK11057 132 -------------LEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL 198 (607)
T ss_pred -------------HHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCC
Confidence 012444567899999999986422 11222232 3345668999999988877777777665
Q ss_pred cCC
Q 001510 651 LKS 653 (1064)
Q Consensus 651 L~p 653 (1064)
-.|
T Consensus 199 ~~~ 201 (607)
T PRK11057 199 NDP 201 (607)
T ss_pred CCe
Confidence 443
No 52
>PTZ00110 helicase; Provisional
Probab=98.11 E-value=2.3e-05 Score=95.86 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=69.9
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
.+|||||. .|..|+.+++.++.....+++.+..|...... .........+|+|+|.+.|...+...
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~-----q~~~l~~~~~IlVaTPgrL~d~l~~~-------- 271 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRG-----QIYALRRGVEILIACPGRLIDFLESN-------- 271 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHH-----HHHHHHcCCCEEEECHHHHHHHHHcC--------
Confidence 58999998 47789999999988654566665555432210 01122245799999999887654310
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhc-cCeEEEEeccC
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTP 636 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTP 636 (1064)
.+..-...+||+||||++-... -+..+.+..++ ....+++|+|.
T Consensus 272 --------------~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 272 --------------VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred --------------CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 1112246789999999876543 23334444453 34568899995
No 53
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.10 E-value=2.7e-05 Score=94.84 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=70.6
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
..+|||+|.. |..|+.+++..+...-.+++..+.|....... ........+|+|+|.+.|...+...
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q-----~~~l~~~~~IiV~TPgrL~~~l~~~------- 264 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ-----LYRIQQGVELIVGTPGRLIDLLSKH------- 264 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH-----HHHhcCCCCEEEECHHHHHHHHHcC-------
Confidence 4699999985 67899999988875334555544443221100 1111245799999999887654310
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCCh--HHHHHHHHHHhccCeEEEEeccCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGTPI 637 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~--~Sk~~kal~~L~a~~RwlLTGTPi 637 (1064)
.+..-...+||+||||.+-.. .....+.+..+.....+++|+|.-
T Consensus 265 ---------------~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 265 ---------------DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred ---------------CccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 011223467999999987543 234445555666778899999963
No 54
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.09 E-value=4e-05 Score=93.84 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=84.0
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+++.+|.. |+.|=..++.....+ -.+....|....+.. ........+|++.|-.++.+++.....
T Consensus 107 ~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~-----r~~i~~s~~vff~TpQil~ndL~~~~~----- 174 (746)
T KOG0354|consen 107 GKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSN-----RGEIVASKRVFFRTPQILENDLKSGLH----- 174 (746)
T ss_pred ceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCc-----hhhhhcccceEEeChHhhhhhcccccc-----
Confidence 6899999984 667766888888753 555555555333211 235567789999999999998853110
Q ss_pred hhhhhhcccCCCcchhhcccccceEEecccccc-CChH-HHHHHHHHHhc--cCeEEEEeccCCCCChhhhHhhhhccCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV-ESNA-AAATEMALRLY--AKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~I-KN~~-Sk~~kal~~L~--a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1064)
..--.|-++|+||||+- ||.. +...+....++ ....++||+||= +++++..+.+.=|..
T Consensus 175 ----------------~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~a 237 (746)
T KOG0354|consen 175 ----------------DELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCA 237 (746)
T ss_pred ----------------cccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhe
Confidence 01235789999999995 4432 55555555554 336789999998 667666665554444
Q ss_pred C
Q 001510 654 S 654 (1064)
Q Consensus 654 ~ 654 (1064)
.
T Consensus 238 s 238 (746)
T KOG0354|consen 238 S 238 (746)
T ss_pred e
Confidence 3
No 55
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.06 E-value=4.1e-05 Score=90.86 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=70.9
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-hcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
..+||+||.. |..||.+++.++...-.+++..+.|...... .... ....||+|+|.+.+...+..
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~------~~~~l~~~~~IlV~TP~~l~~~l~~------- 150 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK------QLKVLESGVDILIGTTGRLIDYAKQ------- 150 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEECHHHHHHHHHc-------
Confidence 4689999985 6789999888877644688888877543211 1111 23579999999998765421
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhcc---CeEEEEeccCC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA---KHRWCITGTPI 637 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a---~~RwlLTGTPi 637 (1064)
..+..-...+||+||||.+-... ......+..+.. ...+++|+|.-
T Consensus 151 ---------------~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 151 ---------------NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred ---------------CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCC
Confidence 11223356789999999875432 222233334432 23578899964
No 56
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.02 E-value=5.5e-05 Score=91.19 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=71.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
..+|||+|. .|..|+.+++..+...-.+++..++|....... .........+|+|+|.+.|.......
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~----~~~~~~~~~~Iiv~TP~~Ll~~~~~~------- 231 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ----LKQLEARFCDILVATPGRLLDFNQRG------- 231 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH----HHHHhCCCCCEEEECHHHHHHHHHcC-------
Confidence 468999998 577899999988765446788888876432110 01111245799999999986533210
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhc---cCeEEEEeccCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~---a~~RwlLTGTPi 637 (1064)
.+..-...+||+||+|.+.+.. ....+.+..+. ....+++|+|..
T Consensus 232 ---------------~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 232 ---------------EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred ---------------CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 1112245789999999986543 22333334332 245788999954
No 57
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.96 E-value=7e-05 Score=92.20 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=71.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhh-hhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDIS-ELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~-~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
..+|||||. .|..|+.+++.++...-.+++..++|...... ... ....+||||+|.+.|...+...
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~------q~~~l~~~~dIiV~TP~rL~~~l~~~------ 152 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDK------QRELLQQGVDVIIATPGRLIDYVKQH------ 152 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHHhCCCCEEEECHHHHHHHHHhc------
Confidence 469999998 56789999999987655678888777543211 111 1235799999999887654210
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhc---cCeEEEEeccCC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~---a~~RwlLTGTPi 637 (1064)
..+......+|||||||.+-... ......+..+. ....+++|+|.-
T Consensus 153 ---------------~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~ 203 (572)
T PRK04537 153 ---------------KVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS 203 (572)
T ss_pred ---------------cccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc
Confidence 01112235679999999875422 22223334443 345788999964
No 58
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.93 E-value=9.2e-05 Score=91.95 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=69.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~-~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
..+||+||. .|..||.+++.++... ..+++..++|...... .........+|||+|.+.+...+..
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~-----q~~~l~~~~~IVVgTPgrl~d~l~r------- 142 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV-----QLRALRQGPQIVVGTPGRLLDHLKR------- 142 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH-----HHHHhcCCCCEEEECHHHHHHHHHc-------
Confidence 358999998 5778999998877531 2577777666543210 0111124578999999998765431
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhcc-CeEEEEeccC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTP 636 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTP 636 (1064)
..+.--....|||||||.+-+.. ......+..++. ...+++|+|.
T Consensus 143 ---------------~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 143 ---------------GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 (629)
T ss_pred ---------------CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccC
Confidence 11222345679999999764432 333444555554 4568889995
No 59
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.84 E-value=0.00018 Score=92.81 Aligned_cols=120 Identities=18% Similarity=0.092 Sum_probs=69.0
Q ss_pred CcEEEEeCC-chHHHHHHH-------HHhcC-----CCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhh
Q 001510 499 GATLIVCPA-PILAQWDAE-------ITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKE 565 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~E-------i~k~~-----~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~ 565 (1064)
..+|+|+|. .|..|+.+. +.+++ ..+.+++.+++|....... ........+|+|||.+.+..
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r-----~~~l~~~p~IlVtTPE~L~~ 159 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEK-----QKMLKKPPHILITTPESLAI 159 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHH-----HHHHhCCCCEEEecHHHHHH
Confidence 358999997 566666553 33332 1126788999997543210 01112357999999999875
Q ss_pred hcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHh---c--cCeEEEEeccCCC
Q 001510 566 DLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL---Y--AKHRWCITGTPIQ 638 (1064)
Q Consensus 566 d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L---~--a~~RwlLTGTPiq 638 (1064)
.+... .....|. ...+||+||+|.+-+.. ......+.+| . ...++++|+|.-
T Consensus 160 ll~~~------------------~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~- 218 (876)
T PRK13767 160 LLNSP------------------KFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE- 218 (876)
T ss_pred HhcCh------------------hHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC-
Confidence 44210 0001122 34679999999987432 3333333333 2 356899999963
Q ss_pred CChhhhH
Q 001510 639 RKLDDLY 645 (1064)
Q Consensus 639 N~l~DL~ 645 (1064)
+++++-
T Consensus 219 -~~~~va 224 (876)
T PRK13767 219 -PLEEVA 224 (876)
T ss_pred -CHHHHH
Confidence 344443
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=97.83 E-value=0.00016 Score=95.18 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=56.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh--hcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE--LVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~--l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
..+|||||+ .|+.||.+.+.++.....+.+.+..|......... ...... -..++|+|+|.+.+.+.+.
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek-~~~~~~l~~~~~~IlV~Tp~rL~~~~~------- 195 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEK-EEFLERLKEGDFDILVTTSQFLSKNFD------- 195 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHH-HHHHHHHhcCCCCEEEECHHHHHHHHH-------
Confidence 469999998 56789999999998644555544443321100000 001111 2458999999999887542
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccccC
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IK 611 (1064)
.+....++.||+||||++-
T Consensus 196 -----------------~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 196 -----------------ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred -----------------hccccccCEEEEEChHHhh
Confidence 1334458999999999864
No 61
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.83 E-value=0.0001 Score=94.04 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=72.8
Q ss_pred CcEEEEeCCchHH-HHHHHHHhcCCC--CCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 499 GATLIVCPAPILA-QWDAEITRHTRP--GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 499 ~~tLIV~P~SLl~-QW~~Ei~k~~~~--~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
.+.|+|-|..-+. .=.+.+.++... +.+++.+|+|....... ..-.-...+|+||+|+++-..+-...+
T Consensus 116 a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r-----~~~~~~pp~IllTNpdMLh~~llr~~~--- 187 (851)
T COG1205 116 ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEER-----RAIIRNPPDILLTNPDMLHYLLLRNHD--- 187 (851)
T ss_pred ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHH-----HHHHhCCCCEEEeCHHHHHHHhccCcc---
Confidence 4789999986554 344556655542 25789999998654211 122346789999999999774421110
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccccCChH-HHHHHHHHHhccC--------eEEEEecc
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAK--------HRWCITGT 635 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~kal~~L~a~--------~RwlLTGT 635 (1064)
+ .....-++.+||+||+|..+... |..+-.+++|.-. .-++.|+|
T Consensus 188 ----------~-----~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 188 ----------A-----WLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred ----------h-----HHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 0 01222238999999999987654 7777777776422 34778887
No 62
>COG4889 Predicted helicase [General function prediction only]
Probab=97.83 E-value=2.5e-05 Score=94.72 Aligned_cols=116 Identities=22% Similarity=0.181 Sum_probs=62.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccc--------------------chhhhhcCCCEEE
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSI--------------------MDISELVGADIVL 557 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~--------------------~~~~~l~~~DVVI 557 (1064)
..+|.+||+ +|+.|=.+|...-..- .++........+........ ........--||.
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 578999997 7888877776544321 23333333332221110000 0001112234788
Q ss_pred EehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH------HHHHHH--HHHhccCeE
Q 001510 558 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA------AAATEM--ALRLYAKHR 629 (1064)
Q Consensus 558 TTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~------Sk~~ka--l~~L~a~~R 629 (1064)
.||..+-.-... ....--.|+.||+||||+--... |..++. -..+++..|
T Consensus 286 sTYQSl~~i~eA----------------------Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kR 343 (1518)
T COG4889 286 STYQSLPRIKEA----------------------QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKR 343 (1518)
T ss_pred EcccchHHHHHH----------------------HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHh
Confidence 888877543210 12334569999999999853211 111111 124678889
Q ss_pred EEEeccCC
Q 001510 630 WCITGTPI 637 (1064)
Q Consensus 630 wlLTGTPi 637 (1064)
+-+|+||=
T Consensus 344 lYmTATPk 351 (1518)
T COG4889 344 LYMTATPK 351 (1518)
T ss_pred hhcccCch
Confidence 99999993
No 63
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.82 E-value=0.00014 Score=91.32 Aligned_cols=108 Identities=12% Similarity=0.013 Sum_probs=66.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+||++|. .|..||.+.+.+++ ..++.+++|........ ...........+|||.|...+..
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~-~~~~~~~~g~~~IVVgTrsal~~------------ 254 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERL-DEWRKAKRGEAKVVIGARSALFL------------ 254 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHH-HHHHHHHcCCCCEEEeccHHhcc------------
Confidence 469999998 57799999999987 46888898864321000 00011122457899999865532
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCC--hHHHH--HHHH----HHhccCeEEEEeccCCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAA--TEMA----LRLYAKHRWCITGTPIQR 639 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN--~~Sk~--~kal----~~L~a~~RwlLTGTPiqN 639 (1064)
++ -+..+||+||+|...- ..... ++.+ ........+++|+||...
T Consensus 255 ---------------p~--~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~ 307 (679)
T PRK05580 255 ---------------PF--KNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLE 307 (679)
T ss_pred ---------------cc--cCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHH
Confidence 22 2357999999997532 11111 1111 123345678899999643
No 64
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.81 E-value=7e-05 Score=90.64 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=80.3
Q ss_pred cEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~SLl-~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
-+...+|+.++ .|=-..+.+|+++-+++|....|.-+.... ......-..+..||||=|+..+...+..
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r-~~~l~~l~~G~~~ivVGTHALiQd~V~F--------- 382 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKAR-KEILEQLASGEIDIVVGTHALIQDKVEF--------- 382 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHH-HHHHHHHhCCCCCEEEEcchhhhcceee---------
Confidence 35677899887 699999999999877999999998654321 1111222335689999999998876532
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHh-c-cCeEEEEeccCCCCChh
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-Y-AKHRWCITGTPIQRKLD 642 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L-~-a~~RwlLTGTPiqN~l~ 642 (1064)
-+..+||+||=|++. ......++.- . ..|.+++|+|||+.++.
T Consensus 383 ------------------~~LgLVIiDEQHRFG---V~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 383 ------------------HNLGLVIIDEQHRFG---VHQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred ------------------cceeEEEEecccccc---HHHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 134689999999985 2333444433 3 47999999999999874
No 65
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.80 E-value=0.00025 Score=82.47 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=69.3
Q ss_pred cEEEEeCC-chHHHHHHHHHhcC----CCCCCeEEEEcCCCccc---cc-------cccc-----chhhhhcCCCEEEEe
Q 001510 500 ATLIVCPA-PILAQWDAEITRHT----RPGSLKTCIYEGARNSS---LS-------DTSI-----MDISELVGADIVLTT 559 (1064)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~----~~~~L~V~vy~G~~~~~---~~-------~~~~-----~~~~~l~~~DVVITT 559 (1064)
++++|+|. +|..+|.+.+.+++ +.....+..+.|..... .. .... .........+|++|+
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 57999997 57788888888776 22357788888862211 00 0000 000112467899999
Q ss_pred hHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHH-------HHHHHHHHhc-cCeEEE
Q 001510 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-------AATEMALRLY-AKHRWC 631 (1064)
Q Consensus 560 YetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~S-------k~~kal~~L~-a~~Rwl 631 (1064)
+++|........ +++........-...+||+||+|.+..... .....+.... ..+.++
T Consensus 121 p~~l~~llr~~~--------------~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 186 (357)
T TIGR03158 121 PDIFVYLTRFAY--------------IDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVF 186 (357)
T ss_pred HHHHHHHHhhhc--------------cCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEE
Confidence 999865321100 000000011123678999999999875331 1122222222 357899
Q ss_pred EeccCCC
Q 001510 632 ITGTPIQ 638 (1064)
Q Consensus 632 LTGTPiq 638 (1064)
+||||-.
T Consensus 187 lSAT~~~ 193 (357)
T TIGR03158 187 LSATPDP 193 (357)
T ss_pred EecCCCH
Confidence 9999854
No 66
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.77 E-value=0.00023 Score=90.17 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=69.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
...|||+|.- |..|=..++.++.. ..+++.+|+|...... ........+|||||.+++...+-.. +
T Consensus 82 ~~aL~l~PtraLa~q~~~~l~~l~~-~~i~v~~~~Gdt~~~~------r~~i~~~~~IivtTPd~L~~~~L~~---~--- 148 (742)
T TIGR03817 82 ATALYLAPTKALAADQLRAVRELTL-RGVRPATYDGDTPTEE------RRWAREHARYVLTNPDMLHRGILPS---H--- 148 (742)
T ss_pred cEEEEEcChHHHHHHHHHHHHHhcc-CCeEEEEEeCCCCHHH------HHHHhcCCCEEEEChHHHHHhhccc---h---
Confidence 3689999984 55677777887762 3688999999754311 1111234789999999886432100 0
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCCh-HHHHHHHHHHhc--------cCeEEEEeccC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAAATEMALRLY--------AKHRWCITGTP 636 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~-~Sk~~kal~~L~--------a~~RwlLTGTP 636 (1064)
.+ ....|. .-.+||+||||.+... .+.....+.+|+ ....+++|+|-
T Consensus 149 -------~~---~~~~l~--~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi 204 (742)
T TIGR03817 149 -------AR---WARFLR--RLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT 204 (742)
T ss_pred -------hH---HHHHHh--cCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 00 001122 3478999999998652 344444444442 23578999994
No 67
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.64 E-value=0.0013 Score=78.49 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=70.9
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCC-eEEEEcCCCcccccccccchhhhhc-CCCEEEEehHHHhhhcccCCCCccc
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSL-KTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L-~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
.+||++|+- |..|=..++.++.....+ .+++|-|..... +...+. ..||||+|-..+...+..
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~-------Q~~~l~~gvdiviaTPGRl~d~le~------- 232 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGP-------QLRDLERGVDVVIATPGRLIDLLEE------- 232 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccH-------HHHHHhcCCcEEEeCChHHHHHHHc-------
Confidence 599999996 667999999999985555 456677765432 334444 489999999999877643
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCCh--HHHHHHHHHHh-ccCe-EEEEecc
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRL-YAKH-RWCITGT 635 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~--~Sk~~kal~~L-~a~~-RwlLTGT 635 (1064)
..+..-...++|||||.++-.. ..+.-+.+..+ +... .++-|+|
T Consensus 233 ---------------g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saT 280 (519)
T KOG0331|consen 233 ---------------GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSAT 280 (519)
T ss_pred ---------------CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeee
Confidence 1123334568999999986433 35555666666 3332 3444444
No 68
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.0004 Score=84.22 Aligned_cols=107 Identities=11% Similarity=0.014 Sum_probs=68.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+||++|. +|..|+.+.+++.+ ..++.++||......... ........+.+|||+|...+..
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~-~~~~~~~g~~~IVVGTrsalf~------------ 89 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ-AWRKVKNGEILVVIGTRSALFL------------ 89 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH-HHHHHHcCCCCEEECChHHHcC------------
Confidence 469999998 57899999999887 357888887643211000 0011123467899999887642
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccC--ChHHH------HHHHHHHhccCeEEEEeccCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAA------ATEMALRLYAKHRWCITGTPIQ 638 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IK--N~~Sk------~~kal~~L~a~~RwlLTGTPiq 638 (1064)
++. +.++||+||.|... ..... .+.....+.....+++|+||..
T Consensus 90 ---------------p~~--~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 90 ---------------PFK--NLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred ---------------ccc--CCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 222 35899999999853 22111 1222233456678999999973
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.44 E-value=0.00048 Score=79.71 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=68.0
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccc----cccc-c--------chhhhhcCCCEEEEehHHHh
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSL----SDTS-I--------MDISELVGADIVLTTYDVLK 564 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~----~~~~-~--------~~~~~l~~~DVVITTYetL~ 564 (1064)
+.+++|+|. +++.|+.+.+..++. . ++..++|...... .+.. . .........+|+++|.+.+.
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~ 106 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELFG--S-NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVL 106 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHhC--c-ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHH
Confidence 468999996 678999999999874 2 4555555422100 0000 0 00111235679999999887
Q ss_pred hhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH-HHHHHHHHHhc--cCeEEEEeccCC
Q 001510 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLY--AKHRWCITGTPI 637 (1064)
Q Consensus 565 ~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~kal~~L~--a~~RwlLTGTPi 637 (1064)
..+.... ....-.+..+.-.+||+||+|.+.... ......+..+. ....+++|+|+-
T Consensus 107 ~~~~~~~----------------~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SATlp 166 (358)
T TIGR01587 107 KSVFGEF----------------GHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSATLP 166 (358)
T ss_pred HHHhccc----------------chHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCch
Confidence 6542100 000012333444789999999987542 22333333343 345688999963
No 70
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.39 E-value=0.00091 Score=67.24 Aligned_cols=101 Identities=18% Similarity=0.122 Sum_probs=56.8
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
+.+||+.|.-++. +|+.+... .+.+.+-.... ........-|-+++|.++...+.
