Query 001510
Match_columns 1064
No_of_seqs 402 out of 3012
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 16:20:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001510.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_812-815//hhsearch_pdb/001510hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 557.3 14.9 426 281-928 227-703 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 529.2 19.6 436 284-927 50-546 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 485.8 24.7 416 282-927 30-471 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 329.1 23.2 349 498-924 200-630 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 241.6 22.3 368 499-923 53-489 (494)
6 2fwr_A DNA repair protein RAD2 1.0 1 1 224.1 16.7 309 499-922 134-467 (472)
7 1z5z_A Helicase of the SNF2/RA 1.0 1 1 198.2 8.1 206 687-927 11-242 (271)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 196.4 24.1 368 498-924 296-764 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 188.4 23.7 357 498-916 296-756 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 178.2 21.3 357 498-916 55-515 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=557.30 Aligned_cols=426 Identities=19% Similarity=0.215 Sum_probs=324.0
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 898884-6888289999999999720099999831100123678877754347666301026788655798888887545
Q 001510 281 EDLPDL-LPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFG 359 (1064)
Q Consensus 281 ~~~p~L-~~~LrpYQ~~aV~WMl~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~~rG 359 (1064)
.++|.+ ..+|||||++||+||+...... +|
T Consensus 227 ~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~-------------------------------------------------~~ 257 (800)
T 3mwy_W 227 VQPPFIKGGELRDFQLTGINWMAFLWSKG-------------------------------------------------DN 257 (800)
T ss_dssp SCCTTCCSSCCCTHHHHHHHHHHHHHTTT-------------------------------------------------CC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCC-------------------------------------------------CC
T ss_conf 69986579975899999999999985138-------------------------------------------------99
Q ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36662988636899999999813999998411112212320235667762111144320355431112465210132353
Q 001510 360 GILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDA 439 (1064)
Q Consensus 360 GILADEMGLGKTie~LALIl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~cg~~~~~~~~~g~~v~c~~c~~ 439 (1064)
|||||+||||||+++|++|.......
T Consensus 258 ~ILademGlGKT~~ai~~i~~l~~~~------------------------------------------------------ 283 (800)
T 3mwy_W 258 GILADEMGLGKTVQTVAFISWLIFAR------------------------------------------------------ 283 (800)
T ss_dssp EEECCCTTSSTTHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC------------------------------------------------------
T ss_conf 89982787532999999999999860------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 44566557688987654035663101356543210257854332000111027898999938999098117899999984
Q 001510 440 WQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITR 519 (1064)
Q Consensus 440 w~ha~cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k 519 (1064)
...+++|||||.+++.||.+||.+
T Consensus 284 --------------------------------------------------------~~~~~~LIV~P~sll~qW~~E~~~ 307 (800)
T 3mwy_W 284 --------------------------------------------------------RQNGPHIIVVPLSTMPAWLDTFEK 307 (800)
T ss_dssp --------------------------------------------------------SCCSCEEEECCTTTHHHHHHHHHH
T ss_pred --------------------------------------------------------CCCCCEEEEECCHHHHHHHHHHHH
T ss_conf --------------------------------------------------------779988999880389999999999
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCC-------CCHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCH
Q ss_conf 289999729997188766555432-------1002110278899981688863104687776650334321024787201
Q 001510 520 HTRPGSLKTCIYEGARNSSLSDTS-------IMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPT 592 (1064)
Q Consensus 520 ~~~~~~l~V~vy~G~~~~~~~~~~-------~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s 592 (1064)
|+| .+++.+|+|....+..... ........+++|+||||+++.++. .
T Consensus 308 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~------------------------~ 361 (800)
T 3mwy_W 308 WAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR------------------------A 361 (800)
T ss_dssp HST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH------------------------H
T ss_pred HCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHH------------------------H
T ss_conf 779--96499982777778898887762263001344566788990699998649------------------------9
Q ss_pred HHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 00012222188554222489178999999974037099995468889934667422101799999600124321289878
Q 001510 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYEN 672 (1064)
Q Consensus 593 ~L~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPiqN~l~DL~sLL~FL~p~~l~~~~~F~~~~~~pi~~ 672 (1064)
.|..+.|++||+||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|+.|+....|..... ..
T Consensus 362 ~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~---~~ 438 (800)
T 3mwy_W 362 ELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ---DE 438 (800)
T ss_dssp HHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC---TT
T ss_pred HHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC---CH
T ss_conf 983377325641344441471019999999752243897227857799999999999858663674344232223---14
Q ss_pred CCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87116999999985342002222113578999973999995399999999999999988799999999998775206999
Q 001510 673 GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPG 752 (1064)
Q Consensus 673 g~~~~~~~L~~lL~~imlRRtK~dV~~el~LPpk~e~vv~i~LS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 752 (1064)
.....+..|+.+++++|+||+|.+|... ||++.+.+++|+|++.|+.+|+.+..........
T Consensus 439 ~~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~---------------- 500 (800)
T 3mwy_W 439 EQEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNILTKNYSALTA---------------- 500 (800)
T ss_dssp HHHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHHHHCCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH----------------
T ss_conf 6899999999997577753208766431--6882799997079999999999999999999861----------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCC-------------HHHHHHHHHHHHH
Q ss_conf 888887657201146599999999999998079978886633346----99999-------------9999999999989
Q 001510 753 HASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ----QSPLS-------------MDEILMVLIGKTK 815 (1064)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~----~~~~t-------------~eelL~~Li~k~~ 815 (1064)
+ .......+++.+++||++|+||.++........ ....+ .-.+|..++.+..
T Consensus 501 -----~------~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~ 569 (800)
T 3mwy_W 501 -----G------AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK 569 (800)
T ss_dssp -----------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred -----C------CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf -----0------35454469999999998735865423557899886156655577888876642769999999999975
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHCCCCCCC---CE----------------
Q ss_conf 9634501417877758999999999664657799---99--999999997200689876---70----------------
Q 001510 816 IEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVVEEHSEDFRLDPLL---NI---------------- 871 (1064)
Q Consensus 816 ~e~eealrkvlifsq~la~L~iIe~~l~~a~~~y---~~--~l~~~~e~~~~f~~D~l~---~l---------------- 871 (1064)
+..+++++|+|+..++++|+..+......| .+ ....+++.++.|+..... .|
T Consensus 570 ----~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~ 645 (800)
T 3mwy_W 570 ----KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTAD 645 (800)
T ss_dssp ----TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCC
T ss_pred ----HCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf ----2798189996359999999999986799789996999999999999996089998259997454456787760163
Q ss_pred -EEEECCCCCCCCHHHHHHH-HHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf -4785267558120432434-10037777638998211795000004576531013356
Q 001510 872 -HLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREE 928 (1064)
Q Consensus 872 -h~~~NL~~wnp~~e~QA~d-~hRIGq~~~v~v~rl~~~~t~Ee~~~~~~k~~~~~~~~ 928 (1064)
.++++. +|||+.+.||++ +|||||+++|.||||++++|+||.+.+.+++|......