T Consensus 34 ~rvLvL~PTRvva---~em~~aL~--~~~~~~~t~~~----------~~~~~g~~~i~vMc~at~~~~~~---------- 88 (148)
T PF07652_consen 34 LRVLVLAPTRVVA---EEMYEALK--GLPVRFHTNAR----------MRTHFGSSIIDVMCHATYGHFLL---------- 88 (148)
T ss_dssp --EEEEESSHHHH---HHHHHHTT--TSSEEEESTTS----------S----SSSSEEEEEHHHHHHHHH----------
T ss_pred CeEEEecccHHHH---HHHHHHHh--cCCcccCceee----------eccccCCCcccccccHHHHHHhc----------
Confidence 6899999998774 45555553 34433222111 11233556688999999876542
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHH-Hhc---cCeEEEEeccCCC
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RLY---AKHRWCITGTPIQ 638 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~-~L~---a~~RwlLTGTPiq 638 (1064)
.+.....|++||+||+|.. .+.|-+++-.. .+. ....+.+|+||--
T Consensus 89 -------------~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 89 -------------NPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp -------------TSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred -------------CcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 1234568999999999985 45555554433 221 2357899999953
No 71
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.39 E-value=0.0011 Score=85.36 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=72.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch--hhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~--~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
+.+|||+|. +|+.+....+... .+++..+.|...... ...... ......++|+++|-+.+...-.
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~e-q~~ilr~l~s~~g~~~ILyvTPERL~~~d~------- 568 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAE-QLEILQELSSEYSKYKLLYVTPEKVAKSDS------- 568 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHH-HHHHHHHHHhcCCCCCEEEEChHHhhcchH-------
Confidence 469999997 5666455555442 466655555432110 000000 0122578999999998764200
Q ss_pred cchhhhhhcccCCCcchhhc-ccccceEEeccccccCChH---HHHHHH----HHHhccCeEEEEeccCCCCChhhhHhh
Q 001510 576 GDRRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMVESNA---AAATEM----ALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~-~i~w~rVIlDEAH~IKN~~---Sk~~ka----l~~L~a~~RwlLTGTPiqN~l~DL~sL 647 (1064)
..+.- ..+. .....+|||||||.+-... -..++. ...+.....++||+|...+...|+...
T Consensus 569 ----ll~~L-------~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~ 637 (1195)
T PLN03137 569 ----LLRHL-------ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQA 637 (1195)
T ss_pred ----HHHHH-------HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHH
Confidence 00000 0011 1235789999999975422 111222 223456678999999988877787776
Q ss_pred hhccC
Q 001510 648 LRFLK 652 (1064)
Q Consensus 648 L~FL~ 652 (1064)
|....
T Consensus 638 L~l~~ 642 (1195)
T PLN03137 638 LGLVN 642 (1195)
T ss_pred cCCCC
Confidence 65433
No 72
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.20 E-value=0.0045 Score=78.91 Aligned_cols=132 Identities=13% Similarity=0.080 Sum_probs=68.9
Q ss_pred CcEEEEeCCc-hHHHHHHHHH-----hcCC----CCCCeEEEEcCCCcccccccccc-hhhhh--------cCCCEEEEe
Q 001510 499 GATLIVCPAP-ILAQWDAEIT-----RHTR----PGSLKTCIYEGARNSSLSDTSIM-DISEL--------VGADIVLTT 559 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~-----k~~~----~~~L~V~vy~G~~~~~~~~~~~~-~~~~l--------~~~DVVITT 559 (1064)
..+|||||.. +.....+=+. .|+. ...++..+|...++........+ ....+ ....|+|+|
T Consensus 90 ~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~n 169 (986)
T PRK15483 90 FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLIN 169 (986)
T ss_pred cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEe
Confidence 5799999984 3344333222 3332 22477888886542111000000 11111 135699999
Q ss_pred hHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCC
Q 001510 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1064)
Q Consensus 560 YetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1064)
-+.|.++... ....+...+ ... ..|-...+-.=-.||+||+|++.. ..+..+++..|+..+.+--|+|--.
T Consensus 170 iqa~n~~~~~---~~~~D~~l~--~g~--~~p~~~i~~~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 170 AGMLNSASMT---RDDYDQTLL--GGF--TSPVDALAATRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred hHHhcccccc---cchhhhhhc--cCC--CChHHHHHhCCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecCC
Confidence 9999764210 000000000 000 000011111223699999999965 2456688899999998889999643
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.17 E-value=0.0024 Score=79.91 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=65.4
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCC-CcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGA-RNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~-~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.++||+|.. |..||.+++..+...-++.|.+..+. ...... .........+||+++|.+.|..++-.+.
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~---~~~rr~~y~~dIvygTp~~LgfDyLrD~------ 183 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYD---ANEKRKIYNSDIVYTTNSALGFDYLIDN------ 183 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccC---HHHHHHhCCCCEEEECchhhhhhHHHHH------
Confidence 589999986 56777777755543225666554332 211110 0011222468999999999865421100
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1064)
+... ...+..-...++|+||||.+--. .|+.-+++||.|-.. .++|...
T Consensus 184 ---l~~~------~~~~~~r~l~~~IVDEaDsILiD-----------eartpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 184 ---LASN------KEGKFLRPFNYVIVDEVDSVLLD-----------SAQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred ---hhcc------hhhcccccCcEEEEecHhhHhhc-----------cCcCCeeeeCCCccc--hHHHHHH
Confidence 0000 00112235678999999987322 245568899977533 4466654
No 74
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.07 E-value=0.0027 Score=79.64 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=82.4
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
.++-|+|. +|..--.+-+.+.+.+=+++|.-+.|.... ...+..+.+|+|||-+.+----.+. .++
T Consensus 166 KiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql--------~~tei~~tqiiVTTPEKwDvvTRk~----~~d- 232 (1230)
T KOG0952|consen 166 KIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQL--------TKTEIADTQIIVTTPEKWDVVTRKS----VGD- 232 (1230)
T ss_pred eEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchh--------hHHHHHhcCEEEecccceeeeeeee----ccc-
Confidence 68888996 444333333333332236899999997654 4456889999999977542110000 000
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChH-----HHHHHHHHH----hccCeEEEEeccCCCCChhhhHhhhh
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-----AAATEMALR----LYAKHRWCITGTPIQRKLDDLYGLLR 649 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-----Sk~~kal~~----L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1064)
+.|. -.-.+||+||.|.+.... +-.+++++. ...-+-++||+| +-.+-.+-+
T Consensus 233 -------------~~l~-~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSAT-----lPN~eDvA~ 293 (1230)
T KOG0952|consen 233 -------------SALF-SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSAT-----LPNYEDVAR 293 (1230)
T ss_pred -------------hhhh-hheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeecc-----CCCHHHHHH
Confidence 0111 123589999999998776 344444432 234567889999 333445678
Q ss_pred ccCCCCCCccchhhhhhc
Q 001510 650 FLKSSPFSISRWWIEVIR 667 (1064)
Q Consensus 650 FL~p~~f~~~~~F~~~~~ 667 (1064)
||+..+....-.|...|.
T Consensus 294 fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 294 FLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred HhcCCCccceeeeccccc
Confidence 888887666666666553
No 75
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=96.95 E-value=0.0026 Score=83.97 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=55.9
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCe---EEEEcCCCcccccccccchhhhh--cCCCEEEEehHHHhhhcccCCC
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLK---TCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSD 572 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~---V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~ 572 (1064)
..+|||+|.. |..|+.+++.+++....++ +..|+|...... +......+ ..++|||+|...+...+.
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e---~~~~~~~l~~~~~dIlV~Tp~rL~~~~~---- 194 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKE---KKEFMERIENGDFDILITTTMFLSKNYD---- 194 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHH---HHHHHHHHhcCCCCEEEECHHHHHHHHH----
Confidence 4689999985 6689999999987532333 335777532210 00011112 358999999998876432
Q ss_pred CcccchhhhhhcccCCCcchhhcccccceEEeccccccCC
Q 001510 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1064)
Q Consensus 573 ~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN 612 (1064)
.+.. +++.+|+||||.+-.
T Consensus 195 --------------------~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 195 --------------------ELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred --------------------HhcC-CCCEEEEeChHhhhh
Confidence 1222 789999999998754
No 76
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.91 E-value=0.0048 Score=79.13 Aligned_cols=113 Identities=20% Similarity=0.204 Sum_probs=71.8
Q ss_pred CcEEEEeCCchHH-HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~SLl~-QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+-+-|+||++|+. |=-+-|..-+.+=.++|-+..--.... ........-..++.||||=|+..|.+++..
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~k-E~~~il~~la~G~vDIvIGTHrLL~kdv~F-------- 714 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAK-EQKEILKGLAEGKVDIVIGTHRLLSKDVKF-------- 714 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHH-HHHHHHHHHhcCCccEEEechHhhCCCcEE--------
Confidence 4588999999884 555555444431234444443322211 001111223346789999999999987632
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhcc-CeEEEEeccCCCCChh
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLD 642 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a-~~RwlLTGTPiqN~l~ 642 (1064)
-.-.+||+||=|+..= +.-..++.|++ .+.+-||+|||+..|.
T Consensus 715 -------------------kdLGLlIIDEEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 715 -------------------KDLGLLIIDEEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred -------------------ecCCeEEEechhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 1235899999999863 34466777765 5889999999999774
No 77
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.89 E-value=0.0088 Score=75.75 Aligned_cols=38 Identities=18% Similarity=-0.022 Sum_probs=23.4
Q ss_pred cceEEeccccccCChHHHHH-HHHHHh--cc----CeEEEEeccCC
Q 001510 599 WWRICLDEAQMVESNAAAAT-EMALRL--YA----KHRWCITGTPI 637 (1064)
Q Consensus 599 w~rVIlDEAH~IKN~~Sk~~-kal~~L--~a----~~RwlLTGTPi 637 (1064)
-.++|||||| +...-.... +.+..+ .. ...+++|+|+-
T Consensus 172 v~~LVLDEAD-Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 172 DALIVHDEAH-LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred ceEEEEehhh-hccccHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 4589999999 443333333 333332 22 36789999984
No 78
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.87 E-value=0.00039 Score=88.24 Aligned_cols=107 Identities=12% Similarity=-0.043 Sum_probs=75.9
Q ss_pred HHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHHHHHHH--HHHHHHHhhccC-CCC----cCeeEEeccC---------
Q 001510 815 KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM--AVVEEHSEDFRL-DPL----LNIHLHHNLT--------- 878 (1064)
Q Consensus 815 ~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~y~~~l--~~~~e~~~~f~~-D~~----~~lh~~~Nl~--------- 878 (1064)
....++.+.++++|+|....|+.++..+..-......-. +...+-...|.- |-+ +....+.||.
T Consensus 1214 ~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d~~dc~~~fk~I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1214 YIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKSIDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred HHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcchhhhhhhcccceEEEEEeccCcccccHHhhhhhheec
Confidence 456677779999999999999999977654433322221 122222333332 111 1113455555
Q ss_pred -ccCcchhhhhhh-hhccCCCCceEEEEcccCCccccchhhHhhh
Q 001510 879 -EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKC 921 (1064)
Q Consensus 879 -~~np~~~~Qa~~-~~riGq~~~v~v~rl~~~~t~ee~~~~~~k~ 921 (1064)
=.||..+.||+. +|||||++++.||+++..+|+||+|....+-
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~ 1338 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITS 1338 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhh
Confidence 589999999999 9999999999999999999999999988765
No 79
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.84 E-value=0.0029 Score=73.85 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=70.2
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
+-+.+||+|.- |..|=.++|.+|++..++.|+...|.+.-.....+..........||+|+|-+.|..++...
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~------ 288 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT------ 288 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC------
Confidence 34789999986 55799999999999888999999998764432222223333446799999999999887532
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~ 614 (1064)
..+..-+-.++|+|||.++-+..
T Consensus 289 ---------------k~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 289 ---------------KSFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred ---------------CCcchhhceEEEechHHHHHHHH
Confidence 12444456689999999987644
No 80
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.62 E-value=0.0094 Score=75.12 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=78.2
Q ss_pred cEEEEeCCchHH-HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~SLl~-QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
.+|-|.|.--+. -=..-+..|...-++.|.+-||....... ........||+|||-++|.-.+...
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er-----~r~~~~PPdILiTTPEsL~lll~~~-------- 141 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEK-----QKMLKNPPHILITTPESLAILLNSP-------- 141 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHh-----hhccCCCCcEEEeChhHHHHHhcCH--------
Confidence 578888875432 22222222222227888888887654322 1122345899999999998766421
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhc----cCeEEEEeccCCCCChhhhHhhhhccC
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~----a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1064)
.....|..+. .||+||.|.+.+.+ ++++-.+.+|. --.|++||+| ..+..-+.+||.
T Consensus 142 ----------~~r~~l~~vr--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSAT-----V~~~~~varfL~ 204 (814)
T COG1201 142 ----------KFRELLRDVR--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSAT-----VGPPEEVAKFLV 204 (814)
T ss_pred ----------HHHHHhcCCc--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhc-----cCCHHHHHHHhc
Confidence 0112344444 59999999998665 66776666663 2569999999 445566677776
Q ss_pred CC
Q 001510 653 SS 654 (1064)
Q Consensus 653 p~ 654 (1064)
..
T Consensus 205 g~ 206 (814)
T COG1201 205 GF 206 (814)
T ss_pred CC
Confidence 65
No 81
>PRK14701 reverse gyrase; Provisional
Probab=96.12 E-value=0.017 Score=78.33 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=56.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCC--CCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPG--SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~--~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
..+|||+|+ .|+.|..+.+..++..- ..++..++|....... ......-....+||+|+|-+.+...+.
T Consensus 123 ~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~-~~~~~~l~~g~~dILV~TPgrL~~~~~------- 194 (1638)
T PRK14701 123 KKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEK-EEFLERIENGDFDILVTTAQFLARNFP------- 194 (1638)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECCchhHHhHH-------
Confidence 368999998 56789999999876421 3566778876432100 000001112358999999987765431
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccccC
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IK 611 (1064)
.+....++++|+||||.+-
T Consensus 195 -----------------~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 195 -----------------EMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred -----------------HHhhCCCCEEEEECceecc
Confidence 1222568899999999873
No 82
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.88 E-value=0.039 Score=69.90 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=62.4
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCc-ccccccccchhhhhcCCCEEEEehHHHhhhcccCCCC
Q 001510 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1064)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~~~L~V~vy~G~~~-~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1064)
..++||+|+..+. .|...+.++. ++++.++.|... .. ........||++.|...+.-|+-.+.-.
T Consensus 120 ~~v~VvTpt~~LA~qd~e~~~~l~~~l---Gl~v~~i~g~~~~~~-------~r~~~y~~dIvygT~~~l~fDyLrd~~~ 189 (790)
T PRK09200 120 KGVHLITVNDYLAKRDAEEMGQVYEFL---GLTVGLNFSDIDDAS-------EKKAIYEADIIYTTNSELGFDYLRDNLA 189 (790)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCcHH-------HHHHhcCCCEEEECCccccchhHHhccc
Confidence 4689999997663 6888888887 699988887643 11 2223455899999976664332110000
Q ss_pred cccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccC
Q 001510 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1064)
Q Consensus 574 ~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1064)
. .+..+..-...++|+|||+.+-=- .|+.-+++||.|
T Consensus 190 ~---------------~~~~~~~r~~~~~IvDEaDsiLiD-----------ea~tpliisg~~ 226 (790)
T PRK09200 190 D---------------SKEDKVQRPLNYAIIDEIDSILLD-----------EAQTPLIISGKP 226 (790)
T ss_pred c---------------chhhhcccccceEEEeccccceec-----------cCCCceeeeCCC
Confidence 0 001123346789999999987422 233457788754
No 83
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.79 E-value=0.046 Score=73.40 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=69.1
Q ss_pred CcEEEEeCCchH-HHHHHHHHh-----------cC-CCCCCeEEEEcCCCcccccccccchhhhh-cCCCEEEEehHHHh
Q 001510 499 GATLIVCPAPIL-AQWDAEITR-----------HT-RPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLK 564 (1064)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k-----------~~-~~~~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~ 564 (1064)
..+|+|+|.--+ .|=.++++. +. ....++|.+++|...... ....+ ...||+|||.+.+.
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~e------R~rll~~ppdILVTTPEsL~ 111 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQE------RSKLTRNPPDILITTPESLY 111 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHH------HHHHhcCCCCEEEecHHHHH
Confidence 469999998544 333333321 11 112588999999754321 11111 35799999999987
Q ss_pred hhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhc-----cCeEEEEeccCC
Q 001510 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-----AKHRWCITGTPI 637 (1064)
Q Consensus 565 ~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~-----a~~RwlLTGTPi 637 (1064)
..+... . ...|.. -..||+||+|.+.+.+ +.....+.+|. ...+|+||+|=
T Consensus 112 ~LLtsk------~-------------r~~L~~--Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI- 169 (1490)
T PRK09751 112 LMLTSR------A-------------RETLRG--VETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATV- 169 (1490)
T ss_pred HHHhhh------h-------------hhhhcc--CCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeC-
Confidence 654210 0 012333 4579999999997642 44444444442 34689999995
Q ss_pred CCChhhhHh
Q 001510 638 QRKLDDLYG 646 (1064)
Q Consensus 638 qN~l~DL~s 646 (1064)
++++++-.
T Consensus 170 -~n~eevA~ 177 (1490)
T PRK09751 170 -RSASDVAA 177 (1490)
T ss_pred -CCHHHHHH
Confidence 33566543
No 84
>PHA02653 RNA helicase NPH-II; Provisional
Probab=95.69 E-value=0.092 Score=65.90 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=58.9
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCC---CCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRP---GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~---~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
+.++|++|.- +..|...++.+...- ...++.+-.|...... ........+++|.|......
T Consensus 223 ~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~------~~t~~k~~~Ilv~T~~L~l~--------- 287 (675)
T PHA02653 223 RPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDEL------INTNPKPYGLVFSTHKLTLN--------- 287 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHH------hhcccCCCCEEEEeCccccc---------
Confidence 5799999984 456888888764421 1345555555432110 01122356888887432111
Q ss_pred ccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhc-c-CeEEEEeccCC
Q 001510 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-A-KHRWCITGTPI 637 (1064)
Q Consensus 575 ~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~-a-~~RwlLTGTPi 637 (1064)
.--....||+||||..-...-.....++.+. . +..+++|+|+-
T Consensus 288 --------------------~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 288 --------------------KLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred --------------------ccccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 1124678999999997544433333333332 2 35799999973
No 85
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.47 E-value=0.27 Score=52.43 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=22.3
Q ss_pred ccceEEeccccccCChHHHHHHHHHH-hccCeEEEEeccCCC
Q 001510 598 FWWRICLDEAQMVESNAAAATEMALR-LYAKHRWCITGTPIQ 638 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~Sk~~kal~~-L~a~~RwlLTGTPiq 638 (1064)
.|+.||+|||-.+.-.. ++.. ..+..+++|-|=|-|
T Consensus 192 ~~d~vIvDEAsq~~e~~-----~l~~l~~~~~~~vlvGD~~Q 228 (236)
T PF13086_consen 192 KFDVVIVDEASQITEPE-----ALIPLSRAPKRIVLVGDPKQ 228 (236)
T ss_dssp --SEEEETTGGGS-HHH-----HHHHHTTTBSEEEEEE-TTS
T ss_pred cCCEEEEeCCCCcchHH-----HHHHHHHhCCEEEEECChhh
Confidence 79999999998774322 2223 334489999998766
No 86
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=95.38 E-value=0.051 Score=68.06 Aligned_cols=98 Identities=9% Similarity=-0.023 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHHhhccC-------------
Q 001510 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEAMAVVEEHSEDFRL------------- 865 (1064)
Q Consensus 802 t~eelL~~Ll~~~~~e~~e~lrkvlifsq~la~L~iIe~~l~~a~~~---y~~~l~~~~e~~~~f~~------------- 865 (1064)
+..+-...+++.+. +..+.++.+|||++.....+.+.+.+.+.... +..--..++..+..|.-
T Consensus 386 t~~~k~~ai~~~i~-~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATnmAg 464 (745)
T TIGR00963 386 TEEEKWKAVVDEIK-ERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAG 464 (745)
T ss_pred CHHHHHHHHHHHHH-HHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEEEecccc
Confidence 45555556655543 33456799999999999999999888764211 11111223333322221
Q ss_pred ---CCCc-------CeeEEeccCccCcchhhhhhh-hhccCCCCce
Q 001510 866 ---DPLL-------NIHLHHNLTEILPMVANCATE-LSQNEQHFPG 900 (1064)
Q Consensus 866 ---D~~~-------~lh~~~Nl~~~np~~~~Qa~~-~~riGq~~~v 900 (1064)
|.-. -+|++..-..=++..++|... +-|-|++=..