T Consensus 646 ~VI~~D~-~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~ 703 (800)
T 3mwy_W 646 TVVIFDS-DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYA 703 (800)
T ss_dssp EEEESSC-CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC-
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6899468-788116899999988558986379999861998999999999998889999
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=529.21 Aligned_cols=436 Identities=18% Similarity=0.246 Sum_probs=323.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 88468882899999999997200999998311001236788777543476663010267886557988888875453666
Q 001510 284 PDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILA 363 (1064)
Q Consensus 284 p~L~~~LrpYQ~~aV~WMl~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~~rGGILA 363 (1064)
|.+...|||||++||.||+....+... ...+|||||
T Consensus 50 p~l~~~LrpyQ~~gv~~l~~~~~~~~~--------------------------------------------~~~~g~ILa 85 (644)
T 1z3i_X 50 PVLSKVLRPHQREGVKFLWDCVTGRRI--------------------------------------------ENSYGCIMA 85 (644)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTSSS--------------------------------------------TTCCEEEEC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCC--------------------------------------------CCCCCEEEE
T ss_conf 564003519999999999984233544--------------------------------------------588875961
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 29886368999999998139999984111122123202356677621111443203554311124652101323534456
Q 001510 364 DEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQHA 443 (1064)
Q Consensus 364 DEMGLGKTie~LALIl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~cg~~~~~~~~~g~~v~c~~c~~w~ha 443 (1064)
||||||||+++|++|.......+.
T Consensus 86 d~mGlGKT~~~i~~i~~l~~~~~~-------------------------------------------------------- 109 (644)
T 1z3i_X 86 DEMGLGKTLQCITLIWTLLKQSPD-------------------------------------------------------- 109 (644)
T ss_dssp CCTTSCHHHHHHHHHHHHHHCCTT--------------------------------------------------------
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCC--------------------------------------------------------
T ss_conf 078742999999999999974866--------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf 65576889876540356631013565432102578543320001110278989999389990981178999999842899
Q 001510 444 DCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRP 523 (1064)
Q Consensus 444 ~cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~~~ 523 (1064)
.....+++|||||.+++.||.+||.+|++.
T Consensus 110 --------------------------------------------------~~p~~~~~LiV~P~sll~qW~~E~~~~~~~ 139 (644)
T 1z3i_X 110 --------------------------------------------------CKPEIDKVIVVSPSSLVRNWYNEVGKWLGG 139 (644)
T ss_dssp --------------------------------------------------SSCSCSCEEEEECHHHHHHHHHHHHHHHGG
T ss_pred --------------------------------------------------CCCCCCCEEEEECHHHHHHHHHHHHHHCCC
T ss_conf --------------------------------------------------567778579996589988799999997588
Q ss_pred CCCEEEEECCCCCCCCCCC--CCC-HHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHCCCCCC
Q ss_conf 9972999718876655543--210-0211027889998168886310468777665033432102478720100012222
Q 001510 524 GSLKTCIYEGARNSSLSDT--SIM-DISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWW 600 (1064)
Q Consensus 524 ~~l~V~vy~G~~~~~~~~~--~~~-~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~ 600 (1064)
.+.++.++|......... ... .......++|+||||++++.+.. .|....|+
T Consensus 140 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~------------------------~l~~~~~~ 194 (644)
T 1z3i_X 140 -RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE------------------------VLHKGKVG 194 (644)
T ss_dssp -GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT------------------------TTTTSCCC
T ss_pred -CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH------------------------HHHCCCCC
T ss_conf -72599980898899999999998733777787579963899876578------------------------75048865
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCC------
Q ss_conf 18855422248917899999997403709999546888993466742210179999960012432128987887------
Q 001510 601 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD------ 674 (1064)
Q Consensus 601 rVILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPiqN~l~DL~sLL~FL~p~~l~~~~~F~~~~~~pi~~g~------ 674 (1064)
+||+||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|++|++...|.+.|..|+..+.
T Consensus 195 ~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~ 274 (644)
T 1z3i_X 195 LVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD 274 (644)
T ss_dssp EEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS
T ss_pred EEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCH
T ss_conf 79987862247804599999985556737998467345889999999986188768999999986326154167767788
Q ss_pred ------HHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ------11699999998534200222211357899997399999539999999999999998879999999999877520
Q 001510 675 ------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKR 748 (1064)
Q Consensus 675 ------~~~~~~L~~lL~~imlRRtK~dV~~el~LPpk~e~vv~i~LS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1064)
...+..|+.++.++|+||+|+++... ||++.+.+++|+||+.|+.+|+.+.+..... .
T Consensus 275 ~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~--LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~--------------~ 338 (644)
T 1z3i_X 275 KDRAAGEQKLQELISIVNRCLIRRTSDILSKY--LPVKIEQVVCCNLTPLQKELYKLFLKQAKPV--------------E 338 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT--SCCEEEEEEEECCCHHHHHHHHHHHHHHCGG--------------G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH--------------H
T ss_conf 89999999999999998899987108767642--7983699998379989999999999989999--------------9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-------C----CCC---------CCCCHHHHHH
Q ss_conf 6999888887657201146599999999999998079978886633-------3----469---------9999999999
Q 001510 749 NVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR-------S----LQQ---------SPLSMDEILM 808 (1064)
Q Consensus 749 ~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~-------~----~~~---------~~~t~eelL~ 808 (1064)
.. ..+ .....++..+++|||+|+||.++..... . ... .......++.
T Consensus 339 ~~-----~~g--------~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~ 405 (644)
T 1z3i_X 339 SL-----QTG--------KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLD 405 (644)
T ss_dssp SS-----CTT--------CCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHH
T ss_pred HH-----HCC--------CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 87-----627--------62145999999999995799988888741540035577645421110005701174899999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHCCCCCCC---CE---------
Q ss_conf 9999989963450141787775899999999966465779---9999--99999997200689876---70---------
Q 001510 809 VLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEA--MAVVEEHSEDFRLDPLL---NI--------- 871 (1064)
Q Consensus 809 ~Li~k~~~e~eealrkvlifsq~la~L~iIe~~l~~a~~~---y~~~--l~~~~e~~~~f~~D~l~---~l--------- 871 (1064)
.++...... ..+++++|+|+..++++|+..+...... +.+. ...+++.++.|+.+... .+
T Consensus 406 ~ll~~~~~~---~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~G 482 (644)
T 1z3i_X 406 YILAMTRTT---TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCG 482 (644)
T ss_dssp HHHHHHHHH---CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTT
T ss_pred HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 999998646---99879999805999999999999779978998399999999999999639999967999844556678
Q ss_pred --------EEEECCCCCCCCHHHHHHH-HHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf --------4785267558120432434-1003777763899821179500000457653101335
Q 001510 872 --------HLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1064)
Q Consensus 872 --------h~~~NL~~wnp~~e~QA~d-~hRIGq~~~v~v~rl~~~~t~Ee~~~~~~k~~~~~~~ 927 (1064)
.+++++ +|||+.+.||++ +|||||+++|.|||+++++|+||.+.+.+.+|+-...