T Consensus 465 RGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 465 RGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred CCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 1111 336655555567778888888 8888886333
No 87
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.94 E-value=0.082 Score=69.02 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=64.8
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
.+++|+=-. |-.|=.++|..+.. ...... ..... ......-.-....|||||-..|.......
T Consensus 305 ~v~fvvDR~dLd~Q~~~~f~~~~~--~~~~~~--~~~s~----~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~-------- 368 (962)
T COG0610 305 KVLFVVDRKDLDDQTSDEFQSFGK--VAFNDP--KAEST----SELKELLEDGKGKIIVTTIQKFNKAVKED-------- 368 (962)
T ss_pred eEEEEechHHHHHHHHHHHHHHHH--hhhhcc--cccCH----HHHHHHHhcCCCcEEEEEecccchhhhcc--------
Confidence 455555543 55799999998864 111111 11110 00001111124579999999888765321
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHH-HHhccCeEEEEeccCCCCChhh
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLYAKHRWCITGTPIQRKLDD 643 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal-~~L~a~~RwlLTGTPiqN~l~D 643 (1064)
......-....||+||||+--.+. .++.+ ..++.-.-++.|||||...-.+
T Consensus 369 ------------~~~~~~~~~ivvI~DEaHRSQ~G~--~~~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 369 ------------ELELLKRKNVVVIIDEAHRSQYGE--LAKLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred ------------cccccCCCcEEEEEechhhccccH--HHHHHHHHhccceEEEeeCCcccccccc
Confidence 012345567889999999854433 22222 3355567889999999865443
No 88
>PRK09694 helicase Cas3; Provisional
Probab=94.85 E-value=0.19 Score=64.90 Aligned_cols=76 Identities=12% Similarity=-0.004 Sum_probs=42.9
Q ss_pred CCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHH-HHHHHHhc--cCeE
Q 001510 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA-TEMALRLY--AKHR 629 (1064)
Q Consensus 553 ~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~-~kal~~L~--a~~R 629 (1064)
.+|+|+|.+.+..-.-... ...+ -+..+.=.+||+||+|.+-...... ...+..+. ....
T Consensus 411 api~V~TiDQlL~a~l~~k------h~~l-----------R~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~v 473 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVK------HRFI-----------RGFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSV 473 (878)
T ss_pred CCEEEcCHHHHHHHHHccc------hHHH-----------HHHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcE
Confidence 6899999988765331100 0000 0112334589999999985443333 33333332 3568
Q ss_pred EEEeccCCCCChhhhH
Q 001510 630 WCITGTPIQRKLDDLY 645 (1064)
Q Consensus 630 wlLTGTPiqN~l~DL~ 645 (1064)
++||+|+-..-..+|.
T Consensus 474 IllSATLP~~~r~~L~ 489 (878)
T PRK09694 474 ILLSATLPATLKQKLL 489 (878)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 9999998554333443
No 89
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=94.81 E-value=0.2 Score=64.97 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=28.4
Q ss_pred hcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCC
Q 001510 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1064)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN 612 (1064)
...+|||||+|..|..+..... ..| .....+|+||||++..
T Consensus 414 a~~AdivItNHa~L~~~~~~~~--------------------~il--p~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNP--------------------ELF--PSFRDLIIDEAHHLPD 454 (850)
T ss_pred HhcCCEEEecHHHHHHHhhccc--------------------ccC--CCCCEEEEECcchHHH
Confidence 4568999999999988752100 112 2346899999999864
No 90
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=94.80 E-value=0.049 Score=61.77 Aligned_cols=125 Identities=12% Similarity=0.037 Sum_probs=65.3
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCC
Q 001510 707 EECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786 (1064)
Q Consensus 707 ~e~vv~v~lS~~Qr~lY~~~~~~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP 786 (1064)
.++.+.++|+..|+++|+.+.......+.+.++... ......+.........+-..+.+|+.+|+||
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP 70 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETND-------------SSESIDSLLDESLVQSMELLIENLRLVANHP 70 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTT-------------T--HHHH-------HHHHHHHHHHHHHHH-G
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccC-------------ccccccchhhhhhHHHHHHHHHHHHHhccCc
Confidence 367889999999999999998765555444332110 0000000001122355677788999999999
Q ss_pred CCCCcccccccCCCCCH----------HHHHHHHHHHHHH-hhhhhcchHHHHHhHHHHHHHHHHhhhh
Q 001510 787 QVGSSGLRSLQQSPLSM----------DEILMVLIGKTKI-EGEEALRKLVMALNGLAGIALIEKNLSQ 844 (1064)
Q Consensus 787 ~L~~~~~~~l~~~~~t~----------eelL~~Ll~~~~~-e~~e~lrkvlifsq~la~L~iIe~~l~~ 844 (1064)
+|.-....+.+-..+.+ -.+|..|++.+.. .-.+..-+++|.++....+++||..+-.
T Consensus 71 ~LlvdH~mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llG 139 (297)
T PF11496_consen 71 SLLVDHYMPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLG 139 (297)
T ss_dssp GGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTT
T ss_pred cccccccCccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHcc
Confidence 98543332111111111 2356666665521 1122336888889999999999986654
No 91
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.39 E-value=0.16 Score=62.51 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=86.7
Q ss_pred cCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhccccc------ceEEeccccccCC-------hHHHH
Q 001510 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFW------WRICLDEAQMVES-------NAAAA 617 (1064)
Q Consensus 551 ~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w------~rVIlDEAH~IKN-------~~Sk~ 617 (1064)
-+-.|+..||..|..+.... +.....|+ -..+.| .+||+||+|+.|| ..|++
T Consensus 367 ~krGViFaTYtaLIGEs~~~-----~~kyrtR~----------rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKt 431 (1300)
T KOG1513|consen 367 TKRGVIFATYTALIGESQGK-----GGKYRTRF----------RQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKT 431 (1300)
T ss_pred ccceeEEEeeHhhhhhcccc-----CchHHHHH----------HHHHHHhhhccceeEEehhhhhhcccccccCCCcCcc
Confidence 34579999999998875421 11111111 011223 3799999999999 33677
Q ss_pred HHHHHHhc----cCeEEEEeccCCCCChhhhHhhhhccCCCCCCccchh---hhhhcCCCCCCChhhHHHH--HHHHhhh
Q 001510 618 TEMALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWW---IEVIRDPYENGDVGAMEFT--HKFFKEI 688 (1064)
Q Consensus 618 ~kal~~L~----a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~~~~F---~~~~~~pi~~~~~~~~~~L--~~lL~~~ 688 (1064)
.+++..|+ --+.+--|+|-. .|=.++....+.+.||....| .+.+ ..+++....+++-. --.++..
T Consensus 432 G~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~RLGlWGegtaf~eF~eFi-~AvEkRGvGAMEIVAMDMK~rGm 506 (1300)
T KOG1513|consen 432 GKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVRLGLWGEGTAFPEFEEFI-HAVEKRGVGAMEIVAMDMKLRGM 506 (1300)
T ss_pred cHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhhhccccCCCcCccHHHHH-HHHHhcCCceeeeeehhhhhhhh
Confidence 77777653 344555677633 333444555566666643333 2222 12233222232211 1122222
Q ss_pred heeccccccccCCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 001510 689 MCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC 730 (1064)
Q Consensus 689 mLRRtK~dV~~el~LPpk~e~vv~v~lS~~Qr~lY~~~~~~~ 730 (1064)
.+- .+|.+-.....+..|+||++=++.|+...+-.
T Consensus 507 YiA-------RQLSFkgVsFrieEv~ls~eF~k~Yn~a~~LW 541 (1300)
T KOG1513|consen 507 YIA-------RQLSFKGVSFRIEEVPLSKEFRKVYNRAAELW 541 (1300)
T ss_pred hhh-------hhccccCceEEEEecccCHHHHHHHHHHHHHH
Confidence 222 25667788889999999999999999765543
No 92
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=94.36 E-value=0.4 Score=59.78 Aligned_cols=126 Identities=17% Similarity=0.080 Sum_probs=68.6
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
..++||+|+--+. +|...+-++. .+++.+..|..... ........||++.|-..|.-|+-.+.-..
T Consensus 145 ~~v~VvTptreLA~qdae~~~~l~~~l---Glsv~~i~gg~~~~-------~r~~~y~~dIvygT~~e~~FDyLrd~~~~ 214 (656)
T PRK12898 145 LPVHVITVNDYLAERDAELMRPLYEAL---GLTVGCVVEDQSPD-------ERRAAYGADITYCTNKELVFDYLRDRLAL 214 (656)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHhhc---CCEEEEEeCCCCHH-------HHHHHcCCCEEEECCCchhhhhccccccc
Confidence 4689999997663 6777777776 68887776653211 22233467999999777665543222111
Q ss_pred c--cchhhh---hhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHh
Q 001510 575 E--GDRRFM---RFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 646 (1064)
Q Consensus 575 ~--~~r~~~---r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~s 646 (1064)
. .+.... ++...+. ....+....++++|+||+..+-=- .|..-+++||.|-.....++|.
T Consensus 215 ~~~~~~~~~~~~~l~~~~~-~~~~~v~r~~~~aIvDEvDSiLiD-----------eartpliis~~~~~~~~~~~y~ 279 (656)
T PRK12898 215 GQRASDARLALESLHGRSS-RSTQLLLRGLHFAIVDEADSVLID-----------EARTPLIISAPAKEADEAEVYR 279 (656)
T ss_pred cccccchhhhhhhhccccC-chhhhcccccceeEeecccceeec-----------cCCCceEEECCCCCCchhHHHH
Confidence 0 000000 0000000 112234457889999999876311 2445678888543332234444
No 93
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.12 E-value=0.22 Score=57.24 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=80.5
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
..||++|.- |-.|-...|+.....-++++.+..|...... .......+.+|+|.|-..|...+.....
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~-----q~~~L~kkPhilVaTPGrL~dhl~~Tkg------ 199 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMML-----QANQLSKKPHILVATPGRLWDHLENTKG------ 199 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHH-----HHHHhhcCCCEEEeCcHHHHHHHHhccC------
Confidence 479999986 5568888888886655789998888754321 1334456788999999999987753211
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhccCeE-EEEeccCCCCChhhh
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHR-WCITGTPIQRKLDDL 644 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a~~R-wlLTGTPiqN~l~DL 644 (1064)
+..-.-..+|+|||.++-|.+ -..-+.++.++.+++ ++.|+| +..++..|
T Consensus 200 ---------------f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsAT-Mt~kv~kL 252 (476)
T KOG0330|consen 200 ---------------FSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSAT-MTKKVRKL 252 (476)
T ss_pred ---------------ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEee-cchhhHHH
Confidence 222234568999999998876 566777788876655 556776 33344433
No 94
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=93.91 E-value=0.33 Score=62.10 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=64.9
Q ss_pred cEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 500 ~tLIV~P~SLl----~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
+++||+|+.-+ .+|...+.+++ ++++....|...... .... -..|||+.|-..|.-++-....
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l---GLsV~~i~GG~~~~e------q~~~-y~~DIVygTPgRLgfDyLrd~~--- 203 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL---GLTTGVLVSGSPLEK------RKEI-YQCDVVYGTASEFGFDYLRDNS--- 203 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHHH------HHHH-cCCCEEEECCChhHHHHhhCCC---
Confidence 47899998643 47888888887 588876665432210 1112 2589999998887433211110
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1064)
.......+....+..+|||||..+-- -.|+--+++||.+-.. .++|..+
T Consensus 204 -----------~~~~~~~~vqr~~~~~IIDEADsmLi-----------DEArTPLIISg~~~~~--~~~Y~~~ 252 (970)
T PRK12899 204 -----------IATRKEEQVGRGFYFAIIDEVDSILI-----------DEARTPLIISGPGEKH--NPVYFEL 252 (970)
T ss_pred -----------CCcCHHHhhcccccEEEEechhhhhh-----------hccCCceeeeCCCccc--cHHHHHH
Confidence 00000123345688999999987631 2355567888876433 4444433
No 95
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.79 E-value=0.48 Score=56.20 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=78.1
Q ss_pred CCCcEEEEeCCch----HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCC
Q 001510 497 ATGATLIVCPAPI----LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 572 (1064)
Q Consensus 497 ~~~~tLIV~P~SL----l~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~ 572 (1064)
.+-++||+||+-= +++-...+..|+ ++.|+..-|.-..+. .....-...||||.|-+.|..++.....
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt---~I~~~L~vGGL~lk~-----QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFT---DITVGLAVGGLDLKA-----QEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhc---cceeeeeecCccHHH-----HHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 4568999999853 467778888888 688888877643221 1223335689999999999887754321
Q ss_pred CcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHh-ccCeEEEEeccCCCCChhhhHhh
Q 001510 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-YAKHRWCITGTPIQRKLDDLYGL 647 (1064)
Q Consensus 573 ~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L-~a~~RwlLTGTPiqN~l~DL~sL 647 (1064)
+.--.-.++|+|||.++-... .+....+... +.+..++.|+| +...+.||-++
T Consensus 323 ---------------------f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSAT-MteeVkdL~sl 378 (691)
T KOG0338|consen 323 ---------------------FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSAT-MTEEVKDLASL 378 (691)
T ss_pred ---------------------ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhh-hHHHHHHHHHh
Confidence 222334579999999874332 2222333322 24456888998 44557777665
No 96
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=93.65 E-value=0.25 Score=63.43 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=58.5
Q ss_pred CcEEEEeCCchH-HHHHHHHHhcCCC-CCCeEEE-EcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 499 GATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k~~~~-~~L~V~v-y~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
+.++|+.|.-++ .|-.+.+.+.... -...|.. +.+... .-.+..|+++|...|.+.+...
T Consensus 46 ~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~------------~s~~t~I~v~T~G~Llr~l~~d----- 108 (819)
T TIGR01970 46 GKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK------------VSRRTRLEVVTEGILTRMIQDD----- 108 (819)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc------------cCCCCcEEEECCcHHHHHHhhC-----
Confidence 368999998764 4555555433321 0122211 111111 1123579999999988765321
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccc-cCChHH--HHHHHH-HHhcc-CeEEEEeccCCCCChhhh
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM-VESNAA--AATEMA-LRLYA-KHRWCITGTPIQRKLDDL 644 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~-IKN~~S--k~~kal-~~L~a-~~RwlLTGTPiqN~l~DL 644 (1064)
..--....||+||+|. .-+..- ...+.+ ..++. ...+++|+|.-...+.++
T Consensus 109 ------------------~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~ 164 (819)
T TIGR01970 109 ------------------PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSL 164 (819)
T ss_pred ------------------cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHH
Confidence 1123467999999994 444331 112222 23433 356888999765444433
No 97
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.65 E-value=0.41 Score=58.64 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=72.9
Q ss_pred EEEEeCCc-hHHHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhhc-CCCEEEEehHHHhhhcccCCCCcccc
Q 001510 501 TLIVCPAP-ILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 501 tLIV~P~S-Ll~QW~~Ei~k~~~~~-~L~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.||++|+- |..|=.+++.++.... .+++..+.|...... ....+. ..||||.|-..+...+..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~------q~~~l~~~~~ivVaTPGRllD~i~~-------- 167 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK------QIEALKRGVDIVVATPGRLLDLIKR-------- 167 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH------HHHHHhcCCCEEEECccHHHHHHHc--------
Confidence 99999996 5579999998887643 577766666533211 122333 399999999998865532
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhcc-CeEEEEeccCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPi 637 (1064)
..|..-.-..+|+|||-++-+.. ....+.+..++. ...++.|+|--
T Consensus 168 --------------~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~ 216 (513)
T COG0513 168 --------------GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMP 216 (513)
T ss_pred --------------CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCC
Confidence 12444456789999999987664 344455555554 55677788843
No 98
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.02 E-value=0.52 Score=58.75 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=29.1
Q ss_pred hcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH
Q 001510 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1064)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~ 614 (1064)
...+|||||++..|..+.... . ..| -..+.||+||||.+....
T Consensus 180 a~~AdivItNHalL~~~~~~~----------------~----~iL--P~~~~lIiDEAH~L~d~A 222 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDK----------------W----GLL--PQPDILIVDEAHLFEQNI 222 (636)
T ss_pred cccCCEEEECHHHHHHHhhhh----------------c----CCC--CCCCEEEEeCCcchHHHH
Confidence 467799999999888643110 0 112 236899999999996543
No 99
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=92.92 E-value=0.43 Score=61.45 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=59.5
Q ss_pred CcEEEEeCCchH-HHHHHHHHhcCCC-CCCeEEE-EcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 499 GATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k~~~~-~~L~V~v-y~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
+.+||++|.-++ .|-.+.+.+.... -...|.. +.|.... -....|+++|.+.+.+.+...
T Consensus 49 ~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------------~~~t~I~v~T~G~Llr~l~~d----- 111 (812)
T PRK11664 49 GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------------GPNTRLEVVTEGILTRMIQRD----- 111 (812)
T ss_pred CeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------------CCCCcEEEEChhHHHHHHhhC-----
Confidence 368999998764 4555555443321 0122221 1121111 123468999999987765321
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccc-cCChHHH---HHHHHHHhcc-CeEEEEeccCCCCChhhhH
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM-VESNAAA---ATEMALRLYA-KHRWCITGTPIQRKLDDLY 645 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~-IKN~~Sk---~~kal~~L~a-~~RwlLTGTPiqN~l~DL~ 645 (1064)
..--.+..||+||+|. .-+.+-. ..+....++. ...+++|+|.-...+.+++
T Consensus 112 ------------------~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l~~~~ 168 (812)
T PRK11664 112 ------------------PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLL 168 (812)
T ss_pred ------------------CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHHHHhc
Confidence 1223578999999996 2222211 1122223433 3568999998654444433
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=92.69 E-value=0.75 Score=58.79 Aligned_cols=131 Identities=15% Similarity=0.017 Sum_probs=65.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
...+.|.|. +++.+=.+.+..++.........+||.......... .. ..-+.++++++.....-..... ..
T Consensus 247 ~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~----~~--~~~~~~~~~ds~~~~~~~~~~~--~~ 318 (733)
T COG1203 247 SRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEP----DQ--DILLTLTTNDSYKKLLLALIVV--TP 318 (733)
T ss_pred ceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhcc----cc--ccceeEEecccccceecccccc--CH
Confidence 456777776 456777888887764222222213554332211000 00 1125566666554433211100 00
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCCh-HH-HHHHHHHHhc--cCeEEEEeccCCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AA-AATEMALRLY--AKHRWCITGTPIQ 638 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~-~S-k~~kal~~L~--a~~RwlLTGTPiq 638 (1064)
-........+...+. +..+.-..||+||+|.+-.. .. ....++..+. ....+++|||+-+
T Consensus 319 ~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 319 IQILIFSVKGFKFEF-LALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred hHhhhhhccccchHH-HHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 000111112222333 66677889999999998766 32 2333334443 6678999999744
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.66 E-value=0.25 Score=62.76 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=60.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCC-CeEEE-EcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRPGS-LKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~-L~V~v-y~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
+.++||+|++ |+.|=.+-|+++..... +++.+ ||+.-.... .......-.-++|||+|||-..+.+..+
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~e-kee~le~i~~gdfdIlitTs~FL~k~~e------- 197 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKE-KEEALERIESGDFDILITTSQFLSKRFE------- 197 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHH-HHHHHHHHhcCCccEEEEeHHHHHhhHH-------
Confidence 5789999986 56899999999986333 55544 898733211 0111122334579999999999988653
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEecccccc
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~I 610 (1064)
.|.+.+|+.|++|-+..+
T Consensus 198 -----------------~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 198 -----------------ELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred -----------------HhcccCCCEEEEccHHHH
Confidence 467788999999987753
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=92.13 E-value=2 Score=49.07 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=26.5
Q ss_pred ccceEEeccccccCChH-HHHHHHHHHh--ccCeEEEEeccCCC
Q 001510 598 FWWRICLDEAQMVESNA-AAATEMALRL--YAKHRWCITGTPIQ 638 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~-Sk~~kal~~L--~a~~RwlLTGTPiq 638 (1064)
.||.+|+||....-=.. -.+..++.+- .-...+.||+||-.