T Consensus 483 lnl~~a~~Vi~~d~-~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~ 546 (644)
T 1z3i_X 483 LNLIGANRLVMFDP-DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSS 546 (644)
T ss_dssp CCCTTEEEEEECSC-CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 46523898999799-99813799998840322898726999988798899999999999999999
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=485.81 Aligned_cols=416 Identities=25% Similarity=0.341 Sum_probs=325.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 98884688828999999999972009999983110012367887775434766630102678865579888888754536
Q 001510 282 DLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGI 361 (1064)
Q Consensus 282 ~~p~L~~~LrpYQ~~aV~WMl~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~~rGGI 361 (1064)
.++.+..+|+|||++|+.||+.++... +|||
T Consensus 30 ~p~~~~~~L~~~Q~~~v~~l~~~~~~~-------------------------------------------------~~~i 60 (500)
T 1z63_A 30 EPYNIKANLRPYQIKGFSWMRFMNKLG-------------------------------------------------FGIC 60 (500)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHHHHTT-------------------------------------------------CCEE
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHCC-------------------------------------------------CCEE
T ss_conf 983320033699999999999974179-------------------------------------------------9889
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66298863689999999981399999841111221232023566776211114432035543111246521013235344
Q 001510 362 LADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQ 441 (1064)
Q Consensus 362 LADEMGLGKTie~LALIl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~cg~~~~~~~~~g~~v~c~~c~~w~ 441 (1064)
|||+||+|||+++++++......
T Consensus 61 lad~~GlGKT~~ai~~i~~~~~~--------------------------------------------------------- 83 (500)
T 1z63_A 61 LADDMGLGKTLQTIAVFSDAKKE--------------------------------------------------------- 83 (500)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHT---------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHHHHC---------------------------------------------------------
T ss_conf 98089973899999999988755---------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 56655768898765403566310135654321025785433200011102789899993899909811789999998428
Q 001510 442 HADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHT 521 (1064)
Q Consensus 442 ha~cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~ 521 (1064)
...+++|||||.+++.||.+||.+|+
T Consensus 84 ------------------------------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 84 ------------------------------------------------------NELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp ------------------------------------------------------TCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ------------------------------------------------------CCCCCEEEECCHHHHHHHHHHHHHHC
T ss_conf ------------------------------------------------------89997899903899999999999977
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHCCCCCCE
Q ss_conf 99997299971887665554321002110278899981688863104687776650334321024787201000122221
Q 001510 522 RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWR 601 (1064)
Q Consensus 522 ~~~~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~r~~~r~~kry~~~~s~L~~i~w~r 601 (1064)
+ .+++.+++|.... .....++|+|+||+++.++. .+....|++
T Consensus 110 ~--~~~v~~~~g~~~~----------~~~~~~~ivi~t~~~l~~~~-------------------------~l~~~~~~~ 152 (500)
T 1z63_A 110 P--HLRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDT-------------------------RLKEVEWKY 152 (500)
T ss_dssp T--TSCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCH-------------------------HHHTCCEEE
T ss_pred C--CCEEEEEECCCHH----------CCCCCCCEEEEEHHHHHCCC-------------------------HHCCCCCCE
T ss_conf 9--9559997267021----------00357768996379972630-------------------------211787287
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 88554222489178999999974037099995468889934667422101799999600124321289878871169999
Q 001510 602 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFT 681 (1064)
Q Consensus 602 VILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPiqN~l~DL~sLL~FL~p~~l~~~~~F~~~~~~pi~~g~~~~~~~L 681 (1064)
||+||||+++|..++.++++..+.+.++|+|||||++|++.|||++++||.|++|++...|...|..|+..++......|
T Consensus 153 vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l 232 (500)
T 1z63_A 153 IVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEEL 232 (500)
T ss_dssp EEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99808410178768999999960047189974677779999999999985877579989999985251114668899999
Q ss_pred HHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99985342002222113578999973999995399999999999999988799999999998775206999888887657
Q 001510 682 HKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYN 761 (1064)
Q Consensus 682 ~~lL~~imlRRtK~dV~~el~LPpk~e~vv~i~LS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 761 (1064)
+.+++++++||+|.+......||++.+.+++++|++.|+.+|+.+.+...... .. .
T Consensus 233 ~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~-----------~~--------~----- 288 (500)
T 1z63_A 233 KAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI-----------DS--------V----- 288 (500)
T ss_dssp HHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT-----------TT--------C-----
T ss_pred HHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-----------HH--------H-----
T ss_conf 99976674550255424112299975899981899999999999999999999-----------86--------4-----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 20114659999999999999807997888663334699999999999999998996345014178777589999999996
Q 001510 762 PIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 841 (1064)
Q Consensus 762 ~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Li~k~~~e~eealrkvlifsq~la~L~iIe~~ 841 (1064)
........++..+++|||+|+||.+...+.... ......+.+..++.+...++ +++++|+++..+++.|...
T Consensus 289 --~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~--~~s~K~~~l~~~l~~~~~~~----~k~lvF~~~~~~~~~l~~~ 360 (500)
T 1z63_A 289 --TGIKRKGMILSTLLKLKQIVDHPALLKGGEQSV--RRSGKMIRTMEIIEEALDEG----DKIAIFTQFVDMGKIIRNI 360 (500)
T ss_dssp --CTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCS--TTCHHHHHHHHHHHHHHTTT----CCEEEECSCHHHHHHHHHH
T ss_pred --HCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCHH--HCCHHHHHHHHHHHHHHCCC----CCEEEEEEHHHHHHHHHHH
T ss_conf --232106799999999998817998843852011--11552999999999987268----8689997218899999999
Q ss_pred HHHH----HHHHHHH--HHHHHHHHHHCCCCCCC-------------------CEEEEECCCCCCCCHHHHHHH-HHCCC
Q ss_conf 6465----7799999--99999997200689876-------------------704785267558120432434-10037
Q 001510 842 LSQA----VSLYKEA--MAVVEEHSEDFRLDPLL-------------------NIHLHHNLTEILPMVANCATE-LSQNE 895 (1064)
Q Consensus 842 l~~a----~~~y~~~--l~~~~e~~~~f~~D~l~-------------------~lh~~~NL~~wnp~~e~QA~d-~hRIG 895 (1064)
+... +..+.+. ...+++.++.|+.++-. ...+++++ +|||+...||.+ +||+|
T Consensus 361 l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~-~~~~~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 361 IEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR-WWNPAVEDQATDRVYRIG 439 (500)
T ss_dssp HHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC-CSCC---CHHHHTTTTTT
T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECC-CCCCCHHHHHHHHHHHCC
T ss_conf 9885388769997999999999999996089998779995333557774455888999589-989545899999888738
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 77763899821179500000457653101335
Q 001510 896 QHFPGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1064)
Q Consensus 896 q~~~v~v~rl~~~~t~Ee~~~~~~k~~~~~~~ 927 (1064)
|+++|.||++++++|+||.+.+.+++|.-...
T Consensus 440 q~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~ 471 (500)
T 1z63_A 440 QTRNVIVHKLISVGTLEEKIDQLLAFKRSLFK 471 (500)
T ss_dssp TTSCEEEEEEEETTSHHHHTHHHHTTCSSSSS
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 98706999977489899999999999999999
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=329.06 Aligned_cols=349 Identities=14% Similarity=0.129 Sum_probs=235.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 99389990981178999999842899997299971887665554321002110278899981688863104687776650
Q 001510 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
.+++|||||.+++.||..||.+++ .+++.+|+|...... .......+..++|||+||+++.++...
T Consensus 200 ~~rvLIVvP~sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~---~~~~~~~~~~~dIvI~T~~~L~~~~~~-------- 265 (968)
T 3dmq_A 200 AERVLIIVPETLQHQWLVEMLRRF---NLRFALFDDERYAEA---QHDAYNPFDTEQLVICSLDFARRSKQR-------- 265 (968)
T ss_dssp CCCEEEECCTTTHHHHHHHHHHHS---CCCCEECCHHHHHHH---HHTTCSSSTTCSEEEECHHHHHTSTTT--------
T ss_pred CCEEEEEECHHHHHHHHHHHHHHH---CCCEEEECCCHHHHH---HHHCCCCCCCCCEEEECHHHHHHCHHH--------
T ss_conf 982999957888999999999986---998799806205554---320036445689899768998648788--------
Q ss_pred HHHHHHCCCCCCCCHHHCCCCCCEEEECCCCCCCCHHHH---HHHHHHHH--CCCEEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 334321024787201000122221885542224891789---99999974--0370999954688899346674221017
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA---ATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVILDEAH~iKN~~Sk---~~kal~~L--~a~~Rw~LTGTPiqN~l~DL~sLL~FL~ 652 (1064)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|+++.|+.
T Consensus 266 -------------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~ 332 (968)
T 3dmq_A 266 -------------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLD 332 (968)
T ss_dssp -------------THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHC
T ss_pred -------------HHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf -------------8876415877897444676258887542999999998625785899976876698799999998259
Q ss_pred CCCCCCCCHHHHHHCCC---------C------C----------------------------CCCHHHHHHHHHHH----
Q ss_conf 99999600124321289---------8------7----------------------------88711699999998----
Q 001510 653 SSPFSISRWWIEVIRDP---------Y------E----------------------------NGDVGAMEFTHKFF---- 685 (1064)
Q Consensus 653 p~~l~~~~~F~~~~~~p---------i------~----------------------------~g~~~~~~~L~~lL---- 685 (1064)
|+.|++...|...+... + . .........+..++
T Consensus 333 p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g 412 (968)
T 3dmq_A 333 PNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHG 412 (968)
T ss_dssp TTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 30118989999999857889999998742678998899999988420336788750362223337999999999998617
Q ss_pred -HHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf -5342002222113578999973999995399999999999999988799999999998775206999888887657201
Q 001510 686 -KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 764 (1064)
Q Consensus 686 -~~imlRRtK~dV~~el~LPpk~e~vv~i~LS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 764 (1064)
..+++|+++..+. .+|++....+.+++++.++..|+..... .+ .....
T Consensus 413 ~~~~l~r~~r~~i~---~~p~r~~~~~~l~~~~~~~~~~~~~~~~-----------------~~--------~~~~~--- 461 (968)
T 3dmq_A 413 TSRVLFRNTRNGVK---GFPKRELHTIKLPLPTQYQTAIKVSGIM-----------------GA--------RKSAE--- 461 (968)
T ss_dssp TTTTEECCCTTTCC---CCCCCCCCEEEECCCHHHHHHHHHHHHT-----------------TC--------CSSGG---
T ss_pred CCHHHHHHHHHHHC---CCCHHHEEEEECCCCHHHHHHHHHHHHH-----------------HH--------HHHHH---
T ss_conf 33265632265545---5671115752368999999999987543-----------------02--------12667---
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 146599999999999998079978886633346---99999999999999998996345014178777589999999996
Q 001510 765 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ---QSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 841 (1064)
Q Consensus 765 ~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~---~~~~t~eelL~~Li~k~~~e~eealrkvlifsq~la~L~iIe~~ 841 (1064)
.....|.+|......+.... .......+.+..++.. ....++++|++....++.+...
T Consensus 462 -------------~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~------~~~~k~iVF~~~~~~~~~l~~~ 522 (968)
T 3dmq_A 462 -------------DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS------HRSQKVLVICAKAATALQLEQV 522 (968)
T ss_dssp -------------GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH------TSSSCCCEECSSTHHHHHHHHH
T ss_pred -------------HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------CCCCCEEEEECCHHHHHHHHHH
T ss_conf -------------777641085989987643331356856799999999983------7999789996959999999999
Q ss_pred HHHH----HHHHHHHH--HHHHHHHHHCCCCC--CC-----------------CEEEEECCCCCCCCHHHHHHH-HHCCC
Q ss_conf 6465----77999999--99999972006898--76-----------------704785267558120432434-10037
Q 001510 842 LSQA----VSLYKEAM--AVVEEHSEDFRLDP--LL-----------------NIHLHHNLTEILPMVANCATE-LSQNE 895 (1064)
Q Consensus 842 l~~a----~~~y~~~l--~~~~e~~~~f~~D~--l~-----------------~lh~~~NL~~wnp~~e~QA~d-~hRIG 895 (1064)
+... +..+.+.+ ..+++..+.|+.+. .. ...+++++ +|+|....|+.+ ++|+|
T Consensus 523 L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~-p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 523 LREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL-PFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp HHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC-CSSHHHHHHHHHTTSCSS
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCEEEEECC-CCCHHHHHHHHHCCCCCC
T ss_conf 9987498389984999999999999997479976308985334316888556767999569-998789998701143079
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHC
Q ss_conf 77763899821179500000457653101
Q 001510 896 QHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1064)
Q Consensus 896 q~~~v~v~rl~~~~t~Ee~~~~~~k~~~~ 924 (1064)
|++.|.+|++++++|+|+.+....++|.-
T Consensus 602 q~~~v~v~~~~~~~t~ee~i~~~~~~k~~ 630 (968)
T 3dmq_A 602 QAHDIQIHVPYLEKTAQSVLVRWYHEGLD 630 (968)
T ss_dssp SCSCCEEEEEEETTSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 98508999805777199999999986787
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=241.61 Aligned_cols=368 Identities=11% Similarity=0.033 Sum_probs=207.3
Q ss_pred CCEEEEECC-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 938999098-1178999999842899997299971887665554321002110278899981688863104687776650
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1064)
+++|||||. +++.||.+|+.+++..+..++.+++|...... .......++|+|+||+++...+..
T Consensus 53 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~------~~~~~~~~~ivv~T~~~l~~~~~~-------- 118 (494)
T 1wp9_A 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEE------RSKAWARAKVIVATPQTIENDLLA-------- 118 (494)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHH------HHHHHHHCSEEEECHHHHHHHHHT--------
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCHHHEEEEECCCCHHH------HHHHCCCCCEEEECHHHHHHHHHC--------
T ss_conf 859999788899999999999874756111687607753355------665335798999639999999860--------
Q ss_pred HHHHHHCCCCCCCCHHHCCCCCCEEEECCCCCCCCHHHHH--HHHHH-HHCCCEEEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf 3343210247872010001222218855422248917899--99999-74037099995468889934667422101799
Q 001510 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA--TEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1064)
Q Consensus 578 r~~~r~~kry~~~~s~L~~i~w~rVILDEAH~iKN~~Sk~--~kal~-~L~a~~Rw~LTGTPiqN~l~DL~sLL~FL~p~ 654 (1064)
..+....|..||+||||.+++..+.. ...+. ..+..++|+|||||. |+..+++.++.++...