T Consensus 202 aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 202 AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred hccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 58999999998753221 2233344432 24468999999974
No 103
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.96 E-value=0.25 Score=62.76 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=41.1
Q ss_pred HHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhh
Q 001510 515 AEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL 594 (1064)
Q Consensus 515 ~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L 594 (1064)
+|+.++.. ...++-|... ......+||||.+|..|-...- ++ ..-
T Consensus 172 EdL~~~g~--~~~~CPY~~s------------r~~~~~advIi~pYnyl~dp~~---------r~------------~~~ 216 (705)
T TIGR00604 172 EDLVEYGE--LLGLCPYFAT------------RKMLPFANIVLLPYQYLLDPKI---------RS------------AVS 216 (705)
T ss_pred HHHHHhcc--cCCCCccHHH------------HHhhhcCCEEEechHHhcCHHH---------HH------------Hhh
Confidence 45666554 5667777763 4456789999999999864321 00 011
Q ss_pred cccccceEEeccccccCCh
Q 001510 595 TRIFWWRICLDEAQMVESN 613 (1064)
Q Consensus 595 ~~i~w~rVIlDEAH~IKN~ 613 (1064)
..+.-..||+||||+|-+.
T Consensus 217 ~~l~~~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 217 IELKDSIVIFDEAHNLDNV 235 (705)
T ss_pred cccccCEEEEECccchHHH
Confidence 2234478999999999653
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=91.79 E-value=0.47 Score=60.65 Aligned_cols=102 Identities=21% Similarity=0.138 Sum_probs=61.5
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
..++||+|+--+ .+|...+.+++ ++++.+..|..... .....-..||++.|-..|.-|+-...-.
T Consensus 124 ~~V~VvTpn~yLA~qd~e~m~~l~~~l---GLtv~~i~gg~~~~-------~r~~~y~~dIvygT~grlgfDyLrd~~~- 192 (896)
T PRK13104 124 RGVHIVTVNDYLAKRDSQWMKPIYEFL---GLTVGVIYPDMSHK-------EKQEAYKADIVYGTNNEYGFDYLRDNMA- 192 (896)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccc---CceEEEEeCCCCHH-------HHHHHhCCCEEEECChhhhHHHHhcCCc-
Confidence 358999999754 36888888887 68888777653221 1122235899999988874433111000
Q ss_pred ccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccC
Q 001510 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1064)
Q Consensus 575 ~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1064)
+ .......-...++|||||+.+--- .|+.-+++||.+
T Consensus 193 ------------~--~~~~~v~r~l~~~IvDEaDsiLID-----------eArtPLIISg~~ 229 (896)
T PRK13104 193 ------------F--SLTDKVQRELNFAIVDEVDSILID-----------EARTPLIISGAA 229 (896)
T ss_pred ------------c--chHhhhccccceEEeccHhhhhhh-----------ccCCceeeeCCC
Confidence 0 001123346789999999986321 244557778754
No 105
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=91.40 E-value=0.56 Score=59.28 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCc
Q 001510 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1064)
Q Consensus 511 ~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~ 590 (1064)
.|=-++|+..+. ... +..|.. .-..++..+|+|-+.||+.+..-.+
T Consensus 354 NQKfRDFk~tF~--Dvg--LlTGDv------------qinPeAsCLIMTTEILRsMLYrgad------------------ 399 (1248)
T KOG0947|consen 354 NQKFRDFKETFG--DVG--LLTGDV------------QINPEASCLIMTTEILRSMLYRGAD------------------ 399 (1248)
T ss_pred cchHHHHHHhcc--ccc--eeecce------------eeCCCcceEeehHHHHHHHHhcccc------------------
Confidence 355566666553 222 566643 3335678999999999998754221
Q ss_pred chhhcccccceEEeccccccCChH-HHHHHHH-HHhcc-CeEEEEecc
Q 001510 591 PTLLTRIFWWRICLDEAQMVESNA-AAATEMA-LRLYA-KHRWCITGT 635 (1064)
Q Consensus 591 ~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~kal-~~L~a-~~RwlLTGT 635 (1064)
.+..+ ..||+||.|+|-+.. .-.+.-+ -.|+. ..-++||+|
T Consensus 400 --liRDv--E~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 400 --LIRDV--EFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred --hhhcc--ceEEEeeeeecccccccccceeeeeeccccceEEEEecc
Confidence 23344 459999999996543 2222222 22322 234566666
No 106
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=91.06 E-value=0.41 Score=58.79 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
.|.||||.|. ||+..=.+.+... ++++...++.-... ..............+++..+-+.+....-
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~-e~~~v~~~l~~g~~klLyisPErl~~~~f-------- 123 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSRE-ERQQVLNQLKSGQLKLLYISPERLMSPRF-------- 123 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHH-HHHHHHHHHhcCceeEEEECchhhcChHH--------
Confidence 5899999997 7776666666654 46666555542211 11111222333458899999998876421
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1064)
...|....-.++++||||.|-... .........+.-.-+++||+|--+.-..|+-..|.
T Consensus 124 --------------~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~ 189 (590)
T COG0514 124 --------------LELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLG 189 (590)
T ss_pred --------------HHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhc
Confidence 134667788899999999985432 33444444455557999999988888888888877
Q ss_pred ccCCC
Q 001510 650 FLKSS 654 (1064)
Q Consensus 650 FL~p~ 654 (1064)
.=.+.
T Consensus 190 l~~~~ 194 (590)
T COG0514 190 LQDAN 194 (590)
T ss_pred CCCcc
Confidence 65543
No 107
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.78 E-value=0.92 Score=54.14 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=59.0
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
...||++|+. |..|=-+|.+++.-...++..+.+|....+.. ...-...+||+++|-..|..-++.-.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q-----~~~~~~gcdIlvaTpGrL~d~~e~g~------ 221 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQ-----LRFIKRGCDILVATPGRLKDLIERGK------ 221 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhh-----hhhhccCccEEEecCchhhhhhhcce------
Confidence 4689999985 78999999999987667777666665433221 22334679999999998876543100
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IK 611 (1064)
-.|..+. ++|||||.++-
T Consensus 222 --------------i~l~~~k--~~vLDEADrMl 239 (482)
T KOG0335|consen 222 --------------ISLDNCK--FLVLDEADRML 239 (482)
T ss_pred --------------eehhhCc--EEEecchHHhh
Confidence 1133333 89999999763
No 108
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=90.41 E-value=1.2 Score=57.89 Aligned_cols=105 Identities=11% Similarity=0.222 Sum_probs=65.9
Q ss_pred cEEEEeC-CchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHH---HhhhcccCCCCcc
Q 001510 500 ATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDV---LKEDLSHDSDRHE 575 (1064)
Q Consensus 500 ~tLIV~P-~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYet---L~~d~~~~~~~~~ 575 (1064)
...-|+| .+|+..|...|.++..+=+++|.-..|.... ....+....|+++|-+- +.+. .
T Consensus 366 KIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l--------~~~qieeTqVIV~TPEK~DiITRk--------~ 429 (1674)
T KOG0951|consen 366 KIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL--------GKEQIEETQVIVTTPEKWDIITRK--------S 429 (1674)
T ss_pred eEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc--------hhhhhhcceeEEeccchhhhhhcc--------c
Confidence 5666777 5889999999999998555666666665443 34556667788887543 3332 1
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEecccccc---CChH--HHHHHHHHHhc----cCeEEEEecc
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV---ESNA--AAATEMALRLY----AKHRWCITGT 635 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~I---KN~~--Sk~~kal~~L~----a~~RwlLTGT 635 (1064)
+++... --...+|+||.|++ +.+. |-.++..++.. ..+-.+||+|
T Consensus 430 gdraY~---------------qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSAT 483 (1674)
T KOG0951|consen 430 GDRAYE---------------QLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSAT 483 (1674)
T ss_pred CchhHH---------------HHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeeccc
Confidence 222110 12456899999999 3333 34445555442 3456789999
No 109
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=90.35 E-value=0.097 Score=43.11 Aligned_cols=30 Identities=40% Similarity=1.035 Sum_probs=23.8
Q ss_pred hcccccccccccccccccccccccccccccCcCC
Q 001510 417 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1064)
Q Consensus 417 ~c~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~ 450 (1064)
+|+. ....+.+|+|+.|..|.|..|++...
T Consensus 4 vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 4 VCGQ----SDDDGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp TTTS----SCTTSSEEEBSTTSCEEETTTSTSSH
T ss_pred CCCC----cCCCCCeEEcCCCChhhCcccCCCCh
Confidence 5665 23457899999999999999998654
No 110
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=89.92 E-value=1.7 Score=56.52 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=46.2
Q ss_pred hcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH-HHHHHHHH-Hhc-c
Q 001510 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLY-A 626 (1064)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~kal~-~L~-a 626 (1064)
..++.++++|-+.|++.+.... ..+.. -..||+||.|.|.... .-.++-+- .++ .
T Consensus 203 N~~A~clvMTTEILRnMlyrg~--------------------~~~~~--i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 203 NPDAPCLVMTTEILRNMLYRGS--------------------ESLRD--IEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred CCCCceEEeeHHHHHHHhccCc--------------------ccccc--cceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 3567788888899998764321 11222 3469999999998766 33444333 333 3
Q ss_pred CeEEEEeccCCCCChhhhHhhhh
Q 001510 627 KHRWCITGTPIQRKLDDLYGLLR 649 (1064)
Q Consensus 627 ~~RwlLTGTPiqN~l~DL~sLL~ 649 (1064)
..-++||+| +. |..|+-..+.
T Consensus 261 v~~v~LSAT-v~-N~~EF~~Wi~ 281 (1041)
T COG4581 261 VRFVFLSAT-VP-NAEEFAEWIQ 281 (1041)
T ss_pred CcEEEEeCC-CC-CHHHHHHHHH
Confidence 478899999 22 3444444333
No 111
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=89.76 E-value=0.77 Score=56.02 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=27.8
Q ss_pred CCcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcc
Q 001510 498 TGATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNS 537 (1064)
Q Consensus 498 ~~~tLIV~P~SL-l~QW~~Ei~k~~~~~~L~V~vy~G~~~~ 537 (1064)
.+|+||++|+++ +.|-...|.+- .|+|+.....+++
T Consensus 454 ~~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 454 AGPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLCAKSRE 490 (935)
T ss_pred CCceEEEcccchhHHHHHHHHHhc----CceEeeeehhhhh
Confidence 379999999987 68988888774 5888877665443
No 112
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=89.60 E-value=0.34 Score=52.14 Aligned_cols=44 Identities=27% Similarity=0.199 Sum_probs=22.3
Q ss_pred cccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChh
Q 001510 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLD 642 (1064)
Q Consensus 597 i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~ 642 (1064)
+....||+||||++.. ...-..+.++....+++++|=|.|.++.
T Consensus 118 ~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTP--EELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-SEEEEE-SGGG--H--HHHHHHHTTB-TT-EEEEEE--------
T ss_pred ccceEEEEecccCCCH--HHHHHHHcccCCCcEEEEecCceeecCC
Confidence 3457999999998742 3344445567778999999999887553
No 113
>PRK10536 hypothetical protein; Provisional
Probab=88.94 E-value=1.8 Score=48.24 Aligned_cols=41 Identities=29% Similarity=0.187 Sum_probs=33.3
Q ss_pred cceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCCh
Q 001510 599 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 641 (1064)
Q Consensus 599 w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l 641 (1064)
-..|||||||++.- ......+.++....+++++|-|-|.++
T Consensus 177 ~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 177 NAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 46899999999853 455566678889999999999988654
No 114
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=88.78 E-value=1.1 Score=57.29 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=62.6
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
+.+-||+|+-.+. +|...+-+++ +++|.+..+..... .....-.+||+..|...|.-|+-.+.-.
T Consensus 124 ~~VhvvT~ndyLA~RD~e~m~~l~~~l---Gl~v~~i~~~~~~~-------err~~Y~~dI~YGT~~e~gFDYLrD~~~- 192 (913)
T PRK13103 124 KGVHVVTVNDYLARRDANWMRPLYEFL---GLSVGIVTPFQPPE-------EKRAAYAADITYGTNNEFGFDYLRDNMA- 192 (913)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhccc---CCEEEEECCCCCHH-------HHHHHhcCCEEEEcccccccchhhccce-
Confidence 4678899998763 6888887777 68998887753321 2223344899999988874332111000
Q ss_pred ccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEecc
Q 001510 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGT 635 (1064)
Q Consensus 575 ~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGT 635 (1064)
+ .........+.++|+||+|.|-=- .|+.-+++||.
T Consensus 193 ------------~--~~~~~vqr~l~~aIVDEvDsiLID-----------EArtPLIISg~ 228 (913)
T PRK13103 193 ------------F--SLDDKFQRELNFAVIDEVDSILID-----------EARTPLIISGQ 228 (913)
T ss_pred ------------e--chhhhcccccceeEechhhheecc-----------ccCCceeecCC
Confidence 0 002234567889999999987321 24445777775
No 115
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=88.76 E-value=2.6 Score=56.36 Aligned_cols=61 Identities=18% Similarity=0.080 Sum_probs=39.9
Q ss_pred CCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEecccc-ccCChHHHHHHHHHHh----cc
Q 001510 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ-MVESNAAAATEMALRL----YA 626 (1064)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH-~IKN~~Sk~~kal~~L----~a 626 (1064)
...|+++|...|..++... ++ --.++.||||||| +.-|..-... .++.+ +.
T Consensus 163 ~t~I~v~TpG~LL~~l~~d----------------------~~-Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpd 218 (1294)
T PRK11131 163 NTMVKLMTDGILLAEIQQD----------------------RL-LMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPD 218 (1294)
T ss_pred CCCEEEEChHHHHHHHhcC----------------------Cc-cccCcEEEecCccccccccchHHH-HHHHhhhcCCC
Confidence 5679999999998876421 11 2357899999999 4555443322 23332 22
Q ss_pred CeEEEEeccC
Q 001510 627 KHRWCITGTP 636 (1064)
Q Consensus 627 ~~RwlLTGTP 636 (1064)
...+++|+|.
T Consensus 219 lKvILmSATi 228 (1294)
T PRK11131 219 LKVIITSATI 228 (1294)
T ss_pred ceEEEeeCCC
Confidence 4678999997
No 116
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=88.72 E-value=1.1 Score=53.84 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=74.4
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
..|||.|+- |-.|--+-+.+......+..-..-|..... .....+...+|+|+|-+.|..+++...
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k------~E~eRi~~mNILVCTPGRLLQHmde~~------- 209 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK------FELERISQMNILVCTPGRLLQHMDENP------- 209 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH------HHHHhhhcCCeEEechHHHHHHhhhcC-------
Confidence 579999986 445655555544322245554555544332 245566788999999999998875421
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChH-HHHH-HHHHHhc-cCeEEEEeccCCCCChhhhHh
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAAT-EMALRLY-AKHRWCITGTPIQRKLDDLYG 646 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~-kal~~L~-a~~RwlLTGTPiqN~l~DL~s 646 (1064)
.|..-.-.++|||||.++-... ..+. ..+..|+ .+..++.|+||..+ +.||.-
T Consensus 210 --------------~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~s-vkdLaR 265 (758)
T KOG0343|consen 210 --------------NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKS-VKDLAR 265 (758)
T ss_pred --------------CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchh-HHHHHH
Confidence 2344456789999999976544 2222 2334454 45678899998654 556544
No 117
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=88.60 E-value=1.2 Score=55.95 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=65.0
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcC-----CCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhh---
Q 001510 499 GATLIVCPAPILA----QWDAEITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKED--- 566 (1064)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~-----~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d--- 566 (1064)
..++||||+-.+. +=-+++..|+ ..-.+..++|...... .....-....|+|.+.+.+.++
T Consensus 105 ~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~-------~~~~~~~~~~vLl~~~~Afnk~~in 177 (985)
T COG3587 105 FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEK-------FKFKSNNKPCVLLIFVSAFNKEEIN 177 (985)
T ss_pred eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHH-------HhhccCCCceEEEEehhhhcccccc
Confidence 3689999985432 2234444444 2235667777521110 0122223456888888888776
Q ss_pred cccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEecc
Q 001510 567 LSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGT 635 (1064)
Q Consensus 567 ~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGT 635 (1064)
..-...... ....-++.-+..+ ..|... =-.||+||-|++... .+++.++..|+...-+=-.+|
T Consensus 178 an~iN~~s~--~~~~~~~~~~spv-d~la~~-rPIvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 178 ANMINSESM--ENTNLFNGATSPV-DALASM-RPIVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGAT 241 (985)
T ss_pred ccccchhhh--cccCccccccCHH-HHHHhc-CCEEEecChhhcccc-hHHHHHHHhhCceEEEEeccc
Confidence 211100000 0000000000000 112222 236999999999865 788999999988776666666
No 118
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.55 E-value=2 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=18.9
Q ss_pred cceeecCCCcchHHHHHHHHHHh
Q 001510 359 GGILADEMGLGKTVELLACIFAH 381 (1064)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~~ 381 (1064)
.|+|-+-.|.|||+-.|+-.++.
T Consensus 42 ~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 42 NGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred hhhccCCCCCCccHHHHHHHHHH
Confidence 58888899999999988766654
No 119
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=87.53 E-value=2.5 Score=54.23 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=67.4
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
+.+.||+|+--+ ..|...+.+|. ++.|....+.... ......-.+||+..|-..|.-|+-.+.-.
T Consensus 124 ~~VhIvT~ndyLA~RD~e~m~~l~~~l---Glsv~~i~~~~~~-------~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~- 192 (908)
T PRK13107 124 KGVHVITVNDYLARRDAENNRPLFEFL---GLTVGINVAGLGQ-------QEKKAAYNADITYGTNNEFGFDYLRDNMA- 192 (908)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhc---CCeEEEecCCCCH-------HHHHhcCCCCeEEeCCCcccchhhhccCc-
Confidence 458999998654 47999999998 6888776554221 01122225789998877664443211100
Q ss_pred ccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 001510 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1064)
Q Consensus 575 ~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1064)
..+..+....+..+|+||+..+-.- .|+.-+++||.+ ... .++|..+
T Consensus 193 --------------~~~~~~vqr~~~~aIvDEvDsiLiD-----------EArtPLIISg~~-~~~-~~~y~~~ 239 (908)
T PRK13107 193 --------------FSPQERVQRPLHYALIDEVDSILID-----------EARTPLIISGAA-EDS-SELYIKI 239 (908)
T ss_pred --------------cchhhhhccccceeeecchhhhccc-----------cCCCceeecCCC-ccc-hHHHHHH
Confidence 0012234567889999999876432 245567888854 333 4555543
No 120
>PRK04296 thymidine kinase; Provisional
Probab=87.17 E-value=3.7 Score=43.53 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=22.9
Q ss_pred ccceEEeccccccCChHHHHHHHHHHhc-cCeEEEEecc
Q 001510 598 FWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGT 635 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGT 635 (1064)
.+++||+||+|.+.. .+....+..+. ....+++||-
T Consensus 78 ~~dvviIDEaq~l~~--~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 78 KIDCVLIDEAQFLDK--EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCEEEEEccccCCH--HHHHHHHHHHHHcCCeEEEEec
Confidence 578999999999843 23444444433 4456677664
No 121
>KOG4284 consensus DEAD box protein [Transcription]
Probab=86.40 E-value=0.95 Score=55.09 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=79.3
Q ss_pred cEEEEeCCchH-HHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 500 ATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 500 ~tLIV~P~SLl-~QW~~Ei~k~~~~-~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
-.+||+|+-=+ -|-.+-|.+.++. .++++.+|-|...... +...+.+..|+|-|-+.+...+..