T Consensus 119 --------------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~ 183 (494)
T 1wp9_A 119 --------------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIE 183 (494)
T ss_dssp --------------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCC
T ss_pred --------------CCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHH
T ss_conf --------------8715654108999787566888819999999973288776999956998-8857899999850700
Q ss_pred CCCCCCHH---HHHHCCCCC-----CCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 99960012---432128987-----8871169999999853420022221135789999739999953999999999999
Q 001510 655 PFSISRWW---IEVIRDPYE-----NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1064)
Q Consensus 655 ~l~~~~~F---~~~~~~pi~-----~g~~~~~~~L~~lL~~imlRRtK~dV~~el~LPpk~e~vv~i~LS~~Er~~Y~~~ 726 (1064)
.......+ ...+..+.. ...+.....+...+.+++.++.+......+ +++.. ..++..+.......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~ 257 (494)
T 1wp9_A 184 HIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL-LESSS-----PDIPKKEVLRAGQI 257 (494)
T ss_dssp EEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCCC-----TTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCC-----CCCCHHHHHHHHHH
T ss_conf 0502678758788752787426895688588999999898999999999997355-65457-----77335578999999
Q ss_pred HHHHHHH--------H--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC---
Q ss_conf 9998879--------9--99999999877520699988888765720114659999999999999807997888663---
Q 001510 727 HETCVGY--------A--REVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGL--- 793 (1064)
Q Consensus 727 ~~~~~~~--------~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~--- 793 (1064)
....... . ......+..... .........+...+..|+..|.|+.......
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 258 INEEMAKGNHDLRGLLLYHAMALKLHHAIE----------------LLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp HHHHHTTTCCSTTTHHHHHHHHHHHHHHHH----------------HHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH----------------HHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 998753356311347999988888999999----------------9985257999999999987522321145566665
Q ss_pred ----CC---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------
Q ss_conf ----33---------46999999999999999989963450141787775899999999966465---779999------
Q 001510 794 ----RS---------LQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA---VSLYKE------ 851 (1064)
Q Consensus 794 ----~~---------~~~~~~t~eelL~~Li~k~~~e~eealrkvlifsq~la~L~iIe~~l~~a---~~~y~~------ 851 (1064)
.. ........-+.+..++.+.... ....++++|+++...++.+.+.+... +..+.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 0788989999998874589986999999999998436--89975999976689999999999975998079965665444
Q ss_pred --H--HHHHHHHHHHCCCCCCC-----------------CEEEEECCCCCCCCHHHHHHH-HHCCCCCCCEEEEECCCCC
Q ss_conf --9--99999997200689876-----------------704785267558120432434-1003777763899821179
Q 001510 852 --A--MAVVEEHSEDFRLDPLL-----------------NIHLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIH 909 (1064)
Q Consensus 852 --~--l~~~~e~~~~f~~D~l~-----------------~lh~~~NL~~wnp~~e~QA~d-~hRIGq~~~v~v~rl~~~~ 909 (1064)
. ...+++..+.|+.+... ...+.+++ .|+|+...|+.+ ++|.|| +.+|++++.+
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~-~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~ 475 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP-VPSAIRSIQRRGRTGRHMP---GRVIILMAKG 475 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC-CHHHHHHHHHHTTSCSCCC---SEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCEEEEECC-CCCHHHHHHHHHHCCCCCC---CEEEEEEECC
T ss_conf 44589999999999986699469998884125887143798999289-8878999998752257788---4699999569
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 50000045765310
Q 001510 910 SIETCDENARKCQR 923 (1064)
Q Consensus 910 t~Ee~~~~~~k~~~ 923 (1064)
|+||.+...+.+|.
T Consensus 476 t~ee~~~~~~~~k~ 489 (494)
T 1wp9_A 476 TRDEAYYWSSRQKE 489 (494)
T ss_dssp SHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHH
T ss_conf 87899999888789
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=224.14 Aligned_cols=309 Identities=13% Similarity=0.087 Sum_probs=192.2
Q ss_pred CCEEEEECC-CHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 938999098-11789999998428999972-9997188766555432100211027889998168886310468777665
Q 001510 499 GATLIVCPA-PILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~l~-V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
+++|||||. +|+.||.+++.+| .++ +.+++|.... ..+|+|+||+.+.....
T Consensus 134 ~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~--------------~~~Ivv~T~~~l~~~~~-------- 187 (472)
T 2fwr_A 134 TPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE--------------LKPLTVSTYDSAYVNAE-------- 187 (472)
T ss_dssp SCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC--------------CCSEEEEEHHHHHHTHH--------
T ss_pred CCEEEEECCHHHHHHHHHHHHHC----CCCCEEEECCCCCC--------------CCCEEEEECHHHHHHHH--------
T ss_conf 99999987999999999999967----99636998787677--------------67789997689997799--------
Q ss_pred CHHHHHHCCCCCCCCHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 03343210247872010001222218855422248917899999997403709999546888993466742210179999
Q 001510 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPiqN~l~DL~sLL~FL~p~~l 656 (1064)
...-.|..||+||+|.+.+.... ..+..+.+.++++|||||..+.-.+
T Consensus 188 -----------------~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------- 235 (472)
T 2fwr_A 188 -----------------KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------- 235 (472)
T ss_dssp -----------------HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG-------------
T ss_pred -----------------HHCCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH-------------
T ss_conf -----------------73687778999897578976899--9997357781899932766889778-------------
Q ss_pred CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96001243212898788711699999998534200222211357899997399999539999999999999998879999
Q 001510 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1064)
Q Consensus 657 ~~~~~F~~~~~~pi~~g~~~~~~~L~~lL~~imlRRtK~dV~~el~LPpk~e~vv~i~LS~~Er~~Y~~~~~~~~~~~~~ 736 (1064)
..+..++.+.+.+....++... -+++.....+.+++++.++..|..+......
T Consensus 236 ----------------------~~l~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 288 (472)
T 2fwr_A 236 ----------------------EILKEVVGGKVFELFPDSLAGK-HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ---- 288 (472)
T ss_dssp ----------------------GSHHHHTCCEEEECCHHHHTSC-CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----
T ss_pred ----------------------HHHHHHHCCEEEECCHHHHHCC-CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----
T ss_conf ----------------------9999972985765478987067-6788189999858998999999999999999----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999987752069998888876572011----46599999999999998079978886633346999999999999999
Q 001510 737 VIQRLKDNILKRNVPGHASSDALYNPIIT----HAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIG 812 (1064)
Q Consensus 737 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Li~ 812 (1064)
............... ...+. .......+....+.++++++.. ...+.+..++.
T Consensus 289 --------~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~k~~~l~~~l~ 345 (472)
T 2fwr_A 289 --------FLRARGITLRRAEDF-NKIVMASGYDERAYEALRAWEEARRIAFNSK--------------NKIRKLREILE 345 (472)
T ss_dssp --------CSSSCCCTTTCCSSS-TTTTTTTCCSSSSSTTTHHHHHHHHHHHSCS--------------HHHHHHHHHHH
T ss_pred --------HHHHCCCCCCCHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH--------------HHHHHHHHHHH
T ss_conf --------998647542244668-9999872369889999999999999763373--------------89999999998
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------------CCEEEEE
Q ss_conf 98996345014178777589999999996646577999999999999720068987-----------------6704785
Q 001510 813 KTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-----------------LNIHLHH 875 (1064)
Q Consensus 813 k~~~e~eealrkvlifsq~la~L~iIe~~l~~a~~~y~~~l~~~~e~~~~f~~D~l-----------------~~lh~~~ 875 (1064)
+ ...+++++|++....++.+.+.+.............+++..+.|+.... ....+.+
T Consensus 346 ~------~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~ 419 (472)
T 2fwr_A 346 R------HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIM 419 (472)
T ss_dssp H------TSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEE
T ss_pred H------CCCCCEEEEECCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCEEEEE
T ss_conf 5------7898389997979999999997486556289999999999999867998889985705148462028689998
Q ss_pred CCCCCCCCHHHHHHH-HHCCCCC-CCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 267558120432434-1003777-7638998211795000004576531
Q 001510 876 NLTEILPMVANCATE-LSQNEQH-FPGCSEKAFKIHSIETCDENARKCQ 922 (1064)
Q Consensus 876 NL~~wnp~~e~QA~d-~hRIGq~-~~v~v~rl~~~~t~Ee~~~~~~k~~ 922 (1064)
+.. |+++...|+.+ ++|+||. +.|.+|.+++++|+||.+....++|
T Consensus 420 ~~~-~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~ 467 (472)
T 2fwr_A 420 SGS-GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNA 467 (472)
T ss_dssp CCS-SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----------
T ss_pred CCC-CCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 999-988899998763157779985399999981998537999999876
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=198.20 Aligned_cols=206 Identities=17% Similarity=0.166 Sum_probs=148.1
Q ss_pred HHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 34200222211357899997399999539999999999999998879999999999877520699988888765720114
Q 001510 687 EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITH 766 (1064)
Q Consensus 687 ~imlRRtK~dV~~el~LPpk~e~vv~i~LS~~Er~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 766 (1064)
.--+||+|++|..+ |||+.+.+++|+||+.|+++|+.+.+.....+. .. . ..
T Consensus 11 ~~~~rr~k~~v~~~--LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~-----------~~--------~-------~~ 62 (271)
T 1z5z_A 11 SSGLVPRGSHMASD--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNID-----------SV--------T-------GI 62 (271)
T ss_dssp -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT-----------TC--------C-------HH
T ss_pred CCCCCCCHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH-----------HC--------C-------CC
T ss_conf 55641648778751--999779999818999999999999999999997-----------40--------3-------52
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 6599999999999998079978886633346999999999999999989963450141787775899999999966465-
Q 001510 767 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA- 845 (1064)
Q Consensus 767 ~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Li~k~~~e~eealrkvlifsq~la~L~iIe~~l~~a- 845 (1064)
.....+++.+++|||+|+||.++...... ......-+.|..++.+....+ +++++|+|+..++++|+..+...
T Consensus 63 ~~~~~~l~~l~~Lrq~~~hP~l~~~~~~~--~~~s~K~~~L~~ll~~~~~~~----~kvlIFs~~~~~~~~l~~~L~~~~ 136 (271)
T 1z5z_A 63 KRKGMILSTLLKLKQIVDHPALLKGGEQS--VRRSGKMIRTMEIIEEALDEG----DKIAIFTQFVDMGKIIRNIIEKEL 136 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHCSCCC--STTCHHHHHHHHHHHHHHHTT----CCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 12889999999999984899884687322--346899999999999998679----969999551999999999998733
Q ss_pred ---HHHHHHH--HHHHHHHHHHCCCCCCCC-------------------EEEEECCCCCCCCHHHHHHH-HHCCCCCCCE
Q ss_conf ---7799999--999999972006898767-------------------04785267558120432434-1003777763
Q 001510 846 ---VSLYKEA--MAVVEEHSEDFRLDPLLN-------------------IHLHHNLTEILPMVANCATE-LSQNEQHFPG 900 (1064)
Q Consensus 846 ---~~~y~~~--l~~~~e~~~~f~~D~l~~-------------------lh~~~NL~~wnp~~e~QA~d-~hRIGq~~~v 900 (1064)
+..+.+. ...+++.++.|+.++-.. ..+++++ +|||+.+.||++ +||+||+++|
T Consensus 137 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~-~wnp~~~~Q~~gR~~R~Gq~~~v 215 (271)
T 1z5z_A 137 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR-WWNPAVEDQATDRVYRIGQTRNV 215 (271)
T ss_dssp CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSC-CSCTTTC--------------CC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECC-CCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 98479997999999999999983289999789972235158867644899999799-99851899999852323899856
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 899821179500000457653101335
Q 001510 901 CSEKAFKIHSIETCDENARKCQRVSRE 927 (1064)
Q Consensus 901 ~v~rl~~~~t~Ee~~~~~~k~~~~~~~ 927 (1064)
.||++++++|+||.+.+.+++|.-...
T Consensus 216 ~v~~li~~~TiEe~i~~~~~~K~~l~~ 242 (271)
T 1z5z_A 216 IVHKLISVGTLEEKIDQLLAFKRSLFK 242 (271)
T ss_dssp EEEEEEETTSHHHHHHHHHHHCHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 999985498899999999999999999
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=196.38 Aligned_cols=368 Identities=11% Similarity=0.029 Sum_probs=184.2
Q ss_pred CCCEEEEECCC-HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 99389990981-17899999984289999729997188766555432100211027889998168886310468777665
Q 001510 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
.+++|||||.. |+.||.+++.++++...+++.+++|....... .......++|+|+||+.+...+...
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~-----~~~~~~~~~IvI~Tp~~L~~~l~~~------ 364 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----C-----CHHHHHHCSEEEECHHHHHHHHHSS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH-----HHHHCCCCCEEEECHHHHHHHHHCC------
T ss_conf 98599996989999999999999712169559999799631257-----8974169999994499999998717------
Q ss_pred CHHHHHHCCCCCCCCHHH-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHC--------CCEEEEEECCCCCCCHHHHH--
Q ss_conf 033432102478720100-0122221885542224891789999999740--------37099995468889934667--
Q 001510 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDDLY-- 645 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~--------a~~Rw~LTGTPiqN~l~DL~-- 645 (1064)
.+ ..-.|..||+||||.+.+..+....+...+. ..++++|||||.+++..++.
T Consensus 365 ----------------~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~ 428 (936)
T 4a2w_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 428 (936)
T ss_dssp ----------------SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf ----------------6453367879999873135998669999999999863137886739986388554540208999
Q ss_pred --------HHHHCCCCCC-CCCCCHHHHHHCCCCCC------CCH----HH----HHHHHHHHHHHHEECCCCCCCC--C
Q ss_conf --------4221017999-99600124321289878------871----16----9999999853420022221135--7
Q 001510 646 --------GLLRFLKSSP-FSISRWWIEVIRDPYEN------GDV----GA----MEFTHKFFKEIMCRSSKVHVSD--E 700 (1064)
Q Consensus 646 --------sLL~FL~p~~-l~~~~~F~~~~~~pi~~------g~~----~~----~~~L~~lL~~imlRRtK~dV~~--e 700 (1064)
..++.-.... ......+...+..|... ... .. +..++.++..++- ...+.. .
T Consensus 429 ~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~---~~~l~~~~~ 505 (936)
T 4a2w_A 429 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAY---VDTLSQNSK 505 (936)
T ss_dssp HHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCC
T ss_conf 99999999854971553465448999875367762377336556757999999999999999998876---655532022
Q ss_pred CCCCCCEE-----------EEEEECCCHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCCCC
Q ss_conf 89999739-----------999953999999999999999887999------------------9999999877520699
Q 001510 701 LQLPPQEE-----------CVSWLTFSPIEEHFYQSQHETCVGYAR------------------EVIQRLKDNILKRNVP 751 (1064)
Q Consensus 701 l~LPpk~e-----------~vv~i~LS~~Er~~Y~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 751 (1064)
..++++.. ....++....+..+|..+... ....+ ..+..+.......