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~------d~~rlk~~rIvIGtPGRi~qL~el-------- 160 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKL------DLIRLKQTRIVIGTPGRIAQLVEL-------- 160 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhh------hhhhhhhceEEecCchHHHHHHHh--------
Confidence 47899998755 4766666666541 3688999999765432 556677888999999988775532
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChHH---HHHHHHHHhc-cCeEEEEeccCCCCChhhhH
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA---AATEMALRLY-AKHRWCITGTPIQRKLDDLY 645 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~S---k~~kal~~L~-a~~RwlLTGTPiqN~l~DL~ 645 (1064)
..+..-+-++.|||||..+-...| .....+..|+ .+..+++|+|=-+| |+++.
T Consensus 161 --------------~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ldn~L 217 (980)
T KOG4284|consen 161 --------------GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-LDNLL 217 (980)
T ss_pred --------------cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-HHHHH
Confidence 123444567899999999865443 3444555665 45678899995444 55443
No 122
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=85.80 E-value=2.2 Score=54.59 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=65.3
Q ss_pred cEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 500 ATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 500 ~tLIV~P~SLl~----QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
.+-||+|+..+. +|...+-+++ ++++.+..|..... .....-..||++.|...|.-|+-.+...
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~L---Glsv~~i~~~~~~~-------er~~~y~~dI~ygT~~elgfDyLrd~~~-- 191 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFL---GLSVGVILSGMSPE-------ERREAYAADITYGTNNEFGFDYLRDNMV-- 191 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhc---CCeEEEEcCCCCHH-------HHHHhcCCCeEEECCcchhhhhhhcccc--
Confidence 355999997663 5888887777 68888877753321 1112234899999988885543211100
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1064)
+ ....+..-.+.++|||||..+-=- .|+.-+++||.+-. ..++|..+
T Consensus 192 -----------~--~~~~~~~r~~~~aIvDEaDsiLID-----------eArtpLiiSg~~~~--~~~~y~~~ 238 (830)
T PRK12904 192 -----------F--SLEERVQRGLNYAIVDEVDSILID-----------EARTPLIISGPAED--SSELYKRA 238 (830)
T ss_pred -----------c--chhhhcccccceEEEechhhheec-----------cCCCceeeECCCCc--ccHHHHHH
Confidence 0 012234456788999999876311 24445777776432 23455443
No 123
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=85.28 E-value=3.7 Score=47.82 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.1
Q ss_pred cccccceEEeccccccCC
Q 001510 595 TRIFWWRICLDEAQMVES 612 (1064)
Q Consensus 595 ~~i~w~rVIlDEAH~IKN 612 (1064)
..-.++.||+||||++..
T Consensus 80 ~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred cCCcCCEEEEehhHhhhh
Confidence 345689999999999986
No 124
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.42 E-value=3.4 Score=52.13 Aligned_cols=107 Identities=7% Similarity=-0.081 Sum_probs=65.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+||++|. ++..|+..-|+..++ .-.|.+||..-........+ .....++.+|||=|...+-.
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w-~~~~~G~~~IViGtRSAvFa------------ 253 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW-LAVLRGQARVVVGTRSAVFA------------ 253 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH-HHHhCCCCcEEEEcceeEEe------------
Confidence 579999997 688999999999985 46788899864322111111 12234557799887765432
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccc--cCChHHHH--HHHHH----HhccCeEEEEeccCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAA--TEMAL----RLYAKHRWCITGTPI 637 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~--IKN~~Sk~--~kal~----~L~a~~RwlLTGTPi 637 (1064)
|+. +..+||+||=|- .|...+.. ++-+. .+..-.-++-|+||-
T Consensus 254 ---------------P~~--~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 254 ---------------PVE--DLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred ---------------ccC--CCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 222 347899999885 44433221 11111 233445666799995
No 125
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=83.84 E-value=0.84 Score=47.49 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=28.5
Q ss_pred hhhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhh--cccccceEEeccccccCC
Q 001510 547 ISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL--TRIFWWRICLDEAQMVES 612 (1064)
Q Consensus 547 ~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L--~~i~w~rVIlDEAH~IKN 612 (1064)
......+||||++|..|-..... ..+ ....-..||+||||+|.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~----------------------~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIR----------------------KSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHH----------------------HHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHH----------------------hhhccccccCcEEEEecccchHH
Confidence 34456799999999998865311 111 223446899999999964
No 126
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=82.23 E-value=16 Score=38.91 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=24.7
Q ss_pred ccceEEeccccccCChHHHHHHHHHHhcc-CeEEEEeccCCC
Q 001510 598 FWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQ 638 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~Sk~~kal~~L~a-~~RwlLTGTPiq 638 (1064)
..++||+|||.++.+. .....+..+.. ..++++.|-|-|
T Consensus 93 ~~~vliVDEasmv~~~--~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSR--QLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp STSEEEESSGGG-BHH--HHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred cccEEEEecccccCHH--HHHHHHHHHHhcCCEEEEECCcch
Confidence 3469999999999643 33444444443 679999999876
No 127
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=80.95 E-value=5.8 Score=53.36 Aligned_cols=69 Identities=14% Similarity=0.011 Sum_probs=41.5
Q ss_pred CCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEecccc-ccCChHHHHH--HHHHHh-ccC
Q 001510 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ-MVESNAAAAT--EMALRL-YAK 627 (1064)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH-~IKN~~Sk~~--kal~~L-~a~ 627 (1064)
+..|+++|.+.|.+++..+ ++ --.++.||+||+| +.-|..-... +.+... ..-
T Consensus 156 ~T~I~~~TdGiLLr~l~~d----------------------~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdL 212 (1283)
T TIGR01967 156 NTLVKLMTDGILLAETQQD----------------------RF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDL 212 (1283)
T ss_pred CceeeeccccHHHHHhhhC----------------------cc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCC
Confidence 4569999999998876421 11 2357899999999 4555443221 222222 234
Q ss_pred eEEEEeccCCCCChhh
Q 001510 628 HRWCITGTPIQRKLDD 643 (1064)
Q Consensus 628 ~RwlLTGTPiqN~l~D 643 (1064)
..+++|+|.-...+.+
T Consensus 213 KlIlmSATld~~~fa~ 228 (1283)
T TIGR01967 213 KIIITSATIDPERFSR 228 (1283)
T ss_pred eEEEEeCCcCHHHHHH
Confidence 5788999974333333
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=80.90 E-value=5.9 Score=49.99 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=63.0
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
+.+-||+|+..+. +|...+-+++ +++|....+..... .....-.+||+-+|-..|.-|+-.+.-..
T Consensus 120 ~~VhvvT~NdyLA~RDae~m~~ly~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~~ 189 (764)
T PRK12326 120 RRVHVITVNDYLARRDAEWMGPLYEAL---GLTVGWITEESTPE-------ERRAAYACDVTYASVNEIGFDVLRDQLVT 189 (764)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHhc---CCEEEEECCCCCHH-------HHHHHHcCCCEEcCCcccccccchhhhcc
Confidence 5688999998773 7888888888 68998877653321 22333467887776555544432111000
Q ss_pred ccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccC
Q 001510 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1064)
Q Consensus 575 ~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1064)
.+.......++.+|+||+..+-=- .|+.-+++||.+
T Consensus 190 ---------------~~~~~v~R~~~faIVDEvDSiLID-----------eArtPLiISg~~ 225 (764)
T PRK12326 190 ---------------DVADLVSPNPDVAIIDEADSVLVD-----------EALVPLVLAGST 225 (764)
T ss_pred ---------------ChHhhcCCccceeeecchhhheec-----------cccCceeeeCCC
Confidence 012234456889999999865311 356678888865
No 129
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=80.83 E-value=14 Score=46.62 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=27.9
Q ss_pred hhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCC
Q 001510 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1064)
Q Consensus 593 ~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1064)
.|....|+.||+|||-.+-.+.+ +-.|....+++|-|=|.|
T Consensus 356 ~l~~~~Fd~vIIDEAsQ~~ep~~-----lipl~~~~~~vLvGD~~Q 396 (637)
T TIGR00376 356 GLKGWEFDVAVIDEASQAMEPSC-----LIPLLKARKLILAGDHKQ 396 (637)
T ss_pred hhccCCCCEEEEECccccchHHH-----HHHHhhCCeEEEecChhh
Confidence 46778999999999966654432 222222348899898877
No 130
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=79.68 E-value=7.3 Score=47.73 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=25.5
Q ss_pred hcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCC
Q 001510 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1064)
Q Consensus 594 L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1064)
+.+..|+.||+|||-..--+ +.+-. +-...+++|.|-|.|
T Consensus 354 ~~~~~fD~vIIDEaaQamE~--~cWip---vlk~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 354 LRKRTFDLVIIDEAAQAMEP--QCWIP---VLKGKKFILAGDPKQ 393 (649)
T ss_pred hcccCCCEEEEehhhhhccc--hhhhH---HhcCCceEEeCCccc
Confidence 44567999999998543222 12222 223349999999987
No 132
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=79.55 E-value=6.5 Score=45.86 Aligned_cols=107 Identities=19% Similarity=0.326 Sum_probs=73.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh-cCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
-.+||..|.. |..|=+-|..+..-.+.-.+++|.|.++.. ...++ ...+|+|.|-..|-.-...
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e-------qie~lkrgveiiiatPgrlndL~~~------- 360 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-------QIEDLKRGVEIIIATPGRLNDLQMD------- 360 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh-------HHHHHhcCceEEeeCCchHhhhhhc-------
Confidence 4689999986 456888888888777778899999876542 33333 4688999998877653210
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhccCeEEEEec
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWCITG 634 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a~~RwlLTG 634 (1064)
.....-.--++|||||.++-... -+..+.+..++.++-.+||-
T Consensus 361 ---------------n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 361 ---------------NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred ---------------CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeec
Confidence 11222234579999999876543 67777777887776666553
No 133
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=79.29 E-value=1.1 Score=50.71 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=29.7
Q ss_pred hhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCC
Q 001510 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1064)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN 612 (1064)
.....+||||++|..|..+.... . .-....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~---------~------------~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 207 KAIEFANVVVLPYQYLLDPKIRQ---------A------------LSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHH---------H------------hcccccccEEEEeCccChHH
Confidence 44578999999999998653110 0 00012467899999999863
No 134
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=79.29 E-value=1.1 Score=50.71 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=29.7
Q ss_pred hhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCC
Q 001510 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1064)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN 612 (1064)
.....+||||++|..|..+.... . .-....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~---------~------------~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 207 KAIEFANVVVLPYQYLLDPKIRQ---------A------------LSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHH---------H------------hcccccccEEEEeCccChHH
Confidence 44578999999999998653110 0 00012467899999999863
No 135
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=79.12 E-value=3 Score=49.93 Aligned_cols=28 Identities=36% Similarity=0.347 Sum_probs=22.9
Q ss_pred cceeecCCCcchHHHHHHHHHHhcCCCC
Q 001510 359 GGILADEMGLGKTVELLACIFAHRKPAS 386 (1064)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~~~~~~~ 386 (1064)
-|+|-.--|.|||+..|+||.+.+...+
T Consensus 37 h~llEMPSGTGKTvsLLSli~aYq~~~p 64 (755)
T KOG1131|consen 37 HCLLEMPSGTGKTVSLLSLIIAYQLHYP 64 (755)
T ss_pred cEEEECCCCCCcchHHHHHHHHHHHhCC
Confidence 4778777799999999999998765554
No 136
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=78.14 E-value=6.9 Score=46.74 Aligned_cols=110 Identities=23% Similarity=0.219 Sum_probs=64.7
Q ss_pred cEEEEeCCchH-HHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 500 ATLIVCPAPIL-AQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 500 ~tLIV~P~SLl-~QW~~Ei~k~~~~~-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
-+|||||.--+ .|=..|.++...-. ...|-+.-|..+.+.. .........|+|.|-..|..++.....
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e-----~~kl~k~~niliATPGRLlDHlqNt~~----- 225 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE-----ADKLVKGCNILIATPGRLLDHLQNTSG----- 225 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH-----HHHhhccccEEEeCCchHHhHhhcCCc-----
Confidence 58999999755 47666655433211 5666666665543321 111223678999999999887754322
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhc-cCeEEEEecc
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGT 635 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGT 635 (1064)
+.-..-+.+|+|||.+|-... --.-+.+..|+ -+..++.|+|
T Consensus 226 ----------------f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT 270 (543)
T KOG0342|consen 226 ----------------FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSAT 270 (543)
T ss_pred ----------------chhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCC
Confidence 111222789999999985433 12223333333 3456777887
No 137
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=77.84 E-value=7.7 Score=46.45 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=64.8
Q ss_pred CCCcE-EEEeCC-chHHHHHHHHHhcCCCCCCeEE-EEcCCCcccccccccchhhhh-cCCCEEEEehHHHhhhcccCCC
Q 001510 497 ATGAT-LIVCPA-PILAQWDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSD 572 (1064)
Q Consensus 497 ~~~~t-LIV~P~-SLl~QW~~Ei~k~~~~~~L~V~-vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~ 572 (1064)
.-+|+ ||+||+ .+..|-..|.++|...-+++++ +|.|..+.. ....+ ..+.||++|-+.|...+.-
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~e-------Q~k~Lk~g~EivVaTPgRlid~Vkm--- 363 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWE-------QSKELKEGAEIVVATPGRLIDMVKM--- 363 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHH-------HHHhhhcCCeEEEechHHHHHHHHh---
Confidence 45665 455676 5778999999999754467755 455544321 11222 5678999999988765421
Q ss_pred CcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH-HHHHHHH-HHhccC-eEEEEecc
Q 001510 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMA-LRLYAK-HRWCITGT 635 (1064)
Q Consensus 573 ~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~kal-~~L~a~-~RwlLTGT 635 (1064)
......+-.++|+|||.++-... -...+.+ ..++.+ ..++.++|
T Consensus 364 -------------------Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaT 410 (731)
T KOG0339|consen 364 -------------------KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSAT 410 (731)
T ss_pred -------------------hcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeecc
Confidence 01122234578999999876543 2222333 234443 35555655
No 138
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=76.63 E-value=7.2 Score=47.44 Aligned_cols=126 Identities=19% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCcEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 498 TGATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 498 ~~~tLIV~P~SLl-~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
.+..|.++|.-.+ .|=-++|.+-..+=.+++.+--|..+.+.... ........++|||+-||+-+---+..
T Consensus 261 g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~-pv~~~t~~dADIIVGTYEGiD~lLRt------- 332 (830)
T COG1202 261 GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE-PVVVDTSPDADIIVGTYEGIDYLLRT------- 332 (830)
T ss_pred CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCC-ccccCCCCCCcEEEeechhHHHHHHc-------
Confidence 4789999998654 57677787666544677777777765432211 12344557899999999976433210
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhc----cCeEEEEeccCCCCChhhhHhhhh
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYGLLR 649 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~----a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1064)
.+ .| -.-..||+||.|++.... ..+--.+.+|+ .-..+.||+| -.|+.||-..|.
T Consensus 333 -------g~-------~l--gdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSAT--VgNp~elA~~l~ 393 (830)
T COG1202 333 -------GK-------DL--GDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSAT--VGNPEELAKKLG 393 (830)
T ss_pred -------CC-------cc--cccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEee--cCChHHHHHHhC
Confidence 00 01 234689999999998632 33333444443 3557889999 356777766553
No 139
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=74.91 E-value=13 Score=44.29 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=65.8
Q ss_pred cEEEEeCCch----HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 500 ATLIVCPAPI----LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 500 ~tLIV~P~SL----l~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
..|||.|+-= +.+=...|..|++ .++...+.|...... -+..-.-....|+|.|-+.|..-+.+..
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~--~l~~~l~vGG~~v~~----Di~~fkee~~nIlVgTPGRL~di~~~~~---- 150 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLP--NLNCELLVGGRSVEE----DIKTFKEEGPNILVGTPGRLLDILQREA---- 150 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhh--ccceEEEecCccHHH----HHHHHHHhCCcEEEeCchhHHHHHhchh----
Confidence 5799999853 3344556666665 788888888754321 0111122346799999888776543211
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhccCeEEEE-ecc
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWCI-TGT 635 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a~~RwlL-TGT 635 (1064)
..+.-..-..+|+|||.++-... ...-..+..|+..+|-+| |+|
T Consensus 151 ----------------~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSAT 197 (567)
T KOG0345|consen 151 ----------------EKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSAT 197 (567)
T ss_pred ----------------hhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccch
Confidence 11223345789999999986543 444455566666655433 444
No 140
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=72.60 E-value=1.7 Score=52.99 Aligned_cols=36 Identities=42% Similarity=0.912 Sum_probs=30.6
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCC
Q 001510 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1064)
Q Consensus 412 ~~v~c~c~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~ 450 (1064)
....|+|+..... .|..++|+.|..|||..|+|.-.
T Consensus 85 ~~~~c~c~~~~~~---~g~~i~c~~c~~Wqh~~C~g~~~ 120 (508)
T KOG1844|consen 85 EISRCDCGLEDDM---EGLMIQCDWCGRWQHKICCGSFK 120 (508)
T ss_pred cccccccccccCC---CceeeCCcccCcccCceeeeecC
Confidence 4567999988775 78899999999999999998654
No 141
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=70.69 E-value=6.6 Score=47.45 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEE
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCI 530 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~v 530 (1064)
+||||++|+ +|..|--.||+.|+|......+|
T Consensus 58 rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFV 90 (663)
T COG0556 58 RPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFV 90 (663)
T ss_pred CCeEEEecchhHHHHHHHHHHHhCcCcceEEEe
Confidence 699999997 55679999999999976666555
No 142
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=70.26 E-value=38 Score=43.54 Aligned_cols=41 Identities=22% Similarity=0.162 Sum_probs=30.6
Q ss_pred cccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCC
Q 001510 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1064)
Q Consensus 597 i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN 639 (1064)
...++||+|||+|+-.. ...+.+..++...|++|-|=|-|-
T Consensus 415 ~~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 415 IDCDLLIVDESSMMDTW--LALSLLAALPDHARLLLVGDTDQL 455 (720)
T ss_pred ccCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEEECccccc
Confidence 34679999999999543 345555667778899999987663
No 143
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=70.04 E-value=2 Score=48.30 Aligned_cols=49 Identities=37% Similarity=0.848 Sum_probs=37.3
Q ss_pred hhhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhccccccccccccCCccccccchh
Q 001510 411 RERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1064)
Q Consensus 411 ~~~v~c~c~~~~~~~~~~g~~v~c~~--c~-~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~c~~c~~ 487 (1064)
.+...|+|...+ .|..|.||. |. .|-|-.|||.... +.+..+|+.|..
T Consensus 217 ~e~~yC~Cnqvs-----yg~Mi~CDn~~C~~eWFH~~CVGL~~~------------------------PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 217 DEPTYCICNQVS-----YGKMIGCDNPGCPIEWFHFTCVGLKTK------------------------PKGKWYCPRCKA 267 (274)
T ss_pred CCCEEEEecccc-----cccccccCCCCCCcceEEEeccccccC------------------------CCCcccchhhhh
Confidence 345678888443 367899999 99 8999999997654 346689999975
Q ss_pred h
Q 001510 488 L 488 (1064)
Q Consensus 488 ~ 488 (1064)
.
T Consensus 268 ~ 268 (274)
T KOG1973|consen 268 E 268 (274)
T ss_pred h
Confidence 3
No 144
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=69.70 E-value=11 Score=48.43 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=53.7
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
+.+-||+|+..+. .|...+-+++ +++|....|..... .....-.+||+-+|-..|.-|+-.+.-.