T Consensus 506 ~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~-~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~--- 581 (936)
T 4a2w_A 506 KDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC-TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNG--- 581 (936)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT---
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC---
T ss_conf 3322577999999999988774055321035799999999-999999888875002042888999999999987632---
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 98888876572011465999999999999980799788866333469999999999999999899634501417877758
Q 001510 752 GHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNG 831 (1064)
Q Consensus 752 g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Li~k~~~e~eealrkvlifsq~ 831 (1064)
+. +. ....-...+...+..|.+.+..|...+ ..-+.|..++.+.. .....+++++|+++
T Consensus 582 ------~~-~~-~e~~l~~~~~~~~~~l~~~~~~~~~~~-----------~K~~~L~~lL~~~~--~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 582 ------PY-TE-LEQHLTAKFQEKEPELIALSKDETNEN-----------PKLEELVCILDDAY--RYNPQTRTLLFAKT 640 (936)
T ss_dssp ------TC-CH-HHHHHHHHHHHHHHHHHHHHTSTTCCC-----------HHHHHHHHHHHHTT--TSCTTCCEEEEESS
T ss_pred ------CC-CH-HHHHHHHHHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHH--CCCCCCEEEEEECC
T ss_conf ------58-87-899999989999999997640567789-----------79999999999985--35899749999697
Q ss_pred HHHHHHHHHHHHHH---------------HHHHHHHH--HHHHHHHHHCCC-CCC-----------------CCEEEEEC
Q ss_conf 99999999966465---------------77999999--999999720068-987-----------------67047852
Q 001510 832 LAGIALIEKNLSQA---------------VSLYKEAM--AVVEEHSEDFRL-DPL-----------------LNIHLHHN 876 (1064)
Q Consensus 832 la~L~iIe~~l~~a---------------~~~y~~~l--~~~~e~~~~f~~-D~l-----------------~~lh~~~N 876 (1064)
..+++.|.+.+... ...+.+.+ ..+.+.++.|+. +.. ....++++
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHCCCCCHHCCEEEEEC
T ss_conf 99999999998637353666616996578765678889999999999863159815999807264277605589899938
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHC
Q ss_conf 675581204324341003777763899821179500000457653101
Q 001510 877 LTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1064)
Q Consensus 877 L~~wnp~~e~QA~d~hRIGq~~~v~v~rl~~~~t~Ee~~~~~~k~~~~ 924 (1064)
+. ||+....|+. -| ||.+++.++.+++.+++||.......+++.
T Consensus 721 ~p-~s~~~~iQr~--GR-GR~~~g~vi~Li~~~t~ee~~~~~~~ke~~ 764 (936)
T 4a2w_A 721 YS-GNVTKMIQVR--GR-GRAAGSKCILVTSKTEVVENEKCNRYKEEM 764 (936)
T ss_dssp CC-SCSHHHHCC----------CCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHC--CC-CCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99-9889999964--87-788887799998698899999998899999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=188.38 Aligned_cols=357 Identities=11% Similarity=0.033 Sum_probs=175.6
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 9938999098-117899999984289999729997188766555432100211027889998168886310468777665
Q 001510 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~~~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
.+++|||||. +|+.||.+++.++++...+++..++|....... .......++|+|+||+.+...+...
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~~~Ivv~Tp~~l~~~l~~~------ 364 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C-----HHHHHHTCSEEEECHHHHHHHHHSS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH-----HHHHHCCCCEEEECHHHHHHHHHHC------
T ss_conf 99699996989999999999998614379469999699623246-----9974079999997669999999826------
Q ss_pred CHHHHHHCCCCCCCCHHH-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHC--------CCEEEEEECCCCCCCHHH----
Q ss_conf 033432102478720100-0122221885542224891789999999740--------370999954688899346----
Q 001510 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDD---- 643 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~--------a~~Rw~LTGTPiqN~l~D---- 643 (1064)
.+ ..-.|..||+||||++.+.......+...+. ..++++|||||.+++..+
T Consensus 365 ----------------~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~ 428 (797)
T 4a2q_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 428 (797)
T ss_dssp ----------------SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf ----------------5465133778999886355887649999999999763147887859997277554552248999
Q ss_pred ------HHHHHHCCCCC-CCCCCCHHHHHHCCCCCCC------CH--------HHHHHHHHHHHHHHEECCCCCCCCCCC
Q ss_conf ------67422101799-9996001243212898788------71--------169999999853420022221135789
Q 001510 644 ------LYGLLRFLKSS-PFSISRWWIEVIRDPYENG------DV--------GAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1064)
Q Consensus 644 ------L~sLL~FL~p~-~l~~~~~F~~~~~~pi~~g------~~--------~~~~~L~~lL~~imlRRtK~dV~~el~ 702 (1064)
++..+.+-... .......+..++..|.... .. ..+..++.++..++-.... ..
T Consensus 429 ~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l------~~ 502 (797)
T 4a2q_A 429 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTL------SQ 502 (797)
T ss_dssp HHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
T ss_conf 999999998549848854543178899735888548884577778678999999999999999998756776------53
Q ss_pred CCCCEE----------------EEEEECCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHC
Q ss_conf 999739----------------999953999999999999999887999999------------------9999877520
Q 001510 703 LPPQEE----------------CVSWLTFSPIEEHFYQSQHETCVGYAREVI------------------QRLKDNILKR 748 (1064)
Q Consensus 703 LPpk~e----------------~vv~i~LS~~Er~~Y~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 748 (1064)
+|.... ....+.....+...|..+.. +....+... ..+.......
T Consensus 503 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 581 (797)
T 4a2q_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI-CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNG 581 (797)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 000011405677899999998777403432025679999999-9999999998876541325888999999999987504
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 69998888876572011465999999999999980799788866333469999999999999999899634501417877
Q 001510 749 NVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMA 828 (1064)
Q Consensus 749 ~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Li~k~~~e~eealrkvlif 828 (1064)
. . +. ....-.......+..+...+..|... ...-+.|..++.+... .....++++|
T Consensus 582 ~---------~-~~-~~~~l~~~~~~~~~~l~~~~~~~~~~-----------~~K~~~L~~lL~~~~~--~~~~~kvLIF 637 (797)
T 4a2q_A 582 P---------Y-TE-LEQHLTAKFQEKEPELIALSKDETNE-----------NPKLEELVCILDDAYR--YNPQTRTLLF 637 (797)
T ss_dssp T---------C-CH-HHHHHHHHHHTTHHHHHHHHHCTTCC-----------CHHHHHHHHHHHHHHH--HCSSCCEEEE
T ss_pred C---------C-CH-HHHHHHHHHHHHHHHHHHHHCCCCCC-----------CHHHHHHHHHHHHHHC--CCCCCEEEEE
T ss_conf 7---------6-68-99999999999999998763078889-----------9599999999999850--5899708999
Q ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHH--HHHHHHHHHCCC-CCC-----------------CCEEE
Q ss_conf 75899999999966465---------------77999999--999999720068-987-----------------67047
Q 001510 829 LNGLAGIALIEKNLSQA---------------VSLYKEAM--AVVEEHSEDFRL-DPL-----------------LNIHL 873 (1064)
Q Consensus 829 sq~la~L~iIe~~l~~a---------------~~~y~~~l--~~~~e~~~~f~~-D~l-----------------~~lh~ 873 (1064)
++...+++.|.+.+... ...+.+.+ ..+.+.++.|+. +.. ....+
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCHHCCEEE
T ss_conf 79589999999999747564665521898447754578989999999999851369704999748054479751089899
Q ss_pred EECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH
Q ss_conf 8526755812043243410037777638998211795000004
Q 001510 874 HHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1064)
Q Consensus 874 ~~NL~~wnp~~e~QA~d~hRIGq~~~v~v~rl~~~~t~Ee~~~ 916 (1064)
+|++. |||....|+. -| |+.+++.+|.+++.+++||...