T Consensus 122 ~~v~vvT~neyLA~Rd~e~~~~~~~~L---Gl~vg~i~~~~~~~-------~r~~~y~~dI~Y~t~~e~gfDyLRD~m~- 190 (796)
T PRK12906 122 KGVHVVTVNEYLSSRDATEMGELYRWL---GLTVGLNLNSMSPD-------EKRAAYNCDITYSTNSELGFDYLRDNMV- 190 (796)
T ss_pred CCeEEEeccHHHHHhhHHHHHHHHHhc---CCeEEEeCCCCCHH-------HHHHHhcCCCeecCCccccccchhhccc-
Confidence 4678889988763 6888888887 68888887653221 2234456788877766655443211100
Q ss_pred ccchhhhhhcccCCCcchhhcccccceEEecccccc
Q 001510 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1064)
Q Consensus 575 ~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~I 610 (1064)
..+..+....++.+|+||+..+
T Consensus 191 --------------~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 191 --------------VYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred --------------cchhhhhccCcceeeeccchhe
Confidence 0012234456788999998875
No 145
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=68.78 E-value=49 Score=37.26 Aligned_cols=87 Identities=18% Similarity=0.071 Sum_probs=49.7
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
+++=||+.+..+ .+|...|-+++ ++.|-...+.... ......-..||+-+|-..+.-|+-.+.-
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~L---Glsv~~~~~~~~~-------~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~-- 186 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFL---GLSVGIITSDMSS-------EERREAYAADIVYGTNSEFGFDYLRDNL-- 186 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHT---T--EEEEETTTEH-------HHHHHHHHSSEEEEEHHHHHHHHHHHTT--
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHh---hhccccCccccCH-------HHHHHHHhCcccccccchhhHHHHHHHH--
Confidence 456777777655 37999999988 6888766554321 0122344678988887777665321100
Q ss_pred ccchhhhhhcccCCCcchhhcccccceEEecccccc
Q 001510 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1064)
Q Consensus 575 ~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~I 610 (1064)
...........++.+|+||+..+
T Consensus 187 -------------~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 187 -------------ALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp --------------SSGGG--SSSSSEEEECTHHHH
T ss_pred -------------hhccchhccCCCCEEEEeccceE
Confidence 00011223457889999998764
No 146
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=68.25 E-value=4.4 Score=39.26 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.3
Q ss_pred ceEEeccccccCChHHHHHHHHHHh--ccCeEEEEeccC
Q 001510 600 WRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTP 636 (1064)
Q Consensus 600 ~rVIlDEAH~IKN~~Sk~~kal~~L--~a~~RwlLTGTP 636 (1064)
..||+||+|.+. +......++.+ .....++|.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 24555666665 567789999999
No 147
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.19 E-value=16 Score=44.25 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=56.1
Q ss_pred EEEEeCCc-hHHHHHHHHHhcCCCCCCeEE----EEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 501 TLIVCPAP-ILAQWDAEITRHTRPGSLKTC----IYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 501 tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~----vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
.|||||+- |..|=-+-+.+...+ +..+ +.-|.++... ...--...+|+|-|-+.|..++.+....
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~--~hWIVPg~lmGGEkkKSE------KARLRKGiNILIgTPGRLvDHLknT~~i-- 283 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKP--FHWIVPGVLMGGEKKKSE------KARLRKGINILIGTPGRLVDHLKNTKSI-- 283 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcC--ceEEeeceeecccccccH------HHHHhcCceEEEcCchHHHHHHhccchh--
Confidence 69999985 667777777776653 2222 2333333221 1122245789999999998877543221
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccccCC-----hHHHHHHHHHH
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-----NAAAATEMALR 623 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN-----~~Sk~~kal~~ 623 (1064)
.+.++ ..||+|||.+|-. .-++..+++..
T Consensus 284 -----------------~~s~L--RwlVlDEaDrlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 284 -----------------KFSRL--RWLVLDEADRLLELGFEKDITQILKAVHS 317 (708)
T ss_pred -----------------eeeee--eEEEecchhHHHhccchhhHHHHHHHHhh
Confidence 13333 4489999999743 23555555533
No 148
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=68.16 E-value=49 Score=42.47 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=54.0
Q ss_pred CcEEEEe-CCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVC-PAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~-P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
..+|||. =.+++.+-..-+++.-- -.+..|........ ....++-+++..+.|.+...
T Consensus 79 ~~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~i---------~~~~~~rLivqIdSL~R~~~--------- 137 (824)
T PF02399_consen 79 KSVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYII---------DGRPYDRLIVQIDSLHRLDG--------- 137 (824)
T ss_pred CeEEEEEhHHHHHHHHHHHHhhcCC---Ccceeeeccccccc---------cccccCeEEEEehhhhhccc---------
Confidence 3566663 34566665555554321 13444544332211 11357889999998876421
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccccCChH-H-------HHHHHHHHh--ccCeEEEEecc
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-A-------AATEMALRL--YAKHRWCITGT 635 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-S-------k~~kal~~L--~a~~RwlLTGT 635 (1064)
..+ -.||.|||||+-.+-+.- | .....+..+ ++++.+++-||
T Consensus 138 --------------~~l--~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ 189 (824)
T PF02399_consen 138 --------------SLL--DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDAD 189 (824)
T ss_pred --------------ccc--cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCC
Confidence 111 239999999985432211 1 122223332 58888999888
No 149
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=67.82 E-value=23 Score=41.04 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=71.0
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
-.||+.|.. +-.|=.+.|.---.+-.+++.++.|....-. ....-..+.++|++|-+.+...+....+
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~-----qa~~L~~rPHvVvatPGRlad~l~sn~~------ 145 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM-----QAAILSDRPHVVVATPGRLADHLSSNLG------ 145 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhh-----hhhhcccCCCeEecCccccccccccCCc------
Confidence 478999986 4457777776554445788988888654321 1223335678999999988765532110
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCChH-HHHHHHHH-Hhcc-CeEEEEeccCCCCChhhh
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLYA-KHRWCITGTPIQRKLDDL 644 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~-Sk~~kal~-~L~a-~~RwlLTGTPiqN~l~DL 644 (1064)
.....+. +-..+|+|||.++-+.. ....+.+. .++. +-.+++|+| |.+++.++
T Consensus 146 ----------~~~~~~~--rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSAT-itd~i~ql 201 (442)
T KOG0340|consen 146 ----------VCSWIFQ--RLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSAT-ITDTIKQL 201 (442)
T ss_pred ----------cchhhhh--ceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEee-hhhHHHHh
Confidence 0111222 23468999999987654 22222222 2443 367899999 33444443
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=66.41 E-value=4.3 Score=51.73 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=33.5
Q ss_pred hhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH
Q 001510 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1064)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~ 614 (1064)
.....+|||||++..|..++... . ...|.......+|+||||.+....
T Consensus 215 ~~a~~AdivVtNH~LLladl~~~-~------------------~~iLp~~~~~~lViDEAH~L~d~A 262 (697)
T PRK11747 215 REIDEADVVVANHDLVLADLELG-G------------------GVVLPDPENLLYVLDEGHHLPDVA 262 (697)
T ss_pred HHHhhCCEEEECcHHHHhhhhcc-C------------------CcccCCCCCCEEEEECccchHHHH
Confidence 34577999999999998876310 0 012333457889999999997443
No 151
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.34 E-value=29 Score=43.77 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=31.8
Q ss_pred ccceEEeccccccCChH-HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 001510 598 FWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~-Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1064)
.|..+|+||+|++-... ....+.+..-...-+++++.|=...-+.-+.+-...+...++.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs 178 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLA 178 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCC
Confidence 57899999999995322 1222222222344578887764444333344433333333333
No 152
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=66.26 E-value=16 Score=40.66 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=16.0
Q ss_pred cceeecCCCcchHHHHHHHH
Q 001510 359 GGILADEMGLGKTVELLACI 378 (1064)
Q Consensus 359 GGILADEMGLGKTvq~LALI 378 (1064)
.-+|.=..|.|||..+-++.
T Consensus 44 ~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 44788899999999886654
No 153
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=64.07 E-value=4.5 Score=38.81 Aligned_cols=81 Identities=12% Similarity=-0.002 Sum_probs=48.1
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhh---HHHHHHH--HHHHHHHHhhccCCCCcCe----------------eEEeccCcc
Q 001510 822 LRKLVMALNGLAGIALIEKNLSQA---VSLYKEA--MAVVEEHSEDFRLDPLLNI----------------HLHHNLTEI 880 (1064)
Q Consensus 822 lrkvlifsq~la~L~iIe~~l~~a---~~~y~~~--l~~~~e~~~~f~~D~~~~l----------------h~~~Nl~~~ 880 (1064)
..++++|.+.......+.+.+... +..+... ...+....+.|+.+...-+ |+++--.+|
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~ 107 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW 107 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC
Confidence 367788887777777777766542 1111111 1233444445544442111 344334469
Q ss_pred Ccchhhhhhh-hhccCCCCceEE
Q 001510 881 LPMVANCATE-LSQNEQHFPGCS 902 (1064)
Q Consensus 881 np~~~~Qa~~-~~riGq~~~v~v 902 (1064)
++....|+.. ++|.||+..+.+
T Consensus 108 ~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 108 SPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CHHHheecccccccCCCCceEEe
Confidence 9999999999 999999766554
No 154
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=64.04 E-value=5.1 Score=47.41 Aligned_cols=79 Identities=23% Similarity=0.457 Sum_probs=46.4
Q ss_pred hhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhccccccccccccCCccccccchhhhhcC
Q 001510 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEAT 492 (1064)
Q Consensus 413 ~v~c~c~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~c~~c~~~~~~~ 492 (1064)
...|+|... +...-.-.|+.|+.|+-|.|.+|---...- .........+...+..|.|..|..
T Consensus 129 C~C~iC~kf-D~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i-----------~~G~s~~g~~g~~d~~f~C~~C~~----- 191 (446)
T PF07227_consen 129 CMCCICSKF-DDNKNTCSWIGCDVCGHWCHLDCALRHELI-----------GTGPSVKGSIGTLDMQFHCRACGK----- 191 (446)
T ss_pred CCccccCCc-ccCCCCeeEEeccCCCceehhhhhcccccc-----------cCCccCCCCCccCceEEEccCCCC-----
Confidence 344556553 223334579999999999999995211100 000001111223467899999964
Q ss_pred CCCCCCCcEEEEeCCchHHHHHHHHHhcC
Q 001510 493 DSPVATGATLIVCPAPILAQWDAEITRHT 521 (1064)
Q Consensus 493 ~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~ 521 (1064)
++-++..|++-|....
T Consensus 192 -------------~seLlG~vk~vf~~ca 207 (446)
T PF07227_consen 192 -------------TSELLGFVKKVFQTCA 207 (446)
T ss_pred -------------hhhHHHHHHHHHHHHH
Confidence 3457888888777654
No 155
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=63.77 E-value=53 Score=42.03 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=66.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccc
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+.+||++|. ++..|-.+.|+..+ +.++.++|..=..+... ........++..|||=|...+-.
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~-~~W~~~~~G~~~vVIGtRSAlF~------------ 309 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERY-RVWRRARRGEARVVIGTRSALFL------------ 309 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHH-HHHHHHhcCCceEEEEechhhcC------------
Confidence 579999997 78899999999888 47888888753221110 01122334667788877766543
Q ss_pred hhhhhhcccCCCcchhhcccccceEEeccccc--cCChHHHHH--HHH----HHhccCeEEEEeccCC
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAAT--EMA----LRLYAKHRWCITGTPI 637 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~--IKN~~Sk~~--kal----~~L~a~~RwlLTGTPi 637 (1064)
||. +-..||+||=|- .|..+...+ +-+ .....--.++-|+||-
T Consensus 310 ---------------Pf~--~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 310 ---------------PFK--NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred ---------------chh--hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 232 246899999996 444432221 112 2233445788899995
No 156
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=60.55 E-value=28 Score=45.04 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=52.8
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
+.+-||+++--+ ..|...+.+|+ ++.|-+..+.... ......-.+||+-+|-..|.-|+-.+.-.
T Consensus 127 kgVhVVTvNdYLA~RDae~m~~vy~~L---GLtvg~i~~~~~~-------~err~aY~~DItYgTn~e~gFDYLRDnm~- 195 (939)
T PRK12902 127 KGVHVVTVNDYLARRDAEWMGQVHRFL---GLSVGLIQQDMSP-------EERKKNYACDITYATNSELGFDYLRDNMA- 195 (939)
T ss_pred CCeEEEeCCHHHHHhHHHHHHHHHHHh---CCeEEEECCCCCh-------HHHHHhcCCCeEEecCCcccccchhhhhc-
Confidence 467778877654 48999999999 7888776543211 12233456889888766664433111000
Q ss_pred ccchhhhhhcccCCCcchhhcccccceEEecccccc
Q 001510 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1064)
Q Consensus 575 ~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~I 610 (1064)
..........++++|+||+..|
T Consensus 196 --------------~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 196 --------------TDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred --------------ccccccccCccceEEEecccce
Confidence 0011234456788999999876
No 157
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=60.11 E-value=20 Score=45.38 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=27.9
Q ss_pred CCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccc
Q 001510 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM 609 (1064)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~ 609 (1064)
+..|-.+|-+.|.+++.+ .+..-.+..|||||||.
T Consensus 349 ~T~IkFMTDGVLLrEi~~-----------------------DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 349 DTSIKFMTDGVLLREIEN-----------------------DFLLTKYSVIILDEAHE 383 (1172)
T ss_pred CceeEEecchHHHHHHHH-----------------------hHhhhhceeEEechhhh
Confidence 345888999999998753 35566788999999996
No 158
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=58.26 E-value=21 Score=44.88 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=31.2
Q ss_pred hhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCCh
Q 001510 549 ELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1064)
Q Consensus 549 ~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~ 613 (1064)
-..++.-+++|-+.|++.+..-+ ..+..+.| ||+||.|+++..
T Consensus 208 InP~ASCLVMTTEILRsMLYRGS--------------------EvmrEVaW--VIFDEIHYMRDk 250 (1041)
T KOG0948|consen 208 INPDASCLVMTTEILRSMLYRGS--------------------EVMREVAW--VIFDEIHYMRDK 250 (1041)
T ss_pred eCCCCceeeeHHHHHHHHHhccc--------------------hHhheeee--EEeeeehhcccc
Confidence 33567789999999998774311 23556666 899999999864
No 159
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=58.11 E-value=23 Score=42.94 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=57.2
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccch
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r 578 (1064)
-.+|++|.- |..|-..|-.+|..+-.++++..-|...-. .....--..++|||.|-..|-.-+..
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~E-----Eq~fqls~gceiviatPgrLid~Len--------- 389 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFE-----EQGFQLSMGCEIVIATPGRLIDSLEN--------- 389 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchh-----hhhhhhhccceeeecCchHHHHHHHH---------
Confidence 468888986 557899999999876677777666653211 00122334688999998887765431
Q ss_pred hhhhhcccCCCcchhhcccccceEEeccccccCC
Q 001510 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1064)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN 612 (1064)
..|..-.--+||+|||.++-.
T Consensus 390 -------------r~lvl~qctyvvldeadrmiD 410 (673)
T KOG0333|consen 390 -------------RYLVLNQCTYVVLDEADRMID 410 (673)
T ss_pred -------------HHHHhccCceEeccchhhhhc
Confidence 124444566899999997643
No 160
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=54.22 E-value=98 Score=35.90 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=16.8
Q ss_pred eeecCCCcchHHHHHHHHHHh
Q 001510 361 ILADEMGLGKTVELLACIFAH 381 (1064)
Q Consensus 361 ILADEMGLGKTvq~LALIl~~ 381 (1064)
++.-..|.|||..+.++....
T Consensus 26 Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 26 LLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred eeECCCCCCHHHHHHHHHHHH
Confidence 456688999999998887653
No 161
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=52.70 E-value=38 Score=41.37 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=45.0
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcc
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLS 568 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~ 568 (1064)
-.|||+|+- |..|-.+.|...++...+++..+.|.-.... ...--....||||.|-+.|...+.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK-----QqRlL~~~p~IVVATPGRlweli~ 329 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK-----QQRLLNQRPDIVVATPGRLWELIE 329 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH-----HHHHHhcCCCEEEecchHHHHHHH
Confidence 479999985 6678888888888767899998888632210 011111367899999998877654
No 162
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.38 E-value=70 Score=39.19 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=24.2
Q ss_pred ccceEEeccccccCChHH-HHHHHHHHhccCeEEEEeccCCCC
Q 001510 598 FWWRICLDEAQMVESNAA-AATEMALRLYAKHRWCITGTPIQR 639 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~S-k~~kal~~L~a~~RwlLTGTPiqN 639 (1064)
.+.++|+||+|++....- ...+.+..-...-+++++.|-+..
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 678999999999954221 122222222345567777664433
No 163
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=50.29 E-value=24 Score=40.75 Aligned_cols=131 Identities=12% Similarity=0.187 Sum_probs=69.7
Q ss_pred CCcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCc-ccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~-~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
.|-+|||||. ||++.=.-.++... +.....+.... .............-.++.++-+|.+.+.+....
T Consensus 134 dg~alvi~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~------ 203 (695)
T KOG0353|consen 134 DGFALVICPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKF------ 203 (695)
T ss_pred CCceEeechhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHH------
Confidence 3789999997 66654333444332 22222222111 100000000112224566777787777653210
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEeccccccCChH---HHHHHHH----HHhccCeEEEEeccCCCCChhhhHhhh
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMA----LRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~---Sk~~kal----~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1064)
..+.. ..+....|.+|-+||.|...... -.-++++ ++++...-+.||+|...|-++|.-.+|
T Consensus 204 ----mnkle-------ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 204 ----MNKLE-------KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred ----HHHHH-------HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHH
Confidence 01111 23455678899999999753211 1123333 345667789999999999888877765
Q ss_pred h
Q 001510 649 R 649 (1064)
Q Consensus 649 ~ 649 (1064)
.
T Consensus 273 ~ 273 (695)
T KOG0353|consen 273 C 273 (695)
T ss_pred h
Confidence 4
No 164
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=49.74 E-value=42 Score=43.43 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=51.0
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCc
Q 001510 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1064)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1064)
+.+-||+++--+ ..|...+-+|+ ++.|-+..+..... .....-.+||+-+|-..|.-|+-.+.-.
T Consensus 118 ~~VhVvT~NdyLA~RD~e~m~pvy~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~- 186 (870)
T CHL00122 118 KGVHIVTVNDYLAKRDQEWMGQIYRFL---GLTVGLIQEGMSSE-------ERKKNYLKDITYVTNSELGFDYLRDNMA- 186 (870)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHc---CCceeeeCCCCChH-------HHHHhcCCCCEecCCccccccchhhccC-
Confidence 567888887655 47999999999 68887665432210 2222344687766655444333211100
Q ss_pred ccchhhhhhcccCCCcchhhcccccceEEecccccc
Q 001510 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1064)
Q Consensus 575 ~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~I 610 (1064)
..+.......++++|+||+..+
T Consensus 187 --------------~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 187 --------------LSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred --------------cChHHhhccccceeeeecchhh
Confidence 0012234456889999999876
No 165
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=49.39 E-value=12 Score=49.45 Aligned_cols=45 Identities=33% Similarity=0.384 Sum_probs=31.7
Q ss_pred hhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH
Q 001510 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1064)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~ 614 (1064)
.....+|||||++..|..++.... ..| -.+..+|+||||.+....
T Consensus 427 ~~a~~AdivItNHalLl~dl~~~~--------------------~il--p~~~~lViDEAH~l~d~A 471 (928)
T PRK08074 427 NRAKFADLVITNHALLLTDLTSEE--------------------PLL--PSYEHIIIDEAHHFEEAA 471 (928)
T ss_pred HHHhcCCEEEECHHHHHHHHhhhc--------------------ccC--CCCCeEEEECCchHHHHH
Confidence 445789999999999998762100 012 237899999999986433
No 166
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=48.41 E-value=12 Score=48.56 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=30.9
Q ss_pred hhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCCh
Q 001510 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1064)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~ 613 (1064)
.....+|||||++..|..++... ..+ -.++.+|+||||.+...
T Consensus 409 ~~a~~AdivItNHall~~~~~~~---------------------~~~--p~~~~lIiDEAH~l~~~ 451 (820)
T PRK07246 409 EKAKTARLLITNHAYFLTRVQDD---------------------KDF--ARNKVLVFDEAQKLMLQ 451 (820)
T ss_pred HHHHhCCEEEEchHHHHHHHhhc---------------------cCC--CCCCEEEEECcchhHHH
Confidence 34567999999999998865210 011 24889999999999743
No 167
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=47.92 E-value=8.4 Score=42.29 Aligned_cols=49 Identities=37% Similarity=0.860 Sum_probs=37.3
Q ss_pred hhhhhhhhccccccccccccccccccc--ccc-cccccccCcCCCCCcccchhhhhhhccccccccccccCCccccccch
Q 001510 410 KRERVECICGAVSESRKYKGLWVQCDI--CDA-WQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCD 486 (1064)
Q Consensus 410 ~~~~v~c~c~~~~~~~~~~g~~v~c~~--c~~-w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~c~~c~ 486 (1064)
.++.+.|.|...+- |.-|.||. |.. |-|-.|||.... +.+..+|+.|-
T Consensus 218 e~e~lYCfCqqvSy-----GqMVaCDn~nCkrEWFH~~CVGLk~p------------------------PKG~WYC~eCk 268 (271)
T COG5034 218 EGEELYCFCQQVSY-----GQMVACDNANCKREWFHLECVGLKEP------------------------PKGKWYCPECK 268 (271)
T ss_pred cCceeEEEeccccc-----ccceecCCCCCchhheeccccccCCC------------------------CCCcEeCHHhH
Confidence 34678899987764 67899964 655 999999998653 35778999995
Q ss_pred h
Q 001510 487 E 487 (1064)
Q Consensus 487 ~ 487 (1064)
.
T Consensus 269 ~ 269 (271)
T COG5034 269 K 269 (271)
T ss_pred h
Confidence 4
No 168
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=46.84 E-value=7.1 Score=46.65 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=35.1
Q ss_pred hhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhccccccccccccCCccccccchh
Q 001510 415 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1064)
Q Consensus 415 ~c~c~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~c~~c~~ 487 (1064)
.|+|+.......+ .-|||+.|..|-|..|..---+... ...+...|.|..|..
T Consensus 171 c~vC~~g~~~~~N--rmlqC~~C~~~fHq~Chqp~i~~~l------------------~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 171 CSVCYCGGPGAGN--RMLQCDKCRQWYHQACHQPLIKDEL------------------AGDPFYEWFCDVCNR 223 (464)
T ss_pred eeeeecCCcCccc--eeeeecccccHHHHHhccCCCCHhh------------------ccCccceEeehhhcc
Confidence 5556655555555 6799999999999999732222111 122467789999975
No 169
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=46.21 E-value=41 Score=43.72 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=80.3
Q ss_pred cCCccccccchhh-hhcCCCCCCCCcEEEEeCC-chHHHHHHHHHhcCCCCCC-eEEEEcCCCcccccccccchhhhhcC
Q 001510 476 RDGEHICQWCDEL-IEATDSPVATGATLIVCPA-PILAQWDAEITRHTRPGSL-KTCIYEGARNSSLSDTSIMDISELVG 552 (1064)
Q Consensus 476 ~~~~~~c~~c~~~-~~~~~~~~~~~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L-~V~vy~G~~~~~~~~~~~~~~~~l~~ 552 (1064)
....|+|+.|.+. .+. ...+-++-|+|. +++.|=..++.--+....+ +.....|.-...+ . ...-.
T Consensus 537 aGKTfisfY~iEKVLRe----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEY------s-inp~n 605 (1330)
T KOG0949|consen 537 AGKTFISFYAIEKVLRE----SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEY------S-INPWN 605 (1330)
T ss_pred CCceeccHHHHHHHHhh----cCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHh------c-CCchh
Confidence 3556788888642 222 234567777785 6677776666543321111 1111112111000 0 01225
Q ss_pred CCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchh-hcccccceEEeccccccCChH-HHHHHHHHHhccCeEE
Q 001510 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTL-LTRIFWWRICLDEAQMVESNA-AAATEMALRLYAKHRW 630 (1064)
Q Consensus 553 ~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~-L~~i~w~rVIlDEAH~IKN~~-Sk~~kal~~L~a~~Rw 630 (1064)
+.|.||--+-+...+-.. |.+ -..-+-.+||+||.|.|.|.. +.....+..|-..--+
T Consensus 606 CQVLITvPecleslLlsp--------------------p~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L 665 (1330)
T KOG0949|consen 606 CQVLITVPECLESLLLSP--------------------PHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFL 665 (1330)
T ss_pred ceEEEEchHHHHHHhcCc--------------------hhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCee
Confidence 779999888887654310 000 011234689999999999876 6666666666667789
Q ss_pred EEeccCCCCChhhhHhhhh
Q 001510 631 CITGTPIQRKLDDLYGLLR 649 (1064)
Q Consensus 631 lLTGTPiqN~l~DL~sLL~ 649 (1064)
+|++| ++++..++..++
T Consensus 666 ~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 666 VLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred EEecc--cCCHHHHHHHHH
Confidence 99999 566666666555
No 170
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=44.89 E-value=12 Score=46.44 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=39.2
Q ss_pred CCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEe
Q 001510 525 SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICL 604 (1064)
Q Consensus 525 ~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIl 604 (1064)
.++.+.|+|+++ ....+++|+-.|..|..+... . +.=..+.=..||+
T Consensus 308 ~~~~CPYY~SR~------------avp~aqlV~LPYQ~LL~~stR---------~------------slgI~LkdsIvIi 354 (821)
T KOG1133|consen 308 ELRGCPYYASRR------------AVPQAQLVTLPYQLLLHESTR---------K------------SLGISLKDSIVII 354 (821)
T ss_pred hcCCCCchhhhh------------ccccccEEeccHHHHHhHHHH---------H------------hcCccccccEEEE
Confidence 677888998654 346789999999999875321 1 1122344568999
Q ss_pred ccccccCCh
Q 001510 605 DEAQMVESN 613 (1064)
Q Consensus 605 DEAH~IKN~ 613 (1064)
||||++-+.
T Consensus 355 DEAHNlidt 363 (821)
T KOG1133|consen 355 DEAHNLIDT 363 (821)
T ss_pred echhHHHHH
Confidence 999998654
No 171
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=44.42 E-value=36 Score=38.51 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=16.1
Q ss_pred cceeecCCCcchHHHHHHHHH
Q 001510 359 GGILADEMGLGKTVELLACIF 379 (1064)
Q Consensus 359 GGILADEMGLGKTvq~LALIl 379 (1064)
+-+|--+.|.|||..+-++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 446778999999998866543
No 172
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=43.76 E-value=36 Score=44.76 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCCCcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch--hhhhcCCCEEEEehHHHhhhcccCCC
Q 001510 496 VATGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDVLKEDLSHDSD 572 (1064)
Q Consensus 496 ~~~~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~--~~~l~~~DVVITTYetL~~d~~~~~~ 572 (1064)
...+-||||.|. ||+. +++.+..+ ..++....++....... ..... ......++|+-+|-+.+...-...
T Consensus 302 l~~gitvVISPL~SLm~---DQv~~L~~-~~I~a~~L~s~q~~~~~-~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-- 374 (941)
T KOG0351|consen 302 LLGGVTVVISPLISLMQ---DQVTHLSK-KGIPACFLSSIQTAAER-LAILQKLANGNPIIKILYVTPEKVVASEGLL-- 374 (941)
T ss_pred ccCCceEEeccHHHHHH---HHHHhhhh-cCcceeeccccccHHHH-HHHHHHHhCCCCeEEEEEeCHHHhhcccchh--
Confidence 445789999997 6664 22333222 24565556655432100 00001 111235778888888887642100
Q ss_pred CcccchhhhhhcccCCCcchhhcccc----cceEEeccccccCChH---HHHHHHHH----HhccCeEEEEeccCCCCCh
Q 001510 573 RHEGDRRFMRFQKRYPVIPTLLTRIF----WWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKL 641 (1064)
Q Consensus 573 ~~~~~r~~~r~~kry~~~~s~L~~i~----w~rVIlDEAH~IKN~~---Sk~~kal~----~L~a~~RwlLTGTPiqN~l 641 (1064)
..+.... -.++|+||||.+.... -.-++.+. +....--++||+|--.+--
T Consensus 375 -------------------~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~ 435 (941)
T KOG0351|consen 375 -------------------ESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVR 435 (941)
T ss_pred -------------------hHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHH
Confidence 0111111 4689999999886433 12233333 3345678999999988888
Q ss_pred hhhHhhhhccCCCCCC
Q 001510 642 DDLYGLLRFLKSSPFS 657 (1064)
Q Consensus 642 ~DL~sLL~FL~p~~f~ 657 (1064)
+|+...|..-++..|.
T Consensus 436 ~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 436 EDVIRSLGLRNPELFK 451 (941)
T ss_pred HHHHHHhCCCCcceec
Confidence 9999988888887544
No 173
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=39.41 E-value=1.1e+02 Score=38.12 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=37.9
Q ss_pred hhhcccccceEEeccccccC----C---hHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhh
Q 001510 592 TLLTRIFWWRICLDEAQMVE----S---NAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1064)
Q Consensus 592 s~L~~i~w~rVIlDEAH~IK----N---~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sL 647 (1064)
+.|....-.+|++||....- + +-..+.+-........++++..||.......++.+
T Consensus 128 ~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 128 SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 45777888999999999873 2 22333333334456789999999998855444444
No 174
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.15 E-value=51 Score=42.22 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=44.6
Q ss_pred CCccccccchhhhhcCCCCCCCCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccc-ccccchhhhhcCCCE
Q 001510 477 DGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLS-DTSIMDISELVGADI 555 (1064)
Q Consensus 477 ~~~~~c~~c~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~-~~~~~~~~~l~~~DV 555 (1064)
..+..||.|- +.+|+.+=.. .+.=++|+.+++| ..+++.+.+....+.. ..........+++||
T Consensus 473 ~~p~~Cp~Cg------------s~~L~~~G~G-terieeeL~~~FP--~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dI 537 (730)
T COG1198 473 PIPQSCPECG------------SEHLRAVGPG-TERIEEELKRLFP--GARIIRIDSDTTRRKGALEDLLDQFANGEADI 537 (730)
T ss_pred CCCCCCCCCC------------CCeeEEeccc-HHHHHHHHHHHCC--CCcEEEEccccccchhhHHHHHHHHhCCCCCe
Confidence 3456677773 2345554433 4566788999998 8999999887654321 111223344567899
Q ss_pred EEEehHHHh
Q 001510 556 VLTTYDVLK 564 (1064)
Q Consensus 556 VITTYetL~ 564 (1064)
+|-|--...
T Consensus 538 LiGTQmiaK 546 (730)
T COG1198 538 LIGTQMIAK 546 (730)
T ss_pred eecchhhhc
Confidence 987654433
No 175
>PF13173 AAA_14: AAA domain
Probab=38.98 E-value=33 Score=33.63 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=25.1
Q ss_pred ccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCC
Q 001510 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1064)
.-.+|++||+|.+.+-.... +.+..-....++++||.-..
T Consensus 61 ~~~~i~iDEiq~~~~~~~~l-k~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDAL-KFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccHHHHH-HHHHHhccCceEEEEccchH
Confidence 34579999999997543222 22222223569999998543
No 176
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=38.98 E-value=54 Score=42.84 Aligned_cols=58 Identities=29% Similarity=0.500 Sum_probs=33.6
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCe-EEEEcCCCcccccccccchhhhh-cCCCEEEEehHHHh
Q 001510 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLK 564 (1064)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~-V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~ 564 (1064)
-.||+||+- +..|=.+++.+|+.+-+++ |++|.|..... ....+ ...+|+|.|-..+.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~-------qiaelkRg~eIvV~tpGRmi 500 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ-------QIAELKRGAEIVVCTPGRMI 500 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH-------HHHHHhcCCceEEeccchhh
Confidence 368889984 5566666666655433555 56677765432 22222 22778888755443
No 177
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=38.35 E-value=1e+02 Score=40.69 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCc
Q 001510 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1064)
Q Consensus 511 ~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~ 590 (1064)
..|...+-+|. +|.|-+....... ......-.+||+-.|-..|.-|+-.+.-. ..
T Consensus 196 aewm~p~y~fl---GLtVg~i~~~~~~-------~~Rr~aY~~DItYgTn~EfGFDYLRDnma---------------~~ 250 (1025)
T PRK12900 196 KEWMNPVFEFH---GLSVGVILNTMRP-------EERREQYLCDITYGTNNEFGFDYLRDNMA---------------GT 250 (1025)
T ss_pred HHHHHHHHHHh---CCeeeeeCCCCCH-------HHHHHhCCCcceecCCCccccccchhccc---------------cc
Confidence 48999999998 6888665332111 02223345788766655554443211110 11
Q ss_pred chhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhH
Q 001510 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLY 645 (1064)
Q Consensus 591 ~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~ 645 (1064)
+..+.+..+.+.|+||+..|-= =.|+.-+++|| |+.+...++|
T Consensus 251 ~~~~vqR~~~faIVDEvDSvLI-----------DeARTPLIISg-p~~~~~~~~y 293 (1025)
T PRK12900 251 PEEMVQRDFYFAIVDEVDSVLI-----------DEARTPLIISG-PVPNADNSKF 293 (1025)
T ss_pred hhhhhccCCceEEEechhhhhh-----------ccccCceEEeC-CCCCcchHHH
Confidence 2345667889999999987521 13566789998 4444434433
No 178
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.13 E-value=1e+02 Score=38.63 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.2
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 001510 361 ILADEMGLGKTVELLACIFA 380 (1064)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1064)
||.=.-|.|||-.+.++.-.
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKA 61 (576)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 56668899999998887654
No 179
>CHL00181 cbbX CbbX; Provisional
Probab=37.97 E-value=56 Score=37.10 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=15.8
Q ss_pred eeecCCCcchHHHHHHHHH
Q 001510 361 ILADEMGLGKTVELLACIF 379 (1064)
Q Consensus 361 ILADEMGLGKTvq~LALIl 379 (1064)
+|-=..|.|||..+-++..
T Consensus 63 ll~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6778999999999877753
No 180
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=37.76 E-value=3e+02 Score=28.25 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=17.9
Q ss_pred eeecCCCcchHHHHHHHHHHhc
Q 001510 361 ILADEMGLGKTVELLACIFAHR 382 (1064)
Q Consensus 361 ILADEMGLGKTvq~LALIl~~~ 382 (1064)
|+.-.-|.||+-.+++++....
T Consensus 23 L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 23 LFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp EEECSTTSSHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHHc
Confidence 6666789999999999886643
No 181
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=37.15 E-value=1.2e+02 Score=40.26 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCc
Q 001510 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1064)
Q Consensus 511 ~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~ 590 (1064)
..|...+-+|. +|.|-+.....-.. ......-.+||+-+|-..|.-|+-.+.-. ..
T Consensus 227 aewmgply~fL---GLsvg~i~~~~~~~------~~rr~aY~~DItYgTn~EfGFDYLRDnm~---------------~~ 282 (1112)
T PRK12901 227 SEWMGPLYEFH---GLSVDCIDKHQPNS------EARRKAYNADITYGTNNEFGFDYLRDNMA---------------HS 282 (1112)
T ss_pred HHHHHHHHHHh---CCceeecCCCCCCH------HHHHHhCCCcceecCCCccccccchhccc---------------cc
Confidence 48999999999 68887654311000 02223345778766655554443211110 01
Q ss_pred chhhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCCChhhhHhh
Q 001510 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1064)
Q Consensus 591 ~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sL 647 (1064)
+..+.+..+.+.|+||+..|-=- .|+--+++||. ..+.-.++|..
T Consensus 283 ~~~~vqR~~~fAIVDEvDSILID-----------EARTPLIISGp-~~~~~~~~y~~ 327 (1112)
T PRK12901 283 PEDLVQRKHNYAIVDEVDSVLID-----------DARTPLIISGP-VPKGDDQEFEE 327 (1112)
T ss_pred hHhhhCcCCceeEeechhhhhhc-----------cccCcEEEeCC-CCCccHHHHHH
Confidence 13455667889999999865211 35666899985 44444444443
No 182
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.35 E-value=3e+02 Score=33.98 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.2
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 001510 361 ILADEMGLGKTVELLACIFA 380 (1064)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1064)
+|.-..|.|||..+.++...
T Consensus 40 Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 66678899999998887644
No 183
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=36.19 E-value=1.5e+02 Score=37.08 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.6
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 001510 361 ILADEMGLGKTVELLACIFA 380 (1064)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1064)
|+.=+.|.|||..+.++.-.
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 67778999999999887754
No 184
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.07 E-value=2.5e+02 Score=35.48 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=31.1
Q ss_pred ccceEEeccccccCChHH-HHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCc
Q 001510 598 FWWRICLDEAQMVESNAA-AATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~S-k~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1064)
.+.+||+||+|++..... ..-+.+........++++.|-...=+.-|-+-...+...++..
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~ 182 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQV 182 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCH
Confidence 578999999999943211 1122222223455677766633332333444344444444443
No 185
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.03 E-value=2.2e+02 Score=32.95 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=65.8
Q ss_pred CCCcEEEEeCCc----hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCC
Q 001510 497 ATGATLIVCPAP----ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 572 (1064)
Q Consensus 497 ~~~~tLIV~P~S----Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~ 572 (1064)
..=-.+|++|.. -..|-..|+.+|+ .++|.+-.|....+-. ...-.....++|.|-..+..-..+-
T Consensus 152 ~~IQ~~ilVPtrelALQtSqvc~~lskh~---~i~vmvttGGT~lrDD-----I~Rl~~~VH~~vgTPGRIlDL~~Kg-- 221 (459)
T KOG0326|consen 152 NVIQAIILVPTRELALQTSQVCKELSKHL---GIKVMVTTGGTSLRDD-----IMRLNQTVHLVVGTPGRILDLAKKG-- 221 (459)
T ss_pred cceeEEEEeecchhhHHHHHHHHHHhccc---CeEEEEecCCcccccc-----eeeecCceEEEEcCChhHHHHHhcc--
Confidence 344689999964 2468899999999 6999999987654311 0111123457777777665443210
Q ss_pred CcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH--HHHHHHHHHhccC-eEEEEecc
Q 001510 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAK-HRWCITGT 635 (1064)
Q Consensus 573 ~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~--Sk~~kal~~L~a~-~RwlLTGT 635 (1064)
.-..-+-..+|+|||..+-+.. ....+.+.-|+.. .-++-|+|
T Consensus 222 --------------------Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 222 --------------------VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred --------------------cccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 1111234578999999987765 2333444455443 34555666
No 186
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=35.94 E-value=67 Score=38.23 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=17.8
Q ss_pred cceeecCCCcchHHHHHHHHHH
Q 001510 359 GGILADEMGLGKTVELLACIFA 380 (1064)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~ 380 (1064)
+=++.-..|.|||..+.++...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4467888999999999887654
No 187
>PHA00673 acetyltransferase domain containing protein
Probab=35.19 E-value=63 Score=33.41 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=36.7
Q ss_pred ccceEEeccccccCChHHHHHHHHHHh---ccCeEEEEeccCCCCChh
Q 001510 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLD 642 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~l~ 642 (1064)
.-+-|++|+.|+=+.-.+++.+.+... ..-++|-+|+||-.|.++
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 346789999999888888877776653 467899999999999875
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=33.68 E-value=3.4e+02 Score=31.45 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=28.7
Q ss_pred ccceEEeccccccCChHHHHHHHHHHh---ccCeEEEEeccCCCCChhhhHhhhhcc
Q 001510 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFL 651 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~l~DL~sLL~FL 651 (1064)
.+.+||+|+|+.+-.. .....++.| .....++|+..-...=+.-+-|=...+
T Consensus 113 ~~kV~iI~~ae~m~~~--AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i 167 (319)
T PRK08769 113 IAQVVIVDPADAINRA--ACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRL 167 (319)
T ss_pred CcEEEEeccHhhhCHH--HHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEe
Confidence 5789999999998422 222223333 455567777654444444444433333
No 189
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=32.84 E-value=22 Score=41.07 Aligned_cols=40 Identities=28% Similarity=0.210 Sum_probs=29.4
Q ss_pred cceEEeccccccCChHHHHHH-HHHHhccCeEEEEeccCCCCCh
Q 001510 599 WWRICLDEAQMVESNAAAATE-MALRLYAKHRWCITGTPIQRKL 641 (1064)
Q Consensus 599 w~rVIlDEAH~IKN~~Sk~~k-al~~L~a~~RwlLTGTPiqN~l 641 (1064)
=-.||+||||+ .+..+-+ .+.+|-...+..+||.+.|=.|
T Consensus 244 dAfVIlDEaQN---tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 244 DAFVILDEAQN---TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CeEEEEecccc---cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 35799999997 3333333 3456888999999999988654
No 190
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=32.36 E-value=4e+02 Score=35.24 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=30.4
Q ss_pred hhcccccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCC
Q 001510 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1064)
Q Consensus 593 ~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1064)
.|...+||++|+|||-.|--+. .+.-|.-..|++|-|-+.|
T Consensus 791 lf~~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 791 LFVNRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 4667789999999998876543 3344666778888887655
No 191
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.27 E-value=2e+02 Score=36.34 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=17.4
Q ss_pred ceeecCCCcchHHHHHHHHHH
Q 001510 360 GILADEMGLGKTVELLACIFA 380 (1064)
Q Consensus 360 GILADEMGLGKTvq~LALIl~ 380 (1064)
=||.-+.|.|||..+.++.-.