T Consensus 718 ~yd~p-~s~~~~iQr~--GR-GR~~~g~~i~l~~~~~~ee~~~ 756 (797)
T 4a2q_A 718 LYEYS-GNVTKMIQVR--GR-GRAAGSKCILVTSKTEVVENEK 756 (797)
T ss_dssp EESCC-SCHHHHHTC----------CCCEEEEECCHHHHHHHH
T ss_pred EECCC-CCHHHHHHHC--CC-CCCCCCEEEEEEECCCHHHHHH
T ss_conf 94899-9889999853--88-8787865999972876889999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=178.17 Aligned_cols=357 Identities=11% Similarity=0.042 Sum_probs=174.7
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 9938999098-117899999984289999729997188766555432100211027889998168886310468777665
Q 001510 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1064)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~~~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1064)
.+.+|||||. +|..||.+++.++++...+++..++|....... .......++|+|+|++.+...+...
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~------ 123 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 123 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----C-----HHHHHHHCSEEEECHHHHHHHHHSS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH-----HHHHHCCCCEEEECHHHHHHHHHHC------
T ss_conf 98699992889999999999998724069459998289874222-----8986179999998899999999837------
Q ss_pred CHHHHHHCCCCCCCCHHH-CCCCCCEEEECCCCCCCCHHHHHHHHHHHH--------CCCEEEEEECCCCCCCHHHHH--
Q ss_conf 033432102478720100-012222188554222489178999999974--------037099995468889934667--
Q 001510 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRL--------YAKHRWCITGTPIQRKLDDLY-- 645 (1064)
Q Consensus 577 ~r~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~iKN~~Sk~~kal~~L--------~a~~Rw~LTGTPiqN~l~DL~-- 645 (1064)
.+ ..-.|..||+||||.+.+.......+...+ +..++++|||||.+++..++.
T Consensus 124 ----------------~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~ 187 (556)
T 4a2p_A 124 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 187 (556)
T ss_dssp ----------------SCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf ----------------5025030779999887535886459999999998530136888769999478566751669999
Q ss_pred -----HHHHCCCCCCC----CCCCHHHHHHCCCCCC------CCH----H----HHHHHHHHHHHHHEECCCCCCCCCCC
Q ss_conf -----42210179999----9600124321289878------871----1----69999999853420022221135789
Q 001510 646 -----GLLRFLKSSPF----SISRWWIEVIRDPYEN------GDV----G----AMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1064)
Q Consensus 646 -----sLL~FL~p~~l----~~~~~F~~~~~~pi~~------g~~----~----~~~~L~~lL~~imlRRtK~dV~~el~ 702 (1064)
.+...+....+ .....+..++..|... ... . .+..+...+..++- +.....
T Consensus 188 ~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 261 (556)
T 4a2p_A 188 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS------VDTLSQ 261 (556)
T ss_dssp HHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHCCCEEECCHHCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHC
T ss_conf 99999999853984843332026778742799853799827876775999999999999999988863------201210
Q ss_pred CCCCEE----------------EEEEECCCHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHC
Q ss_conf 999739----------------9999539999999999999998879999999------------------999877520
Q 001510 703 LPPQEE----------------CVSWLTFSPIEEHFYQSQHETCVGYAREVIQ------------------RLKDNILKR 748 (1064)
Q Consensus 703 LPpk~e----------------~vv~i~LS~~Er~~Y~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 748 (1064)
++.... ....+.....+...|..+.. +......... .+.......
T Consensus 262 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 340 (556)
T 4a2p_A 262 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI-CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNG 340 (556)
T ss_dssp ---CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 333344335678999999998776405432016789999999-9999999999998861120789999999999998733
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 69998888876572011465999999999999980799788866333469999999999999999899634501417877
Q 001510 749 NVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMA 828 (1064)
Q Consensus 749 ~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~t~eelL~~Li~k~~~e~eealrkvlif 828 (1064)
+.. .....-.......+..+...+..+... ...-+.|..++.+... ....+++++|
T Consensus 341 ---------~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~K~~~L~~~l~~~~~--~~~~~k~lVF 396 (556)
T 4a2p_A 341 ---------PYT--ELEQHLTAKFQEKEPELIALSKDETNE-----------NPKLEELVCILDDAYR--YNPQTRTLLF 396 (556)
T ss_dssp ---------CCC--HHHHHHHHHHHTTHHHHHHHHHCSSSC-----------CHHHHHHHHHHHHHHH--HCTTCCEEEE
T ss_pred ---------CCC--HHHHHHHHHHHHHHHHHHHHCCCCCCC-----------CHHHHHHHHHHHHHHC--CCCCCEEEEE
T ss_conf ---------798--789999998766788764210378999-----------9699999999999834--7998549999
Q ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHH--HHHHHHHHHHCCC-CCCC-----------------CEEE
Q ss_conf 758999999999664657---------------799999--9999999720068-9876-----------------7047
Q 001510 829 LNGLAGIALIEKNLSQAV---------------SLYKEA--MAVVEEHSEDFRL-DPLL-----------------NIHL 873 (1064)
Q Consensus 829 sq~la~L~iIe~~l~~a~---------------~~y~~~--l~~~~e~~~~f~~-D~l~-----------------~lh~ 873 (1064)
+++....+.|.+.+.... ..+.+. ...+.+..+.|+. +... ...+
T Consensus 397 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI 476 (556)
T 4a2p_A 397 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 476 (556)
T ss_dssp ESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEE
T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCHHCCEEE
T ss_conf 76589999999999858775500014787367765565669899999999840469658999767043377752178899
Q ss_pred EECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH
Q ss_conf 8526755812043243410037777638998211795000004
Q 001510 874 HHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1064)
Q Consensus 874 ~~NL~~wnp~~e~QA~d~hRIGq~~~v~v~rl~~~~t~Ee~~~ 916 (1064)
.+++. |++....|+ +-| |+.+++.+|.+++.+++||...
T Consensus 477 ~~d~p-~s~~~~~Qr--~GR-gR~~~g~~~~l~~~~~~~~~~~ 515 (556)
T 4a2p_A 477 LYEYS-GNVTKMIQV--RGR-GRAAGSKCILVTSKTEVVENEK 515 (556)
T ss_dssp EETCC-SCHHHHHHC-----------CCEEEEESCHHHHHHHH
T ss_pred EECCC-CCHHHHHHH--CCC-CCCCCCEEEEEEECCCHHHHHH
T ss_conf 91899-978899886--387-8788841899982763677777
Done!