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 367779999999999888754
No 192
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=31.68 E-value=36 Score=39.79 Aligned_cols=39 Identities=26% Similarity=0.219 Sum_probs=28.5
Q ss_pred cceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCCC
Q 001510 599 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1064)
Q Consensus 599 w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN 639 (1064)
=..||+||||++--. ..--.+.+.-...+++|||-|.|-
T Consensus 352 ~~FiIIDEaQNLTph--eikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 352 DSFIIIDEAQNLTPH--ELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred cceEEEehhhccCHH--HHHHHHHhccCCCEEEEcCCHHHc
Confidence 357999999998532 333345556677899999999874
No 193
>PLN03025 replication factor C subunit; Provisional
Probab=31.65 E-value=58 Score=37.33 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=34.3
Q ss_pred ccceEEeccccccCChHHH-HHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCC
Q 001510 598 FWWRICLDEAQMVESNAAA-ATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~Sk-~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~ 655 (1064)
.|..||+||+|.+-..... ..+.+.......+++++.++...-+..|-+-...+...+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~ 157 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence 5889999999998532211 112222224556888988876655555655544444333
No 194
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.66 E-value=56 Score=41.95 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=36.0
Q ss_pred cccceEEeccccccCChH-HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 001510 597 IFWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1064)
Q Consensus 597 i~w~rVIlDEAH~IKN~~-Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1064)
-+|.++||||+|++.+.. ..+.|.+..-....+++|+.|=.+.=+.-|.+-...++..++.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 468899999999996432 1122222233456788998886655445555544444444433
No 195
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=29.58 E-value=2.7e+02 Score=31.70 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=72.6
Q ss_pred CcEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhh-cCCCEEEEehHHHhhhcccCCCCccc
Q 001510 499 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
--.||+.|.-=+ .|-.+-+.....+-++.++..-|.+.... +...+ -...+|.-|-..+-..+..
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge------dikkld~G~hvVsGtPGrv~dmikr------- 162 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE------DIKKLDYGQHVVSGTPGRVLDMIKR------- 162 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccch------hhhhhcccceEeeCCCchHHHHHHh-------
Confidence 358999998644 46666665554433566666666554321 11111 1223555454444333211
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCCh--HHHHHHHHHHhc-cCeEEEEeccCCCCChhhhHhhhhccCC
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1064)
..|.-..-.++|||||..+-|. ..+.+...+.|+ .-..+++|+|- ..|+.-+..+..+
T Consensus 163 ---------------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmt 223 (400)
T KOG0328|consen 163 ---------------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMT 223 (400)
T ss_pred ---------------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcC
Confidence 1244455678999999987654 477888888886 66788889983 2344444444444
Q ss_pred CC
Q 001510 654 SP 655 (1064)
Q Consensus 654 ~~ 655 (1064)
+|
T Consensus 224 dp 225 (400)
T KOG0328|consen 224 DP 225 (400)
T ss_pred Cc
Confidence 33
No 196
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.25 E-value=95 Score=38.30 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=56.4
Q ss_pred cEEEEeCC-chHHHHHHHHHhcC--CCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCccc
Q 001510 500 ATLIVCPA-PILAQWDAEITRHT--RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~--~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
..+|+.|. .|..|=..|..+.. +..++++.-+....... ..........+|++|.|-..+...+.....
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~----qk~a~~~~~k~dili~TP~ri~~~~~~~~~---- 282 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPS----QKPAFLSDEKYDILISTPMRIVGLLGLGKL---- 282 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchh----hccchhHHHHHHHHhcCHHHHHHHhcCCCc----
Confidence 57899997 67789999999987 43344443333321111 112334446788999988888776642110
Q ss_pred chhhhhhcccCCCcchhhcccccceEEeccccccCCh
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~ 613 (1064)
.-.|..++| +|+|||.++-++
T Consensus 283 --------------~idl~~V~~--lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 283 --------------NIDLSKVEW--LVVDEADLLFEP 303 (593)
T ss_pred --------------cchhheeee--EeechHHhhhCh
Confidence 012555555 788999999887
No 197
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=28.44 E-value=1.7e+02 Score=38.19 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=47.8
Q ss_pred cEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCCcc
Q 001510 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1064)
Q Consensus 500 ~tLIV~P~SLl----~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1064)
.+=||..+--+ ..|...+-+|+ ++.|-+....... ......-.+||+-+|-..|.-|+-.+.-..
T Consensus 121 gVhVVTvNdYLA~RDae~mg~vy~fL---GLsvG~i~~~~~~-------~~rr~aY~~DItYgTn~E~gFDYLRDnm~~- 189 (925)
T PRK12903 121 GVIVSTVNEYLAERDAEEMGKVFNFL---GLSVGINKANMDP-------NLKREAYACDITYSVHSELGFDYLRDNMVS- 189 (925)
T ss_pred ceEEEecchhhhhhhHHHHHHHHHHh---CCceeeeCCCCCh-------HHHHHhccCCCeeecCcccchhhhhhcccc-
Confidence 44455554433 38999999999 6887655432111 012233457888777666554432111000
Q ss_pred cchhhhhhcccCCCcchhhcccccceEEecccccc
Q 001510 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1064)
Q Consensus 576 ~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~I 610 (1064)
....+....+.++|+||+..|
T Consensus 190 --------------~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 190 --------------SKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred --------------cHHHhcCcccceeeeccchhe
Confidence 012244556778888988875
No 198
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.40 E-value=41 Score=34.17 Aligned_cols=58 Identities=12% Similarity=0.004 Sum_probs=37.8
Q ss_pred CCCCCCccccCccccceeccCCCcccCCCCCCCCCcccceeecCCCcchHHHHHHHHHHhc
Q 001510 322 SPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR 382 (1064)
Q Consensus 322 ~Plw~~~~~~~~~~~~yyn~~tG~i~~~~~~~~~~~rGGILADEMGLGKTvq~LALIl~~~ 382 (1064)
-|.|....-...+..+|||++|+.-.++++.......| .-.||-=.-|.|+-|+..|.
T Consensus 8 P~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~~~~---~~~~~~p~~Vr~sHlLVKH~ 65 (163)
T KOG3259|consen 8 PPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSKSGG---KIGQGEPARVRCSHLLVKHK 65 (163)
T ss_pred CchhheeccccCCCcceeccccchhhccCCCccccccc---cccCCCccceeEEEEEEccc
Confidence 35687776667788999999999887777666544334 33333344555555555554
No 199
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=27.51 E-value=1.2e+02 Score=33.52 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=18.3
Q ss_pred cEEEEeCCchHHHHHHHHHhcCC
Q 001510 500 ATLIVCPAPILAQWDAEITRHTR 522 (1064)
Q Consensus 500 ~tLIV~P~SLl~QW~~Ei~k~~~ 522 (1064)
=+-+|||++++.|=.+-+...+.
T Consensus 72 LvrviVpk~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 72 LVRVIVPKALLEQMRQMLRSRLG 94 (229)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHH
Confidence 36688999999998888877663
No 200
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.73 E-value=3.4e+02 Score=34.43 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=16.2
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 001510 361 ILADEMGLGKTVELLACIFA 380 (1064)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1064)
|+.-.-|.|||..+..+.-.
T Consensus 42 Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 42 IFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 57778999999998877644
No 201
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=26.34 E-value=2.8e+02 Score=37.62 Aligned_cols=103 Identities=15% Similarity=0.218 Sum_probs=65.7
Q ss_pred CcEEEEeCCchH-----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhhcCCCEEEEehHHHhhhcccCCCC
Q 001510 499 GATLIVCPAPIL-----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1064)
Q Consensus 499 ~~tLIV~P~SLl-----~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1064)
+...-|+|...+ .-|..-|.+-. ++++....|.... +...+...+|+|.|.+.+..--
T Consensus 1187 ~~~vyi~p~~~i~~~~~~~w~~~f~~~~---G~~~~~l~ge~s~--------~lkl~~~~~vii~tpe~~d~lq------ 1249 (1674)
T KOG0951|consen 1187 GRAVYIAPLEEIADEQYRDWEKKFSKLL---GLRIVKLTGETSL--------DLKLLQKGQVIISTPEQWDLLQ------ 1249 (1674)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcccc---CceEEecCCcccc--------chHHhhhcceEEechhHHHHHh------
Confidence 456667777643 46877777763 6888878776543 5667788999999988765421
Q ss_pred cccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHH-------HHHHHHHhccCeEEEEeccCCCC
Q 001510 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA-------ATEMALRLYAKHRWCITGTPIQR 639 (1064)
Q Consensus 574 ~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk-------~~kal~~L~a~~RwlLTGTPiqN 639 (1064)
... .-+..|.||.|++.....+ ...++..+....|++--.|-+.|
T Consensus 1250 -------------------~iQ--~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1250 -------------------SIQ--QVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLAN 1301 (1674)
T ss_pred -------------------hhh--hcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhcc
Confidence 011 2356799999999854321 44555666555565544444444
No 202
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.22 E-value=91 Score=37.12 Aligned_cols=105 Identities=22% Similarity=0.164 Sum_probs=67.2
Q ss_pred CcEEEEeCCchH-HH---HHHHHHhcCCCCCCeEE-EEcCCCcccccccccchhhhh-cCCCEEEEehHHHhhhcccCCC
Q 001510 499 GATLIVCPAPIL-AQ---WDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSD 572 (1064)
Q Consensus 499 ~~tLIV~P~SLl-~Q---W~~Ei~k~~~~~~L~V~-vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~ 572 (1064)
-+.||+.|+.=+ .| -..++.+++ .++.. +|+|.+... ....+ .+.||||.|-..+......
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt---~lr~s~~~ggD~~ee-------qf~~l~~npDii~ATpgr~~h~~ve--- 157 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGT---KLRQSLLVGGDSIEE-------QFILLNENPDIIIATPGRLLHLGVE--- 157 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhcccc---chhhhhhcccchHHH-------HHHHhccCCCEEEecCceeeeeehh---
Confidence 478999998633 34 455666666 56655 666654431 22223 3689999887766532210
Q ss_pred CcccchhhhhhcccCCCcchhhcccccceEEeccccccCCh--HHHHHHHHHHhcc-CeEEEEecc
Q 001510 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYA-KHRWCITGT 635 (1064)
Q Consensus 573 ~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~--~Sk~~kal~~L~a-~~RwlLTGT 635 (1064)
..|..-.-.+||+|||.+|-.. .-+..+.+.+++. ...+++|||
T Consensus 158 -------------------m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSat 204 (529)
T KOG0337|consen 158 -------------------MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSAT 204 (529)
T ss_pred -------------------eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEecc
Confidence 1133334568999999997543 4667777888864 468899999
No 203
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=26.18 E-value=2.5e+02 Score=35.87 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=24.2
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEE
Q 001510 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIY 531 (1064)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~~~L~V~vy 531 (1064)
+|+|||+|.-. ..||.+|++.|+| .-.|..|
T Consensus 55 ~p~Lvi~~n~~~A~ql~~el~~f~p--~~~V~~f 86 (655)
T TIGR00631 55 RPTLVIAHNKTLAAQLYNEFKEFFP--ENAVEYF 86 (655)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhCC--CCeEEEE
Confidence 58999999854 5799999999997 3335444
No 204
>PF13245 AAA_19: Part of AAA domain
Probab=25.59 E-value=1.1e+02 Score=27.65 Aligned_cols=19 Identities=37% Similarity=0.305 Sum_probs=15.3
Q ss_pred ecCCCcchHHHHHHHHHHh
Q 001510 363 ADEMGLGKTVELLACIFAH 381 (1064)
Q Consensus 363 ADEMGLGKTvq~LALIl~~ 381 (1064)
-=-.|-|||-+++.++...
T Consensus 16 ~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4568999999998888654
No 205
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=25.59 E-value=65 Score=40.39 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=31.9
Q ss_pred cccceEEeccccccCChHHHHHHHHHHhccCeEEEEeccCCC
Q 001510 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1064)
Q Consensus 597 i~w~rVIlDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1064)
..+++||+|||-|+-. ....+.+..++...|++|.|=|-|
T Consensus 258 l~~dvlIiDEaSMvd~--~l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 258 LPLDVLVVDEASMVDL--PLMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred CcccEEEEcccccCCH--HHHHHHHHhcCCCCEEEEECChhh
Confidence 3689999999999964 345566677888889999998765
No 206
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=25.03 E-value=2.7e+02 Score=36.47 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.7
Q ss_pred cceeecCCCcchHHHHHHHHHHh
Q 001510 359 GGILADEMGLGKTVELLACIFAH 381 (1064)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~~ 381 (1064)
=-||+-|.|-|||-|.=-+++..
T Consensus 67 vvii~getGsGKTTqlP~~lle~ 89 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFLLEE 89 (845)
T ss_pred EEEEeCCCCCChHHHHHHHHHhh
Confidence 45899999999999987766653
No 207
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=24.92 E-value=25 Score=29.17 Aligned_cols=15 Identities=47% Similarity=1.247 Sum_probs=9.9
Q ss_pred ccccccccccccccc
Q 001510 430 LWVQCDICDAWQHAD 444 (1064)
Q Consensus 430 ~~v~c~~c~~w~h~~ 444 (1064)
.||||+.|..|....
T Consensus 2 ~WVQCd~C~KWR~lp 16 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP 16 (50)
T ss_dssp EEEE-TTT--EEEE-
T ss_pred eEEECCCCCceeeCC
Confidence 499999999999874
No 208
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=24.82 E-value=5e+02 Score=33.68 Aligned_cols=39 Identities=26% Similarity=0.176 Sum_probs=26.5
Q ss_pred ccceEEeccccccCChHHHHHHHHHH-hccCeEEEEeccCCC
Q 001510 598 FWWRICLDEAQMVESNAAAATEMALR-LYAKHRWCITGTPIQ 638 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~Sk~~kal~~-L~a~~RwlLTGTPiq 638 (1064)
..++||||||.|+.... ..+.+.. .....+++|-|=|-|
T Consensus 439 ~~~llIvDEasMv~~~~--~~~Ll~~~~~~~~kliLVGD~~Q 478 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQ--MARVLKEAEEAGAKVVLVGDPEQ 478 (744)
T ss_pred CCcEEEEECcccCCHHH--HHHHHHHHHhcCCEEEEECChHH
Confidence 56799999999996443 3333332 346778999886544
No 209
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=23.72 E-value=4.1e+02 Score=31.29 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.1
Q ss_pred eeecCCCcchHHHHHHHHHHh
Q 001510 361 ILADEMGLGKTVELLACIFAH 381 (1064)
Q Consensus 361 ILADEMGLGKTvq~LALIl~~ 381 (1064)
++.=.-|+|||..+.++....
T Consensus 45 Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 45 LIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 566688999999999887654
No 210
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=23.65 E-value=5.3e+02 Score=34.21 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.0
Q ss_pred ceeecCCCcchHHHHHHHHHHh
Q 001510 360 GILADEMGLGKTVELLACIFAH 381 (1064)
Q Consensus 360 GILADEMGLGKTvq~LALIl~~ 381 (1064)
-++.-|.|.|||.|+--+|+.+
T Consensus 191 vvIsGeTGcGKTTQvpQfiLd~ 212 (924)
T KOG0920|consen 191 VVISGETGCGKTTQVPQFILDE 212 (924)
T ss_pred EEEeCCCCCCchhhhhHHHHHH
Confidence 3677799999999999999864
No 211
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=23.35 E-value=3.6e+02 Score=35.30 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=40.9
Q ss_pred cCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChHHHHHHHHHHhc----c
Q 001510 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY----A 626 (1064)
Q Consensus 551 ~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~Sk~~kal~~L~----a 626 (1064)
.+..|++.|-..+..|+-. ..+.--....||+||||++.... .-+-.++..+ .
T Consensus 6 ~~ggi~~~T~rIl~~DlL~----------------------~ri~~~~itgiiv~~Ahr~~~~~-~eaFI~rlyr~~n~~ 62 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT----------------------GIIPPELITGILVLRADRIIESS-QEAFILRLYRQKNKT 62 (814)
T ss_pred hcCCEEEEechhhHhHHhc----------------------CCCCHHHccEEEEeecccccccc-cHHHHHHHHHHhCCC
Confidence 4567888898888888621 11222235679999999996433 3333334333 3
Q ss_pred CeEEEEeccCCC
Q 001510 627 KHRWCITGTPIQ 638 (1064)
Q Consensus 627 ~~RwlLTGTPiq 638 (1064)
.+..++|..|-.
T Consensus 63 gfIkafSdsP~~ 74 (814)
T TIGR00596 63 GFIKAFSDNPEA 74 (814)
T ss_pred cceEEecCCCcc
Confidence 456788888865
No 212
>PF14562 Endonuc_BglI: Restriction endonuclease BglI; PDB: 1DMU_A.
Probab=22.72 E-value=66 Score=34.98 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhh---hc--cccCChhHHHHHHhhhcC-ccchHHHHHHHHHhhc
Q 001510 972 TVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALD---DR--EKQYSAWWLEALHHAEGN-KDFSAELIRKIEEAIS 1044 (1064)
Q Consensus 972 ~~~~~~~~~y~~~~~~~~~~a~~~~~~~~~~v~~~~~---~~--~~~~~~ww~~~l~~~~~~-~~~~~~l~~~i~~~~~ 1044 (1064)
++..+++++||+.-.+-++++..|..+-|.+-..+.. +. ..++-.---|++.|+|-. +...+.|.+.++...-
T Consensus 20 ~~li~~E~y~l~~~~n~i~~n~eei~adynEa~~L~PFW~NYPPe~RGr~p~gdqiPwlEvgEk~vGskl~rlv~~~~e 98 (292)
T PF14562_consen 20 NQLINMEQYYLNEMFNSIHQNEEEIHADYNEANFLHPFWMNYPPEQRGRMPIGDQIPWLEVGEKTVGSKLPRLVCCNFE 98 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTS-----SSS--SS----HHHHHHHTHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhchhhhcCChhHcCcCCcccccchhhHHHHHhhhhHHHHHHhccc
Confidence 4678899999999999999999999999988555430 00 011111122455556532 4455677888776643
No 213
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.45 E-value=1.8e+02 Score=35.85 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCcccccc-cccchhhhhcCCCEEEEehH
Q 001510 510 LAQWDAEITRHTRPGSLKTCIYEGARNSSLSD-TSIMDISELVGADIVLTTYD 561 (1064)
Q Consensus 510 l~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~-~~~~~~~~l~~~DVVITTYe 561 (1064)
.+...+|+.+.+| ..++..+++....+... ...+..-.-.+++|+|.|--
T Consensus 271 te~~~e~l~~~fp--~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~ 321 (505)
T TIGR00595 271 TEQVEEELAKLFP--GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM 321 (505)
T ss_pred HHHHHHHHHhhCC--CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc
Confidence 6788899999997 78999999875433210 11112222356788887653
No 214
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=22.36 E-value=69 Score=40.51 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=29.7
Q ss_pred cCCCEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcchhhcccccceEEeccccccCChH
Q 001510 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1064)
Q Consensus 551 ~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~rVIlDEAH~IKN~~ 614 (1064)
..+|++|++|..+..+....... .+ -..-..+|+||||.+-+..
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~-------------------~~-~p~~~v~v~DEAH~l~d~a 236 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESR-------------------IL-LPENDVVVFDEAHNLPDIA 236 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhh-------------------cc-CCcccEEEEeccccchHHH
Confidence 57899999999998764311000 00 2235689999999997643
No 215
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=21.72 E-value=47 Score=39.65 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=28.2
Q ss_pred ccCeEEEEeccCCCCChhhhHhhhhccCCCCC
Q 001510 625 YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1064)
Q Consensus 625 ~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1064)
+.++-.+.||||+.|.+.|+|++-++|.++-+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 45677889999999999999999999998753
No 216
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=21.16 E-value=6e+02 Score=30.06 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=16.5
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 001510 361 ILADEMGLGKTVELLACIFA 380 (1064)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1064)
+|.=++|.|||..++.+...
T Consensus 86 LI~G~pG~GKStLllq~a~~ 105 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAAR 105 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 57779999999998887653
No 217
>PRK14974 cell division protein FtsY; Provisional
Probab=20.23 E-value=6.9e+02 Score=29.17 Aligned_cols=44 Identities=9% Similarity=-0.061 Sum_probs=24.3
Q ss_pred ccceEEeccccccCChHHHHHHH---HHHhccC-eEEEEeccCCCCCh
Q 001510 598 FWWRICLDEAQMVESNAAAATEM---ALRLYAK-HRWCITGTPIQRKL 641 (1064)
Q Consensus 598 ~w~rVIlDEAH~IKN~~Sk~~ka---l~~L~a~-~RwlLTGTPiqN~l 641 (1064)
..++||+|.|++..+........ ...+... ..+++++|-=++.+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 45799999999987554332222 2222333 34556666543333
Done!